isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
transcript_1.known	ERCC-00002	+	1045	1	FSM	ERCC-00002A	DQ459430	1045	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00002_+_0_1000
transcript_10.known	ERCC-00034	+	1003	1	FSM	ERCC-00034A	DQ855001	1003	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00034_+_0_1000
transcript_100019.nnic	chr5	+	2617	15	NNC	ENSMUSG00000028999.16	novel	3298	15	NA	NA	-17	-521	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_11	22.3498390625626	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAGAGTTGGATTGAAGT	NA	False	NA	NA	False	NA	NA	NA	23992691	24024774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016803_24020649_24020865_24021736_24021918_24022032_24022152_24024385
transcript_10002.known	chr10	-	7581	10	FSM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_9	46.8506953451172	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGTGTCTGTCTCTTAT	5326	False	NA	-4	True	AATAAA	-23	NA	68114570	67928349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_68021855_68022087_68078833_68079060_68113759_68114015_68114519
transcript_100023.known	chr5	+	3298	15	FSM	ENSMUSG00000028999.16	ENSMUST00000030852.13	3298	15	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_5	10.4591040315534	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTATTTCTTTGTGTG	NA	False	NA	4	True	NA	NA	NA	23992708	24025367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385
transcript_100034.known	chr5	+	3363	14	FSM	ENSMUSG00000028999.16	ENSMUST00000124680.8	3363	14	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_5	10.8529711253887	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAAGTATTTCTTTGTGT	NA	False	NA	3	True	NA	NA	NA	23992716	24025366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385
transcript_100035.known	chr5	+	3048	14	FSM	ENSMUSG00000028999.16	ENSMUST00000115113.3	3048	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	22.8737207421905	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCACAATAGTTTTATGA	NA	False	NA	-68	True	NA	NA	NA	23992712	24025295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385
transcript_100039.known	chr5	+	1375	4	FSM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.0453610171873	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCGTCAGGTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	24055594	24060036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24055620_24057118_24057154_24057715_24057759_24058764
transcript_100042.known	chr5	+	318	3	FSM	ENSMUSG00000097180.6	ENSMUST00000197551.2	318	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTACTTTTATGTT	NA	False	NA	NA	False	CATAAA	-31	NA	24055598	24057977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24055620_24057118_24057154_24057715
transcript_100043.known	chr5	+	2966	11	FSM	ENSMUSG00000028986.13	ENSMUST00000030841.10	2966	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	4.51220566907139	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGATTTGCTTTGTTTA	NA	False	NA	6	True	ATTAAA	-13	NA	24305602	24365783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24361887_24362090_24363536_24363635_24364444
transcript_100045.known	chr5	+	2914	7	FSM	ENSMUSG00000048439.16	ENSMUST00000049887.13	2914	7	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_5	7.43116560320265	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTGTCTGTTATCTACC	5146	False	NA	NA	False	NA	NA	NA	24369960	24389011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24380451_24380529_24382997_24383085_24386078_24386164_24386905
transcript_100047.known	chr5	+	1624	6	FSM	ENSMUSG00000048439.16	ENSMUST00000115101.4	1624	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	25.7013618316229	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCAAGGGACTCTTTTGT	5183	False	NA	NA	False	AATAAA	-20	NA	24369997	24387835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24382997_24383085_24386078_24386164_24386905
transcript_10005.nic	chr10	-	1412	9	ISM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	-14	9408	-14	-5474	5prime_fragment	FALSE	canonical	3	31	junction_8	48.863169923778	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACACCCCCAAACCCCA	5312	False	NA	NA	False	AAGAAA	-7	NA	68114584	67937757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_68021855_68022087_68078833_68079060_68113759_68114015_68114519
transcript_100051.known	chr5	-	4221	15	FSM	ENSMUSG00000038319.15	ENSMUST00000036092.10	4221	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	4.79157423749955	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCACCTGCTGTATCTC	NA	False	NA	-6	True	NA	NA	NA	24556602	24524586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943_24527220_24527652_24527753_24528068_24528263_24529330_24529584_24529953_24530154_24530491_24530880_24531346_24531776_24535908_24536121_24536660_24537111_24537889_24538055_24553308_24553540_24556205
transcript_100056.known	chr5	+	4132	26	FSM	ENSMUSG00000028978.13	ENSMUST00000030834.7	4132	26	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	2.97079114042034	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGACAGTTTTGCGCTTG	NA	False	NA	NA	False	AAAAAG	-13	NA	24569807	24589472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24570000_24571757_24571861_24572195_24572345_24572478_24572642_24573816_24573909_24573987_24574130_24574795_24574936_24575018_24575194_24575785_24575888_24576602_24576798_24576899_24576974_24577124_24577270_24577631_24577737_24582278_24582347_24582590_24582708_24582808_24582984_24584706_24584840_24584946_24585026_24585170_24585359_24585867_24586041_24586361_24586573_24586651_24586740_24587522_24587645_24588257_24588407_24588527_24588723_24588815
transcript_100059.nic	chr5	+	2165	11	NIC	ENSMUSG00000028978.13	novel	4132	26	NA	NA	12862	3	intron_retention	FALSE	canonical	2	4	junction_2	2.64764045897475	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGTGAGTTACAATGATT	4930	False	NA	NA	False	CATAAA	-27	NA	24582669	24589328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_24582984_24584706_24584840_24584946_24585026_24585170_24585359_24585867_24586041_24586361_24586573_24586651_24586740_24587522_24587645_24588257_24588407_24588527_24588723_24588815
transcript_100060.nnic	chr5	-	2650	10	NNC	ENSMUSG00000038295.15	novel	3902	14	NA	NA	1157	-181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	8.25967446224258	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCATTTTCAATCATTGT	8642	False	NA	NA	False	ATTAAA	-12	NA	24594476	24589359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592686_24593442_24594360
transcript_100062.nic	chr5	-	2038	9	NIC	ENSMUSG00000038295.15	novel	1837	10	NA	NA	51	-181	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	7.95986023746648	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCATTTTCAATCATTGT	9345	False	NA	NA	False	ATTAAA	-12	NA	24592913	24589359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592654
transcript_100069.known	chr5	-	2059	12	FSM	ENSMUSG00000028969.11	ENSMUST00000030814.11	2059	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	52.4982486917657	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGAAGCCAACCATGCC	NA	False	NA	-11	True	TATAAA	-5	NA	24628528	24623238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
transcript_10007.known	chr10	-	3025	7	FSM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_6	21.5303403492735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGGGGCTGGCTTGCAA	NA	False	NA	NA	False	NA	NA	NA	67972456	67932283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
transcript_100075.nic	chr5	-	1287	11	NIC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-63	191	intron_retention	FALSE	canonical	0	0	junction_3	55.0178152965019	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGATATGGTGGTGG	NA	False	NA	-9	True	CATAAA	-18	NA	24628591	24624182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627557_24627645_24627714_24627795_24627885_24628446
transcript_100083.known	chr5	+	4179	23	FSM	ENSMUSG00000028962.15	ENSMUST00000080067.13	4179	23	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	8.13471288485391	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTTGGTCTTGTGTCTTT	NA	False	NA	10	True	AGTAAA	-19	NA	24630229	24645948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24630434_24632520_24632635_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
transcript_100091.known	chr5	+	3924	22	FSM	ENSMUSG00000028962.15	ENSMUST00000115049.9	3924	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.8604840305893	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGGCTTGGTCTTGTGTC	NA	False	NA	7	True	AGTAAA	-16	NA	24633205	24645945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24633272_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
transcript_10010.nic	chr10	-	1060	6	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-284	5474	-284	-5474	5prime_fragment	FALSE	canonical	3	87	junction_5	23.2292918531754	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACACCCCCAAACCCCA	NA	False	NA	NA	False	AAGAAA	-7	NA	67972740	67937757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
transcript_100101.known	chr5	-	3056	10	FSM	ENSMUSG00000028959.15	ENSMUST00000115043.8	3056	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	392.424593684436	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAGAAAAAAAAAATAA	NA	False	NA	NA	False	ACTAAA	-10	NA	24650192	24643437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24644917_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
transcript_100109.known	chr5	-	1893	10	FSM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	0	0	0	0	multi-exon	FALSE	canonical	3	1073	junction_9	118.54686003725	1021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650285	24646036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
transcript_10011.nic	chr10	-	857	6	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-166	5559	-166	-5559	5prime_fragment	FALSE	canonical	3	87	junction_5	23.2292918531754	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATACACAGGAAAATGAGA	NA	False	NA	NA	False	NA	NA	NA	67972622	67937842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
transcript_10012.nic	chr10	-	1056	6	ISM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	-14	36308	-14	-32374	5prime_fragment	FALSE	canonical	3	31	junction_5	34.563564630981	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCATCGAGCGAATTCCC	5312	False	NA	NA	False	TATAAA	-20	NA	68114584	67964657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_67964824_67970823_67970937_68021855_68022087_68078833_68079060_68113759_68114015_68114519
transcript_100123.known	chr5	-	2552	9	FSM	ENSMUSG00000028959.15	ENSMUST00000149085.8	2552	9	0	0	0	0	multi-exon	FALSE	canonical	3	1095	junction_1	118.721049102508	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24650185	24646037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
transcript_10014.nic	chr10	-	813	5	ISM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	-14	42551	-14	-38617	5prime_fragment	FALSE	canonical	3	31	junction_4	8.5841423566947	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTCCCCAGAGAAGAGAT	5312	False	NA	NA	False	AAAAAG	-5	NA	68114584	67970900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_67970937_68021855_68022087_68078833_68079060_68113759_68114015_68114519
transcript_100148.nic	chr5	-	2764	8	NIC	ENSMUSG00000028959.15	novel	2552	9	NA	NA	-17	0	intron_retention	FALSE	canonical	3	1095	junction_1	125.764762593519	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGCTAAGTCTTGTTTC	NA	False	NA	-8	True	NA	NA	NA	24650302	24646040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647394_24648001_24648142_24648274_24648455_24648892
transcript_10015.nic	chr10	-	704	3	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-284	32374	-284	-32374	5prime_fragment	FALSE	canonical	3	87	junction_2	21.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCATCGAGCGAATTCCC	NA	False	NA	NA	False	TATAAA	-20	NA	67972740	67964657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_67964824_67970823_67970937_67972315
transcript_100150.nic	chr5	-	2734	8	NIC	ENSMUSG00000028959.15	novel	2552	9	NA	NA	-17	0	intron_retention	FALSE	canonical	3	1095	junction_1	123.84074697871	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGCTAAGTCTTGTTTC	NA	False	NA	-8	True	NA	NA	NA	24650302	24646040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
transcript_10016.nic	chr10	-	516	3	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-198	32476	-198	-32476	5prime_fragment	FALSE	canonical	3	87	junction_2	21.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTCAAATGAAGAAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	67972654	67964759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_67964824_67970823_67970937_67972315
transcript_100168.nic	chr5	-	2832	7	NIC	ENSMUSG00000028959.15	novel	2552	9	NA	NA	-17	0	intron_retention	FALSE	canonical	3	1095	junction_1	132.996762700785	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGCTAAGTCTTGTTTC	NA	False	NA	-8	True	NA	NA	NA	24650302	24646040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646822_24646921_24647394_24648001_24648142_24648274_24648455_24648892
transcript_10017.nic	chr10	-	757	2	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-580	38617	-580	-38617	5prime_fragment	FALSE	canonical	3	87	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTCCCCAGAGAAGAGAT	NA	False	NA	NA	False	AAAAAG	-5	NA	67973036	67970900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_67970937_67972315
transcript_10018.known	chr10	+	2231	2	FSM	ENSMUSG00000112275.2	ENSMUST00000218333.2	2231	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTGTTGTGTGTTCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	68148837	68162808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_68149041_68160780
transcript_10019.known	chr10	-	1262	8	FSM	ENSMUSG00000019945.11	ENSMUST00000020103.9	1262	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.349927106111883	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAACCAGCCTTTTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	68377726	68266782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_68267154_68272109_68272251_68272672_68272796_68345526_68345600_68352095_68352241_68361427_68361598_68369641_68369731_68377576
transcript_1002.known	chr1	-	2286	15	FSM	ENSMUSG00000046337.18	ENSMUST00000170295.8	2286	15	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	44.2795502622663	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGAGTTCCTTCCATC	NA	False	NA	3	True	ATTAAA	-22	NA	36722264	36601772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
transcript_100208.known	chr5	-	856	4	FSM	ENSMUSG00000028959.15	ENSMUST00000132498.2	856	4	0	0	0	0	multi-exon	FALSE	canonical	3	1099	junction_2	33.0689515339624	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGCTAGGGGAGGGGCAG	NA	False	NA	NA	False	AATACA	-2	NA	24648956	24646921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24647394_24648001_24648142_24648274_24648455_24648892
transcript_100210.known	chr5	-	1333	3	FSM	ENSMUSG00000028958.16	ENSMUST00000030799.15	1333	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	11	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGTGTGTTGCTTGA	NA	False	NA	4	True	ATTAAA	-26	NA	24652852	24650455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24651272_24651531_24651951_24652754
transcript_100213.nic	chr5	+	3897	18	NIC	ENSMUSG00000023353.15	novel	1770	9	NA	NA	-89	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_1	56.5819979441296	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTTCTCCTTTGGTG	NA	False	NA	11	True	AATAAA	-17	NA	24679122	24707035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_24680181_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24701730_24701902_24703067_24703206_24704655_24704811_24704912_24705004_24705120_24705344_24706007_24706264_24706394
transcript_100215.nnic	chr5	+	2913	17	NNC	ENSMUSG00000023353.15	novel	3207	18	NA	NA	-280	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.1661861905563	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTTCTCCTTTGGTG	NA	False	NA	11	True	AATAAA	-17	NA	24656894	24707035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_24657031_24657285_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24704655_24704811_24704912_24705004_24705120_24705344_24706007_24706264_24706394
transcript_100219.nic	chr5	+	3588	16	NIC	ENSMUSG00000023353.15	novel	1770	9	NA	NA	-89	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_1	43.4855787078378	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTTCTCCTTTGGTG	NA	False	NA	11	True	AATAAA	-17	NA	24679122	24707035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_24680181_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24704655_24704811_24704912_24705004_24705120_24705344_24706007_24706264_24706394
transcript_10022.known	chr10	+	4352	11	FSM	ENSMUSG00000019944.15	ENSMUST00000020101.12	4352	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.96816441593117	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCGACTTTTGTGTAAA	NA	False	NA	NA	False	AATAAA	-23	NA	69048463	69127621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_69048565_69051131_69051183_69084600_69084803_69085454_69085559_69102016_69102203_69105732_69106704_69108568_69108688_69115174_69115326_69121516_69121606_69124779_69124886_69125349
transcript_100222.known	chr5	+	2685	9	FSM	ENSMUSG00000023353.15	ENSMUST00000199856.2	2685	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	66.5934493775476	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTCTTGGTTCCTTCCCG	NA	False	NA	15	True	AATAAA	-15	NA	24679211	24688182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24680181_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24687263
transcript_10023.known	chr10	+	4422	11	FSM	ENSMUSG00000019944.15	ENSMUST00000067908.14	4422	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.33452350598575	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAAAAATGCCTCGAC	NA	False	NA	NA	False	AATAAA	-12	NA	69049023	69127610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_69049206_69051131_69051183_69084600_69084803_69085454_69085559_69102016_69102203_69105732_69106704_69108568_69108688_69115174_69115326_69121516_69121606_69124779_69124886_69125349
transcript_100237.known	chr5	-	2569	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	4534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	-29	True	AATAAA	-21	NA	24782465	24770342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
transcript_10027.known	chr10	-	2969	2	FSM	ENSMUSG00000090622.2	ENSMUST00000170048.2	2969	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTTGGTGTTTGTAATT	NA	False	NA	NA	False	AATAAA	-15	NA	69048928	69045591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_69048215_69048582
transcript_100274.nic	chr5	-	1242	8	ISM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	18	3446	18	-3446	5prime_fragment	FALSE	canonical	3	1197	junction_7	125.479325884744	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTACAGAAAATGATGGCA	NA	False	NA	NA	False	NA	NA	NA	24782447	24773788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
transcript_100279.known	chr5	-	1712	14	FSM	ENSMUSG00000028949.14	ENSMUST00000195943.2	1712	14	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_12	70.4408770513493	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	642	False	NA	0	True	ATTAAA	-17	NA	24829409	24797619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589_24803802_24827521_24827667_24829345
transcript_100281.known	chr5	-	1735	13	FSM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_12	43.1762376776856	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	6985	False	NA	0	True	ATTAAA	-17	NA	24807010	24797619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589_24803802_24806778
transcript_100294.known	chr5	+	3715	4	FSM	ENSMUSG00000038181.17	ENSMUST00000121863.5	3715	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	9.8770215933527	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTTTTAGGTCTAGG	NA	False	NA	3	True	ATTAAA	-14	NA	24791747	24797482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24793299_24794094_24794660_24795306_24795490_24796066
transcript_100298.known	chr5	+	5371	5	FSM	ENSMUSG00000038181.17	ENSMUST00000088295.9	5371	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	16.9022927438854	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTATCTACTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	24791738	24799393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24793299_24794094_24794660_24795306_24795490_24796066_24798352_24798615
transcript_10030.known	chr10	-	4375	8	FSM	ENSMUSG00000019942.14	ENSMUST00000020099.13	4375	8	0	0	0	0	multi-exon	TRUE	canonical	3	2056	junction_1	102.156542539739	573	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGACTTAAGCAGATGTTT	NA	False	NA	4	True	AATAAA	-23	NA	69188768	69170975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
transcript_100303.known	chr5	+	3269	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_1	91.6660977100463	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTCTGACGCAGTGA	NA	False	NA	11	True	AATAAA	-20	NA	24890821	24915376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
transcript_100309.known	chr5	+	3546	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	0	0	0	0	multi-exon	TRUE	canonical	3	299	junction_1	111.175284472544	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTGGTCTGACGCAGT	NA	False	NA	9	True	AATAAA	-18	NA	24890529	24915374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
transcript_100319.known	chr5	+	3862	14	FSM	ENSMUSG00000028954.12	ENSMUST00000200337.2	3862	14	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_1	95.1263252285049	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTGGTCTGACGCAGT	NA	False	NA	9	True	AATAAA	-18	NA	24890984	24915374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
transcript_100336.known	chr5	-	2364	6	FSM	ENSMUSG00000055235.12	ENSMUST00000068693.12	2364	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	2.85657137141714	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCAGGATTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	24935725	24916735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_24917750_24917847_24917952_24920523_24920660_24922964_24923386_24927632_24927775_24935178
transcript_100340.known	chr5	-	1784	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	0	0	0	0	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATCCTCCATCTCCTT	NA	False	NA	NA	False	NA	NA	NA	25047622	25007820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
transcript_100351.known	chr5	-	4046	3	FSM	ENSMUSG00000028945.10	ENSMUST00000154523.2	4046	3	0	0	0	0	multi-exon	FALSE	canonical	3	1592	junction_1	78.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	25047426	25015133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25018864_25022757_25022830_25047182
transcript_100353.known	chr5	-	3331	16	FSM	ENSMUSG00000028944.15	ENSMUST00000030784.14	3331	16	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_12	63.6806616381038	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTATGTATATGAGTAC	NA	False	NA	-5	True	AATAAA	-23	NA	25305640	25067741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320_25113391_25152421_25152637_25226789_25227070_25233462_25233535_25305008
transcript_100359.known	chr5	-	2205	12	FSM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	21.3386701313649	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTTTATGTATATGA	NA	False	NA	-9	True	AATAAA	-19	NA	25113467	25067745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
transcript_100361.known	chr5	-	890	10	FSM	ENSMUSG00000028944.15	ENSMUST00000150135.8	890	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_9	41.6092938336297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAACTTGGACATCACAG	NA	False	NA	NA	False	NA	NA	NA	25113507	25074252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320
transcript_100365.known	chr5	-	2010	5	FSM	ENSMUSG00000028944.15	ENSMUST00000139698.2	2010	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	24.6005589367396	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTTGAGGCCACATT	NA	False	NA	NA	False	AATAAA	-9	NA	25113450	25080397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
transcript_100369.known	chr5	+	2552	12	FSM	ENSMUSG00000038072.15	ENSMUST00000045737.14	2552	12	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_8	26.0711042984152	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGACTCTTCTATCTCT	NA	False	NA	13	True	AATAAA	-27	NA	25427879	25470916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_25428030_25452451_25452785_25453833_25453958_25455084_25455252_25457021_25457148_25459904_25460155_25462390_25462509_25463809_25463963_25466932_25467152_25468377_25468483_25469959_25470098_25470247
transcript_100376.known	chr5	+	4010	1	FSM	ENSMUSG00000038072.15	ENSMUST00000196213.2	4010	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAATGTTTGGGTA	NA	False	NA	NA	False	NA	NA	NA	25426901	25430911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_25426900_25430900
transcript_100377.nic	chr5	-	4300	26	ISM	ENSMUSG00000038056.16	ENSMUST00000045291.14	14967	59	-89	71357	-51	27870	5prime_fragment	FALSE	canonical	2	10	junction_14	3.12512399753994	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGATACCGAAAAAGGA	9365	False	NA	NA	False	AATAAA	-1	NA	25703832	25549963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_25550037_25552358_25552479_25554809_25554939_25556049_25556263_25557224_25557291_25558296_25558407_25559332_25559498_25559636_25559819_25564309_25564415_25564589_25564692_25568443_25568561_25571074_25571195_25577763_25578468_25579487_25579566_25580339_25580454_25580873_25581026_25582110_25582281_25590642_25590758_25592921_25593094_25600386_25600550_25609276_25609387_25610368_25610518_25614131_25614330_25619882_25620022_25648817_25648907_25703387
transcript_100380.nic	chr5	-	4094	24	ISM	ENSMUSG00000038056.16	ENSMUST00000045291.14	14967	59	-89	76216	-51	23011	5prime_fragment	FALSE	canonical	2	10	junction_12	3.24197424040126	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATACAGACCAGGTAGAGT	9365	False	NA	NA	False	CATAAA	-17	NA	25703832	25554822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_25554939_25556049_25556263_25557224_25557291_25558296_25558407_25559332_25559498_25559636_25559819_25564309_25564415_25564589_25564692_25568443_25568561_25571074_25571195_25577763_25578468_25579487_25579566_25580339_25580454_25580873_25581026_25582110_25582281_25590642_25590758_25592921_25593094_25600386_25600550_25609276_25609387_25610368_25610518_25614131_25614330_25619882_25620022_25648817_25648907_25703387
transcript_100387.known	chr5	-	2646	14	FSM	ENSMUSG00000038056.16	ENSMUST00000173174.2	2646	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5.63799452363344	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTGGCATGGGTAAAC	9444	False	NA	NA	False	NA	NA	NA	25703753	25577833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25578468_25579487_25579563_25580339_25580454_25580873_25581026_25582110_25582281_25590642_25590758_25592921_25593094_25600386_25600550_25609276_25609387_25610368_25610518_25614131_25614330_25619882_25620022_25648817_25648907_25703387
transcript_100390.known	chr5	-	14967	59	FSM	ENSMUSG00000038056.16	ENSMUST00000045291.14	14967	59	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_15	13.6789674252716	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTGGATTTTGCAGACA	9454	False	NA	NA	False	NA	NA	NA	25703743	25478606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486658_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25500395_25500609_25503867_25505575_25507703_25507937_25509675_25509740_25510906_25510986_25513436_25513549_25514597_25516418_25518253_25518547_25518977_25520874_25523989_25524173_25525304_25525379_25528649_25528865_25529086_25529220_25534020_25534141_25534238_25534272_25534444_25534574_25535793_25535899_25543410_25543580_25549905_25550037_25552358_25552479_25554809_25554939_25556049_25556263_25557224_25557291_25558296_25558407_25559332_25559498_25559636_25559819_25564309_25564415_25564589_25564692_25568443_25568561_25571074_25571195_25577763_25578468_25579487_25579566_25580339_25580454_25580873_25581026_25582110_25582281_25590642_25590758_25592921_25593094_25600386_25600550_25609276_25609387_25610368_25610518_25614131_25614330_25619882_25620022_25648817_25648907_25703387
transcript_100394.known	chr5	+	1961	1	FSM	ENSMUSG00000038044.9	ENSMUST00000045016.9	1961	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATGTTTTCCTTTTCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	25721064	25723025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_25721100_25723000
transcript_100395.nnic	chr5	-	3352	4	NNC	ENSMUSG00000028933.12	novel	3247	3	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	31.8852107828483	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTATATTTCATATTTTC	NA	False	NA	-12	True	AATACA	-11	NA	25910812	25894809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_25897827_25903248_25903331_25908295_25908412_25910675
transcript_100396.known	chr5	-	3247	3	FSM	ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	2.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTATATTTCATATTTTC	NA	False	NA	-12	True	AATACA	-11	NA	25910823	25894809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25897827_25903248_25903331_25910675
transcript_100397.known	chr5	-	1740	2	FSM	ENSMUSG00000028933.12	ENSMUST00000131308.2	1740	2	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAATAATAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25910762	25901677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_25903331_25910675
transcript_100400.known	chr5	+	1712	12	FSM	ENSMUSG00000056367.15	ENSMUST00000088244.6	1712	12	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_4	20.0016528242663	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGTTTATATTTCCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	25965023	26055340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_100405.nnic	chr5	+	1996	11	NIC	ENSMUSG00000056367.15	novel	1712	12	NA	NA	-53	0	combination_of_known_splicesites	TRUE	canonical	3	16	junction_6	37.7095478625772	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	10	True	AATAAA	-18	NA	25964941	26055686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_100406.known	chr5	+	2031	11	FSM	ENSMUSG00000056367.15	ENSMUST00000128727.8	2031	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	35.2080956599473	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	10	True	AATAAA	-18	NA	25964994	26055686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_25965127_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_100408.known	chr5	+	428	2	FSM	ENSMUSG00000056367.15	ENSMUST00000198693.2	428	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTTGTTATCCCCCTGG	NA	False	NA	NA	False	NA	NA	NA	25965036	25982338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_25965127_25982000
transcript_100409.known	chr5	+	4491	26	FSM	ENSMUSG00000061576.16	ENSMUST00000101471.4	4491	26	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_22	2.910395162173	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGGTTTTTTTTTTTTT	NA	False	NA	4	True	AATAAA	-14	NA	27466972	27932498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_27467360_27587752_27587868_27603911_27604011_27656185_27656281_27674408_27674484_27742979_27743033_27762549_27762632_27803799_27803921_27836376_27836532_27839506_27839605_27857174_27857299_27858697_27858737_27866584_27866693_27868427_27868520_27869710_27869759_27871407_27871527_27901847_27901896_27914447_27914547_27917605_27917676_27919369_27919565_27923451_27923507_27926042_27926155_27927670_27927730_27928369_27928443_27928538_27928613_27930602
transcript_100420.nnic	chr5	-	4019	21	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	-21	-1972	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	272.916374554551	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGAATTGGGTGATTATTT	NA	False	NA	-6	True	AATAAA	-14	NA	27996710	27947049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_27947502_27949112_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27985263_27985307_27988727_27988772_27993640_27993776_27996196
transcript_100423.known	chr5	-	5850	21	FSM	ENSMUSG00000002221.12	ENSMUST00000002291.12	5850	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	176.542771021642	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTGTTCTCACAATT	NA	False	NA	NA	False	AATAAA	-43	NA	27996548	27945077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_27947502_27949112_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27986419_27986484_27988727_27988772_27993640_27993776_27996196
transcript_10044.known	chr10	+	3557	20	FSM	ENSMUSG00000069601.15	ENSMUST00000182795.8	3557	20	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_13	28.4648784905052	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	69761909	69860456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_69762022_69763524_69763649_69768238_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69817992_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397_69851484_69859661
transcript_100456.known	chr5	+	2697	5	FSM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	0	0	0	0	multi-exon	FALSE	canonical	3	1125	junction_2	41.7215471908701	1241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTATTCCTGAGGTT	NA	False	NA	14	True	ATTAAA	-13	NA	28276360	28283660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
transcript_10046.known	chr10	+	5072	20	FSM	ENSMUSG00000069601.15	ENSMUST00000092433.12	5072	20	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_16	15.2197204046814	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGCTTGCCACTGTAGA	NA	False	NA	NA	False	NA	NA	NA	69761361	69860784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838432_69840439_69840822_69851397_69851484_69859661
transcript_100464.known	chr5	+	9510	19	FSM	ENSMUSG00000048271.15	ENSMUST00000059644.13	9510	19	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_15	26.3991792801721	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTTTGAAGAGTTTATT	NA	False	NA	4	True	AATAAA	-16	NA	28522174	28624237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28547392_28547513_28557469_28557642_28563271_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613249_28613460_28615568_28615758_28618284_28618374_28618565
transcript_100466.known	chr5	+	6256	18	FSM	ENSMUSG00000048271.15	ENSMUST00000114884.8	6256	18	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_5	33.4726040951925	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACCCTCATCTGTGTATT	NA	False	NA	7	True	CATAAA	-21	NA	28522174	28621103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28557469_28557642_28563271_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613249_28613460_28615568_28615758_28618284_28618374_28618565
transcript_100467.known	chr5	+	3955	7	FSM	ENSMUSG00000048271.15	ENSMUST00000030920.6	3955	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	25.4994553318737	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTATTTTGTATGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	28522199	28560577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28547392_28547513_28557469
transcript_100473.known	chr5	+	1032	6	FSM	ENSMUSG00000048271.15	ENSMUST00000090355.11	1032	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	51.3443278269372	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTTGTTTCCTTGATC	NA	False	NA	NA	False	ATTAAA	-15	NA	28522118	28557693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_28522409_28536108_28536188_28540819_28540869_28541971_28542049_28543993_28544307_28557469
transcript_100475.known	chr5	+	1600	10	FSM	ENSMUSG00000029130.13	ENSMUST00000001247.12	1600	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	13.0421917418852	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTAGCTAGTGTCTGA	NA	False	NA	89	True	AATAAA	-19	NA	29400994	29430520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_29401111_29401577_29401644_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
transcript_100486.known	chr5	-	4836	17	FSM	ENSMUSG00000010721.16	ENSMUST00000179191.6	4836	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	16.8800918243948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAACCTTATACTTGTT	NA	False	NA	NA	False	ATTAAA	-7	NA	29583388	29434811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29468392_29468474_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29498810_29498827_29551760_29551905_29566045_29566086_29568880_29568954_29583124
transcript_100488.known	chr5	-	4926	17	FSM	ENSMUSG00000010721.16	ENSMUST00000055195.11	4926	17	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	11.2080816266656	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTTTTATAAGTCCCT	NA	False	NA	NA	False	ATTAAA	-19	NA	29583382	29434799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29468392_29468474_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528904_29551764_29551905_29566045_29566086_29568880_29568954_29583124
transcript_10049.known	chr10	+	3751	20	FSM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_16	12.5742118370934	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCTGCAAATTTAAATAA	NA	False	NA	NA	False	NA	NA	NA	69761783	69860473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397_69851484_69859661
transcript_100501.nnic	chr5	+	2589	11	NNC	ENSMUSG00000001569.11	novel	9219	11	NA	NA	0	5121	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	52.8295371927485	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGGTGGCACGTGTCT	2959	False	NA	5	True	TTTAAA	-7	NA	29639661	29656474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29644885_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
transcript_100502.known	chr5	+	9219	11	FSM	ENSMUSG00000001569.11	ENSMUST00000001611.11	9219	11	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.8962259671911	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAGAAAAGACTGC	2959	False	NA	NA	False	NA	NA	NA	29639661	29662841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29645148_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
transcript_100510.known	chr5	-	2245	3	FSM	ENSMUSG00000001566.10	ENSMUST00000165512.4	2245	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGGACCACTTCTGTAC	NA	False	NA	NA	False	AGTAAA	-20	NA	29683468	29678031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_29679230_29679753_29679915_29682582
transcript_100516.known	chr5	+	5048	23	FSM	ENSMUSG00000039000.9	ENSMUST00000049453.9	5048	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	108.11846884684	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGGTCAGTTGTGTTCT	NA	False	NA	38	True	ATTAAA	-38	NA	29774239	29881090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_29774579_29792272_29792327_29794885_29794961_29795807_29795955_29802066_29802183_29803856_29804015_29805638_29805793_29806129_29806351_29807193_29807346_29811904_29812093_29819905_29819993_29824225_29824384_29824552_29824786_29836189_29836295_29837747_29837836_29840628_29840727_29842635_29842769_29851407_29851656_29863207_29863421_29868460_29868650_29868773_29868841_29872911_29873043_29879396
transcript_100519.nnic	chr5	+	4221	23	NNC	ENSMUSG00000039000.9	novel	5048	23	NA	NA	-17	-751	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	140.055390459254	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCGGGCTGCGTCTCTCC	NA	False	NA	24	True	ATTAAA	-16	NA	29774222	29880339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_29774579_29792272_29792327_29794885_29794961_29795807_29795955_29802066_29802183_29803856_29804015_29805638_29805793_29806129_29806351_29807193_29807346_29811904_29812093_29819905_29819993_29824318_29824384_29824552_29824786_29836189_29836295_29837747_29837836_29840628_29840727_29842635_29842769_29851407_29851656_29863207_29863421_29868460_29868650_29868773_29868841_29872911_29873043_29879396
transcript_100533.known	chr5	+	2918	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTGTGTGTATGTGC	4294	False	NA	33	True	AATAAA	-44	NA	29940685	29991476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
transcript_100540.known	chr5	+	1605	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTCTTGTGTCTGTGTG	4546	False	NA	42	True	AATAAA	-42	NA	29940937	29972101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
transcript_100543.known	chr5	+	1024	7	FSM	ENSMUSG00000029131.15	ENSMUST00000012734.10	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	922.805580222015	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTGTATTTGGTCAGA	4601	False	NA	13	True	AATAAA	-21	NA	29940992	29962967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29961231_29961337_29962545
transcript_100552.known	chr5	+	847	4	FSM	ENSMUSG00000029131.15	ENSMUST00000140376.2	847	4	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_3	589.11685315111	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTGTATGGAGTATATT	NA	False	NA	NA	False	ATTAAA	-19	NA	29969472	29986705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_29969529_29970503_29970646_29971322_29971394_29986127
transcript_100558.known	chr5	-	3884	8	FSM	ENSMUSG00000025747.13	ENSMUST00000141630.8	3884	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	887.115366493777	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30278579	30263199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_30266132_30266965_30267048_30268233_30268410_30269082_30269185_30273463_30273639_30274831_30274954_30276631_30276706_30278358
transcript_100562.known	chr5	-	3163	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	0	0	0	0	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTTGTTAAGACTGCTA	NA	False	NA	NA	False	NA	NA	NA	30278615	30263824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
transcript_100569.nic	chr5	-	2111	2	ISM	ENSMUSG00000025747.13	ENSMUST00000138520.2	663	4	-131	1999	-36	-1999	5prime_fragment	FALSE	canonical	3	1874	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAAGGAAAGTCAGTTA	NA	False	NA	NA	False	AAAAAG	-16	NA	30278651	30274887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_30276706_30278358
transcript_100571.known	chr5	+	2249	2	FSM	ENSMUSG00000104667.2	ENSMUST00000197982.2	2249	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGCTCTGGAGCACCA	NA	False	NA	NA	False	AATAAA	-14	NA	30297937	30302684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30298047_30300544
transcript_100573.known	chr5	-	2552	20	FSM	ENSMUSG00000025745.13	ENSMUST00000026843.12	2552	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	102.267992951223	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGCCTGTTTTCTTCT	NA	False	NA	-3	True	AATAAA	-23	NA	30359974	30324423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_30324959_30325042_30325064_30325717_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
transcript_100574.known	chr5	-	4017	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGCACAGCCTAGGTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	30360160	30323301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
transcript_10059.known	chr10	+	3825	19	FSM	ENSMUSG00000069601.15	ENSMUST00000182029.8	3825	19	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_18	22.7009544586419	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAATGCAGATGTATATA	NA	False	NA	15	True	AATAAA	-20	NA	69761634	69851635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838432_69840439_69840822_69851400
transcript_100590.known	chr5	-	1755	9	FSM	ENSMUSG00000025745.13	ENSMUST00000130358.2	1755	9	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	32.7335359379337	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTAATGCCAGG	NA	False	NA	NA	False	TATAAA	-6	NA	30359960	30338232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
transcript_100594.known	chr5	+	3865	6	FSM	ENSMUSG00000044576.7	ENSMUST00000058045.5	3865	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.83303027798234	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCCCTGGGTGTTGGCTGA	NA	False	NA	NA	False	AATAAA	-29	NA	30310158	30323376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30310402_30313249_30313391_30318281_30318413_30318923_30319986_30320884_30321055_30321258
transcript_100597.known	chr5	+	2033	16	FSM	ENSMUSG00000059447.14	ENSMUST00000026841.15	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_6	59.1301389591918	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGTCTCGTTATTAGTGG	NA	False	NA	10	True	AATAAA	-25	NA	30360245	30389591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
transcript_10060.nic	chr10	+	3272	19	ISM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	-181	8838	0	0	5prime_fragment	FALSE	canonical	3	64	junction_16	12.9177120246047	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAATGCAGATGTATATA	NA	False	NA	15	True	AATAAA	-20	NA	69761602	69851635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397
transcript_100600.known	chr5	+	2045	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114783.6	2045	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	145.866361974088	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGACTGTTCGTAGTCTC	NA	False	NA	-1	True	AATAAA	-14	NA	30360269	30389580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30360385_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
transcript_100606.known	chr5	-	3099	14	FSM	ENSMUSG00000067642.12	ENSMUST00000088117.11	3099	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	2.4973358585766	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAGAGGTCATTTACTAA	NA	False	NA	NA	False	AATAAA	-20	NA	30410720	30398428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_30398560_30400040_30400097_30400494_30400558_30400647_30400690_30401236_30402614_30403360_30403538_30404014_30404212_30404395_30404540_30405437_30405645_30407236_30407456_30407954_30408132_30408484_30408626_30409338_30409400_30410613
transcript_100611.known	chr5	+	6803	10	FSM	ENSMUSG00000075703.17	ENSMUST00000145167.9	6803	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	10.5725010181025	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTGTTTTCAAGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	30437578	30477425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30437814_30452460_30452530_30453409_30453519_30457707_30457783_30461075_30461339_30462709_30462819_30468068_30468118_30469272_30469454_30470335_30470522_30471898
transcript_100615.known	chr5	+	2471	17	FSM	ENSMUSG00000073102.8	ENSMUST00000101448.5	2471	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.992156741649222	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGAATGCTGTGAAAGAG	NA	False	NA	NA	False	AATAAA	-16	NA	30486385	30524039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30486605_30499007_30499096_30500011_30500125_30502834_30503019_30504399_30504538_30506006_30506094_30507744_30507868_30512482_30512623_30512955_30513091_30513608_30513842_30515806_30515920_30516911_30517002_30517344_30517432_30520346_30520619_30521298_30521443_30521731_30521835_30523837
transcript_100622.known	chr5	+	3088	6	FSM	ENSMUSG00000029175.18	ENSMUST00000062962.12	3088	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	8.49470423263812	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGACATTTTTTTAAATGAA	6678	False	NA	54	True	AATAAA	-14	NA	30805276	30817073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814202_30814720
transcript_100632.known	chr5	+	1007	7	FSM	ENSMUSG00000029177.10	ENSMUST00000134846.8	1007	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	786.091474038204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTTGCATCTTTTACT	9201	False	NA	11	True	NA	NA	NA	30824255	30831659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30824458_30826342_30826397_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
transcript_100635.known	chr5	+	1031	6	FSM	ENSMUSG00000029177.10	ENSMUST00000133316.8	1031	6	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_2	579.285905231605	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAAGCGCTTGAATCT	9186	False	NA	9	True	AATATA	-14	NA	30824240	30831722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
transcript_10064.nic	chr10	+	3564	18	ISM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	-126	19067	9	852	5prime_fragment	FALSE	canonical	3	64	junction_16	12.4850083110085	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCTCTCACCAATGAAAG	NA	False	NA	NA	False	ATTAAA	-19	NA	69761657	69841406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439
transcript_100647.known	chr5	+	827	5	FSM	ENSMUSG00000029177.10	ENSMUST00000199617.2	827	5	0	0	0	0	multi-exon	TRUE	canonical	3	33	junction_3	705.72033235553	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9287	False	NA	17	True	AATAAA	-1	NA	30824341	30831730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830610_30830788_30831381
transcript_100648.known	chr5	+	1466	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	0	0	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	201.219407612685	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGTAAAGTTACTGTAA	9066	False	NA	NA	False	AATGAA	-5	NA	30824120	30832174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
transcript_100651.known	chr5	+	1120	4	FSM	ENSMUSG00000029177.10	ENSMUST00000150810.8	1120	4	0	0	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	232.020592955788	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTGGCAGTCCCGCCATA	9224	False	NA	40	True	AATAAA	-24	NA	30824278	30831753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830788_30831381
transcript_100656.known	chr5	+	5191	13	FSM	ENSMUSG00000029168.15	ENSMUST00000114729.8	5191	13	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_9	9.12718771339538	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTGTGTTTTTTCAAG	NA	False	NA	11	True	ATTAAA	-23	NA	30868907	30956719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30946042_30946185_30948835_30948979_30949463_30949672_30951277_30951447_30953580
transcript_100662.nic	chr5	+	1354	9	NIC	ENSMUSG00000029168.15	novel	5191	13	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	19.6050854372023	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATGATAATAAAAAA	NA	False	NA	-94	True	NA	NA	NA	30869175	30944278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30944046
transcript_100663.nic	chr5	+	1449	9	NIC	ENSMUSG00000029168.15	novel	5191	13	NA	NA	-62	95	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	19.6050854372023	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATTTGTCCCTTATTTT	NA	False	NA	1	True	AATAAA	-10	NA	30869175	30944373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30944046
transcript_100664.known	chr5	+	1816	7	FSM	ENSMUSG00000029166.15	ENSMUST00000200692.4	1816	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	4.56131072780134	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGATTTCCTCAATTGA	2319	False	NA	13	True	AATAAA	-13	NA	30972097	31023403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30972243_31019150_31019279_31019841_31019988_31020547_31020705_31021917_31022073_31022158_31022312_31022471
transcript_100665.known	chr5	+	2021	7	FSM	ENSMUSG00000029166.15	ENSMUST00000031058.15	2021	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	5.53774924194538	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTCTGTCTTTTGTAAG	2206	False	NA	60	True	NA	NA	NA	30971984	31023450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_30972243_31019150_31019279_31019841_31019988_31020547_31020750_31021917_31022073_31022158_31022312_31022471
transcript_100675.known	chr5	+	6110	17	FSM	ENSMUSG00000038828.14	ENSMUST00000201203.4	6110	17	0	0	0	0	multi-exon	TRUE	canonical	3	358	junction_2	22.5422346662881	1028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGGGCTCATACCTGCA	NA	False	NA	NA	False	GATAAA	-13	NA	31025355	31036524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
transcript_10068.nic	chr10	+	3745	16	ISM	ENSMUSG00000069601.15	ENSMUST00000182029.8	3825	19	39	15052	25	1050	5prime_fragment	FALSE	canonical	3	68	junction_4	11.2853887837327	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCAATGTTGTGTGGTTCC	NA	False	NA	NA	False	ATTAAA	-31	NA	69761673	69836583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184
transcript_100685.known	chr5	+	3947	16	FSM	ENSMUSG00000038828.14	ENSMUST00000202951.4	3947	16	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_2	23.0143916326768	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTATGTGTTTTGCTAGCT	NA	False	NA	NA	False	TTTAAA	-13	NA	31026976	31035708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
transcript_100690.known	chr5	+	2220	16	FSM	ENSMUSG00000038828.14	ENSMUST00000114716.4	2220	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	100.591230013136	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCATCACTCAAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	31026974	31034388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
transcript_1007.nnic	chr1	-	2182	14	NIC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	22	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	52.7337849106805	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTCTGGAGTTCCTTC	NA	False	NA	-1	True	ATTAAA	-18	NA	36722242	36601776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_36602102_36603410_36603564_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
transcript_100725.known	chr5	+	3296	17	FSM	ENSMUSG00000029165.18	ENSMUST00000114700.9	3296	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	14.1548357461328	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGTAGTTGCTTTGTAT	NA	False	NA	10	True	AATAAA	-18	NA	31046349	31064010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31046426_31047463_31047725_31047942_31048115_31048217_31048305_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
transcript_100729.known	chr5	+	3579	16	FSM	ENSMUSG00000029165.18	ENSMUST00000201917.4	3579	16	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	10.2792131129879	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACATGGAAATAAGTCTC	NA	False	NA	NA	False	CATAAA	-15	NA	31046278	31064309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31046426_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
transcript_100731.nic	chr5	+	3724	16	NIC	ENSMUSG00000029165.18	novel	3296	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	6.71118469422501	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGTAGTTGCTTTGTAT	NA	False	NA	10	True	AATAAA	-18	NA	31046277	31064010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_31046869_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31063106_31063459
transcript_100734.known	chr5	+	3199	15	FSM	ENSMUSG00000029165.18	ENSMUST00000201168.4	3199	15	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	13.4651856463175	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGTAGTTGCTTTGTAT	NA	False	NA	10	True	AATAAA	-18	NA	31046312	31064010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31046426_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062974_31063106_31063459
transcript_100742.known	chr5	+	2646	12	FSM	ENSMUSG00000029165.18	ENSMUST00000201225.4	2646	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	11.6930437751371	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTGGATGACTACTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	31046349	31060831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31046426_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396
transcript_100744.known	chr5	+	3121	12	FSM	ENSMUSG00000029165.18	ENSMUST00000202060.4	3121	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	7.05585742252082	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTGGATGACTACTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	31046317	31060831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31046869_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109_31053325_31060396
transcript_100745.known	chr5	+	2352	11	FSM	ENSMUSG00000029165.18	ENSMUST00000201918.4	2352	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	11.9733036376766	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGCAGAAGACGCTGCAG	NA	False	NA	NA	False	AATAAA	-8	NA	31046312	31053428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31046426_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109
transcript_100746.nic	chr5	+	2840	11	ISM	ENSMUSG00000029165.18	ENSMUST00000202060.4	3121	12	-40	7393	-1	0	5prime_fragment	TRUE	canonical	3	26	junction_1	6.64529909033446	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCTGCAGCCTGTCCTGC	NA	False	NA	NA	False	AATAAA	-18	NA	31046277	31053438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_31046869_31047463_31047725_31047942_31048115_31048403_31048568_31049156_31049335_31049781_31049961_31050348_31050806_31051244_31051415_31051718_31051855_31052340_31052544_31053109
transcript_100749.known	chr5	-	1144	3	FSM	ENSMUSG00000038803.8	ENSMUST00000132253.5	1144	3	0	0	0	0	multi-exon	FALSE	canonical	3	823	junction_2	132.5	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAAAGTGCATTTAGTC	NA	False	NA	NA	False	AATAAA	-19	NA	31065132	31063228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31064111_31064742_31064881_31065008
transcript_100750.known	chr5	-	576	2	FSM	ENSMUSG00000038803.8	ENSMUST00000132034.5	576	2	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTTGTGGTCCCAAA	NA	False	NA	-5	True	NA	NA	NA	31065069	31063861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31064111_31064742
transcript_100751.known	chr5	+	3852	8	FSM	ENSMUSG00000029163.10	ENSMUST00000031055.8	3852	8	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_1	4.70345075232981	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTATTCTGCTCTAGTAC	NA	False	NA	22	True	AATAAA	-27	NA	31070745	31078621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31071389_31072325_31072452_31072860_31073082_31074277_31076204_31076599_31076717_31077274_31077293_31077423_31077562_31077958
transcript_100752.nnic	chr5	+	2974	6	NNC	ENSMUSG00000029163.10	novel	601	3	NA	NA	2468	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	6.09918027279076	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTATTCTGCTCTAGTAC	NA	False	NA	22	True	AATAAA	-27	NA	31073550	31078621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_31073663_31074277_31076204_31076599_31076717_31077274_31077293_31077423_31077562_31077958
transcript_100754.known	chr5	+	1583	8	FSM	ENSMUSG00000029162.16	ENSMUST00000201621.4	1583	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11.1446884941955	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTGTCTGTCTGTCTG	983	False	NA	9	True	AATAAA	-18	NA	31078774	31088592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31079352_31082082_31082200_31084365_31084501_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
transcript_100755.known	chr5	+	1087	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCAAGCGGCACCAGCT	1142	False	NA	NA	False	NA	NA	NA	31078933	31088390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
transcript_100757.known	chr5	-	1442	6	FSM	ENSMUSG00000029161.9	ENSMUST00000031051.9	1442	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	4.51663591625449	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTCCTTGGTCCAG	5296	False	NA	1	True	AATAAA	-25	NA	31102935	31090486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31091333_31091503_31091626_31091722_31091794_31091886_31091953_31093221_31093325_31102701
transcript_100762.known	chr5	+	1352	9	FSM	ENSMUSG00000006638.16	ENSMUST00000201125.4	1352	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	7.48331477354788	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	False	NA	19	True	ATTAAA	-21	NA	31107409	31112435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
transcript_100767.known	chr5	-	6300	9	FSM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_7	28.1735691739616	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTAGATTGTGTTATTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	31117705	31108196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
transcript_10077.known	chr10	+	3756	6	FSM	ENSMUSG00000037762.7	ENSMUST00000046807.7	3756	6	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	10.3846039885977	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTTGTTTTCGTCAATA	NA	False	NA	22	True	AATAAA	-30	NA	70080929	70121798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_70081209_70091789_70092023_70102921_70103066_70110755_70110852_70118118_70119028_70119703
transcript_100773.known	chr5	-	1869	8	FSM	ENSMUSG00000045302.14	ENSMUST00000202567.2	1869	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	89.9026684582742	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31113082_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
transcript_100777.nic	chr5	-	2364	8	NIC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	31	-1	intron_retention	FALSE	canonical	3	234	junction_6	22.518926280272	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCAGCAGTCCTCTTGT	NA	False	NA	-9	True	AATAAA	-20	NA	31117674	31112387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116757_31117314
transcript_100803.nic	chr5	-	3182	18	NIC	ENSMUSG00000006641.13	novel	3078	18	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_17	22.1293773649543	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	709	False	NA	-2	True	AATAAA	-18	NA	31205447	31193380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
transcript_100804.known	chr5	-	3436	18	FSM	ENSMUSG00000006641.13	ENSMUST00000114668.7	3436	18	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_17	28.8754634169437	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	250	False	NA	-1	True	AATAAA	-19	NA	31205906	31193379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205515
transcript_100805.known	chr5	-	3218	18	FSM	ENSMUSG00000006641.13	ENSMUST00000080431.8	3218	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_17	31.4360998487793	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	NA	False	NA	-1	True	AATAAA	-19	NA	31206268	31193379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31206095
transcript_100806.nic	chr5	-	2688	18	NIC	ENSMUSG00000006641.13	novel	3078	18	NA	NA	-24	356	combination_of_known_junctions	FALSE	canonical	3	63	junction_17	22.1293773649543	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGGCATTTGATTAAGTG	709	False	NA	NA	False	AATAAA	-18	NA	31205447	31193874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
transcript_100822.known	chr5	+	840	7	FSM	ENSMUSG00000013622.16	ENSMUST00000200942.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	101.141402666432	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGCTGCCGTACCTGT	932	False	NA	7	True	AATAAA	-20	NA	31206002	31211962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31206101_31206805_31206828_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
transcript_100823.known	chr5	+	966	7	FSM	ENSMUSG00000013622.16	ENSMUST00000013766.13	966	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	22.1108319357027	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTACCTGTGCGTG	908	False	NA	12	True	AATAAA	-25	NA	31205978	31211967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
transcript_100824.known	chr5	+	548	7	FSM	ENSMUSG00000013622.16	ENSMUST00000200748.4	548	7	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_6	104.663614605183	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGGAAAGCCAAGGCTTCA	995	False	NA	NA	False	NA	NA	NA	31206065	31211688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211658
transcript_100830.known	chr5	+	1696	5	FSM	ENSMUSG00000013622.16	ENSMUST00000201887.4	1696	5	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	26.2202212042538	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAATGCTGCCGTACCTG	594	False	NA	6	True	AATAAA	-19	NA	31205664	31211961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31210229_31211304_31211403_31211606
transcript_100831.known	chr5	-	3248	17	FSM	ENSMUSG00000006641.13	ENSMUST00000202520.4	3248	17	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_13	19.5252240704172	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	810	False	NA	-1	True	AATAAA	-19	NA	31205346	31193379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973
transcript_100832.known	chr5	-	3078	18	FSM	ENSMUSG00000006641.13	ENSMUST00000202556.4	3078	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	33.6216481587904	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	803	False	NA	-2	True	AATAAA	-18	NA	31205353	31193380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201926_31204973_31205144_31205309
transcript_100834.known	chr5	+	7137	44	FSM	ENSMUSG00000013629.17	ENSMUST00000013773.12	7137	44	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_6	136.90610173497	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	7053	False	NA	18	True	AATAAA	-14	NA	31212123	31235823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
transcript_100838.nic	chr5	+	4141	24	ISM	ENSMUSG00000013629.17	ENSMUST00000202795.4	6559	44	-181	7791	-33	-1753	5prime_fragment	TRUE	canonical	3	481	junction_6	65.7973919421539	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAGAACATCCTGCTGAC	7020	False	NA	NA	False	NA	NA	NA	31212090	31227785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638
transcript_100840.known	chr5	+	3153	18	FSM	ENSMUSG00000013629.17	ENSMUST00000201838.4	3153	18	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_6	57.9819802576807	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTCTGTGCCTGAATC	7084	False	NA	NA	False	TATAAA	-4	NA	31212154	31225107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743
transcript_100844.known	chr5	+	1565	6	FSM	ENSMUSG00000053856.8	ENSMUST00000066544.5	1565	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	5.93295878967653	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGTGTGTGTGGGACCC	NA	False	NA	5	True	AATAAA	-17	NA	31265662	31269870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31265766_31266230_31266347_31266838_31267053_31267521_31267664_31268456_31268524_31268947
transcript_100845.known	chr5	+	670	5	FSM	ENSMUSG00000053856.8	ENSMUST00000202760.4	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6.86931583201704	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTATCCACATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	31265660	31269187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31265766_31266230_31266347_31267521_31267664_31268456_31268524_31268947
transcript_100847.nic	chr5	+	2090	5	NIC	ENSMUSG00000053856.8	novel	1565	6	NA	NA	-21	0	intron_retention	FALSE	canonical	3	16	junction_4	4.32290411644765	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGTGTGTGTGGGACCC	NA	False	NA	5	True	AATAAA	-17	NA	31265629	31269870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_31265766_31266230_31267053_31267521_31267664_31268456_31268524_31268947
transcript_100848.known	chr5	-	2089	8	FSM	ENSMUSG00000029151.15	ENSMUST00000031037.14	2089	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	6.02037357305871	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	3744	False	NA	0	True	AATAAA	-19	NA	31250959	31243449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31250606
transcript_100849.known	chr5	-	1989	9	FSM	ENSMUSG00000029151.15	ENSMUST00000202740.4	1989	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	11.1551557586616	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	NA	False	NA	0	True	AATAAA	-19	NA	31265581	31243449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31251827_31251901_31265401
transcript_100850.known	chr5	+	1434	9	FSM	ENSMUSG00000062077.15	ENSMUST00000013771.15	1434	9	0	0	0	0	multi-exon	TRUE	canonical	2	14	junction_1	4.29389100932942	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCGGCTCCTTTTGCTGT	NA	False	NA	6	True	AATAAA	-19	NA	31274055	31294972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31274422_31288385_31288559_31289331_31289504_31291393_31291490_31293386_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294820
transcript_100857.nic	chr5	-	3930	20	NIC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	-12	-247	combination_of_known_junctions	TRUE	canonical	3	165	junction_17	146.210507369935	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTCTTTATATCAAGTC	NA	False	NA	NA	False	AGTAAA	-16	NA	31337500	31314111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575_31331840_31337227
transcript_10086.known	chr10	+	3380	15	FSM	ENSMUSG00000043259.16	ENSMUST00000105436.9	3380	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	8.58332507759989	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTATTATGTTGAAAGC	9686	False	NA	NA	False	AATAAA	-14	NA	70276497	70394559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_70276729_70276866_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388858_70389056_70390317_70390420_70393069
transcript_100867.nic	chr5	-	3493	20	NIC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	-18	233	combination_of_known_junctions	FALSE	canonical	3	165	junction_17	146.210507369935	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGTGAGTGGGTGTTT	NA	False	NA	-3	True	AGTAAA	-21	NA	31337506	31314554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575_31331840_31337227
transcript_100878.known	chr5	-	4552	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGGCTTGTCCTG	NA	False	NA	-26	True	AATAAA	-19	NA	31337488	31313348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
transcript_10089.known	chr10	+	3262	14	FSM	ENSMUSG00000043259.16	ENSMUST00000062883.7	3262	14	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_11	8.57062549069641	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTATGTTGAAAGCAC	9944	False	NA	NA	False	AATAAA	-16	NA	70276755	70394561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388858_70389056_70390317_70390420_70393069
transcript_100898.known	chr5	-	4718	18	FSM	ENSMUSG00000106864.4	ENSMUST00000202254.4	4718	18	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_17	85.762849975885	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGGCTTGTCCTG	NA	False	NA	-26	True	AATAAA	-19	NA	31337476	31313348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
transcript_10090.known	chr10	+	3310	14	FSM	ENSMUSG00000043259.16	ENSMUST00000173042.9	3310	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	7.58072922754149	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGTTGAAAGCACAGTAA	9898	False	NA	NA	False	AATAAA	-21	NA	70276709	70394566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388861_70389056_70390317_70390420_70393069
transcript_10091.nic	chr10	+	1223	9	ISM	ENSMUSG00000043259.16	ENSMUST00000220442.2	2720	11	-75	9313	-37	-8526	5prime_fragment	FALSE	canonical	3	19	junction_8	8.56500875656295	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTGAACAAGAAAAGAAATA	9649	False	NA	NA	False	AAGAAA	-3	NA	70276460	70372310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_70276729_70276866_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195
transcript_100916.known	chr5	-	878	8	FSM	ENSMUSG00000107283.4	ENSMUST00000200864.4	878	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	132.664376283514	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACAAACATGTATATACCC	NA	False	NA	-72	True	NA	NA	NA	31311536	31298884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311434
transcript_100918.known	chr5	-	903	8	FSM	ENSMUSG00000107283.4	ENSMUST00000202241.4	903	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	130.575335984048	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCATGCTATGGGGTTG	NA	False	NA	11	True	NA	NA	NA	31311572	31298801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31299195_31302043_31302097_31302583_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
transcript_100919.known	chr5	-	923	7	FSM	ENSMUSG00000107283.4	ENSMUST00000201491.2	923	7	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	59.0705792534095	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGAGATGGTGCAGTGA	NA	False	NA	NA	False	NA	NA	NA	31311565	31301617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
transcript_100920.known	chr5	+	2019	16	FSM	ENSMUSG00000029146.15	ENSMUST00000200730.4	2019	16	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	132.900564332888	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTACCTTTGGTTCCCTC	NA	False	NA	15	True	ATTAAA	-15	NA	31350637	31356238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352549_31352624_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
transcript_100927.known	chr5	+	2018	15	FSM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	0	0	0	0	multi-exon	TRUE	canonical	3	351	junction_8	24.4791664857432	1128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTCCCTCTCACTG	NA	False	NA	21	True	ATTAAA	-21	NA	31350570	31356244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
transcript_10093.known	chr10	-	2877	5	FSM	ENSMUSG00000037747.10	ENSMUST00000046513.10	2877	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	4.33012701892219	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCGCTAGCAGGTAGCCT	NA	False	NA	NA	False	AATAAA	-24	NA	70435121	70393511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_70395612_70401003_70401122_70404731_70404907_70406652_70406850_70434834
transcript_10094.known	chr10	-	3231	22	FSM	ENSMUSG00000014329.15	ENSMUST00000014473.6	3231	22	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	4.79370335301786	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70995520	70760931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_70761209_70763544_70763625_70766420_70766521_70767914_70768076_70771661_70771819_70776315_70776471_70776829_70776870_70779199_70779366_70781054_70781212_70782374_70782508_70782634_70782832_70783601_70783764_70785768_70785956_70789224_70789357_70791953_70792206_70792851_70793047_70793490_70793545_70794603_70794763_70796964_70797045_70863727_70863798_70915019_70915067_70995250
transcript_100944.known	chr5	-	2025	13	FSM	ENSMUSG00000029145.13	ENSMUST00000077693.10	2025	13	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	56.1372326436643	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCCTTTGTATCTT	NA	False	NA	0	True	AATAAA	-24	NA	31350774	31344901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350336
transcript_100945.known	chr5	-	1878	13	FSM	ENSMUSG00000029145.13	ENSMUST00000166769.8	1878	13	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_12	174.191864205983	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTGCCTTTGTATCT	NA	False	NA	-1	True	AATAAA	-23	NA	31350483	31344902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
transcript_10095.known	chr10	-	5431	21	FSM	ENSMUSG00000014329.15	ENSMUST00000143791.8	5431	21	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	4.36205226928793	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATATGTGTCTCTTTTCTTT	NA	False	NA	NA	False	AATAAA	-35	NA	70995530	70758661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_70761209_70766420_70766521_70767914_70768076_70771661_70771819_70776315_70776471_70776829_70776870_70779199_70779366_70781054_70781212_70782374_70782508_70782634_70782832_70783601_70783764_70785768_70785956_70789224_70789357_70791953_70792206_70792851_70793047_70793490_70793545_70794603_70794763_70796964_70797045_70863727_70863798_70915019_70915067_70995250
transcript_10097.known	chr10	-	899	7	FSM	ENSMUSG00000003923.15	ENSMUST00000121685.8	899	7	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_6	143.827056641726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTCAAAGCCTTAAAGTG	NA	False	NA	NA	False	AAGAAA	-8	NA	71073508	71064341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073287
transcript_100970.known	chr5	-	2228	4	FSM	ENSMUSG00000043059.17	ENSMUST00000114590.8	2228	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	5.79271573232759	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTCTCTGCTGAATTG	NA	False	NA	-17	True	AATAAA	-16	NA	31359647	31356324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31357492_31357578_31358167_31358926_31359083_31359330
transcript_100975.known	chr5	-	1966	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350358	31344911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
transcript_10098.known	chr10	-	4167	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGTTTTTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	71074110	71061293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
transcript_100981.known	chr5	-	2307	10	FSM	ENSMUSG00000029147.12	ENSMUST00000031032.11	2307	10	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_8	38.6382398699386	1845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGCTCATAGTGTCCTGC	NA	False	NA	-5	True	ACTAAA	-18	NA	31378031	31360011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646
transcript_100998.known	chr5	-	1797	1	FSM	ENSMUSG00000029147.12	ENSMUST00000200740.2	1797	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31377909	31376112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31376100_31377900
transcript_100999.nic	chr5	+	2123	19	NIC	ENSMUSG00000029148.16	novel	2203	18	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_2	109.789191939219	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTGCTTGCGGC	NA	False	NA	33	True	AATAAA	-21	NA	31398202	31408910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_31398347_31401106_31401177_31401261_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
transcript_101002.known	chr5	+	2203	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_13	30.9676692663879	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTGCTTGCGGC	NA	False	NA	33	True	AATAAA	-21	NA	31398207	31408910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
transcript_101008.known	chr5	+	580	6	FSM	ENSMUSG00000029148.16	ENSMUST00000202842.4	580	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	178.872692158417	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGTACATAGAGAAGCT	NA	False	NA	NA	False	AAAAAG	-20	NA	31398220	31402305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31398347_31401106_31401177_31401261_31401336_31401509_31401633_31401801_31401904_31402220
transcript_101010.known	chr5	+	904	7	FSM	ENSMUSG00000029149.15	ENSMUST00000054829.13	904	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_6	21.1344899788631	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409049	31410541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410441
transcript_101011.known	chr5	+	902	7	FSM	ENSMUSG00000029149.15	ENSMUST00000201625.4	902	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	34.830143394607	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATTACAGTTACTTG	NA	False	NA	9	True	AATAAA	-21	NA	31409065	31410546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410352_31410437
transcript_101015.nic	chr5	+	1062	6	NIC	ENSMUSG00000029149.15	novel	902	7	NA	NA	-25	0	intron_retention	FALSE	canonical	1	1	junction_5	37.992630864419	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATTACAGTTACTTG	NA	False	NA	9	True	AATAAA	-21	NA	31409009	31410546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410352_31410437
transcript_101022.known	chr5	+	1027	6	FSM	ENSMUSG00000029149.15	ENSMUST00000201333.4	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	7.52063827078527	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409034	31410541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
transcript_101023.known	chr5	-	5403	48	FSM	ENSMUSG00000038564.12	ENSMUST00000041565.11	5403	48	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_37	14.3941162971073	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGCATTCTTTGCTCAA	NA	False	NA	1	True	ATTAAA	-20	NA	31448451	31410620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745_31411806_31411996_31412093_31412594_31412715_31412908_31413020_31413898_31414016_31414232_31414320_31414674_31414739_31414860_31414971_31415157_31415257_31417737_31417868_31417966_31418077_31418270_31418452_31418782_31418848_31419174_31419269_31420263_31420407_31420709_31420827_31420914_31421051_31421121_31421220_31421750_31421841_31422661_31422807_31422986_31423108_31423258_31423338_31423518_31423768_31423978_31424057_31424577_31424671_31424938_31425024_31428983_31429092_31429330_31429468_31433195_31433364_31434212_31434326_31437762_31437849_31438009_31438114_31438305_31438360_31438687_31438850_31439899_31439996_31440376_31440501_31441347_31441563_31442595_31442684_31442802_31442883_31443106_31443173_31443421_31443462_31443920_31444034_31444237_31444382_31448317
transcript_101028.known	chr5	-	742	5	FSM	ENSMUSG00000038564.12	ENSMUST00000201426.4	742	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	11.2110436623893	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCTGCATTCTTTGCT	NA	False	NA	-2	True	ATTAAA	-17	NA	31411997	31410623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745
transcript_101029.known	chr5	-	1375	8	FSM	ENSMUSG00000038552.15	ENSMUST00000041266.11	1375	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.19977323905952	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGACTGGTTCCTGTAT	NA	False	NA	NA	False	AATAAA	-17	NA	31453215	31450229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31450509_31450757_31450831_31451029_31451158_31451447_31451538_31451973_31452179_31452349_31452466_31452556_31452702_31452876
transcript_101031.known	chr5	-	2333	7	FSM	ENSMUSG00000038552.15	ENSMUST00000172435.8	2333	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	5.32290647422377	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTTCTGGGACCTATT	NA	False	NA	NA	False	AATAAA	-39	NA	31453280	31449585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31450831_31451029_31451158_31451447_31451538_31451973_31452179_31452349_31452466_31452556_31452702_31452876
transcript_101043.known	chr5	+	3299	14	FSM	ENSMUSG00000062761.8	ENSMUST00000076264.8	3299	14	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	41.4283440690995	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7146	False	NA	16	True	AATAAA	-17	NA	31609778	31639098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
transcript_101047.nic	chr5	+	3263	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	77.4128093764563	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7123	False	NA	16	True	AATAAA	-17	NA	31609755	31639098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_31609922_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
transcript_101053.known	chr5	+	331	2	FSM	ENSMUSG00000062761.8	ENSMUST00000201599.2	331	2	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTGGACAGTGCAGATAA	7229	False	NA	NA	False	NA	NA	NA	31609861	31610769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31609922_31610498
transcript_101063.known	chr5	+	3144	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTGGCTAAGATTCATT	NA	False	NA	NA	False	NA	NA	NA	31652084	31670248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
transcript_101072.nic	chr5	+	2172	13	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-40	558	intron_retention	FALSE	canonical	3	859	junction_7	68.3745302644844	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGGTAAGCTTTCCTG	NA	False	NA	26	True	GATAAA	-15	NA	31652044	31668761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
transcript_10109.known	chr10	-	1431	7	FSM	ENSMUSG00000019927.7	ENSMUST00000020085.7	1431	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	5.39804491356722	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTTGACTACTTAATGCA	NA	False	NA	0	True	AATAAA	-18	NA	71121092	71090809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_71091705_71092444_71092539_71094030_71094137_71095571_71095650_71097913_71097946_71098028_71098093_71120930
transcript_101090.known	chr5	+	2499	14	FSM	ENSMUSG00000029141.17	ENSMUST00000202950.4	2499	14	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	21.8978262140197	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	NA	False	NA	11	True	AGTAAA	-21	NA	31684355	31711386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705954_31706026_31708056_31708127_31711082
transcript_101091.nic	chr5	+	2513	14	NIC	ENSMUSG00000029141.17	novel	2499	14	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_11	26.2556840845094	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684333	31711381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705957_31706026_31708056_31708127_31711082
transcript_101093.known	chr5	+	2424	13	FSM	ENSMUSG00000029141.17	ENSMUST00000114533.9	2424	13	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	19.394300422776	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684338	31711381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705954_31706026_31708056_31708127_31711082
transcript_101101.known	chr5	+	2109	8	FSM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	11.004637241469	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTTGTTTTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-20	NA	31684355	31694166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481
transcript_101109.known	chr5	-	2693	5	FSM	ENSMUSG00000053134.14	ENSMUST00000065388.11	2693	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	3.34477204006491	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTCCAATTCTTTTTTA	NA	False	NA	5	True	AATAAA	-25	NA	31684117	31671907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997_31680606_31683958
transcript_10111.known	chr10	-	1084	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	82	568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGGCTCTGTAACGG	1253	False	NA	7	True	AATAAA	-27	NA	71180784	71166309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_71166957_71172043_71172250_71180553
transcript_101110.known	chr5	+	659	4	FSM	ENSMUSG00000029141.17	ENSMUST00000201460.2	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	12.4988888395018	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTAGTTCCAAGTGTGGGC	NA	False	NA	NA	False	NA	NA	NA	31684944	31689572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316
transcript_101113.known	chr5	+	2053	2	FSM	ENSMUSG00000029141.17	ENSMUST00000201294.2	2053	2	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAGAAAATAT	NA	False	NA	NA	False	NA	NA	NA	31684338	31686749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31685029_31685386
transcript_101114.known	chr5	-	1042	8	FSM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	7.57816411992848	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTGTGGCTACTCATC	NA	False	NA	-31	True	AATAAA	-23	NA	31854971	31781782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
transcript_101118.known	chr5	+	478	4	FSM	ENSMUSG00000106918.4	ENSMUST00000031024.14	478	4	0	0	0	0	multi-exon	FALSE	canonical	3	1273	junction_1	440.713814926043	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771282	31779988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31771367_31771946_31771966_31773724_31773832_31779720
transcript_101121.known	chr5	+	638	4	FSM	ENSMUSG00000106918.4	ENSMUST00000201483.4	638	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	972.261624598372	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTATACTCTTGTCTCTTA	NA	False	NA	12	True	AATAAA	-15	NA	31771360	31779981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31771612_31771946_31771966_31773724_31773832_31779720
transcript_101126.known	chr5	+	2741	2	FSM	ENSMUSG00000106918.4	ENSMUST00000201620.2	2741	2	0	0	0	0	multi-exon	FALSE	canonical	3	2333	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTTGTCTCTTAGAGGT	NA	False	NA	17	True	AATAAA	-20	NA	31771356	31779986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31773832_31779720
transcript_101127.known	chr5	+	367	2	FSM	ENSMUSG00000106918.4	ENSMUST00000202953.2	367	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	9470	False	NA	19	True	AATAAA	-22	NA	31756076	31779988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31756176_31779720
transcript_101128.known	chr5	+	839	5	FSM	ENSMUSG00000106918.4	ENSMUST00000202243.4	839	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	45.0832563153994	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATATCTCTATTCTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	31771315	31812205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31771367_31773724_31773832_31786959_31787065_31807646_31807829_31811811
transcript_101132.known	chr5	+	1888	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5552	False	NA	35	True	AATAAA	-31	NA	31855027	32242306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
transcript_101146.known	chr5	+	715	6	FSM	ENSMUSG00000052139.19	ENSMUST00000201202.4	715	6	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_3	63.9606128801155	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTGATCGTTTAGCT	5882	False	NA	NA	False	AATAAA	-14	NA	31855357	31988560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428
transcript_101149.known	chr5	+	742	3	FSM	ENSMUSG00000052139.19	ENSMUST00000201487.4	742	3	0	0	0	0	multi-exon	FALSE	canonical	3	727	junction_2	56.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	5838	False	NA	NA	False	NA	NA	NA	31855313	31888792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_31855422_31859169_31859322_31888310
transcript_101151.known	chr5	+	6537	4	FSM	ENSMUSG00000029135.11	ENSMUST00000031017.11	6537	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCGTGATGGTTCCTTCCC	NA	False	NA	NA	False	AATAAA	-19	NA	32293144	32315186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_32294150_32304168_32304421_32307764_32307873_32310014
transcript_101153.known	chr5	+	5962	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTGGTCCTAATAATATAA	2695	False	NA	NA	False	AATAAA	-32	NA	32616186	32652867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
transcript_101160.known	chr5	+	4586	12	FSM	ENSMUSG00000014932.16	ENSMUST00000072311.13	4586	12	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	199.348401357942	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTATTCTTTTCTGTT	NA	False	NA	8	True	AATAAA	-18	NA	32768527	32844401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_32769182_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
transcript_101165.known	chr5	+	2657	12	FSM	ENSMUSG00000014932.16	ENSMUST00000202543.4	2657	12	0	0	0	0	multi-exon	FALSE	canonical	3	599	junction_1	80.0238600782178	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATAAAAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	32768514	32842921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_32768720_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
transcript_10117.known	chr10	+	1492	6	FSM	ENSMUSG00000060733.14	ENSMUST00000121446.2	1492	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	108.435049684131	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACTATGAAGAATAAAGA	2289	False	NA	NA	False	NA	NA	NA	71183665	71217830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_71183921_71199279_71199366_71201838_71201936_71208534_71208711_71212534_71212617_71217034
transcript_101177.known	chr5	+	2749	1	FSM	ENSMUSG00000014932.16	ENSMUST00000200779.2	2749	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32768541	32771290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_32768500_32771300
transcript_101182.known	chr5	-	2183	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTAGCTTTGTATTTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	32942990	32893644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
transcript_101189.nnic	chr5	-	2319	7	NNC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	-84	5260	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	49.3749824191249	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGCTCAGAAGGGCAA	6969	False	NA	NA	False	NA	NA	NA	33011684	32987701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33002023_33002136_33009225_33009343_33011436
transcript_101194.nic	chr5	-	3841	6	ISM	ENSMUSG00000054280.15	ENSMUST00000120129.9	9959	11	-20	38840	-20	6958	5prime_fragment	FALSE	canonical	3	28	junction_5	39.7109556671707	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAAAACATCAGACTGGA	7033	False	NA	NA	False	AATAAA	-8	NA	33011620	32986003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33009225_33009343_33011436
transcript_101199.nic	chr5	-	2207	6	ISM	ENSMUSG00000054280.15	ENSMUST00000120129.9	9959	11	-84	40538	-84	5260	5prime_fragment	FALSE	canonical	3	28	junction_5	39.7109556671707	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGCTCAGAAGGGCAA	6969	False	NA	NA	False	NA	NA	NA	33011684	32987701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33009225_33009343_33011436
transcript_101201.nnic	chr5	-	4160	5	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	-84	7330	combination_of_known_splicesites	FALSE	canonical	3	86	junction_4	14.456832294801	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTATGTCATTCATTAAAG	6969	False	NA	NA	False	AAGAAA	-1	NA	33011684	32985631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33011436
transcript_101205.nnic	chr5	-	3788	5	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	-84	6958	combination_of_known_splicesites	FALSE	canonical	3	86	junction_4	14.456832294801	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAAAACATCAGACTGGA	6969	False	NA	NA	False	AATAAA	-8	NA	33011684	32986003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33011436
transcript_101206.nnic	chr5	-	3135	5	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	-26	6363	combination_of_known_splicesites	FALSE	canonical	3	86	junction_4	14.456832294801	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACATGAAGAAAAAGTATG	7027	False	NA	NA	False	AATACA	-5	NA	33011626	32986598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33011436
transcript_101208.nnic	chr5	-	2090	5	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	-84	5260	combination_of_known_splicesites	FALSE	canonical	3	86	junction_4	14.456832294801	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGCTCAGAAGGGCAA	6969	False	NA	NA	False	NA	NA	NA	33011684	32987701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33011436
transcript_101217.known	chr5	-	2084	7	FSM	ENSMUSG00000023452.20	ENSMUST00000142957.6	2084	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	252.221904062452	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAAACT	NA	False	NA	NA	False	NA	NA	NA	32942983	32893665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32942892
transcript_101226.known	chr5	+	7929	43	FSM	ENSMUSG00000037426.19	ENSMUST00000119705.8	7929	43	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_1	24.5195673630974	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCACCTACTTTCTGAGC	2026	False	NA	NA	False	AATAAA	-21	NA	33021077	33151575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33021166_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
transcript_10125.known	chr10	+	1323	5	FSM	ENSMUSG00000060733.14	ENSMUST00000118381.8	1323	5	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_3	39.274673773311	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTAAAGCTGCT	2289	False	NA	NA	False	AATAAA	-14	NA	71183665	71213246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_71183921_71199279_71199366_71201838_71201936_71208537_71208711_71212534
transcript_101251.known	chr5	+	1764	2	FSM	ENSMUSG00000018965.12	ENSMUST00000019109.8	1764	2	0	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_1	0	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGCCTGGCCTTGATTT	NA	False	NA	9	True	AATAAA	-20	NA	33176159	33185310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33176499_33183885
transcript_101252.known	chr5	+	2181	1	FSM	ENSMUSG00000018965.12	ENSMUST00000199651.2	2181	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGTATTTTCTATCAGAA	NA	False	NA	NA	False	AATAAA	-13	NA	33176221	33178402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33176200_33178400
transcript_101253.known	chr5	+	4104	15	FSM	ENSMUSG00000011034.7	ENSMUST00000011178.5	4104	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	3.0572763655761	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCTTTGAAATTGCAGG	NA	False	NA	NA	False	AATAAA	-15	NA	33261562	33320214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33261936_33274126_33274199_33289293_33289399_33290729_33290790_33291946_33292052_33301306_33301413_33302593_33302675_33303850_33304072_33304286_33304423_33306240_33306349_33309902_33310054_33311889_33312059_33315431_33315648_33316420_33316530_33318122
transcript_101255.known	chr5	-	2045	6	FSM	ENSMUSG00000037379.8	ENSMUST00000046186.8	2045	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGGGTGACCTCCCACC	NA	False	NA	NA	False	AATAAA	-21	NA	33375799	33371270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33371997_33372892_33373068_33373676_33373869_33373940_33374165_33374587_33374808_33375291
transcript_101263.known	chr5	-	2436	10	FSM	ENSMUSG00000037373.13	ENSMUST00000202868.4	2436	10	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_1	199.225041809384	2022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATAAAAATCCCAGA	NA	False	NA	-45	True	NA	NA	NA	33432336	33405097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33406028_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33432122
transcript_101270.known	chr5	-	2279	9	FSM	ENSMUSG00000037373.13	ENSMUST00000079746.10	2279	9	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_8	242.929741643546	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGCACCAGTTTTAAT	NA	False	NA	-14	True	AATAAA	-21	NA	33432338	33405066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33432122
transcript_101280.known	chr5	-	2091	8	FSM	ENSMUSG00000037373.13	ENSMUST00000201575.4	2091	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	292.512270804882	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATAAAAATCCCAGA	NA	False	NA	-45	True	NA	NA	NA	33432336	33405097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33432122
transcript_101291.known	chr5	-	3595	7	FSM	ENSMUSG00000037373.13	ENSMUST00000202962.4	3595	7	0	0	0	0	multi-exon	FALSE	canonical	3	693	junction_5	78.2235045665091	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTCTTATTTTTAGAATA	NA	False	NA	NA	False	NA	NA	NA	33432325	33405368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33432122
transcript_101297.known	chr5	+	2193	9	FSM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_4	39.7106723690244	1148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGAGGTGTTTGTAA	NA	False	NA	20	True	AATAAA	-21	NA	33492852	33530640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
transcript_101303.known	chr5	+	7326	14	FSM	ENSMUSG00000037355.15	ENSMUST00000087864.12	7326	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	2.37342286469869	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGCTGTTGTTATTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	33536039	33577098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33536347_33536569_33536670_33544999_33545331_33546059_33546181_33546985_33547382_33549087_33549201_33549399_33549529_33559837_33559944_33566152_33566325_33566770_33566894_33568202_33568387_33568904_33569017_33571242_33571418_33572141
transcript_101309.known	chr5	+	3238	9	FSM	ENSMUSG00000037355.15	ENSMUST00000200682.2	3238	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	2.02715934252836	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	33535892	33567863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33536670_33544999_33545331_33546059_33546181_33546985_33547382_33549087_33549201_33549399_33549529_33559837_33559944_33566152_33566325_33566770
transcript_101315.known	chr5	-	2112	7	FSM	ENSMUSG00000037339.18	ENSMUST00000150033.8	2112	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	74.8793473974411	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	False	NA	-12	True	ATTAAA	-14	NA	33786932	33757699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33758225_33764807_33765572_33765674_33765834_33767775_33767831_33771946_33772179_33786196_33786322_33786680
transcript_101325.known	chr5	-	2009	6	FSM	ENSMUSG00000037339.18	ENSMUST00000065119.15	2009	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	26.6187903556867	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAGATTCTTTTTGTCAG	NA	False	NA	-3	True	ATTAAA	-23	NA	33786979	33757690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196_33786322_33786680
transcript_101327.nnic	chr5	-	1239	5	NIC	ENSMUSG00000037339.18	novel	2009	6	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	76.423164027669	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGCCTAGATTCTTTT	NA	False	NA	-9	True	ATTAAA	-17	NA	33786979	33757696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_33758225_33767775_33767831_33771946_33772179_33786196_33786322_33786680
transcript_101328.nic	chr5	-	1888	5	NIC	ENSMUSG00000037339.18	novel	2112	7	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	70.1248885917119	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	False	NA	-12	True	ATTAAA	-14	NA	33786992	33757699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786680
transcript_101337.known	chr5	-	2346	5	FSM	ENSMUSG00000037339.18	ENSMUST00000045329.10	2346	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	24.5089269450949	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTCTGCCTAGATTCT	NA	False	NA	-12	True	ATTAAA	-14	NA	33786966	33757699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196
transcript_101345.nnic	chr5	+	2422	15	NNC	ENSMUSG00000037313.17	novel	2669	15	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	337.174272144122	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815844	33829542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824386_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
transcript_101347.nnic	chr5	+	2823	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-49	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	256.734636286941	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815422	33829542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
transcript_101359.known	chr5	+	2669	15	FSM	ENSMUSG00000037313.17	ENSMUST00000074849.13	2669	15	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	250.331341649912	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	NA	False	NA	35	True	ACTAAA	-23	NA	33815471	33829545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824386_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
transcript_101362.known	chr5	+	2187	15	FSM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_7	83.9525193797308	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815929	33829542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
transcript_101376.nic	chr5	+	2890	14	ISM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	-507	0	-49	0	intron_retention	FALSE	canonical	3	792	junction_7	85.2006333837612	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815422	33829542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
transcript_10138.known	chr10	+	2676	8	FSM	ENSMUSG00000019923.15	ENSMUST00000105431.8	2676	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	390.63955932051	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTACGTGTTTAGTTG	NA	False	NA	NA	False	TATAAA	-32	NA	72490726	72505621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72503730
transcript_10140.known	chr10	+	1138	8	FSM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_7	327.562862014955	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGATGTTGTTGT	NA	False	NA	13	True	ATTAAA	-14	NA	72490727	72504997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
transcript_101403.known	chr5	-	1027	8	FSM	ENSMUSG00000004642.14	ENSMUST00000075670.13	1027	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	406.856741572836	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTCCTATACTACTGT	NA	False	NA	NA	False	NA	NA	NA	33809689	33792295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33792520_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
transcript_101405.known	chr5	-	1906	8	FSM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	44.1837535937436	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809918	33797398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
transcript_101408.nnic	chr5	-	1801	7	NIC	ENSMUSG00000004642.14	novel	1906	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_5	419.837270062263	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809918	33797398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33809306_33809424_33809538
transcript_101409.known	chr5	-	1578	7	FSM	ENSMUSG00000004642.14	ENSMUST00000101354.10	1578	7	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_4	432.7992863005	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809650	33797398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33807086_33807192_33809306_33809424_33809538
transcript_101417.known	chr5	-	2369	4	FSM	ENSMUSG00000019295.9	ENSMUST00000140931.2	2369	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	31.3793987620328	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTACTTCATTTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	33815243	33810562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814905
transcript_101418.known	chr5	-	2828	4	FSM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	8.99382504215469	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTTCATTTTGTTTAAC	NA	False	NA	1	True	AATAAA	-19	NA	33815760	33810559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814966
transcript_10142.known	chr10	+	1834	8	FSM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	0	0	0	0	multi-exon	FALSE	canonical	3	928	junction_7	94.1772102940808	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	10	True	AATAAA	-23	NA	72490676	72510796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
transcript_101421.known	chr5	+	888	2	FSM	ENSMUSG00000037313.17	ENSMUST00000139453.2	888	2	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCATCTTTTCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	33815977	33819359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33816072_33818565
transcript_101422.known	chr5	-	562	2	FSM	ENSMUSG00000004642.14	ENSMUST00000126581.2	562	2	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	33809645	33808968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33809424_33809538
transcript_101424.known	chr5	+	4218	18	FSM	ENSMUSG00000054252.19	ENSMUST00000067150.14	4218	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_16	3.88235294117647	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCGATTTCTGTTCTG	NA	False	NA	13	True	AATAAA	-20	NA	33879067	33894411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33879273_33879649_33879856_33884990_33885261_33885535_33885590_33887024_33887195_33887279_33887404_33887487_33887679_33889460_33889606_33890065_33890257_33890600_33890747_33891003_33891126_33891199_33891311_33891390_33891582_33891690_33891814_33891896_33891968_33892194_33892333_33892476_33892583_33892757
transcript_101429.known	chr5	-	5272	14	FSM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_8	46.4800014258216	667	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTACAGTGGTGTGTCC	NA	False	NA	NA	False	AATAAA	-20	NA	33940161	33897016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066_33918271_33918923_33919062_33919802_33919947_33926704_33927156_33935951_33936013_33939817
transcript_101445.known	chr5	+	7142	23	FSM	ENSMUSG00000057406.17	ENSMUST00000075812.11	7142	23	0	0	0	0	multi-exon	TRUE	canonical	3	189	junction_2	30.2485912519455	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCTTACACTTATTTAA	NA	False	NA	12	True	ATTAAA	-15	NA	33978068	34055310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_33978222_33979002_33979073_34000455_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024917_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249
transcript_101450.known	chr5	-	2580	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTCCACTTTAAATGCT	NA	False	NA	0	True	AATAAA	-29	NA	34093757	34055259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
transcript_101456.known	chr5	+	451	4	FSM	ENSMUSG00000070858.13	ENSMUST00000114382.2	451	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	16.5797734872612	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGTCCTGTATTTTG	NA	False	NA	5	True	AATAAA	-13	NA	34140877	34142353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34140988_34141100_34141241_34141395_34141485_34142241
transcript_101459.known	chr5	-	2073	5	FSM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_4	45.778679535347	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGTGTTTTTGTTTTT	9954	False	NA	0	True	NA	NA	NA	34326871	34311223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326733
transcript_101460.nic	chr5	-	1622	4	ISM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	32	9835	8	-805	5prime_fragment	FALSE	canonical	3	397	junction_3	52.8162432927178	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGTTTATAACCCATGA	9986	False	NA	NA	False	AAGAAA	-4	NA	34326839	34321058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_34321096_34323259_34323700_34324748_34325788_34326733
transcript_101463.known	chr5	-	3872	6	FSM	ENSMUSG00000037235.14	ENSMUST00000042701.13	3872	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.57681974534503	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGGTTTCTAGTTAT	NA	False	NA	NA	False	TATAAA	-20	NA	34345054	34331230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34334494_34334941_34335105_34336153_34336269_34341657_34341688_34344672_34344773_34344853
transcript_101465.known	chr5	-	3983	13	FSM	ENSMUSG00000037224.16	ENSMUST00000094868.10	3983	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	9.95685135416256	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGCTCTGGCGTCTTCTAT	NA	False	NA	-2	True	CATAAA	-18	NA	34445670	34352236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34353445_34353920_34354025_34354825_34354931_34356122_34356240_34356936_34357089_34373904_34375210_34382295_34382398_34389497_34389588_34390648_34390739_34391628_34391832_34393346_34393485_34400516_34400658_34445442
transcript_10147.nnic	chr10	-	2139	5	Fusion	ENSMUSG00000112168.2_ENSMUSG00000111994.2	novel	1140	3	NA	NA	-25059	303	multi-exon	FALSE	canonical	0	0	junction_3	4.63680924774785	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGGTTCTGAAAGTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	72810683	72775766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr10_-_72776843_72780098_72780242_72785400_72785926_72806094_72806255_72810448
transcript_101470.nic	chr5	-	3163	8	ISM	ENSMUSG00000037224.16	ENSMUST00000094868.10	3983	13	-120	20922	3	1788	5prime_fragment	FALSE	canonical	2	11	junction_2	7.32343178170074	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTGGTTTTATACATTG	NA	False	NA	NA	False	AAGAAA	-15	NA	34445790	34373158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_34375210_34382295_34382398_34389497_34389588_34390648_34390739_34391628_34391832_34393346_34393485_34400516_34400658_34445442
transcript_101471.nnic	chr5	-	1421	7	NNC	ENSMUSG00000037224.16	novel	712	4	NA	NA	-107	-1311	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	8.19891591749923	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTATTAGTAGTGTATA	NA	False	NA	NA	False	AATAAA	-24	NA	34445900	34385242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_34385544_34389497_34389588_34390648_34390739_34391628_34391832_34393346_34393485_34400516_34400658_34445442
transcript_101477.known	chr5	+	2895	8	FSM	ENSMUSG00000029110.14	ENSMUST00000030992.13	2895	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1003.41470052242	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493723	34510780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
transcript_101478.known	chr5	+	3046	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	927.964241042219	2023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCATTTATTCAGTTAT	NA	False	NA	28	True	AATAAA	-18	NA	34493632	34510783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
transcript_101482.known	chr5	+	2944	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182047.2	2944	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1054.04635300622	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGAACTAAGTATCTTT	NA	False	NA	13	True	AATAAA	-3	NA	34494275	34510768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34494442_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
transcript_101498.known	chr5	+	928	3	FSM	ENSMUSG00000029110.14	ENSMUST00000182772.8	928	3	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_1	95	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACTATTCACAGCTTACA	NA	False	NA	NA	False	NA	NA	NA	34493767	34504770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34493886_34499865_34500024_34504118
transcript_10150.known	chr10	+	3519	4	FSM	ENSMUSG00000040009.7	ENSMUST00000037813.5	3519	4	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_1	0.816496580927726	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTCCCTGTGTGCTGTG	NA	False	NA	NA	False	AATAAA	-21	NA	74803008	74852739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_74803215_74814622_74814689_74826765_74827973_74850699
transcript_101500.known	chr5	-	2022	7	FSM	ENSMUSG00000059866.14	ENSMUST00000030991.14	2022	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	56.3661147223125	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671307	34653430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34658801_34658865_34660880_34661172_34670962
transcript_101502.known	chr5	-	1987	6	FSM	ENSMUSG00000059866.14	ENSMUST00000087737.10	1987	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	11.160645142643	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671335	34653430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34660880_34661172_34670962
transcript_101504.nic	chr5	-	2231	5	NIC	ENSMUSG00000059866.14	novel	1987	6	NA	NA	-56	0	intron_retention	FALSE	canonical	3	117	junction_4	10.0623058987491	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671391	34653430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_34654295_34656523_34657081_34658251_34658342_34660880_34661172_34670962
transcript_101505.known	chr5	-	584	2	FSM	ENSMUSG00000059866.14	ENSMUST00000159102.2	584	2	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGGAAGAGCTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	34671004	34660629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34661172_34670962
transcript_101506.known	chr5	+	2885	13	FSM	ENSMUSG00000054520.16	ENSMUST00000067638.14	2885	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.59861050777091	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTCTTGACTGCATGT	NA	False	NA	NA	False	AATAAA	-34	NA	34683189	34720985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34683246_34708904_34709045_34710080_34710184_34712800_34712919_34713285_34713357_34714234_34714324_34714638_34714708_34716344_34716994_34717687_34717797_34718032_34718089_34718369_34718452_34718946_34719007_34719702
transcript_101507.known	chr5	+	2935	13	FSM	ENSMUSG00000054520.16	ENSMUST00000179943.3	2935	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.53432938662683	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTCTTGACTGCA	NA	False	NA	NA	False	AATAAA	-31	NA	34707031	34720982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34707141_34708904_34709045_34710080_34710184_34712800_34712919_34713285_34713357_34714234_34714324_34714638_34714708_34716344_34716994_34717687_34717797_34718032_34718089_34718369_34718452_34718946_34719007_34719702
transcript_101521.nic	chr5	+	3997	16	NIC	ENSMUSG00000029106.15	novel	4007	16	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_12	159.558752676108	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCAACTTTGCAT	NA	False	NA	26	True	AATAAA	-27	NA	34731067	34789652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34778175_34778263_34782622_34782780_34785758_34785858_34787813
transcript_101524.known	chr5	+	4007	16	FSM	ENSMUSG00000029106.15	ENSMUST00000114338.9	4007	16	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_14	162.471932618803	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCAACTTTGCAT	NA	False	NA	26	True	AATAAA	-27	NA	34731007	34789652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34786479_34786517_34787813
transcript_101528.known	chr5	+	3898	16	FSM	ENSMUSG00000029106.15	ENSMUST00000001108.11	3898	16	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	196.706549628289	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTTGGGGGCAACTTTG	NA	False	NA	23	True	AATAAA	-24	NA	34731206	34789649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774252_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34786479_34786517_34787813
transcript_10153.known	chr10	+	2620	11	FSM	ENSMUSG00000020175.16	ENSMUST00000234625.2	2620	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.3	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAATGAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	74872920	74889932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_74873154_74874271_74874353_74877671_74877764_74880302_74880369_74881863_74881966_74884280_74884346_74885727_74885784_74886473_74886552_74886821_74886913_74887749_74887876_74888302
transcript_101537.known	chr5	+	3761	15	FSM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_14	43.2925501438664	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCAACTTTGCAT	NA	False	NA	26	True	AATAAA	-27	NA	34731216	34789652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
transcript_10154.known	chr10	+	6839	23	FSM	ENSMUSG00000009681.11	ENSMUST00000164107.3	6839	23	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	6.08751601555753	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGGTTTGTGGTGGTTTC	NA	False	NA	15	True	ATTAAA	-15	NA	74896423	75020753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_74898143_74960855_74961029_74966852_74966958_74967330_74967517_74971725_74971834_74976821_74976883_74978913_74978967_74981153_74981295_74989717_74989840_74990729_74990899_74992909_74993030_74993841_74993918_74995617_74995723_74996161_74996237_75001876_75001975_75003938_75004071_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
transcript_101555.known	chr5	+	412	2	FSM	ENSMUSG00000029106.15	ENSMUST00000145986.2	412	2	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATCACTCAGCACATCAG	NA	False	NA	NA	False	NA	NA	NA	34731147	34758969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34731258_34758667
transcript_101564.known	chr5	-	1906	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_12	91.0092715057098	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	False	NA	-7	True	AATAAA	-17	NA	34794536	34790992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
transcript_101565.known	chr5	-	1754	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114331.10	1754	13	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_12	99.4937183946806	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	-4	True	AATAAA	-20	NA	34794556	34790989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794442
transcript_10157.known	chr10	+	1460	8	FSM	ENSMUSG00000009681.11	ENSMUST00000218465.2	1460	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15.7635591132957	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGGGGGCCACAGCCAT	NA	False	NA	9	True	AATAAA	-18	NA	75009796	75018614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75010000_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
transcript_101577.nic	chr5	-	2071	12	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	5	0	intron_retention	FALSE	canonical	3	174	junction_11	68.0427672998254	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	-5	True	AATAAA	-19	NA	34794551	34790990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
transcript_10163.known	chr10	+	4725	16	FSM	ENSMUSG00000033444.15	ENSMUST00000218766.2	4725	16	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	14.4858551697855	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTCAGTAACAAGATGGAT	NA	False	NA	NA	False	AATAAA	-13	NA	75047904	75146897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75048052_75066515_75066706_75076898_75077053_75080912_75082547_75084270_75084479_75093701_75093776_75094801_75094978_75097627_75097792_75099112_75099205_75103332_75103424_75109850_75109935_75112604_75112762_75115692_75115796_75143070_75143188_75143867_75143928_75145623
transcript_101639.known	chr5	-	2702	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	-5	True	AATAAA	-16	NA	34817492	34795879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
transcript_101643.nic	chr5	-	2469	17	ISM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	-5	477	-5	-477	5prime_fragment	FALSE	canonical	3	557	junction_9	62.8681345655333	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAACAGGAAAGGAAAAG	NA	False	NA	-7	True	AGTAAA	-1	NA	34817497	34796356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
transcript_101646.nic	chr5	-	1143	8	ISM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	31	12010	31	-6497	5prime_fragment	FALSE	canonical	3	566	junction_3	32.9408870678421	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGGAGAAGATGACAGTGA	NA	False	NA	3	True	NA	NA	NA	34817461	34807889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
transcript_101647.nic	chr5	-	1006	7	ISM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	-9	13316	-9	-7803	5prime_fragment	FALSE	canonical	3	566	junction_2	34.2851603791235	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATGAACATGAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	34817501	34809195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
transcript_101648.nic	chr5	-	928	6	ISM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	8	13791	8	-8278	5prime_fragment	FALSE	canonical	3	566	junction_1	36.5272501018076	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGGAGCAAGAGAGGCTCA	NA	False	NA	NA	False	AAAACA	-18	NA	34817484	34809670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
transcript_101649.nic	chr5	-	932	5	ISM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	-94	15353	-94	-9840	5prime_fragment	FALSE	canonical	3	594	junction_3	29.456535777311	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGGTGGGCAGCACCCT	NA	False	NA	NA	False	AAAAAG	-7	NA	34817586	34811232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
transcript_101654.known	chr5	+	4382	18	FSM	ENSMUSG00000029104.16	ENSMUST00000148953.8	4382	18	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	5.56745361834183	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATCAGTTATA	1552	False	NA	NA	False	NA	NA	NA	34919083	34979422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_34919454_34940085_34940170_34947610_34947732_34951448_34951509_34953235_34953316_34956720_34956860_34961061_34961204_34961845_34962025_34963916_34964122_34965212_34965261_34968778_34968860_34970195_34970537_34974486_34974614_34975041_34975161_34975942_34976055_34976240_34976379_34977294_34977454_34977545
transcript_101656.nic	chr5	+	625	4	ISM	ENSMUSG00000029104.16	ENSMUST00000148953.8	4382	18	9	27915	5	-4238	5prime_fragment	FALSE	canonical	3	38	junction_2	7.76029781788188	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGGTGTTTGCTCTGCAT	1561	False	NA	NA	False	ATTAAA	-3	NA	34919092	34951507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_34919454_34940085_34940170_34947610_34947732_34951448
transcript_101658.known	chr5	+	5472	17	FSM	ENSMUSG00000029101.17	ENSMUST00000030984.14	5472	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_15	4.70206071845101	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTGTGTCTTGCCT	8631	False	NA	NA	False	TTTAAA	-16	NA	35106788	35190939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_35106869_35122116_35124100_35132560_35132678_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35187811_35187966_35189214
transcript_101659.nic	chr5	+	3712	16	ISM	ENSMUSG00000029101.17	ENSMUST00000030984.14	5472	17	-58	3067	-58	438	5prime_fragment	TRUE	canonical	2	8	junction_15	4.54899256246186	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTAGGGATCCCCGCCTT	8573	False	NA	NA	False	ATTAAA	-23	NA	35106730	35187872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_35106869_35122116_35124100_35132560_35132678_35156551_35156574_35176686_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35187811
transcript_101665.known	chr5	+	2779	7	FSM	ENSMUSG00000044716.13	ENSMUST00000114270.8	2779	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.10554159678513	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGCCTTGTTCCATTT	NA	False	NA	NA	False	NA	NA	NA	35214205	35238308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_35214333_35214435_35214482_35221677_35221909_35223793_35223995_35232646_35232767_35234491_35234612_35236374
transcript_101669.known	chr5	-	2981	8	FSM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	0	0	0	0	multi-exon	FALSE	canonical	3	809	junction_2	73.9092107153867	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGGAAAATGACCTGTG	NA	False	NA	-7	True	AATAAA	-21	NA	35263110	35248844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
transcript_101675.known	chr5	-	1573	7	FSM	ENSMUSG00000029103.17	ENSMUST00000147028.3	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	809	junction_2	75.6233356107021	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACACTTGAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	35263033	35250638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255618_35256500_35256623_35259738_35259884_35262822
transcript_101690.known	chr5	+	3445	1	FSM	ENSMUSG00000045318.7	ENSMUST00000049545.7	3445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGGTGCATTGGTCAG	NA	False	NA	NA	False	AATAAA	-15	NA	35435662	35439107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_35435700_35439100
transcript_101691.known	chr5	-	2245	11	FSM	ENSMUSG00000036596.7	ENSMUST00000038676.7	2245	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.00498756211209	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATGAAAGGCTCTGTGC	NA	False	NA	NA	False	ATTAAA	-15	NA	35683042	35659561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_35660026_35660995_35661096_35664015_35664156_35665461_35665598_35668366_35668526_35669046_35669209_35669754_35669952_35672694_35672908_35674736_35675112_35676424_35676458_35682776
transcript_101692.known	chr5	-	2705	1	FSM	ENSMUSG00000106928.2	ENSMUST00000201742.2	2705	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCCTGTGGTTTCATC	NA	False	NA	NA	False	NA	NA	NA	35711308	35708603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_35708600_35711300
transcript_101695.known	chr5	-	3790	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.3	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAATAGAAATATTTAT	7626	False	NA	NA	False	TATAAA	-21	NA	35732414	35713546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
transcript_101696.known	chr5	-	2192	2	FSM	ENSMUSG00000029097.12	ENSMUST00000145930.2	2192	2	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAATCAATAAA	7645	False	NA	NA	False	AGTAAA	-44	NA	35732395	35729839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_35731539_35731902
transcript_101699.known	chr5	+	2956	19	FSM	ENSMUSG00000029098.18	ENSMUST00000114237.8	2956	19	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	14.5314686197546	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGGCACCAGAAGTTT	NA	False	NA	NA	False	NA	NA	NA	35740394	35769951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_35740664_35741219_35741320_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
transcript_10170.nic	chr10	+	2591	7	ISM	ENSMUSG00000033444.15	ENSMUST00000218766.2	4725	16	-50	51962	-50	-11257	5prime_fragment	FALSE	canonical	3	164	junction_1	12.5222025041746	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGAAACTCACAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	75047854	75094935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_75048052_75066515_75066706_75076898_75077053_75080912_75082547_75084270_75084479_75093701_75093776_75094801
transcript_101703.known	chr5	+	3976	19	FSM	ENSMUSG00000029098.18	ENSMUST00000068947.14	3976	19	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_8	8.72982683351794	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTTTCTCCCCTGTG	NA	False	NA	24	True	AATAAA	-15	NA	35740383	35771145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_35740479_35741219_35741320_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
transcript_10171.nic	chr10	+	2411	6	ISM	ENSMUSG00000033444.15	ENSMUST00000218766.2	4725	16	-50	53168	-50	-12463	5prime_fragment	FALSE	canonical	3	164	junction_1	13.676256797823	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCATGACATGGAAAGAGAAA	NA	False	NA	NA	False	AAGAAA	-15	NA	75047854	75093729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_75048052_75066515_75066706_75076898_75077053_75080912_75082547_75084270_75084479_75093701
transcript_101712.known	chr5	-	4246	18	FSM	ENSMUSG00000036553.17	ENSMUST00000201511.2	4246	18	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_17	16.3400287573917	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGGTATCTTCTAGGT	NA	False	NA	-8	True	AGTAAA	-12	NA	35897331	35854526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881489_35897301
transcript_101715.nnic	chr5	-	4235	17	NIC	ENSMUSG00000036553.17	novel	4246	18	NA	NA	-62	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_15	23.5478236786332	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTATCTTCTAGGTGT	NA	False	NA	-6	True	AGTAAA	-14	NA	35897393	35854524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35881257_35881489_35897301
transcript_101728.nic	chr5	+	2789	20	NIC	ENSMUSG00000029095.18	novel	1995	22	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	30.5887745781668	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	1509	False	NA	39	True	ATTAAA	-41	NA	35915219	36041493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030569_36031976_36031985_36032176_36032258_36040649
transcript_101729.known	chr5	+	3564	20	FSM	ENSMUSG00000029095.18	ENSMUST00000054598.12	3564	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	33.4716980542834	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGCGAAAGGACAAAATGT	1513	False	NA	NA	False	AATAAA	-17	NA	35915223	36042317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36006859_36006914_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030569_36031976_36031985_36032176_36032258_36040649
transcript_10173.nic	chr10	+	1806	4	ISM	ENSMUSG00000033444.15	ENSMUST00000218766.2	4725	16	-50	64720	-50	1212	5prime_fragment	FALSE	canonical	3	164	junction_1	13.8804418757713	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAACAAGATAACAAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	75047854	75082177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_75048052_75066515_75066706_75076898_75077053_75080912
transcript_101734.known	chr5	+	2953	19	FSM	ENSMUSG00000029095.18	ENSMUST00000114204.8	2953	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	33.9354870887485	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGTCTCACATCAACCT	1599	False	NA	NA	False	AATAAA	-16	NA	35915309	36041810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36006859_36006914_36014471_36014525_36015169_36015309_36031976_36031985_36032176_36032258_36040649
transcript_101737.nic	chr5	+	2691	19	NIC	ENSMUSG00000029095.18	novel	3564	20	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	30.3361822024012	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	1508	False	NA	39	True	ATTAAA	-41	NA	35915218	36041493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030569_36031976_36031985_36032176_36032258_36040649
transcript_10174.known	chr10	+	3167	3	FSM	ENSMUSG00000033444.15	ENSMUST00000218876.2	3167	3	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	17	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAATAGAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-39	NA	75047926	75079750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75048052_75066515_75066706_75076898
transcript_101747.nic	chr5	+	2672	18	NIC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	30.4014659999826	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	1509	False	NA	39	True	ATTAAA	-41	NA	35915219	36041493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169_36015309_36031976_36031985_36032176_36032258_36040649
transcript_101749.known	chr5	+	2579	18	FSM	ENSMUSG00000029095.18	ENSMUST00000114205.8	2579	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	34.0068179608159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	1557	False	NA	39	True	ATTAAA	-41	NA	35915267	36041493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36006859_36006914_36014471_36014525_36015169_36015309_36031976_36031985_36032176_36032258_36040649
transcript_101753.nic	chr5	+	2640	18	NIC	ENSMUSG00000029095.18	novel	3564	20	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	32.0752791010735	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	1457	False	NA	39	True	ATTAAA	-41	NA	35915167	36041493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030569_36031976_36031985_36032176_36032258_36040649
transcript_101760.nic	chr5	+	2574	17	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	29.8123689724584	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	1508	False	NA	39	True	ATTAAA	-41	NA	35915218	36041493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169_36015309_36031976_36031985_36032176_36032258_36040649
transcript_10177.known	chr10	-	3500	6	FSM	ENSMUSG00000033416.16	ENSMUST00000039796.14	3500	6	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	9.3893556754444	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	75353215	75342116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75344804_75345425_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75352987
transcript_101771.nic	chr5	+	2523	16	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	31.8751732021438	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGTTTTACGGTCCCTG	1457	False	NA	39	True	ATTAAA	-41	NA	35915167	36041493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36014471_36014525_36015169_36015309_36031976_36031985_36032176_36032258_36040649
transcript_101778.nic	chr5	+	2013	15	NIC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_12	19.8329760443437	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1457	False	NA	5	True	AAAACA	-8	NA	35915167	36015530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169
transcript_101783.nic	chr5	+	1862	14	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_11	15.4395174220198	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1509	False	NA	5	True	AAAACA	-8	NA	35915219	36015530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169
transcript_10179.known	chr10	-	2843	6	FSM	ENSMUSG00000033416.16	ENSMUST00000118936.8	2843	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	31.7616120497685	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGTGGTAGCACCCTTT	NA	False	NA	-13	True	AATAAA	-11	NA	75353806	75342658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75344804_75345425_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75353693
transcript_101797.known	chr5	+	6618	17	FSM	ENSMUSG00000029094.13	ENSMUST00000064571.11	6618	17	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	3.8155725323993	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTGAGTCGTCACTTC	2005	False	NA	15	True	NA	NA	NA	36050662	36161267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_36050885_36092895_36093025_36093381_36093477_36102531_36102641_36105378_36105591_36108198_36108379_36119089_36119192_36119548_36119631_36125913_36126064_36131731_36131944_36133835_36133982_36141532_36141651_36146897_36147013_36150884_36151050_36153300_36153492_36154861_36155027_36157042
transcript_1018.nnic	chr1	-	1928	11	NNC	ENSMUSG00000046337.18	novel	1659	10	NA	NA	-146	0	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_8	39.9335698379196	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722410	36639056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
transcript_101804.known	chr5	+	3528	4	FSM	ENSMUSG00000029198.4	ENSMUST00000031099.4	3528	4	0	0	0	0	multi-exon	FALSE	canonical	3	2567	junction_1	75.3126815350509	1049	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGCTTAAGCACAGCTT	NA	False	NA	NA	False	AATAAA	-33	NA	36622341	36631424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_36622600_36626781_36626945_36627945_36628028_36628399
transcript_101806.known	chr5	-	4590	14	FSM	ENSMUSG00000029192.18	ENSMUST00000031094.15	4590	14	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_13	25.6258929704419	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACTGTGTACTTTGGT	8925	False	NA	0	True	AATAAA	-22	NA	36739741	36647947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639_36729382_36739698
transcript_101807.known	chr5	-	3884	12	FSM	ENSMUSG00000029192.18	ENSMUST00000171385.8	3884	12	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	14.7609043598508	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCACTGTGTACTTTGG	8784	False	NA	-1	True	AATAAA	-21	NA	36687967	36647948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36687766
transcript_101809.known	chr5	-	2783	3	FSM	ENSMUSG00000029192.18	ENSMUST00000156658.2	2783	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	8932	False	NA	NA	False	NA	NA	NA	36739734	36698636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_36700642_36728639_36729382_36739698
transcript_101812.known	chr5	-	6677	9	FSM	ENSMUSG00000029190.20	ENSMUST00000031091.13	6677	9	0	0	0	0	multi-exon	FALSE	canonical	2	71	junction_5	5.18260311040697	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTTGTTTTTATTTAT	NA	False	NA	45	True	AATAAA	-13	NA	36853281	36757828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_36760148_36761854_36761953_36765281_36765391_36770589_36773879_36776086_36776169_36777007_36777075_36787000_36787136_36830091_36830587_36853198
transcript_101817.known	chr5	-	2014	2	FSM	ENSMUSG00000029190.20	ENSMUST00000140653.2	2014	2	0	0	0	0	multi-exon	FALSE	canonical	2	76	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTGTATTATGTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	36853368	36828742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_36830587_36853198
transcript_101818.known	chr5	-	1273	1	FSM	ENSMUSG00000060708.5	ENSMUST00000071949.5	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTCCTTCTGGAGAT	NA	False	NA	-4	True	ATTAAA	-19	NA	36905994	36904721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_36904700_36906000
transcript_101819.known	chr5	-	1648	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1678	junction_1	0	1592	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCCTGTGTTTAGTTTA	NA	False	NA	41	True	AAGAAA	-22	NA	36954116	36952210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_36953289_36953546
transcript_10182.known	chr10	+	442	4	FSM	ENSMUSG00000020180.11	ENSMUST00000220229.2	442	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	1763.59254553501	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTGATAAACTGTTAAG	1894	False	NA	-15	True	NA	NA	NA	75353876	75371252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75353960_75355147_75355295_75368010_75368065_75371094
transcript_101822.known	chr5	-	3330	19	FSM	ENSMUSG00000029119.10	ENSMUST00000031002.10	3330	19	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_7	26.3739138796905	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	949	False	NA	-13	True	AATAAA	-21	NA	36987997	36964264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
transcript_10183.known	chr10	+	3036	4	FSM	ENSMUSG00000020180.11	ENSMUST00000020397.11	3036	4	0	0	0	0	multi-exon	FALSE	canonical	3	3512	junction_3	116.998575489904	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGATTATTCCAAGACT	1402	False	NA	NA	False	AATAAA	-17	NA	75353384	75373215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094
transcript_101858.known	chr5	+	4088	9	FSM	ENSMUSG00000029120.11	ENSMUST00000031003.11	4088	9	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_3	14.0890028036054	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGGCTCGCAAGGCTGC	NA	False	NA	9	True	AATAAA	-21	NA	37025856	37112422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_37026235_37080311_37080410_37083628_37083795_37084874_37084988_37088579_37088758_37097440_37097606_37104411_37104582_37106896_37106989_37109694
transcript_10186.known	chr10	+	665	2	FSM	ENSMUSG00000020180.11	ENSMUST00000191097.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	3739	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTACTTGTCTATAAAACAA	1865	False	NA	NA	False	AATACA	-8	NA	75353847	75355700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75353960_75355147
transcript_101874.nnic	chr5	-	3696	9	NNC	ENSMUSG00000039474.14	novel	3787	8	NA	NA	-53	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	53.8468604005842	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCTTGCCTTCTGGTTTG	NA	False	NA	-1	True	AATAAA	-16	NA	37146330	37123449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_37126023_37126736_37126867_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
transcript_101876.known	chr5	-	3787	8	FSM	ENSMUSG00000039474.14	ENSMUST00000043964.13	3787	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	10.259888211986	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGCCTTCTGGTTTGAT	NA	False	NA	1	True	AATAAA	-18	NA	37146549	37123447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_37126023_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
transcript_101878.known	chr5	-	3284	8	FSM	ENSMUSG00000039474.14	ENSMUST00000166339.8	3284	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	46.2071643883968	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCCTTGCCTTCTGGTTT	NA	False	NA	-2	True	AATAAA	-15	NA	37146277	37123450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_37125795_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
transcript_101885.nic	chr5	+	2564	13	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_1	26.6327909832138	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37185643	37282643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_37185944_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_101892.known	chr5	+	2383	13	FSM	ENSMUSG00000063646.19	ENSMUST00000043794.11	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	48.883080463035	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37208200	37282643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_37208320_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_101896.nnic	chr5	+	2105	12	Fusion	ENSMUSG00000113373.2_ENSMUSG00000063646.19	novel	516	2	NA	NA	2833	0	multi-exon	FALSE	canonical	3	13	junction_1	47.5912346954217	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	3214	False	NA	17	True	AATAAA	-20	NA	37245546	37282643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr5_+_37245651_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_101901.nic	chr5	+	2074	11	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5684	22702	-26	0	internal_fragment	FALSE	canonical	3	147	junction_1	11.74265728019	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	2454	False	NA	17	True	AATAAA	-20	NA	37248397	37282643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_101909.nic	chr5	+	1451	6	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_1	26.8179044669788	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAGAACGAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	37185643	37262219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_37185944_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156
transcript_101910.known	chr5	+	1224	6	FSM	ENSMUSG00000063646.19	ENSMUST00000137019.8	1224	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	60.2348736198558	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAGAACGAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	37204816	37262219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_37204890_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156
transcript_101913.known	chr5	+	849	3	FSM	ENSMUSG00000063646.19	ENSMUST00000173836.8	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	10.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGCAGGAGATCCTGGA	NA	False	NA	NA	False	NA	NA	NA	37185678	37248791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_37185944_37242579_37242843_37248470
transcript_101916.known	chr5	+	950	1	FSM	ENSMUSG00000063646.19	ENSMUST00000201223.2	950	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAATAAATAAAA	2480	False	NA	NA	False	NA	NA	NA	37248423	37249373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_37248400_37249400
transcript_101922.known	chr5	-	4325	21	FSM	ENSMUSG00000029122.12	ENSMUST00000031005.11	4325	21	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	2.64764045897474	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTCTTGCCTGTTTCGG	NA	False	NA	NA	False	AATAAA	-17	NA	37494238	37456514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_37457845_37458155_37458268_37458901_37458996_37460528_37460656_37464556_37464669_37466375_37466521_37467504_37467712_37468875_37469087_37470772_37470883_37471702_37471916_37473668_37473768_37475506_37475656_37476232_37476450_37477579_37477739_37479393_37479532_37481042_37481142_37482180_37482266_37483681_37483930_37485805_37485890_37490235_37490362_37493978
transcript_101923.nic	chr5	-	4329	21	NIC	ENSMUSG00000029122.12	novel	4325	21	NA	NA	-46	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.16977917211909	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGTTGTTCTTGCCTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	37494284	37456517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_37457806_37458155_37458268_37458901_37458996_37460528_37460656_37464556_37464669_37466375_37466521_37467504_37467712_37468875_37469087_37470772_37470883_37471702_37471916_37473668_37473768_37475506_37475656_37476232_37476450_37477579_37477739_37479393_37479532_37481042_37481142_37482180_37482266_37483681_37483930_37485805_37485890_37490235_37490362_37493978
transcript_101926.known	chr5	+	2906	14	FSM	ENSMUSG00000029121.17	ENSMUST00000031004.11	2906	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.40069023605034	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAAAGAAATTAA	NA	False	NA	NA	False	NA	NA	NA	37403107	37449445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_37403441_37422575_37422665_37426026_37426212_37430690_37430856_37433620_37433683_37435428_37435510_37436206_37436276_37437002_37437124_37437810_37437968_37440195_37440338_37441371_37441543_37443711_37443892_37446148_37446315_37448460
transcript_101927.known	chr5	+	3051	14	FSM	ENSMUSG00000029121.17	ENSMUST00000114158.9	3051	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.5903781908435	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGGGTGTTTTCACT	7407	False	NA	NA	False	AATAAA	-21	NA	37399423	37449477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_37399870_37422575_37422665_37426026_37426212_37430690_37430856_37433620_37433683_37435428_37435510_37436206_37436276_37437002_37437124_37437810_37437968_37440195_37440338_37441371_37441543_37443711_37443892_37446148_37446315_37448460
transcript_101929.known	chr5	+	4091	20	FSM	ENSMUSG00000050248.12	ENSMUST00000056365.9	4091	20	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_14	7.49034466215639	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATAAGAGTGGACCTCAT	8842	False	NA	3	True	CATAAA	-19	NA	37495842	37582399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37535526_37535767_37537753_37537930_37540421_37540582_37544028_37544484_37549336_37549542_37550423_37550541_37567577_37567806_37573070_37573292_37574748_37574837_37576467_37576671_37579181_37579284_37581752
transcript_101932.known	chr5	+	2796	12	FSM	ENSMUSG00000050248.12	ENSMUST00000101258.5	2796	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_8	6.81029847284656	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGAGCCTGCAATCCT	8951	False	NA	NA	False	NA	NA	NA	37495951	37545108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37535526_37535767_37537753_37537930_37540421_37540582_37544028
transcript_101934.known	chr5	-	1935	2	FSM	ENSMUSG00000048450.11	ENSMUST00000063116.10	1935	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGGGTTTAGTTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	37981927	37977828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_37979045_37981208
transcript_101936.known	chr5	-	1880	1	FSM	ENSMUSG00000048450.11	ENSMUST00000183013.2	1880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGCATA	NA	False	NA	NA	False	NA	NA	NA	37981926	37980046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_37980000_37981900
transcript_101938.known	chr5	+	3002	11	FSM	ENSMUSG00000029125.15	ENSMUST00000114126.9	3002	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	9.96794863550169	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGATTGTGGACTTAGA	NA	False	NA	NA	False	CATAAA	-13	NA	38196085	38295109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
transcript_10194.nic	chr10	+	2687	15	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-475	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	94.4297600962574	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75399506	75422025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_101940.known	chr5	+	1471	11	FSM	ENSMUSG00000029125.15	ENSMUST00000031008.13	1471	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_10	31.04834939252	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTATTGCAGTCAGTGAG	NA	False	NA	13	True	AATAAA	-13	NA	38196576	38294161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293698
transcript_101942.known	chr5	+	1473	10	FSM	ENSMUSG00000029125.15	ENSMUST00000042146.15	1473	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	33.2335543660691	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGTCAGTGAGTCTCCA	NA	False	NA	19	True	AATAAA	-19	NA	38196594	38294167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
transcript_101943.known	chr5	+	900	10	FSM	ENSMUSG00000029125.15	ENSMUST00000154929.5	900	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	32.4550971857016	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGCAGGTTTCCGAGTG	NA	False	NA	NA	False	NA	NA	NA	38196626	38293616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38196844_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
transcript_101945.known	chr5	-	2581	5	FSM	ENSMUSG00000029126.8	ENSMUST00000031009.8	2581	5	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_1	2.8613807855649	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGACTGTCTGTACTCA	NA	False	NA	1	True	AATAAA	-25	NA	38317251	38294535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38296217_38302052_38302164_38312951_38313069_38316220_38316376_38316734
transcript_101950.known	chr5	-	2978	8	FSM	ENSMUSG00000029127.16	ENSMUST00000094833.10	2978	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	10.0772526220277	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGCTCAGTTTCTAAGC	NA	False	NA	NA	False	NA	NA	NA	38377801	38357423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38370651_38371728_38373790_38373958_38377666
transcript_101952.known	chr5	-	2721	7	FSM	ENSMUSG00000029127.16	ENSMUST00000126267.8	2721	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	14.1391890385081	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATATTTTGTAAATT	NA	False	NA	NA	False	AATAAA	-22	NA	38377757	38357589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38370651_38371728_38373790_38373958_38377666
transcript_101953.known	chr5	-	1654	6	FSM	ENSMUSG00000029127.16	ENSMUST00000143436.8	1654	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	15.2918278828922	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTTTTATATTTTGTAA	NA	False	NA	NA	False	AATAAA	-19	NA	38377769	38357592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38373790_38373958_38377666
transcript_101958.known	chr5	-	1337	2	FSM	ENSMUSG00000029127.16	ENSMUST00000137577.3	1337	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTATGCACTCGACCCACA	NA	False	NA	NA	False	NA	NA	NA	38377768	38372722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38373958_38377666
transcript_101961.nic	chr5	+	1653	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	190	junction_2	843.03156656333	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGTATCTATGATAA	NA	False	NA	13	True	AATAAA	-14	NA	38377807	38391640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_38377980_38380477_38380572_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
transcript_101962.nic	chr5	+	1657	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	182	junction_2	844.746612604142	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGTATCTATGATAA	NA	False	NA	13	True	AATAAA	-14	NA	38377807	38391640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
transcript_101965.known	chr5	+	1563	9	FSM	ENSMUSG00000067367.10	ENSMUST00000087514.9	1563	9	0	0	0	0	multi-exon	FALSE	canonical	3	2026	junction_5	151.553981719386	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATGATAACAAATTCTTG	NA	False	NA	23	True	AATAAA	-24	NA	38377813	38391650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
transcript_101975.nic	chr5	+	867	7	NIC	ENSMUSG00000067367.10	novel	873	7	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	190	junction_2	911.10220185346	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAGGAAGGAGGA	NA	False	NA	18	True	AAAACA	-40	NA	38377807	38388027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_38377980_38380477_38380572_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
transcript_101977.known	chr5	+	873	7	FSM	ENSMUSG00000067367.10	ENSMUST00000130721.8	873	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	913.07374656523	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACGGCAGAAAAACAGGAAGA	NA	False	NA	38	True	NA	NA	NA	38377825	38388047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
transcript_101983.known	chr5	+	554	6	FSM	ENSMUSG00000067367.10	ENSMUST00000202506.2	554	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	852.944171678311	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTAAAGTTCCATCTGCAA	NA	False	NA	-46	True	NA	NA	NA	38377871	38387963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38377980_38382061_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
transcript_101984.known	chr5	+	885	6	FSM	ENSMUSG00000067367.10	ENSMUST00000132190.8	885	6	0	0	0	0	multi-exon	FALSE	canonical	2	91	junction_1	840.645133216151	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGGCAGAAAAACAGGAAGAA	NA	False	NA	39	True	NA	NA	NA	38377870	38388048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38378134_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
transcript_101985.known	chr5	+	557	5	FSM	ENSMUSG00000067367.10	ENSMUST00000123207.8	557	5	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	965.191302281574	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGTGCTTTTGATAAT	NA	False	NA	NA	False	AATAAA	-42	NA	38377863	38385259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38377980_38380477_38380572_38381970_38382142_38383232_38383348_38385198
transcript_101987.known	chr5	+	898	5	FSM	ENSMUSG00000067367.10	ENSMUST00000154975.8	898	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	914.515821350292	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTGTGCCAGCCTGCGT	NA	False	NA	NA	False	NA	NA	NA	38377872	38388332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38377980_38381970_38382142_38385198_38385307_38385393_38385478_38387904
transcript_101988.known	chr5	+	504	5	FSM	ENSMUSG00000067367.10	ENSMUST00000152066.8	504	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	951.951777927853	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGCATCAGTGAAGGTCA	NA	False	NA	NA	False	NA	NA	NA	38377893	38383257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38377980_38380274_38380399_38380477_38380576_38381970_38382142_38383232
transcript_101994.known	chr5	+	726	5	FSM	ENSMUSG00000067365.12	ENSMUST00000119047.8	726	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	95.0167748347627	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTTTTTATACTATTTA	NA	False	NA	11	True	NA	NA	NA	38417727	38425251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38425041
transcript_101995.known	chr5	+	1291	5	FSM	ENSMUSG00000067365.12	ENSMUST00000087511.10	1291	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_4	19.5751756058534	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTAATGCAAATTTGG	NA	False	NA	NA	False	AATAAA	-25	NA	38417528	38426978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38426402
transcript_101999.known	chr5	+	1939	1	FSM	ENSMUSG00000067365.12	ENSMUST00000201661.3	1939	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAAAAAAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	38417714	38419653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38417700_38419700
transcript_102000.known	chr5	+	3141	6	FSM	ENSMUSG00000051596.16	ENSMUST00000114099.6	3141	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	1.93907194296653	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGAATTGCCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	38434747	38461551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38435169_38445240_38445378_38451832_38451892_38455200_38455332_38456966_38457875_38460066
transcript_102002.known	chr5	+	3152	1	FSM	ENSMUSG00000039358.4	ENSMUST00000041646.4	3152	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAATCATTTCTAGAAC	NA	False	NA	NA	False	NA	NA	NA	38476709	38479861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_38476700_38479900
transcript_102003.known	chr5	-	3602	12	FSM	ENSMUSG00000005107.14	ENSMUST00000067886.12	3602	12	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_11	4.00619355209649	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATCGTTTCACTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	38637649	38506615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38508681_38520185_38520314_38537260_38537337_38539385_38539488_38549056_38549168_38556044_38556233_38574517_38574651_38593882_38594029_38597992_38598118_38610444_38610606_38634737_38634837_38637381
transcript_102013.known	chr5	-	2139	15	FSM	ENSMUSG00000005103.13	ENSMUST00000201260.4	2139	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	308.085372808862	1174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGCATGTGGAGCGTAC	NA	False	NA	-7	True	AATAAA	-11	NA	38718978	38684929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692684_38694481_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718540_38718858
transcript_102036.known	chr5	-	3909	1	FSM	ENSMUSG00000005103.13	ENSMUST00000202199.2	3909	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	38718886	38714977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38715000_38718900
transcript_102037.known	chr5	-	6804	4	FSM	ENSMUSG00000046572.11	ENSMUST00000057258.11	6804	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	106.871677986057	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGCTCTCTCATTTCG	NA	False	NA	-5	True	AATAAA	-16	NA	38842093	38825828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38832197_38839827_38840126_38840535_38840602_38842021
transcript_102041.known	chr5	-	1124	3	FSM	ENSMUSG00000046572.11	ENSMUST00000180214.8	1124	3	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	31	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAGGTTCATCTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	38842169	38831518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38832197_38839827_38840126_38842021
transcript_102043.known	chr5	-	425	3	FSM	ENSMUSG00000046572.11	ENSMUST00000178760.2	425	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	98.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTATACCACACAAGTG	NA	False	NA	NA	False	NA	NA	NA	38842100	38831969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_38832018_38839827_38840126_38842021
transcript_102050.known	chr5	-	1684	2	FSM	ENSMUSG00000051022.8	ENSMUST00000053116.7	1684	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGTTGCTCCTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	39801977	39771281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_39772748_39801759
transcript_102052.known	chr5	-	1697	8	FSM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	195.851880725393	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865464	41782318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_41783206_41784329_41784425_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
transcript_102054.known	chr5	-	1635	7	FSM	ENSMUSG00000029128.13	ENSMUST00000031011.12	1635	7	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_3	45.374980869295	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865497	41782318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
transcript_102055.known	chr5	-	863	7	FSM	ENSMUSG00000029128.13	ENSMUST00000202913.2	863	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	193.008419505471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTTGGGATTTTCAT	NA	False	NA	-5	True	AATAAA	-13	NA	41865500	41782319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_41782432_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
transcript_102056.nnic	chr5	-	1581	6	NIC	ENSMUSG00000029128.13	novel	1635	7	NA	NA	-32	0	combination_of_known_splicesites	FALSE	canonical	3	38	junction_4	194.631549343882	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865532	41782318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41860780_41860878_41865247
transcript_102061.known	chr5	-	10399	26	FSM	ENSMUSG00000061755.11	ENSMUST00000202908.2	10399	26	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_22	25.3587381389532	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAGTGACAAGAATTTTT	NA	False	NA	0	True	TATAAA	-22	NA	42001658	41944880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_41946293_41951569_41951724_41952224_41952307_41952412_41952463_41955380_41955427_41957114_41957150_41957232_41957309_41958102_41958180_41958504_41958584_41962494_41962575_41964031_41964105_41964514_41964586_41966046_41966108_41967397_41967442_41970464_41970550_41971473_41971539_41973550_41979504_41981311_41981385_41983805_41983945_41984451_41984564_41986095_41986263_41988787_41988938_41989553_41990169_41991000_41991192_41995382_41995508_42001274
transcript_102068.nic	chr5	-	1220	4	ISM	ENSMUSG00000061755.11	ENSMUST00000202200.2	3387	9	-66	9834	-43	-9834	5prime_fragment	FALSE	canonical	3	42	junction_2	6.84754619472471	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATCACTCTAAAAGGAAT	NA	False	NA	41	True	AAGAAA	-29	NA	42001701	41989691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_41990169_41991000_41991192_41995382_41995508_42001274
transcript_102069.nic	chr5	-	1130	4	ISM	ENSMUSG00000061755.11	ENSMUST00000202200.2	3387	9	-66	9924	-43	-9924	5prime_fragment	FALSE	canonical	3	42	junction_2	6.84754619472471	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAATCAATGGACAAAGGA	NA	False	NA	-49	True	NA	NA	NA	42001701	41989781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_41990169_41991000_41991192_41995382_41995508_42001274
transcript_102070.nic	chr5	-	1005	4	ISM	ENSMUSG00000061755.11	ENSMUST00000202200.2	3387	9	-12	9995	11	-9995	5prime_fragment	FALSE	canonical	3	42	junction_2	6.84754619472471	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCATATGAAAGAGAATAATA	NA	False	NA	NA	False	ACTAAA	-3	NA	42001647	41989852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_41990169_41991000_41991192_41995382_41995508_42001274
transcript_102071.known	chr5	-	372	2	FSM	ENSMUSG00000104846.2	ENSMUST00000197178.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATTTTCCAGCTCTCTC	NA	False	NA	NA	False	GATAAA	-30	NA	43512602	43510389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_43510700_43512540
transcript_102074.known	chr5	+	4512	34	FSM	ENSMUSG00000039765.16	ENSMUST00000125866.4	4512	34	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	5.67306396307227	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATCATGGACTGGAGG	NA	False	NA	NA	False	ACTAAA	-3	NA	43829630	43896659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_43829747_43831033_43831158_43838630_43838720_43839040_43839146_43840441_43840544_43841381_43841556_43842599_43842763_43845465_43845603_43846259_43846392_43852426_43852637_43853867_43853975_43857280_43857422_43860532_43860690_43861202_43861445_43863398_43863577_43864084_43864242_43866385_43866534_43867846_43867986_43869581_43869786_43871850_43871944_43873095_43873188_43875894_43876063_43877682_43877789_43879730_43879841_43881042_43881140_43881615_43881715_43883537_43883715_43887198_43887403_43889719_43889810_43891169_43891284_43892657_43892793_43893375_43893499_43894837_43894897_43896639
transcript_102075.known	chr5	+	1194	9	FSM	ENSMUSG00000039765.16	ENSMUST00000142303.5	1194	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	5.04820512657717	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGCTTACTGAGTAGCT	NA	False	NA	NA	False	ATTAAA	-17	NA	43829630	43846443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_43829747_43831033_43831158_43838630_43838720_43839040_43839146_43840441_43840544_43841381_43841556_43842599_43842763_43845465_43845603_43846259
transcript_102083.known	chr5	-	2814	11	FSM	ENSMUSG00000039753.17	ENSMUST00000196483.5	2814	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	167.474057692527	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTGTGTTGTGATTT	8869	False	NA	-1	True	AATAAA	-28	NA	43939451	43901957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918195_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_102090.known	chr5	-	2306	10	FSM	ENSMUSG00000039753.17	ENSMUST00000124610.6	2306	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	33.8234340562579	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTTAAAATGACAAGTTGT	8876	False	NA	NA	False	TTTAAA	-2	NA	43939444	43907947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_102091.known	chr5	+	2856	9	FSM	ENSMUSG00000029082.18	ENSMUST00000101237.8	2856	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	2.97647022494766	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTATGTGAGTTGTGTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	43976232	44001328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_43976436_43977819_43977947_43978951_43979088_43979608_43979692_43982669_43982747_43983605_43983699_43994802_43994890_43997772_43997833_43999338
transcript_102092.known	chr5	-	4237	9	FSM	ENSMUSG00000039753.17	ENSMUST00000087465.11	4237	9	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	35.8704265377483	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTCTGAGCATTCAT	8857	False	NA	NA	False	NA	NA	NA	43939463	43913246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_102093.known	chr5	-	2731	6	FSM	ENSMUSG00000039753.17	ENSMUST00000143316.8	2731	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_2	25.4762634622898	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAATTTTACAGTTCTTT	8876	False	NA	NA	False	AAAAAG	-35	NA	43939444	43918373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_102095.known	chr5	-	2801	11	FSM	ENSMUSG00000039753.17	ENSMUST00000119523.8	2801	11	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_10	164.448046507096	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTTGTGTTGTGATTTT	8835	False	NA	0	True	AATAAA	-29	NA	43939485	43901956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43930951_43939306
transcript_102097.known	chr5	+	3270	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGTGCTTGGATTCAATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	44025894	44069717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
transcript_102098.known	chr5	+	881	1	FSM	ENSMUSG00000029084.6	ENSMUST00000196600.2	881	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAGAAAACAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	44026201	44027082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_44026200_44027100
transcript_102099.known	chr5	+	774	1	FSM	ENSMUSG00000033036.10	ENSMUST00000122204.3	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAACAACAAAAAA	NA	False	NA	NA	False	AATAAA	-36	NA	44070485	44071259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_44070500_44071300
transcript_102100.known	chr5	-	1161	2	FSM	ENSMUSG00000048373.9	ENSMUST00000061299.9	1161	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCACTGTTTCCTTCTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	44139106	44136201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_44137311_44139054
transcript_102101.known	chr5	-	1228	3	FSM	ENSMUSG00000048373.9	ENSMUST00000199894.2	1228	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGTTTCCTTCTGATAC	NA	False	NA	NA	False	AATAAA	-23	NA	44139121	44136199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_44137311_44137985_44138036_44139054
transcript_102103.known	chr5	-	3966	28	FSM	ENSMUSG00000029086.16	ENSMUST00000074113.13	3966	28	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_24	9.32068513939636	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTGTTTGGTCCTTAA	NA	False	NA	NA	False	AATAAA	-18	NA	44259296	44150961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44215967_44215995_44220467_44220527_44251736_44252111_44258989
transcript_102104.known	chr5	-	3664	27	FSM	ENSMUSG00000029086.16	ENSMUST00000087441.11	3664	27	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	5.3433861125628	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTGGTGTTTGGTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	44259023	44150963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
transcript_102107.known	chr5	-	3513	14	FSM	ENSMUSG00000046985.12	ENSMUST00000055128.12	3513	14	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	11.6390487421138	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTTCTTGTGGCAACG	NA	False	NA	5	True	AATAAA	-32	NA	44383964	44332495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_44334525_44336202_44336364_44340039_44340117_44341922_44341992_44342296_44342357_44343573_44343684_44345960_44346042_44349422_44349493_44349708_44349807_44350528_44350665_44351589_44351753_44361551_44361671_44375445_44375577_44383755
transcript_102115.known	chr5	-	1380	7	FSM	ENSMUSG00000015806.13	ENSMUST00000015950.12	1380	7	0	0	0	0	multi-exon	FALSE	canonical	3	819	junction_4	94.8542741964395	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607578	45591394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
transcript_102116.known	chr5	-	1232	7	FSM	ENSMUSG00000015806.13	ENSMUST00000118097.8	1232	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607513	45591394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607431
transcript_102124.known	chr5	+	2267	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	2428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTTCTGTGAAGGGTC	NA	False	NA	35	True	AATAAA	-34	NA	45650715	45670033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
transcript_10214.known	chr10	+	2140	14	FSM	ENSMUSG00000006345.11	ENSMUST00000134503.8	2140	14	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	59.3897965057474	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGTCTTGTGTATGA	NA	False	NA	36	True	NA	NA	NA	75404489	75422034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75404605_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_102148.known	chr5	+	838	6	FSM	ENSMUSG00000039682.13	ENSMUST00000137699.3	838	6	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	195.982039993465	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCACTGTGGGCAGTGCC	NA	False	NA	NA	False	NA	NA	NA	45650845	45658087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744
transcript_102151.known	chr5	+	4560	4	FSM	ENSMUSG00000015804.15	ENSMUST00000156481.8	4560	4	0	0	0	0	multi-exon	FALSE	canonical	3	1736	junction_3	82.366390124991	1018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCCAGTGTCTTCAGCTT	7332	False	NA	NA	False	ATTAAA	-22	NA	45677570	45686618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_45677827_45679777_45679845_45680763_45680877_45682494
transcript_102153.known	chr5	+	734	3	FSM	ENSMUSG00000015804.15	ENSMUST00000118833.3	734	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	958.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTTAGACTGTTAGAGT	7406	False	NA	61	True	NA	NA	NA	45677644	45682979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_45677827_45679777_45679845_45682494
transcript_102154.known	chr5	+	636	2	FSM	ENSMUSG00000015804.15	ENSMUST00000119579.3	636	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTTGTTGTTTGTA	7398	False	NA	22	True	AGTAAA	-11	NA	45677636	45682940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_45677827_45682494
transcript_102155.known	chr5	-	1007	1	FSM	ENSMUSG00000104986.2	ENSMUST00000196242.2	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTGTGTGTGTGTCAT	5102	False	NA	NA	False	AATAAA	-32	NA	45827050	45826043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_45826000_45827000
transcript_102156.known	chr5	-	439	5	FSM	ENSMUSG00000015882.19	ENSMUST00000187615.7	439	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	27.6077434789589	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTTGCTCAGGAATTAAT	NA	False	NA	NA	False	NA	NA	NA	46014823	45904617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014692
transcript_102160.known	chr5	+	3703	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAACAGTTGTTCTGAGA	NA	False	NA	NA	False	ATTAAA	-18	NA	45827260	45857888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
transcript_10217.nic	chr10	+	2431	14	NIC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	-79	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	60.7702044712644	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75404388	75422025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_75404804_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_102175.nic	chr5	+	1764	11	ISM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	-87	18714	-87	1806	5prime_fragment	FALSE	canonical	3	458	junction_5	29.7323056623599	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTGGAAGATGCCAAAATA	NA	False	NA	NA	False	AATAAA	-3	NA	45827173	45839174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068
transcript_102179.nic	chr5	+	1594	10	ISM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	-32	19100	-32	1420	5prime_fragment	FALSE	canonical	3	458	junction_5	30.2524358778464	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCAAGGTATGTCTCTT	NA	False	NA	NA	False	AAGAAA	-5	NA	45827228	45838788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713
transcript_102185.known	chr5	+	7758	38	FSM	ENSMUSG00000031558.16	ENSMUST00000170109.9	7758	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	38.7871078714865	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTCCCACGTTAACCTGT	NA	False	NA	16	True	AATAAA	-18	NA	48140495	48462853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587_48339660_48343837_48343910_48346770_48346935_48348344_48348357_48349534_48349674_48368097_48368170_48368624_48368697_48374793_48374866_48377003_48377148_48377258_48377423_48378308_48378333_48381994_48382146_48387601_48387677_48389253_48389398_48392679_48392824_48394597_48394765_48395717_48395851_48399890_48399960_48401969_48402042_48402918_48402991_48404491_48404564_48407119_48407284_48414098_48414224_48414347_48414446_48416885_48417026_48432923_48433018_48439058_48439197_48439286_48439528_48440729_48440861_48453750_48453906_48459607_48459897_48460094_48460307_48461341
transcript_102186.known	chr5	+	7734	37	FSM	ENSMUSG00000031558.16	ENSMUST00000174313.8	7734	37	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	39.5336530341205	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTCCCACGTTAACCTGT	NA	False	NA	16	True	AATAAA	-18	NA	48140495	48462853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587_48339660_48343837_48343910_48346770_48346935_48348344_48348357_48349534_48349674_48368097_48368170_48368624_48368697_48374793_48374866_48377003_48377148_48377258_48377423_48381994_48382146_48387601_48387677_48389253_48389398_48392679_48392824_48394597_48394765_48395717_48395851_48399890_48399960_48401969_48402042_48402918_48402991_48404491_48404564_48407119_48407284_48414098_48414224_48414347_48414446_48416885_48417026_48432923_48433018_48439058_48439197_48439286_48439528_48440729_48440861_48453750_48453906_48459607_48459897_48460094_48460307_48461341
transcript_102188.known	chr5	+	9960	36	FSM	ENSMUSG00000031558.16	ENSMUST00000173107.8	9960	36	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_14	20.9676913758442	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTGCCCTGTGGGCAAG	NA	False	NA	NA	False	NA	NA	NA	48140479	48465075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587_48339660_48343837_48343910_48346770_48346935_48349534_48349674_48368097_48368170_48368624_48368697_48374793_48374866_48377003_48377148_48377258_48377423_48381994_48382146_48387601_48387677_48389253_48389398_48392679_48392824_48394597_48394765_48395717_48395851_48399890_48399960_48401969_48402042_48402918_48402991_48404491_48404564_48407119_48407284_48414098_48414224_48414347_48414446_48416885_48417026_48432923_48433018_48439058_48439197_48439286_48439528_48440729_48440861_48453750_48453906_48459607_48459897_48460094_48460307_48461341
transcript_102195.known	chr5	+	3265	6	FSM	ENSMUSG00000031558.16	ENSMUST00000172998.8	3265	6	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	11.9833217431562	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAAACTT	NA	False	NA	NA	False	NA	NA	NA	48140495	48340499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587
transcript_102197.known	chr5	+	2492	1	FSM	ENSMUSG00000031558.16	ENSMUST00000196024.2	2492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAATCTTTCCC	NA	False	NA	NA	False	NA	NA	NA	48140518	48143010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_48140500_48143000
transcript_102199.known	chr5	+	1616	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	13	True	ATTAAA	-21	NA	48529670	48546187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
transcript_1022.known	chr1	-	1659	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722264	36639056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
transcript_102203.known	chr5	+	1422	8	FSM	ENSMUSG00000029089.9	ENSMUST00000200566.5	1422	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	26.2717354134182	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTAGTTCTACATATATG	NA	False	NA	14	True	ATTAAA	-22	NA	48529774	48546188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48545444
transcript_102211.nnic	chr5	-	4696	20	NIC	ENSMUSG00000029090.13	novel	4480	19	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_18	145.136195469831	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTGTGCTGGTGGCTT	NA	False	NA	-10	True	AATAAA	-14	NA	50216354	50117297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_50118857_50118989_50119086_50121032_50121179_50128031_50128156_50129292_50129418_50136284_50136494_50136701_50136916_50144815_50145020_50147466_50147629_50155556_50155713_50156474_50156677_50159196_50159362_50164090_50164305_50166677_50166839_50168832_50168905_50170734_50170807_50174168_50174241_50183048_50183121_50215475_50215686_50215893
transcript_102215.known	chr5	-	4480	19	FSM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_6	33.7942668086734	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTGTGCTGGTGGCTT	NA	False	NA	-10	True	AATAAA	-14	NA	50216348	50117297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_50118857_50118989_50119086_50121032_50121179_50128031_50128156_50129292_50129418_50136284_50136494_50136701_50136916_50144815_50145020_50147466_50147629_50155556_50155713_50156474_50156677_50159196_50159362_50164090_50164305_50166677_50166839_50168832_50168905_50170734_50170807_50174168_50174241_50183048_50183121_50215893
transcript_102236.known	chr5	-	2375	14	FSM	ENSMUSG00000029169.12	ENSMUST00000200186.5	2375	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	209.215072940651	946	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTCAATCCAAGGAATAT	NA	False	NA	NA	False	NA	NA	NA	52347719	52308034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314912_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
transcript_102254.known	chr5	-	6273	8	FSM	ENSMUSG00000039252.12	ENSMUST00000199942.5	6273	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	6.36636570147348	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGCTTTGATCTCTGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	52723645	52690858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_52696123_52703794_52703960_52711744_52711915_52713003_52713076_52717504_52717577_52719467_52719540_52721307_52721380_52723259
transcript_102255.known	chr5	-	5252	11	FSM	ENSMUSG00000029173.13	ENSMUST00000031069.13	5252	11	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	10.2493902257647	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAAGTCTTCTTGCACT	NA	False	NA	24	True	AATAAA	-41	NA	52827050	52797428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826240_52826396_52826916
transcript_102263.known	chr5	+	3139	10	FSM	ENSMUSG00000029186.13	ENSMUST00000031081.11	3139	10	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	14.8099065943487	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCATTGTTCTGTGTATT	NA	False	NA	7	True	AATAAA	-16	NA	52898915	52926682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_52899311_52905710_52905848_52907949_52908151_52908763_52908896_52910437_52910592_52911978_52912047_52914207_52914308_52918215_52918350_52919773_52919834_52924924
transcript_102270.known	chr5	+	2485	13	FSM	ENSMUSG00000029179.15	ENSMUST00000113904.9	2485	13	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_12	14.4327944472148	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTCAGTTGTTATTCC	NA	False	NA	21	True	ATTAAA	-17	NA	52940395	52982007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
transcript_102275.known	chr5	+	5743	12	FSM	ENSMUSG00000029179.15	ENSMUST00000031077.13	5743	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_6	13.7197450763007	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTGTGCTCATTCCATA	NA	False	NA	NA	False	ATTAAA	-20	NA	52940395	52980913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462
transcript_10228.known	chr10	-	3151	15	FSM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_6	11.246768243294	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTTCCCGTCTGTTTGT	NA	False	NA	-1	True	NA	NA	NA	75479825	75472539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
transcript_102281.known	chr5	+	4194	5	FSM	ENSMUSG00000029179.15	ENSMUST00000157074.6	4194	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	7.15454401062709	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-5	NA	52940427	52957510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923
transcript_102284.known	chr5	+	3854	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGCGTGTTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	52991353	53025139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
transcript_102291.known	chr5	+	931	4	FSM	ENSMUSG00000061461.12	ENSMUST00000204465.2	931	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	153.686549689801	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3446	False	NA	13	True	ATTAAA	-14	NA	53424518	53435882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_53424701_53425364_53425413_53434484_53434542_53435238
transcript_102293.known	chr5	+	1231	4	FSM	ENSMUSG00000061461.12	ENSMUST00000204218.3	1231	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	153.686549689801	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3407	False	NA	13	True	ATTAAA	-14	NA	53424479	53435882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_53424701_53425364_53425674_53434484_53434542_53435238
transcript_102295.known	chr5	+	922	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	5	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3407	False	NA	13	True	ATTAAA	-14	NA	53424479	53435882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_53424701_53434484_53434542_53435238
transcript_102297.known	chr5	+	2076	1	FSM	ENSMUSG00000061461.12	ENSMUST00000204839.2	2076	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	3459	False	NA	NA	False	NA	NA	NA	53424531	53426607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_53424500_53426600
transcript_102300.known	chr5	+	5252	11	FSM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	131.697532247191	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGTAGATGTCTTCTGT	NA	False	NA	12	True	AATAAA	-18	NA	53713175	53814700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
transcript_102305.known	chr5	+	5459	11	FSM	ENSMUSG00000039191.13	ENSMUST00000037618.13	5459	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	139.803576492163	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGATGTCTTCTGTGGGA	NA	False	NA	16	True	AATAAA	-22	NA	53747555	53814704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_53747829_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
transcript_102309.known	chr5	+	5440	11	FSM	ENSMUSG00000039191.13	ENSMUST00000113865.5	5440	11	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	104.823470654239	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGATGTCTTCTGTGGGA	NA	False	NA	16	True	AATAAA	-22	NA	53747812	53814704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_53748067_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
transcript_102314.nic	chr5	+	1041	9	ISM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	-77	4726	51	1173	5prime_fragment	FALSE	canonical	3	64	junction_1	144.423855370226	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGGAAATGATAAACGATG	NA	False	NA	NA	False	NA	NA	NA	53713098	53809974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948
transcript_10233.known	chr10	-	3348	14	FSM	ENSMUSG00000006342.16	ENSMUST00000218896.2	3348	14	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_6	11.6059564384876	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTCCCGTCTGTTTG	NA	False	NA	-2	True	NA	NA	NA	75479842	75472540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
transcript_102330.known	chr5	+	2242	21	FSM	ENSMUSG00000039178.10	ENSMUST00000201958.4	2242	21	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	19.8148303045976	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACAGATATCTCTAATAA	NA	False	NA	NA	False	ATTAAA	-20	NA	53966995	54061305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_53967201_53986691_53986765_53987796_53987841_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54017485_54017549_54029594_54029680_54032228_54032274_54041003_54041037_54044695_54044806_54046657_54046750_54054332_54054449_54058918_54058990_54060673
transcript_102337.known	chr5	+	4892	13	FSM	ENSMUSG00000039156.20	ENSMUST00000201469.4	4892	13	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_9	82.5821140172347	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTGTGGTTTTTGCTAG	NA	False	NA	NA	False	ATTAAA	-14	NA	54155906	54278399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_54156377_54210717_54210849_54232621_54232737_54259916_54260029_54260914_54261031_54261734_54261913_54262562_54262741_54267044_54267213_54267457_54267482_54267878_54267980_54268213_54268453_54273260_54273535_54275613
transcript_102338.known	chr5	+	4934	12	FSM	ENSMUSG00000039156.20	ENSMUST00000117661.9	4934	12	0	0	0	0	multi-exon	TRUE	canonical	3	168	junction_8	27.7566163655824	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTGTGGTTTTTGCTAG	NA	False	NA	NA	False	ATTAAA	-14	NA	54155840	54278399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_54156377_54210717_54210849_54232621_54232737_54259916_54260029_54260914_54261031_54261734_54261913_54262562_54262741_54267044_54267213_54267878_54267980_54268213_54268453_54273260_54273535_54275613
transcript_102342.nic	chr5	+	1567	8	ISM	ENSMUSG00000039156.20	ENSMUST00000117661.9	4934	12	-34	11188	-34	5380	5prime_fragment	FALSE	canonical	3	195	junction_6	25.4830876288969	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTCTCTTATTTCATGA	NA	False	NA	0	True	NA	NA	NA	54155806	54267211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_54156377_54210717_54210849_54232621_54232737_54259916_54260029_54260914_54261031_54261734_54261913_54262562_54262741_54267044
transcript_102348.known	chr5	+	935	5	FSM	ENSMUSG00000060512.8	ENSMUST00000196575.5	935	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.08220700148449	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCGGGAATTCAGCCCAG	1942	False	NA	NA	False	AAGAAA	-39	NA	63969862	64055910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_63969939_64033792_64033843_64045387_64045530_64053772_64053827_64055297
transcript_102349.known	chr5	+	2008	4	FSM	ENSMUSG00000060512.8	ENSMUST00000081747.8	2008	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.942809041582063	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTATATGTGTCTCCC	1785	False	NA	NA	False	ATTAAA	-22	NA	63969705	64056968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_63969939_64033792_64033843_64053772_64053827_64055297
transcript_102351.known	chr5	-	3093	8	FSM	ENSMUSG00000047881.15	ENSMUST00000087327.13	3093	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	231.259726767308	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGCGACATCTTACAGGA	NA	False	NA	-13	True	AATAAA	-23	NA	64126166	64066407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64097011_64097106_64125988
transcript_102355.known	chr5	-	3241	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTCAGTCTGCTAATCT	NA	False	NA	NA	False	NA	NA	NA	64126240	64066239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
transcript_10236.known	chr10	-	2275	13	FSM	ENSMUSG00000006342.16	ENSMUST00000077610.6	2275	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	20.894410470001	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATACCTGTCCTAGCCTG	NA	False	NA	NA	False	NA	NA	NA	75479814	75473044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75479707
transcript_102368.known	chr5	+	2369	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATAAGGTTTATTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	64250292	64285694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
transcript_102371.known	chr5	+	5432	20	FSM	ENSMUSG00000029174.19	ENSMUST00000101195.9	5432	20	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	77.9717968757502	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTCGTGTTGTCTGTTTT	NA	False	NA	10	True	AATAAA	-20	NA	64317553	64508829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_64317849_64330730_64331240_64414057_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594_64502769_64507072
transcript_102374.known	chr5	+	4760	19	FSM	ENSMUSG00000029174.19	ENSMUST00000119756.6	4760	19	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_12	24.8002513925928	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTCGTGTTGTCTGTTTT	8516	False	NA	10	True	AATAAA	-20	NA	64387741	64508829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_64387874_64414057_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594_64502769_64507072
transcript_102377.nic	chr5	+	2995	18	ISM	ENSMUSG00000029174.19	ENSMUST00000119756.6	4760	19	-63	6132	-63	-6127	5prime_fragment	FALSE	canonical	3	216	junction_12	25.3445461739059	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATGGAGAAATTGGAGAAA	8453	False	NA	NA	False	NA	NA	NA	64387678	64502697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_64387874_64414057_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594
transcript_102384.known	chr5	-	2879	4	FSM	ENSMUSG00000105402.5	ENSMUST00000198582.5	2879	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	4.89897948556636	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTTTGTTTGTTTG	NA	False	NA	NA	False	TTTAAA	-18	NA	64768043	64751199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_64753667_64759324_64759493_64767442_64767499_64767855
transcript_102394.known	chr5	+	5221	6	FSM	ENSMUSG00000029178.15	ENSMUST00000165536.8	5221	6	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	186.681547025945	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATAATCATGTGATTACT	NA	False	NA	8	True	AATAAA	-16	NA	64960730	64990244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
transcript_102404.known	chr5	+	1026	4	FSM	ENSMUSG00000029178.15	ENSMUST00000200587.5	1026	4	0	0	0	0	multi-exon	FALSE	canonical	3	600	junction_1	49.9266128098699	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	NA	False	NA	18	True	AATAAA	-18	NA	64960919	64980452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_64961135_64974077_64974174_64979216_64979701_64980221
transcript_102406.known	chr5	+	1562	6	FSM	ENSMUSG00000029178.15	ENSMUST00000166409.6	1562	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	271.090390829332	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACGACCAATTTGTCGGTT	8246	False	NA	-65	True	NA	NA	NA	64969681	64986825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_64969847_64974078_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
transcript_102413.known	chr5	+	590	3	FSM	ENSMUSG00000029178.15	ENSMUST00000197879.2	590	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	355	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCAGCCCGTCGTGGTC	8291	False	NA	NA	False	NA	NA	NA	64969726	64979586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_64969851_64974077_64974174_64979216
transcript_102417.known	chr5	+	809	3	FSM	ENSMUSG00000029178.15	ENSMUST00000198946.2	809	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	148.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATCCAGCCTATTAGTC	NA	False	NA	3	True	AGTAAA	-14	NA	64984151	64986893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_64984226_64984452_64984614_64986319
transcript_102419.known	chr5	+	3149	11	FSM	ENSMUSG00000054920.13	ENSMUST00000204097.3	3149	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_10	19.4393929946385	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTTCTGGTTAATATAT	NA	False	NA	NA	False	TATAAA	-36	NA	65264881	65325449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931_65306145_65313397_65313585_65316126_65316352_65318384_65318548_65320132_65320346_65321873_65322046_65324313
transcript_102425.nnic	chr5	+	1221	6	NNC	ENSMUSG00000054920.13	novel	3149	11	NA	NA	5	-3944	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	25.9121593079388	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTAAAGAGGGCACTTAA	NA	False	NA	22	True	AATAAA	-19	NA	65264886	65307053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931_65306145_65306880
transcript_102426.nic	chr5	+	2261	6	ISM	ENSMUSG00000054920.13	ENSMUST00000204097.3	3149	11	-2	10846	-2	3606	5prime_fragment	FALSE	canonical	3	58	junction_5	13.0843417870369	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTGAAAATTCATCAATGG	NA	False	NA	NA	False	NA	NA	NA	65264879	65314603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931_65306145_65313397
transcript_102427.nic	chr5	+	2489	6	ISM	ENSMUSG00000054920.13	ENSMUST00000204097.3	3149	11	-10	10626	-10	3826	5prime_fragment	FALSE	canonical	3	58	junction_5	13.0843417870369	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGTGTTTAGAAGGGATT	NA	False	NA	NA	False	AGTAAA	-17	NA	65264871	65314823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931_65306145_65313397
transcript_102428.nic	chr5	+	1972	5	ISM	ENSMUSG00000054920.13	ENSMUST00000204097.3	3149	11	-10	18396	-10	-3944	5prime_fragment	FALSE	canonical	3	68	junction_1	10.0591997693654	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTAAAGAGGGCACTTAA	NA	False	NA	22	True	AATAAA	-19	NA	65264871	65307053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_65265205_65298602_65298786_65300581_65300719_65301901_65302099_65305931
transcript_102429.known	chr5	+	4401	37	FSM	ENSMUSG00000037890.14	ENSMUST00000041892.13	4401	37	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_26	8.39311887467611	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCCTGGATTTGATTT	8552	False	NA	NA	False	AATAAA	-23	NA	65357040	65417758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462_65401588_65403138_65403252_65404803_65404873_65406132_65406211_65408241_65408339_65409621_65409747_65412393_65412476_65413623_65413775_65414344_65414469_65415078_65415156_65415446_65415572_65417456
transcript_102430.known	chr5	+	6279	36	FSM	ENSMUSG00000037890.14	ENSMUST00000203653.3	6279	36	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_26	8.32581429491851	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATCTAACATTTTCCTGG	8550	False	NA	NA	False	AATAAA	-14	NA	65357038	65417749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462_65401588_65403138_65403252_65404803_65404873_65406132_65406211_65408241_65408339_65409621_65409747_65412393_65412476_65413623_65413775_65414344_65414469_65415078_65415156_65415446
transcript_102434.known	chr5	+	3381	26	FSM	ENSMUSG00000037890.14	ENSMUST00000204647.3	3381	26	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	5.73606136647787	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTGCATGCCCCCTAT	8571	False	NA	NA	False	NA	NA	NA	65357059	65401929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462
transcript_102438.nic	chr5	-	4767	25	NIC	ENSMUSG00000029191.17	novel	4689	25	NA	NA	-14	0	combination_of_known_junctions	TRUE	canonical	3	185	junction_1	102.558519880115	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGAGTCTTGCCCCTCT	NA	False	NA	-2	True	AATAAA	-21	NA	65493027	65419192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_65420493_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_102439.known	chr5	-	3952	25	FSM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	103.759328563213	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACCACCTGGAGCCGAGT	-14	True	NA	NA	False	AATAAA	-16	NA	65492961	65419944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65420493_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_102440.known	chr5	-	4699	25	FSM	ENSMUSG00000029191.17	ENSMUST00000172732.8	4699	25	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_12	79.0184138174275	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	-17	True	NA	-4	True	AATAAA	-19	NA	65492964	65419194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_102441.known	chr5	-	4751	25	FSM	ENSMUSG00000029191.17	ENSMUST00000204965.3	4751	25	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_12	80.615847887097	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	NA	False	NA	-4	True	AATAAA	-19	NA	65493013	65419194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_10245.known	chr10	-	7417	37	FSM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_35	14.4571258434836	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTCTTTGCTCATC	NA	False	NA	-4	True	AATAAA	-13	NA	75600150	75481945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549286_75549466_75551432_75551585_75553271_75553533_75557111_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799_75571043_75573154_75573350_75574044_75574198_75575159_75575348_75575853_75575933_75578078_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
transcript_102458.nic	chr5	-	1681	13	ISM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-66	17169	-14	-15525	5prime_fragment	FALSE	canonical	3	498	junction_1	41.5333701176937	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGATCAAGGAAAAAGAAAAA	NA	False	NA	NA	False	AAGAAA	-36	NA	65493027	65437113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_102463.nic	chr5	-	1193	9	ISM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-66	31107	-14	17262	5prime_fragment	FALSE	canonical	3	518	junction_2	41.2340878400384	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAGAAAACAACTCCTAA	NA	False	NA	NA	False	AAGAAA	-23	NA	65493027	65451051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_102465.nic	chr5	-	1131	9	ISM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-66	31169	-14	17200	5prime_fragment	FALSE	canonical	3	518	junction_2	41.2340878400384	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCTTACAACGAAACAGAG	NA	False	NA	NA	False	AAGAAA	-1	NA	65493027	65451113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_102468.nic	chr5	-	586	5	ISM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	-66	40507	-14	7862	5prime_fragment	FALSE	canonical	3	537	junction_2	34.5144897108446	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAAAACGTTAAGACTA	NA	False	NA	NA	False	NA	NA	NA	65493027	65460451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_102471.known	chr5	-	485	4	FSM	ENSMUSG00000029191.17	ENSMUST00000203644.2	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_1	39.3474550920669	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCTTGTGTGGTAA	-9	True	NA	NA	False	NA	NA	NA	65492956	65468313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65468507_65470300_65470377_65476747_65476874_65492866
transcript_102472.nic	chr5	-	337	3	ISM	ENSMUSG00000029191.17	ENSMUST00000203644.2	485	4	-71	2013	-14	-2013	5prime_fragment	FALSE	canonical	3	610	junction_1	9	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAGAGGATCATCAATG	NA	False	NA	NA	False	NA	NA	NA	65493027	65470326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_65470377_65476747_65476874_65492866
transcript_102474.nic	chr5	+	2787	4	ISM	ENSMUSG00000029195.11	ENSMUST00000031096.11	3540	5	23472	0	23378	0	3prime_fragment	FALSE	canonical	3	98	junction_2	21.6024689946929	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGTCTTAGACTTCG	NA	False	NA	24	True	AAAAAG	-6	NA	65529128	65541350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_65529804_65533022_65533292_65536270_65537415_65540651
transcript_102475.nic	chr5	+	2459	4	NIC	ENSMUSG00000029195.11	novel	3540	5	NA	NA	23456	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	56.6058497173413	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGTCTTAGACTTCG	NA	False	NA	24	True	AAAAAG	-6	NA	65529206	65541350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_65529554_65533022_65533292_65536270_65537415_65540651
transcript_102480.known	chr5	-	738	8	FSM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_7	3201.89202994551	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548787	65545706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
transcript_102484.known	chr5	-	680	7	FSM	ENSMUSG00000047215.15	ENSMUST00000120094.5	680	7	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_6	3284.20622914511	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCAGAAGATTTTACATG	NA	False	NA	-120	True	ATTAAA	-32	NA	65548723	65545820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
transcript_102487.known	chr5	-	675	7	FSM	ENSMUSG00000047215.15	ENSMUST00000196667.5	675	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	5003.25345539169	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTATATATTGATTTGTG	NA	False	NA	-20	True	AATAAA	-2	NA	65548329	65545720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65545811_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
transcript_102490.known	chr5	+	1668	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCGTGTGTGTATGTGT	6886	False	NA	48	True	AAAAAG	-11	NA	65548839	65566550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
transcript_102493.known	chr5	+	2996	11	FSM	ENSMUSG00000029199.12	ENSMUST00000031101.10	2996	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	106.686643962588	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATGGCTGTCCATATCA	6929	False	NA	NA	False	GATAAA	-34	NA	65548882	65568036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65549017_65549677_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
transcript_102496.known	chr5	+	622	4	FSM	ENSMUSG00000029199.12	ENSMUST00000126036.2	622	4	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_1	27.1456974286698	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTCTCTCTGAATTAAT	6953	False	NA	NA	False	TATAAA	-43	NA	65548906	65552955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707
transcript_10250.nic	chr10	-	2164	11	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	-40	96786	-15	7168	5prime_fragment	FALSE	canonical	3	63	junction_9	9.60676844729798	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGGAGGAGCTGCCTGT	NA	False	NA	NA	False	TTTAAA	-2	NA	75600190	75578731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
transcript_102502.nic	chr5	-	2412	12	NIC	ENSMUSG00000029201.15	novel	2550	12	NA	NA	-114	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_11	127.934900801053	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTCAATTTACGTATG	NA	False	NA	-13	True	AATAAA	-22	NA	65585844	65570563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65585656
transcript_102503.known	chr5	-	2550	12	FSM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_10	43.2746370854342	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTCAATTTACGTATG	NA	False	NA	-13	True	AATAAA	-22	NA	65593292	65570563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
transcript_102507.known	chr5	-	4560	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGTTTTCTGTTTGACTT	NA	False	NA	-3	True	AATAAA	-19	NA	65650743	65604186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
transcript_102508.known	chr5	-	1056	5	FSM	ENSMUSG00000037822.13	ENSMUST00000121661.8	1056	5	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_4	163.329421721869	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650403	65607145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650283
transcript_10251.nic	chr10	-	1673	10	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	-40	99167	-15	4787	5prime_fragment	FALSE	canonical	3	63	junction_8	9.01986833004551	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAAAGTGGATTTCCA	NA	False	NA	NA	False	NA	NA	NA	75600190	75581112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
transcript_102511.known	chr5	+	4893	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATGTTTTATATCTCATT	NA	False	NA	12	True	AATAAA	-20	NA	65694575	65756331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_102512.known	chr5	+	1529	7	FSM	ENSMUSG00000029203.17	ENSMUST00000201292.4	1529	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	633.60961079271	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694618	65753098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65694802_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_102513.nic	chr5	+	733	6	ISM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	46	4440	3	0	5prime_fragment	FALSE	canonical	0	0	junction_2	541.030646082087	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTACCGAAAAGACCAC	NA	False	NA	NA	False	AATACA	-42	NA	65694621	65751891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762
transcript_102514.known	chr5	+	4682	6	FSM	ENSMUSG00000029203.17	ENSMUST00000202679.4	4682	6	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_1	338.408628731597	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATTTTCCCCATTAT	NA	False	NA	7	True	AATAAA	-15	NA	65694633	65756272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65694890_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_102515.known	chr5	+	4506	5	FSM	ENSMUSG00000029203.17	ENSMUST00000202082.4	4506	5	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	597.682346652467	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATTTTCCCCATTAT	NA	False	NA	7	True	AATAAA	-15	NA	65694662	65756272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65694802_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_102517.known	chr5	+	1449	5	FSM	ENSMUSG00000029203.17	ENSMUST00000201984.4	1449	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	582.178398345387	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694633	65753098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65694890_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_102519.known	chr5	-	8934	33	FSM	ENSMUSG00000029202.13	ENSMUST00000201948.4	8934	33	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	144.526459380065	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTTCTCCAATTTTATT	2746	False	NA	NA	False	ATTAAA	-21	NA	65855511	65763063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65767539_65772601_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65855092
transcript_102520.nnic	chr5	-	6640	33	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	-8406	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	164.041602835797	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTAGAAGTGTGGAAACG	NA	False	NA	NA	False	AATAAA	-18	NA	65864022	65765121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_65767539_65772601_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65863839
transcript_10253.nic	chr10	-	2343	9	NIC	ENSMUSG00000020196.11	novel	7417	37	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_8	35.6578795639898	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTCTTTGCTCATC	NA	False	NA	-4	True	AATAAA	-13	NA	75503941	75481945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75503848
transcript_102534.known	chr5	-	4146	32	FSM	ENSMUSG00000029202.13	ENSMUST00000031104.7	4146	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	110.823584157033	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGACCCCACTCATCCTCA	3058	False	NA	2	True	AAAAAG	-40	NA	65855199	65772602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65855092
transcript_102554.known	chr5	+	5308	18	FSM	ENSMUSG00000037795.15	ENSMUST00000087264.4	5308	18	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	21.723490387184	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTAGAGCCCTGGACTTT	NA	False	NA	NA	False	NA	NA	NA	65921462	65983993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65921589_65928729_65928785_65932927_65933007_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
transcript_102558.known	chr5	+	4767	14	FSM	ENSMUSG00000037795.15	ENSMUST00000201615.4	4767	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	21.8336909195765	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAAAGGTATGGA	NA	False	NA	NA	False	NA	NA	NA	65921462	65974627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_65921589_65928729_65928785_65932927_65933007_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504
transcript_10256.known	chr10	-	687	6	FSM	ENSMUSG00000001665.12	ENSMUST00000173537.2	687	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.6470653233649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGGAGGCCCATGAAGTT	NA	False	NA	NA	False	NA	NA	NA	75616852	75610753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75610845_75611323_75611332_75611704_75611882_75612577_75612729_75613934_75614023_75616680
transcript_102568.nnic	chr5	+	3204	11	NIC	ENSMUSG00000037795.15	novel	9055	20	NA	NA	40	2453	combination_of_known_splicesites	FALSE	canonical	3	26	junction_4	23.591523901605	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACCATTGGAAAACAAAAAG	NA	False	NA	NA	False	AAGAAA	-20	NA	65920903	65964003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_65921589_65928729_65928785_65932927_65933007_65941652_65941720_65943448_65943705_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532
transcript_10257.known	chr10	-	1880	5	FSM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	2.34520787991171	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGCTTCTGGATCCT	NA	False	NA	5	True	AATAAA	-23	NA	75617248	75609948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75610845_75611704_75611882_75612577_75612729_75613934_75614023_75616680
transcript_102576.nic	chr5	+	2474	9	ISM	ENSMUSG00000037795.15	ENSMUST00000201615.4	4767	14	-152	10624	-11	2453	5prime_fragment	FALSE	canonical	3	26	junction_3	21.6101827849743	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACCATTGGAAAACAAAAAG	NA	False	NA	NA	False	AAGAAA	-20	NA	65921310	65964003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_65921589_65928729_65928785_65932927_65933007_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532
transcript_102578.nic	chr5	+	3194	9	ISM	ENSMUSG00000037795.15	ENSMUST00000201615.4	4767	14	-96	9848	45	3229	5prime_fragment	FALSE	canonical	3	26	junction_3	21.6101827849743	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGTTTCAGATTCTGTC	NA	False	NA	NA	False	AATAAA	-2	NA	65921366	65964779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_65921589_65928729_65928785_65932927_65933007_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532
transcript_10258.known	chr10	-	649	3	FSM	ENSMUSG00000001666.9	ENSMUST00000001716.8	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	12	315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGACTTCTTTGCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	75609248	75607066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75607341_75608571_75608748_75609049
transcript_102583.nic	chr5	-	2957	7	NIC	ENSMUSG00000070780.12	novel	3180	7	NA	NA	-217	-148	intron_retention	FALSE	canonical	2	8	junction_6	12.9282206389313	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACCCGCGCATCTAGGG	NA	False	NA	NA	False	NA	NA	NA	66308883	66176092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308395
transcript_102584.nic	chr5	-	2783	7	ISM	ENSMUSG00000070780.12	ENSMUST00000167950.8	4895	8	72	2193	-64	-148	3prime_fragment	FALSE	canonical	3	18	junction_6	10.0235833025033	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACCCGCGCATCTAGGG	NA	False	NA	NA	False	NA	NA	NA	66309195	66176092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308881
transcript_102585.known	chr5	-	2973	6	FSM	ENSMUSG00000070780.12	ENSMUST00000094756.11	2973	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	18.7936159373336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTACTGTATTTCCACT	NA	False	NA	NA	False	TTTAAA	-42	NA	66308421	66175944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_66176780_66179970_66180177_66183472_66184633_66203429_66203557_66255049_66255132_66307858
transcript_102587.known	chr5	-	2398	4	FSM	ENSMUSG00000070780.12	ENSMUST00000202794.4	2398	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	15.6276108929747	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66308299	66182884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_66184633_66203429_66203557_66255049_66255132_66307858
transcript_10259.known	chr10	-	1037	5	FSM	ENSMUSG00000001663.11	ENSMUST00000001713.10	1037	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.87228132326901	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCCGTGTTGTTTCTTT	9576	False	NA	NA	False	AATAAA	-24	NA	75634418	75619646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75620068_75622628_75622806_75629910_75630062_75632876_75632965_75634218
transcript_102590.nnic	chr5	-	3378	17	NNC	ENSMUSG00000029207.17	novel	6526	17	NA	NA	23567	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	32.8998836434113	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTCTTTTCAGATGGT	NA	False	NA	NA	False	ATTAAA	-24	NA	66752416	66459214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66549615_66549679_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66752306
transcript_102592.nnic	chr5	-	3809	17	NNC	ENSMUSG00000029207.17	novel	6526	17	NA	NA	-1596	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	27.1033179472551	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTCTTTTCAGATGGT	NA	False	NA	NA	False	ATTAAA	-24	NA	66777723	66459214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910_66776401_66777609
transcript_102595.nnic	chr5	-	3315	16	NNC	ENSMUSG00000029207.17	novel	6333	16	NA	NA	23567	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_15	19.4792196968975	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTCTTTTCAGATGGT	NA	False	NA	NA	False	ATTAAA	-24	NA	66752416	66459214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66752306
transcript_1026.known	chr1	-	3773	15	FSM	ENSMUSG00000026121.14	ENSMUST00000114991.8	3773	15	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_10	2.77102353446726	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATATTTTGACTCAAACCC	NA	False	NA	NA	False	AATAAA	-32	NA	36597430	36587722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36589450_36589586_36589658_36589748_36589910_36590806_36590920_36591007_36591231_36591332_36591478_36591799_36591976_36592059_36592212_36592304_36592422_36592551_36592649_36592796_36592896_36593006_36593070_36593332_36593482_36595012_36595159_36597096
transcript_10260.nnic	chr10	-	1013	6	NNC	ENSMUSG00000033318.8	novel	1370	5	NA	NA	-698	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	16.6805275695944	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75671413	75667678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008_75670242_75671296
transcript_102600.known	chr5	-	3037	2	FSM	ENSMUSG00000029207.17	ENSMUST00000159847.2	3037	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	66776031	66698044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_66700961_66775910
transcript_102601.known	chr5	-	3109	1	FSM	ENSMUSG00000106706.2	ENSMUST00000201865.2	3109	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAATCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	66752913	66749804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_66749800_66752900
transcript_102602.known	chr5	+	1177	9	FSM	ENSMUSG00000029223.13	ENSMUST00000031131.11	1177	9	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_4	35.1227757302865	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833433	66844577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_66833666_66833778_66833791_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
transcript_102603.nic	chr5	+	1551	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	-34	0	intron_retention	FALSE	canonical	3	449	junction_3	34.4211610282194	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66833550	66844572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_66833666_66833778_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
transcript_102605.known	chr5	+	980	7	FSM	ENSMUSG00000029223.13	ENSMUST00000176015.5	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_2	35.4479273802511	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66834234	66844572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
transcript_102606.known	chr5	+	2538	1	FSM	ENSMUSG00000037736.21	ENSMUST00000202830.2	2538	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCCACCA	4724	False	NA	NA	False	NA	NA	NA	66903209	66905747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_66903200_66905700
transcript_102609.known	chr5	+	5711	18	FSM	ENSMUSG00000029221.16	ENSMUST00000162372.8	5711	18	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_11	79.5528159088737	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTTTTTATCATATGCT	386	False	NA	NA	False	AATAAA	-20	NA	67464297	67515786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_67464541_67473020_67473189_67482016_67482077_67484195_67484296_67485040_67485134_67485784_67485868_67487235_67487295_67490396_67490465_67491908_67492012_67497293_67497350_67499436_67499573_67501872_67501913_67502968_67503041_67503468_67503577_67505262_67505429_67507124_67507255_67509994_67510109_67511874
transcript_102615.nnic	chr5	+	2870	16	NIC	ENSMUSG00000029221.16	novel	5711	18	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_9	109.607096282839	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACGGTAGTTTTCAATC	378	False	NA	15	True	AATAAA	-18	NA	67464289	67513129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_67464541_67473020_67473189_67482016_67482077_67484195_67484296_67485040_67485134_67485784_67485868_67487235_67487295_67490396_67490465_67491908_67492012_67501872_67501913_67502968_67503041_67503468_67503577_67505262_67505429_67507124_67507255_67509994_67510109_67511874
transcript_102618.known	chr5	+	383	3	FSM	ENSMUSG00000029221.16	ENSMUST00000159907.3	383	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	210.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTAGACCTTCCATTTG	615	False	NA	NA	False	NA	NA	NA	67464526	67476258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_67464541_67473020_67473189_67476057
transcript_102624.known	chr5	+	1714	7	FSM	ENSMUSG00000107385.4	ENSMUST00000202828.2	1714	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.18241233033047	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTAGCCCAGGTTCAT	8032	False	NA	NA	False	NA	NA	NA	67621245	67634641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67625991_67626159_67630824_67631405_67634249
transcript_102628.known	chr5	+	2764	5	FSM	ENSMUSG00000107385.4	ENSMUST00000201973.4	2764	5	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	4.76969600708473	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGACTTTTTCTTATTAT	8026	False	NA	NA	False	NA	NA	NA	67621239	67628174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67625991
transcript_10263.known	chr10	-	1449	1	FSM	ENSMUSG00000033318.8	ENSMUST00000218745.2	1449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-11	NA	75673258	75671809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75671800_75673300
transcript_102633.known	chr5	-	7154	37	FSM	ENSMUSG00000037685.16	ENSMUST00000072971.13	7154	37	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_22	14.894769775551	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATACTTTGCTGTGTTTT	NA	False	NA	-5	True	AATAAA	-18	NA	68004774	67776503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_67780040_67781352_67781445_67788033_67788127_67788829_67788919_67805035_67805144_67805867_67805925_67808930_67808993_67813248_67813328_67817212_67817336_67817436_67817512_67824663_67824775_67824866_67825051_67840100_67840274_67860322_67860388_67863248_67863388_67887134_67887275_67889511_67889597_67895755_67895826_67902922_67902973_67904620_67904704_67906393_67906500_67908355_67908429_67913992_67914038_67918456_67918546_67919858_67919937_67922206_67922335_67924362_67924529_67926394_67926507_67932065_67932194_67933471_67933542_67938330_67938405_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
transcript_102634.known	chr5	-	8069	36	FSM	ENSMUSG00000037685.16	ENSMUST00000135930.8	8069	36	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_2	10.9452813428194	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACTGGCTGAAGTTTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	68004713	67775482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_67780040_67781352_67781445_67788033_67788127_67788829_67788919_67805035_67805144_67805867_67805925_67808930_67808993_67813248_67813328_67817212_67817336_67817436_67817512_67824663_67824775_67824866_67825051_67840100_67840274_67860322_67860388_67863248_67863388_67887134_67887275_67889511_67889597_67895755_67895826_67902922_67902973_67904620_67904704_67906393_67906500_67908355_67908429_67918456_67918546_67919858_67919937_67922206_67922335_67924362_67924529_67926394_67926507_67932065_67932194_67933471_67933542_67938330_67938405_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
transcript_102638.known	chr5	-	854	7	FSM	ENSMUSG00000037685.16	ENSMUST00000113652.8	854	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	8.34166250416147	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGATTCTTAATTAAG	NA	False	NA	NA	False	AATAAA	-25	NA	68004774	67938221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_67938405_67943968_67944010_67962999_67963046_67969430_67969530_67970434_67970535_67971951_67972067_68004504
transcript_102639.known	chr5	-	808	6	FSM	ENSMUSG00000037685.16	ENSMUST00000113651.8	808	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	27.00074073058	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGATTCTTAATTAAG	NA	False	NA	NA	False	AATAAA	-25	NA	68004774	67938221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_67938405_67943968_67944010_67969430_67969530_67970434_67970535_67971951_67972067_68004504
transcript_102640.known	chr5	+	3433	17	FSM	ENSMUSG00000029208.17	ENSMUST00000087228.11	3433	17	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_8	27.9058125665604	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGATACTGGATTTTAT	NA	False	NA	NA	False	AATACA	-16	NA	69714303	69730447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69720425_69720566_69721866_69721991_69722772_69722906_69723703_69723848_69724470_69724605_69725738_69725841_69726571_69726692_69728103_69728141_69728926
transcript_102649.known	chr5	+	1769	15	FSM	ENSMUSG00000029208.17	ENSMUST00000031113.13	1769	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_8	41.9435967237247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGTGTTCTCTGTTCCTT	NA	False	NA	3	True	AATAAA	-14	NA	69714330	69729074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69722772_69722906_69723703_69723848_69724470_69724605_69725738_69725841_69726571_69726692_69728103_69728141_69728926
transcript_102654.nic	chr5	+	1924	12	ISM	ENSMUSG00000029208.17	ENSMUST00000087228.11	3433	17	-40	6235	-2	0	5prime_fragment	FALSE	canonical	3	69	junction_8	27.2175198802123	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	69714263	69724212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69720425_69720566_69721866_69721991_69722772_69722906_69723703
transcript_102656.known	chr5	+	1752	11	FSM	ENSMUSG00000029208.17	ENSMUST00000132169.8	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	34.8122105014893	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	69714295	69724212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69721866_69721991_69722772_69722906_69723703
transcript_102657.nnic	chr5	+	1655	11	NNC	ENSMUSG00000029208.17	novel	1752	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	56.5636809268987	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	69714263	69724212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69719259_69719335_69721866_69721991_69722772_69722906_69723703
transcript_102658.known	chr5	+	3091	15	FSM	ENSMUSG00000029208.17	ENSMUST00000154728.8	3091	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	33.0772133169698	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGGTGTTCTCTGTTCCT	NA	False	NA	2	True	AATAAA	-13	NA	69714265	69729073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_69714509_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69721866_69721991_69722772_69722906_69723703_69723848_69724470_69725841_69726571_69726692_69728103_69728141_69728926
transcript_10266.known	chr10	-	544	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	12818	junction_1	2119	2945	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75695378_75695520_75695694_75695894
transcript_102662.known	chr5	-	1011	7	FSM	ENSMUSG00000029209.16	ENSMUST00000173927.8	1011	7	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_3	36.2142544065486	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAACAAAAAAAA	NA	False	NA	NA	False	GATAAA	-37	NA	69749617	69733154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_69733297_69735320_69735496_69736850_69737030_69742316_69742500_69743807_69743910_69747003_69747167_69749550
transcript_102666.known	chr5	-	542	3	FSM	ENSMUSG00000049387.11	ENSMUST00000050129.6	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	6	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAATAAGTTGTTGAAAAC	NA	False	NA	NA	False	AATAAA	-15	NA	71705548	71600166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_71600613_71660793_71660857_71705515
transcript_10267.known	chr10	+	1316	7	FSM	ENSMUSG00000009092.6	ENSMUST00000217811.2	1316	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.48988969733353	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGACTCAATATGTTAGT	NA	False	NA	NA	False	NA	NA	NA	75729248	75731775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75729352_75729455_75729519_75729603_75729678_75729800_75729895_75730265_75730462_75730872_75730964_75731080
transcript_102671.known	chr5	-	3360	6	FSM	ENSMUSG00000029213.12	ENSMUST00000199767.5	3360	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	163.112966989139	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCCGTTCCATACTCCA	NA	False	NA	NA	False	NA	NA	NA	72325507	72314527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322097_72322198_72322693_72322850_72325421
transcript_102676.nnic	chr5	-	1547	5	NNC	ENSMUSG00000029213.12	novel	3895	5	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	141.390416931276	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTTGCTTGATTTC	NA	False	NA	-4	True	AATACA	-14	NA	72325504	72316353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325305
transcript_102677.known	chr5	-	3895	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAGACTCATGGGTATT	NA	False	NA	-4	True	NA	NA	NA	72325532	72313917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
transcript_102682.nic	chr5	+	5966	24	NIC	ENSMUSG00000046808.18	novel	6052	23	NA	NA	-46	0	combination_of_known_junctions	TRUE	non_canonical	0	0	junction_23	25.1562978093101	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTCACTGGAAACTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	72360625	72456104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_72360907_72384974_72385302_72387619_72387815_72396440_72396646_72399378_72399465_72403046_72403154_72403434_72403567_72404159_72404288_72404395_72404649_72412253_72412490_72418266_72418456_72421345_72421956_72423313_72423418_72424749_72424877_72426614_72426800_72434421_72434729_72436727_72436805_72437386_72437513_72439447_72439649_72445485_72445567_72446660_72446766_72452984_72453173_72454270_72454965_72455082
transcript_102684.known	chr5	+	6052	23	FSM	ENSMUSG00000046808.18	ENSMUST00000126664.8	6052	23	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	13.360930461982	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCATTACTCCTGTAACT	NA	False	NA	24	True	AATAAA	-29	NA	72360671	72456118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_72360907_72384974_72385302_72387619_72387815_72396440_72396646_72399378_72399465_72403046_72403154_72403434_72403567_72404159_72404288_72404395_72404649_72412253_72412490_72418266_72418456_72421345_72421956_72423313_72423418_72424749_72424877_72426614_72426800_72434421_72434729_72436727_72436805_72437386_72437513_72439447_72439649_72445485_72445567_72446660_72446766_72452984_72453173_72454270
transcript_102687.known	chr5	+	761	3	FSM	ENSMUSG00000046808.18	ENSMUST00000169617.3	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGGGGTGTTCCCGAG	NA	False	NA	NA	False	NA	NA	NA	72360671	72387818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_72360907_72384974_72385302_72387619
transcript_102688.known	chr5	-	3712	23	FSM	ENSMUSG00000072889.10	ENSMUST00000087216.12	3712	23	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_22	12.1822421907212	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTGATAAAGGATATTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	72717027	72670643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_72671675_72673554_72673609_72674368_72674456_72675537_72675643_72679490_72679561_72680851_72681019_72681429_72681571_72681989_72682012_72685501_72685594_72686354_72686515_72686726_72686848_72690387_72690479_72694708_72694832_72695492_72695618_72696948_72697064_72697636_72697738_72697834_72697997_72698196_72698376_72707634_72707766_72709985_72710096_72713514_72713689_72716356_72716612_72716931
transcript_102691.known	chr5	-	798	5	FSM	ENSMUSG00000072889.10	ENSMUST00000146761.2	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_4	15.8587515271537	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAAGTTGTATTGTTGGA	NA	False	NA	NA	False	AATAAA	-25	NA	72716991	72707566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_72707766_72709985_72710096_72713514_72713689_72716356_72716612_72716931
transcript_102692.known	chr5	+	4206	6	FSM	ENSMUSG00000067219.10	ENSMUST00000087212.8	4206	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTATTCTGTTTTGA	2039	False	NA	NA	False	NA	NA	NA	72805137	72828421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_72805277_72816024_72816292_72818098_72818156_72820876_72820968_72824118_72824280_72824930
transcript_102693.known	chr5	-	2659	19	FSM	ENSMUSG00000029217.17	ENSMUST00000071944.13	2659	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	3.16471674858358	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTTGTTGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	73025787	72913058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_72913723_72914705_72914864_72914946_72915066_72917685_72917751_72920906_72921124_72921466_72921639_72922854_72922930_72926047_72926182_72928489_72928570_72931173_72931229_72936763_72936830_72939345_72939519_72941060_72941102_72943259_72943389_72944080_72944163_72946482_72946588_72980798_72980985_72982386_72982474_73025736
transcript_102695.known	chr5	+	4828	9	FSM	ENSMUSG00000036087.19	ENSMUST00000143829.5	4828	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_7	103.604717556683	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTATTATTAAATCTATA	NA	False	NA	-4	True	AATAAA	-15	NA	73071711	73136154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_73072357_73098634_73098784_73105904_73106070_73112669_73112832_73114635_73114996_73115491_73115630_73123146_73123225_73131873_73132190_73133339
transcript_102699.known	chr5	+	4833	8	FSM	ENSMUSG00000036087.19	ENSMUST00000144843.8	4833	8	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_4	22.378925946761	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATCTTCCAAGTGTTT	NA	False	NA	14	True	AATAAA	-33	NA	73071646	73136172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_73072357_73098634_73098784_73105904_73106070_73112669_73112832_73114635_73114996_73115491_73115630_73131873_73132190_73133339
transcript_1027.known	chr1	-	3779	15	FSM	ENSMUSG00000026121.14	ENSMUST00000191677.6	3779	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	3.99042220670383	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGACTCAAACCCACT	NA	False	NA	NA	False	AATAAA	-35	NA	36597430	36587719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36589450_36589586_36589658_36589748_36589910_36590806_36590920_36591007_36591231_36591332_36591478_36591799_36591976_36592059_36592212_36592304_36592422_36592551_36592649_36592796_36592896_36593006_36593070_36593332_36593482_36595012_36595162_36597096
transcript_102704.nic	chr5	+	1564	5	ISM	ENSMUSG00000036087.19	ENSMUST00000144843.8	4833	8	-23	21182	-23	233	5prime_fragment	FALSE	canonical	3	204	junction_4	26.3379479079142	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGGTAAAACAGCAGAGC	NA	False	NA	NA	False	NA	NA	NA	73071623	73114990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_73072357_73098634_73098784_73105904_73106070_73112669_73112832_73114635
transcript_102706.known	chr5	+	4070	1	FSM	ENSMUSG00000036087.19	ENSMUST00000183284.3	4070	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAGAACAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	73071758	73075828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_73071800_73075800
transcript_102708.nic	chr5	+	1517	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	-69	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450057	73471284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
transcript_102713.known	chr5	+	1523	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73450134	73471412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
transcript_102714.known	chr5	+	800	8	FSM	ENSMUSG00000029152.14	ENSMUST00000202250.4	800	8	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	366.22843323003	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTTATGGTCCAACGT	NA	False	NA	NA	False	AATGAA	-5	NA	73450149	73464123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
transcript_102717.known	chr5	+	1139	8	FSM	ENSMUSG00000029152.14	ENSMUST00000200935.4	1139	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	334.9632937551	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450237	73471284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73470785
transcript_102718.known	chr5	+	1311	8	FSM	ENSMUSG00000029152.14	ENSMUST00000071081.13	1311	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	338.614704889417	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGGCTTTGTTTGAA	NA	False	NA	31	True	AATAAA	-32	NA	73450126	73471300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464142_73470785
transcript_102720.known	chr5	+	3354	7	FSM	ENSMUSG00000029152.14	ENSMUST00000166823.5	3354	7	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	115.10683443364	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGTTGCTTGAAAGATT	NA	False	NA	16	True	AATAAA	-27	NA	73450135	73466708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
transcript_102728.known	chr5	-	2554	7	FSM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	41.8107508768844	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGCTGGCTTTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-35	NA	73496335	73479541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
transcript_10273.known	chr10	-	1660	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_7	283.203990084886	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTAGCATAAAACTG	6861	False	NA	-2	True	AATAAA	-20	NA	75757451	75732602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
transcript_102735.nnic	chr5	+	4213	12	NNC	ENSMUSG00000051674.16	novel	4116	11	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	50.51094309059	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	NA	False	NA	15	True	AATAAA	-26	NA	73648357	73718133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_73648535_73668228_73668300_73668469_73668510_73677087_73677167_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
transcript_102738.known	chr5	+	4116	11	FSM	ENSMUSG00000051674.16	ENSMUST00000063882.12	4116	11	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	17.7721692542019	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	NA	False	NA	15	True	AATAAA	-26	NA	73648375	73718133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_73648535_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
transcript_10274.known	chr10	-	1622	9	FSM	ENSMUSG00000000902.14	ENSMUST00000121304.2	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	799	junction_7	118.779206934547	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTCTGTGCAGTAGCA	6864	False	NA	-10	True	AATAAA	-12	NA	75757448	75732610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
transcript_102740.nic	chr5	+	4128	11	NIC	ENSMUSG00000051674.16	novel	1243	8	NA	NA	-8270	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	34.4034881952397	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	8072	False	NA	15	True	AATAAA	-26	NA	73659940	73718133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_73660112_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
transcript_102746.nnic	chr5	-	3102	8	NNC	ENSMUSG00000029156.12	novel	3786	6	NA	NA	-18600	-857	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	30.3052497641136	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAACCCTATATTACAAAG	NA	False	NA	NA	False	AATAAA	-18	NA	73823733	73790948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73817744_73817831_73823363_73823482_73823648
transcript_102749.known	chr5	-	3786	6	FSM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	18.2756668824971	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAGTTTCTTCGTGACTT	NA	False	NA	NA	False	AATAAA	-17	NA	73805133	73790091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73805017
transcript_102753.known	chr5	+	848	2	FSM	ENSMUSG00000106968.2	ENSMUST00000202711.2	848	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGAGTCCCCC	NA	False	NA	NA	False	AATAAA	-4	NA	74103723	74105719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_74103968_74105115
transcript_102756.known	chr5	-	4557	9	FSM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_8	42.7755771439732	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTTGGCTCCTATTT	NA	False	NA	NA	False	ATTAAA	-26	NA	74229092	74159386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
transcript_102762.nic	chr5	-	3171	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	-6	-1312	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGCAGCTAATTTATTA	NA	False	NA	-1	True	ATTAAA	-17	NA	74226415	74160698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
transcript_102765.nic	chr5	-	2501	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	-6	1091	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCTTGGTTTTCCTACA	NA	False	NA	-19	True	ATTAAA	-29	NA	74226415	74161368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
transcript_102768.known	chr5	-	452	4	FSM	ENSMUSG00000054814.15	ENSMUST00000145016.3	452	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	64.8194072447099	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACTATTGCGGACATCC	NA	False	NA	NA	False	NA	NA	NA	74226409	74189976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_74190032_74192964_74193179_74197693_74197775_74226307
transcript_102770.known	chr5	+	575	3	FSM	ENSMUSG00000106943.3	ENSMUST00000120364.2	575	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	23.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253737	74254998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_74253801_74254018_74254081_74254548
transcript_102771.known	chr5	+	1036	2	FSM	ENSMUSG00000106943.3	ENSMUST00000117249.2	1036	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTTCACTTGTTCT	NA	False	NA	18	True	AATAAA	-20	NA	74253743	74254997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_74253801_74254018
transcript_102773.known	chr5	+	121	1	FSM	ENSMUSG00000093355.3	ENSMUST00000175614.3	121	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAAAAGCTTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	74254190	74254311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_74254200_74254300
transcript_102774.known	chr5	+	1812	4	FSM	ENSMUSG00000049907.9	ENSMUST00000051937.9	1812	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.4142135623731	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGACTGGGTCTTTATT	NA	False	NA	21	True	AATAAA	-23	NA	74355946	74360142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_74356252_74356763_74356821_74357927_74358005_74358769
transcript_102776.known	chr5	-	3672	9	FSM	ENSMUSG00000062110.15	ENSMUST00000072857.13	3672	9	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	6.19979838381862	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCCATGTGACTCAGAAC	NA	False	NA	NA	False	AATAAA	-15	NA	74692410	74365476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810_74642939_74680144_74680314_74691442
transcript_102781.known	chr5	-	3834	5	FSM	ENSMUSG00000062110.15	ENSMUST00000151474.3	3834	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	25.3229145242012	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTAGCATTGGAGGC	NA	False	NA	NA	False	AGTAAA	-17	NA	74692420	74616920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_74619304_74623220_74623397_74642810_74642939_74680144_74680314_74691442
transcript_102785.known	chr5	-	2564	11	FSM	ENSMUSG00000029228.16	ENSMUST00000117388.8	2564	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	3.95474398665704	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTAGAGGATTTCTT	NA	False	NA	1	True	AATAAA	-19	NA	74863573	74757764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_74758072_74758436_74758596_74766697_74766924_74768397_74768567_74771337_74771473_74780634_74781007_74784142_74784346_74788008_74788162_74788780_74789023_74846056_74846534_74863452
transcript_102787.nic	chr5	+	2178	19	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_9	215.964760499897	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696136	74756806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_102790.nic	chr5	+	2131	18	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-34	0	combination_of_known_junctions	TRUE	canonical	3	110	junction_9	206.218767164378	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696075	74756806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_102793.known	chr5	+	4769	18	FSM	ENSMUSG00000029227.16	ENSMUST00000113536.8	4769	18	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_9	161.909389842069	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTCATTACCCTGACTGC	NA	False	NA	23	True	AATAAA	-32	NA	74696131	74759461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_102798.known	chr5	+	4673	17	FSM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_9	134.520909155417	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATGAAGTTTGGTCATTA	NA	False	NA	13	True	AATAAA	-22	NA	74696109	74759451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_102804.known	chr5	+	1969	16	FSM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_11	150.805393360671	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696141	74756806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_102813.known	chr5	-	9699	6	FSM	ENSMUSG00000029229.9	ENSMUST00000075452.7	9699	6	0	0	0	0	multi-exon	FALSE	canonical	3	625	junction_4	34.4290574950869	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTAGTTTGGGGTTTTT	NA	False	NA	NA	False	AATAAA	-5	NA	75205435	75158648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_75167425_75171891_75171952_75172113_75172171_75187728_75187885_75188021_75188077_75204840
transcript_102817.known	chr5	-	521	5	FSM	ENSMUSG00000029229.9	ENSMUST00000162397.3	521	5	0	0	0	0	multi-exon	FALSE	canonical	3	625	junction_3	25.9855729203726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGATCTTATTCTTTCC	NA	False	NA	NA	False	ATTAAA	-16	NA	75204982	75171840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_75171952_75172113_75172171_75187728_75187885_75188021_75188077_75204840
transcript_102819.known	chr5	+	1665	2	FSM	ENSMUSG00000035946.8	ENSMUST00000040477.4	1665	2	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTACTTGTCCTTATCCCCC	NA	False	NA	NA	False	AATAAA	-30	NA	75236261	75238554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_75236999_75237626
transcript_102823.known	chr5	+	5214	21	FSM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_9	204.916348786523	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTTTCTGTTTGTTTT	766	False	NA	14	True	NA	NA	NA	75735614	75817382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
transcript_10284.known	chr10	-	1793	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	-3	True	ATTAAA	-17	NA	75768309	75759055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
transcript_102840.known	chr5	+	5241	21	FSM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_9	132.566766197264	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTTTCTGTTTGTTTT	727	False	NA	14	True	NA	NA	NA	75735575	75817382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
transcript_102847.known	chr5	+	1747	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCTGGACTGGGTAACAT	NA	False	NA	15	True	AATAAA	-27	NA	76288117	76303326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
transcript_102852.known	chr5	+	2220	4	FSM	ENSMUSG00000029233.16	ENSMUST00000138699.8	2220	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	3.55902608401044	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAGAAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	76288117	76299362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599
transcript_102856.known	chr5	+	1897	6	FSM	ENSMUSG00000029234.14	ENSMUST00000031144.14	1897	6	0	0	0	0	multi-exon	FALSE	canonical	3	1062	junction_3	75.4808585006821	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTCCTCGTGTGTTA	536	False	NA	7	True	AATAAA	-15	NA	76331726	76357092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_76332200_76347191_76347418_76351953_76352130_76352483_76352664_76355648_76355755_76356356
transcript_102864.known	chr5	-	2473	18	FSM	ENSMUSG00000029238.12	ENSMUST00000202857.4	2473	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_11	13.9447749140975	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	76452601	76382963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402289_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452501
transcript_102872.known	chr5	-	2287	3	FSM	ENSMUSG00000029238.12	ENSMUST00000201052.2	2287	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	14	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAAAAGAAATAAGCT	NA	False	NA	NA	False	AGTAAA	-27	NA	76452619	76419800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_76421891_76451270_76451350_76452501
transcript_102873.known	chr5	+	652	1	FSM	ENSMUSG00000098449.2	ENSMUST00000185173.2	652	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCCTGTCTACAAGGT	NA	False	NA	NA	False	AATAAA	-23	NA	76452722	76453374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_76452700_76453400
transcript_102875.known	chr5	-	1181	6	FSM	ENSMUSG00000029235.15	ENSMUST00000031145.7	1181	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	18.0554700852678	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGTGCACCATGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76479003	76459973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_76460446_76465647_76465857_76466973_76467118_76472152_76472244_76472839_76472961_76478859
transcript_102879.known	chr5	+	3371	20	FSM	ENSMUSG00000036435.14	ENSMUST00000113493.8	3371	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.1786811310178	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTTGATAATATTCTTA	NA	False	NA	8	True	AATAAA	-18	NA	76677169	76718132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76688593_76688615_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
transcript_102882.known	chr5	+	3371	19	FSM	ENSMUSG00000036435.14	ENSMUST00000087133.11	3371	19	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_10	33.5248203611431	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTCTTAAGCCTTATA	NA	False	NA	17	True	AATAAA	-27	NA	76677157	76718141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
transcript_102885.known	chr5	+	3272	18	FSM	ENSMUSG00000036435.14	ENSMUST00000049469.13	3272	18	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	35.7889816992977	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGATAATATTCTTAAG	NA	False	NA	10	True	AATAAA	-20	NA	76677204	76718134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
transcript_102891.nic	chr5	+	2552	17	ISM	ENSMUSG00000036435.14	ENSMUST00000087133.11	3371	19	-6	3091	-6	0	5prime_fragment	FALSE	canonical	3	86	junction_10	34.8881583599651	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGTTTTCATCAGAATAA	NA	False	NA	NA	False	AATAAA	-40	NA	76677151	76715050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803
transcript_102904.known	chr5	+	3781	4	FSM	ENSMUSG00000036435.14	ENSMUST00000137018.8	3781	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	9.03081145609604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGACAAAGAAGATAGAG	NA	False	NA	NA	False	NA	NA	NA	76677204	76688955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544
transcript_102907.known	chr5	+	5537	26	FSM	ENSMUSG00000036403.16	ENSMUST00000121979.8	5537	26	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_14	5.86433286913354	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGGAAGGTCTTGTAGTAA	NA	False	NA	NA	False	AATAAA	-21	NA	76736547	76794313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_76736772_76739561_76739719_76741038_76741230_76741869_76742038_76743239_76743382_76745203_76745289_76749233_76749363_76750983_76751200_76754568_76754635_76757477_76757617_76759496_76759721_76763484_76763638_76764649_76764803_76769130_76769209_76772473_76772626_76778511_76778628_76778699_76778855_76779271_76779328_76780005_76780175_76781519_76781631_76781998_76782185_76784708_76784919_76785910_76786114_76786768_76786874_76788728_76788843_76792478
transcript_102913.nic	chr5	+	2060	13	ISM	ENSMUSG00000036403.16	ENSMUST00000130651.2	5629	24	-10	27953	-10	-27953	5prime_fragment	FALSE	canonical	3	26	junction_1	4.68078222332787	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAGTGCAGGTTACAG	NA	False	NA	NA	False	NA	NA	NA	76736534	76764802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_76736772_76739561_76739719_76741038_76741230_76741869_76742038_76743239_76743382_76745203_76745289_76749233_76749363_76750983_76751200_76754568_76754635_76757477_76757617_76759496_76759721_76763484_76763638_76764649
transcript_102914.nic	chr5	+	1902	12	ISM	ENSMUSG00000036403.16	ENSMUST00000130651.2	5629	24	-4	29117	-4	-29117	5prime_fragment	FALSE	canonical	3	26	junction_1	4.80185914408882	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACGTTGCTTCTAATTA	NA	False	NA	NA	False	NA	NA	NA	76736540	76763638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_76736772_76739561_76739719_76741038_76741230_76741869_76742038_76743239_76743382_76745203_76745289_76749233_76749363_76750983_76751200_76754568_76754635_76757477_76757617_76759496_76759721_76763484
transcript_102926.known	chr5	-	3694	16	FSM	ENSMUSG00000055923.17	ENSMUST00000120963.8	3694	16	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_15	18.6828501275605	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGGTCCTTTCCA	NA	False	NA	2	True	ATTAAA	-21	NA	77053361	77023781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
transcript_10293.known	chr10	-	2288	8	FSM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	14.5349683908307	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5056	False	NA	-3	True	ATTAAA	-17	NA	75768336	75759055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
transcript_102933.known	chr5	-	3981	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATGTGTGCATTTTAA	NA	False	NA	49	True	AATAAA	-3	NA	77099425	77061122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
transcript_102938.known	chr5	+	1862	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGGGATCTGACCCCAT	347	False	NA	9	True	NA	NA	NA	77099214	77115160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
transcript_102939.known	chr5	+	2345	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	1323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	327	False	NA	19	True	ATTAAA	-22	NA	77099194	77115356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
transcript_102943.known	chr5	-	2057	10	FSM	ENSMUSG00000029246.15	ENSMUST00000031158.9	2057	10	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_5	49.1347353938354	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTACATGGAATGCAGCAT	NA	False	NA	-15	True	ATTAAA	-20	NA	77099012	77062890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
transcript_102944.known	chr5	+	2482	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	0	0	0	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	2553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	286	False	NA	15	True	ATTAAA	-18	NA	77099153	77115352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
transcript_102954.known	chr5	+	3625	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCGGTATTGGCATTTT	NA	False	NA	28	True	AATAAA	-36	NA	77122529	77147784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
transcript_102961.nic	chr5	+	1738	17	ISM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	-20	3249	-20	-801	5prime_fragment	FALSE	canonical	3	245	junction_6	30.1931283572935	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGTAAGACTTTGAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	77122509	77144535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498
transcript_102962.nic	chr5	+	1701	16	ISM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	-20	4022	-20	769	5prime_fragment	FALSE	canonical	3	245	junction_6	30.8116860947271	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATGTTTTGCTAATTCAA	NA	False	NA	NA	False	NA	NA	NA	77122509	77143762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624
transcript_102969.nic	chr5	+	886	8	ISM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	-20	15546	-20	1677	5prime_fragment	FALSE	canonical	3	245	junction_6	36.0753180364161	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGAGCTCTCTGGAATTT	NA	False	NA	NA	False	NA	NA	NA	77122509	77132238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180
transcript_102971.known	chr5	-	631	4	FSM	ENSMUSG00000053030.12	ENSMUST00000065216.11	631	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.63299316185545	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCTCGTCTTTTCTGTTG	NA	False	NA	NA	False	AATAAA	-17	NA	77359318	77352953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_77353273_77354775_77354886_77357579_77357642_77359178
transcript_102981.known	chr5	+	7004	4	FSM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_1	62.4731053245226	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGACCTTTGTTTATTATT	3696	False	NA	14	True	AATAAA	-14	NA	77413337	77434279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_77413636_77415778_77416671_77423080_77423165_77428549
transcript_102985.known	chr5	+	6924	4	FSM	ENSMUSG00000029249.16	ENSMUST00000113449.2	6924	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	347.74543690592	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGACCTTTGTTTATTATT	4401	False	NA	14	True	AATAAA	-14	NA	77414042	77434279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_77414261_77415778_77416671_77423080_77423165_77428549
transcript_102990.nic	chr5	+	1253	2	ISM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	-95	17641	-95	-17641	5prime_fragment	FALSE	canonical	3	740	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTACGTTCAGCACGTGC	3601	False	NA	NA	False	NA	NA	NA	77413242	77416638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_77413636_77415778
transcript_102992.known	chr5	-	2288	7	FSM	ENSMUSG00000036285.11	ENSMUST00000047860.9	2288	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	16.2138486760204	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTCCATGTATCTGTGA	NA	False	NA	69	True	AATAAA	-14	NA	77457931	77442028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_77442404_77444932_77445051_77447504_77447622_77452032_77452165_77454120_77454324_77455399_77455565_77456753
transcript_102995.nnic	chr5	-	2524	6	NIC	ENSMUSG00000036285.11	novel	2288	7	NA	NA	-368	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_3	53.9013914477168	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTCCATGTATCTGTGA	NA	False	NA	69	True	AATAAA	-14	NA	77458299	77442028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_77442404_77444932_77445051_77447504_77447622_77454120_77454324_77455399_77455565_77456753
transcript_102996.nnic	chr5	-	2455	6	NIC	ENSMUSG00000036285.11	novel	2288	7	NA	NA	-368	-69	combination_of_known_splicesites	FALSE	canonical	3	19	junction_3	53.9013914477168	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAGTTTTTTAACTATTT	NA	False	NA	0	True	AATAAA	-36	NA	77458299	77442097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_77442404_77444932_77445051_77447504_77447622_77454120_77454324_77455399_77455565_77456753
transcript_1030.known	chr1	+	865	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	0	0	0	0	multi-exon	FALSE	canonical	3	7132	junction_3	70.6588045940962	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCTAAAAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	36730564	36732762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
transcript_103004.known	chr5	-	2815	3	FSM	ENSMUSG00000036285.11	ENSMUST00000150722.2	2815	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	77457906	77452826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_77454324_77455399_77455565_77456753
transcript_103010.known	chr5	+	4145	25	FSM	ENSMUSG00000029250.6	ENSMUST00000031167.6	4145	25	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_9	39.992360381564	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTGTTATCTTTGATT	NA	False	NA	16	True	AATAAA	-16	NA	77457993	77497171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77483480_77483680_77484273_77484443_77487167_77487265_77488221_77488317_77490376_77490628_77490707_77490798_77491016_77491125_77492638_77492753_77493097_77493259_77496069_77496266_77496926
transcript_103016.nic	chr5	+	1121	8	ISM	ENSMUSG00000029250.6	ENSMUST00000031167.6	4145	25	347	23483	3	-1267	5prime_fragment	FALSE	canonical	3	411	junction_4	39.8420350271173	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATTAAATATGCAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	77458340	77473688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585
transcript_103017.known	chr5	-	1116	5	FSM	ENSMUSG00000036256.14	ENSMUST00000046746.10	1116	5	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_4	2.29128784747792	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAATGACAATCA	NA	False	NA	NA	False	AATAAA	-21	NA	77555888	77497086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_77497347_77499074_77499202_77499759_77499877_77503408_77503519_77555386
transcript_103022.known	chr5	-	3192	19	FSM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_10	17.8879399334224	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCATCTTGTCTGTGGTG	NA	False	NA	-6	True	ATTAAA	-17	NA	86213442	86159882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
transcript_103023.known	chr5	-	6590	33	FSM	ENSMUSG00000035898.14	ENSMUST00000039373.14	6590	33	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_13	11.1589632554956	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTCTTGAGTTGCAACT	7088	False	NA	-4	True	NA	NA	NA	86320662	86257145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_86260648_86265882_86265978_86267191_86267280_86268386_86268515_86270163_86270358_86272169_86272288_86274327_86274400_86275558_86275629_86276534_86276599_86276686_86276739_86279071_86279201_86280300_86280382_86280476_86280567_86282832_86282939_86284167_86284350_86285675_86285754_86288214_86288296_86289406_86289486_86290263_86290332_86292193_86292338_86294933_86295001_86295663_86295741_86296727_86296791_86297868_86297973_86300425_86300550_86300684_86300808_86302212_86302294_86307062_86307175_86308137_86308233_86311937_86311967_86312555_86312651_86318413_86318477_86320526
transcript_103029.nic	chr5	+	3340	18	NIC	ENSMUSG00000035851.15	novel	2960	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_14	69.4558185225946	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTGTATTTCCTTGT	NA	False	NA	11	True	AATAAA	-19	NA	86952078	86984516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_86952451_86957163_86957200_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979631_86979696_86979806_86979870_86981366_86981502_86983542
transcript_103030.nic	chr5	+	3316	18	NIC	ENSMUSG00000035851.15	novel	3269	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	100	junction_1	58.4142230393181	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTGTATTTCCTTGT	NA	False	NA	11	True	AATAAA	-19	NA	86952078	86984516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_86952451_86957163_86957200_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
transcript_103031.known	chr5	+	2960	17	FSM	ENSMUSG00000035851.15	ENSMUST00000038384.8	2960	17	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_13	59.5315042645489	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTGTATTTCCTTGT	NA	False	NA	11	True	AATAAA	-19	NA	86952422	86984516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_86952451_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979631_86979696_86979806_86979870_86981366_86981502_86983542
transcript_103032.known	chr5	+	3269	17	FSM	ENSMUSG00000035851.15	ENSMUST00000120498.8	3269	17	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	43.5918122329182	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	13	True	AATAAA	-21	NA	86952091	86984518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_86952451_86963487_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
transcript_103042.nic	chr5	+	627	4	ISM	ENSMUSG00000035851.15	ENSMUST00000156363.8	4346	17	-276	20079	-1	6835	5prime_fragment	FALSE	canonical	3	100	junction_1	36.5786823163438	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAGTTAGTACAAAAGGA	NA	False	NA	NA	False	AATAAA	-2	NA	86952078	86964439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_86952451_86957163_86957200_86963487_86963590_86964322
transcript_103043.nic	chr5	+	605	3	ISM	ENSMUSG00000035851.15	ENSMUST00000119339.8	3222	16	-15	20074	-15	6835	5prime_fragment	FALSE	canonical	3	145	junction_1	19.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAGTTAGTACAAAAGGA	NA	False	NA	NA	False	AATAAA	-2	NA	86952064	86964439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_86952451_86963487_86963590_86964322
transcript_103044.nic	chr5	+	590	3	ISM	ENSMUSG00000035851.15	ENSMUST00000156363.8	4346	17	-357	20930	-82	5984	5prime_fragment	FALSE	canonical	3	100	junction_1	7.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAGAGTTCTTTTAGTTG	NA	False	NA	NA	False	GATAAA	-13	NA	86951997	86963588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_86952451_86957163_86957200_86963487
transcript_103046.nic	chr5	+	570	2	ISM	ENSMUSG00000035851.15	ENSMUST00000119339.8	3222	16	-98	20925	-98	5984	5prime_fragment	FALSE	canonical	3	145	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAGAGTTCTTTTAGTTG	NA	False	NA	NA	False	GATAAA	-13	NA	86951981	86963588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_86952451_86963487
transcript_103048.known	chr5	+	1246	4	FSM	ENSMUSG00000035851.15	ENSMUST00000123625.2	1246	4	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_2	16.779617264871	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTGTATTTCCTTGT	NA	False	NA	11	True	AATAAA	-19	NA	86979621	86984516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_86979696_86979806_86979870_86981366_86981502_86983542
transcript_103049.known	chr5	+	1629	1	FSM	ENSMUSG00000070697.5	ENSMUST00000090413.6	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTTTGTAATACCTATT	NA	False	NA	20	True	AATAAA	-22	NA	88702320	88703949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_88702300_88703900
transcript_103052.known	chr5	+	3536	18	FSM	ENSMUSG00000029291.12	ENSMUST00000198965.5	3536	18	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_11	15.8934601684016	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTTGGTTGTCTT	NA	False	NA	11	True	AATAAA	-15	NA	88712898	88799251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_88713336_88762799_88762974_88764320_88764439_88765193_88765296_88769159_88769284_88775079_88775142_88775883_88775950_88778395_88778466_88780297_88780391_88783050_88783135_88785050_88785219_88786839_88786938_88790787_88790908_88791926_88792024_88793395_88793461_88795077_88795106_88796114_88796184_88797690
transcript_103058.nic	chr5	+	1233	9	ISM	ENSMUSG00000029291.12	ENSMUST00000196894.5	3703	13	-37	10214	-37	-8446	5prime_fragment	FALSE	canonical	3	98	junction_8	15.3780484782693	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAACGAGTTAAAGAAGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	88712861	88780340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_88713336_88762799_88762974_88764320_88764439_88765193_88765296_88769159_88769284_88775079_88775142_88775883_88775950_88778395_88778466_88780297
transcript_103068.known	chr5	-	2286	10	FSM	ENSMUSG00000044221.15	ENSMUST00000113234.8	2286	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	165.873073593064	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATCAAAGTTCTGTATA	NA	False	NA	-8	True	AATAAA	-26	NA	88823525	88807316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823353
transcript_10307.known	chr10	-	714	7	FSM	ENSMUSG00000050157.7	ENSMUST00000219979.2	714	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	8.23441288469042	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCCCCCCCCCACTC	4977	False	NA	NA	False	NA	NA	NA	75776445	75774009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775546_75775673_75775764_75775852_75776227_75776255_75776397
transcript_103070.known	chr5	-	2538	10	FSM	ENSMUSG00000044221.15	ENSMUST00000078945.12	2538	10	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_9	46.2793450448229	1084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTATATTTTCTTTAC	NA	False	NA	2	True	AATAAA	-36	NA	88824030	88807306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823616
transcript_103082.known	chr5	+	2705	6	FSM	ENSMUSG00000006262.16	ENSMUST00000006424.8	2705	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	7.75628777186613	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGGTAGGCAATCCTG	NA	False	NA	NA	False	AATAAA	-17	NA	88868729	88905848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_88868981_88891162_88891330_88892915_88893010_88897383_88897518_88901018_88901183_88903953
transcript_103086.known	chr5	+	3078	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTTTAAAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	88912854	88931140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
transcript_103094.known	chr5	-	1333	6	FSM	ENSMUSG00000035505.15	ENSMUST00000048363.10	1333	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	53.4714877294432	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371860	90362582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_90363035_90365375_90365484_90366770_90366893_90367218_90367383_90370089_90370191_90371474
transcript_103095.known	chr5	-	1307	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371831	90362582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
transcript_103103.known	chr5	-	10458	34	FSM	ENSMUSG00000055204.16	ENSMUST00000014421.15	10458	34	0	0	0	0	multi-exon	TRUE	canonical	1	25	junction_19	38.1218865865083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTGCAGGTCTTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	90514436	90375024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90430709_90431463_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
transcript_103104.nic	chr5	-	4132	25	ISM	ENSMUSG00000055204.16	ENSMUST00000081914.13	8057	33	10	25325	10	-434	5prime_fragment	FALSE	canonical	1	45	junction_24	31.0563723555873	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACTCCAGAAAATGTTCAA	NA	False	NA	NA	False	AATAAA	-2	NA	90514077	90401648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
transcript_103110.nic	chr5	-	4246	24	ISM	ENSMUSG00000055204.16	ENSMUST00000081914.13	8057	33	-355	26273	-6	-1382	5prime_fragment	FALSE	canonical	1	45	junction_23	31.4708134356053	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAGAACAAAGAAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	90514442	90402596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
transcript_103118.known	chr5	+	2159	8	FSM	ENSMUSG00000029376.9	ENSMUST00000071652.6	2159	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.03015750727543	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGCTATATTCTTTTAT	4518	False	NA	NA	False	AATAAA	-18	NA	91079138	91169227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_91079293_91094648_91094834_91096681_91096805_91107563_91107717_91109148_91109257_91122181_91122275_91148352_91148479_91168010
transcript_103119.known	chr5	+	5068	4	FSM	ENSMUSG00000034981.10	ENSMUST00000040576.10	5068	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGTCGCTCTGATCTTG	NA	False	NA	NA	False	AATAAA	-20	NA	91665473	91774753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_91665817_91741676_91742361_91760856_91760936_91770791
transcript_103126.known	chr5	-	1967	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTTTATGGATGAATG	1335	False	NA	NA	False	TATAAA	-18	NA	92110927	92096762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
transcript_103130.known	chr5	+	3151	5	FSM	ENSMUSG00000102644.6	ENSMUST00000191860.2	3151	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	9.73075022801428	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTGGGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	92111191	92119925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_92111382_92111541_92111645_92112954_92113164_92114310_92114434_92117399
transcript_103131.known	chr5	+	650	5	FSM	ENSMUSG00000102644.6	ENSMUST00000192939.6	650	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	9.73075022801428	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCACTGAGGAAGACAAT	NA	False	NA	NA	False	AAAACA	-8	NA	92110748	92117525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_92110838_92111541_92111645_92112954_92113164_92114310_92114434_92117399
transcript_103133.nnic	chr5	+	2955	4	NIC	ENSMUSG00000102644.6	novel	650	5	NA	NA	-8	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	11.0453610171873	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTGGGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	92110740	92119925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_92110838_92112954_92113164_92114310_92114434_92117399
transcript_103134.known	chr5	+	1996	4	FSM	ENSMUSG00000102644.6	ENSMUST00000192174.6	1996	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	7.48331477354788	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAGATAAAAGGAAAGTC	NA	False	NA	NA	False	NA	NA	NA	92110762	92118444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_92111382_92112954_92113164_92114310_92114434_92117399
transcript_103137.nnic	chr5	+	622	3	NNC	ENSMUSG00000102644.6	novel	1337	5	NA	NA	-8	-594	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATAAGAACAGAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	92110740	92113863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_92110838_92112954_92113316_92113699
transcript_103138.known	chr5	-	1046	1	FSM	ENSMUSG00000029397.16	ENSMUST00000200905.2	1046	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAGAAAAAAAAAAAAA	1677	False	NA	NA	False	NA	NA	NA	92110585	92109539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92109500_92110600
transcript_10314.known	chr10	+	1488	5	FSM	ENSMUSG00000049422.8	ENSMUST00000219839.2	1488	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7283.8894829617	6250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	4503	False	NA	23	True	ATTAAA	-20	NA	75768963	75773581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75769333_75771248_75771839_75772071_75772280_75773140_75773289_75773408
transcript_103140.known	chr5	-	4066	14	FSM	ENSMUSG00000029403.15	ENSMUST00000086978.12	4066	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	2.30255839186089	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCCTCTTCCTTTTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	92190901	92153932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92155994_92156823_92156913_92164980_92165088_92165240_92165365_92167237_92167332_92167876_92168173_92169961_92170092_92172794_92172884_92178841_92178988_92180982_92181096_92181437_92181617_92185026_92185222_92187096_92187296_92190657
transcript_103143.known	chr5	-	2716	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_11	559.822935407495	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	-9	True	AGTAAA	-17	NA	92231372	92201575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
transcript_103144.known	chr5	-	1884	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231517	92202358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
transcript_103153.known	chr5	-	4232	11	FSM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_10	456.056180749697	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTAATCTGAAGTTATA	NA	False	NA	0	True	AATAAA	-33	NA	92231416	92200004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
transcript_103154.known	chr5	-	4182	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	0	0	0	0	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92231578	92200022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
transcript_103194.known	chr5	+	3898	24	FSM	ENSMUSG00000029407.11	ENSMUST00000031355.10	3898	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	100.480471444838	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATCTCTGTCATTGTTC	NA	False	NA	10	True	AATAAA	-18	NA	92285796	92350654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
transcript_103201.nic	chr5	+	1929	15	ISM	ENSMUSG00000029407.11	ENSMUST00000031355.10	3898	24	-87	14979	-87	3761	5prime_fragment	TRUE	canonical	0	0	junction_12	119.991432517289	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGAGGGTAGGGTGGC	NA	False	NA	7	True	NA	NA	NA	92285709	92335675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556
transcript_103202.known	chr5	+	3549	13	FSM	ENSMUSG00000029407.11	ENSMUST00000201380.2	3549	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	129.019674425604	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACCAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	92285805	92331914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756
transcript_103203.known	chr5	+	2427	12	FSM	ENSMUSG00000029407.11	ENSMUST00000201642.2	2427	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	139.72251130469	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCTCTGTCATTGTTCC	NA	False	NA	11	True	AATAAA	-19	NA	92285824	92350655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_92286023_92300299_92300360_92335563_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
transcript_103207.known	chr5	-	636	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9727	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	False	NA	NA	False	AAAAAG	-44	NA	92288788	92288152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92288200_92288800
transcript_103210.nnic	chr5	-	1864	8	NNC	ENSMUSG00000029410.12	novel	2878	17	NA	NA	-11054	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	7.25905486623571	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTACCTGTGTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	92387934	92374537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_92375087_92376505_92376594_92378261_92378426_92379578_92379686_92382032_92382176_92383590_92383777_92386603_92387003_92387706
transcript_103211.nnic	chr5	-	791	3	NNC	ENSMUSG00000029410.12	novel	2878	17	NA	NA	35	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	10	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTACCTGTGTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	92376845	92374537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_92375087_92376505_92376594_92376691
transcript_103212.known	chr5	-	1629	11	FSM	ENSMUSG00000029413.15	ENSMUST00000159345.8	1629	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	12.5892811550144	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAACTCTGACTTTTGAT	9203	False	NA	NA	False	AGTAAA	-14	NA	92426024	92406291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92406803_92407412_92407491_92409210_92409240_92410367_92410435_92411268_92411332_92411449_92411623_92412939_92413017_92415900_92415992_92420302_92420430_92424777_92424937_92425770
transcript_103216.known	chr5	-	2156	22	FSM	ENSMUSG00000029415.5	ENSMUST00000201143.2	2156	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	77.7590324025538	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTCAAGGAACACTATAAT	NA	False	NA	-36	True	ATTAAA	-1	NA	92457753	92434599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446118_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_103220.known	chr5	-	5020	22	FSM	ENSMUSG00000029415.5	ENSMUST00000031364.5	5020	22	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_13	31.6626205793221	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGAAATCTCTCCAT	NA	False	NA	-6	True	AATAAA	-17	NA	92457883	92431868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_103226.known	chr5	-	996	8	FSM	ENSMUSG00000029415.5	ENSMUST00000202604.2	996	8	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_2	27.4456791885799	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACCAAAATAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	92457848	92449493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_103237.known	chr5	-	2352	12	FSM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	63.2088235288462	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	False	NA	0	True	AATAAA	-25	NA	92583078	92563398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
transcript_103241.nnic	chr5	-	2212	11	NIC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	-48	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_7	179.096761556428	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	False	NA	0	True	AATAAA	-25	NA	92583126	92563398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92575958_92576186_92578659_92578813_92578897_92578982_92582862
transcript_103246.known	chr5	-	560	5	FSM	ENSMUSG00000034826.15	ENSMUST00000142525.8	560	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	269.05529171529	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAACAAAAAAGAAACAGAT	NA	False	NA	NA	False	AATAAA	-29	NA	92582405	92573608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582370
transcript_103248.known	chr5	-	631	4	FSM	ENSMUSG00000034826.15	ENSMUST00000122893.2	631	4	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_1	53.8908361618395	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTTGTTTTTTTAGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	92582950	92575879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92576186_92578659_92578813_92578897_92578982_92582862
transcript_103249.known	chr5	-	4698	12	FSM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	0	0	0	0	multi-exon	TRUE	canonical	3	99	junction_7	16.1496104397404	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCACTGTGAACTGTCTC	NA	False	NA	-11	True	ATTAAA	-16	NA	92653496	92589172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_92592144_92594162_92594322_92596403_92596456_92597729_92597804_92599205_92599325_92601898_92602069_92602590_92602711_92607900_92607993_92608612_92608802_92609795_92609944_92633055_92633214_92653050
transcript_10325.known	chr10	+	405	2	FSM	ENSMUSG00000049422.8	ENSMUST00000219435.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	16591	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCTGCTGTGTGCCCAT	8593	False	NA	20	True	ATTAAA	-17	NA	75773053	75773578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75773289_75773408
transcript_10326.known	chr10	-	1221	7	FSM	ENSMUSG00000050157.7	ENSMUST00000059658.6	1221	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	10.6991692304694	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAATTATGTCTCCTGT	4916	False	NA	NA	False	AGTAAA	-42	NA	75776506	75773556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775553_75775673_75775764_75775852_75776227_75776255_75776397
transcript_103260.known	chr5	+	6435	10	FSM	ENSMUSG00000029381.17	ENSMUST00000113051.9	6435	10	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	24.0066863114075	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGTCAAATTGAATATGGA	NA	False	NA	7	True	AATGAA	-12	NA	93045851	93113167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_93046080_93067503_93067636_93081612_93081745_93087835_93090999_93096262_93096337_93098342_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
transcript_103269.known	chr5	-	3900	1	FSM	ENSMUSG00000045314.6	ENSMUST00000061328.6	3900	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTTTCTCTTGTCTAT	63	False	NA	-4	True	NA	NA	NA	93192881	93188981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_93189000_93192900
transcript_10327.nnic	chr10	-	2473	2	Antisense	novelGene_ENSMUSG00000000903.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTTTTGTGACTCTAAA	3156	False	NA	NA	False	NA	NA	NA	75786787	75783368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr10_-_75785445_75786390
transcript_103274.known	chr5	+	1792	10	FSM	ENSMUSG00000058013.12	ENSMUST00000202308.4	1792	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	237.094813560491	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCCATCCCTGCCT	NA	False	NA	4	True	TTTAAA	-16	NA	93241309	93324296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93323898
transcript_103275.known	chr5	+	5028	10	FSM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_7	47.9165942028438	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTGTGCCCGTTTGTG	NA	False	NA	12	True	AATATA	-17	NA	93241295	93322817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93319197
transcript_103276.known	chr5	+	3478	9	FSM	ENSMUSG00000058013.12	ENSMUST00000201700.4	3478	9	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_7	50.8046196226288	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93241296	93317617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358
transcript_103277.nnic	chr5	-	2891	8	NNC	ENSMUSG00000063015.13	novel	2804	7	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_7	182.803898498151	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTGTAGGAGTTTTTG	NA	False	NA	-2	True	AATAAA	-18	NA	93354345	93329791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_93331280_93335446_93335678_93335938_93336080_93337005_93337081_93337422_93337552_93350163_93350322_93351125_93351222_93353772
transcript_103282.known	chr5	-	2804	7	FSM	ENSMUSG00000063015.13	ENSMUST00000058550.15	2804	7	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_6	48.6052694902746	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTGTAGGAGTTTTTG	NA	False	NA	-2	True	AATAAA	-18	NA	93354354	93329791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_93331280_93335446_93335678_93335938_93336080_93337005_93337081_93337422_93337552_93350163_93350322_93353772
transcript_103287.known	chr5	+	917	1	FSM	ENSMUSG00000029384.6	ENSMUST00000201993.2	917	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAACAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	93354391	93355308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_93354400_93355300
transcript_103288.known	chr5	+	2810	8	FSM	ENSMUSG00000029385.15	ENSMUST00000031331.13	2810	8	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	8.90998064543581	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTATTTCAGTTTTTAAT	NA	False	NA	NA	False	AATAAA	-28	NA	93415115	93424090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_93415657_93416480_93416619_93417123_93417262_93418652_93418904_93419059_93419139_93419221_93419321_93421196_93421403_93422732
transcript_103293.nic	chr5	+	2666	7	NIC	ENSMUSG00000029385.15	novel	2810	8	NA	NA	-39	0	intron_retention	FALSE	canonical	3	45	junction_3	9.41039614232874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATTCCTATTTCAGT	NA	False	NA	NA	False	AATAAA	-21	NA	93415408	93424083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_93415657_93416480_93416619_93417123_93417262_93418652_93419139_93419221_93419321_93421196_93421403_93422732
transcript_103297.known	chr5	+	690	4	FSM	ENSMUSG00000029385.15	ENSMUST00000153260.8	690	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.4667396060396	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTATATTAGTCAAATT	NA	False	NA	NA	False	AATAAA	-14	NA	93415459	93417575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_93415657_93416480_93416619_93417123_93417262_93417358
transcript_1033.known	chr1	+	345	2	FSM	ENSMUSG00000061518.12	ENSMUST00000192859.2	345	2	0	0	0	0	multi-exon	FALSE	canonical	3	7305	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTCCCGTCCATCAGCAA	NA	False	NA	NA	False	NA	NA	NA	36730722	36731588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36730771_36731291
transcript_103303.known	chr5	-	8564	12	FSM	ENSMUSG00000034724.19	ENSMUST00000155901.8	8564	12	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_9	8.72253659368072	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTCTTGGGTTTTGAT	NA	False	NA	-1	True	AATAAA	-20	NA	96309849	96218191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074_96254165_96276801_96276888_96278917_96279105_96281869_96281992_96309795
transcript_103310.known	chr5	+	3431	9	FSM	ENSMUSG00000029486.14	ENSMUST00000036437.13	3431	9	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_1	44.6738178355063	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATCTTTATTCTATT	NA	False	NA	NA	False	ATTAAA	-31	NA	96357973	96414568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
transcript_103313.nic	chr5	+	539	5	ISM	ENSMUSG00000029486.14	ENSMUST00000121477.2	1550	7	-6	11992	-6	-11992	5prime_fragment	FALSE	canonical	3	666	junction_1	23.1624696438009	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAATAGCAGAAGAAAAT	NA	False	NA	NA	False	TTTAAA	-44	NA	96357996	96375551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538
transcript_103314.nic	chr5	+	523	4	ISM	ENSMUSG00000029486.14	ENSMUST00000121477.2	1550	7	-3	13316	-3	-13316	5prime_fragment	FALSE	canonical	3	666	junction_1	26.7124606795322	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTAGCTTTGCCAACAA	NA	False	NA	NA	False	NA	NA	NA	96357999	96374227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143
transcript_103316.known	chr5	+	1595	13	FSM	ENSMUSG00000029484.13	ENSMUST00000031447.12	1595	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.64991582276861	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTGCTTCTGTTACTT	NA	False	NA	NA	False	AATACA	-15	NA	96941243	96993825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_96941423_96945259_96945313_96958908_96958997_96960700_96960796_96964199_96964314_96968260_96968352_96972745_96972826_96976206_96976264_96976555_96976650_96978251_96978348_96982633_96982693_96986151_96986275_96993359
transcript_103317.known	chr5	+	3244	14	FSM	ENSMUSG00000034663.14	ENSMUST00000112974.6	3244	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	5.94053371578702	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTTGTATGGTATTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	97145547	97217508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_97145956_97175689_97175809_97178995_97179102_97184754_97184898_97186279_97186402_97188531_97188614_97192893_97193027_97200955_97201060_97202710_97202791_97204724_97204886_97209264_97209516_97211303_97211403_97212687_97212873_97216257
transcript_103319.nic	chr5	-	3782	6	ISM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	-67	6289	-44	2663	5prime_fragment	TRUE	canonical	3	151	junction_3	20.8096131631513	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTGCCTGCCTTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	97259499	97241127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
transcript_103321.nic	chr5	-	3683	6	ISM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	-67	6388	-44	2564	5prime_fragment	FALSE	canonical	3	151	junction_3	20.8096131631513	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCCGCAGCAAGCCGTT	NA	False	NA	NA	False	AATAAA	-26	NA	97259499	97241226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
transcript_103323.nic	chr5	-	3442	6	ISM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	-67	6629	-44	2323	5prime_fragment	FALSE	canonical	3	151	junction_3	20.8096131631513	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCTTTGTAGTAATGTAT	NA	False	NA	NA	False	ATTAAA	-27	NA	97259499	97241467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
transcript_103325.nic	chr5	-	3269	6	ISM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	-67	6802	-44	2150	5prime_fragment	FALSE	canonical	3	151	junction_3	20.8096131631513	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGTTCTCATTTATCCT	NA	False	NA	NA	False	AAAACA	-8	NA	97259499	97241640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
transcript_103326.known	chr5	-	1875	3	FSM	ENSMUSG00000055725.12	ENSMUST00000112968.2	1875	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	19	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGAGGACCCAGGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	97259455	97250000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_97251375_97256024_97256188_97259117
transcript_103328.known	chr5	-	3424	2	FSM	ENSMUSG00000046000.6	ENSMUST00000060265.6	3424	2	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	0	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAGTGAGTTAATAACAT	NA	False	NA	-3	True	AATAAA	-19	NA	97540238	97530056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_97532729_97539486
transcript_103331.known	chr5	-	4968	19	FSM	ENSMUSG00000029334.15	ENSMUST00000161490.8	4968	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	5.01386965216377	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGTGTCAATGGTGTC	NA	False	NA	2	True	ATTAAA	-29	NA	99185210	99077631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_99079965_99082187_99082255_99090012_99090076_99091272_99091396_99095229_99095394_99114370_99114513_99115585_99115676_99117795_99117933_99119710_99119865_99120966_99121066_99124294_99124364_99127624_99127720_99128944_99129023_99136145_99136210_99140175_99140282_99142390_99142505_99145204_99145372_99172252_99172727_99184781
transcript_103336.known	chr5	-	2987	14	FSM	ENSMUSG00000089809.10	ENSMUST00000168092.8	2987	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_13	1.81707874015657	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGAGTTGTGGCGTCTT	NA	False	NA	-1	True	AATACA	-15	NA	99400786	99365284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_99366658_99369219_99369293_99370176_99370301_99370798_99370895_99375846_99375943_99377179_99377260_99379949_99380053_99380160_99380257_99381773_99381849_99382334_99382548_99388681_99388820_99389267_99389391_99390922_99391106_99400572
transcript_103337.known	chr5	-	2990	14	FSM	ENSMUSG00000089809.10	ENSMUST00000031276.15	2990	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.0897042626471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGAGTTGTGGCGTCTT	NA	False	NA	-1	True	AATACA	-15	NA	99400786	99365284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_99366658_99369219_99369293_99370176_99370301_99370798_99370895_99375846_99375943_99377179_99377260_99379949_99380053_99380160_99380257_99381773_99381849_99382334_99382551_99388681_99388820_99389267_99389391_99390922_99391106_99400572
transcript_10334.nnic	chr10	+	5093	4	NNC	ENSMUSG00000049764.9	novel	378	3	NA	NA	-222	-413	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	64.4997846680299	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTCTGTCTTTTTTTTT	NA	False	NA	16	True	AATAAA	-18	NA	75868261	75878655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_75868584_75868786_75868910_75869448_75869509_75874067
transcript_103340.known	chr5	-	6811	9	FSM	ENSMUSG00000000568.16	ENSMUST00000172361.8	6811	9	0	0	0	0	multi-exon	FALSE	canonical	3	2301	junction_7	859.13983145935	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGCACTGTCTTTT	NA	False	NA	1	True	ATTAAA	-19	NA	100126797	100103793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
transcript_103344.known	chr5	-	1670	8	FSM	ENSMUSG00000000568.16	ENSMUST00000112939.10	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	1800	junction_7	925.260845736521	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTCTTTTATCATCAGA	NA	False	NA	NA	False	AATAAA	-21	NA	100126776	100108856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
transcript_103345.known	chr5	-	2000	8	FSM	ENSMUSG00000000568.16	ENSMUST00000019128.15	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_2	1208.23732295085	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAATCTATTAATTTAA	NA	False	NA	-10	True	AATAAA	-15	NA	100126796	100108456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
transcript_103347.nic	chr5	-	2927	8	NIC	ENSMUSG00000000568.16	novel	6811	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	2301	junction_6	866.95323885856	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGCTCTTTTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	100126799	100108860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
transcript_103350.known	chr5	-	1537	7	FSM	ENSMUSG00000000568.16	ENSMUST00000072750.13	1537	7	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_2	1330.01989333493	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGCTCTTTTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	100126794	100108860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
transcript_10336.known	chr10	+	378	3	FSM	ENSMUSG00000049764.9	ENSMUST00000218627.2	378	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGCAGAGCTGATCTTC	NA	False	NA	NA	False	NA	NA	NA	75868483	75874222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75868584_75868786_75868910_75874067
transcript_103361.nic	chr5	-	2538	9	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-243	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_8	425.280771226492	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTTTCCTGCGTCAGGT	NA	False	NA	-20	True	AATAAA	-15	NA	100187766	100182585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
transcript_103362.known	chr5	-	2149	9	FSM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_2	358.236915322807	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTTTCCTGCGTCAGGT	NA	False	NA	-20	True	AATAAA	-15	NA	100187523	100182585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_103364.known	chr5	-	2752	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	-14	True	AATAAA	-18	NA	100187081	100181435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_103365.nic	chr5	-	2437	8	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-243	-2	combination_of_known_junctions	FALSE	canonical	3	110	junction_7	355.117974073693	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCTGCGTCAGGTACTG	NA	False	NA	-16	True	AATAAA	-19	NA	100187766	100182581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
transcript_103368.known	chr5	-	1477	8	FSM	ENSMUSG00000029328.16	ENSMUST00000149384.8	1477	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	409.537668646996	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGTTCATTCTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	100186754	100183284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
transcript_10337.nnic	chr10	+	4914	3	NNC	ENSMUSG00000049764.9	novel	5097	2	NA	NA	-166	-413	at_least_one_novel_splicesite	FALSE	canonical	1	26	junction_1	62	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTCTGTCTTTTTTTTT	NA	False	NA	16	True	AATAAA	-18	NA	75868317	75878655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_75868584_75869448_75869509_75874067
transcript_103374.known	chr5	-	2374	7	FSM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	0	0	0	0	multi-exon	FALSE	canonical	3	934	junction_3	92.4764234218046	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186728	100182579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_10338.nnic	chr10	+	4934	3	NNC	ENSMUSG00000049764.9	novel	5097	2	NA	NA	-42	-269	at_least_one_novel_splicesite	FALSE	canonical	1	26	junction_1	62	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATTTTTAAATCTTATT	NA	False	NA	12	True	AATAAA	-20	NA	75868441	75878799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_75868584_75869448_75869509_75874067
transcript_103381.nic	chr5	-	1610	4	ISM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	-296	2452	-296	-1219	5prime_fragment	FALSE	canonical	3	941	junction_1	91.193323342349	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGAAGAGGATTCTGTT	NA	False	NA	NA	False	AAAACA	-3	NA	100187819	100185037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_100185076_100185426_100185589_100185671_100185841_100186578
transcript_103382.nic	chr5	-	1626	3	ISM	ENSMUSG00000029328.16	ENSMUST00000149384.8	1477	8	-1002	2171	-233	-1637	5prime_fragment	FALSE	canonical	3	110	junction_2	521	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGAATATTTTGGAGCC	NA	False	NA	NA	False	AAAAAG	-44	NA	100187756	100185455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_100185589_100185671_100185841_100186432
transcript_103383.nic	chr5	-	1543	3	ISM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	-296	2870	-296	-1637	5prime_fragment	FALSE	canonical	3	983	junction_2	84.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGAATATTTTGGAGCC	NA	False	NA	NA	False	AAAAAG	-44	NA	100187819	100185455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_100185589_100185671_100185841_100186578
transcript_103386.known	chr5	+	1420	7	FSM	ENSMUSG00000029326.14	ENSMUST00000031268.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_6	172.72618021983	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187902	100216619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216154
transcript_103389.nnic	chr5	+	2707	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	-973	-70	intron_retention	FALSE	canonical	3	76	junction_1	168.151122505917	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGTTTATTCTGATGCA	NA	False	NA	8	True	TATAAA	-19	NA	100186870	100216549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_100188133_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
transcript_10339.nnic	chr10	+	5089	3	NNC	ENSMUSG00000049764.9	novel	378	3	NA	NA	-15	-413	intron_retention	FALSE	canonical	1	1	junction_1	74.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTCTGTCTTTTTTTTT	NA	False	NA	16	True	AATAAA	-18	NA	75868468	75878655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_75868910_75869448_75869509_75874067
transcript_103390.nnic	chr5	+	2777	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	-973	0	intron_retention	FALSE	canonical	3	76	junction_1	168.151122505917	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100186870	100216619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_100188133_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
transcript_103393.known	chr5	+	1833	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187843	100216619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
transcript_103397.nnic	chr5	+	2767	5	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	12	0	intron_retention	FALSE	canonical	3	76	junction_1	184.982431598247	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187855	100216619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_100188133_100206998_100207101_100208832_100210135_100211617_100211742_100215657
transcript_1034.known	chr1	+	625	4	FSM	ENSMUSG00000061518.12	ENSMUST00000081180.7	625	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	3394.14034280651	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730529	36732467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36730771_36731291_36731366_36731511_36731632_36732277
transcript_103405.nnic	chr5	-	4354	28	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-73	0	combination_of_known_splicesites	FALSE	canonical	2	51	junction_7	217.697988658871	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	8035	False	NA	-8	True	ATTAAA	-18	NA	100564166	100509508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100523819_100523913_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
transcript_10341.known	chr10	+	5097	2	FSM	ENSMUSG00000049764.9	ENSMUST00000061617.7	5097	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAACAAAAAGCAAGC	NA	False	NA	NA	False	NA	NA	NA	75868487	75879068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_75868584_75874067
transcript_103414.nnic	chr5	-	4414	27	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-26	0	at_least_one_novel_splicesite	TRUE	canonical	2	53	junction_26	174.664111296935	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	8082	False	NA	-8	True	ATTAAA	-18	NA	100564119	100509508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563761
transcript_103415.nnic	chr5	-	4261	27	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-73	0	combination_of_known_splicesites	FALSE	canonical	2	466	junction_5	100.698448422967	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	8035	False	NA	-8	True	ATTAAA	-18	NA	100564166	100509508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
transcript_103419.nic	chr5	-	4216	27	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	2	163	junction_5	145.633410441033	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	8035	False	NA	-8	True	ATTAAA	-18	NA	100564166	100509508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
transcript_103428.nnic	chr5	-	4183	26	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-73	0	combination_of_known_splicesites	FALSE	canonical	2	64	junction_13	176.439469507251	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	8035	False	NA	-8	True	ATTAAA	-18	NA	100564166	100509508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
transcript_10343.nic	chr10	+	5039	2	NIC	ENSMUSG00000049764.9	novel	378	3	NA	NA	-25	-413	intron_retention	FALSE	canonical	3	22	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTCTGTCTTTTTTTTT	NA	False	NA	16	True	AATAAA	-18	NA	75868458	75878655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_75868910_75874067
transcript_103444.nnic	chr5	-	4144	25	NIC	ENSMUSG00000035325.17	novel	4047	26	NA	NA	-73	0	combination_of_known_splicesites	FALSE	canonical	2	48	junction_13	182.154238673347	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	8035	False	NA	-8	True	ATTAAA	-18	NA	100564166	100509508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
transcript_10348.nnic	chr10	-	1994	15	NNC	ENSMUSG00000020226.10	novel	3202	15	NA	NA	-4524	-1130	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	4.04817923294422	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAATGACCGGGAAATGT	NA	False	NA	NA	False	TATAAA	-18	NA	75951319	75894457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_75894734_75896182_75896289_75898047_75898264_75899787_75899957_75906337_75906489_75908261_75908370_75910813_75910950_75917149_75917371_75925739_75925821_75926512_75926619_75939657_75939763_75942540_75942601_75944331_75944437_75945851_75945924_75951237
transcript_103481.nic	chr5	-	2051	16	ISM	ENSMUSG00000035325.17	ENSMUST00000094578.11	4228	28	-73	23508	-73	-2278	5prime_fragment	FALSE	canonical	3	714	junction_12	59.8199520784384	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTCGCAAAATCCCAAAG	8035	False	NA	NA	False	AAGAAA	-1	NA	100564166	100533015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
transcript_103503.known	chr5	-	1931	1	FSM	ENSMUSG00000035325.17	ENSMUST00000182171.2	1931	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAAAAAAAAAAATTCTA	7611	False	NA	NA	False	TTTAAA	-38	NA	100557471	100555540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100555500_100557500
transcript_103507.known	chr5	-	626	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTAGAATGTTGTGTT	NA	False	NA	-7	True	AATAAA	-31	NA	100577394	100568700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
transcript_10351.known	chr10	-	2016	11	FSM	ENSMUSG00000020230.16	ENSMUST00000020452.12	2016	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	2.63818119165458	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCATTTTGTTCTGTTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	76073671	76043060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072656_76073583
transcript_103515.known	chr5	-	4451	13	FSM	ENSMUSG00000118665.1	ENSMUST00000239512.1	4451	13	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_11	17.2980409937722	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTTTTGCATTTT	NA	False	NA	NA	False	AATAAA	-34	NA	100648493	100589899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100632998_100633715_100648359
transcript_103516.nic	chr5	-	3847	13	NIC	ENSMUSG00000118665.1	novel	4451	13	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_11	48.956542520439	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTTTTGCATTTT	NA	False	NA	NA	False	AATAAA	-34	NA	100648552	100589899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100633661_100633715_100648359
transcript_103519.nic	chr5	-	2316	13	NIC	ENSMUSG00000118665.1	novel	4451	13	NA	NA	-59	-1372	combination_of_known_junctions	FALSE	canonical	3	30	junction_11	48.956542520439	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGATTTTTAGAGTGGATT	NA	False	NA	NA	False	NA	NA	NA	100648552	100591430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100633661_100633715_100648359
transcript_10352.known	chr10	-	6322	38	FSM	ENSMUSG00000020231.16	ENSMUST00000036033.14	6322	38	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_36	7.13728468849439	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGCATTTTGAAATGT	NA	False	NA	-14	True	AATAAA	-16	NA	76181094	76098884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_76100708_76101331_76101456_76102150_76102326_76104325_76104401_76105937_76105996_76106229_76106292_76108366_76108538_76108868_76109038_76109982_76110114_76110822_76110933_76112162_76112275_76112417_76112540_76114321_76114446_76115539_76115621_76115690_76115801_76116509_76116712_76118346_76118462_76121359_76121488_76122195_76122277_76123146_76123284_76126841_76126982_76128145_76128261_76130327_76130448_76131900_76131995_76132186_76132252_76133588_76133692_76134086_76134197_76134503_76134628_76135736_76135848_76138037_76138130_76140849_76141048_76142906_76143027_76149009_76149139_76153700_76153929_76155300_76155421_76157323_76157441_76163535_76163608_76180940
transcript_103525.nic	chr5	-	1302	3	ISM	ENSMUSG00000118665.1	ENSMUST00000239512.1	4451	13	-59	37888	-59	4412	5prime_fragment	FALSE	canonical	3	163	junction_1	22.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTAGAATAGTTATAGC	NA	False	NA	NA	False	NA	NA	NA	100648552	100627787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_100628181_100632998_100633715_100648359
transcript_103527.known	chr5	+	1755	10	FSM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	0	0	0	0	multi-exon	FALSE	canonical	3	1193	junction_9	105.134834062424	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTGTTCTATTCCTTTT	5273	False	NA	43	True	AATAAA	-45	NA	100666174	100695669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
transcript_103531.nic	chr5	+	1526	9	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	442.714284273729	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5399	False	NA	20	True	AATAAA	-22	NA	100666300	100695646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_100666417_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
transcript_103535.known	chr5	+	2389	4	FSM	ENSMUSG00000035297.15	ENSMUST00000147729.8	2389	4	0	0	0	0	multi-exon	FALSE	canonical	3	1291	junction_2	34.9380403953437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAAAAACTG	5407	False	NA	NA	False	AATGAA	-12	NA	100666308	100679961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912
transcript_103537.known	chr5	-	744	5	FSM	ENSMUSG00000029322.13	ENSMUST00000031264.12	744	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0.82915619758885	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTGTGTGGT	NA	False	NA	NA	False	AATAAA	-19	NA	100720111	100701590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100701855_100704345_100704462_100707617_100707743_100710490_100710629_100720010
transcript_103543.known	chr5	-	1743	7	FSM	ENSMUSG00000029319.9	ENSMUST00000031262.9	1743	7	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_5	48.3206880009887	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCGACTCTTCATTACAG	NA	False	NA	-1	True	AATAAA	-20	NA	100822150	100802588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445_100811568_100815757_100815925_100821854
transcript_103545.nic	chr5	-	1561	6	NIC	ENSMUSG00000029319.9	novel	1743	7	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_5	105.678758508983	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCGACTCTTCATTACAG	NA	False	NA	-1	True	AATAAA	-20	NA	100822135	100802588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445_100811568_100821854
transcript_103548.known	chr5	-	3117	12	FSM	ENSMUSG00000035273.15	ENSMUST00000045617.15	3117	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_7	2.99862227317648	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATGGTCATTCTTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	100867582	100827349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100828897_100832845_100832993_100836686_100836806_100839164_100839280_100840048_100840156_100840750_100840845_100842017_100842066_100843352_100843522_100846778_100846953_100856522_100856649_100859194_100859341_100867257
transcript_103554.known	chr5	-	3689	18	FSM	ENSMUSG00000035266.17	ENSMUST00000044684.14	3689	18	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_16	11.2714232774287	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGGGTGATTAAGTCTA	NA	False	NA	5	True	ATTAAA	-26	NA	100946464	100910010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100910503_100912806_100912942_100914553_100914668_100916147_100916322_100918263_100918363_100919599_100919758_100921810_100922031_100926597_100926703_100927017_100927160_100930823_100931064_100933147_100933294_100934849_100934949_100938004_100938103_100939202_100939276_100939642_100939844_100940529_100940709_100944219_100944929_100946159
transcript_10357.known	chr10	-	9341	42	FSM	ENSMUSG00000001151.11	ENSMUST00000217838.2	9341	42	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_22	52.6752139792264	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTGGCTACAGCCATTC	NA	False	NA	-16	True	AATAAA	-18	NA	76278620	76187096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684_76211135_76215738_76215890_76216050_76216274_76217066_76217260_76217853_76218022_76220574_76220740_76221537_76221705_76223260_76223364_76224685_76225367_76228027_76228874_76235689_76235861_76237165_76237370_76239457_76239479_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254401_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
transcript_103586.nnic	chr5	+	508	6	NNC	ENSMUSG00000016833.15	novel	638	6	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	731.986447961982	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTGAGTGGAAATGTCT	NA	False	NA	48	True	AATAAA	-30	NA	100946598	100952334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_100946727_100947417_100947459_100949773_100949858_100950918_100950977_100951835_100951896_100952197
transcript_103587.known	chr5	+	638	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	0	0	0	0	multi-exon	FALSE	canonical	3	1615	junction_5	130.796636042369	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGAAATGTCTTTC	NA	False	NA	51	True	AATAAA	-33	NA	100946492	100952337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
transcript_103588.known	chr5	+	460	5	FSM	ENSMUSG00000016833.15	ENSMUST00000112898.8	460	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	755.69086768334	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAACTAATTTGAGTGGA	NA	False	NA	41	True	AATAAA	-23	NA	100946602	100952327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100951835_100951896_100952197
transcript_103590.known	chr5	+	457	5	FSM	ENSMUSG00000016833.15	ENSMUST00000198453.2	457	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	769.215631341433	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTGAGTGGAAATGTCT	NA	False	NA	48	True	AATAAA	-30	NA	100946608	100952334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_100946727_100949773_100949858_100950918_100950977_100951835_100951896_100952197
transcript_103593.known	chr5	+	2297	1	FSM	ENSMUSG00000104761.2	ENSMUST00000197084.2	2297	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAAGAGATGGAAAGGG	NA	False	NA	NA	False	NA	NA	NA	100946614	100948911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_100946600_100948900
transcript_103594.known	chr5	-	1657	10	FSM	ENSMUSG00000035234.19	ENSMUST00000117364.8	1657	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	36.8299395118217	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTAAAGTTTGTAAT	NA	False	NA	-14	True	AATAAA	-8	NA	100968806	100953068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
transcript_103595.known	chr5	-	2139	9	FSM	ENSMUSG00000035234.19	ENSMUST00000055245.13	2139	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	23.2725025512943	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968831	100953057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
transcript_103601.known	chr5	-	358	2	FSM	ENSMUSG00000035234.19	ENSMUST00000131857.2	358	2	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	TTTAAA	-43	NA	100968806	100966225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_100966474_100968696
transcript_103602.known	chr5	+	2884	13	FSM	ENSMUSG00000029314.15	ENSMUST00000031255.15	2884	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	3.86939558874797	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGCATTATTCTTC	NA	False	NA	5	True	AATAAA	-16	NA	100994084	101046965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_100994228_100994520_100994815_101005007_101005075_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
transcript_103604.known	chr5	+	1178	2	FSM	ENSMUSG00000106164.2	ENSMUST00000198824.2	1178	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAATAAAAACAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	101851451	101853716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_101851977_101853063
transcript_103605.known	chr5	+	3924	13	FSM	ENSMUSG00000029330.9	ENSMUST00000031273.9	3924	13	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_6	11.4561361529774	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCGCTGCTGTTTTCTA	NA	False	NA	10	True	AATAAA	-19	NA	101912995	101971724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_101913356_101929240_101929369_101939340_101939438_101944869_101944968_101946242_101946383_101954428_101954488_101956531_101956615_101957751_101957840_101960360_101960430_101962265_101962419_101963714_101963835_101965718_101965823_101969299
transcript_10362.nnic	chr10	-	4335	21	NIC	ENSMUSG00000001151.11	novel	9341	42	NA	NA	-86	2409	combination_of_known_splicesites	FALSE	canonical	3	73	junction_9	14.8306270939566	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATGGAAGAATTAAAGGTA	NA	False	NA	NA	False	AAGAAA	-2	NA	76278706	76237182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_76237370_76239591_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254401_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
transcript_103626.known	chr5	+	707	4	FSM	ENSMUSG00000092354.8	ENSMUST00000173965.8	707	4	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	58.0574428188726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAAGGATGTTAAAGGAG	NA	False	NA	-40	True	NA	NA	NA	101985307	101992143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_101985425_101989616_101989710_101989836_101989940_101991749
transcript_103628.nnic	chr5	+	2421	4	NNC	ENSMUSG00000092354.8	novel	619	3	NA	NA	-74	670	intron_retention	FALSE	canonical	0	0	junction_3	65.2380257212004	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCGTGCTTGTCAAGT	NA	False	NA	NA	False	AATAAA	-10	NA	101987946	101994946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_101988098_101989616_101989940_101991749_101993560_101994809
transcript_103632.known	chr5	+	619	3	FSM	ENSMUSG00000092354.8	ENSMUST00000174312.2	619	3	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	60.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101988020	101992198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_101988098_101989616_101989710_101991749
transcript_103642.nic	chr5	+	3470	18	ISM	ENSMUSG00000034573.15	ENSMUST00000048957.11	7915	48	-337	56869	-28	0	5prime_fragment	FALSE	canonical	3	18	junction_6	10.5656622127096	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATGCGTTTGTTTTCCT	NA	False	NA	NA	False	AGTAAA	-18	NA	103573029	103689300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232_103649779_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837
transcript_103643.nnic	chr5	+	2924	17	NIC	ENSMUSG00000034573.15	novel	3439	18	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_6	12.8403660383963	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATGCGTTTGTTTTCCT	NA	False	NA	NA	False	AGTAAA	-18	NA	103573029	103689300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837
transcript_103644.known	chr5	+	3408	7	FSM	ENSMUSG00000034573.15	ENSMUST00000196800.2	3408	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	13.8644228953903	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTTTGTTTGAGTGCTT	NA	False	NA	NA	False	AATAAA	-12	NA	103573121	103651720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232
transcript_103645.known	chr5	+	3439	18	FSM	ENSMUSG00000034573.15	ENSMUST00000199412.5	3439	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	14.0972892434624	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATGCGTTTGTTTTCCT	NA	False	NA	NA	False	AGTAAA	-18	NA	103573057	103689300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_103573403_103609999_103610120_103624812_103624992_103634570_103634637_103637473_103637660_103640088_103640177_103649232_103649779_103664193_103664290_103665353_103665436_103671435_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837
transcript_103647.known	chr5	+	1613	7	FSM	ENSMUSG00000029313.19	ENSMUST00000126335.2	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	18.46994555728	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTTAATATTACATGGC	NA	False	NA	NA	False	ATTAAA	-13	NA	103840239	103964294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_103840470_103863215_103863272_103930989_103931111_103931521_103932380_103958928_103958974_103962847_103962935_103964078
transcript_103655.nnic	chr5	-	3173	10	NNC	ENSMUSG00000029312.13	novel	3193	10	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	39.6851808644853	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGAAAAAAATGGAAACTA	NA	False	NA	NA	False	AATAAA	-16	NA	104059073	104009945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034157_104058919
transcript_103656.known	chr5	-	3193	10	FSM	ENSMUSG00000029312.13	ENSMUST00000031254.9	3193	10	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_9	11.7473401244707	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTTTAATGTCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	104059125	104009915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034157_104058981
transcript_103662.known	chr5	-	1825	7	FSM	ENSMUSG00000029311.17	ENSMUST00000031251.16	1825	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.86744175568088	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGTCCCTCTGTCTTT	NA	False	NA	NA	False	AATAAA	-30	NA	104169785	104137627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_104138461_104140683_104140801_104151037_104151176_104156444_104156552_104157660_104157793_104166039_104166148_104169395
transcript_103663.nic	chr5	+	1538	8	NIC	ENSMUSG00000029310.14	novel	995	6	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	99.0728447730687	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194376	104213245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_104194705_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
transcript_103664.known	chr5	+	1488	8	FSM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_1	16.2468207250979	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194734	104213245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_104195013_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
transcript_10367.nic	chr10	-	4079	20	ISM	ENSMUSG00000001151.11	ENSMUST00000217838.2	9341	42	-17	52495	-17	0	5prime_fragment	FALSE	canonical	3	73	junction_8	13.6631416754425	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTCAGCCTGTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	76278637	76239591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_76239709_76240255_76240486_76244531_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254401_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
transcript_103671.known	chr5	+	1456	7	FSM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_1	2050.93187491822	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAGTCTGGTGGTGTCA	NA	False	NA	28	True	AATAAA	-15	NA	104582986	104588913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
transcript_103673.known	chr5	+	1410	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	2387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582983	104588916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
transcript_103674.known	chr5	+	1507	6	FSM	ENSMUSG00000029304.15	ENSMUST00000112747.2	1507	6	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_2	333.11595578717	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAAGGAGTCTGGTGGT	NA	False	NA	24	True	AATAAA	-11	NA	104584057	104588909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
transcript_103675.known	chr5	+	5219	15	FSM	ENSMUSG00000034462.10	ENSMUST00000086831.4	5219	15	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_14	9.78049913170622	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGGTGTTAAAAACACGT	NA	False	NA	9	True	AATAAA	-15	NA	104607315	104653685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_104608092_104614748_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890_104631120_104634512_104634681_104637098_104637281_104638509_104638631_104642758_104642858_104646306_104646429_104646623_104646742_104647035_104647200_104650157_104650306_104651317
transcript_103679.nic	chr5	+	2217	6	ISM	ENSMUSG00000034462.10	ENSMUST00000130931.2	2282	9	-17	6476	-17	-6476	5prime_fragment	FALSE	canonical	3	61	junction_1	8.79545337091841	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTAGGATGAAATGTG	NA	False	NA	NA	False	NA	NA	NA	104607418	104631710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_104608092_104614748_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890
transcript_103682.nnic	chr5	+	1085	3	NNC	ENSMUSG00000034462.10	novel	2282	9	NA	NA	-17	-24902	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTAAACATTCCGCATGC	NA	False	NA	NA	False	ATTAAA	-24	NA	104607418	104613284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_104608092_104611758_104611874_104612987
transcript_103683.known	chr5	+	5181	2	FSM	ENSMUSG00000097392.5	ENSMUST00000096452.7	5181	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGACTCAGCCAAAAGTG	NA	False	NA	NA	False	CATAAA	-22	NA	104656217	104670249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_104656438_104665288
transcript_103693.known	chr5	-	1923	2	FSM	ENSMUSG00000072774.11	ENSMUST00000191135.2	1923	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTAAATGTTTGTTTCC	NA	False	NA	NA	False	AATAAA	-11	NA	105007659	104983585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_104985382_105007532
transcript_103696.known	chr5	+	6726	5	FSM	ENSMUSG00000070639.6	ENSMUST00000112707.3	6726	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	5.11737237261468	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATTGGCCTTGTTTTTG	3368	False	NA	13	True	AATAAA	-26	NA	105563640	105637940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_105563779_105616662_105616718_105624051_105624151_105627632_105629795_105633668
transcript_103699.known	chr5	+	6976	4	FSM	ENSMUSG00000054720.13	ENSMUST00000067924.13	6976	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0.471404520791032	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGGGACCCATCCTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	105667253	105760884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_105667497_105692065_105692137_105727333_105727476_105754364
transcript_103700.nnic	chr5	+	2709	3	NNC	ENSMUSG00000054720.13	novel	6976	4	NA	NA	-13514	2086	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	10.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTAAAGTTTTATTTGT	8856	False	NA	NA	False	AATAAA	-28	NA	105693209	105756824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_105693317_105727333_105727476_105754364
transcript_10372.nic	chr10	-	3726	18	ISM	ENSMUSG00000001151.11	ENSMUST00000217838.2	9341	42	-20	57444	-20	-4949	5prime_fragment	FALSE	canonical	3	73	junction_6	13.3818034793469	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGCTGGTGAGAAGTGT	NA	False	NA	NA	False	AAGAAA	-1	NA	76278640	76244540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_76244745_76245301_76245465_76247359_76247593_76247854_76248007_76248331_76248484_76254193_76254401_76255811_76256377_76258601_76259060_76262718_76262807_76263646_76263888_76265033_76265146_76268837_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
transcript_103730.known	chr5	+	3923	3	FSM	ENSMUSG00000046079.17	ENSMUST00000060531.16	3923	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	205.5	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTCACAACCTTTCTTG	4071	False	NA	24	True	AATAAA	-35	NA	105847834	105963081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_105848121_105880095_105880241_105959589
transcript_103735.nnic	chr5	+	4033	3	NNC	ENSMUSG00000046079.17	novel	3923	3	NA	NA	194	0	intron_retention	FALSE	canonical	3	23	junction_1	266.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4265	False	NA	19	True	AATAAA	-30	NA	105848028	105963076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_105848430_105880095_105880241_105959589
transcript_103741.known	chr5	+	3929	3	FSM	ENSMUSG00000046079.17	ENSMUST00000120847.8	3929	3	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	122	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4891	False	NA	19	True	AATAAA	-30	NA	105848654	105963076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_105848952_105880095_105880241_105959589
transcript_103745.known	chr5	-	393	1	FSM	ENSMUSG00000067058.8	ENSMUST00000132586.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGTAAAGCATAAATAAAAG	NA	False	NA	NA	False	AAAACA	-35	NA	105945579	105945186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_105945200_105945600
transcript_103746.known	chr5	+	2667	12	FSM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_1	8.12708968677346	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTTCTTTTGTCATGT	NA	False	NA	NA	False	AATACA	-16	NA	106024433	106063684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
transcript_103749.known	chr5	+	1554	10	FSM	ENSMUSG00000029290.13	ENSMUST00000138615.8	1554	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	13.4660065844828	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGTTTAGTTTTTATAG	NA	False	NA	5	True	AATAAA	-16	NA	106024441	106063043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_106024565_106026614_106026660_106034052_106034143_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
transcript_103754.nic	chr5	+	1060	7	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	-46	19242	-43	71	5prime_fragment	FALSE	canonical	3	25	junction_1	3.39934634239519	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTGAAAAATATGGAGATG	NA	False	NA	NA	False	NA	NA	NA	106024387	106044442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983_106039183_106044357
transcript_103755.nic	chr5	+	882	6	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	-46	24595	-43	3192	5prime_fragment	FALSE	canonical	3	25	junction_1	2.65329983228432	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGCAAATATTTATTAAG	NA	False	NA	NA	False	AATAAA	-9	NA	106024387	106039089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983
transcript_103756.nic	chr5	+	975	6	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	-46	24502	-43	3285	5prime_fragment	FALSE	canonical	3	25	junction_1	2.65329983228432	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAAGACTATTGCTCG	NA	False	NA	NA	False	NA	NA	NA	106024387	106039182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983
transcript_103769.known	chr5	-	449	2	FSM	ENSMUSG00000099061.2	ENSMUST00000124394.3	449	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTACGGTTCTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	106722584	106705604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_106705923_106722453
transcript_103772.known	chr5	-	5785	6	FSM	ENSMUSG00000049606.17	ENSMUST00000112696.8	5785	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	33.3742415644161	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCTCTAATGTGAAACAT	NA	False	NA	-14	True	AATAAA	-19	NA	106844696	106764604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_106766295_106767405_106767509_106782696_106783303_106783475_106786502_106814650_106814712_106844397
transcript_103781.known	chr5	-	620	5	FSM	ENSMUSG00000049606.17	ENSMUST00000124263.2	620	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	28.3670142947755	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTAGTGTTTCATTAAC	NA	False	NA	NA	False	NA	NA	NA	106844430	106786149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_106786502_106814650_106814712_106827545_106827610_106829769_106829880_106844397
transcript_103788.known	chr5	-	1210	3	FSM	ENSMUSG00000049606.17	ENSMUST00000137285.8	1210	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	37	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAGAAAAAAAGAGAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	106844430	106785683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_106786502_106814650_106814712_106844099
transcript_103790.known	chr5	-	1484	3	FSM	ENSMUSG00000049606.17	ENSMUST00000142391.8	1484	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAACAAAATAACAAA	NA	False	NA	NA	False	NA	NA	NA	106844032	106837685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_106838744_106843508_106843566_106843663
transcript_103792.known	chr5	-	518	2	FSM	ENSMUSG00000049606.17	ENSMUST00000155495.8	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAGTCTTGCTCCACTT	NA	False	NA	NA	False	AATGAA	-45	NA	106844516	106786102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_106786502_106844397
transcript_103800.known	chr5	+	2961	12	FSM	ENSMUSG00000029283.18	ENSMUST00000031221.12	2961	12	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_8	37.8828119074671	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	10	True	AATAAA	-15	NA	107112187	107132298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
transcript_103801.nic	chr5	+	2963	12	NIC	ENSMUSG00000029283.18	novel	2961	12	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_10	76.50290331011	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112163	107132297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127181_107127311_107130829
transcript_103805.known	chr5	+	3129	12	FSM	ENSMUSG00000029283.18	ENSMUST00000118261.8	3129	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	77.2190187680738	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112426	107132297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107112700_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
transcript_10381.nic	chr10	-	1202	7	ISM	ENSMUSG00000001151.11	ENSMUST00000217838.2	9341	42	-86	81756	-86	-29261	5prime_fragment	FALSE	canonical	3	104	junction_1	4.81028989655394	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGAGTTGGAGGTAGG	NA	False	NA	NA	False	NA	NA	NA	76278706	76268852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
transcript_103810.known	chr5	+	3679	11	FSM	ENSMUSG00000029283.18	ENSMUST00000140378.8	3679	11	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_7	28.5629130167075	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	10	True	AATAAA	-15	NA	107112257	107132298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107123527_107124495_107124579_107127160_107127311_107130829
transcript_103811.known	chr5	+	2864	11	FSM	ENSMUSG00000029283.18	ENSMUST00000117196.9	2864	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	74.2377262582846	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112187	107132297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107123350_107123527_107124495_107124579_107127160_107127311_107130829
transcript_103812.known	chr5	+	2785	11	FSM	ENSMUSG00000029283.18	ENSMUST00000076467.13	2785	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_9	99.5953814190196	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	10	True	AATAAA	-15	NA	107112246	107132298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107123350_107123527_107124495_107124579_107127181_107127311_107130829
transcript_103819.nic	chr5	+	4301	10	NIC	ENSMUSG00000029283.18	novel	2864	11	NA	NA	27	0	intron_retention	FALSE	canonical	3	232	junction_7	20.9290394275042	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112214	107132297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107123527_107124495_107124579_107127160_107127311_107130829
transcript_103826.known	chr5	-	6087	17	FSM	ENSMUSG00000029287.15	ENSMUST00000031224.15	6087	17	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_8	3.80788655293195	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTCATATCTGGTCAT	277	False	NA	-5	True	AATAAA	-20	NA	107437495	107254435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_107257624_107266284_107266393_107269225_107269274_107278326_107278445_107280598_107280896_107284784_107284944_107285395_107285537_107287634_107287788_107288249_107288579_107290222_107290413_107295891_107296040_107297655_107297825_107302117_107302302_107325670_107325809_107362758_107362944_107414059_107414217_107437120
transcript_103827.known	chr5	-	1368	7	FSM	ENSMUSG00000029287.15	ENSMUST00000146591.2	1368	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	2.68741924943285	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGTGGTTGTGTGTGTT	311	False	NA	NA	False	NA	NA	NA	107437461	107295845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_107296040_107297655_107297825_107302117_107302302_107325670_107325809_107362758_107362944_107414059_107414217_107437120
transcript_103828.known	chr5	+	4745	19	FSM	ENSMUSG00000029279.16	ENSMUST00000031215.15	4745	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.67405768592437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTCTGATCACAATTT	NA	False	NA	NA	False	NA	NA	NA	107479024	107534924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107479174_107489165_107489308_107489885_107490126_107491418_107491557_107493001_107493117_107496331_107496505_107497941_107498293_107504617_107504747_107505612_107505802_107506702_107506876_107507058_107507340_107507445_107507572_107507637_107507854_107517168_107517231_107518020_107518196_107524130_107524229_107524875_107525082_107525769_107525951_107533323
transcript_103829.known	chr5	+	1607	7	FSM	ENSMUSG00000029279.16	ENSMUST00000112677.10	1607	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	0.74535599249993	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTAAACTTTGTGTTTGCC	NA	False	NA	NA	False	AGTAAA	-15	NA	107479040	107498607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107479174_107489165_107489308_107489885_107490126_107491418_107491557_107493001_107493117_107496331_107496505_107497941
transcript_103830.known	chr5	+	1279	7	FSM	ENSMUSG00000033805.13	ENSMUST00000049146.12	1279	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	2.26691175145591	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGTAATTCTTTTTCAT	NA	False	NA	NA	False	AATAAA	-27	NA	107551361	107577901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107551642_107553897_107553984_107560881_107561040_107561363_107561493_107567641_107567746_107574665_107574815_107577528
transcript_103834.known	chr5	-	2015	19	FSM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_15	25.8010551033179	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGCATAATTCTTTT	NA	False	NA	NA	False	CATAAA	-27	NA	107745505	107696832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_103835.nic	chr5	-	2057	19	NIC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	56.5136550744733	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGCATAATTCTTTT	NA	False	NA	NA	False	CATAAA	-27	NA	107745523	107696832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_103844.nic	chr5	-	1645	17	ISM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	-18	2101	-18	-2044	5prime_fragment	FALSE	canonical	3	217	junction_13	26.6200112697196	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAAATAACTTTCTAAAG	NA	False	NA	NA	False	ATTAAA	-41	NA	107745523	107698933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_103847.known	chr5	+	2268	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	12.1951720866178	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTTTCAGAAGCTGACA	NA	False	NA	26	True	AATAAA	-19	NA	107745600	107809704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
transcript_103848.nnic	chr5	+	2166	13	NNC	ENSMUSG00000033773.15	novel	2268	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	43.2540139434738	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTTTCAGAAGCTGACA	NA	False	NA	26	True	AATAAA	-19	NA	107745586	107809704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_107745611_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
transcript_103852.known	chr5	+	795	6	FSM	ENSMUSG00000089798.11	ENSMUST00000239050.2	795	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	1.2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGGTTGAATGGTTCC	NA	False	NA	NA	False	ATTAAA	-16	NA	107682576	107696243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_107682675_107686995_107687090_107691785_107691880_107693553_107693723_107694066_107694146_107695982
transcript_103855.nic	chr5	-	749	6	ISM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	-18	24748	-18	-1435	5prime_fragment	FALSE	canonical	3	217	junction_2	26.7536913340944	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGCAAAACTAAAAGATGAAT	NA	False	NA	NA	False	GATAAA	-15	NA	107745523	107721580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_103857.known	chr5	-	2042	19	FSM	ENSMUSG00000029276.14	ENSMUST00000124546.8	2042	19	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_18	75.5102805526228	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTCATTATACTTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	107745410	107696889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745254
transcript_103868.nic	chr5	-	1680	11	ISM	ENSMUSG00000011831.17	ENSMUST00000128723.8	2441	18	-20	24082	-20	1207	5prime_fragment	FALSE	canonical	3	153	junction_1	18.3698121928342	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATTAGAAAAAGTAAGTAAA	NA	False	NA	NA	False	TTTAAA	-15	NA	108017054	107960234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_107960278_107961411_107961473_107963476_107963575_107963667_107963758_107964639_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570_107969761_107989936_107990167_108016656
transcript_103871.known	chr5	-	1587	10	FSM	ENSMUSG00000011831.17	ENSMUST00000124034.8	1587	10	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	15.8885003837506	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAATGGAAGAACAAGG	NA	False	NA	NA	False	AATAAA	-5	NA	108017034	107961441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_107961473_107963476_107963575_107963667_107963758_107964639_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570_107969761_107989936_107990167_108016656
transcript_103875.nic	chr5	-	1700	9	ISM	ENSMUSG00000011831.17	ENSMUST00000124034.8	1587	10	-144	2035	-144	0	5prime_fragment	FALSE	canonical	3	169	junction_2	15.7480157480236	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAATTTGTATGATCT	NA	False	NA	NA	False	AATACA	-20	NA	108017178	107963476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_107963575_107963667_107963758_107964639_107964784_107966754_107966881_107967469_107967545_107968297_107968523_107969570_107969761_107989936_107990167_108016656
transcript_103877.known	chr5	-	526	4	FSM	ENSMUSG00000011831.17	ENSMUST00000127579.2	526	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	90.5096679918781	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACGCAAGAAGAAAGAAAAG	NA	False	NA	NA	False	AATGAA	-11	NA	108016765	107969599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_107969761_107985286_107985313_107989936_107990167_108016656
transcript_103878.nnic	chr5	+	940	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	353	junction_5	2481.0635639103	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTCTGTGTTAAGCTG	NA	False	NA	-2	True	AATAAA	-16	NA	108048372	108055916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051590_108052582_108052761_108055054_108055144_108055762
transcript_103879.known	chr5	+	2045	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	0	0	0	0	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGGCATTCTTAATT	NA	False	NA	24	True	AATAAA	-18	NA	108048367	108056871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
transcript_103882.nic	chr5	+	1485	8	NIC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	2625.0489752477	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTCTGTGTTAAGCTG	NA	False	NA	-2	True	AATAAA	-16	NA	108048397	108055916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_108048938_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
transcript_103886.nic	chr5	+	1933	7	NIC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	5	0	intron_retention	FALSE	canonical	3	7026	junction_3	376.251688811271	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTCTGTGTTAAGCTG	NA	False	NA	-2	True	AATAAA	-16	NA	108048372	108055916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108052761_108055054_108055144_108055762
transcript_10389.known	chr10	+	6427	29	FSM	ENSMUSG00000001150.8	ENSMUST00000170795.3	6427	29	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_5	51.5606810130608	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGCCTTAGTTTTATGA	NA	False	NA	12	True	AATAAA	-18	NA	76304760	76351691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_76305049_76305782_76307087_76307256_76307484_76312347_76312427_76312616_76312759_76313553_76313745_76316834_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
transcript_103896.known	chr5	-	2721	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTTGATCAATATGTTT	NA	False	NA	NA	False	NA	NA	NA	108134951	108055918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
transcript_10395.nic	chr10	+	4479	23	NIC	ENSMUSG00000001150.8	novel	6427	29	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	59.3729632099542	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGCCTTAGTTTTATGA	NA	False	NA	12	True	AATAAA	-18	NA	76316922	76351691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_76317346_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
transcript_103961.nnic	chr5	+	1972	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4946	0	intron_retention	FALSE	canonical	3	616	junction_3	357.553592386612	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAAAAACAG	NA	False	NA	28	True	NA	NA	NA	108208593	108254866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_103962.nnic	chr5	+	2050	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	0	intron_retention	FALSE	canonical	3	616	junction_3	357.553592386612	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGATGATACTGGCCTTAA	NA	False	NA	113	True	AAAACA	-33	NA	108208600	108254951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_103963.nnic	chr5	+	2435	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	0	intron_retention	FALSE	canonical	3	616	junction_3	357.553592386612	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATGTAAAAAAATATATT	NA	False	NA	-26	True	NA	NA	NA	108208600	108255336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_103965.nnic	chr5	+	3969	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	0	intron_retention	FALSE	canonical	3	616	junction_3	357.553592386612	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208600	108256870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_10397.known	chr10	-	4522	5	FSM	ENSMUSG00000033126.6	ENSMUST00000049185.6	4522	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	3.63145976158349	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTCTCTCGTGATTCCT	NA	False	NA	NA	False	NA	NA	NA	76304948	76295400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_76299154_76300090_76300160_76302070_76302200_76303990_76304221_76304607
transcript_103971.known	chr5	+	3330	15	FSM	ENSMUSG00000029267.18	ENSMUST00000143412.8	3330	15	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	498.553709263514	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTAGCTCTTCATTTT	NA	False	NA	104	True	AGTAAA	-14	NA	108213607	108256136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108213832_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_104.known	SIRV3	+	2373	3	FSM	SIRV3A	SIRV306	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1944	8292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_+_2006_4003_4081_6057
transcript_104015.nnic	chr5	+	1326	12	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4957	0	intron_retention	FALSE	canonical	3	616	junction_3	385.4952165507	108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGGAAAGAAAAAA	NA	False	NA	NA	False	ATTAAA	-38	NA	108208582	108251905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
transcript_104037.nnic	chr5	+	1129	11	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	0	intron_retention	FALSE	canonical	3	616	junction_3	403.59961595621	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAATAAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	108208600	108248690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678
transcript_104038.nnic	chr5	+	1297	11	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4948	159	intron_retention	FALSE	canonical	3	616	junction_3	403.59961595621	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTCTGCGTCACAGCT	NA	False	NA	NA	False	ATTAAA	-36	NA	108208591	108248849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678
transcript_104047.nic	chr5	+	1452	11	ISM	ENSMUSG00000029267.18	ENSMUST00000143412.8	3330	15	-69	7287	-1	159	5prime_fragment	FALSE	canonical	3	126	junction_1	565.561879903517	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTCTGCGTCACAGCT	NA	False	NA	NA	False	ATTAAA	-36	NA	108213538	108248849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_108213832_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678
transcript_104073.known	chr5	-	3800	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGTTACCTACTCC	NA	False	NA	0	True	AATAAA	-31	NA	108280486	108269492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
transcript_104075.known	chr5	+	4060	15	FSM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	595.009556603068	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108213607	108256870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_104076.known	chr5	+	1932	14	FSM	ENSMUSG00000029267.18	ENSMUST00000134026.8	1932	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	712.399038834658	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAAAAACAG	NA	False	NA	28	True	NA	NA	NA	108213607	108254866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_104077.known	chr5	-	482	3	FSM	ENSMUSG00000063406.12	ENSMUST00000117759.2	482	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	115.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGCAGCTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	108280399	108277332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108277419_108277883_108277982_108280101
transcript_104086.nic	chr5	+	1083	8	ISM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-130	75043	-91	-2908	5prime_fragment	FALSE	canonical	2	64	junction_4	10.1619538535879	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCTTCAAGAAAAGTGTAAT	1013	False	NA	NA	False	AATAAA	-2	NA	108280649	108306451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779_108286939_108288724_108288832_108296776_108296906_108303624_108303722_108306390
transcript_104090.known	chr5	+	3085	3	FSM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	9	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTATATTTAATGAT	NA	False	NA	NA	False	AATAAA	-21	NA	108416762	108428392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108417676_108423434_108423599_108426384
transcript_104095.known	chr5	+	4573	13	FSM	ENSMUSG00000029263.16	ENSMUST00000119014.8	4573	13	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_6	9.64761052742537	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAACTTTTGTCTGTTTTCT	NA	False	NA	NA	False	AATAAA	-25	NA	108460474	108497221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108460945_108461824_108462031_108465128_108465339_108466690_108466880_108467761_108467904_108474682_108474896_108479840_108480059_108480549_108480832_108483969_108484428_108486420_108486613_108489660_108489971_108492089_108492254_108495702
transcript_104104.known	chr5	-	1380	1	FSM	ENSMUSG00000106103.2	ENSMUST00000199082.2	1380	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAACAAAACAAAACAC	NA	False	NA	NA	False	NA	NA	NA	108460615	108459235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108459200_108460600
transcript_104105.known	chr5	-	371	4	FSM	ENSMUSG00000050856.17	ENSMUST00000049628.16	371	4	0	0	0	0	multi-exon	FALSE	canonical	3	3979	junction_1	506.673026275877	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTCTCTTTACTGTTT	5502	False	NA	0	True	AATAAA	-24	NA	108582314	108581109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108581204_108581596_108581696_108581891_108581947_108582191
transcript_104106.known	chr5	-	563	3	FSM	ENSMUSG00000050856.17	ENSMUST00000123184.2	563	3	0	0	0	0	multi-exon	FALSE	canonical	3	3979	junction_1	613.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTCTCTCTTTACTGT	5553	False	NA	-2	True	AATAAA	-22	NA	108582263	108581111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108581204_108581596_108581696_108581891
transcript_104109.nnic	chr5	+	2863	12	NNC	ENSMUSG00000033623.14	novel	7708	11	NA	NA	-3	-2620	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	37.6396572998864	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCAGTCTGGCAATGTT	NA	False	NA	NA	False	AATAAA	-25	NA	108609094	108652222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108609318_108619937_108619978_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701_108635791_108643699_108643838_108647492_108647574_108648222_108649282_108651509
transcript_10411.known	chr10	+	4667	22	FSM	ENSMUSG00000033105.13	ENSMUST00000048678.7	4667	22	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_9	27.7651309078683	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCAGATTGATTTATTT	NA	False	NA	NA	False	AATACA	-20	NA	76367440	76391313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76381895_76382046_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
transcript_104111.known	chr5	+	7708	11	FSM	ENSMUSG00000033623.14	ENSMUST00000046975.12	7708	11	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_9	9.83666610188635	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGGATTCCTCTGTGT	NA	False	NA	15	True	AATAAA	-21	NA	108609097	108654842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108609318_108619937_108619978_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701_108635791_108643699_108643838_108647492_108647574_108648222
transcript_104122.known	chr5	+	2169	8	FSM	ENSMUSG00000033623.14	ENSMUST00000112597.8	2169	8	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_2	4.29047354790892	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAATGTTTGCTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	108609097	108637090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108609318_108619937_108619978_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701
transcript_104124.known	chr5	+	354	1	FSM	ENSMUSG00000060730.9	ENSMUST00000136334.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	108665044	108665398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108665000_108665400
transcript_104125.known	chr5	-	2189	4	FSM	ENSMUSG00000033615.10	ENSMUST00000046892.10	2189	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	1.4142135623731	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTATTCCTTCCAAGACT	NA	False	NA	0	True	AATAAA	-19	NA	108697890	108666419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108668193_108673257_108673434_108696371_108696476_108697754
transcript_104146.known	chr5	-	4453	28	FSM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_10	27.4864725426801	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGCTTGTAAAGCAC	NA	False	NA	-28	True	ATTAAA	-23	NA	108777605	108717279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
transcript_104157.known	chr5	-	4310	27	FSM	ENSMUSG00000062234.15	ENSMUST00000135225.8	4310	27	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_23	73.3495017589351	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGCTTGTAAAGCAC	NA	False	NA	-28	True	ATTAAA	-23	NA	108777605	108717279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108771125_108771241_108772048_108772109_108772895_108772958_108777366
transcript_104162.nic	chr5	-	4368	27	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	73.3449033817007	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGCTTGTAAAGCAC	NA	False	NA	-28	True	ATTAAA	-23	NA	108777667	108717279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
transcript_104169.nic	chr5	-	4692	27	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	-46	0	intron_retention	FALSE	canonical	3	318	junction_9	27.9418246027381	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCAGTCTCTGGCTTGTA	NA	False	NA	-34	True	ATTAAA	-17	NA	108777667	108717285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
transcript_104196.known	chr5	-	4938	23	FSM	ENSMUSG00000004815.13	ENSMUST00000053913.13	4938	23	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	9.2499720794754	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACCCTTCACTGCAAA	NA	False	NA	NA	False	AATAAA	-11	NA	108808677	108794558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_108796678_108797010_108797164_108797243_108797356_108797452_108797600_108797690_108797792_108798066_108798246_108798355_108798505_108798682_108798835_108800259_108800376_108801046_108801086_108801501_108801653_108801949_108802012_108802221_108802277_108802409_108802501_108802581_108802803_108802973_108803075_108803155_108803231_108803305_108803460_108803709_108803836_108803911_108803998_108804289_108804390_108806071_108806152_108808308
transcript_10420.nnic	chr10	+	2980	21	NIC	ENSMUSG00000033105.13	novel	4667	22	NA	NA	-1	689	combination_of_known_splicesites	FALSE	canonical	2	7	junction_14	51.7483091511211	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAAAACAACCACCTGC	NA	False	NA	-6	True	AATAAA	-2	NA	76367420	76389756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
transcript_104209.known	chr5	+	3373	14	FSM	ENSMUSG00000033540.19	ENSMUST00000112563.9	3373	14	0	0	0	0	multi-exon	FALSE	canonical	2	36	junction_11	7.1294040681437	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGCCTCCCAAGTCTTC	NA	False	NA	17	True	NA	NA	NA	108816971	108832423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108817384_108817984_108818126_108827364_108827451_108827569_108827678_108827976_108828073_108828160_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108831132
transcript_104216.known	chr5	+	3956	11	FSM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_10	21.559220765139	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTTAGCCTTTCTCAG	NA	False	NA	NA	False	NA	NA	NA	108777697	108796648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
transcript_104219.known	chr5	+	1811	11	FSM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	36.4367945900843	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCAGTGAAGGGTTTCA	NA	False	NA	21	True	NA	NA	NA	108777874	108794537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
transcript_104224.known	chr5	+	2374	11	FSM	ENSMUSG00000013495.16	ENSMUST00000078323.13	2374	11	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	41.0677489034887	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTTTTGAACATTGAAAA	NA	False	NA	NA	False	AATAAA	-25	NA	108777867	108795129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108777910_108786138_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
transcript_104231.nic	chr5	+	1450	10	ISM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	-35	3687	27	-21	5prime_fragment	FALSE	canonical	3	99	junction_1	13.0251418797514	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTAGATTTTGCATCTG	NA	False	NA	7	True	ATTAAA	-15	NA	108777662	108792961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
transcript_104240.nic	chr5	+	1571	10	ISM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-190	1576	-13	-21	5prime_fragment	FALSE	canonical	3	25	junction_1	34.906223577529	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTAGATTTTGCATCTG	NA	False	NA	7	True	ATTAAA	-15	NA	108777684	108792961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
transcript_104252.known	chr5	+	1686	8	FSM	ENSMUSG00000013495.16	ENSMUST00000146207.6	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	14.7149791792207	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGACAGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	108777635	108791896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904
transcript_104253.known	chr5	+	3022	13	FSM	ENSMUSG00000033540.19	ENSMUST00000119212.8	3022	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	16.1113745189195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTACCTGGCCTCCCAAG	NA	False	NA	12	True	NA	NA	NA	108817176	108832418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108817384_108827364_108827451_108827569_108827678_108827976_108828073_108828160_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108831132
transcript_104257.known	chr5	+	2329	7	FSM	ENSMUSG00000008090.15	ENSMUST00000013633.12	2329	7	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	17.0171482138851	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCGTATATTTAATTT	NA	False	NA	-24	True	NA	NA	NA	108842367	108854762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108842399_108842760_108842985_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
transcript_104259.nnic	chr5	+	2509	7	NNC	ENSMUSG00000008090.15	novel	2318	6	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	38.2044936274954	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATTGCCTCCTT	NA	False	NA	4	True	NA	NA	NA	108842071	108854790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108842255_108842760_108842985_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
transcript_104260.nnic	chr5	+	2360	7	NNC	ENSMUSG00000008090.15	novel	2318	6	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	40.3928624057931	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATTGCCTCCTT	NA	False	NA	4	True	NA	NA	NA	108842077	108854790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_108842255_108842903_108842985_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
transcript_104261.nic	chr5	+	2490	7	NIC	ENSMUSG00000008090.15	novel	2329	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	30.2402417685809	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATTGCCTCCTT	NA	False	NA	4	True	NA	NA	NA	108842091	108854790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_108842399_108842903_108842985_108851151_108851425_108852532_108852614_108852720_108853006_108853084_108853439_108853681
transcript_104263.known	chr5	+	2318	6	FSM	ENSMUSG00000008090.15	ENSMUST00000112560.8	2318	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	42.3820716813135	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAATTGCCTCCTT	NA	False	NA	4	True	NA	NA	NA	108842133	108854790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_108842399_108842760_108842985_108852532_108852614_108852720_108853006_108853084_108853439_108853681
transcript_104279.nnic	chr5	-	560	3	NNC	ENSMUSG00000106028.2	novel	489	6	NA	NA	2236	1621	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	21	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCCCGGGACACGCAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	109699786	109698136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_109698395_109699328_109699371_109699526
transcript_104284.known	chr5	-	1323	8	FSM	ENSMUSG00000033467.13	ENSMUST00000044579.12	1323	8	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_7	229.794229159703	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGCGGCCAGCCATCAT	NA	False	NA	-11	True	NA	NA	NA	109706859	109702578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706670
transcript_104285.nnic	chr5	-	1215	8	NNC	ENSMUSG00000033467.13	novel	1323	8	NA	NA	-135	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_7	231.923280770313	206	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGCGGCCAGCCATCAT	NA	False	NA	-11	True	NA	NA	NA	109706994	109702578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706913
transcript_104286.known	chr5	-	1405	8	FSM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	232.416937104552	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109706802	109702574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706670
transcript_10429.known	chr10	-	4100	35	FSM	ENSMUSG00000001119.8	ENSMUST00000001147.5	4100	35	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	13.9481553641435	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGCCTCTTTATCTACA	8442	False	NA	0	True	AATAAA	-15	NA	76562002	76544625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76548698_76548708_76549018_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555456_76555511_76556794_76556840_76556921_76556943_76557096_76557118_76557236_76557366_76557649_76557810_76559209_76559411_76560772_76560903_76561653
transcript_104301.known	chr5	-	599	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	15.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTGATTAAATTCTCA	7657	False	NA	NA	False	NA	NA	NA	109899752	109886696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_109886877_109887064_109887192_109899460
transcript_104302.known	chr5	-	665	2	FSM	ENSMUSG00000105471.2	ENSMUST00000196262.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109944164	109917272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_109917822_109944048
transcript_104303.known	chr5	-	589	2	FSM	ENSMUSG00000097863.2	ENSMUST00000181488.2	589	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCCAACCGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	110144264	110143376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110143686_110143984
transcript_104304.known	chr5	+	451	3	FSM	ENSMUSG00000066613.15	ENSMUST00000099484.9	451	3	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	18.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCCAGGTGTCTGATT	8371	False	NA	NA	False	NA	NA	NA	110144387	110155333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110144500_110154809_110154937_110155121
transcript_104308.known	chr5	-	1617	10	FSM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_7	48.631900316511	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256063	110251840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255721
transcript_104312.nic	chr5	-	1853	9	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-154	0	combination_of_known_junctions	FALSE	canonical	3	150	junction_8	32.0497659897853	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCGGCCTGGTTTTGTAT	NA	False	NA	-8	True	ATTAAA	-24	NA	110256217	110251844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925_110255064_110255721
transcript_104315.nnic	chr5	-	1475	8	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-71	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_7	80.7902297588625	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCGGCCTGGTTTTGTAT	NA	False	NA	-8	True	ATTAAA	-24	NA	110256134	110251844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110255721
transcript_104317.nic	chr5	-	1818	8	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	150	junction_7	31.16185527997	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCGGCCTGGTTTTGTAT	NA	False	NA	-8	True	ATTAAA	-24	NA	110256063	110251844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110255064_110255721
transcript_10432.nnic	chr10	-	3043	27	NNC	ENSMUSG00000001119.8	novel	4100	35	NA	NA	-77	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	16.7316091743182	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGCCTCTTTATCTACA	NA	False	NA	0	True	AATAAA	-15	NA	76555147	76544625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76548698_76548708_76549018_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555094
transcript_104334.known	chr5	+	3158	5	FSM	ENSMUSG00000023284.16	ENSMUST00000112528.8	3158	5	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_1	12.7744862910412	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTATTTGTGAAGATGT	1949	False	NA	NA	False	NA	NA	NA	110257957	110277660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110258184_110259762_110259933_110271625_110271747_110272218_110272312_110275112
transcript_104337.known	chr5	+	748	5	FSM	ENSMUSG00000023284.16	ENSMUST00000147631.8	748	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	18.0052075800308	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCCTTTAAATTTTT	2208	False	NA	NA	False	NA	NA	NA	110258216	110275284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110258409_110259762_110259933_110271625_110271747_110272218_110272312_110275112
transcript_104348.known	chr5	+	3201	19	FSM	ENSMUSG00000014668.16	ENSMUST00000198066.5	3201	19	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	86.3223931292197	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTGTTGTACTCCTG	NA	False	NA	19	True	AATAAA	-19	NA	110283743	110319835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110283801_110283916_110284061_110287982_110288056_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_104357.known	chr5	+	3146	18	FSM	ENSMUSG00000014668.16	ENSMUST00000014812.13	3146	18	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_11	67.7699140155478	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTGTACTCCTGTGC	NA	False	NA	22	True	AATAAA	-22	NA	110283725	110319838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306667_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_104359.nic	chr5	+	3149	18	NIC	ENSMUSG00000014668.16	novel	3201	19	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_2	73.7381038437897	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTGTTGTACTCCTG	NA	False	NA	19	True	AATAAA	-19	NA	110283700	110319835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_110283801_110283916_110284061_110288241_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_104364.known	chr5	+	2623	17	FSM	ENSMUSG00000014668.16	ENSMUST00000198633.5	2623	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	84.7737568104068	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCCTGCTGAAACTCCA	NA	False	NA	NA	False	NA	NA	NA	110283722	110319525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_104367.nnic	chr5	+	3077	17	NIC	ENSMUSG00000014668.16	novel	3201	19	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	81.0771237773023	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTGTTGTACTCCTG	NA	False	NA	19	True	AATAAA	-19	NA	110283694	110319835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_110283801_110283916_110284061_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_104383.known	chr5	+	606	2	FSM	ENSMUSG00000014668.16	ENSMUST00000200038.2	606	2	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATACGATCTTGTCCTCA	NA	False	NA	NA	False	AATATA	-7	NA	110283707	110284429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110283801_110283916
transcript_104384.known	chr5	+	8132	24	FSM	ENSMUSG00000029502.15	ENSMUST00000112512.8	8132	24	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	20.4320997313759	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTCATAATTCATTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	110324566	110374336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110324789_110329468_110329780_110332203_110332354_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
transcript_104385.known	chr5	+	4805	24	FSM	ENSMUSG00000029502.15	ENSMUST00000031477.9	4805	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	18.4207288514263	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCCTTTACTTTTTATC	NA	False	NA	80	True	AAGAAA	-11	NA	110324744	110371067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110324789_110329468_110329780_110332203_110332474_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
transcript_104391.nic	chr5	+	3207	14	ISM	ENSMUSG00000029502.15	ENSMUST00000112512.8	8132	24	-64	20627	-64	-17358	5prime_fragment	FALSE	canonical	3	40	junction_3	22.3222763997904	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAGAGCTGCAACAAGAG	NA	False	NA	NA	False	AAGAAA	-5	NA	110324502	110353709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_110324789_110329468_110329780_110332203_110332354_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642
transcript_104392.nic	chr5	+	3402	14	ISM	ENSMUSG00000029502.15	ENSMUST00000031477.9	4805	24	-317	17358	-139	-17358	5prime_fragment	FALSE	canonical	3	55	junction_3	19.4951063499955	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAGAGCTGCAACAAGAG	NA	False	NA	NA	False	AAGAAA	-5	NA	110324427	110353709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_110324789_110329468_110329780_110332203_110332474_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642
transcript_1044.known	chr1	-	3248	11	FSM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	31.3043128019128	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGAGTAAATATAGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	36749089	36737194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
transcript_104400.known	chr5	+	5215	13	FSM	ENSMUSG00000029501.15	ENSMUST00000031474.11	5215	13	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	61.1323700396661	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGATGTCTGGGAGATG	NA	False	NA	15	True	ATTAAA	-17	NA	110378906	110404513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110379290_110382212_110382687_110384138_110384346_110385523_110385718_110385812_110386002_110389794_110389918_110392369_110392437_110397196_110397367_110398566_110398674_110399362_110399554_110400577_110401209_110401648_110401781_110402166
transcript_104404.nic	chr5	+	2123	10	ISM	ENSMUSG00000029501.15	ENSMUST00000197188.5	4077	13	-23	3827	-23	-1423	5prime_fragment	FALSE	canonical	3	178	junction_3	27.8408173570948	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACGAGAAAATGAAGGCTGC	NA	False	NA	NA	False	AAAAAG	-14	NA	110378846	110399508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_110379290_110382212_110382687_110384138_110384346_110385520_110385718_110385812_110386002_110389794_110389918_110392369_110392437_110397196_110397367_110398566_110398674_110399362
transcript_104412.known	chr5	-	2044	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATTTGTTTTAAAGGG	NA	False	NA	-20	True	AATAAA	-18	NA	110417753	110407020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
transcript_104413.known	chr5	-	2098	6	FSM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	153.77594090104	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGTTTAGAAACCCTTT	NA	False	NA	5	True	AATAAA	-43	NA	110417779	110406995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110408304_110413377_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
transcript_104416.known	chr5	-	1041	5	FSM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_4	29.6004645233821	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTTCTCAGCACAGTT	NA	False	NA	4	True	AATAAA	-28	NA	110434052	110422147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
transcript_104417.nnic	chr5	-	1100	5	NNC	ENSMUSG00000029499.12	novel	1041	5	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	204.212511859582	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	110434102	110422160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_110422495_110425520_110425641_110429062_110429248_110431511_110431620_110433749
transcript_104418.known	chr5	-	700	4	FSM	ENSMUSG00000029499.12	ENSMUST00000155266.2	700	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	226.6686274425	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	110433887	110422160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110422495_110425520_110425641_110431511_110431620_110433749
transcript_104419.known	chr5	-	466	2	FSM	ENSMUSG00000029499.12	ENSMUST00000126882.2	466	2	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTTGATTCCCAGCTCCC	NA	False	NA	NA	False	NA	NA	NA	110433985	110431389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110431620_110433749
transcript_104420.known	chr5	+	7163	49	FSM	ENSMUSG00000007080.15	ENSMUST00000007296.12	7163	49	0	0	0	0	multi-exon	FALSE	canonical	2	122	junction_13	49.0675377809901	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTCTGCCTCTCGTCTG	NA	False	NA	48	True	AGTAAA	-39	NA	110434171	110485340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824_110438980_110441125_110441268_110441580_110441662_110442374_110442483_110442757_110442869_110443093_110443180_110443383_110443504_110444871_110445005_110445213_110445328_110445598_110445812_110446106_110446215_110446757_110446887_110446965_110447069_110447154_110447302_110447638_110447785_110449873_110450023_110451440_110451534_110451720_110451866_110454192_110454351_110454632_110454829_110456801_110457017_110459872_110459976_110460599_110460681_110460771_110460895_110465655_110465866_110466091_110466302_110466481_110466626_110471403_110471545_110471795_110471950_110472025_110472133_110472286_110472464_110472545_110472770_110472949_110473171_110473377_110473583_110475567_110475742_110477411_110477538_110478794_110478937_110480247_110480426_110482026_110482159_110482288_110482483_110483705_110483907_110484239_110484366_110484823_110484914_110484997
transcript_104441.known	chr5	+	747	6	FSM	ENSMUSG00000007080.15	ENSMUST00000112482.2	747	6	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	26.0967430918113	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTGTTCTGTTTTGTGC	NA	False	NA	9	True	AATAAA	-15	NA	110434206	110439101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824
transcript_104444.known	chr5	-	1895	11	FSM	ENSMUSG00000029503.17	ENSMUST00000058016.16	1895	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	1.9723082923316	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTCTCAATTCTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	110490842	110487678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110488449_110488533_110488600_110488721_110488816_110488966_110489098_110489416_110489556_110489639_110489721_110489870_110489968_110490043_110490120_110490198_110490271_110490365_110490538_110490645
transcript_104445.known	chr5	+	692	4	FSM	ENSMUSG00000072754.10	ENSMUST00000100924.5	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.71404520791032	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTCCAGTCCATGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110501961	110503960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110502160_110502356_110502483_110502590_110502717_110503718
transcript_104451.known	chr5	-	3934	18	FSM	ENSMUSG00000043323.18	ENSMUST00000198768.3	3934	18	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_9	64.5158171105307	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGGTTTTCTGCCTTAT	NA	False	NA	NA	False	ATTAAA	-27	NA	110596468	110510435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526759_110526981_110527134_110527460_110529466_110529513_110543910_110543941_110563895_110563932_110565708_110565814_110580766_110580968_110595745
transcript_10447.nic	chr10	-	2202	16	NIC	ENSMUSG00000001120.16	novel	2544	19	NA	NA	-93	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	23.7172229965202	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTCTGACTTCTCTCTG	1044	False	NA	-3	True	AATAAA	-18	NA	76797814	76597690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606871_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
transcript_104473.known	chr5	-	2571	14	FSM	ENSMUSG00000043323.18	ENSMUST00000198834.2	2571	14	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_13	45.448455751296	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGGTCACTGGGAAAAATT	NA	False	NA	NA	False	NA	NA	NA	110534828	110510765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526759_110526981_110527134_110527460_110529466_110529513_110534766
transcript_104482.known	chr5	-	2700	12	FSM	ENSMUSG00000043323.18	ENSMUST00000056124.11	2700	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_11	61.4267015997236	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAAAAAAAATTTTTTT	NA	False	NA	NA	False	TTTAAA	-2	NA	110534962	110510652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110511746_110518815_110519021_110519151_110519236_110519411_110519490_110522255_110522386_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526759_110526981_110527134_110527460_110534766
transcript_104492.nnic	chr5	-	3293	4	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4249	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	247.446065952877	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTGTCTTATTATTTAAG	NA	False	NA	-1	True	AATAAA	-28	NA	110585436	110577740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_110580012_110580766_110580968_110584479_110584595_110584730
transcript_104493.nnic	chr5	-	2857	4	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4461	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_3	229.428759216354	90	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTGTCTTATTATTTAAG	NA	False	NA	-1	True	AATAAA	-28	NA	110585648	110577740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_110580012_110580766_110580968_110584479_110584595_110585378
transcript_104495.nnic	chr5	-	2749	3	NNC	ENSMUSG00000043323.18	novel	976	3	NA	NA	-4468	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	277.5	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTGTCTTATTATTTAAG	NA	False	NA	-1	True	AATAAA	-28	NA	110585655	110577740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_110580012_110580766_110580968_110585378
transcript_104496.known	chr5	-	976	3	FSM	ENSMUSG00000043323.18	ENSMUST00000200293.2	976	3	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_2	98.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGGTCAGCGTGCTTGG	NA	False	NA	NA	False	NA	NA	NA	110596369	110579860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110580012_110580766_110580968_110595745
transcript_104497.known	chr5	+	2883	11	FSM	ENSMUSG00000033316.15	ENSMUST00000040001.14	2883	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.48660687473185	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCATACCTGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	110692220	110769241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110692809_110725305_110725487_110736107_110736275_110737634_110737810_110743931_110744130_110750446_110750565_110761943_110762130_110763262_110763401_110765703_110765800_110767030_110767199_110768373
transcript_104500.known	chr5	-	2075	15	FSM	ENSMUSG00000033294.12	ENSMUST00000042147.6	2075	15	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_9	55.5126847059778	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCTAAATGTTTTT	8841	False	NA	NA	False	NA	NA	NA	110801283	110796283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
transcript_104509.nic	chr5	-	2012	14	NIC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	-25	-170	intron_retention	FALSE	canonical	3	589	junction_8	57.5579975061944	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTGGTTTTTTAGTGTG	8816	False	NA	-14	True	AATAAA	-12	NA	110801308	110796453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
transcript_10451.known	chr10	-	2013	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTCTGACTTCTCTCTG	1236	False	NA	-3	True	AATAAA	-18	NA	76797622	76597690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
transcript_104534.known	chr5	+	4846	15	FSM	ENSMUSG00000029504.6	ENSMUST00000031478.6	4846	15	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_7	18.2382195693885	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTACCCTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	110801316	110808362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110801655_110801743_110801878_110802333_110802485_110802734_110802881_110802957_110803030_110803172_110803280_110803430_110803540_110803625_110803772_110803905_110804099_110804196_110804313_110804390_110804508_110804681_110804784_110804953_110805018_110805116_110805252_110805446
transcript_104559.nic	chr5	-	2871	10	ISM	ENSMUSG00000029505.18	ENSMUST00000112435.9	10420	52	93	64892	-39	8407	5prime_fragment	FALSE	canonical	2	6	junction_7	21.2626142661738	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTTAAATTTACAGAAAGT	NA	False	NA	NA	False	AATAAA	-35	NA	110918490	110877130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110901669_110901781_110903262_110904633_110918357
transcript_104560.nnic	chr5	-	2955	10	NNC	ENSMUSG00000029505.18	novel	10420	52	NA	NA	0	8407	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_9	22.2466532369908	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTTAAATTTACAGAAAGT	NA	False	NA	NA	False	AATAAA	-35	NA	110918583	110877130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110916176_110916279_110918357
transcript_104562.nic	chr5	-	2963	9	NIC	ENSMUSG00000029505.18	novel	10608	52	NA	NA	143	8407	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	18.719975961523	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTTAAATTTACAGAAAGT	NA	False	NA	NA	False	AATAAA	-35	NA	110918250	110877130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110917914
transcript_104563.nic	chr5	-	3055	9	ISM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	-392	64892	-202	8407	5prime_fragment	FALSE	canonical	3	49	junction_4	4.3517237963823	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTTAAATTTACAGAAAGT	NA	False	NA	NA	False	AATAAA	-35	NA	110918785	110877130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
transcript_104570.nic	chr5	-	2746	8	ISM	ENSMUSG00000029505.18	ENSMUST00000112436.9	10685	51	-1	64887	-1	8407	5prime_fragment	FALSE	canonical	3	7	junction_5	17.3734491306095	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTTAAATTTACAGAAAGT	NA	False	NA	NA	False	AATAAA	-35	NA	110918584	110877130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110889835_110889927_110903262_110904633_110918357
transcript_104573.nic	chr5	-	3007	8	ISM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	-392	65450	-202	7849	5prime_fragment	FALSE	canonical	3	49	junction_3	3.9070840946221	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGCTAGGATTCAATG	NA	False	NA	NA	False	AATAGA	-26	NA	110918785	110877688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
transcript_104579.known	chr5	-	3399	6	FSM	ENSMUSG00000029505.18	ENSMUST00000112433.2	3399	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	26.3545062560466	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACACCTGGCTCCTTGTG	NA	False	NA	NA	False	NA	NA	NA	110918021	110885935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110887548_110888047_110888156_110889835_110889927_110901669_110901781_110903262_110904633_110917914
transcript_104582.known	chr5	-	3673	5	FSM	ENSMUSG00000029505.18	ENSMUST00000146458.9	3673	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	2.77263412660235	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAAAATAAAACG	NA	False	NA	NA	False	NA	NA	NA	110918451	110885537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
transcript_104587.known	chr5	-	10608	52	FSM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_30	27.4207396455065	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTCTGTCTTAATAAAC	NA	False	NA	0	True	AATAAA	-19	NA	110918393	110812238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398_110832534_110832942_110833027_110833217_110833377_110835663_110835808_110836057_110836170_110839484_110839682_110841031_110841202_110841285_110841489_110843138_110843405_110843818_110843914_110845074_110845234_110846617_110846783_110849486_110849657_110851317_110851485_110852747_110852935_110855794_110855932_110856028_110856204_110856639_110856810_110858896_110859034_110866952_110867131_110867298_110867490_110868601_110868710_110872287_110872378_110874756_110874815_110875394_110875445_110877099_110877179_110877688_110877830_110881584_110881771_110883215_110883513_110887161_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
transcript_104592.known	chr5	-	1868	7	FSM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	212.004454879818	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928105
transcript_104593.nic	chr5	-	1632	7	NIC	ENSMUSG00000029507.17	novel	1868	7	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_4	232.058481613771	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928549	110921533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928427
transcript_104598.known	chr5	-	1814	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031483.15	1814	6	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_5	100.055184773204	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928105
transcript_104599.known	chr5	-	1510	6	FSM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	177.715052823333	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928481	110921533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928427
transcript_104600.nnic	chr5	-	1567	6	NNC	ENSMUSG00000029507.17	novel	1510	6	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	205.782020594609	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928564	110921533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928453
transcript_104603.nic	chr5	-	1440	5	NIC	ENSMUSG00000029507.17	novel	1510	6	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	246.215733656483	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928549	110921533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110927552_110927764_110928427
transcript_104607.known	chr5	-	3581	28	FSM	ENSMUSG00000029512.12	ENSMUST00000200299.2	3581	28	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_11	217.248929557064	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGCTGCCAGCCAACTC	NA	False	NA	NA	False	NA	NA	NA	110957919	110933959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938821_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450_110942534_110942612_110942672_110943597_110943700_110944021_110944096_110944192_110944367_110946747_110946785_110946989_110947023_110956870_110956913_110956992_110957086_110957479
transcript_10461.nic	chr10	-	1290	11	ISM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-192	19858	-93	8088	5prime_fragment	FALSE	canonical	3	104	junction_6	11.0742945599257	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCTCCTACGTCTGTTG	1044	False	NA	NA	False	NA	NA	NA	76797814	76617548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
transcript_104621.known	chr5	-	804	6	FSM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_3	42.8691030930203	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAATTGGAAATAGATAT	NA	False	NA	3	True	AATAAA	-24	NA	110987643	110976935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110977078_110978801_110978850_110982520_110982666_110983845_110983936_110984172_110984270_110987361
transcript_104624.known	chr5	-	452	5	FSM	ENSMUSG00000043510.13	ENSMUST00000145318.2	452	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	168.71481114591	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGCTTCTGCTAATTGG	NA	False	NA	-7	True	AATAAA	-14	NA	110987441	110976945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_110977078_110978801_110978850_110983840_110983936_110984172_110984270_110987361
transcript_104626.nic	chr5	-	635	3	ISM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	-41	6785	-41	-6774	5prime_fragment	FALSE	canonical	3	372	junction_2	33.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCAGTGTTCTTTGTAAA	NA	False	NA	NA	False	TTTAAA	-15	NA	110987684	110983720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_110983936_110984172_110984270_110987361
transcript_104636.nic	chr5	+	2458	16	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	67.6591457232502	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9147	False	NA	31	True	AAAACA	-7	NA	110987813	111022011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
transcript_104643.known	chr5	+	2276	15	FSM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	48.9833895211386	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9199	False	NA	31	True	AAAACA	-7	NA	110987865	111022011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
transcript_104648.nnic	chr5	+	2342	15	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	3	52	junction_12	80.9591733845031	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9147	False	NA	31	True	AAAACA	-7	NA	110987813	111022011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111021345
transcript_104650.nnic	chr5	+	2218	14	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-37	0	combination_of_known_splicesites	TRUE	canonical	3	52	junction_11	68.5178679240099	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9141	False	NA	31	True	AAAACA	-7	NA	110987807	111022011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111021345
transcript_104665.known	chr5	+	1557	3	FSM	ENSMUSG00000033209.18	ENSMUST00000143505.2	1557	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	7	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGGTCTGTGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	111027687	111062182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_111027855_111040697_111040977_111061071
transcript_10467.known	chr10	-	5063	42	FSM	ENSMUSG00000001435.16	ENSMUST00000081654.13	5063	42	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_22	34.7938605290869	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGTTTATAAGCTGCCT	5935	False	NA	0	True	AATAAA	-20	NA	77002382	76888011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894665_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
transcript_104672.known	chr5	+	2761	12	FSM	ENSMUSG00000050017.12	ENSMUST00000086635.9	2761	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	273.518821024341	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478628	111536225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
transcript_104677.nnic	chr5	+	2762	12	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	351.488334922764	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478596	111536225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_111478700_111483360_111483392_111486179_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
transcript_104679.known	chr5	+	2632	11	FSM	ENSMUSG00000050017.12	ENSMUST00000200298.2	2632	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	361.683231571495	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478672	111536225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
transcript_104705.known	chr5	+	6860	2	FSM	ENSMUSG00000070576.5	ENSMUST00000094463.5	6860	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGGGTGGGGCTTGT	NA	False	NA	NA	False	AATAAA	-26	NA	111565307	111604899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_111569750_111602481
transcript_104707.known	chr5	-	729	5	FSM	ENSMUSG00000085271.8	ENSMUST00000129065.8	729	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.54950975679639	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGCCTTCTTACCATTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	111909591	111882168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_111882496_111886992_111887080_111887701_111887776_111895707_111895859_111909501
transcript_104715.known	chr5	+	1813	7	FSM	ENSMUSG00000029344.16	ENSMUST00000239473.2	1813	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424572	112463221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_104716.nic	chr5	+	1936	7	NIC	ENSMUSG00000029344.16	novel	1813	7	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	128.99956933606	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424526	112463221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_112424638_112451765_112451838_112455431_112456421_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_104718.nic	chr5	+	1871	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	87.1615677284942	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112436555	112463221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_112436679_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_104721.nic	chr5	+	947	6	NIC	ENSMUSG00000029344.16	novel	1813	7	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.943779479539	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424526	112463221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_112424638_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_104724.known	chr5	+	1607	3	FSM	ENSMUSG00000029344.16	ENSMUST00000134071.8	1607	3	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	80.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAACAA	NA	False	NA	NA	False	NA	NA	NA	112424569	112456898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_112424638_112451765_112451838_112455431
transcript_104725.known	chr5	+	294	3	FSM	ENSMUSG00000029344.16	ENSMUST00000151947.3	294	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	118	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTCGGGGGCACACGGA	NA	False	NA	NA	False	NA	NA	NA	112436627	112455602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_112436679_112451765_112451838_112455431
transcript_104726.known	chr5	+	1741	6	FSM	ENSMUSG00000029344.16	ENSMUST00000071455.7	1741	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	131.441241625298	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424572	112463221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_112424638_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_104727.known	chr5	+	3560	14	FSM	ENSMUSG00000029345.14	ENSMUST00000031288.14	3560	14	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	15.3503464486856	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAAGTATATGGGTGTT	NA	False	NA	14	True	AATAAA	-16	NA	112474223	112485939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_112474340_112475350_112475537_112475827_112476049_112477231_112477386_112477612_112477770_112478956_112479085_112479733_112479887_112480829_112481358_112481440_112481548_112482182_112482352_112482725_112482970_112483438_112483582_112483880_112484047_112484851
transcript_104736.known	chr5	-	1110	7	FSM	ENSMUSG00000029346.13	ENSMUST00000031289.7	1110	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	42.3848112207926	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490906	112485257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_112485608_112485841_112485914_112486183_112486339_112487584_112487684_112487762_112487990_112488961_112489003_112490740
transcript_104738.known	chr5	-	1064	7	FSM	ENSMUSG00000029346.13	ENSMUST00000146510.8	1064	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	14.8884742894182	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490886	112485257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_112485608_112485867_112485914_112486183_112486339_112487584_112487684_112487762_112487990_112488961_112489003_112490740
transcript_104739.nic	chr5	-	1189	7	NIC	ENSMUSG00000029346.13	novel	1064	7	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	36.3168923046379	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112490916	112485257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_112485608_112485867_112485914_112486183_112486434_112487584_112487684_112487762_112487990_112488961_112489003_112490740
transcript_104746.known	chr5	-	837	6	FSM	ENSMUSG00000029346.13	ENSMUST00000156083.8	837	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	39.7461947864195	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGCAAAGCCACACTGTC	NA	False	NA	NA	False	NA	NA	NA	112490884	112485837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_112485914_112486183_112486434_112487584_112487684_112487762_112487990_112488961_112489003_112490740
transcript_104755.known	chr5	+	2836	14	FSM	ENSMUSG00000042328.14	ENSMUST00000035279.4	2836	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	21.6682900317355	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490960	112526280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_112491030_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
transcript_104759.known	chr5	+	3345	14	FSM	ENSMUSG00000042328.14	ENSMUST00000112359.9	3345	14	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_1	19.6098031274724	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490948	112526280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_112491030_112491909_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
transcript_104761.nic	chr5	+	3304	14	NIC	ENSMUSG00000042328.14	novel	3345	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	25.6563543924319	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490948	112526280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_112490989_112491909_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
transcript_104762.nnic	chr5	+	3164	14	NNC	ENSMUSG00000042328.14	novel	2836	14	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	25.1993237440961	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490969	112526280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_112491367_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
transcript_104764.nnic	chr5	+	3618	14	NNC	ENSMUSG00000042328.14	novel	3345	14	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	24.7453300836086	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490977	112526280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_112491030_112491607_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
transcript_104775.nic	chr5	+	446	2	ISM	ENSMUSG00000042328.14	ENSMUST00000112359.9	3345	14	-15	34021	-15	-354	5prime_fragment	FALSE	canonical	3	34	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTTTGAAGTATCTGCTA	NA	False	NA	NA	False	NA	NA	NA	112490933	112492259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_112491030_112491909
transcript_104778.known	chr5	-	6533	21	FSM	ENSMUSG00000042249.12	ENSMUST00000065167.9	6533	21	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	10.5322124931089	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTTGAGGCTGACATC	539	False	NA	-4	True	AATAAA	-18	NA	113163380	113058347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113085574_113085683_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
transcript_10478.known	chr10	-	4791	41	FSM	ENSMUSG00000001435.16	ENSMUST00000105409.8	4791	41	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_40	66.1190923637038	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGACTTCCTGCCCTTCCTC	NA	False	NA	4	True	AATAAA	-39	NA	76949539	76888849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894665_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_76948792
transcript_104787.known	chr5	-	1570	6	FSM	ENSMUSG00000042249.12	ENSMUST00000197776.2	1570	6	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	10.1862652625975	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	550	False	NA	NA	False	AGTAAA	-42	NA	113163369	113108409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
transcript_104789.nic	chr5	-	757	4	ISM	ENSMUSG00000029352.15	ENSMUST00000076069.13	816	5	660	0	384	0	3prime_fragment	FALSE	canonical	3	12	junction_2	4.78423336480244	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTGTGTCACTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	113227873	113223704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_113223938_113225400_113225544_113226248_113226382_113227625
transcript_104791.known	chr5	-	1419	3	FSM	ENSMUSG00000029352.15	ENSMUST00000155042.8	1419	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACAAATTCAAGAGTT	NA	False	NA	NA	False	AAAAAG	-33	NA	113228257	113224889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113225544_113226248_113226382_113227625
transcript_104797.known	chr5	-	5161	25	FSM	ENSMUSG00000042216.14	ENSMUST00000048112.13	5161	25	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_24	23.4519307425968	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGGTCTGGTTATTTGT	NA	False	NA	0	True	AATATA	-19	NA	113458652	113391085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113430457_113430583_113432845_113432978_113433144_113433291_113433492_113433561_113434640_113434794_113435090_113435254_113436689_113436766_113458413_113458458_113458539
transcript_104799.known	chr5	-	2274	18	FSM	ENSMUSG00000042216.14	ENSMUST00000112325.8	2274	18	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_17	27.6471839796917	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGTCTCCTTGGAACC	NA	False	NA	NA	False	AGTAAA	-17	NA	113458605	113413539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113430457_113430583_113432845_113432978_113433144_113433291_113433492_113433561_113434640_113434794_113435090_113435254_113436689_113436766_113458413_113458458_113458539
transcript_104802.known	chr5	-	4339	16	FSM	ENSMUSG00000042216.14	ENSMUST00000057209.12	4339	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_5	17.3674024156368	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATAACCGTGGGTCTG	NA	False	NA	-9	True	AATATA	-10	NA	113428467	113391094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
transcript_104808.known	chr5	-	1102	5	FSM	ENSMUSG00000042216.14	ENSMUST00000112324.2	1102	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	10.6389614154766	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGAGTGGTGTCTGTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	113428453	113421817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
transcript_104811.known	chr5	+	4302	9	FSM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	15.7276627316331	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGTTGTGTATGGCAT	NA	False	NA	14	True	ATTAAA	-24	NA	113638312	113727786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_113638807_113688483_113689396_113696409_113696525_113698961_113699147_113708697_113708820_113710299_113710475_113712079_113712245_113715323_113715525_113725853
transcript_104813.known	chr5	+	2809	1	FSM	ENSMUSG00000063430.10	ENSMUST00000138757.3	2809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113638198	113641007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_113638200_113641000
transcript_104829.nnic	chr5	-	2497	4	NNC	ENSMUSG00000042190.13	novel	2882	3	NA	NA	-11358	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.68178700572909	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTTGACGTCTTGCTTG	5586	False	NA	-9	True	CATAAA	-42	NA	113799845	113750423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_113751039_113751452_113753002_113754588_113754678_113799601
transcript_104834.nnic	chr5	-	2920	3	NNC	ENSMUSG00000042190.13	novel	2882	3	NA	NA	-11358	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	2	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTGCTTGTTGTTTTCA	5586	False	NA	0	True	NA	NA	NA	113799845	113750414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_113753002_113754588_113754678_113799601
transcript_104835.known	chr5	-	2882	3	FSM	ENSMUSG00000042190.13	ENSMUST00000047936.13	2882	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	3	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTGCTTGTTGTTTTCA	NA	False	NA	0	True	NA	NA	NA	113788487	113750414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113753002_113754588_113754678_113788281
transcript_104836.known	chr5	+	3133	3	FSM	ENSMUSG00000053334.7	ENSMUST00000065698.7	3133	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	4.5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACATTGCGTTGTCTCA	715	False	NA	NA	False	AATAAA	-11	NA	113873863	113878661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_113874111_113874881_113875234_113876127
transcript_104843.known	chr5	-	4447	19	FSM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_17	27.7084133944819	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGTGCATTGCAGCT	NA	False	NA	-16	True	ATTAAA	-16	NA	113910571	113880506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
transcript_104844.nic	chr5	-	3647	19	NIC	ENSMUSG00000018974.8	novel	4447	19	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_15	91.6478768621147	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGTGCATTGCAGCT	NA	False	NA	-16	True	ATTAAA	-16	NA	113909717	113880506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897388_113899155_113899341_113900889_113900995_113902133_113902261_113909381
transcript_104855.nic	chr5	-	2735	15	ISM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	-8	4244	-8	-920	5prime_fragment	FALSE	canonical	3	367	junction_13	24.8907818360164	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGAGGTGCCGACAAGCGC	NA	False	NA	NA	False	AAAAAG	-11	NA	113910579	113884750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
transcript_104865.known	chr5	+	957	5	FSM	ENSMUSG00000025825.13	ENSMUST00000026937.12	957	5	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_1	28.9179874818425	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTCTCGACTCCCTCA	3595	False	NA	NA	False	AATAAA	-30	NA	113910808	113916349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831_113914911_113915893
transcript_104866.known	chr5	+	1116	5	FSM	ENSMUSG00000025825.13	ENSMUST00000112312.8	1116	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	304.763330307306	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGTACTGAACCTGA	3650	False	NA	NA	False	AATAAA	-15	NA	113910863	113916334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831_113915140_113915893
transcript_104867.known	chr5	+	489	5	FSM	ENSMUSG00000025825.13	ENSMUST00000134881.2	489	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	300.515390620847	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTGCTTCCTGCCACCC	3872	False	NA	NA	False	NA	NA	NA	113911085	113916006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_113911158_113912323_113912438_113913278_113913390_113914831_113914911_113915893
transcript_104868.known	chr5	+	1395	4	FSM	ENSMUSG00000025825.13	ENSMUST00000112311.8	1395	4	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_1	22.86676384819	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGAAGCTGTCTACCTT	3650	False	NA	NA	False	AATAAA	-21	NA	113910863	113915859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831
transcript_104870.known	chr5	+	773	4	FSM	ENSMUSG00000025825.13	ENSMUST00000123616.8	773	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	321.733844453248	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTCCCACACTGCTAAG	3665	False	NA	NA	False	NA	NA	NA	113910878	113915100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_113911158_113912323_113912438_113913278_113913390_113914831
transcript_104874.known	chr5	+	388	3	FSM	ENSMUSG00000025825.13	ENSMUST00000145778.8	388	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	21.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGCCGTTGATTACAC	3852	False	NA	NA	False	NA	NA	NA	113911065	113916075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_113911158_113912323_113912438_113915893
transcript_104875.nic	chr5	+	1510	2	ISM	ENSMUSG00000025825.13	ENSMUST00000112311.8	1395	4	-11	2179	-11	-1420	intron_retention	FALSE	canonical	3	687	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAGAAAAAAGCCAGTTT	3639	False	NA	NA	False	NA	NA	NA	113910852	113913680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_113911006_113912323
transcript_104878.known	chr5	-	2242	2	FSM	ENSMUSG00000054675.6	ENSMUST00000067853.6	2242	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTCTGGATTATCTGCA	6692	False	NA	NA	False	AATAAA	-17	NA	113938577	113931789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113933815_113938360
transcript_104879.known	chr5	-	1855	2	FSM	ENSMUSG00000048163.14	ENSMUST00000100874.6	1855	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTCCTTCATGTGCCT	6278	False	NA	NA	False	AATAAA	-20	NA	113968562	113956607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113958310_113968409
transcript_104885.known	chr5	-	3491	11	FSM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_1	46.3810306051946	965	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	GATAAA	-15	NA	114046819	113980496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
transcript_104903.known	chr5	-	8436	15	FSM	ENSMUSG00000042121.17	ENSMUST00000159592.8	8436	15	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_13	43.65589003438	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTATGCTATGCTTTG	NA	False	NA	-11	True	AATAAA	-19	NA	114131955	114075154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114127706_114127748_114131724
transcript_104907.nnic	chr5	-	3980	14	NNC	ENSMUSG00000042121.17	novel	3164	14	NA	NA	-6372	513	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_13	82.9598177489967	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCGTTCTGAGAACAATG	NA	False	NA	-13	True	TATAAA	-15	NA	114111189	114079739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114110788
transcript_104911.known	chr5	-	5584	14	FSM	ENSMUSG00000042121.17	ENSMUST00000112298.10	5584	14	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_8	101.835346858655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114131840	114077825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114127706_114127748_114131724
transcript_104913.nnic	chr5	-	3401	11	NNC	ENSMUSG00000042121.17	novel	3164	14	NA	NA	4903	513	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_10	119.866634223207	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCGTTCTGAGAACAATG	NA	False	NA	-13	True	TATAAA	-15	NA	114099914	114079739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114099801
transcript_104923.known	chr5	-	3379	16	FSM	ENSMUSG00000042078.15	ENSMUST00000058472.13	3379	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	7.27552976307109	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGTCGACTAACTTGTT	NA	False	NA	53	True	TTTAAA	-39	NA	114229631	114164970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866_114180993_114183628_114183693_114192537_114192663_114198118_114198191_114201085_114201185_114202928_114203015_114203586_114203748_114229212
transcript_104927.known	chr5	+	4604	13	FSM	ENSMUSG00000029592.12	ENSMUST00000031588.12	4604	13	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	7.25095779113966	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTCTTTTTTAACAGTG	NA	False	NA	NA	False	NA	NA	NA	114238375	114262781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249929_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
transcript_104930.nic	chr5	+	2112	13	NIC	ENSMUSG00000029592.12	novel	4604	13	NA	NA	-43	1092	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	11.3293497901101	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTTTGTTTCCCATTGT	NA	False	NA	NA	False	ATTAAA	-22	NA	114238332	114260249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249932_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
transcript_104931.nic	chr5	+	2851	13	NIC	ENSMUSG00000029592.12	novel	4604	13	NA	NA	-43	-1793	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	11.3293497901101	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTCTTCTGGTCTAAGG	NA	False	NA	17	True	ATTAAA	-19	NA	114238332	114260988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249932_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
transcript_104932.nic	chr5	+	3430	13	NIC	ENSMUSG00000029592.12	novel	4604	13	NA	NA	-43	-1214	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	11.3293497901101	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCAAGTGCGGTGCTTTA	NA	False	NA	8	True	AATAAA	-19	NA	114238332	114261567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249932_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
transcript_104933.known	chr5	+	1303	12	FSM	ENSMUSG00000029592.12	ENSMUST00000200119.3	1303	12	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	11.7170498077949	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCAGCCCTGCCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	114238420	114259157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249932_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092
transcript_104936.nic	chr5	-	2368	9	ISM	ENSMUSG00000042078.15	ENSMUST00000134790.8	1682	15	22217	-1160	-120	-55	3prime_fragment	FALSE	canonical	3	12	junction_8	2.91279504943276	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATGGGATTTAAATCT	NA	False	NA	-2	True	ATTAAA	-17	NA	114181062	114165025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866
transcript_104944.nnic	chr5	-	1154	5	NNC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-2563	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	266.303750442986	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	5415	False	NA	-2	True	AATAAA	-22	NA	114268842	114261986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_114262316_114263592_114263792_114265586_114265831_114267171_114267228_114268516
transcript_104946.known	chr5	-	1073	4	FSM	ENSMUSG00000044339.13	ENSMUST00000053657.13	1073	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	257.69534122465	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	8020	False	NA	-2	True	AATAAA	-22	NA	114266237	114261986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114265936
transcript_104947.nic	chr5	-	1061	4	NIC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	238.844905511692	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	7947	False	NA	-2	True	AATAAA	-22	NA	114266310	114261986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_114262316_114263592_114263792_114265586_114265831_114266021
transcript_104948.known	chr5	-	899	4	FSM	ENSMUSG00000044339.13	ENSMUST00000112279.2	899	4	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_3	133.312498372141	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGTATTTGGGGGGGG	7978	False	NA	-11	True	AATAAA	-13	NA	114266279	114261995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114266143
transcript_104949.nnic	chr5	-	1101	4	NNC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-2566	0	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_3	211.98480029369	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	5412	False	NA	-2	True	AATAAA	-22	NA	114268845	114261986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_114262316_114263592_114263792_114265586_114265831_114268516
transcript_104953.known	chr5	+	1985	7	FSM	ENSMUSG00000029591.15	ENSMUST00000031587.13	1985	7	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	117.255656106172	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCCGACTATTCTTCA	NA	False	NA	23	True	AATAAA	-19	NA	114268446	114277384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114268687_114269379_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
transcript_104958.known	chr5	+	2136	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	0	0	0	0	multi-exon	FALSE	canonical	3	690	junction_3	32.487536071546	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGTGCCGACTATTCTT	NA	False	NA	21	True	AATAAA	-17	NA	114268986	114277382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
transcript_104968.nic	chr5	+	2000	2	NIC	ENSMUSG00000042010.17	novel	6680	41	NA	NA	-55	0	intron_retention	FALSE	canonical	3	86	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTCTGGCCTTGATTTA	5505	False	NA	7	True	AATAAA	-17	NA	114386338	114388820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_114387073_114387554
transcript_104969.known	chr5	-	3016	10	FSM	ENSMUSG00000042002.12	ENSMUST00000044790.12	3016	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	3.91893157523298	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTGACTCAGTGTGGA	NA	False	NA	-2	True	AATAAA	-13	NA	114411868	114392224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114393812_114394619_114395013_114396568_114396777_114397810_114397908_114398410_114398539_114398926_114399047_114399135_114399264_114401069_114401216_114411033_114411123_114411748
transcript_104971.known	chr5	+	3545	32	FSM	ENSMUSG00000066952.12	ENSMUST00000169347.6	3545	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.35253259956365	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACCCAATTTAGGCGCAC	NA	False	NA	NA	False	NA	NA	NA	114427226	114501296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114427446_114452965_114453128_114455643_114455760_114457732_114457932_114458707_114458789_114461326_114461507_114464894_114464994_114466754_114466869_114467237_114467310_114468193_114468314_114470749_114470818_114472146_114472253_114474291_114474373_114476222_114476315_114480168_114480264_114483951_114483999_114485457_114485539_114486420_114486527_114487580_114487699_114489697_114489812_114491886_114491964_114493252_114493322_114494989_114495075_114495979_114496140_114496951_114497036_114497571_114497666_114497804_114497861_114498545_114498682_114499103_114499175_114499287_114499386_114500169_114500270_114501051
transcript_104972.known	chr5	-	1026	7	FSM	ENSMUSG00000001098.16	ENSMUST00000001125.6	1026	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	38.0379927032025	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCCTCCCTCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	114518544	114503682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507092_114508119_114508290_114512956_114513171_114518486
transcript_104976.known	chr5	+	5194	28	FSM	ENSMUSG00000029577.14	ENSMUST00000074002.12	5194	28	0	0	0	0	multi-exon	TRUE	canonical	3	241	junction_19	27.3486858419916	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCTGTTCTGGTTTCTAC	NA	False	NA	21	True	ATTAAA	-21	NA	114518667	114559230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114519037_114522375_114522464_114525154_114525340_114525441_114525563_114526783_114526844_114527125_114527231_114528450_114528548_114530158_114530245_114531137_114531221_114536468_114536575_114536822_114536944_114537850_114538029_114539328_114539499_114540582_114540751_114542600_114542773_114544232_114544352_114544806_114544922_114545604_114545705_114546157_114546278_114549079_114549257_114549364_114549476_114550226_114550365_114550482_114550549_114550911_114550971_114553262_114553446_114553637_114553750_114556598_114556692_114557538
transcript_104984.known	chr5	+	4888	27	FSM	ENSMUSG00000029577.14	ENSMUST00000130169.8	4888	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	60.982985792867	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTCTGTTCTGGTTTCTA	NA	False	NA	20	True	ATTAAA	-20	NA	114518886	114559229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114519037_114522375_114522464_114525154_114525340_114525441_114525563_114526783_114526844_114527125_114527231_114528450_114528548_114531137_114531221_114536468_114536575_114536822_114536944_114537850_114538029_114539328_114539499_114540582_114540751_114542600_114542773_114544232_114544352_114544806_114544922_114545604_114545705_114546157_114546278_114549079_114549257_114549364_114549476_114550226_114550365_114550482_114550549_114550911_114550971_114553262_114553446_114553637_114553750_114556598_114556692_114557538
transcript_105004.known	chr5	-	3020	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_1	19.5604032422647	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTGTGGCTCATCTCTC	NA	False	NA	2	True	AATAAA	-36	NA	114582121	114569094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
transcript_105007.known	chr5	-	1277	8	FSM	ENSMUSG00000029575.18	ENSMUST00000123256.3	1277	8	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_4	16.4738506458581	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCCAGGGAGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	114582053	114572688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
transcript_105015.nic	chr5	+	1739	12	NIC	ENSMUSG00000041939.15	novel	1660	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	45.2173812847221	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582325	114598652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
transcript_105016.known	chr5	+	1602	11	FSM	ENSMUSG00000041939.15	ENSMUST00000112239.9	1602	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	36.3257484437692	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCTCTTGCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	114582346	114598538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588301_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
transcript_105018.known	chr5	+	1660	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_10	13.5410487038486	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582366	114598652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
transcript_105021.known	chr5	+	1049	8	FSM	ENSMUSG00000041939.15	ENSMUST00000137167.8	1049	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	54.8813190773825	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582329	114591211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940
transcript_105023.nic	chr5	+	1022	7	ISM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	-48	7441	-11	0	5prime_fragment	FALSE	canonical	3	117	junction_1	10.1063786238637	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582318	114591211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940
transcript_105024.known	chr5	+	2930	3	FSM	ENSMUSG00000041930.8	ENSMUST00000043650.8	2930	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTCAGCTGTGGGTT	NA	False	NA	12	True	AAGAAA	-17	NA	114706076	114751281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114706486_114732401_114732529_114748887
transcript_105029.known	chr5	-	3226	16	FSM	ENSMUSG00000014158.13	ENSMUST00000112225.8	3226	16	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_12	3.46153466286591	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGGGTGAGGTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	114796479	114760214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114760872_114761668_114761791_114763071_114763200_114764804_114765122_114766653_114766721_114766868_114767035_114768010_114768085_114768482_114768576_114768804_114768964_114771195_114771376_114772576_114772876_114773507_114773649_114774370_114774524_114778184_114778358_114782574_114782995_114796402
transcript_105033.known	chr5	-	944	5	FSM	ENSMUSG00000011884.14	ENSMUST00000112214.8	944	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	605.262081663803	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAGGAACTCAGCTCAGG	NA	False	NA	NA	False	NA	NA	NA	114829002	114808143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114808651_114812114_114812247_114814396_114814460_114815681_114815741_114828819
transcript_105034.known	chr5	-	1762	5	FSM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	0	0	0	0	multi-exon	TRUE	canonical	3	1353	junction_4	27.6541136180497	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCTGTGGCGCTTGAT	NA	False	NA	3	True	AATAAA	-29	NA	114829045	114807458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
transcript_105040.known	chr5	+	2882	13	FSM	ENSMUSG00000002486.16	ENSMUST00000094441.11	2882	13	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_2	9.3392838174146	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGCTGTCACTGCTGC	NA	False	NA	15	True	AGTAAA	-18	NA	114845820	114860388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114846022_114846714_114846900_114847367_114847579_114849313_114849371_114851484_114851554_114852688_114852863_114853613_114853727_114853895_114853963_114855497_114855671_114856439_114856522_114857639_114857826_114858185_114858330_114859168
transcript_105044.known	chr5	+	3138	12	FSM	ENSMUSG00000002486.16	ENSMUST00000124242.5	3138	12	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_2	9.39491686019186	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGCTGTCACTGCTGC	NA	False	NA	15	True	AGTAAA	-18	NA	114845924	114860388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114846022_114846714_114846900_114847367_114847579_114849313_114849371_114851484_114851554_114852688_114852863_114853613_114853727_114853895_114853963_114855497_114855671_114856439_114856522_114857639_114858330_114859168
transcript_105050.nic	chr5	+	734	5	ISM	ENSMUSG00000002486.16	ENSMUST00000094441.11	2882	13	-14	8838	-14	-409	5prime_fragment	FALSE	canonical	2	32	junction_2	14.2016724367238	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTATGGAATGTGTGACC	NA	False	NA	NA	False	GATAAA	-32	NA	114845806	114851550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_114846022_114846714_114846900_114847367_114847579_114849313_114849371_114851484
transcript_105054.nic	chr5	-	3188	20	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-174	0	combination_of_known_junctions	FALSE	canonical	3	114	junction_6	47.232729625996	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGATGTCTCCATAATGT	NA	False	NA	-2	True	TATAAA	-14	NA	114911730	114867635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_105055.known	chr5	-	2984	20	FSM	ENSMUSG00000041890.18	ENSMUST00000086564.11	2984	20	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_12	54.5305322490843	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGATGTCTCCATAATGT	NA	False	NA	-2	True	TATAAA	-14	NA	114911523	114867635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_105060.nic	chr5	-	2801	20	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-27	55	combination_of_known_junctions	FALSE	canonical	3	114	junction_6	47.232729625996	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAGCAGCAGCAGCAGCA	NA	False	NA	NA	False	AAGAAA	-27	NA	114911583	114867875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_105068.known	chr5	-	5032	19	FSM	ENSMUSG00000041890.18	ENSMUST00000112185.9	5032	19	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_6	46.75943160951	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTGCCCCCTCTAGTT	NA	False	NA	-3	True	AATAAA	-20	NA	114911556	114865467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_105074.nic	chr5	-	2651	19	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-24	55	combination_of_known_junctions	FALSE	canonical	3	71	junction_11	54.7531215638675	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAGCAGCAGCAGCAGCA	NA	False	NA	NA	False	AAGAAA	-27	NA	114911580	114867875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_105089.known	chr5	-	4938	18	FSM	ENSMUSG00000041890.18	ENSMUST00000043283.14	4938	18	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	65.8330172418791	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTGCCCCCTCT	NA	False	NA	-7	True	AATAAA	-16	NA	114911553	114865471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_105100.known	chr5	+	3717	15	FSM	ENSMUSG00000041870.18	ENSMUST00000102578.11	3717	15	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_6	30.6590866112599	822	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGAGTTTCATTTCTC	846	False	NA	29	True	AGTAAA	-19	NA	114912737	114943883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_114913386_114924001_114924135_114924745_114924871_114927368_114927415_114929324_114929469_114930160_114930351_114933741_114933809_114934894_114934977_114935913_114935976_114936581_114936713_114937444_114937603_114938765_114938874_114939716_114939878_114941617_114941686_114942289
transcript_105119.known	chr5	-	1333	2	FSM	ENSMUSG00000072694.9	ENSMUST00000112160.4	1333	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGCTGTTCTGTGC	719	False	NA	0	True	ATTAAA	-23	NA	114952037	114946256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114947393_114951840
transcript_105120.known	chr5	-	579	2	FSM	ENSMUSG00000072694.9	ENSMUST00000061251.6	579	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTTGGCGTCCTTCT	750	False	NA	-3	True	NA	NA	NA	114952006	114950853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114951267_114951840
transcript_105121.known	chr5	-	420	2	FSM	ENSMUSG00000072694.9	ENSMUST00000100850.6	420	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTTATCTATGCTCA	9616	False	NA	NA	False	NA	NA	NA	114961506	114960499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_114960787_114961373
transcript_105122.known	chr5	+	2181	6	FSM	ENSMUSG00000041827.16	ENSMUST00000112143.4	2181	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.38230690505755	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGTCCTCATTTGTCAC	7858	False	NA	6	True	NA	NA	NA	115061322	115075974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115061669_115066081_115066365_115067898_115068063_115070781_115071024_115073979_115074128_115074976
transcript_105127.known	chr5	-	3191	10	FSM	ENSMUSG00000029556.13	ENSMUST00000031535.12	3191	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	4.10960933531265	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGAAGCTTCCTGACTGT	NA	False	NA	1	True	AGTAAA	-15	NA	115109126	115087038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115088245_115088752_115088898_115088984_115089104_115090637_115090830_115091385_115091588_115091697_115091847_115093308_115093551_115093874_115094062_115098074_115098275_115108577
transcript_105128.nnic	chr5	-	2815	10	NNC	ENSMUSG00000029556.13	novel	3191	10	NA	NA	-2267	0	at_least_one_novel_splicesite	TRUE	canonical	1	6	junction_9	4.34897462017354	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGAAGCTTCCTGACTGT	7891	False	NA	1	True	AGTAAA	-15	NA	115111420	115087038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_115088245_115088752_115088898_115088984_115089104_115090637_115090830_115091385_115091588_115091697_115091847_115093308_115093551_115093874_115094062_115098074_115098275_115111247
transcript_105134.known	chr5	+	2607	6	FSM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_3	24.1909073827337	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGGATGGTGGTCCACA	NA	False	NA	NA	False	ATTAAA	-16	NA	115080216	115087842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221_115085313_115085740
transcript_105139.known	chr5	+	368	3	FSM	ENSMUSG00000029559.16	ENSMUST00000140090.2	368	3	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGGAAAAGAAAGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	115080289	115084276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115080415_115083844_115083888_115084076
transcript_105141.known	chr5	-	294	1	FSM	ENSMUSG00000072692.8	ENSMUST00000124641.2	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCAGTCATAAA	NA	False	NA	-52	True	NA	NA	NA	115241580	115241286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115241300_115241600
transcript_105144.known	chr5	-	1870	10	FSM	ENSMUSG00000029545.14	ENSMUST00000031524.11	1870	10	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_3	13.7822573362984	1805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9774	False	NA	-4	True	AATAAA	-18	NA	115257405	115248357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
transcript_105148.known	chr5	-	2023	9	FSM	ENSMUSG00000029545.14	ENSMUST00000131726.8	2023	9	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_3	13.6106575888162	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9833	False	NA	-4	True	AATAAA	-18	NA	115257346	115248357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
transcript_105150.known	chr5	-	3659	5	FSM	ENSMUSG00000046562.6	ENSMUST00000060798.6	3659	5	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_1	7.58287544405155	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCCTGATTGGGCCT	NA	False	NA	10	True	AATAAA	-27	NA	115273034	115260608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115263560_115265069_115265243_115265360_115265473_115268525_115268640_115272725
transcript_105152.known	chr5	-	1217	2	FSM	ENSMUSG00000046562.6	ENSMUST00000153403.2	1217	2	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAAACCCCAAAAC	NA	False	NA	NA	False	ATTAAA	-8	NA	115272984	115267681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115268640_115272725
transcript_105153.known	chr5	-	5955	5	FSM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	0	0	0	0	multi-exon	FALSE	canonical	3	1139	junction_2	31.3249102153542	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCGTGTTGAGAGTGAATT	4724	False	NA	-3	True	AATAAA	-16	NA	115296238	115281039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861
transcript_105163.known	chr5	-	840	7	FSM	ENSMUSG00000029544.17	ENSMUST00000145197.9	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	87.9837421850701	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCCTCCGCACTGTGAA	10018	False	NA	NA	False	NA	NA	NA	115324115	115307029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318846_115319031_115324070
transcript_105166.nnic	chr5	-	1122	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-2714	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	79.358931444419	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	7442	False	NA	-1	True	AATAAA	-20	NA	115327081	115306747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115326852
transcript_105167.known	chr5	-	1621	6	FSM	ENSMUSG00000029544.17	ENSMUST00000112113.8	1621	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	70.6693710174358	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	8763	False	NA	-1	True	AATAAA	-20	NA	115332440	115306747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115331712
transcript_105180.known	chr5	-	3112	17	FSM	ENSMUSG00000041740.17	ENSMUST00000112096.9	3112	17	0	0	0	0	multi-exon	FALSE	canonical	3	1263	junction_14	135.987361545108	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCTTCCCGACAAGCAT	NA	False	NA	-20	True	AATAAA	-20	NA	115410954	115379828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395233_115398177_115398375_115410315
transcript_105203.known	chr5	+	1025	6	FSM	ENSMUSG00000060152.15	ENSMUST00000081497.13	1025	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	325.291254109298	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCCCCGTGTGGTTCGAG	NA	False	NA	36	True	AATAAA	-38	NA	115373894	115379050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115373944_115375882_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378697
transcript_105207.known	chr5	+	575	4	FSM	ENSMUSG00000060152.15	ENSMUST00000128830.5	575	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	380.536755415587	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAATAAACATTCCTAAA	NA	False	NA	-11	True	NA	NA	NA	115376093	115379003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115376129_115378220_115378371_115378531_115378616_115378697
transcript_105209.nic	chr5	-	742	2	ISM	ENSMUSG00000041740.17	ENSMUST00000112096.9	3112	17	-39	18482	-36	-4031	5prime_fragment	FALSE	canonical	3	1360	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATTTTAGCAACCAGT	NA	False	NA	NA	False	NA	NA	NA	115410993	115398310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_115398375_115410315
transcript_105210.known	chr5	-	2276	1	FSM	ENSMUSG00000041740.17	ENSMUST00000200923.2	2276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAGCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115410954	115408678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115408700_115411000
transcript_105212.known	chr5	+	2037	7	FSM	ENSMUSG00000041733.11	ENSMUST00000040421.11	2037	7	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_4	23.5442845152137	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGATGTCACTTTTTG	NA	False	NA	21	True	AATAAA	-19	NA	115417724	115435031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115417974_115421624_115421775_115422449_115422672_115428992_115429100_115432885_115432975_115433724_115433837_115433923
transcript_105218.known	chr5	+	1217	1	FSM	ENSMUSG00000041733.11	ENSMUST00000201429.2	1217	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	115417753	115418970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115417800_115419000
transcript_105220.known	chr5	-	2030	3	FSM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	210.5	2085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCTGGCTCAAAAACAAAAT	NA	False	NA	NA	False	AATAAA	-33	NA	115439058	115435168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115436893_115438571_115438710_115438890
transcript_105221.known	chr5	-	478	2	FSM	ENSMUSG00000009013.6	ENSMUST00000125959.2	478	2	0	0	0	0	multi-exon	FALSE	canonical	3	4205	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGAGCAGTTCCCCCTGCT	NA	False	NA	NA	False	NA	NA	NA	115438993	115438334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115438710_115438890
transcript_105222.known	chr5	-	729	2	FSM	ENSMUSG00000009013.6	ENSMUST00000112090.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTCTAGTCCATACT	NA	False	NA	-4	True	AGTAAA	-17	NA	115438971	115436563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115436893_115438571
transcript_105226.known	chr5	+	1162	4	FSM	ENSMUSG00000029538.15	ENSMUST00000031513.14	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_1	69.0700127889569	999	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCGTGCAGTTGTCTTTG	134	False	NA	39	True	AATATA	-18	NA	115465235	115471139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115465559_115468556_115468718_115470175_115470349_115470634
transcript_105230.known	chr5	-	1797	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	3.5	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGCTGATTTTTTAC	9709	False	NA	-1	True	NA	NA	NA	115479237	115471297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115472654_115473525_115473630_115478900
transcript_105234.known	chr5	+	1088	2	FSM	ENSMUSG00000029535.5	ENSMUST00000031508.5	1088	2	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	0	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCACTTTATTGAGCAT	2414	False	NA	44	True	AATAAA	-36	NA	115479283	115481628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115479477_115480733
transcript_105235.known	chr5	-	571	3	FSM	ENSMUSG00000041697.10	ENSMUST00000040154.10	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	7177	junction_2	62.5	2675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGACGGTACGATTTTAT	4854	False	NA	-26	True	AATAAA	-26	NA	115487040	115483700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115483986_115486623_115486767_115486897
transcript_105236.known	chr5	-	620	2	FSM	ENSMUSG00000041697.10	ENSMUST00000137766.2	620	2	0	0	0	0	multi-exon	FALSE	canonical	3	7302	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGGTCCGTGAGCTGG	4921	False	NA	-41	True	AATAAA	-11	NA	115486973	115483715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115483986_115486623
transcript_105241.known	chr5	+	3133	15	FSM	ENSMUSG00000054256.12	ENSMUST00000150779.8	3133	15	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_12	14.3358050392173	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTTATTCATGTGTG	2389	False	NA	15	True	AATAAA	-15	NA	115567657	115593757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115567866_115568035_115568077_115568681_115568764_115568862_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588845_115589034_115589515_115589580_115591884
transcript_105242.nic	chr5	+	3108	15	NIC	ENSMUSG00000054256.12	novel	3133	15	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_12	16.062378404209	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTTATTCATGTGTG	2381	False	NA	15	True	AATAAA	-15	NA	115567649	115593757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_115567866_115568035_115568077_115568681_115568764_115568862_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588878_115589034_115589515_115589580_115591884
transcript_105245.nic	chr5	+	3078	14	NIC	ENSMUSG00000054256.12	novel	3133	15	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_10	24.7218849935262	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTTATTCATGTGTG	2387	False	NA	15	True	AATAAA	-15	NA	115567655	115593757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_115567866_115568035_115568077_115568681_115568764_115568862_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115588273_115588343_115588845_115589034_115589515_115589580_115591884
transcript_105247.nnic	chr5	+	3001	13	Fusion	ENSMUSG00000087292.2_ENSMUSG00000054256.12	novel	806	9	NA	NA	-8	0	multi-exon	FALSE	canonical	2	9	junction_2	31.6227766016838	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTTATTCATGTGTG	4755	False	NA	15	True	AATAAA	-15	NA	115497128	115593757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr5_+_115497328_115548673_115548759_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588845_115589034_115589515_115589580_115591884
transcript_105248.nnic	chr5	+	2968	13	Fusion	ENSMUSG00000087292.2_ENSMUSG00000054256.12	novel	806	9	NA	NA	-8	0	multi-exon	FALSE	canonical	2	9	junction_2	32.3525501313266	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTTATTCATGTGTG	4755	False	NA	15	True	AATAAA	-15	NA	115497128	115593757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr5_+_115497328_115548673_115548759_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188_115585246_115588273_115588343_115588878_115589034_115589515_115589580_115591884
transcript_105265.nnic	chr5	+	2240	5	NNC	ENSMUSG00000054256.12	novel	3133	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	40.6471093683179	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTTATTCATGTGTG	2387	False	NA	15	True	AATAAA	-15	NA	115567655	115593757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_115567741_115588312_115588343_115588845_115589034_115589515_115589580_115591884
transcript_105268.nnic	chr5	+	814	5	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1175	0	at_least_one_novel_splicesite	FALSE	canonical	3	2118	junction_4	157.856540884437	354	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115603145	115612781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_115603279_115604200_115604380_115608840_115609001_115610051_115610180_115612567
transcript_105272.nnic	chr5	+	654	4	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1175	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_2	947.073738769409	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115603145	115612781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_115603279_115604200_115604380_115610051_115610180_115612567
transcript_105277.known	chr5	-	1794	5	FSM	ENSMUSG00000029524.17	ENSMUST00000112066.2	1794	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	4.96865172858795	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTGTGGACTGTGAAC	9020	False	NA	NA	False	AATAAA	-19	NA	115622784	115616068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115616468_115617660_115617872_115618289_115618585_115620682_115621178_115622390
transcript_105281.known	chr5	+	2667	12	FSM	ENSMUSG00000029528.20	ENSMUST00000086523.7	2667	12	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	97.41612200476	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGGCCCTTGACGACTTC	NA	False	NA	NA	False	NA	NA	NA	115644866	115693037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115644928_115682401_115682629_115682939_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689546_115689649_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
transcript_105286.known	chr5	+	3706	11	FSM	ENSMUSG00000029528.20	ENSMUST00000067268.15	3706	11	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_6	21.5722043379901	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATGTTATTTCTTGGGA	NA	False	NA	19	True	AATAAA	-23	NA	115644734	115694046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115644928_115682401_115682629_115682939_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
transcript_105297.known	chr5	+	1358	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	0	0	0	0	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCCAAGCCTGGCCTTT	NA	False	NA	3	True	ATTAAA	-14	NA	115697525	115701786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
transcript_10530.known	chr10	+	2309	6	FSM	ENSMUSG00000001436.16	ENSMUST00000144234.8	2309	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	43.968170305347	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTTGTGAGACACT	NA	False	NA	17	True	ATTAAA	-19	NA	76868517	76886266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_76868615_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
transcript_105307.known	chr5	+	8555	58	FSM	ENSMUSG00000041638.19	ENSMUST00000064454.12	8555	58	0	0	0	0	multi-exon	TRUE	canonical	2	352	junction_15	70.6565046091486	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGGAGTTTGTCATTTT	NA	False	NA	NA	False	AATAAA	-23	NA	115703312	115760713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115703366_115709467_115709571_115712637_115712702_115713223_115713356_115714178_115714288_115716950_115717050_115717134_115717270_115717693_115717763_115717845_115717955_115718563_115718639_115719061_115719191_115719548_115719600_115719839_115719939_115720322_115720497_115721456_115721610_115723864_115723958_115725847_115725924_115726034_115726195_115726992_115727183_115727259_115727385_115728303_115728483_115729032_115729127_115730123_115730238_115730367_115730567_115731635_115731792_115732091_115732274_115733051_115733133_115733351_115733496_115734914_115735043_115735124_115735315_115735432_115735504_115736759_115736926_115737130_115737326_115740444_115740692_115741271_115741394_115742068_115742184_115742876_115743057_115744531_115744753_115747287_115747357_115747524_115747664_115747749_115747947_115748080_115748224_115748866_115748985_115749082_115749299_115750646_115750812_115751414_115751577_115751782_115751876_115752134_115752279_115752389_115752660_115752919_115753034_115753427_115753659_115754409_115754604_115754692_115754808_115757355_115757453_115757710_115757860_115758202_115758311_115759559_115759779_115760083
transcript_105322.known	chr5	+	2224	15	FSM	ENSMUSG00000041638.19	ENSMUST00000141472.8	2224	15	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_9	39.4497872527307	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACCAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115703330	115722297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115703366_115709467_115709571_115712637_115712702_115713223_115713356_115714178_115714288_115716950_115717050_115717134_115717270_115717693_115717763_115717845_115717955_115718563_115718639_115719061_115719191_115719548_115719600_115719839_115719939_115720322_115720497_115721456
transcript_105326.known	chr5	+	1918	1	FSM	ENSMUSG00000041638.19	ENSMUST00000202584.2	1918	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	115703361	115705279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115703400_115705300
transcript_105327.known	chr5	-	768	1	FSM	ENSMUSG00000107121.2	ENSMUST00000201728.2	768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGACATTAGTTTTCC	NA	False	NA	NA	False	AATACA	-17	NA	115769875	115769107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115769100_115769900
transcript_10533.nnic	chr10	+	2269	6	NNC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	49.2178829288705	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTGTTGTGAGACAC	NA	False	NA	16	True	ATTAAA	-18	NA	76869004	76886265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_76869182_76874183_76874414_76877649_76878285_76878615_76878809_76880594_76880737_76885373
transcript_105330.known	chr5	+	966	6	FSM	ENSMUSG00000029518.16	ENSMUST00000138885.2	966	6	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	85.478418328839	487	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAGCCCTCCGTCCCAG	NA	False	NA	NA	False	NA	NA	NA	115770199	115784178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115770258_115775774_115775826_115778142_115778263_115781426_115781552_115781633_115781759_115783691
transcript_10534.known	chr10	+	2347	6	FSM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	40.1875602643405	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTGTTGTGAGACAC	NA	False	NA	16	True	ATTAAA	-18	NA	76869045	76886265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
transcript_105342.nnic	chr5	-	1976	3	NNC	ENSMUSG00000041609.17	novel	1874	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	16	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTGTGCCTCAGTTCCT	NA	False	NA	-3	True	AATAAA	-14	NA	115791045	115786235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_115787629_115789877_115789999_115790583
transcript_105343.known	chr5	-	1874	3	FSM	ENSMUSG00000041609.17	ENSMUST00000118576.8	1874	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	14.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTGTGCCTCAGTTCCT	NA	False	NA	-3	True	AATAAA	-14	NA	115791045	115786235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115787629_115789877_115789999_115790685
transcript_105344.known	chr5	-	1568	3	FSM	ENSMUSG00000041609.17	ENSMUST00000121746.8	1568	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCTTGTGCCTCAGTT	NA	False	NA	-6	True	AATAAA	-11	NA	115791040	115786238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_115787629_115789877_115789999_115790983
transcript_105378.known	chr5	+	4398	28	FSM	ENSMUSG00000029516.20	ENSMUST00000122877.8	4398	28	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_12	8.77441723450695	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTTGTTTTATTGA	NA	False	NA	NA	False	AATAAA	-16	NA	116083355	116136557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_116083531_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119708_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
transcript_10538.nic	chr10	+	2469	6	NIC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	44.1832547465666	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTGTTGTGAGACAC	NA	False	NA	16	True	ATTAAA	-18	NA	76869026	76886265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_76869285_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
transcript_105380.nic	chr5	+	2130	11	NIC	ENSMUSG00000029516.20	novel	1671	11	NA	NA	-46	428	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	11.3507708989302	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAACAGGTGACTCCCGA	8435	False	NA	NA	False	NA	NA	NA	115983290	116064196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_115983361_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
transcript_105382.nic	chr5	+	2191	11	NIC	ENSMUSG00000029516.20	novel	2335	10	NA	NA	-44	428	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	12.3971770980332	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAACAGGTGACTCCCGA	8437	False	NA	NA	False	NA	NA	NA	115983292	116064196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_115983361_115984342_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
transcript_105383.known	chr5	+	1671	11	FSM	ENSMUSG00000029516.20	ENSMUST00000147330.8	1671	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	12.568213874692	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	8481	False	NA	NA	False	CATAAA	-36	NA	115983336	116063761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_115983383_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
transcript_105387.nic	chr5	+	2020	9	NIC	ENSMUSG00000029516.20	novel	1671	11	NA	NA	-46	24	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	12.2212673238089	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCAATATCTGAAAGTT	8435	False	NA	NA	False	NA	NA	NA	115983290	116025684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_115983361_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712
transcript_105393.known	chr5	-	2026	8	FSM	ENSMUSG00000029513.15	ENSMUST00000111999.8	2026	8	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_7	27.0313499024932	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTTTTGACTCGGCACA	NA	False	NA	-4	True	AATAAA	-21	NA	116162567	116151648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149_116162319_116162423
transcript_105395.known	chr5	-	2089	7	FSM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_6	10.0788557551606	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGACTCGGCACATTTT	NA	False	NA	0	True	AATAAA	-25	NA	116162521	116151644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149
transcript_105397.known	chr5	-	794	7	FSM	ENSMUSG00000029513.15	ENSMUST00000148208.2	794	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	82.0135490161365	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAATGAGAGGCAGCCAT	NA	False	NA	NA	False	AAAAAG	-33	NA	116162510	116152708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158432_116158527_116159541_116159706_116162149_116162319_116162423
transcript_105398.known	chr5	-	1019	6	FSM	ENSMUSG00000029513.15	ENSMUST00000133098.9	1019	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	88.9570682970162	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGAGATGTCTACAGCC	NA	False	NA	NA	False	NA	NA	NA	116162415	116152493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158432_116158527_116159541_116159706_116162149
transcript_105402.known	chr5	-	1816	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	24.5	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTTCATTTAGCGA	NA	False	NA	0	True	AATAAA	-20	NA	116560923	116546549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_116547550_116553465_116553530_116560171
transcript_105403.known	chr5	-	2798	2	FSM	ENSMUSG00000063919.12	ENSMUST00000139425.2	2798	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTGTATATCTTTTTTT	6958	False	NA	NA	False	NA	NA	NA	116584903	116580490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_116582934_116584548
transcript_105407.known	chr5	+	3360	4	FSM	ENSMUSG00000086219.8	ENSMUST00000126959.5	3360	4	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	60.4281023659982	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGTCCTTCACAACCA	NA	False	NA	NA	False	NA	NA	NA	116576778	116603546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_116576898_116577427_116577496_116599782_116599863_116600453
transcript_105409.nnic	chr5	+	556	4	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	-43	481	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_3	120.252512101272	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116576735	116600638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_116576898_116577427_116577496_116599782_116599924_116600453
transcript_10541.nic	chr10	+	2463	6	NIC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	46.9535941116332	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTGTTGTGAGACAC	NA	False	NA	16	True	ATTAAA	-18	NA	76869027	76886265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_76869280_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
transcript_105410.nnic	chr5	+	3184	4	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	-43	-280	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_3	120.252512101272	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACTAGTTGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	116576735	116603266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_116576898_116577427_116577496_116599782_116599924_116600453
transcript_105411.known	chr5	+	562	3	FSM	ENSMUSG00000086219.8	ENSMUST00000133548.5	562	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTCATTCCGTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	116576778	116600157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_116576898_116577427_116577496_116599782
transcript_105414.known	chr5	-	1694	13	FSM	ENSMUSG00000066900.12	ENSMUST00000166397.3	1694	13	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	144.428375174533	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCTTGGGCTTCTAC	NA	False	NA	-23	True	AATAAA	-15	NA	117254178	117230501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_117230922_117231010_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
transcript_105420.known	chr5	-	2425	12	FSM	ENSMUSG00000066900.12	ENSMUST00000086471.12	2425	12	0	0	0	0	multi-exon	FALSE	canonical	3	565	junction_3	37.0610396664344	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCACGTGGTCTGTTTC	NA	False	NA	-4	True	GATAAA	-18	NA	117254063	117229744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
transcript_105442.nnic	chr5	+	3211	22	NNC	ENSMUSG00000061288.14	novel	4467	21	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	2.91916802361792	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAAAGAAAACAAAAA	1383	False	NA	21	True	ATTAAA	-27	NA	117258190	117411932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_117258405_117271749_117271841_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
transcript_105445.known	chr5	+	4467	21	FSM	ENSMUSG00000061288.14	ENSMUST00000111978.8	4467	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.74727137356323	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCCTGGCTGTGTTCTTGT	1386	False	NA	NA	False	AATAAA	-14	NA	117258193	117413282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_117258405_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
transcript_105447.nic	chr5	+	3142	21	NIC	ENSMUSG00000061288.14	novel	2172	8	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2.87402157263998	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAAAGAAAACAAAAA	7525	False	NA	21	True	ATTAAA	-27	NA	117264332	117411932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_117264569_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
transcript_105448.nnic	chr5	+	3035	20	NIC	ENSMUSG00000061288.14	novel	4467	21	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	2.94266542073566	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAAAGAAAACAAAAA	1383	False	NA	21	True	ATTAAA	-27	NA	117258190	117411932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_117258405_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
transcript_105454.nic	chr5	+	2095	16	ISM	ENSMUSG00000061288.14	ENSMUST00000111978.8	4467	21	-25	22559	-25	0	5prime_fragment	FALSE	canonical	0	0	junction_10	2.64491125665032	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAGAGGTAAGGGT	1361	False	NA	NA	False	NA	NA	NA	117258168	117390723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_117258405_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606
transcript_105462.known	chr5	-	1240	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	3104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGCGGGTATTTCCTT	NA	False	NA	-17	True	AATAAA	-15	NA	117425690	117420718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
transcript_105464.known	chr5	+	4236	10	FSM	ENSMUSG00000066894.15	ENSMUST00000111967.8	4236	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	6.48264539813992	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTATGGTCTTGAT	NA	False	NA	3	True	AATAAA	-19	NA	117457147	117493070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_117457569_117461564_117461646_117462917_117463200_117472832_117473133_117476271_117476527_117481790_117482079_117486359_117486471_117487948_117487965_117489629_117489857_117490815
transcript_105473.known	chr5	+	572	3	FSM	ENSMUSG00000066894.15	ENSMUST00000128524.2	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGTGTGGGCTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	117457425	117463265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_117457569_117461564_117461646_117462917
transcript_105474.known	chr5	-	748	1	FSM	ENSMUSG00000072688.3	ENSMUST00000202768.2	748	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-31	NA	117457309	117456561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_117456600_117457300
transcript_105483.known	chr5	-	2796	11	FSM	ENSMUSG00000029363.15	ENSMUST00000086461.13	2796	11	0	0	0	0	multi-exon	TRUE	canonical	3	1613	junction_7	125.046431376509	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACCGTCATGCACCGAG	NA	False	NA	NA	False	AATAAA	-19	NA	117527112	117516167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
transcript_105505.known	chr5	+	2421	9	FSM	ENSMUSG00000029364.16	ENSMUST00000031309.16	2421	9	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_4	52.4760361974873	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCTGTTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	117495368	117516666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_117495539_117501655_117501825_117508755_117509001_117509153_117509286_117512177_117512279_117513833_117514007_117514561_117514673_117514755_117514864_117515454
transcript_10551.known	chr10	+	2290	9	FSM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	28.5938695352693	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAGTCCTAGAAATGGT	NA	False	NA	16	True	AATAAA	-17	NA	77095051	77105409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101796_77102746_77102928_77103017_77103142_77104360
transcript_105516.known	chr5	-	3751	9	FSM	ENSMUSG00000029363.15	ENSMUST00000150962.8	3751	9	0	0	0	0	multi-exon	FALSE	canonical	3	1613	junction_5	131.535582163155	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTTGTGTGAGGCGTCT	NA	False	NA	NA	False	AATATA	-16	NA	117527087	117516469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_117518887_117519900_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
transcript_105526.known	chr5	-	772	3	FSM	ENSMUSG00000029363.15	ENSMUST00000111953.2	772	3	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_2	55	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAATTGTAGTACAGTT	NA	False	NA	NA	False	NA	NA	NA	117527110	117524345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_117524924_117525933_117525999_117526981
transcript_105528.known	chr5	+	3357	2	FSM	ENSMUSG00000029364.16	ENSMUST00000125522.2	3357	2	0	0	0	0	multi-exon	FALSE	canonical	3	637	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-13	NA	117495369	117504843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_117495539_117501655
transcript_105531.nic	chr5	+	2759	3	ISM	ENSMUSG00000029361.19	ENSMUST00000102557.10	4591	29	82449	-2262	30388	1807	3prime_fragment	FALSE	canonical	3	46	junction_1	6.5	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGCAAGGTGGCCATCTG	NA	False	NA	NA	False	NA	NA	NA	118087627	118094236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_118087894_118090829_118090949_118091862
transcript_105534.known	chr5	+	3959	12	FSM	ENSMUSG00000032898.10	ENSMUST00000202447.4	3959	12	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_9	98.2366008780135	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGTGACCTGCCCGCTT	NA	False	NA	11	True	AATAAA	-22	NA	118114794	118148266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138381_118138594_118140079_118140238_118146074
transcript_105537.known	chr5	+	3883	12	FSM	ENSMUSG00000032898.10	ENSMUST00000035579.10	3883	12	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_9	49.846707161818	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCAGTGACCTGCCCGCT	NA	False	NA	10	True	AATAAA	-21	NA	118114848	118148265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138402_118138594_118140079_118140238_118146074
transcript_105550.known	chr5	+	1971	4	FSM	ENSMUSG00000032898.10	ENSMUST00000201427.4	1971	4	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_3	13.0979218029257	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	118114838	118125637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163
transcript_105551.known	chr5	+	981	8	FSM	ENSMUSG00000029359.14	ENSMUST00000124648.8	981	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	26.954231805876	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGACAATAAAGGTTTCCT	NA	False	NA	-16	True	NA	NA	NA	118165829	118199910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_118166053_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194509_118194601_118194710_118197506_118197555_118199666
transcript_105552.known	chr5	+	785	8	FSM	ENSMUSG00000029359.14	ENSMUST00000151792.8	785	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	31.162510181568	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTAACCCTTCTTCAGT	4368	False	NA	-88	True	NA	NA	NA	118174095	118199838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194509_118194601_118194710_118197506_118197555_118199666
transcript_105553.known	chr5	+	994	7	FSM	ENSMUSG00000029359.14	ENSMUST00000135540.8	994	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	15.0111069989303	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	NA	False	NA	9	True	AATAAA	-14	NA	118165934	118199935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_118166053_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194710_118197506_118197555_118199666
transcript_105556.known	chr5	-	5000	11	FSM	ENSMUSG00000032867.9	ENSMUST00000049474.9	5000	11	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_8	26.290682760248	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGCTCGTGTCACACAG	NA	False	NA	NA	False	AATAAA	-44	NA	118293529	118203029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_118206295_118206669_118206781_118208410_118208585_118215641_118215770_118230560_118230768_118233597_118233795_118251676_118251835_118263000_118263090_118266873_118267039_118280732_118280838_118293128
transcript_105565.known	chr5	-	1937	8	FSM	ENSMUSG00000032867.9	ENSMUST00000201545.2	1937	8	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_5	29.5476094547392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTCCAGATTTTAGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	118293491	118215116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_118215770_118230560_118230768_118233597_118233795_118251676_118251835_118263000_118263090_118266873_118267039_118280732_118280838_118293128
transcript_105569.known	chr5	+	5382	2	FSM	ENSMUSG00000046607.7	ENSMUST00000054836.7	5382	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGCCTCTGTGTGTTTT	NA	False	NA	NA	False	TTTAAA	-21	NA	118307812	118327543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_118308194_118322542
transcript_105574.known	chr5	-	4431	11	FSM	ENSMUSG00000032850.17	ENSMUST00000121369.8	4431	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	4.80520551069359	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTATCTGTGAGTCAC	NA	False	NA	NA	False	AATAAA	-17	NA	118383181	118328806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_118331732_118339212_118339315_118339430_118339497_118340838_118340989_118366848_118367003_118370466_118370568_118372205_118372283_118375191_118375662_118380522_118380582_118380914_118381097_118383036
transcript_105576.known	chr5	-	408	5	FSM	ENSMUSG00000032850.17	ENSMUST00000133372.2	408	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.49519052838329	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTCAGGCCTGGCAGGT	NA	False	NA	NA	False	NA	NA	NA	118383057	118375569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_118375662_118380522_118380582_118380914_118381051_118381945_118382046_118383036
transcript_10558.nic	chr10	+	394	2	ISM	ENSMUSG00000020260.10	ENSMUST00000217993.2	7010	5	-31	8769	-31	-6166	5prime_fragment	FALSE	canonical	3	179	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGTATGAGCAGTTCATT	NA	False	NA	5	True	AATAAA	-14	NA	77095120	77096634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_77095288_77096407
transcript_105580.nnic	chr5	+	2568	6	NNC	ENSMUSG00000032840.8	novel	5649	5	NA	NA	-39	-2984	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	73.3255753472143	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTGTGGCTGTGGAATG	1600	False	NA	4	True	NA	NA	NA	118383252	118401174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164_118399994_118400129
transcript_105582.known	chr5	+	5649	5	FSM	ENSMUSG00000032840.8	ENSMUST00000049138.8	5649	5	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_3	13.6633634219397	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTTACAGTGCCGGG	1639	False	NA	8	True	AATAAA	-18	NA	118383291	118404158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164
transcript_105588.nnic	chr5	+	1627	11	NNC	ENSMUSG00000018076.13	novel	9296	31	NA	NA	-387	8178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.71118469422501	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGACAAGTTGCAAAAGAG	NA	False	NA	NA	False	AAGAAA	-3	NA	118698356	118866357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_118698510_118698786_118698923_118731397_118731636_118809077_118809163_118818952_118819037_118856547_118856694_118859439_118859635_118859829_118860004_118862052_118862219_118864325_118864431_118866212
transcript_105590.known	chr5	+	2218	5	FSM	ENSMUSG00000018076.13	ENSMUST00000201614.2	2218	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	2.29128784747792	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACGA	NA	False	NA	NA	False	AATAAA	-45	NA	118698743	118858179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_118698923_118731397_118731636_118809077_118809163_118818952_118819037_118856547
transcript_10560.known	chr10	-	6584	11	FSM	ENSMUSG00000020262.16	ENSMUST00000098374.9	6584	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	12.5554768925756	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATGGACATTTTCCTTT	NA	False	NA	NA	False	AATAAA	-23	NA	77254104	77126559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_77130796_77131531_77131711_77139006_77139189_77146939_77147109_77148181_77148361_77149238_77149408_77153069_77153185_77157482_77158418_77161699_77161775_77195400_77195570_77253928
transcript_105605.known	chr5	+	4856	8	FSM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_2	231.190088764326	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	22	True	AATAAA	-16	NA	119809082	119822789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_119810470_119812090_119812359_119813307_119813368_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
transcript_10561.known	chr10	-	6549	11	FSM	ENSMUSG00000020262.16	ENSMUST00000020496.14	6549	11	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_4	10.2024506859872	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATGGACATTTTCCTTT	NA	False	NA	NA	False	AATAAA	-23	NA	77254099	77126559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_77130796_77131531_77131711_77139006_77139189_77146939_77147109_77148211_77148361_77149238_77149408_77153069_77153185_77157482_77158418_77161699_77161775_77195400_77195570_77253928
transcript_105616.known	chr5	+	4982	7	FSM	ENSMUSG00000018604.19	ENSMUST00000079719.11	4982	7	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_2	196.719272625288	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	119808733	119822626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
transcript_105642.known	chr5	+	2995	1	FSM	ENSMUSG00000018604.19	ENSMUST00000202034.2	2995	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAGAAGAAGAAAAAAA	NA	False	NA	NA	False	AATACA	-7	NA	119808733	119811728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_119808700_119811700
transcript_105643.known	chr5	+	4777	8	FSM	ENSMUSG00000018604.19	ENSMUST00000121021.8	4777	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	319.496925985659	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	22	True	AATAAA	-16	NA	119808926	119822789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_119809123_119809297_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
transcript_105644.known	chr5	-	1345	3	FSM	ENSMUSG00000086847.2	ENSMUST00000135385.2	1345	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTTATTTCCGGTCGGA	2703	False	NA	NA	False	ATTAAA	-17	NA	119829283	119823159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_119824120_119826288_119826463_119829072
transcript_105649.known	chr5	+	4010	24	FSM	ENSMUSG00000029594.13	ENSMUST00000031590.12	4010	24	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_16	11.5488606136917	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATGTCACTCTGTCAC	NA	False	NA	21	True	AATAAA	-31	NA	120254529	120337046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_120254715_120256724_120256908_120257696_120257817_120257959_120257996_120258161_120258367_120260957_120261215_120262215_120262297_120262758_120262838_120264238_120264311_120265029_120265231_120266248_120266380_120268774_120268894_120269218_120269316_120270198_120270310_120270906_120271108_120271825_120271947_120278268_120278439_120278601_120278663_120279615_120279696_120281441_120281498_120282061_120282179_120313923_120314030_120324282_120324404_120335946
transcript_105665.known	chr5	+	455	2	FSM	ENSMUSG00000029594.13	ENSMUST00000202388.2	455	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTACTTTTTAACTCTTC	NA	False	NA	NA	False	NA	NA	NA	120254581	120257046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_120254715_120256724
transcript_105666.known	chr5	-	1476	9	FSM	ENSMUSG00000029596.14	ENSMUST00000031594.13	1476	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.2220486043289	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTGGCTCCCTGGGTTC	1703	False	NA	NA	False	AATAAA	-15	NA	120610875	120596266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_120596617_120597509_120597635_120597820_120598049_120598671_120598761_120600041_120600182_120600910_120600951_120601096_120601291_120605338_120605564_120610790
transcript_105670.known	chr5	-	4208	12	FSM	ENSMUSG00000029598.13	ENSMUST00000031597.7	4208	12	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_2	57.4604427353187	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGGCTTTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	120641690	120621346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_120623904_120624104_120624268_120624712_120624866_120625494_120625567_120625736_120625833_120626474_120626636_120629190_120629289_120630729_120630945_120631116_120631218_120632442_120632602_120637061_120637156_120641351
transcript_105688.known	chr5	-	1453	9	FSM	ENSMUSG00000029598.13	ENSMUST00000151361.2	1453	9	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_4	35.3685948264841	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCGTCTTGTGACCTTCA	NA	False	NA	NA	False	NA	NA	NA	120641677	120625363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_120625567_120625736_120625833_120626474_120626636_120629190_120629289_120630729_120630945_120631116_120631218_120632442_120632602_120637061_120637156_120641351
transcript_10569.known	chr10	-	3289	4	FSM	ENSMUSG00000020262.16	ENSMUST00000150227.8	3289	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	14.8398861930347	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGTTTCAAAG	NA	False	NA	NA	False	GATAAA	-32	NA	77254072	77158624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_77161526_77161699_77161775_77195400_77195570_77253928
transcript_105692.known	chr5	+	2898	16	FSM	ENSMUSG00000032754.15	ENSMUST00000068326.14	2898	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	54.5084702897938	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	-4	True	NA	6	True	AATAAA	-22	NA	120649232	120672089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
transcript_10570.known	chr10	-	2577	5	FSM	ENSMUSG00000020262.16	ENSMUST00000154607.8	2577	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	11.0989864402116	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAATCCCTC	NA	False	NA	NA	False	AAAACA	-18	NA	77254099	77151957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_77153185_77157482_77158418_77161699_77161775_77195400_77195570_77253928
transcript_105701.known	chr5	+	2661	14	FSM	ENSMUSG00000032754.15	ENSMUST00000076051.12	2661	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	64.1450833343938	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTACCAGAAGAGTCCCACA	80	False	NA	2	True	AATAAA	-18	NA	120649316	120672085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120670924
transcript_105706.nnic	chr5	+	2624	13	NIC	ENSMUSG00000032754.15	novel	2775	15	NA	NA	-57	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	57.0079794609686	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTACCAGAAGAGTCCCAC	377	False	NA	1	True	AATAAA	-17	NA	120649175	120672084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658838_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
transcript_105713.nnic	chr5	+	2476	11	NIC	ENSMUSG00000032754.15	novel	2661	14	NA	NA	-57	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	71.8476861144463	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTACCAGAAGAGTCCCACA	377	False	NA	2	True	AATAAA	-18	NA	120649175	120672085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658838_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120670924
transcript_105716.known	chr5	-	4712	28	FSM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_13	5.06365515872966	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGCAGCCTTTGATTTC	9183	False	NA	1	True	AATAAA	-22	NA	120726738	120672217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_120674290_120675625_120675707_120675876_120676017_120677067_120677153_120677274_120677344_120677853_120677901_120678638_120678755_120679942_120680033_120680519_120680592_120681409_120681518_120682477_120682551_120683139_120683194_120683322_120683380_120685513_120685559_120685999_120686064_120686335_120686385_120687555_120687681_120687990_120688108_120691507_120691608_120691817_120691877_120692340_120692376_120693197_120693287_120693932_120694064_120694536_120694651_120695834_120696012_120698280_120698409_120723249_120723494_120726567
transcript_105721.known	chr5	-	2622	2	FSM	ENSMUSG00000032741.10	ENSMUST00000202072.2	2622	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	9262	False	NA	NA	False	NA	NA	NA	120726659	120720963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_120723494_120726567
transcript_105723.known	chr5	-	796	4	FSM	ENSMUSG00000029600.11	ENSMUST00000140554.2	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	33.2365260920372	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGGGGTCTCGGATGGC	6334	False	NA	NA	False	NA	NA	NA	120750635	120747975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_120748028_120749442_120749795_120750044_120750140_120750338
transcript_105725.known	chr5	-	1573	3	FSM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.5	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTAGTGTGTTACTTTTT	6315	False	NA	NA	False	ATTAAA	-20	NA	120750654	120747122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_120748028_120749442_120749795_120750338
transcript_105728.known	chr5	+	4322	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_5	36.9159410499192	1495	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGGTATTCCTCCTGCC	NA	False	NA	16	True	GATAAA	-26	NA	120750803	120766657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
transcript_10573.known	chr10	-	2394	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTCCCCTGGCTTTC	NA	False	NA	-7	True	AATAAA	-26	NA	77351619	77322494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
transcript_105758.known	chr5	+	3251	21	FSM	ENSMUSG00000029602.12	ENSMUST00000156722.2	3251	21	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_7	7.30479294709987	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGTGACGTGTTAAAATCG	NA	False	NA	11	True	TATAAA	-21	NA	120787252	120817662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_120787600_120790878_120790936_120792870_120792985_120793132_120793195_120797567_120797698_120800075_120800158_120800248_120800381_120800983_120801070_120801790_120801909_120802035_120802190_120802510_120802576_120802810_120802924_120804307_120804501_120808340_120808479_120809605_120809751_120812631_120812805_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
transcript_10576.known	chr10	+	2294	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	0	0	0	0	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGATTTCTTTGTTTTGT	1291	False	NA	32	True	AATAAA	-15	NA	77417553	77434566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
transcript_105767.nic	chr5	+	2239	15	ISM	ENSMUSG00000029602.12	ENSMUST00000156722.2	3251	21	33	7576	33	-7285	5prime_fragment	FALSE	canonical	3	12	junction_7	6.94291593155592	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAGATAGATTCCCCTGC	NA	False	NA	NA	False	AAAAAG	-4	NA	120787285	120810086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_120787600_120790878_120790936_120792870_120792985_120793132_120793195_120797567_120797698_120800075_120800158_120800248_120800381_120800983_120801070_120801790_120801909_120802035_120802190_120802510_120802576_120802810_120802924_120804307_120804501_120808340_120808479_120809605
transcript_105768.nic	chr5	+	2682	15	ISM	ENSMUSG00000029602.12	ENSMUST00000156722.2	3251	21	34	7132	34	-6841	5prime_fragment	FALSE	canonical	3	12	junction_7	6.94291593155592	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGGGAGCAACAGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	120787286	120810530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_120787600_120790878_120790936_120792870_120792985_120793132_120793195_120797567_120797698_120800075_120800158_120800248_120800381_120800983_120801070_120801790_120801909_120802035_120802190_120802510_120802576_120802810_120802924_120804307_120804501_120808340_120808479_120809605
transcript_105777.known	chr5	-	4035	10	FSM	ENSMUSG00000029603.16	ENSMUST00000031607.7	4035	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	46.8325095485741	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGCCTTTTTCTGCCAAG	NA	False	NA	-18	True	AATAAA	-16	NA	120849992	120818266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120848119_120849041_120849549
transcript_105778.nnic	chr5	-	3228	9	NNC	ENSMUSG00000029603.16	novel	4035	10	NA	NA	-993	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_8	41.4123698307643	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120834461	120818267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120833903
transcript_105779.nnic	chr5	-	2808	9	NNC	ENSMUSG00000029603.16	novel	4035	10	NA	NA	-1122	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	41.4123698307643	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120834590	120818267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474_120833178_120834452
transcript_10578.known	chr10	+	565	6	FSM	ENSMUSG00000009291.14	ENSMUST00000161789.8	565	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	319.989749835835	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAATACGGTAAGAAAG	1329	False	NA	NA	False	AATGAA	-22	NA	77417591	77429733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77417762_77422213_77422239_77423084_77423138_77425467_77425577_77428679_77428852_77429697
transcript_105780.known	chr5	-	2961	8	FSM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_7	31.3453443472057	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120833468	120818267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474
transcript_105783.known	chr5	+	1837	6	FSM	ENSMUSG00000029605.17	ENSMUST00000183291.2	1837	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.09544511501033	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	120950702	120962228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_120950946_120952490_120952768_120955677_120955863_120959258_120959492_120960171_120960326_120961483
transcript_105784.known	chr5	-	1489	7	FSM	ENSMUSG00000066861.15	ENSMUST00000162096.8	1489	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	130.842674825745	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121025676	121014784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019886_121020133_121023835_121024125_121025442
transcript_105786.known	chr5	-	1885	7	FSM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	161.447015732372	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTCATTGGTATCAACG	NA	False	NA	NA	False	AATAAA	-37	NA	121045584	121034318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
transcript_105789.known	chr5	-	5599	16	FSM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_6	9.90263713473448	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCATTTGGTCTGTTGT	852	False	NA	0	True	AATAAA	-23	NA	121329460	121268595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624_121281693_121282592_121282748_121287165_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
transcript_105790.known	chr5	-	5535	16	FSM	ENSMUSG00000043733.15	ENSMUST00000054547.9	5535	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	23.8687149959011	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTATTTGTCATTTGG	920	False	NA	-8	True	AATAAA	-15	NA	121329392	121268603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624_121281693_121282592_121282760_121287165_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
transcript_105793.nic	chr5	-	1839	13	ISM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	-58	12470	-58	-9163	5prime_fragment	FALSE	canonical	3	69	junction_3	9.29568298847493	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGAATGAGGCTCTGAC	794	False	NA	0	True	NA	NA	NA	121329518	121281065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_121281218_121281624_121281693_121282592_121282748_121287165_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
transcript_105795.nic	chr5	-	1214	9	ISM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	-58	21797	-58	-18490	5prime_fragment	FALSE	canonical	3	77	junction_1	8.05353183392231	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTACATTGCCACTCAAG	794	False	NA	NA	False	NA	NA	NA	121329518	121290392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
transcript_105796.nic	chr5	-	1070	7	ISM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	-58	23920	-58	-20613	5prime_fragment	FALSE	canonical	3	78	junction_1	7.38617326872011	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGATACAAAAACATCCTGC	794	False	NA	NA	False	NA	NA	NA	121329518	121292515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
transcript_105797.known	chr5	-	737	5	FSM	ENSMUSG00000043733.15	ENSMUST00000148871.2	737	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	2.38484800354236	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACAGATCTGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	121281698	121271902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624
transcript_105799.known	chr5	+	1270	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	0	0	0	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTGACTATAGACTCA	NA	False	NA	NA	False	AATAGA	-23	NA	121342543	121347304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
transcript_105809.known	chr5	+	829	2	FSM	ENSMUSG00000029614.14	ENSMUST00000146579.2	829	2	0	0	0	0	multi-exon	FALSE	canonical	3	7748	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGAAGTGTGTTAGAGTT	NA	False	NA	NA	False	NA	NA	NA	121342583	121344265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121342616_121343468
transcript_105811.known	chr5	+	714	1	FSM	ENSMUSG00000029614.14	ENSMUST00000197044.2	714	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	AAAAAG	-10	NA	121342608	121343322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121342600_121343300
transcript_105812.known	chr5	+	486	4	FSM	ENSMUSG00000029614.14	ENSMUST00000201155.2	486	4	0	0	0	0	multi-exon	FALSE	canonical	2	335	junction_2	7809.67657603196	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTGTCCTTTTTGT	NA	False	NA	0	True	ATTAAA	-14	NA	121344786	121347028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121344874_121345209_121345259_121346472_121346639_121346844
transcript_105813.known	chr5	+	15482	76	FSM	ENSMUSG00000042744.17	ENSMUST00000042614.13	15482	76	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_9	5.93990647139236	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGGTCACCTCCTCTG	4315	False	NA	19	True	AATAAA	-30	NA	121358281	121506640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121358721_121391923_121392442_121396761_121396852_121397867_121397999_121400561_121400671_121401947_121402087_121404297_121404469_121411669_121411863_121415737_121415897_121419118_121419233_121419866_121420008_121424292_121424526_121424782_121424929_121427629_121427701_121429257_121429364_121430111_121430233_121430792_121430916_121433437_121433563_121435165_121435320_121436121_121436223_121437507_121437707_121439831_121439952_121440699_121440805_121441594_121441759_121442280_121442515_121443734_121443928_121444063_121444169_121445004_121445094_121445409_121445586_121446312_121446449_121446555_121446698_121446792_121446960_121448603_121448751_121449685_121449871_121451936_121452091_121452930_121453212_121453379_121453570_121455264_121455347_121456625_121456829_121458027_121458164_121459460_121459644_121460254_121460420_121460698_121460869_121461980_121462097_121463253_121463358_121466147_121466310_121466425_121466575_121467127_121467208_121467520_121467685_121469738_121469977_121470984_121471122_121471485_121471613_121472399_121472538_121474652_121474790_121477487_121477649_121479935_121480118_121480712_121480919_121481155_121481287_121481541_121481748_121482745_121482926_121486481_121487789_121488492_121488701_121491553_121491778_121491876_121492029_121493625_121493733_121494265_121494390_121496206_121496398_121497359_121497507_121498167_121498288_121498694_121498851_121500503_121500608_121500780_121501003_121501805_121501970_121502598_121502795_121502929_121503153_121504531
transcript_105816.known	chr5	-	2503	12	FSM	ENSMUSG00000042726.15	ENSMUST00000042312.14	2503	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	8.79894809640935	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTTTCTATAG	3569	False	NA	1	True	AATAAA	-19	NA	121523695	121509787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121510476_121510665_121510739_121511200_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
transcript_105817.known	chr5	-	2425	12	FSM	ENSMUSG00000042726.15	ENSMUST00000120784.8	2425	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	10.9499235817553	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCTTGTGATTCTTTC	3630	False	NA	-4	True	AATAAA	-14	NA	121523634	121509792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121510476_121510665_121510739_121511212_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
transcript_105818.nic	chr5	-	2299	12	NIC	ENSMUSG00000042726.15	novel	2503	12	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	10.4920276700026	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCAGCTTGTGATTCTT	3565	False	NA	-6	True	AATAAA	-12	NA	121523699	121509794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_121510476_121510665_121510739_121511401_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
transcript_10582.nic	chr10	+	2379	8	NIC	ENSMUSG00000112241.2	novel	512	6	NA	NA	-144	4450	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	535.279480691143	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTTGTGTGGTGCTCA	NA	False	NA	5	True	AATAAA	-18	NA	77441886	77481827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_77442176_77445645_77445775_77449813_77449886_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
transcript_105828.known	chr5	+	5447	24	FSM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_8	45.1361728780741	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCAGGTTTGTTGAGACT	NA	False	NA	19	True	AATACA	-18	NA	121535998	121580472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
transcript_105841.nic	chr5	+	2730	22	ISM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	-30	3589	-30	0	5prime_fragment	FALSE	canonical	3	302	junction_8	46.1734873028366	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACGAGCATCATCATGGT	NA	False	NA	NA	False	ATTAAA	-29	NA	121535968	121576883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790
transcript_105861.known	chr5	+	2556	21	FSM	ENSMUSG00000042719.18	ENSMUST00000173895.8	2556	21	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	92.9051128840604	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACGAGCATCATCATGGT	NA	False	NA	NA	False	ATTAAA	-29	NA	121536056	121576883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121536126_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790
transcript_105867.nnic	chr5	-	1989	15	NNC	ENSMUSG00000029454.16	novel	2234	14	NA	NA	-72	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	65.054294435416	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTGCTTAAAGTTGCTA	NA	False	NA	-10	True	AATAAA	-16	NA	121684040	121663114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227_121683452_121683754
transcript_105871.known	chr5	-	2234	14	FSM	ENSMUSG00000029454.16	ENSMUST00000031410.14	2234	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	50.8494703910793	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTATATAGATTTAAGTT	NA	False	NA	4	True	AATAAA	-30	NA	121683968	121663100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227
transcript_105873.known	chr5	-	1513	14	FSM	ENSMUSG00000029454.16	ENSMUST00000111783.8	1513	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	58.7492918250155	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTTAAAGTTGCTATATA	NA	False	NA	-6	True	AATAAA	-20	NA	121683263	121663110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121663303_121663725_121663831_121664807_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227
transcript_10588.known	chr10	+	2031	6	FSM	ENSMUSG00000009293.18	ENSMUST00000174510.8	2031	6	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_5	14.0427917452336	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTTGTGTGGTGCTCA	90	False	NA	5	True	AATAAA	-18	NA	77458108	77481827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
transcript_105892.known	chr5	+	1366	11	FSM	ENSMUSG00000029452.19	ENSMUST00000094357.11	1366	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.13400532171888	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAATCTCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	121601214	121633457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121620395_121620501_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
transcript_105897.known	chr5	+	1288	10	FSM	ENSMUSG00000029452.19	ENSMUST00000031405.12	1288	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	6.43102050155013	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCGTCATTTGCAAGCTC	NA	False	NA	NA	False	AATAAA	-18	NA	121601214	121633484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
transcript_105901.known	chr5	-	5204	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	0	0	0	0	multi-exon	FALSE	canonical	3	820	junction_1	20.5	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCATATGTGTATCTG	3212	False	NA	NA	False	AGTAAA	-17	NA	121590569	121578886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121583636_121585203_121585343_121590253
transcript_105903.known	chr5	-	1123	2	FSM	ENSMUSG00000029616.10	ENSMUST00000052590.8	1123	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3222	False	NA	-41	True	AATAAA	-14	NA	121590559	121582818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121583636_121590253
transcript_105907.known	chr5	-	3867	13	FSM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	0	0	0	0	multi-exon	TRUE	canonical	3	476	junction_10	93.9036148872283	2196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCCTGGCGTGGTGCCTC	NA	False	NA	NA	False	AATAAA	-27	NA	121731887	121704089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
transcript_10591.known	chr10	+	1005	5	FSM	ENSMUSG00000020265.17	ENSMUST00000137841.9	1005	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	668.550858200033	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGCTTTGTCAAACATA	NA	False	NA	5	True	ATTAAA	-20	NA	77442042	77452544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451760_77451869_77451981
transcript_105922.known	chr5	-	1799	11	FSM	ENSMUSG00000029455.15	ENSMUST00000129753.8	1799	11	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_8	71.1047818363857	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACTCTCTGGCAGGCCT	NA	False	NA	NA	False	NA	NA	NA	121731643	121708378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
transcript_10594.known	chr10	+	430	5	FSM	ENSMUSG00000009293.18	ENSMUST00000174546.8	430	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	130.407773924717	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTACCCCTGTGCACACTG	138	False	NA	NA	False	GGGGCT	-5	NA	77458156	77480393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77479302_77479444_77480280
transcript_105948.nnic	chr5	-	2178	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-44	-1483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13.7846483061999	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTCTACTTCCTATG	NA	False	NA	-1	True	NA	NA	NA	121757045	121736450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
transcript_105950.nnic	chr5	-	2083	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-59	-1483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.3110265396406	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTCTACTTCCTATG	NA	False	NA	-1	True	NA	NA	NA	121757060	121736450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756943
transcript_105951.nnic	chr5	-	2180	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-5	-1483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.3110265396406	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTCTACTTCCTATG	NA	False	NA	-1	True	NA	NA	NA	121757006	121736450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752364_121756833
transcript_105953.known	chr5	-	3881	11	FSM	ENSMUSG00000042647.14	ENSMUST00000041252.13	3881	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	9.91413132856328	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCTTCTTGATCATGAT	NA	False	NA	0	True	NA	NA	NA	121757001	121734837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
transcript_10596.known	chr10	+	487	4	FSM	ENSMUSG00000020265.17	ENSMUST00000129492.8	487	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	597.315661940987	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCACCGAAGGATTCTCC	NA	False	NA	NA	False	NA	NA	NA	77442058	77452141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77442185_77445645_77445775_77449813_77449886_77451981
transcript_105962.known	chr5	-	3626	21	FSM	ENSMUSG00000029456.13	ENSMUST00000111770.2	3626	21	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	12.9348366823861	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTGTTCTGAGCTAGAT	NA	False	NA	-7	True	NA	NA	NA	121798577	121759090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777186_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790168_121794076_121794277_121798355
transcript_10597.known	chr10	+	1874	4	FSM	ENSMUSG00000020265.17	ENSMUST00000099538.6	1874	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	598.245397437837	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTGGCCTATGTTAAAC	NA	False	NA	25	True	AGTAAA	-18	NA	77442404	77453256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77442803_77445645_77445775_77449813_77449886_77451981
transcript_105974.known	chr5	+	3744	12	FSM	ENSMUSG00000029458.15	ENSMUST00000031414.15	3744	12	0	0	0	0	multi-exon	TRUE	canonical	3	111	junction_6	24.4408545656822	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGTCTGAAATTACCCA	907	False	NA	20	True	AATAAA	-30	NA	121798625	121825319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121798912_121800062_121800225_121801358_121801555_121803161_121803352_121810147_121810262_121813292_121813442_121816826_121816903_121817273_121817413_121817879_121817990_121820842_121820933_121822433_121822538_121823191
transcript_10598.known	chr10	+	404	4	FSM	ENSMUSG00000009293.18	ENSMUST00000172813.2	404	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	134.650164005346	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGCGGGATGACCGGG	128	False	NA	NA	False	NA	NA	NA	77458146	77480320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77458251_77477293_77477413_77479302_77479444_77480280
transcript_105982.known	chr5	-	4195	9	FSM	ENSMUSG00000042594.17	ENSMUST00000086310.8	4195	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_8	20.0187412191676	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTCACCACAGAAACAGG	NA	False	NA	NA	False	NA	NA	NA	121974922	121953710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121970565_121970654_121974612
transcript_105989.known	chr5	-	2530	8	FSM	ENSMUSG00000042594.17	ENSMUST00000040308.14	2530	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_7	11.8252583351856	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCCTACTAGGACCCCC	NA	False	NA	60	True	ATTAAA	-14	NA	121974913	121955278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121974612
transcript_10599.known	chr10	+	2169	10	FSM	ENSMUSG00000069581.13	ENSMUST00000092368.10	2169	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.43938871112224	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAAAATACATGGATGG	NA	False	NA	NA	False	NA	NA	NA	77700456	77722855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77700717_77702113_77702205_77703505_77703663_77705396_77705529_77706156_77706384_77708927_77709115_77710718_77710949_77716895_77717084_77719274_77719377_77722260
transcript_105992.nic	chr5	-	2345	8	NIC	ENSMUSG00000042594.17	novel	2530	8	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	16.67088382021	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCCTACTAGGACCCCC	NA	False	NA	60	True	ATTAAA	-14	NA	121975752	121955278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121975636
transcript_105994.nic	chr5	-	2271	8	NIC	ENSMUSG00000042594.17	novel	2530	8	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	16.67088382021	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCAGAGTACTTTTTTT	NA	False	NA	-14	True	TTTAAA	-6	NA	121975752	121955352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_121956157_121956278_121956451_121956527_121956743_121956822_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121975636
transcript_105996.known	chr5	-	4313	7	FSM	ENSMUSG00000042594.17	ENSMUST00000136960.8	4313	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	11.6535640709422	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAACCATGATCTCTGC	NA	False	NA	-20	True	ATTAAA	-13	NA	121974888	121953550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121956157_121956278_121956451_121956527_121956918_121957001_121957094_121957169_121957272_121966464_121967140_121974612
transcript_106.known	SIRV3	+	2018	3	FSM	SIRV3A	SIRV303	2018	3	0	0	0	0	multi-exon	FALSE	canonical	3	1857	junction_1	482	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1963	7822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_+_2006_4568_4780_6057
transcript_106000.known	chr5	+	636	4	FSM	ENSMUSG00000044134.10	ENSMUST00000198155.2	636	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	14.7271480229163	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTGAAGGCACTGTCCC	5434	False	NA	NA	False	NA	NA	NA	121987067	121990947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121987188_121988532_121988610_121989230_121989343_121990620
transcript_106001.known	chr5	+	2335	3	FSM	ENSMUSG00000044134.10	ENSMUST00000198271.5	2335	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	19.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATCCACAGTTGATATAT	5413	False	NA	32	True	AATAAA	-43	NA	121987046	121992695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_121987188_121989230_121989343_121990613
transcript_106003.known	chr5	-	8784	23	FSM	ENSMUSG00000042589.19	ENSMUST00000111752.10	8784	23	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_22	3.67479689661959	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTTTCCTCATCTGT	NA	False	NA	NA	False	NA	NA	NA	122187914	121994428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_121999445_122002709_122002984_122003914_122004104_122005153_122005424_122006507_122006680_122007070_122007844_122011112_122011215_122011719_122012365_122013141_122013242_122013349_122013399_122014892_122014952_122015030_122015223_122017877_122017983_122020835_122020885_122022069_122022137_122022809_122022887_122023900_122024022_122025416_122025552_122036339_122036419_122059376_122059425_122062867_122062979_122181832_122181908_122187838
transcript_106018.known	chr5	+	662	7	FSM	ENSMUSG00000013936.13	ENSMUST00000014080.13	662	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.91485421551268	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGACCATTGGCTCAT	3605	False	NA	NA	False	AATAAA	-21	NA	122239013	122244917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122239093_122239811_122239902_122240758_122240835_122241893_122241999_122242889_122242969_122243050_122243100_122244733
transcript_10602.known	chr10	+	1818	7	FSM	ENSMUSG00000020284.17	ENSMUST00000105397.10	1818	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	1.5723301886761	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGTGTCCCAGGCCC	NA	False	NA	12	True	AATAAA	-12	NA	77814357	77821268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77814616_77815586_77815606_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
transcript_106021.known	chr5	+	2384	7	FSM	ENSMUSG00000004455.17	ENSMUST00000102528.11	2384	7	0	0	0	0	multi-exon	FALSE	canonical	3	2504	junction_1	178.873092815363	2447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTGTCTTTCTGTCAGCA	NA	False	NA	3	True	ATTAAA	-19	NA	122296340	122313336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311019_122311208_122311344_122312117
transcript_106022.known	chr5	+	1442	8	FSM	ENSMUSG00000004455.17	ENSMUST00000086294.11	1442	8	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_7	836.265410461711	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTGTCTTTCTGTCAGCA	NA	False	NA	3	True	ATTAAA	-19	NA	122296418	122313336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311019_122311208_122311344_122312117_122312179_122313042
transcript_106023.known	chr5	+	2492	6	FSM	ENSMUSG00000004455.17	ENSMUST00000128309.8	2492	6	0	0	0	0	multi-exon	FALSE	canonical	3	2504	junction_1	193.218425622403	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTCGTGTCTTTCTGTC	NA	False	NA	-1	True	ATTAAA	-15	NA	122296418	122313332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311344_122312117
transcript_106024.known	chr5	+	1632	7	FSM	ENSMUSG00000004455.17	ENSMUST00000132555.8	1632	7	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_6	895.497518453042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTGTCTTTCTGTCAGCA	NA	False	NA	3	True	ATTAAA	-19	NA	122296418	122313336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122296679_122306237_122306370_122306981_122307213_122309884_122309990_122310794_122311344_122312117_122312179_122313042
transcript_106025.known	chr5	-	5717	14	FSM	ENSMUSG00000038593.19	ENSMUST00000111738.8	5717	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	9.03379584978658	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGATGGCCT	NA	False	NA	NA	False	NA	NA	NA	122402523	122375910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122379899_122380668_122380789_122383563_122383727_122384547_122384689_122385594_122385681_122385982_122386109_122386911_122387047_122388509_122388531_122389674_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
transcript_106033.nic	chr5	+	3005	8	NIC	ENSMUSG00000064267.14	novel	2805	7	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	18.6153327191565	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGGCTCCTTTTTGTT	NA	False	NA	28	True	AATAAA	-39	NA	122344811	122380360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_122345220_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
transcript_106035.known	chr5	+	2790	8	FSM	ENSMUSG00000064267.14	ENSMUST00000072602.14	2790	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	20.2887321698825	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGGCTCCTTTTTGTT	NA	False	NA	28	True	AATAAA	-39	NA	122347791	122380360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122347985_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
transcript_106038.known	chr5	-	2371	13	FSM	ENSMUSG00000038569.14	ENSMUST00000117263.8	2371	13	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_11	5.93190525885234	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGCTTACATTGCTT	9993	False	NA	NA	False	TATAAA	-21	NA	122492295	122461285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122462288_122463413_122463528_122463943_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490608_122490678_122492201
transcript_106045.known	chr5	-	1631	11	FSM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	5.37494186015067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGGTCATTTTATA	9992	False	NA	NA	False	AATAAA	-17	NA	122492296	122463570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606_122490678_122492201
transcript_106049.known	chr5	+	4644	6	FSM	ENSMUSG00000038582.16	ENSMUST00000053426.15	4644	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_2	9.11262859991561	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCACTCCTTTGGTTTG	NA	False	NA	24	True	AATAAA	-37	NA	122422427	122462344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122422973_122446193_122446374_122451657_122451857_122455173_122455298_122457776_122457907_122458878
transcript_106052.known	chr5	-	1726	1	FSM	ENSMUSG00000038569.14	ENSMUST00000200653.2	1726	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGTGTGCCTCAAATCC	9989	False	NA	NA	False	NA	NA	NA	122492283	122490557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122490600_122492300
transcript_106054.known	chr5	+	1592	8	FSM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	35.5154464814327	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8039	False	NA	NA	False	AATAAA	-42	NA	122510513	122520965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110_122520240_122520323
transcript_106065.known	chr5	+	2198	7	FSM	ENSMUSG00000029464.11	ENSMUST00000127608.8	2198	7	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	30.9861079984061	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACTGAAATGTAAATAAA	7464	False	NA	NA	False	ATTAAA	-5	NA	122509938	122520904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519558_122520110_122520240_122520323
transcript_106069.known	chr5	-	1388	7	FSM	ENSMUSG00000029463.6	ENSMUST00000031419.6	1388	7	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	23.7235232534199	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATTTTAAATTATCTTT	NA	False	NA	-20	True	ATTAAA	-21	NA	122510427	122502642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122502983_122504376_122504460_122505410_122505583_122505661_122505792_122507579_122507702_122508577_122508637_122509945
transcript_106078.known	chr5	+	1014	5	FSM	ENSMUSG00000029462.19	ENSMUST00000118830.8	1014	5	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	833.067074130289	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTTCTTGAAAACCTGT	695	False	NA	17	True	AATAAA	-17	NA	122492447	122501349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122492540_122494856_122494869_122498075_122498268_122500098_122500335_122500867
transcript_106081.known	chr5	+	874	4	FSM	ENSMUSG00000029462.19	ENSMUST00000111729.10	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	1030.830194013	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGCATGAAGAGAAAGAATC	732	False	NA	-58	True	NA	NA	NA	122492484	122501274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122492540_122498091_122498268_122500098_122500335_122500867
transcript_106087.known	chr5	+	720	3	FSM	ENSMUSG00000029462.19	ENSMUST00000117868.8	720	3	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_1	432	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAGTCCTTATCAACAA	716	False	NA	NA	False	GATAAA	-4	NA	122492468	122500555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122492540_122498075_122498268_122500098
transcript_106089.known	chr5	+	713	3	FSM	ENSMUSG00000029462.19	ENSMUST00000118765.8	713	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	716	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACCTTCCATTTAGAC	732	False	NA	1	True	AATAAA	-1	NA	122492484	122501333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122492540_122498075_122498268_122500867
transcript_106090.known	chr5	+	899	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	514	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTGTACCGTGTATG	4488	False	NA	38	True	ATTAAA	-22	NA	122529940	122544242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
transcript_106094.known	chr5	+	2751	11	FSM	ENSMUSG00000029466.12	ENSMUST00000031422.10	2751	11	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_7	29.6310647800581	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACCAGTGTGAGCTTCA	NA	False	NA	NA	False	GATAAA	-20	NA	122560506	122582975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352_122579504_122581866
transcript_106097.known	chr5	+	3599	10	FSM	ENSMUSG00000029466.12	ENSMUST00000119792.2	3599	10	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_7	31.1071426040332	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGTGTTTTGCCTGCA	NA	False	NA	NA	False	ATTAAA	-14	NA	122560543	122581497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352
transcript_106106.known	chr5	-	3984	21	FSM	ENSMUSG00000029467.16	ENSMUST00000177974.8	3984	21	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	272.291071282185	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAGCTGTGGCTGATTT	7607	False	NA	NA	False	AATAAA	-22	NA	122639958	122591576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122592368_122595365_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
transcript_106112.known	chr5	-	4486	20	FSM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	0	0	0	0	multi-exon	FALSE	canonical	3	1036	junction_17	105.58760524925	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGAGAAAAATAACTGTC	7277	False	NA	-28	True	AATAAA	-13	NA	122640288	122594402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
transcript_106136.known	chr5	-	5674	21	FSM	ENSMUSG00000029467.16	ENSMUST00000179939.8	5674	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	276.93845886767	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCTGTGGCTGATTTA	7328	False	NA	NA	False	AATAAA	-23	NA	122640237	122591575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122592368_122593955_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
transcript_106137.known	chr5	-	2950	19	FSM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	9.90510530540242	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCTTTTTACTTCATT	1243	False	NA	NA	False	ATTAAA	-20	NA	122752581	122688266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
transcript_10614.known	chr10	-	3730	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	0	0	0	0	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	1878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTCGCCAGACTGGCT	NA	False	NA	NA	False	NA	NA	NA	77845641	77822780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
transcript_106143.nic	chr5	-	962	9	ISM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	-11	44417	-11	-3413	5prime_fragment	FALSE	canonical	3	48	junction_7	9.83536349099514	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATTAGAAAGCAAGAAAAA	1232	False	NA	NA	False	GATAAA	-38	NA	122752592	122732683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
transcript_106146.known	chr5	-	872	7	FSM	ENSMUSG00000029469.15	ENSMUST00000144065.6	872	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	10.4682058316281	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTTTCTCATTTCCTA	1255	False	NA	NA	False	NA	NA	NA	122752569	122740244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
transcript_106147.known	chr5	+	4936	13	FSM	ENSMUSG00000029468.18	ENSMUST00000100737.10	4936	13	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_11	5.09015935135848	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGAATTCTCTTTGATT	NA	False	NA	NA	False	AATAAA	-21	NA	122781973	122822352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122795074_122795148_122796770_122796868_122801639_122801721_122802607_122802738_122804206_122804344_122808500_122808592_122811417_122811484_122811728_122811879_122814724_122814827_122818869
transcript_106150.known	chr5	+	2576	13	FSM	ENSMUSG00000029468.18	ENSMUST00000121489.8	2576	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	7.05927286151579	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTTTGATTCCTTCGTT	NA	False	NA	NA	False	AATAAA	-29	NA	122781973	122822360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122795074_122795148_122796770_122796868_122801639_122801721_122802607_122802738_122804206_122804344_122808500_122808592_122811417_122811484_122811728_122811879_122814724_122814827_122821237
transcript_106152.known	chr5	+	712	4	FSM	ENSMUSG00000029468.18	ENSMUST00000086247.6	712	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_3	10.4029910228848	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGAATTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	122782071	122793325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122793041
transcript_106154.known	chr5	+	2702	12	FSM	ENSMUSG00000029470.16	ENSMUST00000031429.14	2702	12	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	9.63207451716048	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGGGCTGTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	122845606	122867801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
transcript_106156.known	chr5	+	1111	11	FSM	ENSMUSG00000029470.16	ENSMUST00000142664.3	1111	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_9	29.8636903278881	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTTCAATCCCACTCAG	NA	False	NA	NA	False	NA	NA	NA	122845716	122866386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865807_122865904_122866349
transcript_106157.known	chr5	+	1887	11	FSM	ENSMUSG00000029470.16	ENSMUST00000081554.13	1887	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	30.411182153938	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTTGTCTGTGCTGCCT	NA	False	NA	15	True	ATTAAA	-20	NA	122845646	122867107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
transcript_106160.known	chr5	+	1030	10	FSM	ENSMUSG00000029470.16	ENSMUST00000139631.8	1030	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	41.2499158248299	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTTCAATCCCACTCAG	NA	False	NA	NA	False	NA	NA	NA	122845716	122866386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122863052_122863195_122863292_122863430_122865260_122865355_122865807_122865904_122866349
transcript_106163.nic	chr5	-	2811	17	NIC	ENSMUSG00000029471.14	novel	2751	16	NA	NA	-290	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_15	27.0525385823586	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAACCAAAAACAAAAA	4333	False	NA	NA	False	NA	NA	NA	122917762	122871250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_122872309_122875495_122875597_122880162_122880292_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902017_122902322_122902366_122917314
transcript_106167.known	chr5	-	2751	16	FSM	ENSMUSG00000029471.14	ENSMUST00000200109.5	2751	16	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_2	25.1434992702996	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAACCAAAAACAAAAA	4699	False	NA	NA	False	NA	NA	NA	122917396	122871250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122872309_122875495_122875597_122880162_122880292_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_106172.nic	chr5	-	2988	15	NIC	ENSMUSG00000029471.14	novel	2751	16	NA	NA	-290	0	intron_retention	FALSE	canonical	3	5	junction_2	23.9604265574786	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAACCAAAAACAAAAA	4333	False	NA	NA	False	NA	NA	NA	122917762	122871250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_122872309_122875495_122875597_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_106173.nic	chr5	-	2251	15	NIC	ENSMUSG00000029471.14	novel	2751	16	NA	NA	-49	144	intron_retention	FALSE	canonical	3	5	junction_2	23.9604265574786	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCCCCCTCCATTGTGAA	4574	False	NA	NA	False	TTTAAA	-38	NA	122917521	122871746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_122872309_122875495_122875597_122881932_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_106175.nic	chr5	-	2131	13	ISM	ENSMUSG00000029471.14	ENSMUST00000199830.5	3139	14	-83	2732	-73	-2732	5prime_fragment	FALSE	canonical	3	28	junction_4	15.8190725251374	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTGGAATGTCACTCAGT	4550	False	NA	-22	True	AATAAA	-16	NA	122917545	122881413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_106177.known	chr5	-	1084	5	FSM	ENSMUSG00000029471.14	ENSMUST00000196742.2	1084	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	7.3824115301167	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAGTTAGCAGTGTCTT	4707	False	NA	0	True	AATAAA	-21	NA	122917388	122894338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_106182.known	chr5	-	2413	17	FSM	ENSMUSG00000029472.14	ENSMUST00000199406.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_3	528.705609099951	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122959343	122925789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929799_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_106185.known	chr5	-	2404	17	FSM	ENSMUSG00000029472.14	ENSMUST00000200645.5	2404	17	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_8	345.39967790952	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCTGAAGTGGGTTT	NA	False	NA	-27	True	AATAAA	-12	NA	122959357	122925793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_106186.known	chr5	-	2760	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	0	0	0	0	multi-exon	TRUE	canonical	3	1165	junction_8	284.126264845403	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCATCCTCTTAAATC	NA	False	NA	NA	False	AATAAA	-2	NA	122959402	122925521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_106192.known	chr5	-	3376	16	FSM	ENSMUSG00000029472.14	ENSMUST00000196423.5	3376	16	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_7	355.400894140062	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959343	122925783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_106206.known	chr5	-	1174	7	FSM	ENSMUSG00000029472.14	ENSMUST00000200058.5	1174	7	0	0	0	0	multi-exon	FALSE	canonical	3	1753	junction_2	189.823382823789	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATTTTATTTTTAAAA	NA	False	NA	NA	False	AAGAAA	-6	NA	122959081	122943906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_106207.nic	chr5	-	2363	6	NIC	ENSMUSG00000029472.14	novel	1174	7	NA	NA	-1	3	intron_retention	FALSE	canonical	3	1753	junction_1	207.934027999267	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTTTATTTTTAAAATAG	NA	False	NA	NA	False	AAGAAA	-9	NA	122959403	122943903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_106210.known	chr5	-	2422	17	FSM	ENSMUSG00000029472.14	ENSMUST00000196640.5	2422	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	562.145162385793	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959350	122925783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_122926082_122926364_122926504_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_106211.known	chr5	-	5180	23	FSM	ENSMUSG00000029475.18	ENSMUST00000046073.16	5180	23	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_20	155.859758959168	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGTTTGAGGGTTTC	9384	False	NA	NA	False	TATAAA	-24	NA	123127162	123008727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123070529_123071015_123072795_123072923_123079015_123079132_123085789_123085944_123087132_123087227_123099075_123099183_123099472_123099652_123120839_123120887_123122524_123122604_123125724_123125870_123126930
transcript_106214.known	chr5	-	4999	23	FSM	ENSMUSG00000029475.18	ENSMUST00000086200.11	4999	23	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_22	156.230069803299	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAAATCTACAC	9950	False	NA	NA	False	TATAAA	-8	NA	123126596	123008743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123070529_123071015_123072795_123072923_123079015_123079132_123085789_123085944_123087132_123087227_123099075_123099183_123099472_123099652_123120839_123120887_123122524_123122604_123125724_123125870_123126529
transcript_106223.nic	chr5	-	3659	13	NIC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	-44	0	intron_retention	FALSE	canonical	3	58	junction_12	99.7441170640599	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	NA	False	NA	NA	False	TATAAA	-21	NA	123060214	123008730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123059967
transcript_106226.known	chr5	-	3532	12	FSM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_11	40.2726246663991	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	8594	False	NA	NA	False	TATAAA	-21	NA	123038418	123008730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123038211
transcript_106243.nic	chr5	-	1349	8	ISM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	-54	9967	-54	0	5prime_fragment	FALSE	canonical	3	252	junction_7	34.7850542618522	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAACAAGGAGCTGAGCA	8540	False	NA	NA	False	AAAAAG	-27	NA	123038472	123018697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123038211
transcript_106248.known	chr5	+	4440	6	FSM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_1	16.3389106124001	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCTGCAGATGGTGTGTG	514	False	NA	NA	False	ACTAAA	-16	NA	122988110	123009354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
transcript_106249.nic	chr5	+	1883	5	NIC	ENSMUSG00000029474.8	novel	4440	6	NA	NA	-8	-2346	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	85.4005269304587	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	506	False	NA	9	True	AATAAA	-16	NA	122988102	123007008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_122988362_123002049_123002458_123004864_123004970_123005182_123005385_123006099
transcript_106254.known	chr5	+	1875	2	FSM	ENSMUSG00000049686.15	ENSMUST00000121652.8	1875	2	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTACCGAGTTGTTTCTT	4874	False	NA	NA	False	ATTAAA	-2	NA	123153136	123168519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_123153630_123167137
transcript_106260.known	chr5	+	2164	12	FSM	ENSMUSG00000054434.15	ENSMUST00000067505.15	2164	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	11.7768508046945	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCCCTGCCCAGCCTGC	NA	False	NA	NA	False	NA	NA	NA	123214337	123255812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_123214559_123236237_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484_123242575_123252164_123252231_123252630_123252693_123253162_123253256_123253723_123253789_123254264_123254334_123254706
transcript_106270.known	chr5	+	703	6	FSM	ENSMUSG00000054434.15	ENSMUST00000160489.8	703	6	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	14.0911319630468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGAGACCATGCCTGATA	NA	False	NA	NA	False	NA	NA	NA	123214413	123242650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_123214559_123236237_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484
transcript_106271.known	chr5	-	2208	5	FSM	ENSMUSG00000029449.12	ENSMUST00000031401.6	2208	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGTAATGGCACTTTTT	NA	False	NA	NA	False	NA	NA	NA	123270755	123256240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123257658_123258358_123258494_123258573_123258684_123269929_123270018_123270297
transcript_106273.known	chr5	-	1017	2	FSM	ENSMUSG00000090086.8	ENSMUST00000160099.2	1017	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCTGGATCCGAGCTCT	NA	False	NA	NA	False	NA	NA	NA	123278352	123275533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123276130_123277931
transcript_106275.known	chr5	+	2597	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	18.6868938028769	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTCTTGGGATCAGC	NA	False	NA	NA	False	TTTAAA	-13	NA	123366252	123388194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
transcript_106279.nnic	chr5	+	1288	5	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	-31	435	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	81.8183964643649	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTGTCAGTATATTC	NA	False	NA	23	True	NA	NA	NA	123366289	123387025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_123366508_123377604_123377814_123379894_123379997_123384256_123384346_123386355
transcript_106282.known	chr5	+	774	1	FSM	ENSMUSG00000029440.16	ENSMUST00000196137.2	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123366320	123367094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_123366300_123367100
transcript_106288.known	chr5	+	4718	6	FSM	ENSMUSG00000029438.10	ENSMUST00000031391.9	4718	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	4.53431361950185	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGAATTGTAATGTAAATAA	NA	False	NA	NA	False	NA	NA	NA	123482510	123513055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_123482785_123489929_123490012_123494003_123494101_123499253_123499422_123507395_123507518_123509080
transcript_106291.known	chr5	+	4642	3	FSM	ENSMUSG00000029438.10	ENSMUST00000117971.2	4642	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAGAAGAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	123482562	123498341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_123482785_123489929_123490012_123494003
transcript_106295.known	chr5	-	1576	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8922	False	NA	-12	True	AATAAA	-25	NA	123662239	123649767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_106298.known	chr5	-	719	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111586.8	719	6	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	270.536208297522	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAGAAAAATCTTAA	8965	False	NA	NA	False	ATTAAA	-14	NA	123662196	123654326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123654516_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_106299.known	chr5	-	1663	5	FSM	ENSMUSG00000029433.17	ENSMUST00000139398.8	1663	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	57.6649807075317	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8956	False	NA	-12	True	AATAAA	-25	NA	123662205	123649767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123650771_123655799_123656129_123658103_123658236_123661317_123661445_123662133
transcript_106300.known	chr5	-	681	5	FSM	ENSMUSG00000029433.17	ENSMUST00000031385.7	681	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	56.3493566955294	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATAACATTATTTCCTT	8965	False	NA	NA	False	NA	NA	NA	123662196	123655648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_106302.known	chr5	-	2588	4	FSM	ENSMUSG00000029433.17	ENSMUST00000145152.8	2588	4	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_1	60.8659729788875	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATACAGACTAAAGGTTT	8962	False	NA	NA	False	NA	NA	NA	123662199	123653865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123656129_123658103_123658236_123661317_123661445_123662133
transcript_106307.known	chr5	-	4235	13	FSM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	0	0	0	0	multi-exon	TRUE	canonical	3	140	junction_1	30.3840007240653	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCCCTGCCGGCCTGAC	10000	False	NA	NA	False	AAAAAG	-3	NA	123711101	123666721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123669285_123669887_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
transcript_106313.known	chr5	-	6133	24	FSM	ENSMUSG00000049550.18	ENSMUST00000111566.9	6133	24	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	12.0135399352954	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTGGTTGGTTTTTGG	9609	False	NA	-5	True	AATAAA	-18	NA	123822681	123715857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
transcript_106326.nic	chr5	-	3056	14	ISM	ENSMUSG00000049550.18	ENSMUST00000111566.9	6133	24	262	39911	-31	0	5prime_fragment	FALSE	canonical	3	32	junction_5	8.18860515825924	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACATGAAGAAGAAAAGA	9871	False	NA	NA	False	NA	NA	NA	123822419	123755768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
transcript_106327.nic	chr5	-	2819	14	ISM	ENSMUSG00000049550.18	ENSMUST00000111564.8	5609	24	-25	39911	-22	0	5prime_fragment	FALSE	canonical	3	18	junction_5	9.92635604734679	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACATGAAGAAGAAAAGA	9880	False	NA	NA	False	NA	NA	NA	123822410	123755768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768515_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
transcript_106328.nic	chr5	-	3235	14	ISM	ENSMUSG00000049550.18	ENSMUST00000111561.8	5883	25	-364	44081	-21	-4182	5prime_fragment	FALSE	canonical	2	3	junction_6	14.5382580368338	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAAACGACATTGCAGA	9588	False	NA	NA	False	NA	NA	NA	123822702	123759950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123773236_123773342_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
transcript_106333.nic	chr5	-	2852	13	ISM	ENSMUSG00000049550.18	ENSMUST00000111566.9	6133	24	257	44093	-36	-4182	5prime_fragment	FALSE	canonical	3	32	junction_4	8.31998931623246	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAAACGACATTGCAGA	9866	False	NA	NA	False	NA	NA	NA	123822424	123759950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956_123794150_123822314
transcript_10634.known	chr10	-	2141	1	FSM	ENSMUSG00000020277.11	ENSMUST00000220304.2	2141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCAAAACAAAAAAACCAATT	NA	False	NA	NA	False	AAAAAG	-27	NA	77845570	77843429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_77843400_77845600
transcript_106348.known	chr5	-	4286	14	FSM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	0	0	0	0	multi-exon	FALSE	non_canonical	2	263	junction_13	50.4357344906314	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTGTATCCAAGTTCCT	6397	False	NA	NA	False	AATAAA	-13	NA	123859107	123836364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
transcript_10635.known	chr10	+	1676	13	FSM	ENSMUSG00000000730.14	ENSMUST00000000746.12	1676	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	3.51484945149386	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTCTGGTGTGGTGTGTG	5591	False	NA	29	True	AATATA	-21	NA	77885675	77899456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77885746_77885849_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
transcript_106359.known	chr5	-	4350	14	FSM	ENSMUSG00000029427.12	ENSMUST00000196282.5	4350	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	111.512569939168	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAAGTTCCTTTTTTTTT	6341	False	NA	NA	False	AATAAA	-21	NA	123859163	123836356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857598_123858785
transcript_10636.known	chr10	+	1657	12	FSM	ENSMUSG00000000730.14	ENSMUST00000151242.8	1657	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	3.67029622512479	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTAGTGTTCTGGTGTGG	5708	False	NA	23	True	AATATA	-15	NA	77885792	77899450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
transcript_106362.known	chr5	-	2344	12	FSM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	200.336700053759	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4346	False	NA	NA	False	AATAAA	-15	NA	123887452	123866488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_106367.known	chr5	-	1685	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTTTTTAGTTCATGA	4364	False	NA	NA	False	ATTAAA	-22	NA	123887434	123867029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_106371.known	chr5	-	2270	11	FSM	ENSMUSG00000029422.16	ENSMUST00000057795.12	2270	11	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	167.947640650293	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCATTGTATGCTAT	4323	False	NA	NA	False	AATAAA	-11	NA	123887475	123866492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
transcript_106373.known	chr5	-	1595	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	0	0	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCACTTCCATTAAAC	4321	False	NA	NA	False	NA	NA	NA	123887477	123867069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
transcript_106383.known	chr5	-	942	8	FSM	ENSMUSG00000029422.16	ENSMUST00000182015.8	942	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	186.8876121947	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAGGAAATGGTTGAAA	4354	False	NA	NA	False	AAGAAA	-15	NA	123887444	123871665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
transcript_106386.nic	chr5	-	895	7	ISM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	-20	4596	-20	0	5prime_fragment	FALSE	canonical	3	403	junction_4	51.9018839306971	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAGGAAATGGTTGAAA	4301	False	NA	NA	False	AAGAAA	-15	NA	123887497	123871665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
transcript_106389.known	chr5	-	4223	8	FSM	ENSMUSG00000029422.16	ENSMUST00000111515.8	4223	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	206.801788173692	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAACAGAACCCAAA	4323	False	NA	NA	False	NA	NA	NA	123887475	123871431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_106390.nic	chr5	-	862	6	ISM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	-20	7552	-20	56	5prime_fragment	FALSE	canonical	3	403	junction_3	55.0730424073339	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACGTATCTTTTCCCATGT	4301	False	NA	NA	False	NA	NA	NA	123887497	123874621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
transcript_106391.nic	chr5	-	739	5	ISM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	-20	10485	-20	179	5prime_fragment	FALSE	canonical	3	403	junction_2	54.398988961193	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGTTTATTATCCTGA	4301	False	NA	NA	False	NA	NA	NA	123887497	123877554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
transcript_106394.nic	chr5	-	486	4	ISM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	-20	11714	-20	101	5prime_fragment	FALSE	canonical	3	403	junction_1	62.8065813961138	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTCATCACGGGGCAGA	4301	False	NA	NA	False	ATTAAA	-42	NA	123887497	123878783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_123878926_123881700_123881742_123883017_123883175_123887351
transcript_106395.known	chr5	-	2071	4	FSM	ENSMUSG00000029422.16	ENSMUST00000182612.2	2071	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_3	208.439173115057	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	4354	False	NA	NA	False	NA	NA	NA	123887444	123880013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123881742_123883017_123883175_123883559_123883653_123887351
transcript_106398.known	chr5	-	1980	3	FSM	ENSMUSG00000029422.16	ENSMUST00000183253.8	1980	3	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_2	57.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4354	False	NA	NA	False	NA	NA	NA	123887444	123880011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123881742_123883017_123883175_123887351
transcript_106405.known	chr5	-	765	6	FSM	ENSMUSG00000029422.16	ENSMUST00000182411.8	765	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	198.976782565203	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCCTTCAGAGGCAGAAA	4364	False	NA	NA	False	NA	NA	NA	123887434	123874677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123874745_123877554_123877759_123878734_123878948_123881700_123881742_123883017_123883175_123887351
transcript_106406.known	chr5	-	815	7	FSM	ENSMUSG00000029422.16	ENSMUST00000182241.2	815	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	191.676811325731	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCAAGAAGATTTAGC	4323	False	NA	NA	False	NA	NA	NA	123887475	123874724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123887351
transcript_106407.known	chr5	+	6961	64	FSM	ENSMUSG00000029414.12	ENSMUST00000031366.12	6961	64	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_8	72.5550989140863	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTTTCTTGTGTCATT	NA	False	NA	29	True	AATAAA	-21	NA	123887788	123959656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_123887888_123891885_123892061_123893736_123893858_123895861_123895978_123896505_123896585_123897083_123897162_123898395_123898431_123898665_123898780_123900575_123900670_123901857_123901911_123902177_123902294_123903059_123903115_123903974_123904074_123905832_123905877_123905981_123906048_123906354_123906431_123907675_123907802_123907915_123908006_123909150_123909205_123910148_123910211_123911999_123912112_123913765_123913910_123914455_123914513_123914601_123914704_123916094_123916212_123916307_123916452_123917690_123917790_123919012_123919117_123919208_123919309_123919716_123919852_123920904_123921025_123922243_123922317_123923472_123923541_123924097_123924379_123924951_123925125_123925569_123925668_123927080_123927220_123928177_123928235_123928955_123929120_123929562_123929668_123932206_123932336_123934098_123934216_123934575_123934686_123935676_123935882_123937863_123937954_123939857_123940030_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
transcript_10641.nic	chr10	-	2258	6	ISM	ENSMUSG00000000731.16	ENSMUST00000131028.8	2966	14	5300	8	-50	0	3prime_fragment	FALSE	canonical	2	9	junction_4	3.86781592116274	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGTACACCTGGTGGA	NA	False	NA	-9	True	ATTAAA	-16	NA	77874144	77865864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77871668_77872518_77872619_77873706
transcript_106420.known	chr5	+	347	2	FSM	ENSMUSG00000029414.12	ENSMUST00000199838.2	347	2	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACCCGTGTCTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	123887778	123892123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_123887888_123891885
transcript_106426.known	chr5	+	2339	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	0	0	0	0	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCGCTAACTGAATTTG	8978	False	NA	NA	False	AATGAA	-2	NA	124045237	124066898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
transcript_106436.known	chr5	+	338	3	FSM	ENSMUSG00000023106.16	ENSMUST00000168899.2	338	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	759	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTGGGGATAGTGAAGG	9072	False	NA	NA	False	NA	NA	NA	124045331	124046571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124045430_124046162_124046278_124046446
transcript_106437.known	chr5	+	622	3	FSM	ENSMUSG00000061882.13	ENSMUST00000166983.3	622	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTCTGTCCA	NA	False	NA	NA	False	ATTAAA	-27	NA	124068751	124074708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124068924_124072134_124072328_124074451
transcript_106438.known	chr5	+	474	2	FSM	ENSMUSG00000023106.16	ENSMUST00000171639.2	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTGTTGGAAGCTAAGG	9085	False	NA	NA	False	NA	NA	NA	124045344	124046551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124045430_124046162
transcript_106439.known	chr5	+	3962	1	FSM	ENSMUSG00000023106.16	ENSMUST00000198321.2	3962	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9078	False	NA	NA	False	NA	NA	NA	124045337	124049299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124045300_124049300
transcript_106441.known	chr5	+	6735	32	FSM	ENSMUSG00000000915.16	ENSMUST00000000939.15	6735	32	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_6	6.64046185222248	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGAGTATCTTTTTTTCT	NA	False	NA	NA	False	AGTAAA	-3	NA	124111690	124143621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124111919_124127367_124127432_124127653_124127797_124127999_124128057_124129004_124129086_124129500_124129578_124129806_124129869_124132780_124132922_124133958_124134017_124134101_124134178_124134293_124134435_124134582_124134645_124134833_124134907_124134993_124135178_124135266_124135356_124135426_124135544_124135613_124135716_124135920_124136116_124136848_124136997_124137104_124137192_124137545_124137654_124137833_124137971_124138202_124138314_124138408_124138468_124138664_124138696_124138774_124138838_124139054_124139156_124139268_124139375_124139487_124139612_124139693_124139756_124139850_124140058_124140180
transcript_106448.known	chr5	-	2522	4	FSM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	15.8394724940223	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGTGTTTCTCTCAT	2236	False	NA	-1	True	AATAAA	-20	NA	124170333	124142703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124144802_124145671_124145755_124148750_124148923_124170164
transcript_106452.known	chr5	+	1596	7	FSM	ENSMUSG00000023707.14	ENSMUST00000024470.13	1596	7	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_5	17.423642940939	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTTTGCTATTATTTAA	NA	False	NA	12	True	TATAAA	-17	NA	124250359	124253546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252450_124252709_124252777
transcript_106454.known	chr5	+	1474	7	FSM	ENSMUSG00000023707.14	ENSMUST00000119269.6	1474	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	31.3421973277773	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCCTCTGTTTGCTAT	NA	False	NA	5	True	TATAAA	-10	NA	124250383	124253539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252541_124252709_124252777
transcript_106460.known	chr5	+	818	6	FSM	ENSMUSG00000023707.14	ENSMUST00000198770.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	30.8506077735918	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGACTTGAGCCTGGTTC	NA	False	NA	-93	True	NA	NA	NA	124250493	124253030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252450_124252709_124252777
transcript_106462.known	chr5	+	600	6	FSM	ENSMUSG00000023707.14	ENSMUST00000198505.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	36.149688795341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCCTGCACCGTGGCGGC	NA	False	NA	NA	False	NA	NA	NA	124250419	124252829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252541_124252709_124252777
transcript_106464.known	chr5	+	708	5	FSM	ENSMUSG00000023707.14	ENSMUST00000131094.8	708	5	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_4	13.2759180473518	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCCTTCCTAGGTACTGA	NA	False	NA	NA	False	NA	NA	NA	124250402	124252437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127
transcript_106470.nic	chr5	+	1025	6	NIC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	229.659399981799	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254139	124256259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_124254308_124254496_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
transcript_106472.known	chr5	+	1192	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_1	46.874833333037	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254161	124256259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
transcript_106473.nnic	chr5	+	1152	5	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-11	0	intron_retention	FALSE	canonical	3	22	junction_1	256.087265399902	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254140	124256259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_124254675_124255038_124255257_124255333_124255452_124255892_124255963_124256047
transcript_106474.known	chr5	+	982	5	FSM	ENSMUSG00000029404.16	ENSMUST00000122394.8	982	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	259.116286635943	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGTGCCTTTCCTACAG	NA	False	NA	-76	True	NA	NA	NA	124254184	124256159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124254588_124254977_124255257_124255333_124255452_124255892_124255963_124256047
transcript_10648.known	chr10	+	2814	7	FSM	ENSMUSG00000000732.10	ENSMUST00000105393.3	2814	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	4.83045891539648	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTCTGGTGGCTT	NA	False	NA	5	True	AATAAA	-17	NA	77905135	77915359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_77905370_77906994_77907114_77907571_77907926_77909540_77909835_77911038_77911189_77912977_77913008_77913726
transcript_106481.known	chr5	+	462	3	FSM	ENSMUSG00000029404.16	ENSMUST00000149835.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	242.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGAGGAAGAAGAAGAA	NA	False	NA	5	True	NA	NA	NA	124254151	124255105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124254308_124254496_124254675_124254977
transcript_106483.nic	chr5	+	681	2	ISM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	-40	1154	-30	0	5prime_fragment	FALSE	canonical	3	507	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGAGGAAGAAGAAGAA	NA	False	NA	5	True	NA	NA	NA	124254121	124255105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_124254675_124254977
transcript_106489.known	chr5	-	5008	23	FSM	ENSMUSG00000038126.18	ENSMUST00000184951.8	5008	23	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_21	8.45259019423842	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTTTTGATTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	124465915	124391730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124393182_124397008_124397078_124398030_124398279_124398997_124399099_124399984_124400106_124400951_124401099_124403379_124403559_124405101_124405237_124421696_124421799_124423531_124423597_124424439_124424488_124428908_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124454144_124454235_124458907_124459062_124462936_124463201_124465848
transcript_106491.known	chr5	-	5959	23	FSM	ENSMUSG00000038126.18	ENSMUST00000147737.8	5959	23	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_21	7.18368790391303	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCAATCTCAGTGAGCC	NA	False	NA	NA	False	ATTAAA	-15	NA	124465912	124390732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124393182_124397008_124397078_124398030_124398279_124398997_124399099_124399984_124400106_124400951_124401099_124403379_124403559_124405101_124405237_124421696_124421799_124423531_124423597_124424439_124424488_124428908_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124454144_124454235_124458907_124459018_124462936_124463201_124465848
transcript_106496.nic	chr5	-	3304	20	ISM	ENSMUSG00000038126.18	ENSMUST00000147737.8	5959	23	-112	8266	11	4	5prime_fragment	FALSE	canonical	3	31	junction_18	7.68385002759277	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTATCTTTTCCTAAAAATT	NA	False	NA	NA	False	NA	NA	NA	124466024	124398998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_124399099_124399984_124400106_124400951_124401099_124403379_124403559_124405101_124405237_124421696_124421799_124423531_124423597_124424439_124424488_124428908_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124454144_124454235_124458907_124459018_124462936_124463201_124465848
transcript_1065.nic	chr1	-	2295	10	NIC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	22	-1088	intron_retention	FALSE	canonical	3	484	junction_1	32.9256551253289	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCGGTGTGTGGCTCTGA	NA	False	NA	-19	True	TATAAA	-26	NA	36749067	36738282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
transcript_10650.known	chr10	-	1378	7	FSM	ENSMUSG00000053329.8	ENSMUST00000001242.9	1378	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	5.05799696849784	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGTCTCAGGCCTTGTG	4131	False	NA	-2	True	AATAAA	-29	NA	78005616	77997899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_77998553_77999230_77999388_78000671_78000765_78003228_78003349_78004642_78004757_78005206_78005260_78005428
transcript_106501.known	chr5	-	7747	22	FSM	ENSMUSG00000038126.18	ENSMUST00000031344.13	7747	22	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_19	11.2106201672855	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCGTGGTATCTGTGAGC	NA	False	NA	-4	True	NA	NA	NA	124466035	124389021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124393182_124397008_124397078_124398030_124398279_124398997_124399099_124399984_124400106_124400951_124401099_124403379_124403559_124405101_124405237_124421696_124421799_124423531_124423597_124424439_124424488_124428908_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124458907_124459062_124462936_124463201_124465848
transcript_106508.nic	chr5	-	3011	18	ISM	ENSMUSG00000038126.18	ENSMUST00000147737.8	5959	23	-40	10219	-19	-944	5prime_fragment	FALSE	canonical	3	31	junction_16	7.86741341049435	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGAGATGTGTGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	124465952	124400951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_124401099_124403379_124403559_124405101_124405237_124421696_124421799_124423531_124423597_124424439_124424488_124428908_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124454144_124454235_124458907_124459018_124462936_124463201_124465848
transcript_10651.known	chr10	-	632	6	FSM	ENSMUSG00000053329.8	ENSMUST00000219120.2	632	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.8808601901906	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAGACCAGAAAAACAAGG	4139	False	NA	NA	False	NA	NA	NA	78005608	77998544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_77998553_77999230_77999388_78003228_78003349_78004642_78004757_78005206_78005260_78005428
transcript_106513.nic	chr5	-	2182	12	ISM	ENSMUSG00000038126.18	ENSMUST00000147737.8	5959	23	-22	38311	-1	0	5prime_fragment	FALSE	canonical	3	31	junction_10	5.80111132128866	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAGGAGAAAGATAACAC	NA	False	NA	NA	False	AAGAAA	-12	NA	124465934	124429043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124454144_124454235_124458907_124459018_124462936_124463201_124465848
transcript_106523.known	chr5	+	1677	3	FSM	ENSMUSG00000047635.7	ENSMUST00000077376.3	1677	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	7.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCGAGGAAGCTGTGG	5398	False	NA	17	True	NA	NA	NA	124466160	124479907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124466293_124476689_124476999_124478671
transcript_106525.known	chr5	+	1637	2	FSM	ENSMUSG00000047635.7	ENSMUST00000111477.2	1637	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCCTGAGTTTAATTCC	5389	False	NA	NA	False	NA	NA	NA	124466151	124478185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124466293_124476689
transcript_106526.known	chr5	-	1315	4	FSM	ENSMUSG00000029394.12	ENSMUST00000031341.11	1315	4	0	0	0	0	multi-exon	FALSE	canonical	3	1091	junction_3	81.9308651648856	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGAGGTCTTAAGTGCT	4254	False	NA	2	True	AATAAA	-38	NA	124492734	124483479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124484218_124486663_124486791_124488140_124488236_124492379
transcript_106527.known	chr5	-	10161	32	FSM	ENSMUSG00000038095.16	ENSMUST00000199808.5	10161	32	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_29	101.260073560108	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTTGTGGTGTTGTG	NA	False	NA	43	True	AATAAA	-15	NA	124563673	124506770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
transcript_106528.known	chr5	-	10071	32	FSM	ENSMUSG00000038095.16	ENSMUST00000065263.12	10071	32	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_31	128.473127279141	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGGTGTTGTGGTTTGG	NA	False	NA	49	True	AATAAA	-21	NA	124563977	124506764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
transcript_10653.known	chr10	-	568	4	FSM	ENSMUSG00000053329.8	ENSMUST00000218286.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	4.98887651569859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCTGAGTGGCTTGACC	4177	False	NA	NA	False	NA	NA	NA	78005570	78003089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78003349_78004642_78004757_78005206_78005260_78005428
transcript_106536.nic	chr5	-	2548	18	ISM	ENSMUSG00000038095.16	ENSMUST00000199808.5	10161	32	-10	24242	-10	0	5prime_fragment	FALSE	canonical	3	126	junction_15	113.969157486276	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563683	124531012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
transcript_106537.known	chr5	-	2511	18	FSM	ENSMUSG00000038095.16	ENSMUST00000196644.5	2511	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_17	149.186374694419	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAAGAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	124564064	124531030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
transcript_106539.known	chr5	-	2413	17	FSM	ENSMUSG00000038095.16	ENSMUST00000200474.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_15	101.972863271314	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563656	124531012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124552461_124552591_124563509
transcript_106540.nic	chr5	-	2438	17	NIC	ENSMUSG00000038095.16	novel	2511	18	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_16	125.514379156334	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124564078	124531012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563909
transcript_106542.nic	chr5	-	2821	17	ISM	ENSMUSG00000038095.16	ENSMUST00000199808.5	10161	32	-340	25093	7	-833	5prime_fragment	FALSE	canonical	3	126	junction_14	117.361604001266	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTATTTCACTGACGC	NA	False	NA	NA	False	NA	NA	NA	124564013	124531863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
transcript_106551.nic	chr5	-	2390	16	NIC	ENSMUSG00000038095.16	novel	10161	32	NA	NA	-14	-833	combination_of_known_junctions	FALSE	canonical	3	243	junction_14	70.7802860186994	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTATTTCACTGACGC	NA	False	NA	NA	False	NA	NA	NA	124563687	124531863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563509
transcript_106554.nic	chr5	-	2663	16	ISM	ENSMUSG00000038095.16	ENSMUST00000199808.5	10161	32	-405	27215	-14	0	5prime_fragment	FALSE	canonical	3	126	junction_13	120.305647784669	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAATAAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124564078	124533985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
transcript_106555.nic	chr5	-	2263	16	ISM	ENSMUSG00000038095.16	ENSMUST00000196644.5	2511	18	-14	2955	-14	0	5prime_fragment	FALSE	canonical	3	24	junction_15	156.925035181346	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAATAAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124564078	124533985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
transcript_106557.nic	chr5	-	2558	15	NIC	ENSMUSG00000038095.16	novel	2100	15	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	243	junction_13	72.8199134572293	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAATAAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124564078	124533985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563509
transcript_106558.known	chr5	-	2100	15	FSM	ENSMUSG00000038095.16	ENSMUST00000196329.5	2100	15	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_14	133.161556013738	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAATAAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124564020	124533985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563909
transcript_106562.known	chr5	-	2033	1	FSM	ENSMUSG00000038095.16	ENSMUST00000197974.2	2033	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124563605	124561572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124561600_124563600
transcript_106564.known	chr5	+	2739	8	FSM	ENSMUSG00000049327.18	ENSMUST00000059580.11	2739	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	242.120647949045	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGTTGTTGTTGTTA	NA	False	NA	29	True	AATAAA	-38	NA	124577992	124600371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124578079_124584031_124584148_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
transcript_106572.known	chr5	+	1789	7	FSM	ENSMUSG00000049327.18	ENSMUST00000199798.5	1789	7	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	269.798330033544	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATCAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-14	NA	124578029	124599574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124578079_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
transcript_106575.known	chr5	+	1425	7	FSM	ENSMUSG00000049327.18	ENSMUST00000100709.7	1425	7	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_1	170.424388578109	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTTTTTGTACCTTTTT	4396	False	NA	91	True	NA	NA	NA	124583555	124599023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124583792_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
transcript_106577.known	chr5	+	1271	1	FSM	ENSMUSG00000049327.18	ENSMUST00000196860.2	1271	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAAAGTATCTAG	NA	False	NA	NA	False	NA	NA	NA	124578047	124579318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124578000_124579300
transcript_106578.known	chr5	-	1391	4	FSM	ENSMUSG00000029401.9	ENSMUST00000031347.8	1391	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	3.55902608401044	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAACGCATGTGTATCCAA	NA	False	NA	48	True	AATAAA	-24	NA	124616429	124601327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124601875_124606649_124606755_124607760_124607913_124615842
transcript_10658.nnic	chr10	-	3757	21	NNC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	-11	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	50.5147503210696	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	-5	True	AATACA	-17	NA	78020994	78006742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014302_78014811_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
transcript_106580.known	chr5	+	1115	2	FSM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGAGGTGGGGTTTGT	2220	False	NA	10	True	AATAAA	-24	NA	124621196	124629187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124621310_124628185
transcript_106581.known	chr5	+	1181	2	FSM	ENSMUSG00000029402.9	ENSMUST00000111453.2	1181	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTCCCTTTCTCACACCT	2544	False	NA	-7	True	AATAAA	-7	NA	124621520	124629170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124621717_124628185
transcript_106584.known	chr5	-	2249	7	FSM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	6.39661368746516	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTCCTGTGTGCCTTT	NA	False	NA	2	True	NA	NA	NA	124669454	124631142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124631908_124639902_124639996_124641617_124641797_124652581_124652807_124653580_124653700_124659313_124659465_124668737
transcript_106587.nic	chr5	-	1377	4	ISM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	-69	21343	-69	-20759	5prime_fragment	FALSE	canonical	3	33	junction_1	7.11805216802087	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGAATGTGTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	124669523	124652485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_124652807_124653580_124653700_124659313_124659465_124668737
transcript_106589.nnic	chr5	+	2097	5	NNC	ENSMUSG00000029390.14	novel	455	5	NA	NA	73	0	intron_retention	FALSE	canonical	2	13	junction_1	1734.95151229076	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTATTTTGTGTTT	NA	False	NA	2	True	AATAAA	-12	NA	124678830	124688559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_124679105_124680714_124680821_124681034_124681228_124684958_124685067_124687143
transcript_106591.known	chr5	+	2074	4	FSM	ENSMUSG00000029390.14	ENSMUST00000060226.11	2074	4	0	0	0	0	multi-exon	FALSE	canonical	3	3477	junction_2	89.3395520223577	2934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGTTTTATATTAATG	NA	False	NA	12	True	AATAAA	-22	NA	124678757	124688569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124679105_124681034_124681228_124684958_124685067_124687143
transcript_106594.known	chr5	+	735	4	FSM	ENSMUSG00000029390.14	ENSMUST00000124529.8	735	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1659.22692842179	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGCCCCATTATATAGGC	NA	False	NA	NA	False	NA	NA	NA	124679391	124687473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124679496_124681034_124681228_124684958_124685067_124687143
transcript_106597.known	chr5	+	2799	14	FSM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	12.5669803088427	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATCATTTTTTTTCTCC	NA	False	NA	5	True	AATAAA	-18	NA	124690926	124707723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897_124706191_124706618
transcript_10660.known	chr10	-	3872	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	-5	True	AATACA	-17	NA	78020983	78006742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
transcript_106604.nic	chr5	+	1557	13	ISM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	-35	1705	-35	0	5prime_fragment	FALSE	canonical	3	73	junction_5	12.3454332537267	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAAGATAAAATTAGAG	NA	False	NA	NA	False	NA	NA	NA	124690891	124706018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897
transcript_106605.nic	chr5	+	1615	13	ISM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	-35	1647	-35	58	5prime_fragment	FALSE	canonical	3	73	junction_5	12.3454332537267	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGGTCAGAAAATGAAGG	NA	False	NA	NA	False	AAAAAG	-5	NA	124690891	124706076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897
transcript_106606.nic	chr5	+	1691	13	ISM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	-35	1571	-35	134	5prime_fragment	FALSE	canonical	3	73	junction_5	12.3454332537267	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGAAGATGAATGCA	NA	False	NA	NA	False	AATAAA	-32	NA	124690891	124706152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897
transcript_106610.known	chr5	+	3516	12	FSM	ENSMUSG00000029389.18	ENSMUST00000131631.8	3516	12	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_4	12.0686740183826	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAAGATAAAATTAGAG	NA	False	NA	NA	False	NA	NA	NA	124690931	124706018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124691103_124692605_124692657_124692733_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897
transcript_106611.nic	chr5	+	1045	3	ISM	ENSMUSG00000029389.18	ENSMUST00000144433.2	477	5	-129	5331	-35	-1637	5prime_fragment	FALSE	canonical	3	110	junction_2	0.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCAGCATTGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	124690891	124693516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_124691103_124692605_124692657_124692733
transcript_106612.nic	chr5	+	1122	2	ISM	ENSMUSG00000029389.18	ENSMUST00000136067.8	445	4	-67	5275	-35	-1637	5prime_fragment	FALSE	canonical	3	111	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCAGCATTGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	124690891	124693516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_124691103_124692605
transcript_106614.nnic	chr5	-	1777	9	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	-2	-440	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	291.131172111473	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	-5	True	AATAAA	-17	NA	124717097	124708715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712656_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124716766
transcript_106615.known	chr5	-	2013	9	FSM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	226.339761199839	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCAGGCTATGTGAACTT	NA	False	NA	NA	False	NA	NA	NA	124717194	124708275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
transcript_106628.nnic	chr5	+	1972	14	NNC	ENSMUSG00000029387.11	novel	2672	13	NA	NA	-50	254	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	271.182486212518	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTTTCCTTAGAGTGTT	NA	False	NA	19	True	AATAAA	-20	NA	124717152	124734904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_124717265_124720510_124720591_124721585_124721675_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
transcript_106632.known	chr5	+	2672	13	FSM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	79.1684210331928	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTTTGTTGTTGTTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	124717202	124735743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
transcript_106640.known	chr5	+	2735	18	FSM	ENSMUSG00000118662.2	ENSMUST00000239501.2	2735	18	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_8	6.97499240366195	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGATGGTGGTGATGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	124736811	124765803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124737020_124737197_124737306_124737769_124737847_124740077_124740274_124741810_124741912_124745798_124745996_124746581_124746706_124748332_124748475_124750706_124750773_124753213_124753349_124754531_124754610_124757093_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
transcript_106652.known	chr5	+	5345	20	FSM	ENSMUSG00000038023.13	ENSMUST00000037865.13	5345	20	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_14	17.8821937464506	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTAGTTTTCTTGTGAT	NA	False	NA	10	True	AATAAA	-21	NA	124767116	124801519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782988_124783884_124783979_124784543_124784757_124789272_124789424_124789764_124789902_124790144_124790333_124790431_124790523_124791177_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
transcript_106664.nic	chr5	-	2092	5	NIC	ENSMUSG00000037979.14	novel	809	5	NA	NA	-94	-562	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	82.6177190437983	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTTTTCCTCCGAGTCT	NA	False	NA	-2	True	NA	NA	NA	124939582	124912043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_124913356_124913543_124913631_124916006_124916049_124916724_124916872_124939078
transcript_106666.known	chr5	-	2473	4	FSM	ENSMUSG00000037979.14	ENSMUST00000036206.14	2473	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	9.0921211313239	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGATGTGGTGGTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	124939488	124911481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_124913356_124916006_124916049_124916724_124916872_124939078
transcript_106674.known	chr5	+	4092	4	FSM	ENSMUSG00000079215.9	ENSMUST00000111417.9	4092	4	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	10.2089285540757	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATGTTTCCTGTGTGGT	NA	False	NA	8	True	NA	NA	NA	124939754	124965694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_124939947_124940417_124940573_124961771_124961837_124962014
transcript_106684.nic	chr5	-	2758	10	NIC	ENSMUSG00000029478.17	novel	8575	47	NA	NA	-83	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_9	34.2023751972842	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGTTTCTACTCTGCTTC	2263	False	NA	-7	True	AATATA	-10	NA	125104071	125094225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_125095413_125095874_125096055_125096882_125097111_125099934_125099989_125100564_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103751
transcript_106689.known	chr5	-	2521	13	FSM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	0	0	0	0	multi-exon	TRUE	canonical	3	188	junction_1	171.680966232913	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	-1	True	AATAAA	-21	NA	125418158	125354150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
transcript_106692.known	chr5	-	2367	12	FSM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	58.8981471316135	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTGGCTTCTGTGACTG	NA	False	NA	-3	True	AATAAA	-19	NA	125418135	125354152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
transcript_106697.known	chr5	-	2082	11	FSM	ENSMUSG00000037936.16	ENSMUST00000148373.8	2082	11	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_7	41.8812607260097	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAATCAAAAAT	NA	False	NA	NA	False	NA	NA	NA	125418083	125360418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
transcript_106709.known	chr5	-	4760	27	FSM	ENSMUSG00000029480.14	ENSMUST00000169485.6	4760	27	0	0	0	0	multi-exon	TRUE	canonical	3	122	junction_21	17.4191708985502	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGACTATGCTCTTGATC	NA	False	NA	NA	False	AGTAAA	-16	NA	125511185	125490921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_125492231_125492364_125492463_125492929_125493004_125493087_125493183_125493363_125493502_125493595_125493711_125494485_125494659_125495513_125495631_125495722_125495848_125496024_125496214_125496297_125496405_125498071_125498184_125499182_125499416_125499668_125499746_125500490_125500636_125501688_125501766_125502002_125502099_125502485_125502601_125502735_125502838_125503714_125503829_125504496_125504594_125505377_125505471_125506225_125506375_125506768_125507109_125507882_125507996_125508660_125508831_125510998
transcript_106719.nic	chr5	-	2809	16	ISM	ENSMUSG00000029480.14	ENSMUST00000169485.6	4760	27	-60	6621	-60	3084	5prime_fragment	FALSE	canonical	3	122	junction_10	17.7668855521226	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAAAATGAAGGCTCTTG	NA	False	NA	NA	False	AAGAAA	-2	NA	125511245	125497542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_125498184_125499182_125499416_125499668_125499746_125500490_125500636_125501688_125501766_125502002_125502099_125502485_125502601_125502735_125502838_125503714_125503829_125504496_125504594_125505377_125505471_125506225_125506375_125506768_125507109_125507882_125507996_125508660_125508831_125510998
transcript_106722.nic	chr5	-	398	2	ISM	ENSMUSG00000029480.14	ENSMUST00000169485.6	4760	27	-60	17758	-60	-8053	5prime_fragment	FALSE	canonical	3	179	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAGAAGAAGAGCCAGG	NA	False	NA	NA	False	NA	NA	NA	125511245	125508679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_125508831_125510998
transcript_106723.known	chr5	+	745	4	FSM	ENSMUSG00000037905.14	ENSMUST00000198811.2	745	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	166.423823080979	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGACCGCTCCAAGGA	NA	False	NA	NA	False	NA	NA	NA	125518813	125531790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_125518957_125528733_125528837_125529211_125529310_125531389
transcript_106725.known	chr5	+	6473	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	23.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTGGATGGATTTCTT	NA	False	NA	30	True	AATAAA	-22	NA	125518631	125537434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_125518957_125528733_125528837_125531389
transcript_10673.known	chr10	-	5047	23	FSM	ENSMUSG00000000374.9	ENSMUST00000000384.8	5047	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_11	3.08823413662964	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGTATTTTTGTATATA	NA	False	NA	3	True	ATTAAA	-19	NA	78080475	78022558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78023929_78024589_78024785_78029192_78029371_78032121_78032293_78033571_78033699_78034877_78034979_78036451_78036682_78037265_78037425_78038713_78038856_78039714_78040227_78043267_78043381_78043725_78043867_78045217_78045310_78046211_78046289_78046597_78046713_78047309_78047457_78050401_78050650_78052983_78053096_78056022_78056219_78058497_78058695_78064612_78064749_78067287_78067370_78080269
transcript_106732.known	chr5	+	3239	18	FSM	ENSMUSG00000029482.5	ENSMUST00000031445.5	3239	18	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_4	14.7470013373196	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTACGCGTGTGTTTCTC	NA	False	NA	10	True	AATAAA	-27	NA	125552877	125594474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
transcript_106734.known	chr5	+	5134	9	FSM	ENSMUSG00000034324.17	ENSMUST00000119026.8	5134	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	1.8328597873269	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGTCTCGTGGGACGT	NA	False	NA	NA	False	ATTAAA	-21	NA	127318871	127642857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_127319085_127436618_127437505_127539967_127540115_127581925_127582110_127613421_127613566_127628566_127628773_127630137_127630412_127631689_127631882_127639969
transcript_106735.known	chr5	+	3413	12	FSM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_6	12.1383212585269	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATCTGGCTTGAATTGG	8701	False	NA	NA	False	NA	NA	NA	127709325	127786438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053_127768175_127771290_127771390_127783926
transcript_106754.known	chr5	-	2673	8	FSM	ENSMUSG00000029416.18	ENSMUST00000153832.8	2673	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_6	28.9418840620514	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAAGAGCTTCCTGATG	NA	False	NA	-8	True	TATAAA	-15	NA	127694482	127672730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127681601_127681713_127685835_127686126_127693878
transcript_106757.known	chr5	-	2732	8	FSM	ENSMUSG00000029416.18	ENSMUST00000031367.15	2732	8	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_6	13.4346490805814	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGAGCTTCCTGATGGTT	NA	False	NA	-5	True	TATAAA	-18	NA	127694480	127672727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127681601_127681771_127685835_127686126_127693878
transcript_106759.known	chr5	-	2370	7	FSM	ENSMUSG00000029416.18	ENSMUST00000124569.8	2370	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	43.0803512829998	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAAGAGCTTCCTGATG	NA	False	NA	-8	True	TATAAA	-15	NA	127694290	127672730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127685835_127686126_127693878
transcript_106763.nic	chr5	+	405	3	ISM	ENSMUSG00000049971.18	ENSMUST00000137157.8	1713	11	-93	41147	-93	-39116	5prime_fragment	TRUE	canonical	3	42	junction_2	9	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTCATGGGGAAAGTTC	8608	False	NA	NA	False	AAGAAA	-5	NA	127709232	127727819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_127709416_127721382_127721532_127727746
transcript_10677.nic	chr10	-	2064	14	ISM	ENSMUSG00000000374.9	ENSMUST00000000384.8	5047	23	-21	17487	-21	-2014	5prime_fragment	FALSE	canonical	2	6	junction_2	3.36357093985776	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTACCGGAAGACAGCCG	NA	False	NA	NA	False	NA	NA	NA	78080496	78040045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_78040227_78043267_78043381_78043725_78043867_78045217_78045310_78046211_78046289_78046597_78046713_78047309_78047457_78050401_78050650_78052983_78053096_78056022_78056219_78058497_78058695_78064612_78064749_78067287_78067370_78080269
transcript_106772.known	chr5	+	3250	1	FSM	ENSMUSG00000081683.6	ENSMUST00000117102.4	3250	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	542	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTAGTCACTGTGCATT	NA	False	NA	14	True	AATAAA	-17	NA	128677907	128681157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_128677900_128681200
transcript_106776.known	chr5	-	2939	11	FSM	ENSMUSG00000029428.14	ENSMUST00000031378.14	2939	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	6.30555310817378	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGTGCCTCCTCATTG	NA	False	NA	NA	False	ATTAAA	-27	NA	129085638	129061620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_129063495_129064781_129064907_129065865_129065977_129068027_129068166_129068266_129068341_129069243_129069353_129070558_129070633_129071859_129071935_129073425_129073526_129076573_129076652_129085457
transcript_106778.known	chr5	-	2769	10	FSM	ENSMUSG00000029428.14	ENSMUST00000100680.10	2769	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.0822267030912	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAATCGTTTGTGCCTCC	NA	False	NA	NA	False	ATTAAA	-21	NA	129085599	129061626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_129063495_129065865_129065977_129068027_129068166_129068266_129068341_129069243_129069353_129070558_129070633_129071859_129071935_129073425_129073526_129076573_129076652_129085457
transcript_106784.known	chr5	+	2377	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	0	0	0	0	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	6417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	342	False	NA	21	True	AATATA	-23	NA	129097132	129101387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
transcript_10679.nic	chr10	-	572	4	ISM	ENSMUSG00000000374.9	ENSMUST00000000384.8	5047	23	-21	36009	-21	-5547	5prime_fragment	FALSE	canonical	3	12	junction_1	2.05480466765633	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACATCCTTCCCCGAACT	NA	False	NA	NA	False	AAGAAA	-11	NA	78080496	78058567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_78058695_78064612_78064749_78067287_78067370_78080269
transcript_106795.known	chr5	+	2423	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	0	0	0	0	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	545	False	NA	21	True	AATATA	-23	NA	129097335	129101387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
transcript_106796.known	chr5	+	5163	26	FSM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.7999712230067	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGAGCGTCACA	NA	False	NA	29	True	AATAAA	-17	NA	129173813	129281663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129174291_129174372_129174410_129186641_129186726_129189291_129189388_129192118_129192242_129199474_129199655_129205917_129206173_129208640_129208697_129209775_129209932_129213998_129214059_129216651_129216770_129217797_129217909_129219523_129219600_129221030_129221173_129239658_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
transcript_106798.nnic	chr5	+	3076	11	NIC	ENSMUSG00000044017.17	novel	5163	26	NA	NA	65830	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	16.6180624622728	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGAGCGTCACA	4614	False	NA	29	True	AATAAA	-17	NA	129239650	129281663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_129239733_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
transcript_106799.nnic	chr5	+	2700	8	NIC	ENSMUSG00000044017.17	novel	5163	26	NA	NA	65836	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	20.8287477946678	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGAGCGTCACA	4620	False	NA	29	True	AATAAA	-17	NA	129239656	129281663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_129239733_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
transcript_106801.known	chr5	-	441	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCATCTCAAGGATCGGGG	NA	False	NA	NA	False	NA	NA	NA	129205581	129205140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_129205100_129205600
transcript_106802.known	chr5	-	938	1	FSM	ENSMUSG00000104873.2	ENSMUST00000199847.2	938	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAACGGT	NA	False	NA	NA	False	NA	NA	NA	129578065	129577127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_129577100_129578100
transcript_106805.nic	chr5	+	3381	19	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	24.9767793394753	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGGGCTCTCCTTC	NA	False	NA	13	True	AATAAA	-26	NA	129578282	129648445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620360_129626517_129626749_129627760_129627952_129631506_129631773_129636532_129636686_129637743_129637870_129646704_129646879_129647539_129647613_129648065
transcript_106807.nic	chr5	+	3465	19	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_15	22.5492602052145	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGGGCTCTCCTTC	NA	False	NA	13	True	AATAAA	-26	NA	129578282	129648445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129636532_129636686_129637743_129637870_129646704_129646879_129647539_129647613_129648065
transcript_106813.nic	chr5	+	3228	18	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	23.627296395231	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGGGCTCTCCTTC	NA	False	NA	13	True	AATAAA	-26	NA	129578282	129648445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620360_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
transcript_106814.known	chr5	+	3313	18	FSM	ENSMUSG00000029439.15	ENSMUST00000053737.9	3313	18	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_11	20.649823847033	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGGGCTCTCCTTCTTC	NA	False	NA	16	True	AATAAA	-29	NA	129578284	129648448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
transcript_106819.nic	chr5	+	2356	14	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	-2	3727	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	16.5833023598969	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTCTCGGACAAGGTCCCG	NA	False	NA	NA	False	NA	NA	NA	129578282	129631653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620360_129626517_129626749_129627760_129627952_129631506
transcript_10682.nnic	chr10	-	3591	11	NNC	ENSMUSG00000001211.16	novel	3681	11	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_10	150.89599066907	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAATGCTTTTTCTCTT	NA	False	NA	-13	True	AATAAA	-5	NA	78188007	78107396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460_78187546_78187866
transcript_106826.known	chr5	+	3398	1	FSM	ENSMUSG00000029439.15	ENSMUST00000199887.2	3398	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAAAATATTTGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	129578309	129581707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129578300_129581700
transcript_10683.nic	chr10	-	3723	11	NIC	ENSMUSG00000001211.16	novel	3513	11	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	187	junction_10	110.528910245239	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAATGCTTTTTCTCTT	NA	False	NA	-13	True	AATAAA	-5	NA	78188319	78107396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460_78187546_78188046
transcript_106831.known	chr5	+	6422	10	FSM	ENSMUSG00000029436.10	ENSMUST00000031390.10	6422	10	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_6	22.9879195327556	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGACAGTCCTCCTCAA	NA	False	NA	NA	False	AATAAA	-21	NA	129661232	129688163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129661513_129671607_129671741_129672017_129672148_129672468_129672753_129673625_129673803_129675722_129675823_129678996_129679080_129679165_129679319_129682578_129682837_129683339
transcript_106833.nnic	chr5	+	3419	10	NNC	ENSMUSG00000029436.10	novel	6422	10	NA	NA	-26	-2892	at_least_one_novel_splicesite	TRUE	canonical	3	19	junction_8	58.5586126125877	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACAGGTTGACAGCTCAG	NA	False	NA	7	True	AATAAA	-13	NA	129661206	129685271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_129661513_129671607_129671741_129672017_129672148_129672468_129672753_129673625_129673803_129675722_129675823_129678996_129679080_129679165_129679319_129682715_129682837_129683339
transcript_10684.known	chr10	-	3513	11	FSM	ENSMUSG00000001211.16	ENSMUST00000105390.8	3513	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	153.669417907403	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAATGCTTTTTCTCTT	NA	False	NA	-13	True	AATAAA	-5	NA	78187699	78107396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460_78187546_78187636
transcript_106841.known	chr5	-	3929	3	FSM	ENSMUSG00000051034.8	ENSMUST00000049778.7	3929	3	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_2	2	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATTGAAACAGCCTCATG	NA	False	NA	NA	False	AATAAA	-22	NA	129747163	129731656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_129735450_129737833_129737930_129747123
transcript_106845.known	chr5	+	832	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	760	False	NA	23	True	CATAAA	-12	NA	129792566	129795544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
transcript_106850.known	chr5	+	843	4	FSM	ENSMUSG00000034211.15	ENSMUST00000118420.8	843	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	354.785381134379	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCCCCCAAAGAAATCTT	761	False	NA	-60	True	NA	NA	NA	129792567	129795461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129792614_129792747_129792923_129793790_129793931_129794979
transcript_106852.known	chr5	+	514	4	FSM	ENSMUSG00000034211.15	ENSMUST00000154358.6	514	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	362.116924026849	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAAGCACGAACTGGCTG	766	False	NA	NA	False	NA	NA	NA	129792572	129795083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129792614_129792747_129792977_129793790_129793931_129794979
transcript_106854.known	chr5	+	1208	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119604.8	1208	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	359.259732722101	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGGCCTGTTTTGTTGT	773	False	NA	NA	False	NA	NA	NA	129792579	129795755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129792614_129792747_129793006_129793790_129793931_129794979
transcript_106859.nnic	chr5	+	1705	4	NNC	ENSMUSG00000034211.15	novel	832	4	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	356.816790835608	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	735	False	NA	23	True	CATAAA	-12	NA	129792541	129795544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_129792614_129792747_129793676_129793790_129793931_129794979
transcript_10686.nic	chr10	-	1675	11	NIC	ENSMUSG00000001211.16	novel	3513	11	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	187	junction_10	110.528910245239	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGAAAGAGACACTTAGAG	NA	False	NA	-18	True	ATTAAA	-20	NA	78188319	78109444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460_78187546_78188046
transcript_106862.known	chr5	+	2182	3	FSM	ENSMUSG00000034211.15	ENSMUST00000121339.2	2182	3	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	221	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCACCAACTTGCAAGGA	768	False	NA	NA	False	NA	NA	NA	129792574	129795939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129792614_129792747_129793931_129794979
transcript_106864.nnic	chr5	+	568	3	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	55	junction_1	423.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	754	False	NA	39	True	AGTAAA	-34	NA	129792560	129795354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_129792614_129793790_129793931_129794979
transcript_106865.nnic	chr5	+	758	3	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	55	junction_1	423.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	754	False	NA	23	True	CATAAA	-12	NA	129792560	129795544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_129792614_129793790_129793931_129794979
transcript_106866.known	chr5	+	2112	10	FSM	ENSMUSG00000029432.13	ENSMUST00000086046.10	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_9	37.917389085507	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGCACGATTGAGACC	7767	False	NA	18	True	AATAAA	-17	NA	129802126	129835391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
transcript_106868.nic	chr5	+	1285	7	ISM	ENSMUSG00000029432.13	ENSMUST00000124342.8	1600	11	-44	9624	-8	-6237	5prime_fragment	FALSE	canonical	3	307	junction_6	32.8515178069784	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTTGAGTTTACACTTC	7759	False	NA	NA	False	NA	NA	NA	129802118	129825690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065
transcript_106869.known	chr5	+	2588	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	0	0	0	0	multi-exon	TRUE	canonical	3	3618	junction_3	465.957308149311	3277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACTTGAAATGACTGAAA	NA	False	NA	38	True	AATAAA	-30	NA	129864061	129875212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
transcript_10689.known	chr10	-	5980	10	FSM	ENSMUSG00000001211.16	ENSMUST00000001240.12	5980	10	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_9	65.0870262621847	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACTCTCTGCCTCTTTTT	NA	False	NA	-3	True	CATAAA	-22	NA	78188276	78105011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78188046
transcript_10692.known	chr10	-	3439	10	FSM	ENSMUSG00000001211.16	ENSMUST00000166360.8	3439	10	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_9	86.9833246400257	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAATGCTTTTTCTCTT	NA	False	NA	-13	True	AATAAA	-5	NA	78187534	78107396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460
transcript_106922.known	chr5	-	1733	8	FSM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_7	460.03695503731	1569	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGTAGTTTTAAGTGA	8757	False	NA	-2	True	ATTAAA	-22	NA	129864513	129842621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085_129856313_129856425_129856509_129864018
transcript_106923.nic	chr5	+	847	7	ISM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	356	6330	356	-238	5prime_fragment	FALSE	canonical	3	3618	junction_3	237.298276905295	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAGAGAAAAACTAGTAAA	NA	False	NA	15	True	AATAGA	-37	NA	129864417	129868882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845
transcript_10693.known	chr10	-	1984	13	FSM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	71.0948115000119	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGCTTCTCCCATTT	NA	False	NA	-19	True	AATAAA	-19	NA	78248877	78236219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
transcript_106933.known	chr5	+	1656	10	FSM	ENSMUSG00000025538.16	ENSMUST00000137357.5	1656	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	198.480213275098	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	16	True	AATAAA	-16	NA	129875860	129892273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883304_129883349_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
transcript_106940.known	chr5	+	2264	9	FSM	ENSMUSG00000025538.16	ENSMUST00000171300.8	2264	9	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_6	14.1371629049113	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCTGCCTATCACGGT	NA	False	NA	NA	False	AATACA	-17	NA	129875826	129892891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
transcript_10696.known	chr10	+	603	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	0	0	0	0	multi-exon	TRUE	canonical	3	3631	junction_2	117.5	740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGTGTCCTTAGTTTT	NA	False	NA	23	True	AATATA	-18	NA	78261502	78263456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_78261692_78262760_78262863_78263144
transcript_106962.known	chr5	+	730	5	FSM	ENSMUSG00000034173.14	ENSMUST00000077320.3	730	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1960.39592620981	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAAACTGAAACGCCATT	6060	False	NA	NA	False	NA	NA	NA	129924618	129930666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129924694_129927843_129927935_129928023_129928274_129929185_129929337_129930503
transcript_106964.known	chr5	+	2492	4	FSM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	2120.04764097414	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGTCTCAAAAAAAATTT	6005	False	NA	NA	False	AATAAA	-17	NA	129924563	129932464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129924694_129928023_129928274_129929185_129929337_129930503
transcript_106968.known	chr5	-	915	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	0	0	0	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	2555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2064	False	NA	-3	True	AATAAA	-18	NA	129916311	129909996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
transcript_106969.known	chr5	-	2069	3	FSM	ENSMUSG00000070493.4	ENSMUST00000131645.2	2069	3	0	0	0	0	multi-exon	FALSE	canonical	3	5311	junction_2	528	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	2261	False	NA	-6	True	AATAAA	-15	NA	129916114	129909999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_129910238_129911269_129913025_129916038
transcript_106970.known	chr5	+	628	3	FSM	ENSMUSG00000095789.7	ENSMUST00000195766.6	628	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAACTCTTCTGGCTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	129937380	129940122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129937763_129939738_129939788_129939925
transcript_106973.known	chr5	+	650	3	FSM	ENSMUSG00000066735.9	ENSMUST00000073945.6	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	420.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCGAGCCAATCAAAGACA	NA	False	NA	NA	False	AAAAAG	-5	NA	129970967	130011420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129971069_130007359_130007470_130010981
transcript_106976.known	chr5	+	3112	3	FSM	ENSMUSG00000066735.9	ENSMUST00000051758.11	3112	3	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_1	60.5	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTGTTTTATTTGG	NA	False	NA	44	True	AATATA	-17	NA	129970810	130013587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129971207_130007359_130007470_130010981
transcript_106982.known	chr5	+	4809	2	FSM	ENSMUSG00000066735.9	ENSMUST00000201855.2	4809	2	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTGCTGCCATCGTTCT	NA	False	NA	13	True	AATAAA	-20	NA	129970949	130015533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_129971207_130010981
transcript_106984.known	chr5	-	2687	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	0	0	0	0	multi-exon	TRUE	canonical	3	83	junction_6	16.6092675514317	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130031890	130017851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
transcript_106987.known	chr5	-	2272	11	FSM	ENSMUSG00000025534.18	ENSMUST00000201801.4	2272	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	32.1249124512426	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAAACTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	130031669	130017863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029597_130029784_130031447
transcript_106990.known	chr5	-	932	3	FSM	ENSMUSG00000025534.18	ENSMUST00000111307.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	55.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTCGCTATTGTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	130031722	130028439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_130028911_130029597_130029784_130031447
transcript_106991.known	chr5	-	2038	4	FSM	ENSMUSG00000025534.18	ENSMUST00000111308.8	2038	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	11.5854314646552	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130031706	130027499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_130028911_130029201_130029384_130029597_130029784_130031447
transcript_106996.nic	chr5	-	1631	17	NIC	ENSMUSG00000025533.16	novel	2413	16	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	1	7	junction_16	77.2141654345237	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGCATATGCTTCTGC	NA	False	NA	-10	True	AATAAA	-21	NA	130053189	130040344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053048
transcript_106997.known	chr5	-	1824	17	FSM	ENSMUSG00000025533.16	ENSMUST00000161094.8	1824	17	0	0	0	0	multi-exon	FALSE	canonical	1	102	junction_3	46.3975686324187	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGAGAGATGTGTCAGT	NA	False	NA	NA	False	CATAAA	-21	NA	130053222	130040098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053134
transcript_10700.known	chr10	-	5124	11	FSM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	0	0	0	0	multi-exon	TRUE	canonical	3	285	junction_4	40.3910881259715	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTAGTGTGGTCATTTCT	6802	False	NA	-2	True	AATAAA	-17	NA	78300809	78272577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
transcript_107008.known	chr5	+	1492	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	51.2382669496149	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCCACCATACCTGG	NA	False	NA	5	True	AAAACA	-1	NA	130058130	130089630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
transcript_107010.known	chr5	+	669	6	FSM	ENSMUSG00000025532.14	ENSMUST00000156729.2	669	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	131.765549367048	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACCCCCTCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	130058183	130088773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_130058336_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
transcript_107011.known	chr5	+	931	5	FSM	ENSMUSG00000025532.14	ENSMUST00000202163.4	931	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	138.212472302611	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTAATGTGCATGCATG	NA	False	NA	NA	False	NA	NA	NA	130058142	130089176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130077766_130077825_130088545
transcript_107016.known	chr5	+	2050	6	FSM	ENSMUSG00000034118.16	ENSMUST00000040721.9	2050	6	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	10.899541274751	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAATGGTCCCGTTTTCAG	NA	False	NA	17	True	AATAAA	-18	NA	130108210	130164570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_130108503_130130430_130131377_130143308_130143508_130158348_130158400_130163299_130163340_130164048
transcript_107020.known	chr5	+	4291	4	FSM	ENSMUSG00000034110.9	ENSMUST00000040616.9	4291	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	1.88561808316413	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCCTCAAGAGGCAGAG	1855	False	NA	NA	False	NA	NA	NA	130173701	130184647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_130174068_130176894_130177065_130180511_130180691_130181071
transcript_107024.nic	chr5	+	2702	9	NIC	ENSMUSG00000025340.15	novel	2690	9	NA	NA	-14	0	intron_retention	FALSE	canonical	3	67	junction_3	37.9637985454564	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATTGGTTTTGTTTTGT	NA	False	NA	16	True	AATAAA	-38	NA	130200624	130243178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_130200736_130216241_130216428_130219717_130219885_130226787_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
transcript_107025.known	chr5	+	2690	9	FSM	ENSMUSG00000025340.15	ENSMUST00000119797.8	2690	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	33.6962535009458	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTTTGTTTTGTTTCTG	NA	False	NA	21	True	AATAAA	-43	NA	130200638	130243183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_130200736_130216241_130216428_130219717_130219885_130226790_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
transcript_10704.nic	chr10	+	2355	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.9345521815444	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5276	False	NA	30	True	AATAAA	-39	NA	78410210	78420336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_78410403_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_107043.known	chr5	+	3570	7	FSM	ENSMUSG00000053094.16	ENSMUST00000111298.6	3570	7	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_4	20.4042479237372	690	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTGCCGTTTTAATTC	9017	False	NA	14	True	AATAAA	-15	NA	130251175	130272507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_130251414_130258289_130258468_130260595_130260882_130265643_130265795_130267087_130267272_130269188_130269333_130270118
transcript_107057.nic	chr5	-	1491	5	NIC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-2	0	intron_retention	FALSE	canonical	3	21	junction_4	356.535411985962	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284373	130274571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282851_130284050
transcript_107059.known	chr5	-	815	5	FSM	ENSMUSG00000025337.11	ENSMUST00000139211.5	815	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	362.983728974179	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAAAGGCAGGGGTTCTCT	NA	False	NA	NA	False	AATAAA	-8	NA	130284246	130275245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130283984
transcript_10706.known	chr10	+	2329	16	FSM	ENSMUSG00000032763.12	ENSMUST00000105384.5	2329	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	41.9345521815444	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5399	False	NA	30	True	AATAAA	-39	NA	78410333	78420336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_78410500_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_107060.known	chr5	-	1548	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284371	130274571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
transcript_107076.nic	chr5	+	2544	16	NIC	ENSMUSG00000056310.15	novel	4698	9	NA	NA	-38	-406	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	68.4530658350831	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	3474	False	NA	20	True	AATAAA	-23	NA	130284421	130369998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
transcript_107077.known	chr5	+	3044	16	FSM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_10	31.6406208676266	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGACATGTTCCCATGCTT	4928	False	NA	NA	False	AATAAA	-17	NA	130285875	130370404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
transcript_10708.nic	chr10	+	2560	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	39.9503024602651	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5337	False	NA	30	True	AATAAA	-39	NA	78410271	78420336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_107088.known	chr5	+	1867	8	FSM	ENSMUSG00000056310.15	ENSMUST00000100662.10	1867	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	111.662392039211	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTACTGACTTAGGCTG	4928	False	NA	NA	False	TTTAAA	-5	NA	130285875	130306590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130305829
transcript_107092.known	chr5	-	4217	14	FSM	ENSMUSG00000029673.20	ENSMUST00000161374.8	4217	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_11	11.7397821618248	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAGACACTCTGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	131567526	131468135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131501096_131501318_131503760_131504012_131505390_131505863_131562659_131562712_131566498
transcript_107094.known	chr5	-	3695	1	FSM	ENSMUSG00000029673.20	ENSMUST00000198165.2	3695	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAACAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	131566844	131563149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_131563100_131566800
transcript_107095.known	chr5	+	414	1	FSM	ENSMUSG00000058905.6	ENSMUST00000145209.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	447	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACGCCCGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	133503961	133504375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_133504000_133504400
transcript_107096.known	chr5	+	7367	9	FSM	ENSMUSG00000015944.10	ENSMUST00000016088.9	7367	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	2.20439901106855	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGTCTGATTCTATGTT	NA	False	NA	NA	False	ATTAAA	-28	NA	134128549	134173182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_134128991_134154710_134154782_134163989_134164184_134164418_134164552_134164943_134165068_134165888_134166000_134166302_134166386_134166874_134166970_134167067
transcript_10710.nic	chr10	+	2196	16	NIC	ENSMUSG00000032763.12	novel	2233	15	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	44.6186806916864	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5862	False	NA	30	True	AATAAA	-39	NA	78410796	78420336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_78410830_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_107103.known	chr5	-	2321	11	FSM	ENSMUSG00000061979.9	ENSMUST00000076228.3	2321	11	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	26.6850145212627	1015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACTTGATCATTTCTT	NA	False	NA	4	True	AATAAA	-42	NA	134205613	134176892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
transcript_107111.nnic	chr5	-	2177	10	NIC	ENSMUSG00000061979.9	novel	2321	11	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	114.615083143322	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACTTGATCATTTCTT	NA	False	NA	4	True	AATAAA	-42	NA	134205643	134176892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_134177846_134182962_134183049_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
transcript_107118.known	chr5	+	599	1	FSM	ENSMUSG00000104195.2	ENSMUST00000192229.2	599	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATGTCTGTGAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	134205196	134205795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_134205200_134205800
transcript_107119.known	chr5	+	3482	16	FSM	ENSMUSG00000015942.10	ENSMUST00000016086.10	3482	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_8	3.05505046330389	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTTTGTGTGTGTG	NA	False	NA	10	True	AATAAA	-17	NA	134212865	134246988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_134213098_134220018_134220117_134221491_134221631_134223699_134223817_134225262_134225447_134226088_134226118_134230244_134230300_134231079_134231124_134232111_134232190_134235611_134235669_134237720_134237784_134240038_134240117_134241893_134241978_134242808_134242993_134243482_134243512_134244977
transcript_10712.known	chr10	+	2233	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCAAGGACTCAGTCACA	5893	False	NA	7	True	AATAAA	-16	NA	78410827	78420313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_107124.known	chr5	-	4381	34	FSM	ENSMUSG00000060261.17	ENSMUST00000111261.12	4381	34	0	0	0	0	multi-exon	TRUE	canonical	3	228	junction_23	69.7198249746108	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCATTCTTTTCCTGCT	635	False	NA	-6	True	AATAAA	-28	NA	134343600	134266690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134301377_134301441_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
transcript_107125.nic	chr5	-	4412	34	NIC	ENSMUSG00000060261.17	novel	4381	34	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	192	junction_8	75.7046966966276	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAACTCATTCTTTTC	611	False	NA	-11	True	AATAAA	-23	NA	134343624	134266695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134301377_134301441_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
transcript_107130.nic	chr5	-	4337	33	NIC	ENSMUSG00000060261.17	novel	4375	34	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	196	junction_23	67.772417589588	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAACTCATTCTTTTC	611	False	NA	-11	True	AATAAA	-23	NA	134343624	134266695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
transcript_107131.known	chr5	-	4302	33	FSM	ENSMUSG00000060261.17	ENSMUST00000173341.9	4302	33	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_8	74.2225788486058	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACTCATTCTTTTCCTG	661	False	NA	-8	True	AATAAA	-26	NA	134343574	134266692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
transcript_107141.known	chr5	-	4114	31	FSM	ENSMUSG00000060261.17	ENSMUST00000172715.8	4114	31	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_23	92.6270238945177	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAACTCATTCTTTTC	699	False	NA	-11	True	AATAAA	-23	NA	134343536	134266695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
transcript_107147.nic	chr5	-	3852	31	NIC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	-268	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_9	59.5236274282929	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCACTTTTTTTTCCCCT	NA	False	NA	NA	False	AGTAAA	-21	NA	134485838	134386509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395750_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_107151.nic	chr5	-	3604	31	NIC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_30	59.8322562577151	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCACTTTTTTTTCCCCT	NA	False	NA	NA	False	AGTAAA	-21	NA	134485172	134386509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
transcript_107152.known	chr5	-	3572	31	FSM	ENSMUSG00000023079.15	ENSMUST00000073161.12	3572	31	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	54.133743840808	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGCGTCACTTTTTTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	134485542	134386514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_107163.known	chr5	-	3461	30	FSM	ENSMUSG00000023079.15	ENSMUST00000111244.5	3461	30	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_29	53.0244374146404	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCACTTTTTTTTCCCCT	NA	False	NA	NA	False	AGTAAA	-21	NA	134485110	134386509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
transcript_107164.known	chr5	-	3524	30	FSM	ENSMUSG00000023079.15	ENSMUST00000171794.9	3524	30	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_8	45.8592169193566	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCACTTTTTTTTCCCCT	NA	False	NA	NA	False	AGTAAA	-21	NA	134485570	134386509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_107174.known	chr5	-	3693	30	FSM	ENSMUSG00000023079.15	ENSMUST00000100652.10	3693	30	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_8	54.3409328203516	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAACACAAACACAAAAC	NA	False	NA	NA	False	NA	NA	NA	134485546	134387488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_107177.known	chr5	-	3299	29	FSM	ENSMUSG00000023079.15	ENSMUST00000111245.9	3299	29	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	59.2579431513667	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCCTTTTTAAATAAGTAA	NA	False	NA	NA	False	NA	NA	NA	134485443	134386550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_107179.known	chr5	-	3487	29	FSM	ENSMUSG00000023079.15	ENSMUST00000100650.10	3487	29	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_7	45.9988353889841	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	134485440	134387507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_10719.known	chr10	+	2331	14	FSM	ENSMUSG00000032763.12	ENSMUST00000218215.2	2331	14	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	17.1491887433841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCACAGAATCTGTGTATA	5894	False	NA	20	True	AATAAA	-29	NA	78410828	78420326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711
transcript_107190.known	chr5	-	3514	28	FSM	ENSMUSG00000023079.15	ENSMUST00000202554.4	3514	28	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	59.6628386936764	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGGGAAGATCGGCGTT	NA	False	NA	NA	False	NA	NA	NA	134485443	134387426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_1072.nic	chr1	-	2455	9	NIC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	-28	-1088	intron_retention	FALSE	canonical	3	484	junction_1	34.797404716444	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCGGTGTGTGGCTCTGA	NA	False	NA	-19	True	TATAAA	-26	NA	36749056	36738282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
transcript_107202.known	chr5	-	4893	16	FSM	ENSMUSG00000063146.12	ENSMUST00000036999.10	4893	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.93907194296653	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCTGCTGCCTGCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	134581288	134518236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134519647_134520746_134520810_134521072_134521259_134523062_134523223_134525082_134525240_134526943_134527028_134528945_134529004_134531379_134532316_134539016_134539078_134542849_134542954_134544934_134545133_134545669_134545884_134546760_134546886_134551439_134551997_134563900_134564092_134580899
transcript_107205.known	chr5	+	4995	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATGATTTGTCTTCCTG	NA	False	NA	NA	False	ATTAAA	-22	NA	134611543	134630659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
transcript_107216.known	chr5	+	967	6	FSM	ENSMUSG00000023104.10	ENSMUST00000201674.2	967	6	0	0	0	0	multi-exon	FALSE	canonical	3	1227	junction_5	81.2147769805471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGCGTGTGTAAAGGTCA	NA	False	NA	NA	False	NA	NA	NA	134611610	134620488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972
transcript_107222.known	chr5	-	2726	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	1151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACCTCTAAAGAAGAAAC	9878	False	NA	NA	False	NA	NA	NA	134668344	134648574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
transcript_107230.known	chr5	-	2367	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	0	0	0	0	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	2265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATGCTTGTCTTTCTGG	10021	False	NA	-4	True	AATAAA	-18	NA	134668201	134648730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
transcript_107237.known	chr5	-	896	4	FSM	ENSMUSG00000040731.14	ENSMUST00000200874.2	896	4	0	0	0	0	multi-exon	FALSE	canonical	3	2106	junction_3	61.0482504981829	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCGTCCTAGATAGGGGT	2225	False	NA	NA	False	NA	NA	NA	134668156	134653735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134654317_134654394_134654460_134656441_134656630_134668094
transcript_107245.known	chr5	-	3331	16	FSM	ENSMUSG00000029674.14	ENSMUST00000015137.10	3331	16	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_14	3.46794848097065	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCGTGTGTGTGTCTGAG	5766	False	NA	0	True	AATAAA	-33	NA	134717452	134684892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134686240_134686346_134686505_134686762_134686819_134688700_134688858_134690646_134690713_134690956_134691017_134693038_134693171_134694060_134694148_134694683_134694868_134697767_134697935_134698043_134698150_134699171_134699379_134701524_134701635_134701865_134702005_134715497_134715595_134717194
transcript_107251.nic	chr5	+	1215	7	NIC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	36.2583323756991	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACCAGTGTGTACTGTAA	3402	False	NA	4	True	NA	NA	NA	134961211	134970086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
transcript_107254.known	chr5	+	1387	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111218.8	1387	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	38.4988311510882	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGAAAAAAAATAAAAATA	3436	False	NA	16	True	NA	NA	NA	134961245	134970056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_134961303_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_107256.known	chr5	+	1790	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111219.8	1790	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	38.8947297201048	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAATAGAAAGTAAAGAGA	3417	False	NA	NA	False	NA	NA	NA	134961226	134970577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_134961265_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_107258.known	chr5	+	2808	6	FSM	ENSMUSG00000040557.15	ENSMUST00000047196.14	2808	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	28.2460616723819	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTTTTTACATTTATAT	3412	False	NA	NA	False	AATAAA	-23	NA	134961221	134971491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_107260.known	chr5	+	721	6	FSM	ENSMUSG00000040557.15	ENSMUST00000201847.3	721	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	40.4791304254427	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGATGGCTTCATCTCTG	3568	False	NA	NA	False	NA	NA	NA	134961377	134969488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_134961436_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_107268.known	chr5	-	1816	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	994	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTGTTCTCTATCTGTG	NA	False	NA	-9	True	AATAAA	-25	NA	134975788	134973972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_134974000_134975800
transcript_107269.known	chr5	+	1259	1	FSM	ENSMUSG00000070473.5	ENSMUST00000094245.4	1259	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCTGGAGCTTCCTTAT	5041	False	NA	38	True	AATAAA	-18	NA	135015067	135016326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135015100_135016300
transcript_107270.known	chr5	+	972	6	FSM	ENSMUSG00000040532.15	ENSMUST00000111216.8	972	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	236.865024855929	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAACACTTTTAATGAAT	NA	False	NA	-29	True	NA	NA	NA	135038005	135040985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135038070_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
transcript_107272.known	chr5	-	363	3	FSM	ENSMUSG00000085042.9	ENSMUST00000222613.2	363	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	6.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGGATCCAGGGCTTAAA	NA	False	NA	-72	True	NA	NA	NA	135041642	135041039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135041187_135041283_135041405_135041547
transcript_107275.known	chr5	+	1493	6	FSM	ENSMUSG00000040532.15	ENSMUST00000046999.12	1493	6	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	65.8634952003004	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGTTTTCACCACCGT	NA	False	NA	15	True	AATAAA	-22	NA	135038152	135041029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
transcript_107276.known	chr5	+	1473	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	0	0	0	0	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038309	135041024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
transcript_107277.known	chr5	+	1475	3	FSM	ENSMUSG00000040532.15	ENSMUST00000149778.2	1475	3	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_1	28.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038559	135041024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135038972_135039740_135040520_135040740
transcript_107278.known	chr5	+	1466	4	FSM	ENSMUSG00000040532.15	ENSMUST00000123227.3	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	61.059169845505	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038544	135041024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135038694_135038835_135038972_135039740_135040235_135040337
transcript_107281.known	chr5	+	2167	10	FSM	ENSMUSG00000007207.11	ENSMUST00000150838.2	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	7.53428378140653	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTCTGTTTGGAACA	NA	False	NA	15	True	AATAAA	-15	NA	135052413	135079954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135052465_135065979_135066058_135066329_135066430_135070090_135070166_135070784_135070859_135070962_135071072_135071446_135071521_135074450_135074589_135077764_135077959_135078680
transcript_107282.known	chr5	+	2162	10	FSM	ENSMUSG00000007207.11	ENSMUST00000005509.11	2162	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	6.36153564813317	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTCTGTTTGGAACA	NA	False	NA	15	True	AATAAA	-15	NA	135052335	135079954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135052465_135065979_135066058_135066329_135066430_135070090_135070166_135070784_135070859_135070962_135071072_135071446_135071521_135074450_135074589_135077847_135077959_135078680
transcript_107283.known	chr5	-	1516	13	FSM	ENSMUSG00000005378.18	ENSMUST00000085984.11	1516	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	290.243898873574	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	False	NA	-1	True	ATTAAA	-16	NA	135093520	135081810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867_135093030_135093377
transcript_107287.known	chr5	-	1169	10	FSM	ENSMUSG00000005378.18	ENSMUST00000111205.8	1169	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	333.393994480338	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGTGTCCCTGGCCCTG	NA	False	NA	-3	True	ATTAAA	-14	NA	135092932	135081812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135082279_135082402_135082493_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867
transcript_107288.known	chr5	-	1544	4	FSM	ENSMUSG00000043614.14	ENSMUST00000067935.11	1544	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	2.86744175568088	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCCCCGCCTCCTCTCT	NA	False	NA	-2	True	NA	NA	NA	135107120	135101753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135102838_135103247_135103331_135105311_135105484_135106915
transcript_107289.known	chr5	-	1286	2	FSM	ENSMUSG00000043614.14	ENSMUST00000076203.3	1286	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGATGCCCCGCCTCCTC	NA	False	NA	-5	True	NA	NA	NA	135107120	135101756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135102838_135106915
transcript_107290.known	chr5	+	3622	17	FSM	ENSMUSG00000005373.14	ENSMUST00000005507.10	3622	17	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_13	3.60067268020852	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGAGGCAGGTTTTTAA	3434	False	NA	NA	False	NA	NA	NA	135135771	135167236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589_135150680_135150923_135150969_135152503_135152706_135152790_135152872_135157366_135157552_135161168_135161716_135161962_135162031_135162105_135162263_135162397_135162514_135162607_135162728_135162847_135162976_135163340_135163465_135164204_135164335_135166095
transcript_107296.known	chr5	+	3195	17	FSM	ENSMUSG00000005373.14	ENSMUST00000129008.5	3195	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	6.16314651781053	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGGGTTGGTGTTGGTG	3429	False	NA	1	True	AATAAA	-14	NA	135135766	135166776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589_135150680_135150923_135150969_135152503_135152706_135152790_135152872_135157366_135157552_135161168_135161716_135161934_135162031_135162105_135162263_135162397_135162514_135162607_135162728_135162847_135162976_135163340_135163465_135164204_135164335_135166095
transcript_107304.known	chr5	+	7488	7	FSM	ENSMUSG00000005374.14	ENSMUST00000153183.8	7488	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	17.4610678049451	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGAGCCGTCAAATCAT	9490	False	NA	NA	False	AATAAA	-10	NA	135178510	135194614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135178719_135181788_135181911_135183167_135183353_135185221_135185374_135186385_135186513_135187457_135187611_135188073
transcript_107309.known	chr5	+	1368	6	FSM	ENSMUSG00000005374.14	ENSMUST00000005508.14	1368	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	93.5037967143581	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATATCTCTCTCTCTGT	9519	False	NA	NA	False	NA	NA	NA	135178539	135188675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135178719_135181788_135181911_135183167_135183353_135186385_135186513_135187457_135187611_135188073
transcript_107311.known	chr5	+	1758	6	FSM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_5	29.6445610525776	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACAGCTTCTTTCTACA	8669	False	NA	29	True	ATTAAA	-24	NA	135197136	135210709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
transcript_107317.known	chr5	+	1434	5	FSM	ENSMUSG00000029681.13	ENSMUST00000111188.5	1434	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	127.801604058791	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGAAATATGTCTTGTT	8798	False	NA	5	True	AATAGA	-17	NA	135197265	135210685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135209369_135209450_135209691
transcript_107318.known	chr5	+	564	3	FSM	ENSMUSG00000029681.13	ENSMUST00000111187.10	564	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	118	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAAGTGTCTATTTTTG	8775	False	NA	NA	False	AAAACA	-3	NA	135197242	135202302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135197453_135199940_135200017_135202024
transcript_107321.known	chr5	+	6492	19	FSM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_5	50.9896201008077	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGCTTTGATGTTTCC	NA	False	NA	41	True	AATAAA	-44	NA	135216117	135274983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135216611_135225325_135225443_135227024_135227170_135233843_135234046_135237896_135238019_135239594_135239793_135245443_135247149_135250811_135250951_135251938_135252073_135255363_135255467_135257380_135257480_135259010_135259189_135260453_135260637_135265128_135265277_135266772_135266921_135268880_135269000_135271265_135271397_135272662_135272767_135272959
transcript_107322.known	chr5	-	2293	1	FSM	ENSMUSG00000049551.3	ENSMUST00000062572.3	2293	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	202	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGTGTTCTATCTGGG	NA	False	NA	-2	True	AATAAA	-13	NA	135280084	135277791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135277800_135280100
transcript_107327.known	chr5	-	1235	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201784.4	1235	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	331.894438590566	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378729	135366219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378672
transcript_107328.known	chr5	-	1447	9	FSM	ENSMUSG00000040013.12	ENSMUST00000044972.11	1447	9	0	0	0	0	multi-exon	FALSE	canonical	3	793	junction_1	94.8445273856114	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378898	135320557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
transcript_107329.known	chr5	-	1297	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	339.384075967639	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378868	135320557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
transcript_107330.known	chr5	-	1287	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201534.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_1	63.5022095067951	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378897	135366219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
transcript_107331.nnic	chr5	+	2005	7	NNC	ENSMUSG00000053388.11	novel	1803	6	NA	NA	-1419	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	2.86744175568088	53	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGCTTCCCAACTTG	NA	False	NA	NA	False	AATAAA	-4	NA	135380729	135396859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_135380916_135382136_135382549_135387708_135387805_135392581_135392813_135392903_135392927_135395394_135395520_135395927
transcript_107334.known	chr5	-	5580	13	FSM	ENSMUSG00000053293.10	ENSMUST00000111171.6	5580	13	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	20.4224481610038	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGAGTTTGCCCTTTATT	NA	False	NA	-5	True	AATAAA	-18	NA	135423400	135404994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135407029_135407488_135407612_135409773_135411391_135411924_135412099_135412480_135412584_135412692_135412818_135412946_135413021_135413706_135413799_135415677_135415850_135417490_135417572_135420475_135420635_135421163_135421380_135422790
transcript_107340.nnic	chr5	+	1734	11	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	113.163421652051	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135398783	135404997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402104_135402228_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
transcript_107344.known	chr5	+	2243	10	FSM	ENSMUSG00000000916.16	ENSMUST00000000940.15	2243	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_9	22.1966519552993	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAATGTTTAAATATTT	NA	False	NA	NA	False	AATAAA	-12	NA	135398806	135405652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
transcript_10737.known	chr10	+	3020	12	FSM	ENSMUSG00000032763.12	ENSMUST00000218875.2	3020	12	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	17.4725286148956	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5486	False	NA	30	True	AATAAA	-39	NA	78410420	78420336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297
transcript_107391.nnic	chr5	-	5348	32	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-187	-2378	at_least_one_novel_splicesite	FALSE	canonical	2	120	junction_16	38.9079599109602	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAACAGGTTATATATGT	9423	False	NA	-28	True	NA	NA	NA	135518299	135437766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107393.nic	chr5	-	5513	32	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-376	-2378	combination_of_known_junctions	FALSE	canonical	2	76	junction_16	43.795262003845	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAACAGGTTATATATGT	9234	False	NA	-28	True	NA	NA	NA	135518488	135437766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107395.nnic	chr5	-	5077	32	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-177	-2639	at_least_one_novel_splicesite	FALSE	canonical	2	120	junction_16	38.9079599109602	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCACTATCATTTTTAAAAA	9433	False	NA	-3	True	AATAAA	-20	NA	135518289	135438027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107397.nic	chr5	-	5081	32	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-205	-2639	combination_of_known_junctions	FALSE	canonical	2	76	junction_16	43.795262003845	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCACTATCATTTTTAAAAA	9405	False	NA	-3	True	AATAAA	-20	NA	135518317	135438027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107402.nnic	chr5	-	4134	32	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-219	-3624	at_least_one_novel_splicesite	FALSE	canonical	2	120	junction_16	38.9079599109602	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTGCTTCTGCATCCT	9391	False	NA	-3	True	TATAAA	-26	NA	135518331	135439012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107404.nic	chr5	-	4102	32	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-211	-3624	combination_of_known_junctions	FALSE	canonical	2	76	junction_16	43.795262003845	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTGCTTCTGCATCCT	9399	False	NA	-3	True	TATAAA	-26	NA	135518323	135439012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107409.nnic	chr5	-	5656	31	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-180	-2378	intron_retention	TRUE	canonical	2	120	junction_15	37.0834044943137	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAACAGGTTATATATGT	9430	False	NA	-28	True	NA	NA	NA	135518292	135437766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107415.nnic	chr5	-	5392	31	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-177	-2639	intron_retention	FALSE	canonical	2	120	junction_15	37.0834044943137	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCACTATCATTTTTAAAAA	9433	False	NA	-3	True	AATAAA	-20	NA	135518289	135438027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107416.nic	chr5	-	5396	31	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-205	-2639	intron_retention	FALSE	canonical	2	76	junction_15	42.4266818562722	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCACTATCATTTTTAAAAA	9405	False	NA	-3	True	AATAAA	-20	NA	135518317	135438027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107417.nnic	chr5	-	4412	31	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-180	-3622	intron_retention	FALSE	canonical	2	120	junction_15	37.0834044943137	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCTTCTGCATCCTAC	9430	False	NA	-1	True	TATAAA	-28	NA	135518292	135439010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107418.nic	chr5	-	4419	31	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-211	-3622	intron_retention	FALSE	canonical	2	76	junction_15	42.4266818562722	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCTTCTGCATCCTAC	9399	False	NA	-1	True	TATAAA	-28	NA	135518323	135439010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_107438.nic	chr5	-	1787	16	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-196	1365	combination_of_known_junctions	FALSE	canonical	2	166	junction_14	26.4873974225899	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAGCAGATTCCTTTGC	9414	False	NA	NA	False	NA	NA	NA	135518308	135461927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_10744.known	chr10	+	2350	9	FSM	ENSMUSG00000032763.12	ENSMUST00000220430.2	2350	9	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	18.9402844487616	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAATAAACAAGGAA	5890	False	NA	NA	False	NA	NA	NA	78410824	78418082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889
transcript_107445.known	chr5	+	4363	5	FSM	ENSMUSG00000039917.11	ENSMUST00000136748.6	4363	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	101.030626544628	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGGCATGGCC	NA	False	NA	NA	False	NA	NA	NA	135661507	135675302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135661773_135663957_135664078_135664848_135665257_135667943_135668095_135671883
transcript_107454.known	chr5	+	4207	4	FSM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	25.703436864876	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGGCTCAGTGAATAAAGT	NA	False	NA	NA	False	AATAAA	-23	NA	135661471	135675230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135661773_135664848_135665257_135667943_135668095_135671883
transcript_107464.known	chr5	+	2636	16	FSM	ENSMUSG00000005514.15	ENSMUST00000005651.13	2636	16	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_9	23.2776478384069	1286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	1901	False	NA	14	True	AATAAA	-14	NA	135717889	135764180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
transcript_10749.known	chr10	+	1606	10	FSM	ENSMUSG00000032763.12	ENSMUST00000218271.2	1606	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_9	51.1079709180283	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACATGGTAGTGTATATT	5922	False	NA	NA	False	AATAAA	-15	NA	78410856	78417593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78417247
transcript_107494.known	chr5	-	1559	12	FSM	ENSMUSG00000039886.9	ENSMUST00000043378.9	1559	12	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_10	35.0345756018723	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGGACTGTGGATGTG	5063	False	NA	-4	True	AATAAA	-21	NA	135773302	135764338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
transcript_10750.known	chr10	-	3288	8	FSM	ENSMUSG00000032714.7	ENSMUST00000040580.7	3288	8	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_5	4.14039335605413	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGACTGAGTCCTTGG	NA	False	NA	1	True	AATAAA	-15	NA	78427798	78420336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78421746_78421923_78422150_78422792_78422954_78423164_78423292_78424540_78424756_78424934_78425580_78425735_78426078_78427635
transcript_107505.known	chr5	+	1456	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	0	0	0	0	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	4107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	453	False	NA	38	True	AGTAAA	-25	NA	135807333	135819245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
transcript_107522.known	chr5	+	725	3	FSM	ENSMUSG00000019179.11	ENSMUST00000130795.2	725	3	0	0	0	0	multi-exon	FALSE	canonical	3	4848	junction_2	313	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACTCCTGCTACCCTTGA	650	False	NA	NA	False	NA	NA	NA	135807530	135813468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135807656_135812158_135812328_135813037
transcript_107523.known	chr5	+	903	3	FSM	ENSMUSG00000004951.11	ENSMUST00000005077.7	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	2181	junction_2	11	1451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGACTCCAGAGTTATTA	NA	False	NA	7	True	AATAAA	-25	NA	135916772	135918417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135917289_135917902_135917967_135918094
transcript_107524.known	chr5	+	930	2	FSM	ENSMUSG00000004951.11	ENSMUST00000111155.2	930	2	0	0	0	0	multi-exon	FALSE	canonical	3	2203	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTCTGACTCCAGAGTTAT	NA	False	NA	5	True	AATAAA	-23	NA	135916871	135918415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_135917289_135917902
transcript_10753.known	chr10	-	2336	7	FSM	ENSMUSG00000005355.10	ENSMUST00000005488.9	2336	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	2.21108319357027	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTAGAATCTTTGCTCT	NA	False	NA	NA	False	AGTAAA	-24	NA	78554128	78547824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78549276_78549823_78549928_78550081_78550232_78550768_78550995_78551094_78551245_78551653_78551721_78553940
transcript_107534.known	chr5	-	3520	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	0	0	0	0	multi-exon	FALSE	canonical	3	925	junction_1	0	4301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	-26	True	AATAAA	-14	NA	135963453	135937262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135940506_135963176
transcript_107535.known	chr5	-	417	2	FSM	ENSMUSG00000051391.10	ENSMUST00000126192.2	417	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTCCTGAATTCTTAGAG	NA	False	NA	NA	False	NA	NA	NA	135963404	135959614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135959804_135963176
transcript_107536.known	chr5	-	1610	3	FSM	ENSMUSG00000051391.10	ENSMUST00000198270.2	1610	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	462.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	-26	True	AATAAA	-14	NA	135963408	135937262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135937976_135939840_135940506_135963176
transcript_107537.known	chr5	-	2745	11	FSM	ENSMUSG00000029699.14	ENSMUST00000111152.8	2745	11	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	4.62709412050371	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTTAACTGAGGTCATT	NA	False	NA	-7	True	AATAAA	-16	NA	136003351	135989076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135990063_135990742_135990821_135991776_135992089_135992209_135992285_135993472_135993551_135994424_135994740_135994928_135995007_135996591_135996898_135997077_135997114_135999035_135999281_136003115
transcript_107539.known	chr5	-	1191	3	FSM	ENSMUSG00000029699.14	ENSMUST00000054895.4	1191	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTTTAACTGAGGTCAT	NA	False	NA	-8	True	AATAAA	-15	NA	135991181	135989077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_135990063_135990742_135990821_135991053
transcript_10754.known	chr10	+	2029	10	FSM	ENSMUSG00000005357.10	ENSMUST00000005490.10	2029	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	0.737027731190089	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAACGTGTGTTCATCAC	NA	False	NA	NA	False	GATAAA	-18	NA	78616329	78650599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_78616516_78623595_78623799_78624792_78624931_78626998_78627204_78629123_78629167_78631757_78632102_78635862_78636097_78637635_78637831_78648635_78648771_78650253
transcript_107540.known	chr5	+	1323	8	FSM	ENSMUSG00000004948.13	ENSMUST00000005073.13	1323	8	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_4	3.97953950776689	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGTGGTTTAATG	NA	False	NA	NA	False	AATAAA	-13	NA	136008952	136017478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136009297_136011492_136011612_136013015_136013120_136013201_136013386_136014398_136014517_136016108_136016201_136016325_136016463_136017253
transcript_107542.known	chr5	+	2650	11	FSM	ENSMUSG00000004947.16	ENSMUST00000111142.9	2650	11	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_6	35.5758344947803	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTGGGAAGTTTTGTGT	8459	False	NA	16	True	AATAAA	-21	NA	136023653	136061726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136055323_136055462_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
transcript_107546.known	chr5	+	2493	10	FSM	ENSMUSG00000004947.16	ENSMUST00000111145.10	2493	10	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	18.5279235376575	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCATCTGTTGGGAAG	8470	False	NA	8	True	AATAAA	-13	NA	136023664	136061718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
transcript_107555.known	chr5	+	671	4	FSM	ENSMUSG00000006143.13	ENSMUST00000139549.2	671	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTTACATATACCTG	4809	False	NA	NA	False	AATAAA	-20	NA	136088901	136093164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136089136_136090036_136090114_136090360_136090482_136092925
transcript_107560.known	chr5	+	2914	21	FSM	ENSMUSG00000004952.14	ENSMUST00000042135.14	2914	21	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_7	10.6273232754067	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGAGGTGTTGGGTTGGG	2152	False	NA	NA	False	AATAAA	-20	NA	136112769	136140714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130249_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
transcript_107566.known	chr5	+	3396	20	FSM	ENSMUSG00000004952.14	ENSMUST00000134509.8	3396	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	16.750408272198	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGAGGTGTTGGGTTGGG	2190	False	NA	NA	False	AATAAA	-20	NA	136112807	136140714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132400_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
transcript_107567.known	chr5	+	3030	20	FSM	ENSMUSG00000004952.14	ENSMUST00000152723.8	3030	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	17.3323389160023	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAATGCTGAGGTGTTGGG	2254	False	NA	NA	False	AATAAA	-15	NA	136112871	136140709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121998_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
transcript_10757.known	chr10	-	4229	6	FSM	ENSMUSG00000060301.7	ENSMUST00000039271.7	4229	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	2.33238075793812	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCAGGATATTTTATAA	NA	False	NA	0	True	NA	NA	NA	78933434	78900207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_78903886_78904467_78904563_78924120_78924214_78928245_78928339_78930264_78930392_78933291
transcript_107576.nic	chr5	+	2592	18	ISM	ENSMUSG00000004952.14	ENSMUST00000042135.14	2914	21	0	5827	0	0	5prime_fragment	FALSE	canonical	3	36	junction_7	11.2922792621444	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATGTGTACGTGTGTGAG	2152	False	NA	NA	False	AATAAA	-18	NA	136112769	136134887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130249_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457
transcript_10758.known	chr10	-	1654	6	FSM	ENSMUSG00000052151.13	ENSMUST00000063879.13	1654	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	6.89927532426414	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369630	79362263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369457
transcript_10759.known	chr10	-	1609	6	FSM	ENSMUSG00000052151.13	ENSMUST00000163602.9	1609	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	21.5462293684997	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369626	79362263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369498
transcript_107590.known	chr5	-	2473	15	FSM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	0	0	0	0	multi-exon	FALSE	canonical	3	342	junction_8	23.380722043284	1184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTTCTTGCTTGTCCT	6684	False	NA	NA	False	NA	NA	NA	136164928	136151625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
transcript_107610.known	chr5	+	646	4	FSM	ENSMUSG00000039771.14	ENSMUST00000041366.14	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_2	77.5471182930453	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCAGTGTGTGGACTG	9212	False	NA	30	True	AATAAA	-19	NA	136145484	136151801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136145660_136148848_136148939_136150942_136151118_136151595
transcript_107611.known	chr5	-	2723	4	FSM	ENSMUSG00000029703.11	ENSMUST00000139908.2	2723	4	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_2	3.77123616632825	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAATAAAAAT	6696	False	NA	NA	False	NA	NA	NA	136164916	136160528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_136161081_136161159_136162905_136163352_136163588_136164725
transcript_107612.known	chr5	+	900	3	FSM	ENSMUSG00000039771.14	ENSMUST00000111127.8	900	3	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGTCCCCCTCAGGT	9212	False	NA	NA	False	NA	NA	NA	136145484	136151577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136145660_136148848_136148939_136150942
transcript_107614.known	chr5	+	474	3	FSM	ENSMUSG00000039771.14	ENSMUST00000111129.2	474	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	632.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAATGGGGCTGTGCAG	9283	False	NA	19	True	AATAAA	-8	NA	136145555	136151790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136145660_136150942_136151118_136151595
transcript_107615.known	chr5	+	1773	3	FSM	ENSMUSG00000039754.11	ENSMUST00000041100.4	1773	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	0.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATTTCTCCTTTTCC	NA	False	NA	NA	False	AATAAA	-23	NA	136165007	136170466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136165149_136168191_136168390_136169032
transcript_107616.known	chr5	+	641	3	FSM	ENSMUSG00000039754.11	ENSMUST00000143229.2	641	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	30.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCTTGTGGCTCCTAGC	NA	False	NA	NA	False	NA	NA	NA	136165055	136169357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136165149_136168191_136168415_136169032
transcript_107617.known	chr5	+	557	3	FSM	ENSMUSG00000039754.11	ENSMUST00000136634.8	557	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	26.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCCTAGCAGGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	136164999	136169366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136165149_136168315_136168390_136169032
transcript_107618.known	chr5	+	1040	3	FSM	ENSMUSG00000039754.11	ENSMUST00000125923.2	1040	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	27.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGAGCTGTCACTGGCC	NA	False	NA	NA	False	NA	NA	NA	136165011	136169632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136165254_136168191_136168390_136169032
transcript_107621.known	chr5	-	3908	3	FSM	ENSMUSG00000039747.12	ENSMUST00000041048.6	3908	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGCTCTTGAGAAGTG	NA	False	NA	NA	False	AATAAA	-20	NA	136199567	136176312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_136179807_136190340_136190579_136199391
transcript_107625.known	chr5	-	3893	6	FSM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	42.6164287569946	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTTTTGGTTAGTGTTT	NA	False	NA	-3	True	NA	NA	NA	136227817	136206980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_136210351_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
transcript_107630.nic	chr5	-	535	5	ISM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	-47	11460	-47	-8160	5prime_fragment	FALSE	canonical	3	446	junction_1	47.1559911358037	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGATGAAACTTGAACAGA	NA	False	NA	NA	False	NA	NA	NA	136227864	136218440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
transcript_107633.nic	chr5	-	449	4	ISM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	6	13773	6	-10473	5prime_fragment	FALSE	canonical	3	535	junction_1	14.4452991200136	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGAACTTTGTCCTGTAA	NA	False	NA	NA	False	AATAAA	-42	NA	136227811	136220753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_136220840_136223150_136223252_136226633_136226713_136227628
transcript_107634.known	chr5	-	2848	9	FSM	ENSMUSG00000005057.14	ENSMUST00000005188.14	2848	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	2.73861278752583	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCTGCTCTCCTGTGGTC	2502	False	NA	NA	False	ATTAAA	-20	NA	136273757	136247002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_136248007_136248495_136248668_136250701_136250911_136253008_136253177_136253258_136253351_136254057_136254150_136256220_136256323_136260506_136261241_136273482
transcript_107636.known	chr5	-	1783	6	FSM	ENSMUSG00000005057.14	ENSMUST00000196447.2	1783	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.0591260281974	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTGAACTTTTGCT	2568	False	NA	NA	False	NA	NA	NA	136273691	136252622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_136253177_136253258_136253351_136254057_136254150_136256220_136256323_136260506_136261241_136273482
transcript_107641.known	chr5	-	2831	23	FSM	ENSMUSG00000029705.18	ENSMUST00000176745.8	2831	23	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_13	14.4244970693081	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTTTTATTCTGTG	NA	False	NA	-1	True	AATAAA	-18	NA	136596118	136276988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355787_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
transcript_107642.nic	chr5	-	3176	23	NIC	ENSMUSG00000029705.18	novel	2831	23	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_13	22.7204080541869	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTTTTATTCTGTG	NA	False	NA	-1	True	AATAAA	-18	NA	136596385	136276988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355865_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
transcript_107644.nic	chr5	-	2594	23	NIC	ENSMUSG00000029705.18	novel	2831	23	NA	NA	-126	-292	combination_of_known_junctions	FALSE	canonical	2	13	junction_13	22.7204080541869	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCCATGGAAACTGTCTC	NA	False	NA	NA	False	NA	NA	NA	136596470	136277655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355865_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
transcript_10765.nic	chr10	-	2913	14	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-24	0	intron_retention	FALSE	canonical	3	38	junction_13	53.1463314291654	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79390742	79376078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390379
transcript_107652.known	chr5	-	3290	2	FSM	ENSMUSG00000029705.18	ENSMUST00000177305.2	3290	2	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	CATAAA	-36	NA	136596344	136511728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_136514706_136596031
transcript_107654.nnic	chr5	-	2451	11	NNC	ENSMUSG00000004415.16	novel	2724	13	NA	NA	-9781	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_10	9.19565114605812	71	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTGTGGCTTGTCAG	858	False	NA	0	True	AATAAA	-19	NA	136811681	136770612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_136772061_136773016_136773102_136775874_136775923_136777177_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768_136783868_136786485_136786643_136794155_136794218_136811455
transcript_107655.nnic	chr5	-	2351	11	NNC	ENSMUSG00000004415.16	novel	2724	13	NA	NA	-9781	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	14.6068477092082	54	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTGTGGCTTGTCAG	858	False	NA	0	True	AATAAA	-19	NA	136811681	136770612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_136772061_136773016_136773102_136775874_136775923_136777177_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768_136783868_136786485_136786643_136794155_136794218_136811555
transcript_107659.known	chr5	+	3071	5	FSM	ENSMUSG00000007987.13	ENSMUST00000200157.5	3071	5	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	11.0989864402116	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTATCTCGTCTCACTTT	4055	False	NA	NA	False	AATAAA	-23	NA	136937003	136944258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542_136940746_136941678
transcript_107660.known	chr5	+	637	5	FSM	ENSMUSG00000007987.13	ENSMUST00000008131.10	637	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	33.8415425180354	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAAAGCTGCCCTGCTTG	4148	False	NA	-57	True	NA	NA	NA	136937096	136942035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940660_136940746_136941678
transcript_107662.known	chr5	+	670	4	FSM	ENSMUSG00000007987.13	ENSMUST00000200153.5	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	7.34846922834953	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAAAAGTTTTTTCATAG	4107	False	NA	NA	False	NA	NA	NA	136937055	136940976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542
transcript_107663.known	chr5	+	617	4	FSM	ENSMUSG00000097908.8	ENSMUST00000197095.5	617	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	17.326921891156	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTTCATCTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	136948205	136962539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962315
transcript_107664.known	chr5	+	3967	4	FSM	ENSMUSG00000097908.8	ENSMUST00000181045.8	3967	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	24.0878023535196	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCAGCCTCGCTTTTTT	NA	False	NA	24	True	AATAAA	-13	NA	136947999	136965960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962592
transcript_107665.known	chr5	+	948	5	FSM	ENSMUSG00000019054.14	ENSMUST00000111094.8	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	181.92443486239	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTGTGTGAGCGAG	4051	False	NA	18	True	AATAAA	-19	NA	136982128	136995086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136982445_136991852_136991986_136993946_136994024_136994418_136994525_136994770
transcript_107666.known	chr5	+	786	5	FSM	ENSMUSG00000019054.14	ENSMUST00000019198.7	786	5	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	76.6823806359714	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGTGTGAGCGAGCA	3268	False	NA	20	True	AATAAA	-21	NA	136990930	136995088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136991083_136991852_136991986_136993946_136994024_136994418_136994525_136994770
transcript_107667.known	chr5	+	601	4	FSM	ENSMUSG00000019054.14	ENSMUST00000111097.8	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	234.963827003222	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCTTAGCCCCTGC	4182	False	NA	-65	True	NA	NA	NA	136982259	136995003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_136982445_136993946_136994024_136994418_136994525_136994770
transcript_10767.known	chr10	-	2676	14	FSM	ENSMUSG00000042570.15	ENSMUST00000165028.8	2676	14	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_13	38.1023225308973	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79391033	79376078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
transcript_107673.nnic	chr5	+	2916	20	NNC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	25	-109	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	42.0605683834917	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGAGTCCGTGAGTCCA	NA	False	NA	13	True	AATAAA	-14	NA	137015897	137025393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_137016229_137016458_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
transcript_107679.known	chr5	+	3280	19	FSM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	18.3673926051335	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTGAGTGTGTG	NA	False	NA	NA	False	ATTAAA	-24	NA	137015872	137025502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
transcript_107680.nnic	chr5	+	3066	19	NNC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	45	-109	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_16	43.3148108561745	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGAGTCCGTGAGTCCA	NA	False	NA	13	True	AATAAA	-14	NA	137015917	137025393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137023056_137023144_137023786_137023913_137024959
transcript_10769.nic	chr10	-	2895	14	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-4	0	intron_retention	FALSE	canonical	3	9	junction_12	74.8559168270863	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79390915	79376078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385688_79386149_79386241_79390744
transcript_107697.known	chr5	-	740	5	FSM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	104.169033306449	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137015755	137011043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137015664
transcript_107698.known	chr5	-	1208	5	FSM	ENSMUSG00000059518.15	ENSMUST00000156963.8	1208	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	134.024251536802	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGTCAGGGTTGACTG	NA	False	NA	32	True	NA	NA	NA	137016875	137011017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137016342
transcript_10770.nic	chr10	-	2775	14	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-3	0	intron_retention	FALSE	canonical	3	9	junction_12	62.3803944318041	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79390958	79376078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385688_79386149_79386241_79390907
transcript_107701.known	chr5	-	764	4	FSM	ENSMUSG00000059518.15	ENSMUST00000034953.14	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	111.749720357592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGCTCATTCTGGG	NA	False	NA	2	True	AATAAA	-18	NA	137015683	137011047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137015664
transcript_107702.known	chr5	-	698	4	FSM	ENSMUSG00000059518.15	ENSMUST00000111090.9	698	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	144.270579121316	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTGCCCTGCCGACCAA	NA	False	NA	-100	True	NA	NA	NA	137016397	137011149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137016342
transcript_107708.known	chr5	-	1353	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTTGGCTTTGTTGG	NA	False	NA	1	True	AATAAA	-25	NA	137074989	137063846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
transcript_107709.known	chr5	-	483	4	FSM	ENSMUSG00000004849.15	ENSMUST00000144303.2	483	4	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_3	64.1162139313363	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGGAGGAGGATTAC	NA	False	NA	NA	False	NA	NA	NA	137074896	137066249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137066410_137070622_137070732_137071917_137072097_137074861
transcript_107714.known	chr5	-	1268	2	FSM	ENSMUSG00000037411.11	ENSMUST00000199832.2	1268	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAGAAAAGAAAAGATTG	8086	False	NA	NA	False	NA	NA	NA	137101122	137099030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137100159_137100982
transcript_107715.known	chr5	+	1037	1	FSM	ENSMUSG00000051502.8	ENSMUST00000052825.7	1037	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGCCCAGCCTGTGTTT	1544	False	NA	7	True	NA	NA	NA	137292890	137293927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137292900_137293900
transcript_107725.known	chr5	-	2972	20	FSM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	165.9658376889	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8265	False	NA	-12	True	AGTAAA	-18	NA	137305928	137293976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137294169_137294248_137294355_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
transcript_107734.known	chr5	-	3024	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTATGTCCCTTCCCAA	8257	False	NA	-1	True	AGTAAA	-29	NA	137305936	137293965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
transcript_10776.nic	chr10	-	3063	13	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-2	0	intron_retention	FALSE	canonical	3	111	junction_12	34.2502027569019	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79390950	79376078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79377034_79377347_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
transcript_10777.nic	chr10	-	3305	13	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	15	0	intron_retention	FALSE	canonical	3	9	junction_11	63.1929914362872	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79391018	79376078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79377034_79377347_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385688_79386149_79386241_79390907
transcript_107783.nic	chr5	-	1230	7	ISM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	-55	4280	-47	-122	5prime_fragment	FALSE	canonical	3	627	junction_2	39.679619733841	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGATGAGAAGAAAGAAGATG	8210	False	NA	2	True	NA	NA	NA	137305983	137298256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
transcript_107787.known	chr5	-	3001	19	FSM	ENSMUSG00000037364.13	ENSMUST00000198526.5	3001	19	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	246.227361558879	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTAACTGTGTGCTGTA	8510	False	NA	-14	True	AGTAAA	-16	NA	137305683	137293978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298010_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307
transcript_107788.known	chr5	-	2168	9	FSM	ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_6	14.9248115565993	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTCTGCTGGTCTTTCA	1527	False	NA	NA	False	CATAAA	-41	NA	137312666	137307915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967_137311352_137311612_137311739_137311842_137311971_137312221
transcript_10779.nnic	chr10	-	2179	13	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-3	0	intron_retention	FALSE	canonical	3	14	junction_1	63.0349880798134	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTGTCTCATGGATTCC	NA	False	NA	-4	True	ATTAAA	-15	NA	79390958	79376079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79377034_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
transcript_107795.known	chr5	-	3330	14	FSM	ENSMUSG00000037344.15	ENSMUST00000039991.14	3330	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.75307437100782	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTGGTGGAGCACTGCT	6501	False	NA	0	True	AATAAA	-15	NA	137331859	137312819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137314100_137319655_137319803_137320657_137320833_137320977_137321171_137321308_137321434_137323584_137323668_137323778_137323937_137325632_137325745_137325858_137325967_137326698_137327008_137329204_137329337_137330387_137330523_137330717_137330941_137331709
transcript_107801.known	chr5	-	1815	4	FSM	ENSMUSG00000037344.15	ENSMUST00000149847.2	1815	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	5.18544972870135	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAGAAAAGA	6501	False	NA	NA	False	NA	NA	NA	137331859	137328029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137329337_137330387_137330523_137330717_137330941_137331709
transcript_107803.known	chr5	+	4296	17	FSM	ENSMUSG00000029710.16	ENSMUST00000111055.9	4296	17	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	71.8852166651809	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCAGAGGGTGACTGGGA	NA	False	NA	19	True	AATAAA	-22	NA	137348433	137372782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137348912_137352350_137352422_137352541_137352830_137355803_137356201_137358626_137358783_137359395_137359729_137360624_137360777_137361420_137361587_137363209_137363313_137363714_137363780_137363885_137364000_137364802_137365051_137367974_137368191_137368972_137369123_137370285_137370480_137370646_137370803_137371773
transcript_107807.known	chr5	+	4340	17	FSM	ENSMUSG00000029710.16	ENSMUST00000061244.15	4340	17	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	33.7925657504724	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGACTGGGAGCTGGGGT	NA	False	NA	27	True	AATAAA	-30	NA	137348370	137372790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137348912_137352350_137352422_137352541_137352830_137355803_137356201_137358626_137358783_137359395_137359729_137360651_137360777_137361420_137361587_137363209_137363313_137363714_137363780_137363885_137364000_137364802_137365051_137367974_137368191_137368972_137369123_137370285_137370480_137370646_137370803_137371773
transcript_107819.nnic	chr5	+	4459	28	Fusion	ENSMUSG00000106237.2_ENSMUSG00000029714.12	novel	5440	24	NA	NA	-50	-1823	multi-exon	TRUE	canonical	0	0	junction_24	18.8149606293562	137	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAGGCTGAAAGGAAAAAA	NA	False	NA	82	True	NA	NA	NA	137508464	137524374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr5_+_137508883_137515646_137515874_137516743_137516875_137516949_137517016_137517139_137517249_137517344_137517475_137517571_137517668_137517767_137517880_137517998_137518108_137518289_137518331_137518473_137518639_137518808_137519063_137519146_137519265_137520109_137520245_137520384_137520486_137520639_137520812_137520922_137521090_137521216_137521318_137521398_137521519_137521663_137521765_137522060_137522144_137522223_137522371_137522450_137522676_137522912_137523104_137523192_137523354_137523433_137523622_137523691_137523822_137523913
transcript_107832.nnic	chr5	+	4393	27	Fusion	ENSMUSG00000106237.2_ENSMUSG00000029714.12	novel	5440	24	NA	NA	-50	-1823	multi-exon	FALSE	canonical	0	0	junction_23	18.3778552102844	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAGGCTGAAAGGAAAAAA	NA	False	NA	82	True	NA	NA	NA	137508464	137524374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr5_+_137508883_137515646_137515874_137516743_137516875_137517139_137517249_137517344_137517475_137517571_137517668_137517767_137517880_137517998_137518108_137518289_137518331_137518473_137518639_137518808_137519063_137519146_137519265_137520109_137520245_137520384_137520486_137520639_137520812_137520922_137521090_137521216_137521318_137521398_137521519_137521663_137521765_137522060_137522144_137522223_137522371_137522450_137522676_137522912_137523104_137523192_137523354_137523433_137523622_137523691_137523822_137523913
transcript_107892.known	chr5	-	1860	10	FSM	ENSMUSG00000029713.16	ENSMUST00000031726.15	1860	10	0	0	0	0	multi-exon	FALSE	canonical	3	634	junction_9	47.0030206541801	1053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTCTCCTTGCTTACTG	1532	False	NA	-5	True	CATAAA	-22	NA	137531772	137526388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704_137527772_137527864_137528028_137528107_137528172_137528445_137528553_137528659_137528699_137528956_137529103_137531400
transcript_1079.known	chr1	+	2245	13	FSM	ENSMUSG00000026117.11	ENSMUST00000027291.7	2245	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13.1790553530972	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTATTCTCATCTTCCCT	NA	False	NA	4	True	AATAAA	-17	NA	36800878	36821899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36801024_36809882_36810294_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
transcript_107905.known	chr5	-	881	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_1	0	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCTTCGAATGGCCTC	1639	False	NA	-33	True	AATAAA	-19	NA	137500780	137499700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137500342_137500540
transcript_107906.known	chr5	-	988	1	FSM	ENSMUSG00000029715.6	ENSMUST00000111035.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTCGAATGGCCTCT	1732	False	NA	-32	True	AATAAA	-20	NA	137500687	137499699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137499700_137500700
transcript_107907.known	chr5	+	956	1	FSM	ENSMUSG00000105851.2	ENSMUST00000197965.2	956	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGACTCAACTGTCTTAG	NA	False	NA	NA	False	AATAAA	-30	NA	137500934	137501890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137500900_137501900
transcript_107908.known	chr5	-	712	2	FSM	ENSMUSG00000029713.16	ENSMUST00000167225.2	712	2	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGTCTCCTTGCTTACT	6122	False	NA	-6	True	CATAAA	-21	NA	137527182	137526389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137526872_137526952
transcript_107909.known	chr5	-	1470	9	FSM	ENSMUSG00000029713.16	ENSMUST00000111020.8	1470	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	239.131240117221	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAAAGGAACCACTT	1745	False	NA	20	True	NA	NA	NA	137531559	137526419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704_137527772_137527864_137528028_137528107_137528172_137528445_137528553_137528659_137528699_137531400
transcript_10791.known	chr10	-	6729	2	FSM	ENSMUSG00000045912.10	ENSMUST00000059699.9	6729	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGAGTGGTCATGTCCT	NA	False	NA	NA	False	NA	NA	NA	79449834	79442687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79449173_79449590
transcript_107910.known	chr5	+	2966	20	FSM	ENSMUSG00000029716.14	ENSMUST00000199054.5	2966	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.76904135536124	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAGCTTCCTCTTCATG	3596	False	NA	NA	False	AATAAA	-29	NA	137568130	137585741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137568257_137568333_137568381_137569249_137569304_137569538_137569786_137569875_137570054_137572648_137572790_137572869_137572982_137573075_137573199_137575719_137575837_137575927_137576068_137577140_137577305_137578428_137578549_137580850_137580934_137581019_137581084_137581180_137581249_137581335_137581413_137581492_137581578_137581666_137581895_137582187_137582329_137585090
transcript_107918.nnic	chr5	-	1290	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.835320399634	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9612	False	NA	-10	True	ATTAAA	-21	NA	137599326	137594906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
transcript_107925.nnic	chr5	-	1166	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-18	0	intron_retention	TRUE	non_canonical	0	0	junction_1	101.456197445006	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9934	False	NA	-10	True	ATTAAA	-21	NA	137599004	137594906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_107929.nnic	chr5	-	1623	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-17	0	intron_retention	TRUE	non_canonical	0	0	junction_1	101.456197445006	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9601	False	NA	-10	True	ATTAAA	-21	NA	137599337	137594906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_10793.known	chr10	-	3243	13	FSM	ENSMUSG00000020312.13	ENSMUST00000020564.7	3243	13	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	3.42681419915868	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACTTCTGGTGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	79473752	79454485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79455934_79456887_79457022_79458088_79458400_79459660_79459826_79461926_79461991_79462088_79462255_79462633_79462761_79462853_79462906_79463028_79463083_79465656_79465777_79465901_79465963_79467098_79467170_79473282
transcript_107933.known	chr5	-	1318	5	FSM	ENSMUSG00000037221.14	ENSMUST00000111007.8	1318	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	14.7054411698527	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9968	False	NA	-10	True	ATTAAA	-21	NA	137598970	137594906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_107934.known	chr5	+	580	1	FSM	ENSMUSG00000105408.2	ENSMUST00000198801.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAGAAAATGACTGAATA	2844	False	NA	NA	False	NA	NA	NA	137599854	137600434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137599900_137600400
transcript_107941.known	chr5	-	1626	9	FSM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_8	116.165560731225	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTGTCTGAGGTTCTGT	4023	False	NA	-2	True	AATAAA	-21	NA	137609749	137603364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
transcript_107943.known	chr5	+	4464	22	FSM	ENSMUSG00000029720.10	ENSMUST00000177545.2	4464	22	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_21	33.9740463834439	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	2238	False	NA	23	True	AATAAA	-15	NA	137627436	137641161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
transcript_107950.known	chr5	+	3078	18	FSM	ENSMUSG00000093445.8	ENSMUST00000031734.16	3078	18	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_8	20.6479805391719	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGGTGTGTGCCTGCC	2184	False	NA	25	True	AATAAA	-27	NA	137627382	137639356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209
transcript_107956.nic	chr5	+	3026	17	NIC	ENSMUSG00000093445.8	novel	3078	18	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_13	69.3322785126091	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGGTGTGTGCCTGCC	2152	False	NA	25	True	AATAAA	-27	NA	137627350	137639356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137637383_137637461_137637611_137637750_137637839_137637918_137638209
transcript_107975.known	chr5	+	1005	6	FSM	ENSMUSG00000079165.11	ENSMUST00000177466.8	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	39.5858560599616	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGTTGACAATAAATCA	1101	False	NA	-8	True	NA	NA	NA	137639595	137641130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
transcript_107978.known	chr5	+	2209	18	FSM	ENSMUSG00000093445.8	ENSMUST00000176667.8	2209	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	70.0872417297699	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGTGTGCCTGCCTGTCC	2241	False	NA	30	True	AATAAA	-32	NA	137627439	137639361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137639026
transcript_107979.known	chr5	-	2858	13	FSM	ENSMUSG00000029722.16	ENSMUST00000100544.11	2858	13	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_7	43.0686628794327	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	1810	False	NA	NA	False	NA	NA	NA	137682942	137648746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137658423_137658457_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
transcript_107983.known	chr5	-	2893	12	FSM	ENSMUSG00000029722.16	ENSMUST00000031736.16	2893	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	17.5678142969908	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGAGTGTCTTGTTTTG	1764	False	NA	NA	False	NA	NA	NA	137682988	137648724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
transcript_10799.known	chr10	+	1436	5	FSM	ENSMUSG00000020310.10	ENSMUST00000020554.8	1436	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	3.08220700148449	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGGCATATTCTTTCG	3155	False	NA	NA	False	AATAAA	-14	NA	79500392	79504371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79500502_79500745_79501013_79501264_79501592_79502172_79502605_79504070
transcript_107992.known	chr5	-	3912	7	FSM	ENSMUSG00000045348.17	ENSMUST00000061789.14	3912	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	12.2836838484589	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATAATATATTAAAAGAC	8118	False	NA	-32	True	TTTAAA	-14	NA	137739869	137729174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137730196_137731312_137731423_137731977_137732188_137733101_137734617_137736070_137736418_137737912_137738065_137739312
transcript_107997.known	chr5	+	3983	5	FSM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	32.7595405950694	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTGAGCCATCTCTCC	NA	False	NA	NA	False	NA	NA	NA	137744257	137759670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137757328
transcript_108.known	SIRV3	-	479	3	FSM	SIRV3B	SIRV308	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	5391	junction_1	17	514	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATTTGTATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	1982	1000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_-_1168_1532_1765_1902
transcript_10800.known	chr10	+	944	4	FSM	ENSMUSG00000020310.10	ENSMUST00000217748.2	944	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	3.29983164553722	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGCCCAGAGCTAAATAAAA	3183	False	NA	NA	False	NA	NA	NA	79500420	79504339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79500502_79500745_79501013_79501264_79501592_79504070
transcript_108004.known	chr5	+	2989	3	FSM	ENSMUSG00000029723.17	ENSMUST00000129349.2	2989	3	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	137744220	137750990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137744677_137745109_137746122_137749469
transcript_108006.known	chr5	+	956	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777165	137778372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
transcript_108008.known	chr5	+	430	3	FSM	ENSMUSG00000029725.11	ENSMUST00000126126.8	430	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	199	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGGAAGGGATGCAGGG	NA	False	NA	NA	False	NA	NA	NA	137777110	137778024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137777160_137777563_137777808_137777887
transcript_108009.nic	chr5	+	1054	3	ISM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	-7	0	-7	0	intron_retention	FALSE	canonical	3	301	junction_1	64	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777158	137778372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_137777484_137777563_137777808_137777887
transcript_10801.known	chr10	+	1101	2	FSM	ENSMUSG00000020308.8	ENSMUST00000239401.2	1101	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCTTGCTGGTCACCT	8006	False	NA	10	True	AATAAA	-12	NA	79505243	79511960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79505618_79511233
transcript_108013.known	chr5	-	3128	4	FSM	ENSMUSG00000029726.17	ENSMUST00000031740.16	3128	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	12.2474487139159	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTCCAGCACTTTCTA	2726	False	NA	-6	True	AATAAA	-29	NA	137784925	137780167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137780747_137780856_137780984_137781391_137781611_137782722
transcript_108014.known	chr5	-	524	4	FSM	ENSMUSG00000029726.17	ENSMUST00000132726.2	524	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	65.2703778311588	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTCTGAGAAGTTGTAAA	2674	False	NA	NA	False	NA	NA	NA	137784977	137780690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_137780747_137780856_137780984_137781391_137781611_137784855
transcript_108016.known	chr5	+	2222	17	FSM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	16.2498798072478	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTTTGTGTGTGTGT	7077	False	NA	32	True	AATAAA	-25	NA	137786059	137820883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
transcript_108018.nic	chr5	+	484	3	ISM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	-42	25811	-42	934	5prime_fragment	FALSE	canonical	3	68	junction_1	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGGTCAGGGTCACACT	7035	False	NA	NA	False	AAGAAA	-1	NA	137786017	137795072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_137786208_137793752_137793808_137794833
transcript_10802.known	chr10	+	368	2	FSM	ENSMUSG00000020308.8	ENSMUST00000219585.2	368	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCAGAACCGGCATGCT	8479	False	NA	NA	False	NA	NA	NA	79505716	79511432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79505886_79511233
transcript_108022.known	chr5	+	2310	5	FSM	ENSMUSG00000037017.16	ENSMUST00000110961.9	2310	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	38.7774096607806	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115177	138132527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138115270_138116097_138116183_138123239_138123953_138124715_138124909_138131300
transcript_108024.known	chr5	+	2134	4	FSM	ENSMUSG00000037017.16	ENSMUST00000080732.10	2134	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	59.1626759217517	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCGTCTCAGGACTGTT	NA	False	NA	4	True	AATAAA	-13	NA	138115198	138132476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138115251_138123239_138123953_138124715_138124909_138131300
transcript_108025.known	chr5	+	2204	4	FSM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	50.6776303927307	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115198	138132527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138115270_138123239_138123953_138124715_138124909_138131300
transcript_108026.known	chr5	-	6470	5	FSM	ENSMUSG00000037007.18	ENSMUST00000049393.15	6470	5	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_2	1.4790199457749	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGGACTTGGGTATCTG	1711	False	NA	-1	True	TTTAAA	-19	NA	138154006	138137963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138143975_138148868_138148996_138149466_138149559_138151106_138151232_138153891
transcript_10803.known	chr10	+	278	2	FSM	ENSMUSG00000020308.8	ENSMUST00000220175.2	278	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCGGCCGCAAGAAGAAACC	8509	False	NA	NA	False	NA	NA	NA	79505746	79511282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79505976_79511233
transcript_108038.known	chr5	+	3479	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_6	9.89356624586021	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGGTGCATTCCTATA	8077	False	NA	18	True	NA	NA	NA	138170263	138178691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
transcript_108052.known	chr5	-	2962	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	0	0	0	0	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	5479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTAGAGTTTTTAGTATG	1716	False	NA	-8	True	AATAAA	-32	NA	138170684	138162844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
transcript_108066.nic	chr5	-	2396	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	170	junction_14	144.727259325383	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1946	False	NA	-4	True	AATAAA	-18	NA	138185494	138176878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
transcript_108070.known	chr5	-	2308	15	FSM	ENSMUSG00000036980.14	ENSMUST00000110936.8	2308	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_14	183.295568157341	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	9932	False	NA	-4	True	AATAAA	-18	NA	138185713	138176878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185652
transcript_10808.nnic	chr10	+	1187	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	-392	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	299	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCAGGACCCGTGTGGGC	NA	False	NA	25	True	AATAAA	-16	NA	79517636	79523927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_79518068_79518233_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_10809.nnic	chr10	+	1543	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	-447	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	1636	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCTGAGAGAATCACCT	NA	False	NA	17	True	AATAAA	-17	NA	79517581	79524228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_79518068_79518233_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_1081.nnic	chr1	+	2411	13	NNC	ENSMUSG00000026117.11	novel	1338	6	NA	NA	315	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	12.51970668808	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGAGTATTCTCATCTTC	NA	False	NA	1	True	AATAAA	-14	NA	36806329	36821896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_36806644_36809882_36810294_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
transcript_108147.known	chr5	+	1098	10	FSM	ENSMUSG00000019494.15	ENSMUST00000110951.8	1098	10	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	1439.16262518466	1944	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGCCCTTCCAGTGGC	NA	False	NA	11	True	AATAAA	-12	NA	138159361	138162240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138159453_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
transcript_10816.nnic	chr10	+	1530	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	-405	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	476	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCTGAGAGAATCACCT	NA	False	NA	17	True	AATAAA	-17	NA	79517623	79524228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_79518097_79518233_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_108166.known	chr5	-	986	2	FSM	ENSMUSG00000029730.17	ENSMUST00000125316.2	986	2	0	0	0	0	multi-exon	FALSE	canonical	3	2180	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	8422	False	NA	-25	True	AATAAA	-15	NA	138163978	138162861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138163183_138163313
transcript_108167.known	chr5	-	2304	15	FSM	ENSMUSG00000036980.14	ENSMUST00000048698.14	2304	15	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_14	100.146932869985	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1952	False	NA	-4	True	AATAAA	-18	NA	138185488	138176878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
transcript_108168.known	chr5	+	1855	6	FSM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	26.1350339582714	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAGTGTAATACATAATA	5598	False	NA	NA	False	AAAACA	-12	NA	138185746	138192180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
transcript_108170.nnic	chr5	+	1543	6	NNC	ENSMUSG00000036968.16	novel	1855	6	NA	NA	-40	-277	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	58.8204046228857	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGCTGAGTCCCATTTC	5558	False	NA	14	True	ATTAAA	-14	NA	138185706	138191903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190897_138190941_138191026
transcript_108172.known	chr5	+	1308	1	FSM	ENSMUSG00000049285.5	ENSMUST00000057773.5	1308	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTCCTGATGTAAATGC	5031	False	NA	NA	False	AATAAA	-17	NA	138192575	138193883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138192600_138193900
transcript_108173.known	chr5	+	877	4	FSM	ENSMUSG00000050552.9	ENSMUST00000062067.8	877	4	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	67.9084350839832	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTGTGCACAGAATGGT	NA	False	NA	35	True	AATAAA	-27	NA	138253743	138257657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138254066_138254514_138254596_138256916_138257035_138257301
transcript_108174.known	chr5	+	980	3	FSM	ENSMUSG00000050552.9	ENSMUST00000160157.2	980	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	14	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACAGAATGGTTTG	NA	False	NA	38	True	AATAAA	-30	NA	138254092	138257660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138254596_138256916_138257035_138257301
transcript_108177.known	chr5	-	2490	11	FSM	ENSMUSG00000036948.18	ENSMUST00000048421.14	2490	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	7.05761999543756	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTTGTCTGTGTGTTGA	9255	False	NA	0	True	ATTAAA	-20	NA	138262256	138257917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138258657_138258775_138258970_138259096_138259252_138259814_138259979_138260063_138260147_138260431_138260580_138260675_138260797_138260919_138261007_138261108_138261239_138261328_138261425_138261683
transcript_108195.known	chr5	-	2586	10	FSM	ENSMUSG00000029510.16	ENSMUST00000161827.8	2586	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	3.67507453523138	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTCTCTGTGTGTGTA	1721	False	NA	0	True	AATAAA	-20	NA	138278267	138271916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138272832_138273716_138273887_138273968_138274109_138274190_138274338_138274469_138274601_138274845_138275009_138275668_138275750_138276476_138276800_138277100_138277260_138277910
transcript_108196.known	chr5	+	743	3	FSM	ENSMUSG00000085227.2	ENSMUST00000124298.2	743	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGACACAAGTTTATATT	6175	False	NA	NA	False	NA	NA	NA	138262304	138264923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138262364_138264018_138264268_138264488
transcript_108197.known	chr5	+	624	2	FSM	ENSMUSG00000085227.2	ENSMUST00000141454.2	624	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTGACTGAGGAGAAAATG	6186	False	NA	NA	False	AAGAAA	-15	NA	138262315	138264594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138262364_138264018
transcript_108199.known	chr5	-	2059	4	FSM	ENSMUSG00000075593.11	ENSMUST00000161279.8	2059	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTATTTTTTAAAAGGT	8925	False	NA	NA	False	AATAAA	-14	NA	138271063	138263199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138264569_138269029_138269334_138269540_138269857_138270993
transcript_108201.nic	chr5	+	4392	34	NIC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	68	0	combination_of_known_junctions	TRUE	canonical	2	29	junction_1	25.0320272353535	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTATGACTTGAGATTG	NA	False	NA	17	True	AATAAA	-17	NA	138278569	138310652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_138278883_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
transcript_108202.known	chr5	+	4123	34	FSM	ENSMUSG00000036928.15	ENSMUST00000162245.8	4123	34	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	28.1737362148663	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGACTTGAGATTGTCA	NA	False	NA	20	True	AATAAA	-20	NA	138278805	138310655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138278847_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
transcript_108203.known	chr5	+	4211	34	FSM	ENSMUSG00000036928.15	ENSMUST00000048028.15	4211	34	0	0	0	0	multi-exon	FALSE	canonical	2	72	junction_1	21.1857845161499	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGACTTGAGATTGTCA	NA	False	NA	20	True	AATAAA	-20	NA	138278787	138310655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
transcript_108237.known	chr5	+	4456	31	FSM	ENSMUSG00000036928.15	ENSMUST00000159483.8	4456	31	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	34.4118196748346	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTATGACTTGAGATTG	NA	False	NA	17	True	AATAAA	-17	NA	138278787	138310652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297581_138297691_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
transcript_108245.nic	chr5	+	4819	30	NIC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	-9	0	intron_retention	FALSE	canonical	2	26	junction_16	27.2873902138863	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTATGACTTGAGATTG	NA	False	NA	17	True	AATAAA	-17	NA	138278761	138310652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
transcript_108254.known	chr5	+	869	5	FSM	ENSMUSG00000036898.17	ENSMUST00000100524.3	869	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	23.7276210354093	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGAGAAGCCTTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	138439801	138454589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453352_138454140
transcript_108257.known	chr5	+	932	3	FSM	ENSMUSG00000036898.17	ENSMUST00000151095.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGATGGAGTTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	138439772	138446462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138439892_138443013_138443141_138445776
transcript_108259.known	chr5	-	2254	6	FSM	ENSMUSG00000058291.15	ENSMUST00000063262.11	2254	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	25.9584283037321	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGATCTTTGTTTG	1752	False	NA	-9	True	AATAAA	-10	NA	138618002	138604381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614822_138615316_138615430_138617870
transcript_108260.known	chr5	-	4749	6	FSM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	14.2632394637403	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTCATTTTAATTTCTT	1731	False	NA	NA	False	ATTAAA	-16	NA	138618023	138601913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614828_138615316_138615430_138617870
transcript_108263.known	chr5	-	3318	5	FSM	ENSMUSG00000058291.15	ENSMUST00000085852.11	3318	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	27.3530162870569	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CATAAAAAAATTAATGAAAA	1734	False	NA	NA	False	NA	NA	NA	138618020	138603245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138615316_138615430_138617870
transcript_108265.nnic	chr5	+	3013	5	NNC	ENSMUSG00000056014.16	novel	3038	4	NA	NA	-18	0	intron_retention	FALSE	non_canonical	0	0	junction_4	11.7686022959398	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGGACACTCTCCTT	1789	False	NA	49	True	AATAAA	-16	NA	138621102	138647098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_138621251_138634425_138634553_138637756_138637850_138644375_138646892_138646969
transcript_108268.known	chr5	+	3038	4	FSM	ENSMUSG00000056014.16	ENSMUST00000069862.11	3038	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	4.92160768674447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGGACACTCTCCTT	1842	False	NA	49	True	AATAAA	-16	NA	138621155	138647098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138621251_138634425_138634553_138637756_138637850_138644375
transcript_108269.known	chr5	+	3582	10	FSM	ENSMUSG00000025854.16	ENSMUST00000026972.8	3582	10	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_4	3.46410161513775	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGGGACTCACTCCTT	NA	False	NA	17	True	AATAAA	-30	NA	138740268	138795832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_138741981_138743555_138743735_138752383_138752463_138778941_138779035_138780748_138780865_138791961_138792143_138793005_138793116_138793228_138793311_138793790_138793851_138794862
transcript_108270.known	chr5	-	1363	8	FSM	ENSMUSG00000025856.16	ENSMUST00000110896.2	1363	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	172.66459169294	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAACAAAAAAAA	9978	False	NA	NA	False	AAAACA	-14	NA	138983125	138962725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463_138980594_138981953_138982152_138982864
transcript_108273.known	chr5	-	1287	7	FSM	ENSMUSG00000025856.16	ENSMUST00000110897.8	1287	7	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	122.688969892706	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAACAAAAAAAACAA	NA	False	NA	NA	False	AAAACA	-43	NA	138981842	138962696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463_138980594_138981488
transcript_108276.known	chr5	-	691	6	FSM	ENSMUSG00000025856.16	ENSMUST00000144934.8	691	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	159.651620724627	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCATTGCCAATGTGCG	NA	False	NA	NA	False	NA	NA	NA	138980036	138962899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138979945
transcript_108278.nic	chr5	-	1199	6	NIC	ENSMUSG00000025856.16	novel	1287	7	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	151.854667363239	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAACAAAAAAAACAA	NA	False	NA	NA	False	AAAACA	-43	NA	138981884	138962696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138981488
transcript_10828.known	chr10	+	1078	6	FSM	ENSMUSG00000020307.16	ENSMUST00000166603.2	1078	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	763.990157004657	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCTGAGAGAATCACCT	NA	False	NA	17	True	AATAAA	-17	NA	79518137	79524228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79518159_79518233_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_108280.known	chr5	-	2637	11	FSM	ENSMUSG00000025855.14	ENSMUST00000026973.14	2637	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	3.06757233003559	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGGAGCCTCTGTCTAAA	NA	False	NA	-2	True	ATTAAA	-26	NA	139115514	139003060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139004587_139005810_139005893_139022788_139022911_139028189_139028251_139036412_139036572_139048308_139048356_139049010_139049073_139092375_139092468_139094238_139094410_139113341_139113541_139115398
transcript_108282.known	chr5	+	3450	13	FSM	ENSMUSG00000025857.11	ENSMUST00000026975.11	3450	13	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_3	24.0323855569012	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGCCATCTGTGTGAT	NA	False	NA	11	True	ATTAAA	-19	NA	139135977	139172265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139136591_139137237_139137423_139138594_139138720_139139112_139139232_139147455_139147689_139148953_139149167_139151814_139151959_139155928_139156098_139159880_139160029_139163669_139163821_139167171_139167329_139170282_139170475_139171264
transcript_108291.known	chr5	+	4134	23	FSM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_7	179.419817953258	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTCTTATCTCTGCC	NA	False	NA	33	True	AATAAA	-19	NA	139186391	139235595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_1083.nnic	chr1	+	2010	12	NNC	ENSMUSG00000026117.11	novel	1338	6	NA	NA	272	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.0288908414713	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGAGTATTCTCATCTTC	NA	False	NA	1	True	AATAAA	-14	NA	36810344	36821896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_36810669_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
transcript_108302.known	chr5	+	3955	22	FSM	ENSMUSG00000036817.15	ENSMUST00000110884.9	3955	22	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_8	208.642464528521	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186414	139235550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_108304.known	chr5	+	2608	22	FSM	ENSMUSG00000036817.15	ENSMUST00000078690.13	2608	22	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_6	196.102233969428	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCTGTATATACCAAGAC	NA	False	NA	NA	False	NA	NA	NA	139186434	139234304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_108312.nic	chr5	+	3817	21	NIC	ENSMUSG00000036817.15	novel	3955	22	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	224	junction_6	225.20792614826	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186360	139235550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_108321.known	chr5	+	3714	20	FSM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	213.143404315789	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186397	139235550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_108322.nic	chr5	+	4027	19	NIC	ENSMUSG00000036817.15	novel	3714	20	NA	NA	-406	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_6	224.162701328001	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139185985	139235550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_108334.known	chr5	+	1522	7	FSM	ENSMUSG00000036817.15	ENSMUST00000100517.10	1522	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	372.028971392761	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAATATTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	139186421	139214095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139213287
transcript_108339.known	chr5	+	2168	6	FSM	ENSMUSG00000036817.15	ENSMUST00000142473.8	2168	6	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_1	167.541039748475	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAAATATTCTTCT	NA	False	NA	NA	False	NA	NA	NA	139186421	139214094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460
transcript_108346.known	chr5	+	2107	9	FSM	ENSMUSG00000025858.13	ENSMUST00000026976.12	2107	9	0	0	0	0	multi-exon	FALSE	canonical	3	1098	junction_8	59.685503893324	2116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTAGTCCTTTCTG	NA	False	NA	NA	False	AATAAA	-15	NA	139238078	139255806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139238375_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
transcript_108349.known	chr5	+	1180	9	FSM	ENSMUSG00000025858.13	ENSMUST00000110878.2	1180	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	399.478546826985	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTCTCTGCTTCCTTG	NA	False	NA	NA	False	AATAAA	-31	NA	139239265	139255084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139239357_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
transcript_108355.nic	chr5	+	2319	8	NIC	ENSMUSG00000025858.13	novel	2107	9	NA	NA	-130	0	intron_retention	FALSE	canonical	3	1098	junction_7	56.9679465908287	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTAGTCCTTTCTG	NA	False	NA	NA	False	AATAAA	-15	NA	139237948	139255806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_139238375_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139253058_139253157_139253231_139254735
transcript_10836.known	chr10	+	979	5	FSM	ENSMUSG00000020307.16	ENSMUST00000218964.2	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_4	778.055749930556	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCTGAGAGAATCACCT	NA	False	NA	17	True	AATAAA	-17	NA	79518307	79524228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523686
transcript_108364.known	chr5	+	835	6	FSM	ENSMUSG00000025858.13	ENSMUST00000130326.8	835	6	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	441.560686655866	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGTGAGTCCATCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	139238124	139252896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139238375_139248235_139248315_139248627_139248707_139249233_139249384_139251381_139251521_139252758
transcript_108365.known	chr5	-	2557	11	FSM	ENSMUSG00000056413.17	ENSMUST00000110865.2	2557	11	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_10	23.6296424010183	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCTGTGTGTTTATGGCT	4958	False	NA	-5	True	AATAAA	-20	NA	139311377	139257630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139258832_139259089_139259319_139259489_139259562_139260201_139260265_139260483_139260568_139265263_139265411_139266459_139266573_139278890_139278974_139288058_139288151_139293496_139293628_139311035
transcript_108369.known	chr5	-	2461	3	FSM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	1.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGCGTTGAGTAGTGTT	NA	False	NA	NA	False	TATAAA	-19	NA	139330988	139321943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139324131_139328317_139328430_139330826
transcript_108372.known	chr5	-	1429	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446257	139345493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
transcript_108373.known	chr5	-	2030	4	FSM	ENSMUSG00000053553.12	ENSMUST00000198474.2	2030	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	29.698484809835	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446282	139345493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139347144_139349727_139349919_139441171_139441302_139446223
transcript_108374.known	chr5	-	686	3	FSM	ENSMUSG00000053553.12	ENSMUST00000196267.2	686	3	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_2	36	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGTGTTTTGTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	139446266	139349405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139349919_139441171_139441302_139446223
transcript_108378.known	chr5	+	4157	2	FSM	ENSMUSG00000044197.9	ENSMUST00000051293.8	4157	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTTTCCCTTTATGTTT	1355	False	NA	5	True	ATTAAA	-18	NA	139366335	139382170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139366499_139378176
transcript_108379.known	chr5	-	3169	7	FSM	ENSMUSG00000053581.14	ENSMUST00000079996.13	3169	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_6	14.7271480229163	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTAGACAGTTTCTCTA	8677	False	NA	-6	True	AATAAA	-24	NA	139470304	139456965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470020
transcript_108380.known	chr5	-	3121	7	FSM	ENSMUSG00000053581.14	ENSMUST00000110851.8	3121	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	12.5532200384337	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATTCTAGACAGTTT	8709	False	NA	-11	True	AATAAA	-19	NA	139470272	139456970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470031
transcript_108381.nic	chr5	-	2034	3	ISM	ENSMUSG00000053581.14	ENSMUST00000143889.2	433	4	-53	1262	-17	-1262	5prime_fragment	FALSE	canonical	3	27	junction_2	20	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTGGCTCAAAAAACAAATA	8745	False	NA	NA	False	NA	NA	NA	139470236	139466093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_139467816_139468456_139468553_139470020
transcript_108382.nic	chr5	-	2024	3	ISM	ENSMUSG00000053581.14	ENSMUST00000110851.8	3121	7	35	9123	-18	-1262	5prime_fragment	FALSE	canonical	3	34	junction_2	16.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTGGCTCAAAAAACAAATA	8744	False	NA	NA	False	NA	NA	NA	139470237	139466093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_139467816_139468456_139468553_139470031
transcript_108383.known	chr5	-	3346	17	FSM	ENSMUSG00000036718.18	ENSMUST00000044642.14	3346	17	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_8	4.83476990145343	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGTTGCCTGTGTGTGTC	NA	False	NA	-4	True	AATAAA	-15	NA	139722091	139692450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139692665_139692816_139692864_139694640_139694756_139695270_139695345_139695445_139695537_139695957_139696082_139696156_139696222_139696337_139696488_139697308_139697467_139698041_139698136_139698895_139699153_139701460_139702601_139703193_139703310_139703977_139704169_139704998_139705141_139707702_139707752_139721772
transcript_108385.known	chr5	-	7102	47	FSM	ENSMUSG00000029547.11	ENSMUST00000072607.9	7102	47	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	49.3038493955329	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTGTCCTGTGTTGT	NA	False	NA	-9	True	AATGAA	-19	NA	139761428	139737036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742198_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562_139748743_139749759_139749910_139749982_139750163_139750422_139750553_139750798_139750997_139751991_139752053_139752184_139752277_139753157_139753255_139753475_139753634_139754173_139754252_139754618_139754740_139755053_139755163_139755817_139755995_139756804_139756947_139757044_139757191_139757291_139757479_139757570_139757677_139757771_139757932_139758110_139758249_139758352_139758550_139760042_139760334_139761086
transcript_108387.known	chr5	-	2039	9	FSM	ENSMUSG00000036687.14	ENSMUST00000044002.10	2039	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.92028643696715	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTTGGGCTTTCTGTTC	8475	False	NA	NA	False	GATAAA	-19	NA	139800038	139790706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139791497_139791936_139792132_139792659_139792830_139793374_139793467_139793548_139793625_139793711_139793803_139794111_139794278_139798719_139798948_139799807
transcript_108390.nnic	chr5	+	2789	4	NNC	ENSMUSG00000018143.11	novel	2849	3	NA	NA	-48	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	11.1455023315337	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCTGGTGTCTGGATGG	NA	False	NA	13	True	AATAAA	-18	NA	139777219	139788405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_139777468_139784893_139784974_139785839_139787701_139787805
transcript_108392.nnic	chr5	+	2790	4	NNC	ENSMUSG00000018143.11	novel	2849	3	NA	NA	-48	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	11.1455023315337	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTGGTGTCTGGATGGT	NA	False	NA	14	True	AATAAA	-19	NA	139777219	139788406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_139777468_139784893_139784974_139785839_139787719_139787823
transcript_108393.nnic	chr5	+	2788	4	NNC	ENSMUSG00000018143.11	novel	2849	3	NA	NA	-48	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	11.1455023315337	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCTGGTGTCTGGATGG	NA	False	NA	13	True	AATAAA	-18	NA	139777219	139788405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_139777468_139784893_139784974_139785839_139787746_139787851
transcript_108394.known	chr5	+	2849	3	FSM	ENSMUSG00000018143.11	ENSMUST00000018287.10	2849	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	1.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTGTCTGGATGGTGC	NA	False	NA	16	True	AATAAA	-21	NA	139777267	139788408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_139777468_139784893_139784974_139785839
transcript_108395.known	chr5	-	883	3	FSM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_2	27	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAGACATCATGGGCAT	7313	False	NA	-12	True	AATAAA	-31	NA	139812640	139809346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139809829_139811882_139812120_139812476
transcript_108396.known	chr5	-	733	3	FSM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	75.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGGCCTTCTCAGTG	7355	False	NA	-33	True	AATAAA	-10	NA	139812598	139809367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139809829_139811882_139812120_139812563
transcript_108405.known	chr5	-	2640	18	FSM	ENSMUSG00000029554.16	ENSMUST00000031534.9	2640	18	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_17	17.902078903461	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTCCAAGGCTCCAAGC	NA	False	NA	1	True	AATAAA	-27	NA	140307307	139994443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
transcript_10841.known	chr10	+	799	4	FSM	ENSMUSG00000020307.16	ENSMUST00000219791.2	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	942.677510545833	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGGGGACCGACTGCCT	NA	False	NA	NA	False	NA	NA	NA	79518237	79524109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79518425_79520651_79520739_79520838_79520937_79523682
transcript_108411.nnic	chr5	-	2522	17	NIC	ENSMUSG00000029554.16	novel	2640	18	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_6	48.426329357076	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGATTGTGTCCAAGGCTC	NA	False	NA	-4	True	AATAAA	-22	NA	140307335	139994448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
transcript_108413.known	chr5	-	2547	17	FSM	ENSMUSG00000029554.16	ENSMUST00000110829.7	2547	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	52.7873090808766	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTCCAAGGCTCCAAGC	NA	False	NA	1	True	AATAAA	-27	NA	140307305	139994443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
transcript_108422.known	chr5	+	954	5	FSM	ENSMUSG00000036639.13	ENSMUST00000050205.12	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	49.2461927462418	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317663	140323892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321214_140323347
transcript_108426.known	chr5	+	952	4	FSM	ENSMUSG00000036639.13	ENSMUST00000071881.10	952	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	90.7450641449256	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317614	140323892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140317711_140320209_140320375_140321067_140321214_140323347
transcript_108428.known	chr5	-	1443	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	12	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTACTTGTCTGTTT	3901	False	NA	-5	True	AAAACA	-37	NA	140317653	140313428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_140314536_140316734_140317025_140317607
transcript_10843.known	chr10	+	914	4	FSM	ENSMUSG00000020307.16	ENSMUST00000220133.2	914	4	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_3	897.911032464922	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGACTCTGGCACCGAAG	NA	False	NA	-37	True	NA	NA	NA	79518136	79523865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79518425_79520651_79520739_79520838_79521202_79523689
transcript_108430.known	chr5	+	744	5	FSM	ENSMUSG00000036639.13	ENSMUST00000110827.8	744	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	84.8071341338687	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTGTGGCACCTTTAA	NA	False	NA	53	True	NA	NA	NA	140317708	140323696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140317742_140318177_140318229_140320209_140320375_140321067_140321214_140323347
transcript_108438.known	chr5	-	2627	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	18.7160359050735	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGGTTTCCACGCTGCA	7720	False	NA	-12	True	AATAAA	-14	NA	140375017	140326057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
transcript_108453.known	chr5	-	2547	10	FSM	ENSMUSG00000029560.13	ENSMUST00000196130.5	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_8	16.9144543344472	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTTTCCACGCTGCAGT	NA	False	NA	-10	True	AATAAA	-16	NA	140346170	140326055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946
transcript_108456.known	chr5	+	2945	19	FSM	ENSMUSG00000056076.14	ENSMUST00000100507.8	2945	19	0	0	0	0	multi-exon	TRUE	canonical	3	2428	junction_3	310.145868707844	1414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGTCCTGATCTCTT	NA	False	NA	15	True	AATAAA	-16	NA	140405082	140429115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418890_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426867_140427491_140427570_140427878_140427988_140428074_140428192_140428628
transcript_108469.known	chr5	+	766	2	FSM	ENSMUSG00000036599.11	ENSMUST00000124142.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGCACCAACTGGAAGCG	NA	False	NA	NA	False	NA	NA	NA	140491329	140509908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140491483_140509295
transcript_10847.nnic	chr10	+	3161	9	Fusion	ENSMUSG00000020307.16_ENSMUSG00000054206.3	novel	1287	5	NA	NA	13	0	intron_retention	FALSE	canonical	2	4	junction_5	939.378517957485	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTCTGCCTCTGGCTT	NA	False	NA	NA	False	AATAAA	-24	NA	79518041	79531095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr10_+_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682_79525300_79528654_79528815_79529957_79530097_79530184_79530452_79530820
transcript_108470.known	chr5	+	2331	2	FSM	ENSMUSG00000036599.11	ENSMUST00000043050.9	2331	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATATTTATATGTACG	NA	False	NA	NA	False	TTTAAA	-31	NA	140491304	140511479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140491452_140509295
transcript_108471.known	chr5	+	2305	8	FSM	ENSMUSG00000029570.6	ENSMUST00000031555.3	2305	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	5.13888735674427	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGGGGCCCTAGTCTTG	NA	False	NA	7	True	AATAAA	-18	NA	140593074	140601300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140593600_140597604_140597654_140598045_140598146_140598257_140598412_140598514_140598601_140598910_140599077_140599945_140600032_140600161
transcript_108472.known	chr5	-	4658	14	FSM	ENSMUSG00000036565.8	ENSMUST00000042661.8	4658	14	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	9.95255014746823	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTCTCTCTCTCTCTC	1276	False	NA	NA	False	AATAAA	-16	NA	140634786	140606332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_140609287_140612205_140612282_140612876_140613051_140615136_140615274_140615469_140615563_140617247_140617341_140617942_140617999_140619019_140619096_140619318_140619392_140620513_140620610_140620936_140621158_140621268_140621381_140621651_140621822_140634459
transcript_108473.nic	chr5	-	4449	24	NIC	ENSMUSG00000036555.15	novel	6037	23	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	8.47948709081224	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCCTTTGGCAGGTG	4420	False	NA	NA	False	AGTAAA	-18	NA	140688124	140649259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_140651249_140651762_140651964_140654776_140654876_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
transcript_108475.nic	chr5	-	2674	24	NIC	ENSMUSG00000036555.15	novel	6037	23	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	8.47948709081224	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACACCTCAGCCATCCAT	4420	False	NA	NA	False	NA	NA	NA	140688124	140651034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_140651249_140651762_140651964_140654776_140654876_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
transcript_108476.known	chr5	-	2494	23	FSM	ENSMUSG00000036555.15	ENSMUST00000077890.12	2494	23	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	9.27807332521678	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACACCTCAGCCATCCAT	4450	False	NA	NA	False	NA	NA	NA	140688094	140651034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_140651249_140651762_140651964_140654776_140654861_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140679169_140679299_140682762_140682809_140685439_140685488_140687936
transcript_108477.known	chr5	-	6037	23	FSM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	7.69995170103989	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATTGCAAATTCCTCCTT	4411	False	NA	NA	False	AATAAA	-24	NA	140688133	140647581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_140651249_140651762_140651964_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
transcript_108478.nic	chr5	-	4215	22	NIC	ENSMUSG00000036555.15	novel	6037	23	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	8.36660026534076	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCCTTTGGCAGGTG	4420	False	NA	NA	False	AGTAAA	-18	NA	140688124	140649259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_140651249_140651762_140651964_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140679169_140679299_140682762_140682809_140685439_140685488_140687936
transcript_10848.known	chr10	+	1261	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	0	0	0	0	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79540324	79547803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
transcript_108482.nic	chr5	-	2533	21	ISM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	9	8267	9	-3936	5prime_fragment	FALSE	canonical	3	15	junction_8	7.13161973187017	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCTAGCTTATTGATAGAA	4420	False	NA	NA	False	ATTAAA	-19	NA	140688124	140655848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
transcript_108489.known	chr5	+	3333	14	FSM	ENSMUSG00000000148.18	ENSMUST00000041588.13	3333	14	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	10.6471097836719	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTTCTCTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	140690765	140705134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
transcript_108493.nic	chr5	+	3369	14	NIC	ENSMUSG00000000148.18	novel	3333	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_5	24.0315374643282	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTTCTCTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	140690753	140705134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698657_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
transcript_108498.known	chr5	+	3431	14	FSM	ENSMUSG00000000148.18	ENSMUST00000100505.3	3431	14	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	24.1966793164027	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTTCTCTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	140690820	140705134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140690984_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
transcript_108502.known	chr5	+	3854	13	FSM	ENSMUSG00000000148.18	ENSMUST00000110806.8	3854	13	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	11.0412735779086	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAACTGTGGGTCCTGTA	NA	False	NA	NA	False	NA	NA	NA	140690777	140705085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898
transcript_108507.known	chr5	+	3023	13	FSM	ENSMUSG00000000148.18	ENSMUST00000153440.8	3023	13	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_6	25.4114748795806	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGGTAGTACTGATGT	NA	False	NA	NA	False	ATTAAA	-22	NA	140690777	140704928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
transcript_108525.known	chr5	+	4037	7	FSM	ENSMUSG00000050022.17	ENSMUST00000120630.3	4037	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.16333199893227	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGGCTTCATCAACTAT	NA	False	NA	NA	False	NA	NA	NA	140721280	140740446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_140721394_140726819_140727343_140729771_140729940_140733897_140734027_140734369_140734543_140734909_140735087_140737692
transcript_108526.known	chr5	-	3416	4	FSM	ENSMUSG00000000149.11	ENSMUST00000000153.9	3416	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	26.9938264547038	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCTTCATGCCTAGCAT	NA	False	NA	NA	False	AATAAA	-27	NA	140816186	140744162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_140746874_140748344_140748396_140771151_140771368_140815748
transcript_108528.known	chr5	-	1299	6	FSM	ENSMUSG00000036526.9	ENSMUST00000196169.2	1299	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	3.77359245282264	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGTTCTTATCCCACAG	NA	False	NA	NA	False	ATTAAA	-21	NA	140867960	140858746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_140859285_140860095_140860212_140862151_140862277_140863717_140863898_140866052_140866189_140867756
transcript_10853.known	chr10	+	3195	8	FSM	ENSMUSG00000020331.10	ENSMUST00000099513.8	3195	8	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	3.18157963590287	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGAGCGCAGCGTCTCATT	NA	False	NA	24	True	AATAAA	-14	NA	79552467	79571942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79553054_79560221_79560646_79561980_79562143_79564726_79564946_79566680_79566828_79569504_79569746_79569896_79570062_79570691
transcript_108530.known	chr5	+	7439	9	FSM	ENSMUSG00000056493.10	ENSMUST00000072837.7	7439	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	5.8309518948453	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCCAAGGGTATGAGTG	NA	False	NA	12	True	AATAAA	-19	NA	142387254	142447766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_142387797_142420895_142421082_142434441_142434599_142435995_142436143_142437193_142437388_142439263_142439431_142439514_142439800_142441107_142441333_142442230
transcript_108532.nic	chr5	+	2113	2	ISM	ENSMUSG00000056493.10	ENSMUST00000072837.7	7439	9	-20	25320	-17	17071	5prime_fragment	FALSE	canonical	3	31	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGACTTGGCACCAGGA	NA	False	NA	NA	False	NA	NA	NA	142387234	142422446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_142387797_142420895
transcript_108534.known	chr5	+	3689	17	FSM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_8	14.9769353924626	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGAGGGCGCGGTGTCTT	8700	False	NA	4	True	AATAAA	-14	NA	142449808	142464465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
transcript_108535.known	chr5	+	2965	17	FSM	ENSMUSG00000039623.14	ENSMUST00000196055.2	2965	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	25.1941678519057	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTGCCTGGCTCAGTGA	8720	False	NA	NA	False	NA	NA	NA	142449828	142463809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460176_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
transcript_108538.nnic	chr5	+	2759	17	NNC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	23.9736183126369	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAGTGGTGGCACATGC	8677	False	NA	14	True	AATAAA	-19	NA	142449785	142463557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456193_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
transcript_108539.nic	chr5	+	2933	16	ISM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	-48	908	7	0	intron_retention	FALSE	canonical	3	53	junction_8	14.7939927748469	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAGTGGTGGCACATGC	8652	False	NA	14	True	AATAAA	-19	NA	142449760	142463557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651
transcript_108542.nic	chr5	+	3143	16	NIC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	-2	0	intron_retention	FALSE	canonical	3	53	junction_8	14.5134420452214	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAGTGGTGGCACATGC	8698	False	NA	14	True	AATAAA	-19	NA	142449806	142463557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
transcript_108543.nic	chr5	+	3137	16	NIC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	22	0	intron_retention	FALSE	canonical	3	53	junction_8	15.4324333790883	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAGTGGTGGCACATGC	8667	False	NA	14	True	AATAAA	-19	NA	142449775	142463557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
transcript_108548.nic	chr5	+	2868	16	NIC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	-11	0	intron_retention	FALSE	canonical	3	63	junction_7	13.0632648633061	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAGTGGTGGCACATGC	8679	False	NA	14	True	AATAAA	-19	NA	142449787	142463557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
transcript_10856.nic	chr10	-	3933	22	NIC	ENSMUSG00000020329.13	novel	3755	21	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_19	44.9978583516574	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAGACGCTGCGCTCGG	4672	False	NA	-7	True	NA	NA	NA	79582450	79571963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79579712_79579854_79581507_79581607_79582298
transcript_108572.known	chr5	-	3700	15	FSM	ENSMUSG00000029576.18	ENSMUST00000063635.15	3700	15	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	8.41069532906569	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGGATGTAGGATCTGCA	NA	False	NA	-5	True	AATAAA	-21	NA	142536853	142470593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_142471004_142471167_142471308_142471609_142471747_142472509_142472862_142473201_142473393_142474157_142474309_142479982_142480156_142480490_142480729_142481080_142481194_142483592_142483754_142489667_142489706_142492213_142492844_142493824_142494073_142529159_142529759_142536734
transcript_108573.known	chr5	-	3963	14	FSM	ENSMUSG00000029576.18	ENSMUST00000139824.2	3963	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	8.50687156981492	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTGGGGATGTAGGATCT	NA	False	NA	-8	True	AATAAA	-18	NA	142536817	142470596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_142471004_142471167_142471747_142472509_142472862_142473201_142473393_142474157_142474309_142479982_142480156_142480490_142480729_142481080_142481194_142483592_142483754_142489667_142489706_142492213_142492844_142493824_142494073_142529159_142529759_142536734
transcript_108576.known	chr5	-	3317	7	FSM	ENSMUSG00000039533.9	ENSMUST00000037048.9	3317	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATTGAGATCATATCA	NA	False	NA	NA	False	NA	NA	NA	142594555	142548112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_142550697_142553619_142553690_142555220_142555323_142560551_142560627_142560940_142561102_142565935_142566018_142594312
transcript_108585.known	chr5	+	1959	12	FSM	ENSMUSG00000029578.16	ENSMUST00000110778.2	1959	12	0	0	0	0	multi-exon	FALSE	canonical	2	44	junction_11	110.780253036405	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGGCCATTTTCCCTC	NA	False	NA	-32	True	NA	NA	NA	142615347	142653242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_142615588_142623956_142624040_142641602_142641773_142643946_142644044_142644819_142644918_142645287_142645381_142646779_142646851_142648789_142648898_142650079_142650245_142651177_142651286_142651848_142651947_142652614
transcript_108588.known	chr5	+	5171	12	FSM	ENSMUSG00000029578.16	ENSMUST00000036872.16	5171	12	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_9	31.2155926283724	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAGGGGACTGTCCTGA	NA	False	NA	NA	False	ATTAAA	-15	NA	142615296	142656343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_142615588_142623956_142624040_142641602_142641773_142643946_142644044_142644819_142644918_142645287_142645381_142646779_142646851_142648789_142648898_142650079_142650245_142651177_142651286_142651848_142652007_142652614
transcript_108606.known	chr5	+	3244	6	FSM	ENSMUSG00000029578.16	ENSMUST00000153936.2	3244	6	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_3	17.3389734413546	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAAAAATTAG	NA	False	NA	NA	False	NA	NA	NA	142615345	142648464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_142615588_142623956_142624040_142641602_142641773_142643946_142644918_142645287_142645381_142646779
transcript_108613.known	chr5	+	2789	11	FSM	ENSMUSG00000050822.12	ENSMUST00000058418.8	2789	11	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_7	3.13847096529504	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGCTGTCCTGAGGAAGT	NA	False	NA	NA	False	ATTAAA	-17	NA	142687855	142708245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_142688047_142691110_142691291_142697717_142697850_142698641_142698756_142699765_142699895_142700800_142700876_142703346_142703592_142704211_142704354_142704465_142704654_142705711_142705953_142707093
transcript_108616.known	chr5	-	6487	16	FSM	ENSMUSG00000039477.17	ENSMUST00000151477.8	6487	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_8	42.8710728684143	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGCCTCGTTTCTCTT	NA	False	NA	NA	False	ATTAAA	-26	NA	142803417	142740543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_142741415_142745465_142745827_142748744_142748917_142750523_142750653_142750805_142750943_142751667_142751844_142757059_142758059_142759373_142759801_142760963_142761155_142761583_142761731_142761930_142762137_142762400_142762498_142772888_142774515_142775818_142775945_142800769_142801201_142803026
transcript_10862.known	chr10	-	3755	21	FSM	ENSMUSG00000020329.13	ENSMUST00000020580.13	3755	21	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_16	17.3118456555042	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAGACGCTGCGCTCGG	4709	False	NA	-7	True	NA	NA	NA	79582413	79571963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79581507_79581607_79582298
transcript_108635.known	chr5	-	2831	5	FSM	ENSMUSG00000066640.12	ENSMUST00000035985.8	2831	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	6.28490254498827	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTCTCCAGGATGTT	NA	False	NA	-2	True	NA	NA	NA	142880993	142857543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_142858276_142864412_142864632_142871293_142872838_142874423_142874631_142880864
transcript_108650.known	chr5	-	1920	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	0	0	0	0	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	4292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	8889	False	NA	-1	True	AATAAA	-27	NA	142892509	142888869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
transcript_10866.known	chr10	-	3535	20	FSM	ENSMUSG00000020329.13	ENSMUST00000159016.8	3535	20	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_12	36.3934333975215	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAGACGCTGCGCTCGG	4707	False	NA	-7	True	NA	NA	NA	79582415	79571963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79581507_79581607_79582298
transcript_108664.known	chr5	-	863	2	FSM	ENSMUSG00000029580.15	ENSMUST00000164765.2	863	2	0	0	0	0	multi-exon	FALSE	canonical	3	4070	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTCAGATCTATCCATA	8949	False	NA	NA	False	NA	NA	NA	142892449	142890627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_142891448_142892406
transcript_108672.known	chr5	+	2675	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	0	0	0	0	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	7827	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTGTGTGTCTCAGGGG	NA	False	NA	18	True	AATAAA	-18	NA	142946097	142958940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
transcript_108688.known	chr5	-	4474	17	FSM	ENSMUSG00000045078.13	ENSMUST00000053498.13	4474	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_14	28.015550927119	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTCTGTTTGTCCC	6130	False	NA	-1	True	AATAAA	-16	NA	143098749	142976647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084261_143098653
transcript_108689.nnic	chr5	-	582	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3423	False	NA	0	True	AATAAA	-19	NA	143151560	143150533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_143150848_143151184_143151305_143151412
transcript_108690.known	chr5	-	520	3	FSM	ENSMUSG00000104529.5	ENSMUST00000198334.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	7.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3477	False	NA	0	True	AATAAA	-19	NA	143151506	143150533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143150848_143151184_143151305_143151420
transcript_108691.nnic	chr5	-	658	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-54	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTGTGTCGCCTCCTA	3423	False	NA	-3	True	AATAAA	-16	NA	143151560	143150536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_143150848_143151105_143151305_143151412
transcript_108692.nnic	chr5	-	619	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-23	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	8	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTGTGTCGCCTCCTA	3454	False	NA	-3	True	AATAAA	-16	NA	143151529	143150536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_143150848_143151105_143151305_143151420
transcript_108693.known	chr5	-	588	2	FSM	ENSMUSG00000104529.5	ENSMUST00000200314.5	588	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3525	False	NA	0	True	AATAAA	-19	NA	143151458	143150533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143150848_143151184
transcript_108695.known	chr5	-	3335	5	FSM	ENSMUSG00000061898.11	ENSMUST00000049861.11	3335	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	6.20483682299543	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGTTTATGTGTTGTGT	NA	False	NA	NA	False	GATAAA	-3	NA	143166485	143157940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165298_143166303
transcript_108696.known	chr5	-	3480	5	FSM	ENSMUSG00000061898.11	ENSMUST00000165318.4	3480	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	15.5724115023974	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGTTTATGTGTTGTGT	NA	False	NA	NA	False	GATAAA	-3	NA	143166530	143157940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165398_143166303
transcript_108698.known	chr5	+	5265	5	FSM	ENSMUSG00000029587.17	ENSMUST00000032591.15	5265	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	7.11951543294907	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTGAAATGATATCTAC	NA	False	NA	NA	False	NA	NA	NA	143220928	143234589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143221135_143222008_143222072_143225708_143225836_143226074_143226171_143229816
transcript_108701.known	chr5	+	4384	5	FSM	ENSMUSG00000029587.17	ENSMUST00000075916.8	4384	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	16.7835484924971	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTATGCTTCCTTAAGC	NA	False	NA	19	True	AATGAA	-11	NA	143221001	143233711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143221135_143222008_143222072_143225708_143225906_143226074_143226171_143229816
transcript_108702.known	chr5	+	4294	4	FSM	ENSMUSG00000029587.17	ENSMUST00000077485.11	4294	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	16.391054470859	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACAATTGTGTATGCTT	NA	False	NA	11	True	AATGAA	-3	NA	143220917	143233703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143221135_143222008_143222072_143225708_143225836_143229816
transcript_108706.nnic	chr5	-	2319	6	NNC	ENSMUSG00000039244.11	novel	2208	6	NA	NA	-64	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	52.428999608995	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGGCATTGTGGGGTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	143301179	143286963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_143287759_143292520_143292561_143293370_143293896_143297465_143297632_143299932_143300155_143300608
transcript_108707.known	chr5	-	2208	6	FSM	ENSMUSG00000039244.11	ENSMUST00000046418.3	2208	6	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_3	6.98569967862919	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCATTGTGGGGTTTTCA	NA	False	NA	-5	True	AATAAA	-19	NA	143301115	143286961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143287759_143292520_143292561_143293370_143293896_143297465_143297632_143299932_143300155_143300657
transcript_108714.known	chr5	-	944	4	FSM	ENSMUSG00000039244.11	ENSMUST00000162332.2	944	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	68.1485305947401	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	143301095	143294057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143294176_143297465_143297632_143299932_143300155_143300657
transcript_108724.nic	chr5	-	1567	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	94.7198995723707	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5285	False	NA	-14	True	AATACA	-25	NA	143314995	143302244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314920
transcript_10873.known	chr10	-	3935	19	FSM	ENSMUSG00000020329.13	ENSMUST00000159082.8	3935	19	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_14	18.0387100904803	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGACGCTGCGCTCGGCG	4715	False	NA	-5	True	NA	NA	NA	79582407	79571961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79581507_79581607_79582298
transcript_108730.nic	chr5	-	1397	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_7	84.1580146425249	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314853
transcript_108731.known	chr5	-	1341	8	FSM	ENSMUSG00000001844.11	ENSMUST00000159813.8	1341	8	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_2	78.3753397284568	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5305	False	NA	-14	True	AATACA	-25	NA	143314975	143302244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143302588_143305985_143306231_143307509_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
transcript_108735.nic	chr5	-	1444	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	86.0744812736656	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5276	False	NA	-14	True	AATACA	-25	NA	143315004	143302244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145_143314326_143314920
transcript_108743.known	chr5	+	1829	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	562	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTATGGTCTTTTCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	143389592	143407656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
transcript_108746.known	chr5	+	4651	15	FSM	ENSMUSG00000039206.14	ENSMUST00000045593.12	4651	15	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	5.5272977491866	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACAAAAAATCTC	NA	False	NA	NA	False	AGTAAA	-38	NA	143450338	143491697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143450532_143452707_143452860_143458701_143458874_143460367_143460627_143464168_143464292_143467384_143467513_143469980_143470108_143472902_143472987_143475681_143475760_143479912_143479994_143480296_143480425_143486724_143486794_143486879_143486953_143488616_143488865_143488961
transcript_108751.known	chr5	+	2278	3	FSM	ENSMUSG00000083012.10	ENSMUST00000196487.2	2278	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	46.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCGTATGTTCTCCTTAT	NA	False	NA	28	True	AATAAA	-41	NA	143534515	143550282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143534890_143537163_143537297_143548511
transcript_108752.known	chr5	+	2202	2	FSM	ENSMUSG00000118332.2	ENSMUST00000119488.2	2202	2	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	0	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTATGTTCTCCTTATCTTT	NA	False	NA	32	True	AATAAA	-45	NA	143534462	143550286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143534890_143548511
transcript_108753.known	chr5	+	919	2	FSM	ENSMUSG00000118332.2	ENSMUST00000118121.2	919	2	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCGGTGTTTTCCTAATG	NA	False	NA	9	True	AATAAA	-14	NA	143534500	143537693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143534890_143537163
transcript_108755.known	chr5	+	3738	13	FSM	ENSMUSG00000018001.19	ENSMUST00000116456.10	3738	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_12	7.06468132488807	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCTAAGACTCAATTCTT	NA	False	NA	5	True	AATAAA	-22	NA	143608201	143696005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143683470_143683552_143687073_143687187_143687351_143687501_143688568_143688681_143692838_143692916_143692993_143693066_143693149_143693305_143693587
transcript_108757.known	chr5	-	5151	18	FSM	ENSMUSG00000051306.8	ENSMUST00000053287.6	5151	18	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	13.3323240679149	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCGTCTCAGTTTTACTC	NA	False	NA	NA	False	ATTAAA	-1	NA	143718035	143696079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143697098_143697704_143697744_143699290_143699593_143700356_143701836_143702331_143702427_143702528_143703237_143703678_143703833_143705248_143705350_143705481_143705623_143706031_143706144_143706902_143706986_143707387_143707459_143708041_143708110_143708863_143708967_143709649_143709761_143712243_143712445_143713534_143713782_143717917
transcript_108758.nic	chr5	-	3814	15	ISM	ENSMUSG00000051306.8	ENSMUST00000053287.6	5151	18	-58	4313	-58	-870	5prime_fragment	FALSE	canonical	3	67	junction_1	14.0138415540508	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGTCCAAAGATAAACACC	NA	False	NA	20	True	AAAAAG	-15	NA	143718093	143700392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_143701836_143702331_143702427_143702528_143703237_143703678_143703833_143705248_143705350_143705481_143705623_143706031_143706144_143706902_143706986_143707387_143707459_143708041_143708110_143708863_143708967_143709649_143709761_143712243_143712445_143713534_143713782_143717917
transcript_108760.nic	chr5	-	1694	13	ISM	ENSMUSG00000051306.8	ENSMUST00000053287.6	5151	18	-6	6979	-6	-900	5prime_fragment	FALSE	canonical	3	74	junction_8	12.512216252749	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCATCAGTATTCACAAC	NA	False	NA	NA	False	AAGAAA	-8	NA	143718041	143703058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_143703237_143703678_143703833_143705248_143705350_143705481_143705623_143706031_143706144_143706902_143706986_143707387_143707459_143708041_143708110_143708863_143708967_143709649_143709761_143712243_143712445_143713534_143713782_143717917
transcript_108761.known	chr5	+	4325	15	FSM	ENSMUSG00000029613.16	ENSMUST00000100487.6	4325	15	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	19.8185647866863	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGACACTGTTGGTGTT	NA	False	NA	NA	False	AATAAA	-31	NA	143803542	143841069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602
transcript_108767.known	chr5	-	1185	4	FSM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	88.5023540176569	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846657	143839521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846398
transcript_108768.known	chr5	-	1073	4	FSM	ENSMUSG00000029610.14	ENSMUST00000100483.3	1073	4	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	226.993881464286	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846665	143839521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846518
transcript_108770.known	chr5	+	1654	6	FSM	ENSMUSG00000029613.16	ENSMUST00000140013.8	1654	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	17.6249822694946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	143803585	143817297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252
transcript_108773.nic	chr5	+	2779	14	NIC	ENSMUSG00000079109.12	novel	5482	15	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	28.7468032696655	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCATGTCTGCAGTTAC	NA	False	NA	NA	False	AAAAAG	-17	NA	143846818	143868260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_143846898_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
transcript_108778.known	chr5	+	955	4	FSM	ENSMUSG00000079109.12	ENSMUST00000154781.8	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	13.490737563232	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAACAAAGCA	NA	False	NA	NA	False	AATGAA	-5	NA	143846842	143851109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436
transcript_108780.known	chr5	-	1769	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCCTGTTGAGTCCT	NA	False	NA	1	True	AATAAA	-22	NA	143951671	143924726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
transcript_108787.nic	chr5	-	298	2	ISM	ENSMUSG00000029617.11	ENSMUST00000197555.2	935	5	-64	3815	-64	-542	5prime_fragment	FALSE	canonical	3	916	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAAATGTTGGATTATGT	NA	False	NA	NA	False	AATAAA	-44	NA	143951759	143949854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_143949910_143951516
transcript_108788.known	chr5	+	8114	14	FSM	ENSMUSG00000038970.8	ENSMUST00000041804.8	8114	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	10.2628185108664	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTTGCTACATTTACT	NA	False	NA	NA	False	AATAAA	-23	NA	144037253	144125022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_144037595_144066170_144066296_144070953_144071099_144080343_144080418_144084413_144084533_144085095_144085184_144093678_144093813_144101423_144101509_144103115_144103238_144108554_144108705_144110426_144113296_144119554_144119688_144119999_144120240_144121533
transcript_108791.nic	chr5	+	2175	3	ISM	ENSMUSG00000038970.8	ENSMUST00000041804.8	8114	14	-93	52453	-93	-52453	5prime_fragment	FALSE	canonical	3	59	junction_1	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGCTACAGAGAAGGTAA	NA	False	NA	NA	False	NA	NA	NA	144037160	144072569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_144037595_144066170_144066296_144070953
transcript_108792.known	chr5	+	3494	2	FSM	ENSMUSG00000052271.8	ENSMUST00000060747.8	3494	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTGTGGTATAAATTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	144127103	144131259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_144127177_144127838
transcript_108794.known	chr5	-	5106	25	FSM	ENSMUSG00000066621.13	ENSMUST00000085701.7	5106	25	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_17	9.68236871271121	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGACAAGATTTTTATT	NA	False	NA	-6	True	AATAAA	-17	NA	144160433	144131259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062_144151238_144153070_144153197_144153720_144153844_144154043_144154227_144155331_144155567_144160312
transcript_108795.nnic	chr5	-	4080	25	NNC	ENSMUSG00000066621.13	novel	5106	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_22	17.5315192344151	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	144160433	144132168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062_144151238_144153070_144153197_144153720_144153844_144154160_144154227_144155331_144155567_144160312
transcript_108798.known	chr5	-	4329	24	FSM	ENSMUSG00000066621.13	ENSMUST00000153103.8	4329	24	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_17	9.50793122312458	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	144160365	144132168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062_144151238_144153070_144153197_144153720_144154227_144155331_144155567_144160312
transcript_1088.known	chr1	-	6546	41	FSM	ENSMUSG00000026116.12	ENSMUST00000027290.12	6546	41	0	0	0	0	multi-exon	TRUE	canonical	3	231	junction_29	35.4925256216009	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGTTTTGTTTTGCTTTT	7221	False	NA	2	True	AATAAA	-25	NA	36978608	36831271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
transcript_10880.known	chr10	-	1639	9	FSM	ENSMUSG00000035890.10	ENSMUST00000047203.9	1639	9	0	0	0	0	multi-exon	FALSE	canonical	3	909	junction_4	92.4302946819927	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGGTGTCCATGACTG	NA	False	NA	20	True	AATACA	-43	NA	79602786	79594348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79595071_79596624_79596741_79596822_79596917_79597263_79597334_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
transcript_108807.nic	chr5	-	2420	9	ISM	ENSMUSG00000066621.13	ENSMUST00000153103.8	4329	24	-68	14107	0	0	5prime_fragment	FALSE	canonical	3	63	junction_2	8.07774721070176	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACCACCACCAACAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	144160433	144146275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062_144151238_144153070_144153197_144153720_144154227_144155331_144155567_144160312
transcript_108809.known	chr5	-	493	2	FSM	ENSMUSG00000066621.13	ENSMUST00000136018.2	493	2	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTTCAAGGCCGAT	NA	False	NA	NA	False	NA	NA	NA	144160376	144155137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_144155567_144160312
transcript_108811.known	chr5	+	955	3	FSM	ENSMUSG00000047843.17	ENSMUST00000056578.7	955	3	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	16.5	701	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGCAGTCAAGGTAAG	1629	False	NA	3	True	ATTAAA	-16	NA	144192043	144201384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_144192330_144192619_144192723_144200818
transcript_108813.known	chr5	-	3247	14	FSM	ENSMUSG00000038859.8	ENSMUST00000055190.8	3247	14	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_13	4.28979799803037	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTGTAAGTGGTACC	NA	False	NA	-1	True	AATAAA	-17	NA	144294922	144201335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_144202843_144203417_144203456_144212582_144212776_144214454_144214527_144215337_144215549_144217629_144217778_144218799_144218968_144221253_144221407_144222267_144222406_144222884_144222957_144223059_144223122_144255738_144255826_144261366_144261443_144294600
transcript_108816.known	chr5	+	2536	5	FSM	ENSMUSG00000059991.8	ENSMUST00000071782.8	2536	5	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	16.768646337734	363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGCTTCTTGTTCTCTC	NA	False	NA	11	True	ATTAAA	-17	NA	144482711	144494288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_144483294_144484928_144485146_144490209_144490455_144492106_144492287_144492976
transcript_108818.known	chr5	-	2805	8	FSM	ENSMUSG00000043388.9	ENSMUST00000061446.8	2805	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	5.20204041600946	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGTGGCAAGAATATC	NA	False	NA	-15	True	AATAAA	-17	NA	144698459	144672724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_144674303_144674613_144674727_144680405_144680609_144685466_144685552_144687625_144687793_144689097_144689258_144692020_144692327_144698266
transcript_108820.nic	chr5	-	2491	6	ISM	ENSMUSG00000043388.9	ENSMUST00000061446.8	2805	8	9017	0	9017	0	3prime_fragment	TRUE	canonical	2	9	junction_3	3.3466401061363	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGTGGCAAGAATATC	NA	False	NA	-15	True	AATAAA	-17	NA	144689442	144672724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_144674303_144674613_144674727_144680405_144680609_144685466_144685552_144687625_144687793_144689097
transcript_108822.known	chr5	+	2621	12	FSM	ENSMUSG00000045482.17	ENSMUST00000136379.2	2621	12	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_10	7.89497172334371	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	144704901	144724717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_144705056_144707898_144708060_144708417_144708468_144713912_144714024_144714690_144714796_144716793_144716878_144718785_144718843_144719005_144719132_144720797_144720876_144721067_144722376_144723441_144723581_144724469
transcript_108824.known	chr5	-	2725	18	FSM	ENSMUSG00000038780.15	ENSMUST00000100461.7	2725	18	0	0	0	0	multi-exon	TRUE	canonical	3	98	junction_2	50.6104602342352	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCAGCCTCCTTGGCAC	NA	False	NA	-39	True	AATAAA	-16	NA	144902657	144815920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_144816267_144817434_144817511_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144829970_144830118_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
transcript_108829.nic	chr5	-	2620	17	NIC	ENSMUSG00000038780.15	novel	5343	18	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_9	67.2339374404772	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCAGCCTCCTTGGCAC	NA	False	NA	-39	True	AATAAA	-16	NA	144902690	144815920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_144816267_144817434_144817520_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
transcript_108830.nic	chr5	-	2032	13	ISM	ENSMUSG00000038780.15	ENSMUST00000100461.7	2725	18	-33	5315	-33	166	5prime_fragment	FALSE	canonical	3	239	junction_1	24.1504255771106	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGACTTGTGTTCTTTT	NA	False	NA	NA	False	AATGAA	-20	NA	144902690	144821235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144829970_144830118_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
transcript_108831.known	chr5	+	1685	11	FSM	ENSMUSG00000029621.15	ENSMUST00000127694.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	145.969209081916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGTGTTTTTTCTTTAT	NA	False	NA	17	True	ATTAAA	-18	NA	145020715	145045566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145039048_145039183_145041251_145041328_145041507_145041702_145043854_145043946_145045186
transcript_108833.known	chr5	+	1632	10	FSM	ENSMUSG00000029621.15	ENSMUST00000031625.15	1632	10	0	0	0	0	multi-exon	TRUE	canonical	3	332	junction_5	31.8084545015595	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	False	NA	22	True	ATTAAA	-23	NA	145020639	145045571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
transcript_108850.known	chr5	+	1394	10	FSM	ENSMUSG00000029622.17	ENSMUST00000196111.5	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	583.199688394301	3641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAAACAACC	8129	False	NA	-84	True	NA	NA	NA	145051121	145064883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062688_145062777_145063536_145063743_145064445_145064537_145064630
transcript_10887.nic	chr10	-	1751	8	NIC	ENSMUSG00000035890.10	novel	1639	9	NA	NA	-74	0	intron_retention	FALSE	canonical	3	909	junction_5	92.3283846509019	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCCATGGCTTGGCGTC	NA	False	NA	-7	True	AATACA	-16	NA	79602860	79594375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79595071_79596624_79596741_79596822_79596917_79597263_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
transcript_108884.known	chr5	+	3105	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCATGTCTTGTCTGGGT	8032	False	NA	NA	False	AATATA	-15	NA	145051024	145066509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
transcript_108895.known	chr5	-	2353	6	FSM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_5	28.7708185493566	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGATGCTTCTGGTTG	NA	False	NA	NA	False	ATTAAA	-18	NA	145077048	145065578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
transcript_108898.nic	chr5	-	745	5	ISM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	-5	2602	-5	0	5prime_fragment	FALSE	canonical	3	415	junction_4	32.0029295534018	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGGTAGGTCTGAGCCC	NA	False	NA	-6	True	AAGAAA	-15	NA	145077053	145068180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
transcript_10890.nic	chr10	-	1616	8	NIC	ENSMUSG00000035890.10	novel	1408	8	NA	NA	-74	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	357.615915273835	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCCATGGCTTGGCGTC	NA	False	NA	-7	True	AATACA	-16	NA	79602860	79594375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79595071_79596624_79596741_79596822_79596917_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
transcript_108904.known	chr5	-	448	2	FSM	ENSMUSG00000029623.15	ENSMUST00000148781.2	448	2	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCACACACACACACACACA	NA	False	NA	NA	False	NA	NA	NA	145076808	145073387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_145073804_145076776
transcript_108905.known	chr5	-	3087	9	FSM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	16.4350045634311	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGCGTCTCATATATA	NA	False	NA	2	True	AATAAA	-30	NA	145103918	145084323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_145085316_145088095_145088279_145088927_145089045_145091483_145092189_145095549_145095652_145096284_145096504_145097848_145097990_145101870_145102344_145103763
transcript_10891.known	chr10	-	1408	8	FSM	ENSMUSG00000035890.10	ENSMUST00000218770.2	1408	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	460.29023674288	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCCATGGCTTGGCGTC	NA	False	NA	-7	True	AATACA	-16	NA	79602775	79594375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79595071_79596624_79596741_79596822_79596917_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602709
transcript_108911.known	chr5	+	741	6	FSM	ENSMUSG00000038722.18	ENSMUST00000159018.8	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	311.754133894003	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	16	True	AATAAA	-17	NA	145077217	145084884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145077253_145078114_145078171_145079257_145079378_145081708_145081832_145083252_145083420_145084644
transcript_108913.known	chr5	+	867	6	FSM	ENSMUSG00000038722.18	ENSMUST00000162594.8	867	6	0	0	0	0	multi-exon	FALSE	canonical	3	705	junction_1	67.372397908936	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTTTTAAGAGTG	NA	False	NA	20	True	AATAAA	-21	NA	145077171	145084888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
transcript_108916.known	chr5	+	928	6	FSM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	298.93035978301	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCTACATTCTTTCTTTT	NA	False	NA	13	True	AATAAA	-14	NA	145077224	145084881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
transcript_108917.known	chr5	+	705	5	FSM	ENSMUSG00000038722.18	ENSMUST00000162308.8	705	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	349.672257263856	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	16	True	AATAAA	-17	NA	145077206	145084884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145083252_145083420_145084644
transcript_108927.known	chr5	+	1756	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160422.8	1756	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	266.097419631784	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	NA	False	NA	22	True	ATTAAA	-14	NA	145104056	145118850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115567_145115739_145117945
transcript_108929.known	chr5	+	1387	8	FSM	ENSMUSG00000029625.17	ENSMUST00000162244.8	1387	8	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_6	148.975001327096	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGGCGCCAGGCTCCCC	NA	False	NA	NA	False	NA	NA	NA	145104063	145118563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115642_145115739_145117945
transcript_108930.known	chr5	+	1713	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160629.8	1713	8	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	186.36939400129	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	False	NA	23	True	ATTAAA	-15	NA	145104022	145118851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115645_145115739_145117945
transcript_108935.known	chr5	-	607	5	FSM	ENSMUSG00000038690.16	ENSMUST00000162360.8	607	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	2943.81371480941	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	9969	False	NA	-10	True	AATAAA	-17	NA	145128402	145120515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125133_145128312
transcript_108936.known	chr5	-	955	4	FSM	ENSMUSG00000038690.16	ENSMUST00000161741.8	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	4948	junction_3	568.415341101909	1479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTGTAGTCATTGTTC	9499	False	NA	-2	True	AATAAA	-25	NA	145128872	145120507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145128312
transcript_108940.known	chr5	-	540	5	FSM	ENSMUSG00000038690.16	ENSMUST00000037056.9	540	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2948.80004196622	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACTGCTTGCCTGGTGT	9969	False	NA	-13	True	AATAAA	-14	NA	145128402	145120518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125069_145128312
transcript_108942.known	chr5	-	1967	3	FSM	ENSMUSG00000029627.13	ENSMUST00000031632.9	1967	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTTGTTTCTTTGTCT	1591	False	NA	NA	False	NA	NA	NA	145138678	145131755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_145133010_145135486_145135611_145138089
transcript_108947.known	chr5	+	3794	6	FSM	ENSMUSG00000055991.16	ENSMUST00000085671.10	3794	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.08625335328044	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTGAGGTTTCTCTC	937	False	NA	10	True	ATTAAA	-15	NA	145141371	145158560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149451_145155096_145155694_145156862
transcript_108949.known	chr5	+	1227	5	FSM	ENSMUSG00000055991.16	ENSMUST00000161896.2	1227	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.3632965850243	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTTCCTCCAAGCCTCA	1498	False	NA	NA	False	NA	NA	NA	145141932	145155372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145142519_145144372_145144519_145148555_145148639_145149314_145149451_145155096
transcript_108952.known	chr5	+	3469	4	FSM	ENSMUSG00000055991.16	ENSMUST00000031601.8	3469	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	31.4147877422224	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTGAGGTTTCTCTC	1043	False	NA	10	True	ATTAAA	-15	NA	145141477	145158560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145142519_145144385_145144519_145155096_145155694_145156862
transcript_108958.known	chr5	+	1765	5	FSM	ENSMUSG00000007812.17	ENSMUST00000200039.5	1765	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	167.334059593377	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATGCTTGATGTCTTG	1291	False	NA	NA	False	AATAAA	-16	NA	145168524	145175132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546_145172674_145173859
transcript_108959.known	chr5	+	4157	5	FSM	ENSMUSG00000007812.17	ENSMUST00000199322.5	4157	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	175.330402383614	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTAGACTCTTTGTTTTGA	1331	False	NA	15	True	NA	NA	NA	145168564	145184111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145179729_145179835_145180384
transcript_108965.known	chr5	+	1150	4	FSM	ENSMUSG00000007812.17	ENSMUST00000196069.5	1150	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	192.902969276151	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1305	False	NA	NA	False	AATACA	-16	NA	145168538	145174658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145173859
transcript_108966.known	chr5	+	597	4	FSM	ENSMUSG00000007812.17	ENSMUST00000085661.9	597	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	194.635271440941	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATGCCACCATTATGTAAA	1333	False	NA	NA	False	NA	NA	NA	145168566	145174092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145168642_145170250_145170413_145172546_145172674_145173859
transcript_108967.known	chr5	+	4104	4	FSM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	68.241401574769	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGACTCTTTGTTTTGAG	1299	False	NA	16	True	NA	NA	NA	145168532	145184112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145168642_145170250_145170413_145179729_145179835_145180384
transcript_108974.known	chr5	+	601	3	FSM	ENSMUSG00000007812.17	ENSMUST00000199003.5	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	213	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTTGTGTGAAATGCCA	1332	False	NA	NA	False	CATAAA	-17	NA	145168565	145174222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_145168642_145170250_145170413_145173859
transcript_108976.nnic	chr5	+	2560	6	NNC	ENSMUSG00000070420.5	novel	1796	5	NA	NA	-29	607	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	6.67532770731145	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTTGGGAATGGAACCAA	2744	False	NA	NA	False	NA	NA	NA	145217280	145228695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_145217438_145220161_145220591_145223117_145223320_145224117_145224210_145225103_145225228_145227139
transcript_108977.nnic	chr5	+	2915	6	NNC	ENSMUSG00000070420.5	novel	1796	5	NA	NA	-29	962	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	6.67532770731145	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTAACTTTCCTGTAAAT	2744	False	NA	9	True	AATAAA	-22	NA	145217280	145229050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_145217438_145220161_145220591_145223117_145223320_145224117_145224210_145225103_145225228_145227139
transcript_108979.nic	chr5	+	2884	6	NIC	ENSMUSG00000070420.5	novel	1796	5	NA	NA	-25	962	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	14.7431339951857	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTAACTTTCCTGTAAAT	2748	False	NA	9	True	AATAAA	-22	NA	145217284	145229050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_145217438_145220188_145220591_145223117_145223320_145224117_145224210_145225103_145225228_145227139
transcript_108986.known	chr5	-	802	5	FSM	ENSMUSG00000029634.16	ENSMUST00000161331.8	802	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	52.1488254901297	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCAGGTGTTAACAGAG	2801	False	NA	NA	False	NA	NA	NA	146157745	146148513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146157547
transcript_108987.known	chr5	-	2388	5	FSM	ENSMUSG00000029634.16	ENSMUST00000067837.10	2388	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	36.6401419211225	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAACCTTTAAAATGTTT	2760	False	NA	NA	False	AGTAAA	-24	NA	146157786	146146766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146157749
transcript_108989.known	chr5	-	3452	5	FSM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	27.6348964173923	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGTGCAAACTTATTTC	2181	False	NA	NA	False	ATTAAA	-28	NA	146158365	146146001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146158029
transcript_108995.known	chr5	+	2467	13	FSM	ENSMUSG00000029635.16	ENSMUST00000161181.8	2467	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	40.014580675882	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAGGTGTTATGTAA	NA	False	NA	NA	False	AATAAA	-19	NA	146168059	146239641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_146168145_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229448_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
transcript_108996.known	chr5	+	2973	13	FSM	ENSMUSG00000029635.16	ENSMUST00000031640.15	2973	13	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	19.7545704978761	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	AATAAA	-20	NA	146168097	146239684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_146168631_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229433_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
transcript_108998.nnic	chr5	+	2472	12	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-71	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	37.5886830164225	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	AATAAA	-20	NA	146167968	146239684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_146168145_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
transcript_108999.nnic	chr5	+	2948	12	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-61	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_6	26.9241358433115	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	AATAAA	-20	NA	146167978	146239684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_146168631_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
transcript_109.known	SIRV3	-	589	3	FSM	SIRV3C	SIRV310	589	3	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_2	66	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTTGGTTTTGGGTACT	NA	False	NA	NA	False	NA	NA	NA	9914	8759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_-_8967_9189_9325_9667
transcript_109003.known	chr5	+	5196	10	FSM	ENSMUSG00000029636.12	ENSMUST00000016143.9	5196	10	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_1	19.5037191768236	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTCTGCTTATTTATA	NA	False	NA	15	True	AATAAA	-19	NA	146321794	146410425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405024_146405390_146407029
transcript_109011.known	chr5	-	4327	9	FSM	ENSMUSG00000029640.18	ENSMUST00000085614.6	4327	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	37.7638633484446	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATACTTTTTTTTCCTTTT	1122	False	NA	NA	False	NA	NA	NA	146731816	146671618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_146674591_146675909_146675989_146677103_146677302_146688504_146688589_146688702_146688780_146691179_146691410_146700010_146700225_146705746_146705828_146731424
transcript_109018.known	chr5	+	1856	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	0	0	0	0	multi-exon	FALSE	canonical	3	6955	junction_1	2705.44403749181	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTGTTAGTGATGGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	146769699	146773842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
transcript_109019.known	chr5	+	899	6	FSM	ENSMUSG00000041453.13	ENSMUST00000075453.9	899	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	5104.64844626934	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGAAGTGTTTTCCTTA	NA	False	NA	1	True	AATAAA	-15	NA	146770004	146772795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_146770377_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
transcript_109020.known	chr5	+	1067	6	FSM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	5077.72757835629	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146770011	146772796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
transcript_109028.known	chr5	+	1126	4	FSM	ENSMUSG00000029641.9	ENSMUST00000031646.8	1126	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.816496580927726	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTGTTTTCTGAATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	146781880	146784536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_146782151_146782469_146782527_146782649_146782730_146783817
transcript_10903.known	chr10	+	1955	5	FSM	ENSMUSG00000020325.11	ENSMUST00000020575.5	1955	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	2.6809513236909	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTATTTTCTGCCTCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	79613105	79618464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79613232_79614396_79614583_79615798_79616015_79616957_79617186_79617265
transcript_109030.known	chr5	+	1298	9	FSM	ENSMUSG00000016503.19	ENSMUST00000146511.8	1298	9	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_8	56.9906790624572	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTTCCGTCGT	NA	False	NA	23	True	ATTAAA	-23	NA	146885466	146892424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933_146891994_146892177
transcript_109032.known	chr5	+	1426	8	FSM	ENSMUSG00000016503.19	ENSMUST00000132102.2	1426	8	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_2	50.1141553997328	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCGACTCTTTGCTGTT	NA	False	NA	15	True	ATTAAA	-15	NA	146885514	146892416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933
transcript_109036.known	chr5	-	1257	5	FSM	ENSMUSG00000016510.12	ENSMUST00000110564.8	1257	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	53.0023584380922	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGAGTGAGGAAGACAG	NA	False	NA	NA	False	GGGGCT	-7	NA	146900559	146892176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900521
transcript_109038.known	chr5	-	4927	4	FSM	ENSMUSG00000016510.12	ENSMUST00000066675.10	4927	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	27.6445694888204	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCTCGGGGAATATAAAC	NA	False	NA	NA	False	AATAAA	-17	NA	146900595	146888382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900521
transcript_109039.known	chr5	-	1134	4	FSM	ENSMUSG00000016510.12	ENSMUST00000110566.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	16.996731711976	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGAGTGAGGAAGACAG	NA	False	NA	NA	False	GGGGCT	-7	NA	146900607	146892176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900532
transcript_109044.nic	chr5	+	494	3	ISM	ENSMUSG00000016503.19	ENSMUST00000146511.8	1298	9	-34	4388	-34	-4377	5prime_fragment	FALSE	canonical	3	430	junction_2	43.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAACTTGAAGAAACACAT	NA	False	NA	NA	False	NA	NA	NA	146885432	146888036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_146885786_146887342_146887444_146887996
transcript_109047.known	chr5	-	4557	10	FSM	ENSMUSG00000016520.8	ENSMUST00000016664.8	4557	10	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	11.6724853214835	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGCCTCATGTTTCCTCG	4960	False	NA	NA	False	NA	NA	NA	147013396	146953464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_146955867_146956816_146956976_146961161_146961394_146964016_146964195_146964862_146965001_146965896_146966266_146969684_146969885_146970088_146970331_146978840_146979309_147013227
transcript_109062.known	chr5	-	2261	3	FSM	ENSMUSG00000029646.4	ENSMUST00000031650.4	2261	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGACGTGTAGGGGTGGA	NA	False	NA	NA	False	AATAAA	-20	NA	147244080	147237614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_147238904_147239990_147240137_147243254
transcript_109064.known	chr5	+	1081	3	FSM	ENSMUSG00000106820.2	ENSMUST00000201128.2	1081	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	30.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGAGTTGTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	147355410	147359854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_147355512_147357439_147357607_147359041
transcript_109069.known	chr5	+	1579	6	FSM	ENSMUSG00000029649.11	ENSMUST00000031654.10	1579	6	0	0	0	0	multi-exon	FALSE	canonical	3	2983	junction_1	193.876661823954	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACTGTTTGTGGACTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	147797270	147813266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147809375_147809470_147812273
transcript_109071.known	chr5	+	383	5	FSM	ENSMUSG00000029649.11	ENSMUST00000201376.4	383	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	1373.19026358331	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTGTAATAAGGGGCCC	NA	False	NA	NA	False	NA	NA	NA	147797437	147812331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147812273
transcript_109073.known	chr5	+	3850	4	FSM	ENSMUSG00000029649.11	ENSMUST00000201120.2	3850	4	0	0	0	0	multi-exon	FALSE	canonical	3	2983	junction_1	226.704408622525	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGATTGT	NA	False	NA	NA	False	NA	NA	NA	147797462	147809873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221
transcript_109075.known	chr5	-	2434	6	FSM	ENSMUSG00000029650.11	ENSMUST00000031655.4	2434	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	0.8	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGTGGTTTTCATTT	NA	False	NA	NA	False	AATGAA	-26	NA	147831625	147815250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_147816025_147816502_147816660_147821006_147821091_147822780_147823652_147830642_147830856_147831290
transcript_109076.known	chr5	-	2210	6	FSM	ENSMUSG00000029650.11	ENSMUST00000118527.8	2210	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	0.894427190999916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGGTTTTCATTTTTCC	NA	False	NA	NA	False	AATGAA	-30	NA	147831625	147815246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_147816025_147816502_147816660_147821006_147821091_147822780_147823652_147830642_147830856_147831518
transcript_10908.known	chr10	+	2651	9	FSM	ENSMUSG00000035863.15	ENSMUST00000046945.13	2651	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	77.7495980697007	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	79629405	79656730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79629575_79642473_79642526_79642867_79642949_79643411_79643543_79645303_79645455_79648176_79648199_79651018_79651076_79652625_79652758_79654874
transcript_109082.known	chr5	+	1009	4	FSM	ENSMUSG00000029651.17	ENSMUST00000085554.5	1009	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	28.87136220471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGAATTATTGGGAAATG	NA	False	NA	NA	False	NA	NA	NA	148239983	148250810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_148240080_148240292_148240413_148243439_148243538_148250115
transcript_109085.known	chr5	+	585	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCCTCCTCTGGA	NA	False	NA	15	True	ATTAAA	-23	NA	148239974	148250270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
transcript_10909.known	chr10	+	2519	8	FSM	ENSMUSG00000035863.15	ENSMUST00000105379.3	2519	8	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_7	12.869835005206	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	79629405	79656730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79629575_79642473_79642526_79642867_79642949_79643411_79643543_79645303_79645455_79648176_79648199_79651018_79651076_79654874
transcript_109091.nic	chr5	+	1292	3	ISM	ENSMUSG00000029651.17	ENSMUST00000110514.8	1532	8	37830	-33	1	0	3prime_fragment	FALSE	canonical	3	103	junction_2	5.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAGAAGGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	148239984	148250881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_148240413_148243439_148243538_148250115
transcript_109094.known	chr5	-	7179	13	FSM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	0	0	0	0	multi-exon	TRUE	canonical	3	299	junction_1	51.9975293216472	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGTGTGGTCTCAAGC	5418	False	NA	-3	True	AATAAA	-20	NA	148336714	148264219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_148269354_148270699_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279547_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
transcript_10910.known	chr10	+	2725	7	FSM	ENSMUSG00000035863.15	ENSMUST00000218631.2	2725	7	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_6	11.7862914721581	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAACAAGAAGAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	79629500	79653232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79629575_79642473_79642526_79642867_79642949_79643411_79643543_79645303_79645455_79648176_79648199_79651018
transcript_109103.nic	chr5	-	3065	12	ISM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	15	5445	15	1665	5prime_fragment	FALSE	canonical	3	383	junction_1	35.5351066081543	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCTACTAAGCCAGTC	5433	False	NA	NA	False	NA	NA	NA	148336699	148269664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279547_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
transcript_109107.known	chr5	-	2064	6	FSM	ENSMUSG00000001687.16	ENSMUST00000201595.4	2064	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	118.120954957196	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATATTTTTTTTTCACT	NA	False	NA	NA	False	AAAAAG	-2	NA	148489599	148441938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762_148488861_148488966
transcript_109113.known	chr5	-	2537	5	FSM	ENSMUSG00000001687.16	ENSMUST00000079324.14	2537	5	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_2	34.1641259217911	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTTTGTTGATGATTT	NA	False	NA	-4	True	AATAAA	-21	NA	148489472	148441444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762
transcript_10912.known	chr10	+	2497	5	FSM	ENSMUSG00000035852.12	ENSMUST00000169041.9	2497	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	3.89711431702997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTCTGGCCCATTCATC	NA	False	NA	41	True	NA	NA	NA	79656822	79666324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79656928_79661529_79663269_79663711_79663846_79665226_79665266_79665844
transcript_109122.known	chr5	+	550	2	FSM	ENSMUSG00000086494.2	ENSMUST00000150265.2	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACATCTACCCTTTGA	NA	False	NA	NA	False	TTTAAA	-5	NA	148678649	148679949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_148678795_148679544
transcript_109123.known	chr5	-	6157	11	FSM	ENSMUSG00000041298.16	ENSMUST00000047257.15	6157	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	3.86781592116274	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGAGATCTTTTCTGC	2443	False	NA	NA	False	AATAAA	-16	NA	148865457	148808393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_148813147_148815667_148815795_148825688_148825824_148828438_148828566_148829319_148829479_148830492_148830599_148830958_148831087_148841376_148841540_148855405_148855567_148858046_148858223_148865335
transcript_109129.known	chr5	-	690	2	FSM	ENSMUSG00000108207.3	ENSMUST00000204570.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATGTGTCTGTATCAT	NA	False	NA	-5	True	ATTAAA	-13	NA	148896514	148895407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_148895541_148895957
transcript_10913.known	chr10	+	2414	5	FSM	ENSMUSG00000035852.12	ENSMUST00000046833.5	2414	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3.57071421427143	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGGAGCAGAGGATGTG	NA	False	NA	3	True	AATAAA	-17	NA	79658460	79666286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79658521_79661529_79663269_79663711_79663846_79665226_79665266_79665844
transcript_109132.known	chr5	-	2838	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACGTCTTTGTAACTTT	6764	False	NA	NA	False	TTTAAA	-18	NA	148989850	148983511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
transcript_109139.known	chr5	-	923	4	FSM	ENSMUSG00000066551.13	ENSMUST00000139443.8	923	4	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_3	1332.80464518331	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTAAACTTTAAGCTTG	6793	False	NA	NA	False	AATAAA	-2	NA	148989821	148986210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_148986712_148987104_148987251_148987397_148987562_148989709
transcript_10914.known	chr10	+	2569	5	FSM	ENSMUSG00000035852.12	ENSMUST00000219305.2	2569	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	3.26917420765551	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTGGCCCATTCAT	NA	False	NA	40	True	NA	NA	NA	79658391	79666323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79658570_79661529_79663269_79663711_79663846_79665226_79665266_79665844
transcript_109142.known	chr5	-	654	3	FSM	ENSMUSG00000066551.13	ENSMUST00000133667.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_2	1488.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTAGAAATTGCTCAAAA	6788	False	NA	NA	False	NA	NA	NA	148989826	148986877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_148987251_148987397_148987562_148989709
transcript_109143.known	chr5	-	461	2	FSM	ENSMUSG00000066551.13	ENSMUST00000123645.2	461	2	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATGAAAACCTACATCC	6823	False	NA	NA	False	NA	NA	NA	148989791	148987182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_148987562_148989709
transcript_109150.known	chr5	+	3148	10	FSM	ENSMUSG00000041264.17	ENSMUST00000100410.10	3148	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	101.142119787266	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTTGGTTTCATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	149121475	149152241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
transcript_109152.known	chr5	+	3827	10	FSM	ENSMUSG00000041264.17	ENSMUST00000122160.8	3827	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	142.108287696738	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121472	149152240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149121617_149122294_149122472_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_109153.known	chr5	+	2931	9	FSM	ENSMUSG00000041264.17	ENSMUST00000117878.8	2931	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_8	110.241141934398	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGTTTCATTTTGT	NA	False	NA	15	True	ATTAAA	-15	NA	149121525	149152243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
transcript_109156.known	chr5	+	3604	9	FSM	ENSMUSG00000041264.17	ENSMUST00000119685.8	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	126.885713833355	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121476	149152240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149121617_149124517_149124645_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_109159.known	chr5	+	3757	9	FSM	ENSMUSG00000041264.17	ENSMUST00000050472.16	3757	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	75.8798392196504	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	16	True	ATTAAA	-16	NA	149121369	149152244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_109162.known	chr5	+	3792	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	82.9762690441658	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTTTTGTTGGTTTCAT	NA	False	NA	10	True	ATTAAA	-10	NA	149121159	149152238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_109168.nic	chr5	+	539	4	ISM	ENSMUSG00000041264.17	ENSMUST00000100410.10	3148	10	-6	21498	-3	-161	5prime_fragment	FALSE	canonical	3	191	junction_1	85.0215658916411	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGGAAACCAACTGTAGG	NA	False	NA	NA	False	NA	NA	NA	149121469	149130743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649
transcript_109170.known	chr5	+	3577	9	FSM	ENSMUSG00000041264.17	ENSMUST00000126168.8	3577	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	123.51492824756	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTGTTGGTTTCATTT	NA	False	NA	12	True	ATTAAA	-12	NA	149121487	149152240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130707_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_109171.known	chr5	+	1251	5	FSM	ENSMUSG00000060063.10	ENSMUST00000071130.5	1251	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	7.22841614740048	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGAGTCTTTTATTGAC	NA	False	NA	20	True	ATTAAA	-32	NA	149201576	149224963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
transcript_109173.known	chr5	+	1456	7	FSM	ENSMUSG00000029660.11	ENSMUST00000201683.4	1456	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	0.957427107756338	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTGGAAATTATTTTCA	NA	False	NA	NA	False	AATAAA	-25	NA	149363167	149394444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149363253_149369234_149369320_149376758_149376925_149380282_149380428_149384285_149384463_149386581_149386744_149393808
transcript_109181.nic	chr5	-	3391	19	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	169	junction_18	290.373753405274	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559853	149540309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434_149559625_149559784
transcript_109194.known	chr5	-	3802	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	0	0	0	0	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGTTCTTTTGTTGTC	NA	False	NA	11	True	TTTAAA	-13	NA	149559803	149540008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
transcript_109201.known	chr5	-	3240	17	FSM	ENSMUSG00000029657.16	ENSMUST00000074846.14	3240	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	344.38590613402	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559674	149540309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
transcript_10921.known	chr10	+	3110	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	2776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGCCTGTCATTGG	1383	False	NA	23	True	AATAAA	-13	NA	79690260	79700266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_109215.known	chr5	-	4764	12	FSM	ENSMUSG00000029657.16	ENSMUST00000201431.4	4764	12	0	0	0	0	multi-exon	FALSE	canonical	3	1194	junction_6	83.4292891075534	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAGAAAGTTGATC	NA	False	NA	NA	False	NA	NA	NA	149559803	149544146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
transcript_109225.known	chr5	+	299	2	FSM	ENSMUSG00000106674.2	ENSMUST00000202583.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGGCAAGAGTAAACTTG	NA	False	NA	NA	False	AATAAA	-18	NA	149565074	149571255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149565217_149571098
transcript_109238.known	chr5	+	4570	15	FSM	ENSMUSG00000051950.11	ENSMUST00000100404.6	4570	15	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_13	51.6933659344471	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGGCTTCTGTTGTCT	NA	False	NA	14	True	AATAAA	-22	NA	149601694	149686064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149668890_149669005_149669969_149670070_149673895_149674016_149677529_149677675_149682903
transcript_109257.nnic	chr5	+	1086	11	NNC	ENSMUSG00000051950.11	novel	4570	15	NA	NA	0	-9939	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_10	165.154503420282	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACAGAAATGAGTGTTTG	NA	False	NA	NA	False	ATTAAA	-27	NA	149601694	149664661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149664505
transcript_109264.known	chr5	+	10517	27	FSM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	0	0	0	0	multi-exon	TRUE	canonical	3	58	junction_1	34.4104188157733	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTACTGGCTAAGTATGGT	384	False	NA	13	True	AATAAA	-22	NA	150446108	150493212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113_150466923_150468359_150468456_150471405_150471476_150471953_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
transcript_109266.nnic	chr5	+	2314	11	NNC	ENSMUSG00000041147.11	novel	10517	27	NA	NA	-41	-831	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_10	18.585209172888	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTAGTTTCAGCATGTCT	329	False	NA	NA	False	AAAAAG	-29	NA	150446053	150462382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460426_150462113
transcript_109268.nnic	chr5	+	4238	11	NNC	ENSMUSG00000041147.11	novel	10517	27	NA	NA	-41	1093	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_10	18.585209172888	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGGAAAATATATCAGAT	329	False	NA	NA	False	AAAACA	-7	NA	150446053	150464306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460426_150462113
transcript_109269.nic	chr5	+	2491	11	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	-55	30830	-41	-831	5prime_fragment	FALSE	canonical	3	58	junction_1	8.68331733843696	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTAGTTTCAGCATGTCT	329	False	NA	NA	False	AAAAAG	-29	NA	150446053	150462382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113
transcript_109273.nic	chr5	+	4415	11	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	-55	28906	-41	1093	5prime_fragment	FALSE	canonical	3	58	junction_1	8.68331733843696	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGGAAAATATATCAGAT	329	False	NA	NA	False	AAAACA	-7	NA	150446053	150464306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113
transcript_109274.nic	chr5	+	4531	11	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	-55	28790	-41	1209	5prime_fragment	FALSE	canonical	3	58	junction_1	8.68331733843696	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTTAATATATCCTTTCA	329	False	NA	NA	False	TATAAA	-2	NA	150446053	150464422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113
transcript_109277.known	chr5	+	3473	11	FSM	ENSMUSG00000041147.11	ENSMUST00000202003.4	3473	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	18.9166593245213	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAGAAATAAAACTTTC	372	False	NA	NA	False	NA	NA	NA	150446096	150463213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_150446556_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495_150460603_150462113
transcript_109283.nic	chr5	+	1587	10	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	-55	33245	-41	-474	5prime_fragment	FALSE	canonical	3	58	junction_1	8.45175122477183	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCAGAAGACTTCATAG	329	False	NA	NA	False	NA	NA	NA	150446053	150459967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495
transcript_109284.nic	chr5	+	2061	10	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	-55	32771	-41	0	5prime_fragment	FALSE	canonical	3	58	junction_1	8.45175122477183	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAGAAAGT	329	False	NA	NA	False	NA	NA	NA	150446053	150460441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495
transcript_109285.nic	chr5	+	2125	10	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	-55	32707	-41	64	5prime_fragment	FALSE	canonical	3	58	junction_1	8.45175122477183	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACAGACACACAGACAGTT	329	False	NA	NA	False	NA	NA	NA	150446053	150460505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495
transcript_109288.nic	chr5	+	2255	10	ISM	ENSMUSG00000041147.11	ENSMUST00000202003.4	3473	11	-43	2772	-41	0	5prime_fragment	FALSE	canonical	3	12	junction_1	19.2687298651801	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAGAAAGT	329	False	NA	NA	False	NA	NA	NA	150446053	150460441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150446556_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495
transcript_109294.nic	chr5	+	1050	9	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	-55	34262	-41	-1491	5prime_fragment	FALSE	canonical	3	58	junction_1	8.89873586527884	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAGATCTGTTCCCTCAG	329	False	NA	NA	False	AATGAA	-15	NA	150446053	150458950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903
transcript_109298.nnic	chr5	+	1772	9	NNC	ENSMUSG00000041147.11	novel	937	3	NA	NA	-2118	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	22.087538907719	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAGAAAGT	4728	False	NA	NA	False	NA	NA	NA	150450452	150460441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_150450577_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495
transcript_109308.known	chr5	+	937	3	FSM	ENSMUSG00000041147.11	ENSMUST00000200686.4	937	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAGAAAAAAAAAGC	370	False	NA	NA	False	NA	NA	NA	150446094	150453305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_150446556_150446639_150446745_150452934
transcript_109310.known	chr5	-	1905	5	FSM	ENSMUSG00000041132.12	ENSMUST00000016279.11	1905	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGGGTTTTCCATTGAA	4563	False	NA	0	True	ATTAAA	-22	NA	150517990	150495108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_150496458_150497464_150497542_150499714_150499804_150500104_150500233_150517728
transcript_109312.known	chr5	-	1371	3	FSM	ENSMUSG00000041132.12	ENSMUST00000200840.2	1371	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATGTCTTGTCTTTCAA	4560	False	NA	NA	False	AATAAA	-17	NA	150517993	150515216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_150516025_150516604_150516903_150517728
transcript_109314.known	chr5	-	747	2	FSM	ENSMUSG00000041132.12	ENSMUST00000200926.2	747	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATCTACCTCATCACTAG	5319	False	NA	NA	False	NA	NA	NA	150517234	150515907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_150516025_150516604
transcript_109321.known	chr5	-	8982	6	FSM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_5	18.6010752377383	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTTGTTTCTTAATT	5437	False	NA	NA	False	AATAAA	-15	NA	150589077	150559436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588965
transcript_109326.nic	chr5	-	584	2	ISM	ENSMUSG00000029655.18	ENSMUST00000144378.2	3842	3	-36	13833	-1	374	5prime_fragment	FALSE	canonical	3	228	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAAATCTAACTCCAAAAA	5436	False	NA	NA	False	AAGAAA	-3	NA	150589078	150585507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_150585979_150588965
transcript_109327.known	chr5	-	293	2	FSM	ENSMUSG00000029655.18	ENSMUST00000141857.2	293	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCCCCCCTTCGAGGT	5703	False	NA	NA	False	TATAAA	-26	NA	150588811	150585881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_150585979_150588615
transcript_109328.nic	chr5	-	525	2	ISM	ENSMUSG00000029655.18	ENSMUST00000144378.2	3842	3	-46	13902	-11	305	5prime_fragment	FALSE	canonical	3	228	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCGTGAAAGGAAGAGTGA	5426	False	NA	NA	False	AGTAAA	-43	NA	150589088	150585576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_150585979_150588965
transcript_109329.known	chr5	-	3842	3	FSM	ENSMUSG00000029655.18	ENSMUST00000144378.2	3842	3	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_2	11.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAAAATTTATTTTT	5472	False	NA	NA	False	NA	NA	NA	150589042	150571674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_150574205_150584743_150585979_150588965
transcript_109331.known	chr5	+	7417	35	FSM	ENSMUSG00000034021.16	ENSMUST00000016569.11	7417	35	0	0	0	0	multi-exon	FALSE	canonical	2	103	junction_31	23.7978256399679	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTGCTAGAGAAAG	NA	False	NA	10	True	AATAAA	-39	NA	150597203	150734155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720136_150724042_150724483_150724586_150724695_150729038_150729178_150731277
transcript_109333.known	chr5	+	7315	35	FSM	ENSMUSG00000034021.16	ENSMUST00000038900.15	7315	35	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_32	36.1914961622709	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATATTTTTATGTGACT	NA	False	NA	-13	True	AATAAA	-16	NA	150597291	150734132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720142_150724042_150724483_150724583_150724695_150729038_150729178_150731277
transcript_109335.nic	chr5	+	4069	32	ISM	ENSMUSG00000034021.16	ENSMUST00000016569.11	7417	35	113	9783	25	1194	5prime_fragment	FALSE	canonical	2	103	junction_31	24.0469537228872	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTACCTCCTGTAGTAGA	NA	False	NA	-16	True	AAGAAA	-16	NA	150597316	150724372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720136_150724042
transcript_109337.nic	chr5	+	4115	32	ISM	ENSMUSG00000034021.16	ENSMUST00000202170.4	6598	35	113	8918	25	1234	5prime_fragment	FALSE	canonical	2	95	junction_31	24.720203266392	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAAATTGGAAACACAGAA	NA	False	NA	24	True	AAGAAA	-44	NA	150597316	150724412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720142_150724042
transcript_109340.nic	chr5	+	3795	31	ISM	ENSMUSG00000034021.16	ENSMUST00000202170.4	6598	35	31	13221	31	-780	5prime_fragment	FALSE	canonical	2	105	junction_29	21.7852141498668	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGACAAGAGAGAAGACCCT	NA	False	NA	NA	False	AATGAA	-38	NA	150597234	150720109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035
transcript_109343.nnic	chr5	+	3988	31	NIC	ENSMUSG00000034021.16	novel	7417	35	NA	NA	43	1194	combination_of_known_splicesites	FALSE	canonical	2	37	junction_28	31.503368426602	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTACCTCCTGTAGTAGA	NA	False	NA	-16	True	AAGAAA	-16	NA	150597334	150724372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717732_150717879_150720035_150720136_150724042
transcript_109347.nic	chr5	+	2671	21	ISM	ENSMUSG00000034021.16	ENSMUST00000202170.4	6598	35	-31	31554	-31	8446	5prime_fragment	FALSE	canonical	3	148	junction_19	14.1826478486917	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTGCACTTCTACACT	NA	False	NA	NA	False	NA	NA	NA	150597172	150701776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617
transcript_109348.nic	chr5	+	2289	20	ISM	ENSMUSG00000034021.16	ENSMUST00000202170.4	6598	35	105	34434	17	5566	5prime_fragment	FALSE	canonical	3	148	junction_19	14.0893468724018	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCACCTCGGCAGGCCAA	NA	False	NA	NA	False	NA	NA	NA	150597308	150698896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859
transcript_109349.known	chr5	+	1977	2	FSM	ENSMUSG00000097321.6	ENSMUST00000181555.4	1977	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151292139	151305648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_151292322_151303853
transcript_109350.known	chr5	-	1317	9	FSM	ENSMUSG00000033970.16	ENSMUST00000038131.10	1317	9	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	24.5098832106561	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTATTTTGCTTACA	NA	False	NA	60	True	TTTAAA	-40	NA	151574707	151566220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_151566569_151567175_151567246_151568077_151568177_151568254_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
transcript_109351.nic	chr5	-	1324	8	NIC	ENSMUSG00000033970.16	novel	1317	9	NA	NA	6	0	intron_retention	FALSE	canonical	3	280	junction_1	25.7206341369758	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATCATTTGTGTTTGTGT	NA	False	NA	-5	True	AATAAA	-18	NA	151574701	151566285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_151566569_151567175_151567246_151568077_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
transcript_109359.known	chr6	+	3788	28	FSM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	0	0	0	0	multi-exon	FALSE	canonical	2	105	junction_25	21.3495308879564	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTGTCTTTGAATTCAA	NA	False	NA	NA	False	TATAAA	-22	NA	3498381	3603531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
transcript_109366.known	chr6	+	1587	6	FSM	ENSMUSG00000001376.18	ENSMUST00000184780.8	1587	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	10.4575331699211	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCAGAAGCTCCAGTTC	6	True	NA	NA	False	NA	NA	NA	3498425	3521345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206
transcript_109370.known	chr6	-	1516	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTGTTCTTGGCAT	NA	False	NA	0	True	ATTAAA	-22	NA	4086972	4076898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
transcript_109372.known	chr6	+	5348	52	FSM	ENSMUSG00000029661.17	ENSMUST00000031668.10	5348	52	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.18590078578381	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCCTTGCTTTGATGCT	253	False	NA	NA	False	AATAAA	-40	NA	4505492	4541544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_4505910_4508334_4508346_4508939_4508955_4509603_4509640_4510683_4510795_4512360_4512415_4515209_4515255_4515480_4515535_4515628_4515683_4515960_4516015_4516391_4516446_4516899_4516954_4518473_4518519_4518790_4518845_4518947_4518993_4519291_4519346_4519829_4519929_4520037_4520083_4520170_4520270_4520595_4520650_4520771_4520880_4521230_4521285_4521395_4521495_4522441_4522496_4522955_4523055_4523593_4523648_4524116_4524171_4524501_4524556_4524875_4524930_4525881_4525927_4527054_4527154_4528305_4528414_4529067_4529122_4530171_4530226_4530956_4531011_4531103_4531158_4531237_4531346_4531894_4531949_4532743_4532798_4533741_4533904_4534580_4534689_4535380_4535489_4535830_4535885_4535975_4536084_4536207_4536262_4536596_4536705_4537172_4537227_4537349_4537458_4537777_4538037_4538625_4538811_4539462_4539706_4540515
transcript_109373.known	chr6	+	3961	18	FSM	ENSMUSG00000015189.13	ENSMUST00000015333.12	3961	18	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_3	9.97574914150592	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTGTGGTTTTTGTTT	87	False	NA	30	True	AATAAA	-41	NA	4600838	4643355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_4601302_4607982_4608080_4608633_4608755_4613234_4613280_4614648_4614712_4619288_4619334_4619760_4619885_4621071_4621287_4624051_4624475_4625465_4625556_4629961_4630082_4631007_4631165_4631518_4631599_4634001_4634104_4635745_4635887_4636968_4637047_4640914_4641008_4641851
transcript_109375.known	chr6	-	1696	11	FSM	ENSMUSG00000004631.16	ENSMUST00000115579.8	1696	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	4.92848861214064	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGTAAAATTTCTTTC	9868	False	NA	NA	False	AATAAA	-36	NA	4747204	4674349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4719373_4719497_4746979
transcript_109392.known	chr6	-	2014	9	FSM	ENSMUSG00000029759.10	ENSMUST00000129344.8	2014	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	14.8492424049175	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGAAAAAAAATATATG	19	True	NA	NA	False	AATAAA	-43	NA	5256233	5220851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246047_5246334_5254515_5254587_5256152
transcript_109393.known	chr6	-	1837	9	FSM	ENSMUSG00000029759.10	ENSMUST00000031773.9	1837	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	13.4350288425444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGAAAAAAAATATATG	-2	True	NA	NA	False	AATAAA	-43	NA	5256286	5220851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
transcript_109400.known	chr6	-	921	5	FSM	ENSMUSG00000029759.10	ENSMUST00000156848.8	921	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	12.871965661856	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATTAATAAAAATAA	70	False	NA	NA	False	TTTAAA	-12	NA	5256214	5236432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
transcript_109405.known	chr6	-	2409	9	FSM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_7	2.57087047515039	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCGTCTTCTCGAAGCCT	14	False	NA	NA	False	ATTAAA	-40	NA	5298455	5264146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_5265480_5266111_5266241_5266964_5267047_5268977_5269179_5272324_5272452_5273000_5273167_5277871_5277928_5289012_5289084_5298211
transcript_109406.known	chr6	-	3484	11	FSM	ENSMUSG00000019577.7	ENSMUST00000019721.7	3484	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_7	4.42831796509691	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGGTCTTATAAAATTC	-3	True	NA	NA	False	AATAAA	-19	NA	5496309	5483350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_5485593_5486677_5486792_5487063_5487175_5487378_5487478_5489134_5489212_5491069_5491148_5491590_5491678_5491829_5492015_5492705_5492778_5494889_5495032_5496032
transcript_109407.known	chr6	-	412	2	FSM	ENSMUSG00000019577.7	ENSMUST00000134068.2	412	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTTTAAAAGTTACCTGAG	31	False	NA	NA	False	NA	NA	NA	5496275	5494862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_5495032_5496032
transcript_109408.known	chr6	+	2518	16	FSM	ENSMUSG00000029757.17	ENSMUST00000115554.4	2518	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.4360439485692	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGGACTCTATTTTCTC	42	False	NA	12	True	AATAAA	-23	NA	5725811	6028039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_5725937_5757377_5757495_5767029_5767145_5769700_5769792_5800774_5800891_5905104_5905195_5913315_5913479_5915829_5915930_5923164_5923291_5961840_5961988_5966702_5966817_5969373_5969508_5972064_5972210_6006269_6006411_6010454_6010581_6027371
transcript_10941.known	chr10	+	3169	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	1137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACCACGTAATAGCATAA	1585	False	NA	NA	False	ATTAAA	-16	NA	79690462	79700605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_109425.known	chr6	-	3121	18	FSM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTGCTTGCTCTTGTG	NA	False	NA	-4	True	AATAAA	-15	NA	6217173	6041218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_109435.nnic	chr6	-	3032	17	NIC	ENSMUSG00000015112.16	novel	3121	18	NA	NA	-54	0	combination_of_known_splicesites	FALSE	canonical	3	53	junction_15	193.208396233187	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTGCTTGCTCTTGTG	NA	False	NA	-4	True	AATAAA	-15	NA	6217227	6041218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6191263_6191318_6216995
transcript_10944.known	chr10	+	2369	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165153.8	2369	13	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_7	243.575949255167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACCCGAATCTTTTCCA	1589	False	NA	NA	False	NA	NA	NA	79690466	79699652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_109449.nic	chr6	-	2219	15	NIC	ENSMUSG00000015112.16	novel	616	4	NA	NA	2	170	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	212.439631280925	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGTTATTGTTTATG	NA	False	NA	-2	True	AATAAA	-21	NA	6217171	6068096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_6068700_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_109466.known	chr6	-	1472	3	FSM	ENSMUSG00000042541.11	ENSMUST00000041111.10	1472	3	0	0	0	0	multi-exon	FALSE	canonical	3	3186	junction_2	110.5	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATACAAAGTTATATCAAA	-25	True	NA	NA	False	AATAAA	-17	NA	6578658	6557293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_6558492_6560407_6560502_6578478
transcript_109467.known	chr6	-	2250	1	FSM	ENSMUSG00000042541.11	ENSMUST00000205180.2	2250	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAAAAACCCA	22	False	6578685	NA	False	AATAAA	-4	NA	6578663	6576413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_6576400_6578700
transcript_10947.known	chr10	+	2598	13	FSM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	485.428926883798	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTCCCTGAGCCCTT	1624	False	NA	31	True	ATTAAA	-15	NA	79690501	79700193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694905_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_109491.known	chr6	-	2001	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	0	0	0	0	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	15627	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1567	False	NA	-9	True	AATAAA	-17	NA	7693254	7675168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
transcript_109493.known	chr6	+	3710	12	FSM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	31.0917065288484	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAAACTTTTTTCTTTT	-18	True	NA	NA	False	AATAAA	-24	NA	8209221	8236274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_8209412_8211579_8211639_8214765_8216100_8216371_8216471_8222460_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233255_8234231_8234362_8235384
transcript_109498.known	chr6	-	670	4	FSM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	1410	junction_2	59.4474557908074	404	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	NA	False	NA	-11	True	AATAAA	-14	NA	8259173	8255935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_8256248_8256694_8256804_8257686_8257762_8258999
transcript_109504.known	chr6	+	2025	4	FSM	ENSMUSG00000089862.9	ENSMUST00000159433.8	2025	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_2	5.43650214343336	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAATGGCTTTCATTGC	10	True	NA	NA	False	AATAAA	-22	NA	8259429	8428760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8426970
transcript_109505.known	chr6	+	6200	8	FSM	ENSMUSG00000029638.18	ENSMUST00000064285.15	6200	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.04389653609465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTACATGTGTTTTTAA	153	False	NA	NA	False	AATAAA	-20	NA	8509599	8597548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_8510320_8537816_8537969_8558499_8558587_8573184_8573299_8579586_8579740_8582579_8582791_8591544_8591666_8592906
transcript_109507.known	chr6	-	2075	14	FSM	ENSMUSG00000062995.13	ENSMUST00000038403.12	2075	14	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	7.8401183423021	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTCACTCCTGTTTGGT	-6	True	NA	-1	True	AATAAA	-35	NA	8778484	8630526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8778071
transcript_109511.known	chr6	-	452	5	FSM	ENSMUSG00000029632.8	ENSMUST00000204714.2	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_4	3332.42722163591	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGCGTGTCACTATTTA	NA	False	NA	-15	True	AATAAA	-11	NA	11907496	11900374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322_11907384_11907471
transcript_109512.known	chr6	-	409	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204084.3	409	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	4235.12888430407	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTGTCACTATTTAATGC	59	False	NA	-11	True	AATAAA	-15	NA	11907392	11900370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906077_11907322
transcript_109513.known	chr6	-	610	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204978.3	610	4	0	0	0	0	multi-exon	FALSE	canonical	3	8511	junction_2	453.262494465281	2426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTTGAATTTCTCTTA	-31	True	NA	69	True	ACTAAA	-17	NA	11907482	11900290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322
transcript_109514.known	chr6	-	468	4	FSM	ENSMUSG00000029632.8	ENSMUST00000031637.8	468	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4249.68315158776	1735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGTGTCACTATTTAATG	2	True	NA	-12	True	AATAAA	-14	NA	11907449	11900371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906080_11907322
transcript_109515.known	chr6	+	3336	18	FSM	ENSMUSG00000029629.18	ENSMUST00000115511.9	3336	18	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	28.335117658721	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAATTCATATTTTTTT	9	True	NA	12	True	AATAAA	-23	NA	11925914	12081204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
transcript_109517.known	chr6	+	478	3	FSM	ENSMUSG00000029629.18	ENSMUST00000155037.4	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	44	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGACAAACAGTTAATTAA	35	False	NA	NA	False	AGTAAA	-41	NA	11907807	11933409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_11908017_11926725_11926837_11933251
transcript_109519.nic	chr6	+	711	3	ISM	ENSMUSG00000029629.18	ENSMUST00000115510.8	3353	17	-30	74603	-30	0	5prime_fragment	FALSE	canonical	3	71	junction_1	42	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGACAAACAGTTAATTAA	NA	False	NA	NA	False	AGTAAA	-41	NA	11925849	11933409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_11926292_11926725_11926837_11933251
transcript_109520.nic	chr6	+	782	3	ISM	ENSMUSG00000029629.18	ENSMUST00000115510.8	3353	17	-30	74532	-30	71	5prime_fragment	FALSE	canonical	3	71	junction_1	42	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAGAAAGAAAAGGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	11925849	11933480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_11926292_11926725_11926837_11933251
transcript_109522.known	chr6	+	6002	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	9.57127865021179	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGTCATCCTCTTGAAA	25	True	NA	18	True	AATAAA	-19	NA	13069837	13089268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
transcript_109530.known	chr6	-	4587	5	FSM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	0	0	0	0	multi-exon	TRUE	canonical	3	155	junction_4	32.9194091684526	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTGTCTCAGACTCAG	NA	False	NA	NA	False	AATAAA	-26	NA	13608099	13580685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13607828
transcript_109531.known	chr6	-	3337	4	FSM	ENSMUSG00000029569.10	ENSMUST00000149123.3	3337	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	103.721850264167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTGTCTCAGACTCAG	NA	False	NA	NA	False	AATAAA	-26	NA	13608099	13580685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13607828
transcript_109532.known	chr6	-	4143	5	FSM	ENSMUSG00000042742.8	ENSMUST00000045235.8	4143	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	9.61769203083567	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGTCTGTTACTTGTA	-13	True	NA	1	True	ATTAAA	-20	NA	13677965	13625671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_13629100_13630588_13630704_13641685_13641857_13663200_13663343_13677678
transcript_109535.known	chr6	-	3177	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	22	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTTTATTTCTGCCC	815	False	NA	NA	False	AATAAA	-19	NA	13871517	13867733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_13870740_13871054_13871146_13871437
transcript_109538.known	chr6	-	767	2	FSM	ENSMUSG00000052419.8	ENSMUST00000185361.2	767	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTTTTATCTCGCAAGT	1	True	NA	NA	False	NA	NA	NA	13871464	13869999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_13870740_13871437
transcript_109540.known	chr6	-	1077	3	FSM	ENSMUSG00000052419.8	ENSMUST00000155856.2	1077	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	53.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATTGTTTTGGTCTGCT	0	True	NA	NA	False	AATACA	-22	NA	13871465	13869798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_13870740_13871054_13871163_13871437
transcript_109541.known	chr6	+	1499	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181225.2	1499	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTGTTATGGATGATAG	28	False	NA	NA	False	AATAAA	-22	NA	13871567	13896421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_13871627_13881271_13881381_13895090
transcript_109544.known	chr6	+	403	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181090.8	403	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACATTTCCTACTATAA	-15	True	NA	NA	False	NA	NA	NA	13871524	14044384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_13871627_13881271_13881381_14044192
transcript_109550.known	chr6	+	3431	5	FSM	ENSMUSG00000041390.19	ENSMUST00000101663.10	3431	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	30.3016088681773	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTGCTTTAAGATCTT	-41	True	NA	8	True	ATTAAA	-16	NA	15720659	15802164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_15720963_15721185_15721364_15740986_15741110_15770212_15770492_15799616
transcript_109556.known	chr6	+	3635	4	FSM	ENSMUSG00000041390.19	ENSMUST00000125326.8	3635	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	31.8433666561813	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	19	True	NA	NA	False	NA	NA	NA	15720719	15773303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_15720963_15721185_15721364_15740986_15741110_15770212
transcript_109557.known	chr6	+	1871	4	FSM	ENSMUSG00000041390.19	ENSMUST00000120512.8	1871	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	16.539514973407	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGTAGAACACTTTT	89	False	NA	NA	False	AATGAA	-36	NA	15721085	15800807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_15721364_15740986_15741110_15770212_15770492_15799616
transcript_109562.known	chr6	+	2440	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTCTTTCTATGTC	-34	True	NA	NA	False	AATAAA	-15	NA	17065147	17105822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
transcript_109567.known	chr6	+	1046	10	FSM	ENSMUSG00000015733.14	ENSMUST00000130606.8	1046	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	571.076371619613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGTTCCATTTCCTTTG	19	True	NA	NA	False	NA	NA	NA	17637108	17665587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660727_17660827_17662096_17662169_17665049_17665113_17665293
transcript_109571.known	chr6	+	2537	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	0	0	0	0	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTAAGTTGTGTGAATT	1217	False	NA	NA	False	AGTAAA	-19	NA	17636981	17666971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
transcript_109585.known	chr6	+	3678	5	FSM	ENSMUSG00000015733.14	ENSMUST00000156701.8	3678	5	0	0	0	0	multi-exon	FALSE	canonical	3	1738	junction_4	95.5628065724317	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAATAGAATAAAAACA	-4	True	NA	NA	False	AAAAAG	-19	NA	17637033	17659608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236
transcript_109587.known	chr6	+	517	6	FSM	ENSMUSG00000015733.14	ENSMUST00000152005.3	517	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	753.066424693068	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTTTGAAAATTCAGGTA	22	True	NA	NA	False	NA	NA	NA	17637111	17660809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17660727
transcript_109590.known	chr6	+	2115	16	FSM	ENSMUSG00000029534.18	ENSMUST00000081635.13	2115	16	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_7	7.93473376995095	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTGACTGATCAAAAAGT	15	False	NA	NA	False	NA	NA	NA	17694030	17942965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_17694362_17819248_17819332_17834615_17834776_17844907_17844963_17846197_17846314_17848002_17848079_17850355_17850425_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922139_17930764_17930858_17934117_17934258_17942668
transcript_109592.known	chr6	+	2046	15	FSM	ENSMUSG00000029534.18	ENSMUST00000052113.12	2046	15	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_6	6.64093674238255	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTGACTGATCAAAAAGT	15	False	NA	NA	False	NA	NA	NA	17694030	17942965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_17694362_17819248_17819332_17834615_17834776_17844907_17844963_17846197_17846314_17848002_17848079_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922139_17930764_17930858_17934117_17934258_17942668
transcript_109595.known	chr6	+	2194	16	FSM	ENSMUSG00000029534.18	ENSMUST00000115419.8	2194	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	10.4490297263536	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTGTGTCGTCTTCTAT	15	False	NA	NA	False	AATAAA	-25	NA	17693992	17943021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_17694362_17819248_17819332_17834615_17834776_17844907_17844963_17846197_17846314_17848002_17848079_17850355_17850425_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922124_17930764_17930858_17934117_17934258_17942668
transcript_109596.known	chr6	-	1736	13	FSM	ENSMUSG00000010796.12	ENSMUST00000010940.11	1736	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	5.42307313450798	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTGTGCTCATTTGTC	-6	True	NA	NA	False	AATAAA	-24	NA	18109056	18050962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_18051403_18054526_18054641_18055433_18055540_18071963_18072074_18073760_18073818_18074824_18074901_18075759_18075885_18076503_18076639_18077151_18077264_18103498_18103611_18104774_18104898_18108401_18108502_18108930
transcript_109600.known	chr6	-	3982	4	FSM	ENSMUSG00000000416.17	ENSMUST00000139557.2	3982	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	33	False	NA	NA	False	ACTAAA	-15	NA	18514798	18431938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_18435446_18448246_18448469_18501947_18502056_18514653
transcript_109601.known	chr6	+	807	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	968	junction_1	14.522013940528	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCTTTTCTTTCCT	1	True	NA	17	True	AATAAA	-17	NA	18848577	18854052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
transcript_109602.known	chr6	+	3800	12	FSM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	20.5043837280255	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAGCTGAGTGTTCGAT	NA	False	NA	NA	False	NA	NA	NA	21949569	21976037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_109605.known	chr6	+	2546	12	FSM	ENSMUSG00000029670.13	ENSMUST00000115389.8	2546	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	46.7513203066312	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCGTGATGTGGCAGTTA	-3	True	NA	22	True	AATATA	-21	NA	21949655	21974902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968916_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_109610.nic	chr6	+	1718	11	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	419	1907	-30	0	3prime_fragment	FALSE	canonical	3	141	junction_5	14.2562267097574	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAAAAC	-37	True	NA	NA	False	TATAAA	-8	NA	21949988	21974130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_109611.nic	chr6	+	2117	11	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	419	1508	-30	0	3prime_fragment	FALSE	canonical	3	141	junction_5	14.2562267097574	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAACTTGTATTTAT	-37	True	NA	8	True	AATAAA	-8	NA	21949988	21974529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_109612.nic	chr6	+	2490	11	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	419	1135	-30	0	3prime_fragment	FALSE	canonical	3	141	junction_5	14.2562267097574	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCGTGATGTGGCAGTTA	-37	True	NA	22	True	AATATA	-21	NA	21949988	21974902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_109617.known	chr6	+	399	5	FSM	ENSMUSG00000029670.13	ENSMUST00000149728.7	399	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	5.58457697592217	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCTCATTCACATACTCCC	-7	True	NA	NA	False	NA	NA	NA	21950018	21967670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625
transcript_109620.known	chr6	-	2826	10	FSM	ENSMUSG00000029672.17	ENSMUST00000165576.8	2826	10	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	15.4416464292006	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTAGTAGTTGCAGTGAT	18	False	22356183	0	True	ATTAAA	-22	NA	22356165	22306518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22343264_22343319_22355993
transcript_109623.known	chr6	-	1487	9	FSM	ENSMUSG00000029672.17	ENSMUST00000081288.14	1487	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	138.299493853015	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGATTTGTGAAAAGCA	NA	False	NA	-21	True	AATAAA	-21	NA	22356242	22307880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22355993
transcript_109628.nic	chr6	-	2230	3	ISM	ENSMUSG00000029672.17	ENSMUST00000163371.8	775	10	-125	28079	-32	-15116	5prime_fragment	FALSE	canonical	3	412	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTACCTGGTTACTGTAGT	NA	False	NA	NA	False	NA	NA	NA	22356197	22337404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_22339377_22343264_22343319_22355993
transcript_109630.known	chr6	-	453	5	FSM	ENSMUSG00000023089.13	ENSMUST00000141274.2	453	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	1535.46725380257	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCCATGTTATT	504	False	NA	-32	True	ATTAAA	-26	NA	24527525	24518665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527458
transcript_109631.known	chr6	-	875	5	FSM	ENSMUSG00000023089.13	ENSMUST00000023851.9	875	5	0	0	0	0	multi-exon	FALSE	canonical	3	2597	junction_4	429.359042643799	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	17	False	NA	-31	True	ATTAAA	-27	NA	24528012	24518664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527524
transcript_109632.known	chr6	-	315	4	FSM	ENSMUSG00000023089.13	ENSMUST00000118558.5	315	4	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	1436.47492920072	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	-4	True	NA	-31	True	ATTAAA	-27	NA	24527569	24518664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_24518824_24519190_24519257_24527271_24527317_24527524
transcript_109633.known	chr6	-	4352	11	FSM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_7	20.1893536300695	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTGTCTCATTTGTTAT	-9	True	NA	NA	False	AATAAA	-27	NA	24665008	24613803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_24616346_24618271_24618381_24619183_24619702_24624234_24624389_24625052_24625096_24626692_24626862_24629923_24629948_24633835_24633933_24634570_24634658_24637647_24637783_24664534
transcript_109634.nic	chr6	-	1016	6	ISM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	-89	12948	-89	-90	5prime_fragment	FALSE	canonical	3	160	junction_2	27.1484806204694	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAGCTAAAAAGAAGAG	NA	False	NA	NA	False	AAGAAA	-9	NA	24665097	24626751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_24626862_24629923_24629948_24633835_24633933_24634570_24634658_24637647_24637783_24664534
transcript_109635.nic	chr6	-	832	4	ISM	ENSMUSG00000029684.15	ENSMUST00000041737.8	1298	5	-110	1202	-89	-1202	5prime_fragment	FALSE	canonical	3	182	junction_1	19.7033556081755	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCCGAAAAGCAGTTACAG	NA	False	NA	NA	False	AATGAA	-15	NA	24665097	24633885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_24633933_24634570_24634658_24637647_24637783_24664534
transcript_109637.known	chr6	-	3151	18	FSM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_8	16.939542404853	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACATCTTCCAGATACTT	0	True	NA	NA	False	AATATA	-22	NA	25809225	25743735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
transcript_109639.nic	chr6	-	2961	17	NIC	ENSMUSG00000029676.16	novel	3151	18	NA	NA	-45	-208	combination_of_known_junctions	FALSE	canonical	3	22	junction_14	31.693847983481	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTTTGTGTCTGTGTGT	NA	False	NA	-6	True	AATAAA	-14	NA	25809290	25743943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25800282_25800510_25805873_25805941_25809173
transcript_109650.known	chr6	-	3271	15	FSM	ENSMUSG00000029676.16	ENSMUST00000115329.8	3271	15	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	16.8498773688991	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAGAAAAAGACAAA	0	True	NA	NA	False	NA	NA	NA	25809225	25748773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
transcript_109653.known	chr6	-	703	5	FSM	ENSMUSG00000039841.15	ENSMUST00000155494.2	703	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	12.1937483982572	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTACACCTGAACAAACTGA	-6	True	NA	NA	False	AATATA	-42	NA	28261931	28244483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261766
transcript_109655.known	chr6	+	1116	6	FSM	ENSMUSG00000020440.14	ENSMUST00000020717.12	1116	6	0	0	0	0	multi-exon	TRUE	canonical	3	1725	junction_4	143.712769091685	715	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGTGTTGTCTGTTGCCT	-31	True	NA	17	True	AATAAA	-17	NA	28423558	28426601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_28423755_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
transcript_109661.known	chr6	-	4650	2	FSM	ENSMUSG00000029708.10	ENSMUST00000090511.4	4650	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTAACTCTTGTTTTTAT	-13	True	NA	NA	False	AATAAA	-16	NA	28421723	28416089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_28419300_28420283
transcript_109667.known	chr6	+	3482	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	2188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGGAGCCAGAACACTG	-7	True	NA	30	True	AATAAA	-31	NA	28480346	28888831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
transcript_109696.known	chr6	-	4465	19	FSM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_12	24.6131175505167	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	0	True	NA	-4	True	NA	NA	NA	29165005	29123574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
transcript_109704.nic	chr6	-	1841	8	ISM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	313	30338	313	2766	5prime_fragment	FALSE	canonical	3	173	junction_1	20.2545031526124	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAACAGTTCTGAGTTTG	-12	True	NA	NA	False	GATAAA	-18	NA	29164692	29153912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
transcript_109712.known	chr6	-	3411	5	FSM	ENSMUSG00000079654.4	ENSMUST00000159200.2	3411	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1.4790199457749	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGTTCTGACCTTCTT	70	False	NA	NA	False	AATAAA	-14	NA	29179583	29169230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_29171568_29176440_29176567_29176901_29177007_29177115_29177831_29179455
transcript_109714.known	chr6	-	2600	15	FSM	ENSMUSG00000003500.14	ENSMUST00000159124.8	2600	15	0	0	0	0	multi-exon	FALSE	canonical	1	64	junction_14	59.8544152123146	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	NA	False	NA	-1	True	AATAAA	-19	NA	29216363	29200435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212167_29216070
transcript_109715.known	chr6	-	2580	15	FSM	ENSMUSG00000003500.14	ENSMUST00000162099.8	2580	15	0	0	0	0	multi-exon	FALSE	canonical	1	42	junction_14	63.7043554080817	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTGATCCTGTTTCTG	7	False	NA	-2	True	AATAAA	-18	NA	29216341	29200436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212170_29216070
transcript_109719.known	chr6	-	2437	14	FSM	ENSMUSG00000003500.14	ENSMUST00000078155.12	2437	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_10	46.9877234375763	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	8	True	NA	-1	True	AATAAA	-19	NA	29212296	29200435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067
transcript_10972.known	chr10	+	1765	12	FSM	ENSMUSG00000006498.17	ENSMUST00000057343.16	1765	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	513.000459136617	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCAGGAAATGGCTTGG	1608	False	NA	NA	False	ATTAAA	-16	NA	79690485	79699258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_109720.known	chr6	-	2471	14	FSM	ENSMUSG00000003500.14	ENSMUST00000162739.8	2471	14	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_13	73.8672245580225	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATCCTGTTTCTGTCCT	-12	True	NA	2	True	AATAAA	-22	NA	29216330	29200432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29216070
transcript_109732.known	chr6	+	982	2	FSM	ENSMUSG00000043421.9	ENSMUST00000054445.9	982	2	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGTCCTGTTGACATG	1	True	NA	14	True	AATAAA	-21	NA	29272624	29275445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29272810_29274648
transcript_109735.known	chr6	+	3229	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCTTTTATTCTC	NA	False	NA	118	True	AATAAA	-22	NA	29348104	29376674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
transcript_109737.known	chr6	+	2670	7	FSM	ENSMUSG00000029767.17	ENSMUST00000090481.14	2670	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	301.970979105977	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCACCTTAGCCATTGCA	-1	True	NA	NA	False	NA	NA	NA	29348117	29376128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29348208_29356469_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
transcript_109741.known	chr6	+	3279	16	FSM	ENSMUSG00000029769.18	ENSMUST00000115275.8	3279	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.55081686262787	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTGTGTGACTTTTTCT	11	True	NA	NA	False	ATTAAA	-20	NA	29396628	29426952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29396742_29397477_29397586_29399199_29399449_29399533_29399609_29405869_29406191_29409223_29409336_29410072_29410242_29411246_29411385_29411708_29411868_29412362_29412534_29412900_29413087_29414784_29414980_29415429_29415655_29417070_29417578_29417930_29418153_29426623
transcript_109745.nic	chr6	+	2901	13	NIC	ENSMUSG00000029769.18	novel	3356	15	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	2.64049658629248	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTGTGTGACTTTTTCT	3653	False	NA	NA	False	ATTAAA	-20	NA	29402857	29426952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_29403025_29405869_29406191_29409223_29409336_29410072_29410242_29411246_29411385_29411708_29411868_29412362_29412534_29412900_29413087_29414784_29414980_29415429_29415655_29417070_29417578_29417930_29418153_29426623
transcript_109752.known	chr6	+	806	3	FSM	ENSMUSG00000004285.13	ENSMUST00000149646.3	806	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	275	False	NA	37	True	ATTAAA	-19	NA	29468066	29470511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29468167_29468965_29469226_29470065
transcript_109753.known	chr6	+	703	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_1	0	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	NA	False	NA	37	True	ATTAAA	-19	NA	29467716	29470511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29467974_29470065
transcript_109754.known	chr6	+	546	2	FSM	ENSMUSG00000004285.13	ENSMUST00000143101.4	546	2	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	275	False	NA	37	True	ATTAAA	-19	NA	29468066	29470511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29468167_29470065
transcript_109757.known	chr6	-	3590	24	FSM	ENSMUSG00000012535.15	ENSMUST00000170350.8	3590	24	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_23	180.197874854504	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAGGAAAGCTGA	31	False	NA	NA	False	AAAAAG	-9	NA	29609810	29541569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29599538_29599698_29609364
transcript_109759.known	chr6	-	3989	23	FSM	ENSMUSG00000012535.15	ENSMUST00000115251.8	3989	23	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	140.778774050425	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	235	False	NA	-2	True	TTTAAA	-5	NA	29609606	29540825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554980_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
transcript_109773.known	chr6	+	2189	9	FSM	ENSMUSG00000029771.13	ENSMUST00000004392.12	2189	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_7	3.25720355519885	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCTGCCCATTTATTGAC	499	False	NA	NA	False	AATAAA	-12	NA	29526623	29537318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29526774_29531124_29531331_29533950_29534141_29534533_29534593_29535039_29535074_29535251_29535510_29535723_29536117_29536202_29536322_29536538
transcript_109777.known	chr6	+	1977	8	FSM	ENSMUSG00000001763.15	ENSMUST00000115250.4	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	7.38172039015075	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAGCTGTCCTACATCAA	5	True	NA	7	True	AATAAA	-16	NA	29694232	29718556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29694544_29709939_29709998_29710588_29710714_29711014_29711090_29713437_29713534_29716703_29716833_29717188_29717351_29717535
transcript_109782.known	chr6	+	3779	12	FSM	ENSMUSG00000001761.8	ENSMUST00000001812.5	3779	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	9.38347413151758	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGTTTCTTTTCCCCAG	19	False	NA	NA	False	NA	NA	NA	29735692	29761364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29736353_29753468_29753675_29754320_29754531_29754690_29754864_29755172_29755393_29755481_29755606_29756779_29756873_29757255_29757365_29758334_29758521_29758864_29759014_29759482_29759618_29759850
transcript_109786.known	chr6	+	5152	17	FSM	ENSMUSG00000029772.18	ENSMUST00000115242.9	5152	17	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	29.2814334305887	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCCTGAGAATACCA	-17	True	NA	9	True	AATAAA	-17	NA	29768490	29912309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29768906_29863138_29863251_29870566_29870711_29871184_29871286_29878527_29878631_29880547_29880643_29883621_29883729_29886116_29886234_29890679_29890744_29891199_29891289_29894817_29894889_29896320_29896416_29903187_29903287_29906506_29906576_29906679_29906759_29908345_29908467_29909038
transcript_109788.known	chr6	+	2146	1	FSM	ENSMUSG00000029772.18	ENSMUST00000201282.2	2146	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGGCCAGTACCCCAGA	-11	True	NA	NA	False	AATAGA	-42	NA	29768496	29770642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29768500_29770600
transcript_109789.known	chr6	+	4741	2	FSM	ENSMUSG00000029772.18	ENSMUST00000143707.2	4741	2	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACCTT	159	False	NA	NA	False	NA	NA	NA	29768441	29867418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29768906_29863141
transcript_109791.known	chr6	+	5370	21	FSM	ENSMUSG00000039629.15	ENSMUST00000046028.12	5370	21	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_19	5.0386009963084	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTTTAGTTCTTTAA	-5	True	NA	NA	False	AATAAA	-24	NA	29917011	29959680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29917230_29920460_29920531_29923913_29923989_29924964_29925103_29926555_29926677_29927319_29927389_29927585_29927693_29928433_29928562_29929778_29929983_29931118_29931355_29931762_29931829_29932201_29932266_29932988_29933061_29937579_29937655_29938460_29938559_29939035_29939163_29941837_29941939_29944424_29944492_29953347_29953453_29955430_29955636_29956656
transcript_109795.known	chr6	+	3098	18	FSM	ENSMUSG00000039629.15	ENSMUST00000137068.6	3098	18	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.07116622894077	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTATTTTGTTTGTTTTCT	-5	True	NA	NA	False	TATAAA	-9	NA	29917011	29945553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29917230_29920460_29920531_29923913_29923989_29924964_29925103_29926555_29926677_29927319_29927389_29927585_29927693_29928433_29928562_29929778_29929983_29931118_29931355_29931762_29931829_29932201_29932266_29932988_29933061_29937579_29937655_29938460_29938559_29939035_29939163_29941837_29941939_29944424
transcript_109796.known	chr6	+	1003	2	FSM	ENSMUSG00000045709.12	ENSMUST00000141679.3	1003	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGCTTAGCAGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	29985233	29993777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_29985466_29993006
transcript_109803.nic	chr6	+	2370	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	163.040383545509	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	-31	True	NA	NA	False	NA	NA	NA	30047983	30140903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
transcript_109804.nic	chr6	+	1956	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	175.389309030574	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	-31	True	NA	2	True	AATAAA	-18	NA	30047983	30144854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
transcript_109805.nic	chr6	+	3282	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	1	-62	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	176.881080578638	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCCTTTGAGAAAAGTTT	-27	True	NA	7	True	ATTAAA	-19	NA	30047987	30153117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
transcript_109811.nic	chr6	+	2367	13	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	167.068411636272	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	-31	True	NA	NA	False	NA	NA	NA	30047983	30140903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
transcript_109812.nic	chr6	+	1950	13	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	178.740889433715	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	-28	True	NA	2	True	AATAAA	-18	NA	30047986	30144854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
transcript_109823.nic	chr6	+	2339	12	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	271	junction_11	90.9985923058862	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	30047978	30140903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
transcript_109824.known	chr6	+	1879	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115206.8	1879	12	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_11	119.561388499108	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGGTTTGGGCTTTGG	15	True	NA	7	True	AATAAA	-23	NA	30048029	30144859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
transcript_109825.known	chr6	+	3295	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115211.8	3295	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_11	122.448774919714	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTATGTTCTTTTCT	-14	True	NA	69	True	TATAAA	-12	NA	30048000	30153179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
transcript_109828.known	chr6	+	2491	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115200.8	2491	12	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_11	150.023028535319	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGATTTGCACAGCTTTAT	0	True	NA	NA	False	AATAAA	-22	NA	30048070	30130115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30129179
transcript_109831.nic	chr6	+	2333	12	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	218	junction_2	102.024061333144	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	-33	True	NA	NA	False	NA	NA	NA	30047981	30140903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
transcript_109832.nic	chr6	+	1917	12	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_11	127.487870108467	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	-31	True	NA	2	True	AATAAA	-18	NA	30047983	30144854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
transcript_109833.known	chr6	+	3584	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115212.8	3584	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_11	130.142642658033	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTGCCCCTCTCTCTA	-28	True	NA	NA	False	AATAAA	-18	NA	30047986	30153457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
transcript_109846.known	chr6	-	4657	7	FSM	ENSMUSG00000039159.17	ENSMUST00000102993.10	4657	7	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	56.6345497220753	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGAACTTGATCTATCA	3	True	NA	-2	True	AATAAA	-22	NA	30304538	30211287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30215083_30221666_30221796_30241370_30241424_30242536_30242577_30260927_30261003_30262145_30262223_30304050
transcript_109853.known	chr6	-	975	5	FSM	ENSMUSG00000039159.17	ENSMUST00000094543.3	975	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	148.302688782099	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGGTTTTTATGAATA	20	True	NA	NA	False	TTTAAA	-23	NA	30304521	30214859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30215083_30221666_30221796_30260927_30261003_30262145_30262223_30304050
transcript_109856.known	chr6	-	1824	10	FSM	ENSMUSG00000039130.19	ENSMUST00000080812.14	1824	10	0	0	0	0	multi-exon	FALSE	canonical	1	382	junction_8	221.210865270177	533	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCTAGAGAATTGTTTT	-9	True	NA	-7	True	AATAAA	-18	NA	30391022	30366378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
transcript_109860.known	chr6	+	5901	10	FSM	ENSMUSG00000029775.15	ENSMUST00000068259.10	5901	10	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_2	43.3720624650147	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGTTGCCATGATTGTC	-21	True	NA	31	True	AATAAA	-18	NA	30401894	30455178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_30402150_30427707_30427795_30439642_30439865_30441775_30441931_30444425_30444575_30446616_30446702_30447409_30447477_30447939_30447988_30449489_30449630_30450485
transcript_109865.known	chr6	+	3951	9	FSM	ENSMUSG00000029775.15	ENSMUST00000068240.13	3951	9	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	36.2954456509353	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAAAAAGGTCTGTTC	-49	True	NA	NA	False	NA	NA	NA	30401866	30453287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_30402150_30439642_30439865_30441775_30441931_30444425_30444575_30446616_30446702_30447409_30447477_30447939_30447988_30449489_30449630_30450485
transcript_109875.known	chr6	-	3485	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGTGAAATCATTTGAA	NA	False	NA	-9	True	AATAAA	-19	NA	30509782	30481226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
transcript_109876.known	chr6	-	2273	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115157.8	2273	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_14	253.514963532123	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	2	True	NA	-18	True	ATTAAA	-16	NA	30509717	30482413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508842_30509683
transcript_109893.known	chr6	-	1718	14	FSM	ENSMUSG00000029782.21	ENSMUST00000102991.9	1718	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	263.056724370784	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACAAGCTGTGGGAGCTT	5	True	NA	NA	False	NA	NA	NA	30509714	30482799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
transcript_109898.nic	chr6	+	1117	7	ISM	ENSMUSG00000071553.11	ENSMUST00000096066.5	1388	11	5333	0	273	0	3prime_fragment	FALSE	canonical	2	2	junction_5	2.98142396999972	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTCTGGTCATTTCCT	1922	False	NA	NA	False	ATTAAA	-22	NA	30546913	30564475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_30547206_30549240_30549340_30550743_30550855_30551964_30552056_30554162_30554363_30557670_30557756_30564236
transcript_1099.nic	chr1	-	3280	26	NIC	ENSMUSG00000026116.12	novel	591	6	NA	NA	-110	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	61.8143543200121	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTTCTTTTCATTATA	7111	False	NA	NA	False	AATAAA	-22	NA	36978718	36853222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_36853499_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
transcript_109901.known	chr6	-	3447	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_8	9.18095855561934	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCGTTTGCTATTAATG	NA	False	NA	0	True	ATTAAA	-16	NA	30693748	30653455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
transcript_109908.known	chr6	-	485	3	FSM	ENSMUSG00000029790.17	ENSMUST00000115130.3	485	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	51	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTATTCCAGACATCTTA	8	True	NA	NA	False	NA	NA	NA	30693699	30679086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30679444_30680129_30680194_30693635
transcript_109909.known	chr6	-	438	6	FSM	ENSMUSG00000029790.17	ENSMUST00000169422.8	438	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	37.4432904536981	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTAATGTCTTCTGCA	32	False	NA	NA	False	AATATA	-18	NA	30693675	30666026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30666181_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
transcript_109912.known	chr6	-	3155	24	FSM	ENSMUSG00000025607.16	ENSMUST00000166192.7	3155	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	47.3145369461355	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	-14	True	AATAAA	-15	NA	30873729	30748410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30748987_30749404_30749501_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
transcript_109925.known	chr6	-	215	2	FSM	ENSMUSG00000025607.16	ENSMUST00000134137.2	215	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATCTTCAGCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	30873683	30873049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30873177_30873595
transcript_109926.known	chr6	-	1261	13	FSM	ENSMUSG00000025607.16	ENSMUST00000135230.8	1261	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	62.5954271492735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGTGTCTGACTTTAGT	NA	False	NA	NA	False	NA	NA	NA	30873699	30801127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_30801194_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
transcript_109927.known	chr6	+	2665	13	FSM	ENSMUSG00000051855.16	ENSMUST00000124665.3	2665	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	120.876888701779	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCGGCTTCCCCTCCCCC	0	True	NA	16	True	AATAAA	-22	NA	30738051	30748464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_30738335_30740238_30740343_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
transcript_109930.known	chr6	+	2561	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTCCGGCTTCCCCTCC	-3	True	NA	13	True	AATAAA	-19	NA	30738048	30748461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
transcript_109939.known	chr6	+	11395	18	FSM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	0	0	0	0	multi-exon	FALSE	canonical	1	225	junction_9	99.990726213583	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTTTGCCAAAATTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	31375669	31493746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
transcript_109947.known	chr6	+	3054	4	FSM	ENSMUSG00000025609.16	ENSMUST00000134544.8	3054	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	42.5284218689886	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACAAGCCGGGCGTGGT	NA	False	NA	NA	False	NA	NA	NA	31375779	31407802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071
transcript_109948.known	chr6	-	964	3	FSM	ENSMUSG00000086212.8	ENSMUST00000144232.8	964	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTAATACAGTGTC	NA	False	NA	NA	False	ATTAAA	-24	NA	31375708	31343819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_31344528_31372632_31372730_31375549
transcript_109949.known	chr6	-	5379	8	FSM	ENSMUSG00000025608.10	ENSMUST00000026698.8	5379	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	7.96164273891016	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGCCCTAGTGTTTTGC	NA	False	NA	1	True	AATAAA	-21	NA	31540916	31496422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_31500155_31501239_31501408_31501604_31501667_31501873_31502028_31503136_31503209_31503481_31503691_31505392_31505972_31540513
transcript_109956.known	chr6	-	1550	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGACTAAGACTGGCC	NA	False	NA	-10	True	AATAAA	-25	NA	33037195	32769151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
transcript_109961.known	chr6	-	1363	6	FSM	ENSMUSG00000053768.14	ENSMUST00000115091.2	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	31.2089730686545	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGAATTATTAGTTTCTG	NA	False	NA	-12	True	AATAAA	-16	NA	33037152	32828377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
transcript_109972.known	chr6	+	4824	18	FSM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_11	15.4671210608191	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGTATGTTGTTTTTCTC	NA	False	NA	20	True	ATTAAA	-22	NA	33226019	33950914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717_33324893_33415314_33415461_33418885_33418975_33556916_33557014_33734901_33735122_33792608_33792746_33815909_33816066_33838995_33839175_33887422_33887565_33895335_33895515_33898312_33898473_33948848
transcript_109973.known	chr6	+	4225	7	FSM	ENSMUSG00000029763.18	ENSMUST00000137043.8	4225	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	14.5143607047182	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGGAAGAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	33226062	33327907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717
transcript_109975.known	chr6	+	3058	20	FSM	ENSMUSG00000056215.14	ENSMUST00000070189.10	3058	20	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	1.53806728381078	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCTTTTCCAGACTAATTA	NA	False	NA	NA	False	AATAAA	-19	NA	34006382	34110969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34006689_34013435_34013544_34016242_34016325_34020339_34020441_34025793_34025876_34033005_34033131_34039285_34039430_34047995_34048077_34049304_34049392_34050650_34050758_34055598_34055719_34063310_34063408_34067106_34067221_34069671_34069874_34072458_34072555_34093323_34093455_34104111_34104201_34106039_34106166_34108899_34109046_34110255
transcript_109977.known	chr6	-	6253	10	FSM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	11.5223882983853	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGTCCAATCACCATTG	NA	False	NA	NA	False	AATAAA	-18	NA	34154046	34130314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34143308_34143359_34144559_34144663_34147395_34147510_34153712
transcript_109988.known	chr6	-	1387	10	FSM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_4	199.673498924718	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	NA	False	NA	-5	True	AATAAA	-16	NA	34294413	34280868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
transcript_109991.nic	chr6	-	1697	8	ISM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	35	4211	-2	-522	5prime_fragment	FALSE	canonical	3	629	junction_2	218.190424227302	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAGGTGACAAATCTCAAA	NA	False	NA	NA	False	AGTAAA	-12	NA	34294378	34285079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
transcript_109992.known	chr6	+	1358	10	FSM	ENSMUSG00000029762.7	ENSMUST00000038406.7	1358	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.94999208608714	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGAAGTGATTTTTGAG	NA	False	NA	NA	False	AATAAA	-32	NA	34331053	34345398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34331232_34333190_34333359_34334395_34334513_34335065_34335144_34340266_34340390_34340656_34340764_34341171_34341254_34342141_34342226_34342837_34342921_34345060
transcript_109993.known	chr6	+	1371	10	FSM	ENSMUSG00000061758.14	ENSMUST00000038383.14	1371	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_8	4.10960933531265	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTCAACTGTCAGAAT	3006	False	NA	4	True	AATAAA	-18	NA	34361152	34373885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34366989_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
transcript_109996.known	chr6	+	1280	10	FSM	ENSMUSG00000061758.14	ENSMUST00000139156.8	1280	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	7.01497516340649	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACATTTTCAACTGTCAG	3069	False	NA	1	True	AATAAA	-15	NA	34361215	34373882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34367014_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
transcript_109997.known	chr6	+	1131	3	FSM	ENSMUSG00000061758.14	ENSMUST00000144384.3	1131	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAGAAATTGAAGGGA	3037	False	NA	NA	False	NA	NA	NA	34361183	34366514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34361343_34364606_34364775_34365710
transcript_109999.known	chr6	+	4041	12	FSM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	28.0630930241598	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCGTGCATTCTTTG	1257	False	NA	32	True	AATAAA	-20	NA	34686376	34752408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
transcript_11.known	ERCC-00035	+	1114	1	FSM	ERCC-00035A	DQ459413	1114	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00035_+_0_1100
transcript_110.known	SIRV3	-	796	3	FSM	SIRV3C	SIRV309	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	1394	junction_2	16	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAAATATCTGTGTC	NA	False	NA	NA	False	CATAAA	-21	NA	9943	8797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_-_8976_9189_9299_9434
transcript_110002.nic	chr6	+	1176	5	ISM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	-56	19666	-56	0	5prime_fragment	FALSE	canonical	3	149	junction_3	28.5252081499855	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAAGAGGGAAGAGA	1201	False	NA	9	True	NA	NA	NA	34686320	34732742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568
transcript_110005.nic	chr6	+	672	3	ISM	ENSMUSG00000029761.17	ENSMUST00000031775.13	2142	13	-248	27863	-56	3623	5prime_fragment	FALSE	canonical	3	208	junction_2	9	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACAGCAGAGGGGGAAG	1201	False	NA	NA	False	NA	NA	NA	34686320	34722766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_34686633_34718723_34718871_34722553
transcript_110006.nic	chr6	+	804	3	ISM	ENSMUSG00000029761.17	ENSMUST00000031775.13	2142	13	-248	27731	-56	3755	5prime_fragment	FALSE	canonical	3	208	junction_2	9	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAGGAGGAGCAAGAGA	1201	False	NA	NA	False	NA	NA	NA	34686320	34722898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_34686633_34718723_34718871_34722553
transcript_110007.known	chr6	+	1264	1	FSM	ENSMUSG00000029761.17	ENSMUST00000201024.2	1264	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACCTTT	1305	False	NA	NA	False	NA	NA	NA	34686424	34687688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34686400_34687700
transcript_110008.known	chr6	+	805	4	FSM	ENSMUSG00000038836.16	ENSMUST00000115014.8	805	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTCAGATTATTCACACT	2116	False	NA	NA	False	NA	NA	NA	34757823	34762579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34757995_34759034_34759154_34760504_34760566_34762125
transcript_110011.known	chr6	-	3326	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115007.9	3326	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	4.92160768674447	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCACCATAGTAAAACCACT	7597	False	NA	NA	False	ATTAAA	-16	NA	34854995	34848774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_34851631_34852471_34852548_34853473_34853707_34854834
transcript_110013.nic	chr6	-	2372	3	NIC	ENSMUSG00000046806.14	novel	1501	4	NA	NA	-51	9	intron_retention	FALSE	canonical	3	18	junction_2	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGACTATTCAATCCTGTT	7546	False	NA	-11	True	NA	NA	NA	34855046	34850620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_34852548_34853473_34853707_34854834
transcript_110014.known	chr6	+	2614	2	FSM	ENSMUSG00000057137.10	ENSMUST00000074949.4	2614	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACTAAAAAAAAAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	34840080	34851881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34840276_34849462
transcript_110016.nic	chr6	-	2836	16	NIC	ENSMUSG00000058486.12	novel	2682	15	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_14	24.5335144920848	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTCTCTTTCTGGAC	5773	False	NA	-1	True	NA	NA	NA	34887814	34857360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34886611_34886763_34887631
transcript_110019.known	chr6	-	2682	15	FSM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_12	11.4653426304081	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTCTCTTTCTGGAC	5776	False	NA	-1	True	NA	NA	NA	34887811	34857360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
transcript_110025.known	chr6	+	1455	9	FSM	ENSMUSG00000029848.12	ENSMUST00000114999.8	1455	9	0	0	0	0	multi-exon	FALSE	canonical	1	14	junction_3	19.2272592950738	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTGGTGTCCTGGCA	NA	False	NA	11	True	TATAAA	-16	NA	34897894	34916277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34897990_34904653_34904852_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_110026.known	chr6	+	1207	8	FSM	ENSMUSG00000029848.12	ENSMUST00000114997.3	1207	8	0	0	0	0	multi-exon	FALSE	canonical	1	14	junction_2	25.1931315550691	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTGGTGTCCTGGCA	NA	False	NA	11	True	TATAAA	-16	NA	34897944	34916277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34897990_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_110027.known	chr6	+	1803	10	FSM	ENSMUSG00000029848.12	ENSMUST00000031876.12	1803	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.6515106767613	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGGTGTCCTGGCAGT	NA	False	NA	13	True	TATAAA	-18	NA	34897097	34916279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_34897121_34897571_34897990_34904653_34904852_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_110028.known	chr6	-	2003	12	FSM	ENSMUSG00000029847.14	ENSMUST00000201355.4	2003	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	2.56808125305919	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATGAAGAGCATAATCAG	NA	False	NA	NA	False	NA	NA	NA	34965339	34922869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_34923272_34925142_34925239_34925332_34925442_34925739_34925905_34930699_34930954_34931904_34932062_34932804_34932926_34933811_34933994_34936389_34936550_34953960_34954119_34955843_34955991_34965287
transcript_110032.known	chr6	-	3473	12	FSM	ENSMUSG00000038784.14	ENSMUST00000114993.9	3473	12	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	43.8453329687493	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGACCCTCGGGTGAGTC	7681	False	NA	-8	True	AATAAA	-14	NA	35110624	34999005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_35000368_35001062_35001276_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
transcript_110033.known	chr6	-	3279	11	FSM	ENSMUSG00000038784.14	ENSMUST00000114989.9	3279	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	65.3360543651053	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCGGGTGAGTCTTGTT	7676	False	NA	-3	True	AATAAA	-19	NA	35110629	34999000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_35000368_35027996_35028495_35029776_35030027_35033145_35033204_35041823_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
transcript_110034.known	chr6	-	3296	11	FSM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	41.7378724901018	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATCTTAACAATA	7646	False	NA	NA	False	AAAAAG	-28	NA	35110659	35021930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_35023294_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
transcript_110046.nic	chr6	-	642	3	ISM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	-50	33080	-50	-25176	5prime_fragment	FALSE	canonical	3	141	junction_1	39.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTCAGAAAATAGAAAACAT	7596	False	NA	NA	False	NA	NA	NA	35110709	35055010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_35055114_35056895_35057162_35110436
transcript_110050.known	chr6	+	6412	43	FSM	ENSMUSG00000038759.16	ENSMUST00000043815.16	6412	43	0	0	0	0	multi-exon	FALSE	canonical	2	193	junction_5	62.1117418909309	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAATGTGTGGTCATTC	NA	False	NA	NA	False	AATAAA	-16	NA	35154364	35224531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259_35182470_35185015_35185116_35185729_35185868_35187762_35187953_35189661_35189783_35191252_35191335_35191580_35191746_35192008_35192134_35196619_35196735_35200447_35200598_35201080_35201153_35201456_35201615_35202118_35202200_35202724_35202917_35204237_35204506_35204599_35204699_35207438_35207588_35209332_35209525_35210270_35210393_35211612_35211752_35213700_35213828_35215879_35215957_35217943_35218073_35218253_35218384_35220753_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
transcript_110057.known	chr6	+	2409	15	FSM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	0	0	0	0	multi-exon	FALSE	canonical	2	193	junction_5	41.0390555645796	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTTATTCCTTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	35154550	35182588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259
transcript_110063.known	chr6	+	2521	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	0	0	0	0	multi-exon	FALSE	canonical	3	978	junction_2	33.5	509	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCTGCCACACTACTT	NA	False	NA	15	True	NA	NA	NA	35229588	35240431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_35229718_35237344_35237399_35238093
transcript_110065.known	chr6	-	3427	16	FSM	ENSMUSG00000029843.5	ENSMUST00000031868.5	3427	16	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	3.05213950460256	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGAGTGAGGTCTACTC	NA	False	NA	NA	False	AATAAA	-16	NA	35285066	35244891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_35245904_35247278_35247417_35248543_35248706_35251850_35251976_35252575_35252674_35253383_35253486_35255171_35255274_35256345_35256466_35257243_35257432_35260173_35260255_35261564_35261605_35264281_35264337_35264688_35264853_35266728_35266866_35278659_35278789_35284292
transcript_110068.known	chr6	-	3960	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGCTGCTCATAGAAAAG	4148	False	NA	NA	False	ATTAAA	-15	NA	35516823	35485840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
transcript_110074.known	chr6	-	7082	12	FSM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	9.34552529156102	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCCTGGTCTTTAAATC	NA	False	NA	0	True	AATAAA	-18	NA	37419081	37304189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37356746_37356964_37418633
transcript_110075.nnic	chr6	-	2636	11	NNC	ENSMUSG00000038648.6	novel	7082	12	NA	NA	-40999	3170	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_10	25.5556256037687	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTCCTCTTTCATACAA	7973	False	NA	NA	False	ATTAAA	-25	NA	37354469	37308056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37354383
transcript_110084.known	chr6	+	3940	19	FSM	ENSMUSG00000029833.18	ENSMUST00000120428.8	3940	19	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_9	66.0549014078441	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTTATTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	37847745	37943231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922623_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
transcript_110087.known	chr6	+	4042	19	FSM	ENSMUSG00000029833.18	ENSMUST00000031859.14	4042	19	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	112.54974208964	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTTATTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	37847745	37943231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922725_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
transcript_110102.nic	chr6	+	1200	5	ISM	ENSMUSG00000029833.18	ENSMUST00000149828.8	2722	8	-22	27312	-22	-2018	5prime_fragment	FALSE	canonical	3	465	junction_1	34.8667104843574	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTAAGTGCATTTATGAC	NA	False	NA	NA	False	TATAAA	-25	NA	37847723	37896422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308
transcript_110103.known	chr6	+	3048	4	FSM	ENSMUSG00000029833.18	ENSMUST00000153004.8	3048	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	231.992815980725	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAATCTCATCG	NA	False	NA	NA	False	NA	NA	NA	37847745	37898440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_37848410_37880467_37880587_37892099_37892233_37896308
transcript_110105.nic	chr6	-	3276	21	ISM	ENSMUSG00000038600.13	ENSMUST00000114908.5	3307	22	12452	0	88	0	3prime_fragment	FALSE	canonical	2	4	junction_15	2.50199920063936	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTAAGATGTCGTTATTC	NA	False	NA	NA	False	NA	NA	NA	38074032	38025417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_38026019_38027400_38027573_38028378_38028497_38029944_38030053_38031489_38031592_38035659_38035877_38037904_38038024_38044671_38044766_38048783_38048942_38051056_38051197_38053620_38053772_38055680_38055894_38058965_38059060_38059854_38059938_38062903_38063031_38064864_38064960_38065547_38065674_38069335_38069431_38069694_38069774_38070872_38071007_38073782
transcript_110107.known	chr6	+	631	3	FSM	ENSMUSG00000029829.5	ENSMUST00000031851.5	631	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGGCTCTTTTATTAT	NA	False	NA	NA	False	TTTAAA	-18	NA	38086189	38092744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_38086491_38091542_38091612_38092483
transcript_110108.known	chr6	-	6536	4	FSM	ENSMUSG00000047749.3	ENSMUST00000058524.3	6536	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	7.31816613336672	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTATGTATAGTGATT	NA	False	NA	-7	True	AATAAA	-14	NA	38276194	38264330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_38270073_38271992_38272255_38274886_38275023_38275798
transcript_110110.known	chr6	-	4944	13	FSM	ENSMUSG00000029826.15	ENSMUST00000114900.8	4944	13	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_3	27.2865453210104	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTCTGTTTATGGTTCT	9994	False	NA	0	True	AATAAA	-32	NA	38331208	38282220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
transcript_110117.nic	chr6	-	3003	11	ISM	ENSMUSG00000029826.15	ENSMUST00000143702.5	3364	12	-364	1003	-34	-1003	5prime_fragment	FALSE	canonical	3	16	junction_1	23.6042369078096	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACATAATCAGACCTTGT	9630	False	NA	NA	False	GATAAA	-40	NA	38331572	38288524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
transcript_110124.known	chr6	-	3400	9	FSM	ENSMUSG00000029826.15	ENSMUST00000031850.10	3400	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	12.2212673238089	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTTGGATTTTTTT	9664	False	NA	-3	True	NA	NA	NA	38331538	38292602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
transcript_110125.known	chr6	-	3052	9	FSM	ENSMUSG00000029826.15	ENSMUST00000114898.3	3052	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	27.0081006366608	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTTGGATTTTTTT	9664	False	NA	-3	True	NA	NA	NA	38331538	38292602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309424_38310124_38313346_38313600_38317154_38317291_38330849
transcript_11013.known	chr10	-	2766	7	FSM	ENSMUSG00000035835.15	ENSMUST00000092325.11	2766	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.10554159678513	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTCTGGAATTTTTTTT	1235	False	NA	NA	False	AATAAA	-15	NA	79710468	79700614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79702016_79702245_79702420_79702501_79702560_79702668_79702865_79703005_79703142_79703221_79703408_79709853
transcript_110132.nic	chr6	-	2341	6	ISM	ENSMUSG00000029826.15	ENSMUST00000031850.10	3400	9	0	13488	0	-13488	5prime_fragment	FALSE	canonical	3	57	junction_4	12.8747815515449	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATGTAAGTTGGTGAC	9664	False	NA	NA	False	NA	NA	NA	38331538	38306090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
transcript_110134.known	chr6	+	348	1	FSM	ENSMUSG00000057696.5	ENSMUST00000119767.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	1214	False	NA	NA	False	NA	NA	NA	38353741	38354089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_38353700_38354100
transcript_110135.known	chr6	+	4195	18	FSM	ENSMUSG00000056832.15	ENSMUST00000162554.8	4195	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_11	3.0576920984393	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTCATGTTTATGCA	3485	False	NA	NA	False	ATTAAA	-23	NA	38358403	38404582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_38358529_38359010_38359149_38362367_38362461_38364531_38364647_38366916_38366967_38368353_38368500_38371956_38372129_38375217_38375293_38377981_38378085_38380401_38380458_38381416_38381471_38382871_38382936_38386349_38386439_38387708_38387793_38388958_38389029_38398473_38398581_38400284_38400419_38402062
transcript_110137.known	chr6	+	479	2	FSM	ENSMUSG00000019689.5	ENSMUST00000019833.5	479	2	0	0	0	0	multi-exon	FALSE	canonical	3	741	junction_1	0	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTGGTTTTTGTGTGCT	9929	False	NA	9	True	ATTAAA	-17	NA	38511757	38516384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_38511946_38516093
transcript_110143.known	chr6	+	2702	10	FSM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_9	33.3603594142346	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACCTAGTAGTTAACAAAC	NA	False	NA	4	True	ATTAAA	-19	NA	38528399	38586405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211_38580404_38585087
transcript_110146.nic	chr6	+	1840	9	ISM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	-48	5594	-48	-1164	5prime_fragment	FALSE	canonical	3	65	junction_1	24.3567239176372	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGTTTTCCACATTT	NA	False	NA	6	True	NA	NA	NA	38528351	38580811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211
transcript_110147.nic	chr6	+	3003	9	ISM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	-48	4431	-48	-1	5prime_fragment	FALSE	canonical	3	65	junction_1	24.3567239176372	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGCTCAGCTGTCATT	NA	False	NA	NA	False	AATAAA	-22	NA	38528351	38581974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211
transcript_11015.known	chr10	-	2843	6	FSM	ENSMUSG00000035835.15	ENSMUST00000166057.8	2843	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.01980390271856	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTCTGGAATTTTTTTT	1299	False	NA	NA	False	AATAAA	-15	NA	79710404	79700614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79702016_79702245_79702420_79702501_79702560_79702668_79703142_79703221_79703408_79709853
transcript_110152.known	chr6	+	4253	8	FSM	ENSMUSG00000029823.17	ENSMUST00000161538.8	4253	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_7	31.7644391078567	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTGTGAGAAGGAAGGT	NA	False	NA	NA	False	AAAAAG	-5	NA	38528399	38583302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38580211
transcript_11016.known	chr10	-	3420	1	FSM	ENSMUSG00000091994.3	ENSMUST00000217802.2	3420	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGGTTGTTATTTCTTGT	NA	False	NA	NA	False	TATAAA	-40	NA	79690805	79687385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79687400_79690800
transcript_110160.nnic	chr6	+	1818	3	NNC	ENSMUSG00000029823.17	novel	2846	3	NA	NA	-38	-2755	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	42.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	38528361	38543745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_38528844_38531914_38533110_38543604
transcript_110161.known	chr6	+	3448	2	FSM	ENSMUSG00000029823.17	ENSMUST00000160922.5	3448	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAATGAGGGAGTGA	NA	False	NA	NA	False	AAGAAA	-43	NA	38528465	38534984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_38528844_38531914
transcript_110167.nnic	chr6	+	1202	2	NIC	ENSMUSG00000029823.17	novel	382	5	NA	NA	-21	18	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAACTAACATTTGTATT	NA	False	NA	51	True	NA	NA	NA	38528378	38546518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_38528844_38545781
transcript_110168.known	chr6	+	2846	3	FSM	ENSMUSG00000029823.17	ENSMUST00000162718.5	2846	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	42.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGATGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	38528465	38534853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_38528844_38531914_38534316_38534786
transcript_110169.known	chr6	-	2276	5	FSM	ENSMUSG00000071537.7	ENSMUST00000096030.7	2276	5	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_3	4.14578098794425	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCTCTGTCCCAGAGGT	NA	False	NA	NA	False	AATAAA	-45	NA	38614168	38603594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_38604661_38605019_38605124_38606698_38606845_38607215_38607318_38613310
transcript_110173.nic	chr6	+	1066	3	ISM	ENSMUSG00000079598.5	ENSMUST00000114874.5	1431	5	13670	0	12858	0	3prime_fragment	FALSE	canonical	2	3	junction_1	1	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGGCATTTGTTCCA	NA	False	NA	NA	False	AATAAA	-20	NA	38653671	38657800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_38653899_38654443_38654545_38657062
transcript_110174.known	chr6	-	3231	12	FSM	ENSMUSG00000038507.7	ENSMUST00000038398.7	3231	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	5.37671748458954	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGACTGGAGTTTATTTT	NA	False	NA	NA	False	AATAAA	-19	NA	39095283	39063343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39064575_39065911_39066064_39067132_39067264_39068238_39068315_39070561_39070659_39073469_39073612_39077182_39077379_39079492_39079617_39082823_39082926_39088444_39088746_39091099_39091236_39094740
transcript_110176.known	chr6	-	9566	20	FSM	ENSMUSG00000042599.9	ENSMUST00000002305.9	9566	20	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	4.65544092368336	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATTCTGACTTGTTGTT	NA	False	NA	92	True	TATAAA	-33	NA	39183723	39113556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39120240_39121225_39121494_39122402_39122489_39123788_39123998_39124121_39124271_39124637_39124736_39125875_39126031_39126220_39126346_39128191_39128402_39129746_39129837_39135147_39135240_39142030_39142138_39143600_39143689_39145874_39146038_39147057_39147245_39147702_39147845_39150211_39150373_39152296_39152415_39158461_39158548_39183374
transcript_110189.nic	chr6	-	4202	17	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_14	89.544681584112	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTTGCCCTTAAGTG	NA	False	NA	-8	True	AATAAA	-16	NA	39354641	39311706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349012_39349072_39349780_39349862_39354552
transcript_110191.nic	chr6	-	2986	17	NIC	ENSMUSG00000029924.13	novel	2878	16	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_14	89.544681584112	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCCCTGCTTAAGCTT	NA	False	NA	-11	True	AATAAA	-22	NA	39354641	39312922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349012_39349072_39349780_39349862_39354552
transcript_110197.nic	chr6	-	2956	16	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_15	85.4180308834148	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCCCTGCTTAAGCTT	NA	False	NA	-11	True	AATAAA	-22	NA	39354628	39312922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39354552
transcript_110202.known	chr6	-	4030	15	FSM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	0	0	0	0	multi-exon	TRUE	canonical	3	160	junction_14	38.6108925098626	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTTGCCCTTAAGTG	NA	False	NA	-8	True	AATAAA	-16	NA	39354609	39311706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
transcript_110211.known	chr6	-	2669	14	FSM	ENSMUSG00000029924.13	ENSMUST00000201448.4	2669	14	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_9	72.7375113825747	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39354606	39312918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
transcript_110219.nic	chr6	-	2136	13	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	-50	8846	-50	291	5prime_fragment	FALSE	canonical	3	160	junction_12	41.2501683498248	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTGACTGTATAATTAAA	NA	False	NA	1	True	AATAAA	-19	NA	39354659	39320552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
transcript_110230.known	chr6	-	2992	8	FSM	ENSMUSG00000029922.16	ENSMUST00000114823.8	2992	8	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_7	1191.73940789358	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39396710	39374737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396400
transcript_110234.known	chr6	-	3046	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	1055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397396	39374737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
transcript_110260.known	chr6	-	1485	5	FSM	ENSMUSG00000029922.16	ENSMUST00000122996.8	1485	5	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_4	1508.75983841034	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGAAATGTCTTCT	NA	False	NA	1	True	AATAAA	-22	NA	39397001	39377687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396773
transcript_110261.known	chr6	-	1511	5	FSM	ENSMUSG00000029922.16	ENSMUST00000051671.11	1511	5	0	0	0	0	multi-exon	FALSE	canonical	3	1568	junction_2	1258.9473777724	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGTCTGTGTGAAATG	NA	False	NA	-5	True	AATAAA	-16	NA	39397292	39377693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
transcript_110271.known	chr6	-	751	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	0	0	0	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	1548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397232	39382472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39382895_39387021_39387151_39397032
transcript_110272.known	chr6	+	830	2	FSM	ENSMUSG00000068601.3	ENSMUST00000090237.3	830	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGTGTGAATTGGCTCAT	NA	False	NA	NA	False	NA	NA	NA	39397311	39398228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_39397587_39397673
transcript_110273.nic	chr6	-	4580	20	NIC	ENSMUSG00000038456.10	novel	4468	19	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_18	37.2191235508675	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCCTAGTGAGTGTAT	NA	False	NA	-7	True	AATAAA	-21	NA	39534811	39439311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39504415_39504518_39534508
transcript_110277.known	chr6	-	4468	19	FSM	ENSMUSG00000038456.10	ENSMUST00000036877.10	4468	19	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_17	14.1962653756995	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCCTAGTGAGTGTAT	NA	False	NA	-7	True	AATAAA	-21	NA	39534801	39439311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39534508
transcript_110287.nnic	chr6	-	4202	18	NIC	ENSMUSG00000038456.10	novel	4468	19	NA	NA	65	0	combination_of_known_splicesites	TRUE	canonical	3	24	junction_14	27.1251106227713	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCCTAGTGAGTGTAT	NA	False	NA	-7	True	AATAAA	-21	NA	39534736	39439311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39483634_39483757_39485175_39485304_39499589_39500694_39534508
transcript_110297.nic	chr6	-	4176	15	ISM	ENSMUSG00000038456.10	ENSMUST00000036877.10	4468	19	-21	5189	-21	637	5prime_fragment	FALSE	canonical	3	100	junction_13	14.3199589555905	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGGGAAGAAAAGGAGGA	NA	False	NA	NA	False	NA	NA	NA	39534822	39444500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39534508
transcript_11030.known	chr10	-	2950	15	FSM	ENSMUSG00000013833.16	ENSMUST00000165684.8	2950	15	0	0	0	0	multi-exon	TRUE	canonical	3	153	junction_9	18.1911617921159	992	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAAGA	1837	False	NA	NA	False	NA	NA	NA	79744732	79730768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830_79739263_79742598_79742769_79742872_79742981_79743324_79743491_79744651
transcript_110300.nic	chr6	-	3539	15	ISM	ENSMUSG00000038456.10	ENSMUST00000036877.10	4468	19	-21	5826	-21	0	5prime_fragment	FALSE	canonical	3	100	junction_13	14.3199589555905	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTTAAAAAAAAAAAAAAG	NA	False	NA	NA	False	CATAAA	-16	NA	39534822	39445137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589_39500694_39534508
transcript_110306.known	chr6	+	749	1	FSM	ENSMUSG00000085058.3	ENSMUST00000200951.2	749	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAATAAAAATAGAGCACT	NA	False	NA	NA	False	NA	NA	NA	39504459	39505208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_39504500_39505200
transcript_110312.known	chr6	-	2253	18	FSM	ENSMUSG00000002413.16	ENSMUST00000101497.4	2253	18	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_13	6.86448157302764	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACCCTGAGTGAGACATT	6711	False	NA	NA	False	AAAACA	-43	NA	39702127	39591045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39591220_39592594_39592730_39600512_39600645_39604655_39604775_39605542_39605590_39616523_39616701_39617384_39617470_39620033_39620152_39621171_39621315_39625383_39625421_39628538_39628699_39637806_39637924_39638937_39639087_39641937_39642041_39643179_39643284_39654311_39654576_39665177_39665280_39702040
transcript_110315.known	chr6	+	3542	8	FSM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	10.7437689582647	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATCCCCTTTTGTGACT	NA	False	NA	NA	False	AATAAA	-24	NA	39550806	39565703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_39552141_39553296_39553444_39556596_39556726_39557929_39558026_39560744_39560997_39562660_39562790_39563774_39563829_39564302
transcript_110322.known	chr6	+	4371	4	FSM	ENSMUSG00000002416.14	ENSMUST00000135671.8	4371	4	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_3	834.773555456142	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCAGCTATCTTTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	39569507	39580316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_39569647_39573384_39573530_39575199_39575296_39576325
transcript_110323.known	chr6	+	455	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATGTTTCTGATGACAA	NA	False	NA	30	True	ATTAAA	-39	NA	39569516	39576405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
transcript_110325.known	chr6	+	491	4	FSM	ENSMUSG00000002416.14	ENSMUST00000002490.7	491	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1056.98470502967	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCATTAAAGGTGTAAAT	NA	False	NA	-19	True	AAGAAA	-7	NA	39569518	39576356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_39569738_39573384_39573530_39575199_39575296_39576325
transcript_110330.known	chr6	-	1107	3	FSM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	1131	junction_2	267.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTTTGAGACAGTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	39787922	39778737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39779479_39782304_39782546_39787797
transcript_110331.known	chr6	-	500	3	FSM	ENSMUSG00000029918.10	ENSMUST00000114797.2	500	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	481	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGTTTAAGATTGGAA	NA	False	NA	-18	True	AATAAA	-12	NA	39787819	39779125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_39779479_39782420_39782546_39787797
transcript_110336.nnic	chr6	+	2659	17	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	-48	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	181.494049058778	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	8	True	NA	NA	NA	40302057	40373696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331947_40332028_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
transcript_110341.known	chr6	+	2531	16	FSM	ENSMUSG00000029916.12	ENSMUST00000031977.12	2531	16	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_15	44.4424221762146	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	8	True	NA	NA	NA	40302105	40373696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
transcript_110354.known	chr6	+	2175	3	FSM	ENSMUSG00000029916.12	ENSMUST00000202949.2	2175	3	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	65.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAGAA	NA	False	NA	NA	False	NA	NA	NA	40302441	40326390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_40302465_40306426_40306534_40324345
transcript_110356.known	chr6	+	1281	1	FSM	ENSMUSG00000029916.12	ENSMUST00000201329.2	1281	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAATCTCAAG	NA	False	NA	NA	False	NA	NA	NA	40302420	40303701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_40302400_40303700
transcript_110357.known	chr6	-	6742	9	FSM	ENSMUSG00000037172.15	ENSMUST00000101492.10	6742	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.09748712602592	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTGCTGTGATCTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	40413069	40378308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_40383869_40385202_40385272_40385992_40386144_40386275_40386408_40388539_40388679_40395425_40395580_40399659_40399819_40400657_40400758_40412791
transcript_110359.known	chr6	+	4398	7	FSM	ENSMUSG00000029911.15	ENSMUST00000114779.9	4398	7	0	0	0	0	multi-exon	FALSE	canonical	3	1713	junction_1	435.133695929577	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGGTATTTTAAATAAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	40448285	40461634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_110361.nnic	chr6	+	839	7	NNC	ENSMUSG00000029911.15	novel	933	7	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1038.11106502789	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448353	40457929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_40448608_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_110362.known	chr6	+	933	7	FSM	ENSMUSG00000029911.15	ENSMUST00000117411.8	933	7	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	935.620961358462	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGGTTATATTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	40448408	40457926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_40448760_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_110365.known	chr6	+	1063	6	FSM	ENSMUSG00000029911.15	ENSMUST00000031971.13	1063	6	0	0	0	0	multi-exon	FALSE	canonical	3	1713	junction_1	476.592320542411	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACATGTTTTATTATTT	NA	False	NA	NA	False	NA	NA	NA	40448348	40455521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856
transcript_110370.known	chr6	+	579	4	FSM	ENSMUSG00000029911.15	ENSMUST00000117830.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	1382.20339394107	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTAAAAGGCCCTAGTTGT	NA	False	NA	NA	False	NA	NA	NA	40448459	40453445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_40448770_40449004_40449068_40451598_40451660_40453300
transcript_110372.known	chr6	+	2837	1	FSM	ENSMUSG00000029911.15	ENSMUST00000201570.2	2837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAATGTATTATAG	NA	False	NA	NA	False	NA	NA	NA	40448386	40451223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_40448400_40451200
transcript_110373.known	chr6	+	1188	6	FSM	ENSMUSG00000029911.15	ENSMUST00000121360.8	1188	6	0	0	0	0	multi-exon	FALSE	canonical	3	2472	junction_3	238.868666844356	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448401	40457929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_110375.known	chr6	+	3762	18	FSM	ENSMUSG00000029869.8	ENSMUST00000114732.3	3762	18	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_2	4.47522978861417	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTCCATGCCTCAG	328	False	NA	13	True	ATTAAA	-25	NA	41582415	41597443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_41582755_41589577_41589650_41590148_41590353_41590685_41590751_41591012_41591776_41592422_41592579_41592850_41593202_41593393_41593519_41593681_41593845_41594197_41594313_41594560_41594614_41594780_41594901_41595001_41595250_41595504_41595679_41596164_41596315_41596540_41596735_41596856_41597013_41597129
transcript_110382.known	chr6	+	930	8	FSM	ENSMUSG00000029864.8	ENSMUST00000031897.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	4.42165358301205	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAAGCATTTCTGGGTC	NA	False	NA	2	True	AATAAA	-13	NA	42222868	42227375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_42223028_42223483_42223566_42223744_42223874_42224417_42224519_42224667_42224704_42226312_42226430_42226772_42226867_42227163
transcript_110383.nic	chr6	+	3604	12	NIC	ENSMUSG00000029863.14	novel	1439	12	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	42.7493173305891	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGCCTGGTGTTTTTG	NA	False	NA	13	True	AATAAA	-20	NA	42241962	42259442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246155_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017_42257128_42257279
transcript_110384.known	chr6	+	1439	12	FSM	ENSMUSG00000029863.14	ENSMUST00000156829.8	1439	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	34.7888554397801	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTTGGAGGCCACTGG	NA	False	NA	NA	False	NA	NA	NA	42242053	42257426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017_42257128_42257279
transcript_110389.known	chr6	+	3529	11	FSM	ENSMUSG00000029863.14	ENSMUST00000031895.13	3529	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	18.1	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGCCTGGTGTTTTTG	NA	False	NA	13	True	AATAAA	-20	NA	42241918	42259442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42256710_42256861_42257017_42257128_42257279
transcript_110396.known	chr6	-	3273	18	FSM	ENSMUSG00000029859.7	ENSMUST00000073387.5	3273	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.13454714835211	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTCTTCCCTTGATGTT	8190	False	NA	NA	False	AATAAA	-15	NA	42350202	42335420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_42335781_42335869_42336026_42337478_42337673_42337938_42338089_42338219_42338427_42338527_42338590_42338710_42338897_42339590_42339717_42340495_42340555_42340743_42340841_42341094_42341246_42341470_42341599_42341709_42342055_42342352_42342509_42342709_42343113_42344519_42344802_42349108_42349177_42350059
transcript_110399.known	chr6	+	2605	10	FSM	ENSMUSG00000029860.17	ENSMUST00000203652.3	2605	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	4.64545443563708	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACAGTCCCCTTCACTT	NA	False	NA	NA	False	ATTAAA	-17	NA	42326761	42335496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_42327054_42327190_42327411_42327879_42328083_42328203_42328297_42328408_42328904_42332850_42332972_42333095_42333266_42333365_42333545_42334246_42334368_42334785
transcript_110400.known	chr6	+	2301	9	FSM	ENSMUSG00000029860.17	ENSMUST00000070635.13	2301	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	9.78439446261239	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGCTAGTACTTGATT	NA	False	NA	3	True	TATAAA	-13	NA	42326802	42335326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_42327054_42327190_42327411_42327879_42328083_42328408_42328904_42332850_42332972_42333095_42333266_42333365_42333545_42334246_42334368_42334785
transcript_110404.known	chr6	-	3342	9	FSM	ENSMUSG00000036667.15	ENSMUST00000121083.8	3342	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	3.27633560552029	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGCTCCAAAGGATATT	NA	False	NA	NA	False	AATAAA	-36	NA	42670021	42646875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42669866
transcript_110405.known	chr6	-	5257	9	FSM	ENSMUSG00000036667.15	ENSMUST00000045054.11	5257	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	3.27633560552029	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGAGGCTTCACATTCA	6073	False	NA	NA	False	AATAAA	-16	NA	42687022	42644935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42686892
transcript_110412.known	chr6	-	453	3	FSM	ENSMUSG00000036667.15	ENSMUST00000153952.2	453	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAATAAAATGAATGCT	6089	False	NA	NA	False	TTTAAA	-4	NA	42687006	42686030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_42686261_42686462_42686572_42686892
transcript_110413.known	chr6	+	5469	15	FSM	ENSMUSG00000033542.14	ENSMUST00000031750.14	5469	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	2.0861545523586	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTCTCAGGTTACTTA	6824	False	NA	NA	False	AATAAA	-20	NA	43242515	43266254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_43242678_43249238_43252360_43252873_43252932_43253470_43253533_43253737_43253992_43256376_43256538_43257094_43257248_43257531_43257662_43257884_43257960_43258356_43258447_43260107_43260266_43260826_43260989_43262292_43262364_43264473_43264579_43265547
transcript_110416.known	chr6	-	2671	9	FSM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	3.903123748999	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGCAATGCTGTGGTATT	NA	False	NA	-6	True	ATTAAA	-19	NA	43643212	43321934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
transcript_110420.known	chr6	-	2148	8	FSM	ENSMUSG00000029735.18	ENSMUST00000114644.8	2148	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	15.0319387862467	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAATAGAGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	43643109	43322207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_43323835_43400554_43400667_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
transcript_110425.known	chr6	+	6279	4	FSM	ENSMUSG00000039419.18	ENSMUST00000199100.5	6279	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	8.01387685344754	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTCTTTGTGTTTTATA	NA	False	NA	NA	False	AATAAA	-31	NA	47221320	47281143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_47221484_47248073_47248314_47273652_47273734_47275348
transcript_110435.nic	chr6	+	3134	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	-99	-7	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGGATTTCTGTACAAG	NA	False	NA	1	True	AATAAA	-6	NA	47430738	47502985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
transcript_110436.nic	chr6	+	3290	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	-167	0	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47430670	47503073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
transcript_110441.known	chr6	+	3161	22	FSM	ENSMUSG00000029686.16	ENSMUST00000031697.9	3161	22	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_1	65.0983905600956	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47431253	47503073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_47431418_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
transcript_110453.known	chr6	+	2385	20	FSM	ENSMUSG00000029686.16	ENSMUST00000146200.8	2385	20	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	99.9423379460748	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAATATAGAGGAAGAC	NA	False	NA	NA	False	AAGAAA	-7	NA	47430837	47500700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632
transcript_110474.known	chr6	-	2787	20	FSM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	0	0	0	0	multi-exon	TRUE	canonical	3	406	junction_7	166.792654135859	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
transcript_110476.known	chr6	-	2775	20	FSM	ENSMUSG00000029687.17	ENSMUST00000114618.8	2775	20	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_12	268.321921839443	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528650_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
transcript_110479.known	chr6	-	2670	19	FSM	ENSMUSG00000029687.17	ENSMUST00000114616.8	2670	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_16	252.803570112703	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47553469_47553599_47554477_47554602_47571827
transcript_110481.nic	chr6	-	2527	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	443	junction_6	133.55213528621	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47572010	47507252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
transcript_110483.nic	chr6	-	2500	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	225	junction_16	191.882044849961	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47572010	47507252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
transcript_110497.nic	chr6	-	1393	10	ISM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	-46	15559	-18	85	5prime_fragment	FALSE	canonical	3	670	junction_7	81.2309616821226	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGACGTCCAGCTCCTC	NA	False	NA	NA	False	GATAAA	-19	NA	47572010	47522631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
transcript_110499.nic	chr6	-	1366	10	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-18	85	combination_of_known_junctions	FALSE	canonical	3	225	junction_7	204.752967689794	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGACGTCCAGCTCCTC	NA	False	NA	NA	False	GATAAA	-19	NA	47572010	47522631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
transcript_110502.nic	chr6	-	918	7	ISM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	-46	22247	-18	0	5prime_fragment	FALSE	canonical	3	670	junction_4	95.1402473544539	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGATTTTTTTCTTTTTA	NA	False	NA	13	True	AAGAAA	-2	NA	47572010	47529319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
transcript_110504.nic	chr6	-	787	6	ISM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	-46	24013	-18	-1766	5prime_fragment	FALSE	canonical	3	670	junction_3	103.179455319361	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAAGATCTAGAGGATAA	NA	False	NA	15	True	AAGAAA	-3	NA	47572010	47531085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
transcript_110507.nic	chr6	-	760	6	ISM	ENSMUSG00000029687.17	ENSMUST00000114618.8	2775	20	-46	24013	-18	-1766	5prime_fragment	FALSE	canonical	3	225	junction_3	269.094778841954	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAAGATCTAGAGGATAA	NA	False	NA	15	True	AAGAAA	-3	NA	47572010	47531085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
transcript_110517.known	chr6	-	2399	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	1371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8890	False	NA	23	True	TTTAAA	-24	NA	47790364	47773074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
transcript_110529.known	chr6	-	3191	4	FSM	ENSMUSG00000051499.8	ENSMUST00000058844.6	3191	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	4.64279609239471	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATGCGTTTGGGTTTGC	5720	False	NA	-7	True	AATACA	-20	NA	47807801	47796199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_47798636_47801974_47802131_47803895_47804023_47807329
transcript_110530.known	chr6	+	2906	6	FSM	ENSMUSG00000062519.14	ENSMUST00000079881.11	2906	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	4.17612260356422	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAACAGGGATCATCACAT	NA	False	NA	NA	False	NA	NA	NA	47812597	47844622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_47812855_47817185_47817582_47835862_47835990_47836352_47836467_47840037_47840152_47842724
transcript_110531.known	chr6	+	3656	2	FSM	ENSMUSG00000062519.14	ENSMUST00000146202.2	3656	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAAAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	47812594	47820581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_47812855_47817185
transcript_110532.known	chr6	+	5573	8	FSM	ENSMUSG00000025821.10	ENSMUST00000061890.8	5573	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_5	6.34388666033558	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCCCTTAACTTTTGG	NA	False	NA	NA	False	NA	NA	NA	47854137	47885419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_47854771_47856933_47857354_47866999_47867127_47867537_47867658_47869788_47869909_47874748_47874863_47875827_47875942_47881494
transcript_110533.known	chr6	+	2761	5	FSM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	2.77263412660235	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGTCTTGCCTTGACC	9713	False	NA	18	True	AATAAA	-23	NA	47930323	47942234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_47930517_47932750_47933105_47934409_47934537_47939458_47939567_47940255
transcript_110534.known	chr6	+	2823	5	FSM	ENSMUSG00000045466.19	ENSMUST00000140719.2	2823	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	12.1937483982572	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTCCCTGTCTTGCCTTG	9770	False	NA	15	True	AATAAA	-20	NA	47930380	47942231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_47930517_47932750_47933105_47934409_47934659_47939458_47939567_47940255
transcript_110538.nic	chr6	-	3255	6	NIC	ENSMUSG00000071477.11	novel	3184	6	NA	NA	-127	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	38.9122088810183	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGAGTGTTTCCTGTTTGC	NA	False	NA	-3	True	AATAGA	-14	NA	48024855	48001138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48024565
transcript_110539.known	chr6	-	3111	6	FSM	ENSMUSG00000071477.11	ENSMUST00000114583.8	3111	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	40.7401521843009	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTTCTTGTTTGGTTTG	NA	False	NA	14	True	AATAGA	-31	NA	48025048	48001121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48024919
transcript_110540.known	chr6	-	3184	6	FSM	ENSMUSG00000071477.11	ENSMUST00000095944.10	3184	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	33.5463857963865	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGAGTGTTTCCTGTTTGC	NA	False	NA	-3	True	AATAGA	-14	NA	48025845	48001138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48025626
transcript_110541.nic	chr6	-	3121	6	NIC	ENSMUSG00000071477.11	novel	3111	6	NA	NA	-127	-134	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	38.9122088810183	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCACGGGGGCAGTGATT	NA	False	NA	-2	True	AATAAA	-15	NA	48024855	48001272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777_48021636_48024565
transcript_110544.known	chr6	-	3648	7	FSM	ENSMUSG00000057691.9	ENSMUST00000203609.3	3648	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	36.5714673238882	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTTTCATGGATTCCAT	1050	False	NA	2	True	AATAAA	-17	NA	48063527	48039328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_48041884_48043362_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
transcript_110545.nnic	chr6	-	3787	7	NNC	ENSMUSG00000057691.9	novel	3648	7	NA	NA	-94	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	47.316017959625	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTTTCATGGATTCCAT	956	False	NA	2	True	AATAAA	-17	NA	48063621	48039328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_48041884_48043362_48043489_48044102_48044295_48059087_48059202_48060026_48060154_48060239_48060540_48063248
transcript_110546.known	chr6	-	3651	7	FSM	ENSMUSG00000057691.9	ENSMUST00000073124.9	3651	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	32.8988348324577	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTTTCATGGATTCCAT	1050	False	NA	2	True	AATAAA	-17	NA	48063527	48039328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_48041887_48043362_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
transcript_110554.nic	chr6	-	1351	6	ISM	ENSMUSG00000057691.9	ENSMUST00000073124.9	3651	7	-40	3816	-40	0	5prime_fragment	FALSE	canonical	3	96	junction_1	16.8760184877832	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTCCTCCAGGCCCTTG	1010	False	NA	NA	False	NA	NA	NA	48063567	48043144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_48043489_48044102_48044295_48059087_48059202_48060026_48060109_48060239_48060540_48063248
transcript_110558.known	chr6	+	4000	18	FSM	ENSMUSG00000042810.15	ENSMUST00000203371.3	4000	18	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	17.5193417581865	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGGCCATTGGCTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	48372565	48393833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48372822_48379804_48379945_48380311_48380432_48380924_48381075_48382170_48382324_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
transcript_110561.known	chr6	+	4323	18	FSM	ENSMUSG00000042810.15	ENSMUST00000114572.9	4323	18	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	12.6595014032365	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAACATGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	48372799	48394400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48372822_48379817_48379945_48380311_48380432_48380924_48381075_48382167_48382324_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
transcript_110569.nic	chr6	+	3857	17	NIC	ENSMUSG00000042810.15	novel	6695	18	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	16.9036793332103	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGGCCATTGGCTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	48372571	48393833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_48372822_48380311_48380432_48380924_48381075_48382167_48382324_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
transcript_11057.known	chr10	-	1898	8	FSM	ENSMUSG00000035781.15	ENSMUST00000045628.15	1898	8	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_7	14.1608831731957	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCCCCGTGTTTGTC	9682	False	NA	-8	True	AATAAA	-15	NA	79752840	79745885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
transcript_110585.known	chr6	+	5055	1	FSM	ENSMUSG00000042810.15	ENSMUST00000204308.2	5055	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAGAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	48372563	48377618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48372600_48377600
transcript_110587.known	chr6	+	333	1	FSM	ENSMUSG00000095526.3	ENSMUST00000117571.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	48500451	48500784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48500500_48500800
transcript_110588.known	chr6	+	1789	4	FSM	ENSMUSG00000039347.8	ENSMUST00000040361.8	1789	4	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	1.24721912892465	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCTCTGCTCAGTT	6204	False	NA	27	True	AATAAA	-35	NA	48514548	48518735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48514789_48516157_48516206_48516973_48517101_48517361
transcript_110589.known	chr6	+	2913	3	FSM	ENSMUSG00000073096.12	ENSMUST00000114545.8	2913	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTCTTGGTCATGGTAT	8279	False	NA	14	True	NA	NA	NA	48531729	48547656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48531917_48533888_48534029_48545070
transcript_110590.known	chr6	+	374	2	FSM	ENSMUSG00000073096.12	ENSMUST00000153222.2	374	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCTGGATTCCATCCTG	8282	False	NA	NA	False	NA	NA	NA	48531732	48545260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48531917_48545070
transcript_110591.known	chr6	+	2674	2	FSM	ENSMUSG00000073096.12	ENSMUST00000101436.3	2674	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTCTTGGTCATGGTA	8288	False	NA	13	True	NA	NA	NA	48531738	48547655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48531828_48545070
transcript_110593.known	chr6	+	3138	3	FSM	ENSMUSG00000052751.17	ENSMUST00000118229.2	3138	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTGGTGGTGTTCTTTT	NA	False	NA	21	True	AATAAA	-19	NA	48570824	48576016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48570987_48571724_48571911_48573226
transcript_110594.known	chr6	+	3057	3	FSM	ENSMUSG00000052751.17	ENSMUST00000135151.3	3057	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	9.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTGGTGGTGTTCTTT	NA	False	NA	20	True	AATAAA	-18	NA	48570833	48576015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48570987_48571795_48571911_48573226
transcript_110596.known	chr6	+	4143	3	FSM	ENSMUSG00000007216.7	ENSMUST00000204095.3	4143	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	4.5	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGGCTTTCAGCG	NA	False	NA	NA	False	NA	NA	NA	48578996	48600161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48579055_48590111_48590194_48596158
transcript_110597.known	chr6	+	2959	2	FSM	ENSMUSG00000052751.17	ENSMUST00000163452.7	2959	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTGGTGGTGTTCTTT	NA	False	NA	20	True	AATAAA	-18	NA	48570816	48576015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48570987_48573226
transcript_110600.known	chr6	+	1384	2	FSM	ENSMUSG00000051124.7	ENSMUST00000054050.5	1384	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTATGATTGACTTCTTG	1289	False	NA	17	True	NA	NA	NA	48653062	48655633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48653189_48654375
transcript_110602.known	chr6	+	1540	7	FSM	ENSMUSG00000023367.15	ENSMUST00000101426.11	1540	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.11476292340825	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTGTATATTTTTAAAT	NA	False	NA	NA	False	TATAAA	-27	NA	48818445	48822803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_48818524_48819137_48819336_48819522_48819634_48820718_48820776_48820894_48821114_48821601_48821713_48822037
transcript_110603.known	chr6	-	1414	7	FSM	ENSMUSG00000029810.16	ENSMUST00000166247.8	1414	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.687184270936277	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAAAGGTGTGGGCTCTG	NA	False	NA	NA	False	GATAAA	-31	NA	48818308	48810751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_48811074_48811440_48811561_48812378_48812610_48812839_48812897_48813160_48813272_48815105_48815300_48817929
transcript_110605.known	chr6	+	3701	11	FSM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	6.96347614342147	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATCTCTGAGTAATTCA	NA	False	NA	NA	False	TATAAA	-13	NA	49013548	49035116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_49013727_49019700_49019854_49020930_49021075_49022238_49022413_49024227_49024387_49024669_49025036_49027343_49027443_49027957_49028061_49028751_49028961_49032554_49032649_49033094
transcript_110622.nnic	chr6	-	2176	8	NIC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	-491	1011	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	198.819988318836	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGGGGGTAAGGAAAGAGAA	NA	False	NA	NA	False	AATATA	-42	NA	49192382	49064050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49191230
transcript_110625.known	chr6	-	4345	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGCTTCTGTAGTATGT	NA	False	NA	-24	True	AATAAA	-15	NA	49191891	49062156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
transcript_110626.known	chr6	-	711	4	FSM	ENSMUSG00000029814.11	ENSMUST00000203680.2	711	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	219.654273803175	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTCCT	NA	False	NA	-3	True	ATTAAA	-22	NA	49191638	49144846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_49145040_49145403_49145453_49190200_49190262_49191230
transcript_110628.known	chr6	+	2819	4	FSM	ENSMUSG00000029815.13	ENSMUST00000128616.6	2819	4	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	29.2232783924049	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAATTTTGCTTTTAACT	295	False	NA	NA	False	TATAAA	-23	NA	49050728	49063685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_49051038_49052019_49052199_49059778_49059861_49061436
transcript_11063.known	chr10	-	3509	1	FSM	ENSMUSG00000035781.15	ENSMUST00000219206.2	3509	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	9761	False	NA	NA	False	GGGGCT	-19	NA	79752761	79749252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79749300_79752800
transcript_110632.known	chr6	+	2587	3	FSM	ENSMUSG00000029815.13	ENSMUST00000114500.3	2587	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	380.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAATTTTGCTTTTAACT	348	False	NA	NA	False	TATAAA	-23	NA	49050781	49063685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_49051038_49059778_49059861_49061436
transcript_110634.nnic	chr6	-	2168	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_7	180.182372889248	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4540	False	NA	-4	True	AATAAA	-15	NA	49241017	49220857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229730_49230043_49240771
transcript_110635.known	chr6	-	2090	9	FSM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	190.764866720788	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4612	False	NA	-4	True	AATAAA	-15	NA	49240945	49220857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229736_49230043_49240771
transcript_110638.known	chr6	-	1799	8	FSM	ENSMUSG00000029817.12	ENSMUST00000031841.9	1799	8	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_7	100.796420409392	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4593	False	NA	-8	True	AATAAA	-11	NA	49240964	49220861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
transcript_110639.nic	chr6	-	2449	8	NIC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	-50	0	intron_retention	FALSE	canonical	3	123	junction_7	139.301024799547	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4540	False	NA	-4	True	AATAAA	-15	NA	49241017	49220857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49230043_49240771
transcript_11064.known	chr10	+	4952	9	FSM	ENSMUSG00000019564.13	ENSMUST00000105377.8	4952	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	15.6104932657492	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAGAAAAAACT	1943	False	NA	NA	False	AATAAA	-35	NA	79762972	79790545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79763091_79766468_79767123_79767599_79767913_79782318_79782392_79784693_79784878_79785198_79785447_79786467_79786759_79787081_79787181_79787573
transcript_110641.known	chr6	-	3040	7	FSM	ENSMUSG00000029817.12	ENSMUST00000204818.2	3040	7	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_6	108.605427529608	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4590	False	NA	-8	True	AATAAA	-11	NA	49240967	49220861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_49221666_49221801_49221870_49222409_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
transcript_110643.nic	chr6	-	343	2	ISM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	-72	9088	-50	7231	5prime_fragment	FALSE	canonical	3	123	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATTGAATGGGGGAAA	4540	False	NA	NA	False	ATTAAA	-11	NA	49241017	49229945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_49230043_49240771
transcript_110644.known	chr6	-	3788	1	FSM	ENSMUSG00000029817.12	ENSMUST00000204013.2	3788	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAAAAATCCAG	4593	False	NA	NA	False	AATACA	-20	NA	49240964	49237176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_49237200_49241000
transcript_110646.known	chr6	+	2730	7	FSM	ENSMUSG00000047115.16	ENSMUST00000060561.15	2730	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	5.75663867972351	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAATTTGGAATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	49344672	49367473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49362306_49362390_49365750
transcript_110649.known	chr6	+	1304	6	FSM	ENSMUSG00000047115.16	ENSMUST00000121903.2	1304	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	14.4360659460949	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAGGGTCAGATTTTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	49344756	49366214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49365750
transcript_110650.nnic	chr6	+	3201	24	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-71	0	at_least_one_novel_splicesite	TRUE	canonical	2	90	junction_1	54.4319696453353	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	102	False	NA	NA	False	AATAAA	-22	NA	49372466	49446435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_110651.known	chr6	+	3237	24	FSM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	0	0	0	0	multi-exon	FALSE	canonical	2	108	junction_8	52.5929548855327	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	173	False	NA	NA	False	AATAAA	-22	NA	49372537	49446435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_110656.nnic	chr6	+	2667	22	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-71	0	at_least_one_novel_splicesite	FALSE	canonical	2	62	junction_6	55.816430581886	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	102	False	NA	NA	False	AATAAA	-22	NA	49372466	49446435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_110658.nnic	chr6	+	2768	22	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	53.746739604748	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	108	False	NA	NA	False	AATAAA	-22	NA	49372472	49446435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_110662.nnic	chr6	+	2391	20	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-71	0	at_least_one_novel_splicesite	FALSE	canonical	2	62	junction_6	56.8725064900417	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	102	False	NA	NA	False	AATAAA	-22	NA	49372466	49446435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_110663.nnic	chr6	+	2492	20	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	54.5748107857386	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	108	False	NA	NA	False	AATAAA	-22	NA	49372472	49446435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_11067.known	chr10	+	4892	9	FSM	ENSMUSG00000019564.13	ENSMUST00000105376.2	4892	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	10.5089247784919	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAAAAAAG	2145	False	NA	NA	False	AATAAA	-27	NA	79763174	79790537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79763235_79766468_79767123_79767599_79767913_79782318_79782392_79784693_79784878_79785198_79785447_79786461_79786759_79787081_79787181_79787573
transcript_110681.known	chr6	+	566	4	FSM	ENSMUSG00000029819.7	ENSMUST00000031843.7	566	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTTCTCAGTGAAGAAT	NA	False	NA	16	True	AATAAA	-18	NA	49799689	49806487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_49799782_49800577_49800766_49804468_49804550_49806282
transcript_110686.known	chr6	+	1896	14	FSM	ENSMUSG00000038388.15	ENSMUST00000036225.15	1896	14	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	465.128931670481	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCTGCGCATCAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	50087362	50175404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_50087435_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50153856_50153899_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_110695.known	chr6	+	2161	13	FSM	ENSMUSG00000038388.15	ENSMUST00000036236.15	2161	13	0	0	0	0	multi-exon	FALSE	canonical	3	978	junction_6	79.6350617225576	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGTTCAAGCATTTTGTAA	NA	False	NA	8	True	CATAAA	-5	NA	50087228	50175567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_50087445_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_110699.nic	chr6	+	2262	13	NIC	ENSMUSG00000038388.15	novel	1281	10	NA	NA	144	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	312.40984255017	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGATTCAATAAGGTTAA	NA	False	NA	NA	False	NA	NA	NA	50087530	50175307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_50088108_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_110705.known	chr6	+	2418	12	FSM	ENSMUSG00000038388.15	ENSMUST00000204545.3	2418	12	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	329.215822601587	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCTCTCTCTAGTCAAC	NA	False	NA	NA	False	GATAAA	-23	NA	50087257	50175919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_50087445_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_110714.known	chr6	-	2133	10	FSM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	6.09998988058258	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAGTTGGCTGTTCTAT	8766	False	NA	-2	True	ATTAAA	-16	NA	50238749	50184382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
transcript_110716.nic	chr6	+	1266	9	ISM	ENSMUSG00000038388.15	ENSMUST00000036236.15	2161	13	-79	17974	-71	0	5prime_fragment	FALSE	canonical	3	978	junction_6	69.3071740514645	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAGAAAAAGAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	50087149	50157593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_50087445_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570
transcript_11072.known	chr10	+	3911	10	FSM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	0	0	0	0	multi-exon	FALSE	canonical	3	1673	junction_5	33.7828943493195	1750	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAATGCTGCTGCTACTT	2286	False	NA	NA	False	NA	NA	NA	79795985	79806037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
transcript_110720.nic	chr6	+	1188	8	ISM	ENSMUSG00000038388.15	ENSMUST00000036236.15	2161	13	-24	18312	-16	-338	5prime_fragment	FALSE	canonical	3	978	junction_6	73.8876698448533	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAGAACTTCTCACAAGT	NA	False	NA	NA	False	NA	NA	NA	50087204	50157255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_50087445_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155
transcript_110732.known	chr6	-	2595	1	FSM	ENSMUSG00000029821.16	ENSMUST00000204700.2	2595	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAGAAAAATGAAG	8560	False	NA	NA	False	NA	NA	NA	50238955	50236360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_50236400_50239000
transcript_110733.known	chr6	+	3523	1	FSM	ENSMUSG00000038388.15	ENSMUST00000203415.2	3523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	50087259	50090782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_50087300_50090800
transcript_110735.nic	chr6	-	3539	24	NIC	ENSMUSG00000029822.16	novel	3307	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_11	3.96439732175821	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGTGGGTTACAAAAAAAA	NA	False	NA	NA	False	AATAAA	-21	NA	50433181	50273778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50310165_50310274_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50432804
transcript_110738.nnic	chr6	-	3176	23	NNC	ENSMUSG00000029822.16	novel	3307	22	NA	NA	25481	0	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_22	4.029847319873	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGTGGGTTACAAAAAAAA	NA	False	NA	NA	False	AATAAA	-21	NA	50407660	50273778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50407538
transcript_110740.nic	chr6	-	3431	23	NIC	ENSMUSG00000029822.16	novel	3307	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_22	3.69861488480697	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGTGGGTTACAAAAAAAA	NA	False	NA	NA	False	AATAAA	-21	NA	50433181	50273778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50432804
transcript_110749.known	chr6	-	3123	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	0	0	0	0	multi-exon	FALSE	canonical	3	4909	junction_2	335	1881	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACTCGCTGTCCAGGAA	NA	False	NA	NA	False	AATAAA	-15	NA	50543518	50539542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_50542366_50542471_50542649_50543395
transcript_110750.known	chr6	+	2544	4	FSM	ENSMUSG00000029832.17	ENSMUST00000005103.12	2544	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	2.05480466765633	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAAAAATATTTTATTC	NA	False	NA	NA	False	AATAAA	-17	NA	51409649	51435748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_51410394_51427946_51428124_51433573_51433658_51434209
transcript_110751.known	chr6	+	1125	3	FSM	ENSMUSG00000029832.17	ENSMUST00000160133.2	1125	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCATTGTTAACTTTGTT	NA	False	NA	NA	False	ATTAAA	-24	NA	51409728	51433856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_51410394_51427946_51428124_51433573
transcript_110753.known	chr6	-	1703	13	FSM	ENSMUSG00000004980.17	ENSMUST00000203954.3	1703	13	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	3043.32879243911	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
transcript_110755.known	chr6	-	1662	12	FSM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2567.02803044511	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_110760.known	chr6	-	1728	12	FSM	ENSMUSG00000004980.17	ENSMUST00000114459.8	1728	12	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_11	2433.70552759395	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446806	51439739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
transcript_110761.known	chr6	-	1542	11	FSM	ENSMUSG00000004980.17	ENSMUST00000204158.3	1542	11	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2968.11001312283	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_110766.nic	chr6	-	1590	11	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	2039.79651926363	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446886	51438100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_110768.known	chr6	-	1638	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_110772.known	chr6	-	1647	10	FSM	ENSMUSG00000004980.17	ENSMUST00000069949.13	1647	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	2676.86493431088	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGCACTGCTACAACT	NA	False	NA	NA	False	AATAAA	-16	NA	51446874	51437911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_51438414_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_110775.known	chr6	-	1518	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_110779.nic	chr6	-	970	8	ISM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	-114	1749	-2	123	5prime_fragment	FALSE	canonical	3	5712	junction_7	765.699626725354	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGGATATGGTGGTGGA	NA	False	NA	NA	False	NA	NA	NA	51446866	51441488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_110782.nic	chr6	-	759	5	ISM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	-122	3579	0	-521	5prime_fragment	FALSE	canonical	3	5712	junction_4	951.422619028999	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGGAAGTCCAAAGTTCT	NA	False	NA	NA	False	CATAAA	-45	NA	51446874	51443318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_110783.nic	chr6	-	581	5	ISM	ENSMUSG00000004980.17	ENSMUST00000114459.8	1728	12	-19	3834	0	-776	5prime_fragment	FALSE	canonical	3	874	junction_4	3455.50765988154	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATACTATTGAAATAATT	NA	False	NA	5	True	NA	NA	NA	51446825	51443573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
transcript_110784.nic	chr6	-	589	4	ISM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	-117	3834	-5	-776	5prime_fragment	FALSE	canonical	3	5712	junction_3	1063.54668705965	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATACTATTGAAATAATT	NA	False	NA	5	True	NA	NA	NA	51446869	51443573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_51443686_51443885_51444033_51444164_51444276_51446650
transcript_110788.known	chr6	+	1889	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	0	0	0	0	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447509	51460684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
transcript_110791.known	chr6	+	308	2	FSM	ENSMUSG00000029836.16	ENSMUST00000153699.2	308	2	0	0	0	0	multi-exon	FALSE	canonical	3	2485	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTGGACATGGTTGT	NA	False	NA	NA	False	NA	NA	NA	51447656	51449040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_51447720_51448795
transcript_110794.known	chr6	+	1217	2	FSM	ENSMUSG00000029836.16	ENSMUST00000156463.2	1217	2	0	0	0	0	multi-exon	FALSE	canonical	3	2482	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAACAAAATGGAAAGA	NA	False	NA	NA	False	TTTAAA	-39	NA	51447642	51452221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_51448849_51452210
transcript_1108.known	chr1	+	2874	1	FSM	ENSMUSG00000026113.18	ENSMUST00000193024.2	2874	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAATAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	37338973	37341847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37339000_37341800
transcript_110800.known	chr6	+	2480	7	FSM	ENSMUSG00000038301.16	ENSMUST00000049152.15	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	298	junction_5	39.9433626804532	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCGATTTCTTACTT	NA	False	NA	NA	False	ATTAAA	-24	NA	51500880	51567659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_51501015_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
transcript_110807.known	chr6	+	2464	7	FSM	ENSMUSG00000038301.16	ENSMUST00000179365.8	2464	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	112.931272118144	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAACTTTGTTCGAT	NA	False	NA	NA	False	ATTAAA	-15	NA	51521502	51567650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_51521630_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
transcript_110811.known	chr6	+	968	7	FSM	ENSMUSG00000038301.16	ENSMUST00000114439.8	968	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	127.070081276261	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTAAAGTGGTGGGGT	NA	False	NA	NA	False	AATAGA	-39	NA	51521503	51566052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_51521733_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
transcript_110815.known	chr6	-	3382	13	FSM	ENSMUSG00000059182.9	ENSMUST00000204778.3	3382	13	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_9	27.4919180043073	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTATGATGCTAATAATT	828	False	NA	-5	True	AATAAA	-18	NA	51989529	51834401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
transcript_110819.nnic	chr6	-	1719	13	NNC	ENSMUSG00000059182.9	novel	3382	13	NA	NA	-18	-2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	141.475753713804	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGATGACTTAGCCTGG	810	False	NA	-9	True	AATAAA	-16	NA	51989547	51836147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_51836616_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
transcript_110822.nic	chr6	-	836	7	ISM	ENSMUSG00000059182.9	ENSMUST00000204778.3	3382	13	-152	51936	-152	-34886	5prime_fragment	FALSE	canonical	3	457	junction_3	29.0311135776008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATGGAAAGAAAGATTGCT	676	False	NA	NA	False	AATAGA	-37	NA	51989681	51886337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
transcript_110823.known	chr6	-	1583	13	FSM	ENSMUSG00000059182.9	ENSMUST00000078214.8	1583	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	147.952390052416	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	862	False	NA	-7	True	AATAAA	-18	NA	51989495	51836145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980715_51989314
transcript_110826.nnic	chr6	+	615	5	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	55.1106840821269	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	769	False	NA	NA	False	NA	NA	NA	52079919	52089508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_52080017_52082951_52083012_52083344_52083500_52083750_52083877_52089331
transcript_110831.nnic	chr6	+	460	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	63.3368420080726	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	769	False	NA	NA	False	NA	NA	NA	52079919	52089508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_52080017_52082951_52083012_52083750_52083877_52089331
transcript_110836.known	chr6	+	408	3	FSM	ENSMUSG00000085412.8	ENSMUST00000155758.2	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	88.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCAGAGAAGTTGCCAA	832	False	NA	NA	False	CATAAA	-25	NA	52079982	52089168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_52080017_52083750_52083877_52088920
transcript_110840.known	chr6	+	391	3	FSM	ENSMUSG00000085412.8	ENSMUST00000125374.8	391	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	38	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	778	False	NA	NA	False	NA	NA	NA	52079928	52089508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_52080017_52083750_52083877_52089331
transcript_110845.known	chr6	+	511	3	FSM	ENSMUSG00000085412.8	ENSMUST00000189071.7	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	103.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCCCCGATCGAATGGAA	823	False	NA	NA	False	AAAAAG	-27	NA	52079973	52090664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_52080017_52083750_52083877_52090322
transcript_110850.known	chr6	-	2043	3	FSM	ENSMUSG00000029844.10	ENSMUST00000120363.2	2043	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	5.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTATGCCTAAGCATCTT	NA	False	NA	-11	True	AATAAA	-14	NA	52135297	52132574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52134070_52134546_52134642_52134844
transcript_110851.known	chr6	+	253	2	FSM	ENSMUSG00000087658.3	ENSMUST00000159006.2	253	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGATGTTTGAAACAAATG	NA	False	NA	-40	True	NA	NA	NA	52135503	52139000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_52135667_52138910
transcript_110852.known	chr6	-	2251	2	FSM	ENSMUSG00000029844.10	ENSMUST00000000964.6	2251	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTAAGCATCTTGTGTA	NA	False	NA	-6	True	AATAAA	-19	NA	52135297	52132569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52134070_52134546
transcript_110853.known	chr6	-	1877	2	FSM	ENSMUSG00000038253.7	ENSMUST00000048794.7	1877	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTCTGCTTTTCTGT	9821	False	NA	NA	False	NA	NA	NA	52181567	52178733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52179812_52180768
transcript_110854.known	chr6	-	2565	2	FSM	ENSMUSG00000000938.12	ENSMUST00000125581.2	2565	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTAATTTCACCTCTT	9663	False	NA	-13	True	AATAAA	-15	NA	52211919	52208176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52209761_52210938
transcript_110855.known	chr6	-	1436	2	FSM	ENSMUSG00000000938.12	ENSMUST00000121043.2	1436	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACCTGGCTGGTTGAAA	8346	False	NA	NA	False	NA	NA	NA	52217834	52208901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52209761_52217257
transcript_110856.known	chr6	-	1045	2	FSM	ENSMUSG00000000938.12	ENSMUST00000142611.2	1045	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCAATGGTGCAAGGA	8405	False	NA	NA	False	NA	NA	NA	52217775	52209061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52209761_52217429
transcript_110857.known	chr6	-	2287	2	FSM	ENSMUSG00000038210.11	ENSMUST00000048026.10	2287	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTTCAATACTCCTTT	8158	False	NA	NA	False	AATAAA	-15	NA	52222790	52219085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52220573_52221990
transcript_110858.known	chr6	-	213	1	FSM	ENSMUSG00000059159.7	ENSMUST00000118230.2	213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	555	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCCTCTGCGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	52323927	52323714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52323700_52323900
transcript_110862.known	chr6	-	1825	8	FSM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_5	85.7178570684555	513	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGAGCTTTTTGTTTT	2839	False	NA	-1	True	AATAAA	-20	NA	52617374	52523212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
transcript_110876.known	chr6	+	3285	18	FSM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_12	67.9651854701079	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTGTAAATGATTCG	NA	False	NA	NA	False	AATAAA	-27	NA	52690713	52743765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
transcript_110889.nic	chr6	+	1958	14	ISM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	-22	13444	-22	-8871	5prime_fragment	FALSE	canonical	3	527	junction_12	75.3135457770698	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCTGGCTTCATATTTGG	NA	False	NA	NA	False	AATAAA	-1	NA	52690691	52730321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289
transcript_110890.nic	chr6	+	1928	13	ISM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	-22	15568	-22	8408	5prime_fragment	FALSE	canonical	3	527	junction_12	74.4999533929757	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCATAGGCTTGGCTCA	NA	False	NA	NA	False	NA	NA	NA	52690691	52728197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069
transcript_110892.nic	chr6	+	1753	12	ISM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	-22	20057	-22	3919	5prime_fragment	FALSE	canonical	3	543	junction_4	72.7204542258223	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGCTGAGAAAATAGAAAAG	NA	False	NA	NA	False	ACTAAA	-5	NA	52690691	52723708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654
transcript_110898.nic	chr6	+	1008	7	ISM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	-22	29608	-22	3917	5prime_fragment	FALSE	canonical	3	543	junction_4	67.225367235888	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGTCCTTTTCTAGTGT	NA	False	NA	NA	False	NA	NA	NA	52690691	52714157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066
transcript_1109.known	chr1	+	5691	26	FSM	ENSMUSG00000026113.18	ENSMUST00000027287.11	5691	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	3.73652244741016	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTCTCACTTGATTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	37338971	37449817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37339200_37396423_37396486_37396895_37397106_37397588_37397634_37403190_37403310_37405243_37405361_37405619_37405700_37405950_37406063_37406837_37406929_37407357_37407506_37408438_37408570_37410782_37410888_37411391_37411501_37413352_37413371_37416658_37416843_37417921_37418141_37419002_37419142_37422419_37422453_37426778_37426952_37427867_37427992_37428730_37428858_37429129_37429271_37432023_37432122_37435150_37435264_37437846_37438002_37447207
transcript_110900.nic	chr6	+	640	5	ISM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	-22	33559	-22	0	5prime_fragment	FALSE	canonical	3	543	junction_4	66.6408283261845	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATTGTTAAAGTTGATA	NA	False	NA	NA	False	AATACA	-33	NA	52690691	52710206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175
transcript_110901.known	chr6	+	2628	4	FSM	ENSMUSG00000004535.13	ENSMUST00000128173.2	2628	4	0	0	0	0	multi-exon	FALSE	canonical	3	617	junction_3	47.3380279362046	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATCGTTACATTCAG	NA	False	NA	NA	False	CATAAA	-15	NA	52690747	52708528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265
transcript_110902.known	chr6	-	2203	5	FSM	ENSMUSG00000063568.12	ENSMUST00000074541.6	2203	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAACCTTTTCCCCCGT	NA	False	NA	NA	False	NA	NA	NA	53045616	52745781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_52747366_52754519_52754690_52789087_52789285_52870983_52871057_53045437
transcript_110904.known	chr6	+	916	2	FSM	ENSMUSG00000053007.10	ENSMUST00000204861.3	916	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCAGGCCAGTAAGTGT	NA	False	NA	NA	False	AATAAA	-26	NA	53264302	53265692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_53264359_53264832
transcript_110911.known	chr6	+	2418	13	FSM	ENSMUSG00000004633.18	ENSMUST00000046856.14	2418	13	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	4.03026742978125	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTTGTCCCCTTCTTGCT	NA	False	NA	NA	False	AATAGA	-31	NA	54016557	54277706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_54017141_54150448_54150488_54171010_54171067_54192646_54192679_54195508_54195623_54197401_54197688_54250060_54250139_54263078_54263164_54267251_54267426_54270022_54270101_54272768_54272907_54275029_54275136_54277057
transcript_110917.known	chr6	-	4810	8	FSM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	7.92824967172092	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGAGCCTCTTGTTTGT	NA	False	NA	0	True	AATAAA	-17	NA	54543474	54482874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744_54499940_54502493_54502697_54511397_54511580_54525208_54525369_54543224
transcript_110921.known	chr6	+	6739	14	FSM	ENSMUSG00000005225.16	ENSMUST00000119706.8	6739	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_3	58.2353925611012	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGGGTTTTGCTTAAC	NA	False	NA	32	True	AATAAA	-42	NA	54572095	54622824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_54572457_54590076_54590194_54592199_54592356_54593617_54593743_54596178_54596338_54597256_54597298_54599105_54599264_54601059_54601217_54601537_54601624_54605830_54605890_54606804_54606936_54607488_54607560_54612694_54612757_54617768
transcript_110924.known	chr6	-	2754	5	FSM	ENSMUSG00000038074.17	ENSMUST00000155047.6	2754	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	9.78199877325692	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTTTTGTACATGTGCAT	NA	False	NA	-1	True	AATAAA	-18	NA	54570133	54554589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_54556672_54562787_54562916_54563980_54564071_54566257_54566410_54569831
transcript_110925.known	chr6	-	2694	4	FSM	ENSMUSG00000038074.17	ENSMUST00000046520.13	2694	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	2.16024689946929	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTGTACATGTGCATA	NA	False	NA	0	True	AATAAA	-19	NA	54570162	54554588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_54556672_54562787_54562916_54566257_54566410_54569831
transcript_110927.known	chr6	+	5303	3	FSM	ENSMUSG00000038065.14	ENSMUST00000190641.7	5303	3	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_2	0.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTTGTCGTCTTTACTC	NA	False	NA	7	True	ATTAAA	-19	NA	54658608	54680836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_54658917_54665990_54666114_54675964
transcript_110932.known	chr6	+	645	2	FSM	ENSMUSG00000038065.14	ENSMUST00000185518.2	645	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACACTTGTGCCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	54658786	54666505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_54658917_54665990
transcript_110933.nnic	chr6	+	1682	5	NNC	ENSMUSG00000058446.15	novel	5886	5	NA	NA	7336	-3768	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	273.671792481432	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATCTAATGGTTAAGAAT	NA	False	NA	12	True	AATAAA	-14	NA	54801768	54866717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_54801890_54840884_54840981_54855333_54855440_54861749_54861832_54865440
transcript_110934.nic	chr6	-	4339	12	NIC	ENSMUSG00000038058.15	novel	4064	12	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	7.53723539206332	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTTTCTAATGGCCAAG	NA	False	NA	NA	False	AATAAA	-15	NA	54941745	54900933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_54901995_54905019_54905104_54907160_54907245_54910544_54910629_54911379_54911464_54914338_54914423_54915122_54915207_54916288_54916373_54920115_54921941_54924933_54925109_54926416_54926739_54941377
transcript_110935.known	chr6	-	4315	12	FSM	ENSMUSG00000038058.15	ENSMUST00000060655.15	4315	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	5.88175495258975	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTTTCTAATGGCCAAG	NA	False	NA	NA	False	AATAAA	-15	NA	54949597	54900933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_54901995_54905019_54905104_54907160_54907245_54910544_54910629_54911379_54911464_54914338_54914423_54915122_54915207_54916288_54916373_54920115_54921941_54924933_54925109_54926416_54926739_54949253
transcript_110940.known	chr6	-	3960	4	FSM	ENSMUSG00000002797.10	ENSMUST00000131475.2	3960	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	27.1947707391615	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAACGAAGAAAATAAGCAG	2700	False	NA	NA	False	TTTAAA	-26	NA	54969935	54959564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_54962987_54963817_54963954_54966396_54966543_54969679
transcript_110941.known	chr6	-	686	4	FSM	ENSMUSG00000002797.10	ENSMUST00000002874.8	686	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	68.8524993494547	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCCGTGGGTTCTCCT	2943	False	NA	-2	True	ATTAAA	-32	NA	54969692	54962632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_54962987_54963817_54963954_54966484_54966543_54969554
transcript_110942.known	chr6	-	431	4	FSM	ENSMUSG00000002797.10	ENSMUST00000204301.3	431	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	52.7320269538984	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATGAGTATAAAGGAAAG	2789	False	NA	NA	False	ATTAAA	-12	NA	54969846	54962916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_54962987_54963817_54963954_54966484_54966543_54969679
transcript_110959.known	chr6	+	2380	17	FSM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	747.261037786495	6004	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55014991	55056485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045154_55046325_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
transcript_111.known	SIRV3	+	1807	2	FSM	SIRV3A	SIRV302	1807	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1963	7822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_+_2006_6057
transcript_1110.known	chr1	-	3863	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_2	27.5	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCTGTTTCAAGATTA	6272	False	NA	-3	True	NA	NA	NA	37469184	37456164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
transcript_111007.known	chr6	+	4270	18	FSM	ENSMUSG00000038022.12	ENSMUST00000053094.8	4270	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	4.83570915636814	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGTGTGCTAAGGGTC	NA	False	NA	NA	False	ATTAAA	-16	NA	55180367	55297207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_55180555_55188234_55188355_55193491_55193728_55195206_55195454_55200982_55201354_55232595_55232652_55237519_55237627_55239703_55239821_55240760_55240850_55253538_55253641_55255031_55255096_55256069_55256136_55261730_55261799_55274672_55274737_55277927_55278090_55285139_55285321_55286246_55286320_55295247
transcript_111009.known	chr6	+	2211	11	FSM	ENSMUSG00000038022.12	ENSMUST00000204842.3	2211	11	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	5.45893762558247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAACCTGATATGCCTTC	NA	False	NA	NA	False	ATTAAA	-23	NA	55180367	55255610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_55180555_55188234_55188355_55193491_55193728_55195206_55195454_55200982_55201354_55232595_55232652_55237519_55237627_55239703_55239821_55240760_55240850_55253538_55253641_55255031
transcript_111010.known	chr6	-	494	5	FSM	ENSMUSG00000091625.9	ENSMUST00000170382.5	494	5	0	0	0	0	multi-exon	TRUE	canonical	3	1056	junction_2	222.021395365402	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGATTTGATTTATTATG	NA	False	NA	NA	False	AATAAA	-16	NA	56681677	56678047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56680298_56680395_56681607
transcript_111011.known	chr6	-	757	4	FSM	ENSMUSG00000091625.9	ENSMUST00000175865.6	757	4	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_2	255.422525762053	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGATTTGATTTATTA	NA	False	NA	NA	False	AATAAA	-14	NA	56681662	56678049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_56678275_56679080_56679154_56679990_56680395_56681607
transcript_111012.known	chr6	-	366	4	FSM	ENSMUSG00000091625.9	ENSMUST00000177144.2	366	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	746.5458235545	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTTGTCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	56681641	56678107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_56678275_56679080_56679154_56680302_56680395_56681607
transcript_111014.known	chr6	-	416	4	FSM	ENSMUSG00000091625.9	ENSMUST00000203958.2	416	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	641.947211398431	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGATTTGATTTATTATG	NA	False	NA	NA	False	AATAAA	-16	NA	56681695	56678047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56681607
transcript_111015.known	chr6	+	6670	16	FSM	ENSMUSG00000029787.11	ENSMUST00000031805.11	6670	16	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	11.3247025960459	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGGCTATTGATCTCCTA	NA	False	NA	43	True	AATAAA	-21	NA	56691911	56738897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_56692200_56700460_56700582_56702060_56702147_56703235_56703308_56705172_56705263_56705581_56705649_56706704_56706746_56707626_56707666_56712347_56712418_56713422_56713962_56718353_56718489_56720316_56720537_56723265_56723384_56730349_56730404_56730822_56730912_56734256
transcript_111025.known	chr6	+	1414	1	FSM	ENSMUSG00000029787.11	ENSMUST00000205188.2	1414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	56691883	56693297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_56691900_56693300
transcript_111026.known	chr6	+	1614	10	FSM	ENSMUSG00000029787.11	ENSMUST00000177249.3	1614	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	31.3041629385606	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTATATTGTAATTG	NA	False	NA	NA	False	NA	NA	NA	56691922	56714142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_56692200_56700460_56700582_56702060_56702147_56703235_56703308_56705172_56705263_56705581_56705649_56706704_56706746_56707626_56707697_56712347_56712418_56713422
transcript_111029.known	chr6	-	3816	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	4.02768199119819	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGGTTTTTTGGTTTT	9703	False	NA	0	True	AATAAA	-17	NA	56774721	56754508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774443
transcript_111030.known	chr6	-	3868	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114321.2	3868	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	71.2569684701472	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTTGGTTTTTTGGTTT	9626	False	NA	-1	True	AATAAA	-16	NA	56774798	56754509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774467
transcript_111040.known	chr6	+	3009	10	FSM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_6	57.9369602069757	1030	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTTTATGGTATT	NA	False	NA	36	True	CATAAA	-14	NA	56809043	56856343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_56809413_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
transcript_11105.known	chr10	-	2225	11	FSM	ENSMUSG00000013858.15	ENSMUST00000052885.14	2225	11	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_4	19.7891384350103	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGTGTAGTTCCTCAGCTC	NA	False	NA	-17	True	AATAAA	-18	NA	79820164	79812951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79813688_79813796_79813897_79814021_79814155_79814225_79814310_79814381_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329_79815588_79819743
transcript_111061.known	chr6	-	1519	10	FSM	ENSMUSG00000029780.15	ENSMUST00000101367.9	1519	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	89.8419737478734	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	9834	False	NA	0	True	AATAAA	-26	NA	56878871	56859384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56878822
transcript_111062.known	chr6	-	1067	10	FSM	ENSMUSG00000029780.15	ENSMUST00000152447.9	1067	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_9	88.9986821930458	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGTGAGAAGACTTCCCC	1317	False	NA	NA	False	TATAAA	-6	NA	56900804	56859935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56900656
transcript_111067.known	chr6	-	1676	9	FSM	ENSMUSG00000029780.15	ENSMUST00000031793.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	16.5486970786222	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	1204	False	NA	0	True	AATAAA	-26	NA	56900917	56859384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56900656
transcript_111072.known	chr6	-	5560	7	FSM	ENSMUSG00000037826.6	ENSMUST00000042766.6	5560	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	2.3629078131263	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAAATTCCAGTTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	57512411	57483486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_57487835_57490926_57491062_57491958_57492104_57492577_57492744_57499733_57499835_57501721_57502240_57512264
transcript_111076.known	chr6	-	3573	2	FSM	ENSMUSG00000043162.8	ENSMUST00000053386.6	3573	2	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATTCTTTGAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	57669063	57663560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_57666864_57668793
transcript_111077.known	chr6	+	2509	9	FSM	ENSMUSG00000062190.13	ENSMUST00000050077.15	2509	9	0	0	0	0	multi-exon	TRUE	canonical	3	58	junction_1	7.80924932371864	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTATCCATAGCCCTTCA	NA	False	NA	NA	False	TATAAA	-25	NA	57679620	57715467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_57680249_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
transcript_111080.known	chr6	-	769	6	FSM	ENSMUSG00000037788.15	ENSMUST00000204878.3	769	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	6.01331855134916	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAACTTACCCACCCCCT	NA	False	NA	NA	False	NA	NA	NA	57802135	57731547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_57731662_57739419_57739557_57751695_57751774_57766961_57767021_57785520_57785678_57801911
transcript_111081.known	chr6	-	2919	5	FSM	ENSMUSG00000037788.15	ENSMUST00000114297.5	2919	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0.866025403784439	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCTGTGATTTTTTTGG	NA	False	NA	-2	True	AATAAA	-14	NA	57802144	57729249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_57731662_57739419_57739557_57751695_57751774_57766961_57767021_57801911
transcript_111082.known	chr6	+	438	1	FSM	ENSMUSG00000071419.8	ENSMUST00000121788.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAGGCCAATAAAGACTGG	NA	False	NA	-20	True	NA	NA	NA	57994490	57994928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_57994500_57994900
transcript_111085.nnic	chr6	+	2239	17	NNC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	-44	-62	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	52.4486355875918	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCAGTGTTCTTTTCTTC	NA	False	NA	14	True	ATTAAA	-21	NA	58572915	58669434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_58573003_58573993_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_111091.known	chr6	+	5717	16	FSM	ENSMUSG00000029802.14	ENSMUST00000031822.13	5717	16	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	36.1961323900773	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTCTGTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	58573655	58672661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_111092.known	chr6	+	2178	16	FSM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	24.9849732617205	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58617548	58669496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_111094.known	chr6	+	603	5	FSM	ENSMUSG00000029802.14	ENSMUST00000145161.8	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	30.8007710942437	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGATTCTAAGGTATGAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	58617544	58642229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088
transcript_111099.nic	chr6	+	5115	25	NIC	ENSMUSG00000029804.18	novel	3596	23	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	7.34551544973001	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTGTATTGTAATTGTG	NA	False	NA	13	True	AATAAA	-21	NA	58808461	58897383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_58808918_58820588_58820844_58831857_58832018_58832722_58832800_58833577_58833800_58834679_58834772_58835937_58836069_58837236_58837398_58839957_58840035_58845626_58845752_58847138_58847199_58850718_58850831_58851195_58851386_58853473_58853638_58853752_58853867_58861934_58861959_58862052_58862143_58864392_58864564_58865604_58865749_58867052_58867220_58871032_58871100_58871526_58871610_58893396_58893581_58893766_58893870_58895697
transcript_111103.known	chr6	-	5786	18	FSM	ENSMUSG00000037709.14	ENSMUST00000089860.12	5786	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	2.83331637148054	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAGAA	NA	False	NA	NA	False	NA	NA	NA	59001534	58909074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_58912697_58916280_58916383_58917105_58917303_58921105_58921190_58923024_58923121_58930434_58930519_58931186_58931408_58932200_58932283_58933021_58933161_58933638_58933844_58942045_58942194_58950139_58950183_58951015_58951093_58960873_58961061_58964140_58964318_58966728_58966771_58980449_58980492_59001296
transcript_111107.known	chr6	+	3007	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGACTTTTTCTGAA	NA	False	NA	9	True	NA	NA	NA	59185854	59189018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_59186167_59186323
transcript_111112.known	chr6	-	1280	6	FSM	ENSMUSG00000025889.14	ENSMUST00000114268.5	1280	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	4.2614551505325	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCTTTCCTGGTTCCTT	7574	False	NA	-6	True	AATAAA	-20	NA	60805988	60708562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60805707
transcript_111113.known	chr6	-	1407	4	FSM	ENSMUSG00000025889.14	ENSMUST00000203177.2	1407	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.68178700572909	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTTTGAGTATGTTAT	7706	False	NA	NA	False	NA	NA	NA	60805856	60791674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_60792744_60795307_60795350_60804464_60804612_60805707
transcript_111115.known	chr6	-	3387	2	FSM	ENSMUSG00000097924.3	ENSMUST00000180421.3	3387	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTATTTGCAGTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	61157254	61150966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_61154067_61156967
transcript_111116.known	chr6	+	2121	1	FSM	ENSMUSG00000073043.6	ENSMUST00000101351.6	2121	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCGTTGTCACGTGTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	64706108	64708229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_64706100_64708200
transcript_111117.nic	chr6	+	4536	24	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	279	junction_1	39.2537188345773	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATTTGTTAATTATTGTA	1665	False	NA	NA	False	AATAAA	-16	NA	65019530	65092582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
transcript_111118.nic	chr6	+	4999	24	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	279	junction_1	39.2537188345773	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGTAATGGTTTTT	1665	False	NA	28	True	AATAAA	-30	NA	65019530	65093045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
transcript_111119.known	chr6	+	5168	24	FSM	ENSMUSG00000029920.10	ENSMUST00000031984.9	5168	24	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	41.9367603834104	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGTAATGGTTTTT	1727	False	NA	28	True	AATAAA	-30	NA	65019592	65093045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
transcript_11113.known	chr10	-	1767	10	FSM	ENSMUSG00000013858.15	ENSMUST00000124536.2	1767	10	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_9	17.0257611638915	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGAGAGGGGCTGGTGG	NA	False	NA	NA	False	NA	NA	NA	79819874	79813191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79813688_79813796_79813897_79814021_79814155_79814225_79814440_79814526_79814628_79814701_79814825_79814931_79815043_79815124_79815225_79815329_79815588_79819743
transcript_111133.nic	chr6	+	1145	9	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	-36	-62	combination_of_known_junctions	FALSE	canonical	3	279	junction_1	43.9936074901798	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAAGAAGTTGCAAGGA	1665	False	NA	NA	False	NA	NA	NA	65019530	65051779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745
transcript_111134.nic	chr6	+	1207	9	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	279	junction_1	43.9936074901798	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATTTCCGTGAAACCA	1665	False	NA	NA	False	AATAAA	-9	NA	65019530	65051841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745
transcript_111135.nic	chr6	+	1266	9	ISM	ENSMUSG00000029920.10	ENSMUST00000203756.3	2821	10	-222	6738	-10	-62	5prime_fragment	FALSE	canonical	3	261	junction_1	49.4646338306471	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAAGAAGTTGCAAGGA	1775	False	NA	NA	False	NA	NA	NA	65019640	65051779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745
transcript_111136.nic	chr6	+	1285	9	ISM	ENSMUSG00000029920.10	ENSMUST00000203756.3	2821	10	-179	6676	33	0	5prime_fragment	FALSE	canonical	3	261	junction_1	49.4646338306471	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATTTCCGTGAAACCA	1818	False	NA	NA	False	AATAAA	-9	NA	65019683	65051841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745
transcript_111140.nnic	chr6	+	1050	7	NNC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	0	28	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_6	142.526508255677	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGTGCTGAATGTTTGG	1727	False	NA	NA	False	NA	NA	NA	65019592	65044450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65044265
transcript_111141.nic	chr6	+	915	7	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	-3	-2826	combination_of_known_junctions	FALSE	canonical	3	279	junction_1	50.7261164380725	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGAAAGTATTGTGTTGA	1724	False	NA	NA	False	NA	NA	NA	65019589	65049015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968
transcript_111149.known	chr6	+	600	3	FSM	ENSMUSG00000029920.10	ENSMUST00000205118.3	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	73	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTTGGAAATCTCCA	1785	False	NA	-67	True	AATAAA	-25	NA	65019650	65021115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_65019715_65020189_65020430_65020819
transcript_111152.known	chr6	+	734	3	FSM	ENSMUSG00000029920.10	ENSMUST00000204696.3	734	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	64	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAGCAGAGCATTATGGA	1954	False	NA	5	True	AATAAA	-15	NA	65019819	65021187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_65019946_65020189_65020430_65020819
transcript_111160.known	chr6	+	2155	15	FSM	ENSMUSG00000029913.15	ENSMUST00000031976.14	2155	15	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	23.473389188611	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65755971	65913360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
transcript_111167.nnic	chr6	+	1979	14	NNC	ENSMUSG00000029913.15	novel	2155	15	NA	NA	18403	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	43.8327914861403	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65774487	65913360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_65774602_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
transcript_111169.known	chr6	+	1488	11	FSM	ENSMUSG00000029913.15	ENSMUST00000031973.13	1488	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	49.012753442344	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATTCAAAATAGA	NA	False	NA	NA	False	NA	NA	NA	65756008	65913282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
transcript_11117.known	chr10	+	2460	7	FSM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	7.8616509433805	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTGGCACACGCCTT	1769	False	NA	NA	False	NA	NA	NA	79824417	79831896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261_79829409_79830184
transcript_111177.known	chr6	+	1938	3	FSM	ENSMUSG00000029913.15	ENSMUST00000173538.2	1938	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	4.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACCAAACTAAACCAAAC	NA	False	NA	NA	False	NA	NA	NA	65756005	65809914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_65756178_65771283_65771368_65808232
transcript_111178.known	chr6	+	7557	6	FSM	ENSMUSG00000029910.15	ENSMUST00000116605.8	7557	6	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_5	83.3273064487266	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATGTGTATGTGTGGT	NA	False	NA	NA	False	TATAAA	-21	NA	66512373	66524204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
transcript_111180.known	chr6	+	1725	5	FSM	ENSMUSG00000029910.15	ENSMUST00000101343.2	1725	5	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_4	68.2692280606717	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAATCAAGCTTTAAAA	NA	False	NA	19	True	AATAAA	-22	NA	66512451	66517975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754
transcript_111184.known	chr6	+	1680	5	FSM	ENSMUSG00000029910.15	ENSMUST00000125430.2	1680	5	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_4	89.7646227642048	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAATTAAGCCTTGT	NA	False	NA	48	True	TATAAA	-25	NA	66512408	66518004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
transcript_111185.known	chr6	-	423	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2743	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCCAGTGTATTTGTAAA	NA	False	NA	-60	True	NA	NA	NA	66852727	66852304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_66852300_66852700
transcript_111186.known	chr6	+	680	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114224.8	680	5	0	0	0	0	multi-exon	FALSE	canonical	2	34	junction_3	133.478462682187	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCTTGTCTTTACAAAATA	NA	False	NA	-78	True	NA	NA	NA	66873439	66994832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_66873500_66891436_66891495_66920808_66920867_66992708_66992828_66994447
transcript_111192.known	chr6	+	1876	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114225.8	1876	4	0	0	0	0	multi-exon	FALSE	canonical	2	75	junction_1	120.748590974066	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCCTGGGCTCTGAGCG	NA	False	NA	NA	False	ACTAAA	-21	NA	66873423	66996070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_66873500_66891436_66891495_66992708_66992828_66994447
transcript_111196.nnic	chr6	+	694	3	NNC	ENSMUSG00000036402.14	novel	748	4	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	2	92	junction_1	138.5	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTCAGTCAAAAACC	NA	False	NA	3	True	ATTAAA	-9	NA	66873382	66994913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_66873500_66992716_66992828_66994447
transcript_1112.known	chr1	+	1094	6	FSM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	76.7739539166767	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGACTGTTTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	37469219	37478065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_111200.known	chr6	-	1223	4	FSM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	3.77123616632825	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTTCTCAACGTGTGGT	NA	False	NA	-7	True	AATAAA	-19	NA	67014390	67012079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_67012757_67013661_67013900_67013993_67014096_67014184
transcript_111202.known	chr6	+	698	2	FSM	ENSMUSG00000087231.8	ENSMUST00000147548.3	698	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGAGAGTGTTGACAGT	NA	False	NA	NA	False	NA	NA	NA	67013588	67040745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67013920_67040378
transcript_111204.known	chr6	+	15474	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	0	0	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATGGTTTATATTTTTG	5485	False	NA	NA	False	AATAAA	-17	NA	67243607	67274720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
transcript_111206.known	chr6	+	1617	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	0	0	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTCACTTCATTTGT	5872	False	NA	37	True	AATATA	-25	NA	67243994	67261295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_111208.known	chr6	+	1667	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	0	0	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTAAAGCTTTCACTTCA	5844	False	NA	32	True	AATATA	-20	NA	67243966	67261290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
transcript_111210.known	chr6	+	1336	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	0	0	0	0	multi-exon	FALSE	canonical	3	2743	junction_3	1435.93298973887	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5871	False	NA	19	True	NA	NA	NA	67243993	67261031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_111212.known	chr6	+	1166	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205091.3	1166	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	2347.58275797799	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5872	False	NA	19	True	NA	NA	NA	67243994	67261031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67244394_67248181_67248305_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_111215.known	chr6	+	1288	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205106.3	1288	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2366.15668801164	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5866	False	NA	38	True	NA	NA	NA	67243988	67261050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_111231.known	chr6	+	1928	5	FSM	ENSMUSG00000036371.7	ENSMUST00000203167.3	1928	5	0	0	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1481.85447581738	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAGTGAAACTCAT	5872	False	NA	NA	False	NA	NA	NA	67243994	67250994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847
transcript_111232.known	chr6	+	558	5	FSM	ENSMUSG00000036371.7	ENSMUST00000204034.2	558	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2693.56653667586	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGCAGTGATTTGGATCA	6118	False	NA	NA	False	AATACA	-21	NA	67244240	67249839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249217_67249802
transcript_111233.nic	chr6	+	884	5	ISM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	-48	11112	-21	80	5prime_fragment	FALSE	canonical	3	2743	junction_3	1618.92887042637	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTAAGTGGGTTTGTGTG	5823	False	NA	NA	False	NA	NA	NA	67243945	67249919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847
transcript_111235.known	chr6	+	2367	1	FSM	ENSMUSG00000036371.7	ENSMUST00000204944.2	2367	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAAGCAACTCT	5849	False	NA	NA	False	ATTAAA	-27	NA	67243971	67246338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_67244000_67246300
transcript_111236.known	chr6	-	1829	9	FSM	ENSMUSG00000053604.6	ENSMUST00000066134.6	1829	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGTCTTCTCTGCCGA	8005	False	NA	-5	True	AATAAA	-20	NA	70769216	70742703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_70743633_70747977_70748078_70750413_70750556_70751234_70751304_70752092_70752158_70754335_70754396_70760544_70760601_70762528_70762590_70768869
transcript_111239.known	chr6	+	4513	17	FSM	ENSMUSG00000031668.15	ENSMUST00000034093.15	4513	17	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	9.41408519188137	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTGACTCTTATTTTAGA	NA	False	NA	NA	False	AATAAA	-22	NA	70821498	70882229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_70822006_70835370_70835501_70853661_70853857_70855818_70855953_70858467_70858703_70859248_70859412_70860578_70860720_70861753_70861877_70862144_70862366_70864783_70864897_70866458_70866582_70867048_70867199_70869338_70870126_70873899_70874068_70877215_70877318_70878388_70878452_70881071
transcript_111243.known	chr6	+	927	3	FSM	ENSMUSG00000031668.15	ENSMUST00000162950.2	927	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTGTGTTTTTTCTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	70821536	70841809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_70822006_70835370_70835501_70841481
transcript_111244.known	chr6	+	1206	2	FSM	ENSMUSG00000055874.7	ENSMUST00000069634.6	1206	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCATAGACATCGCTCCTC	NA	False	NA	NA	False	NA	NA	NA	70933589	70938050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_70934185_70937439
transcript_111245.known	chr6	+	354	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2034	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	71101593	71101947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71101600_71101900
transcript_111246.known	chr6	-	1821	10	FSM	ENSMUSG00000054474.16	ENSMUST00000074241.9	1821	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.32591767713239	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGGTGTTTTGTTTTGTT	NA	False	NA	0	True	NA	NA	NA	71121331	71105381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_71105837_71106195_71106348_71108631_71108758_71108858_71109008_71111064_71111296_71115634_71115788_71116732_71116928_71118203_71118439_71118668_71118737_71121274
transcript_111247.known	chr6	-	2077	9	FSM	ENSMUSG00000054474.16	ENSMUST00000160918.8	2077	9	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_8	2.47171499166065	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACAGTTCTTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	71121423	71105149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_71105837_71106195_71106348_71108631_71108758_71108858_71109008_71111064_71111296_71115634_71115788_71116732_71116928_71118203_71118439_71121274
transcript_111248.known	chr6	+	1687	3	FSM	ENSMUSG00000053012.18	ENSMUST00000204436.3	1687	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	14.5	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTGTGTCAGTGCT	NA	False	NA	6	True	AATAAA	-18	NA	71248660	71262303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71248825_71259134_71259302_71260947
transcript_111251.known	chr6	+	2874	2	FSM	ENSMUSG00000073018.7	ENSMUST00000114185.4	2874	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTGTGATGTGATT	NA	False	NA	11	True	NA	NA	NA	71270748	71279864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71270843_71277084
transcript_111253.known	chr6	-	6165	9	FSM	ENSMUSG00000002222.15	ENSMUST00000002292.15	6165	9	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_4	25.5828922328966	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGATCCAGTTTGTGA	NA	False	NA	0	True	ATTAAA	-25	NA	71417621	71365617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110_71376278_71390233_71390335_71391768_71391904_71406001_71406145_71416981
transcript_111255.known	chr6	+	3264	4	FSM	ENSMUSG00000052656.13	ENSMUST00000064637.11	3264	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	2.16024689946929	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTGTAGGTTTCTGATC	NA	False	NA	5	True	AATAAA	-16	NA	71470877	71487865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71471873_71473814_71473955_71482717_71482834_71485852
transcript_111261.known	chr6	+	2654	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTATATTATGCCTTTG	NA	False	NA	23	True	NA	NA	NA	71520780	71558563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
transcript_111278.known	chr6	-	4816	27	FSM	ENSMUSG00000053470.14	ENSMUST00000065509.11	4816	27	0	0	0	0	multi-exon	TRUE	canonical	3	176	junction_18	110.285703472991	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGATAATCATTTCTTAGT	NA	False	NA	-4	True	AATAAA	-18	NA	71609889	71565955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
transcript_111281.known	chr6	-	4753	26	FSM	ENSMUSG00000053470.14	ENSMUST00000207023.2	4753	26	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_25	126.668929102602	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTGTTCTTTGTCCTTT	NA	False	NA	-17	True	ATTAAA	-19	NA	71609974	71566020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609821
transcript_111287.nic	chr6	-	3350	20	ISM	ENSMUSG00000053470.14	ENSMUST00000065509.11	4816	27	-75	6510	10	-873	5prime_fragment	FALSE	canonical	3	176	junction_11	97.6844090288364	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTATTAAAGACTTCTC	NA	False	NA	NA	False	NA	NA	NA	71609964	71572465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
transcript_111299.nic	chr6	-	3233	17	NIC	ENSMUSG00000053470.14	novel	4753	26	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_16	78.1394736592844	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTGTTCTTTGTCCTTT	NA	False	NA	-17	True	ATTAAA	-19	NA	71586170	71566020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
transcript_1113.known	chr1	+	1414	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTCAGCAAGCGGTAT	NA	False	NA	NA	False	AATGAA	-44	NA	37469250	37478205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_11130.known	chr10	+	3948	23	FSM	ENSMUSG00000035697.15	ENSMUST00000099501.10	3948	23	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	23.4611072568839	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGATCTTGTTCTTTTGC	NA	False	NA	16	True	AATAAA	-21	NA	79852486	79867306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79852753_79853613_79853939_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
transcript_11131.known	chr10	+	3867	23	FSM	ENSMUSG00000035697.15	ENSMUST00000105373.8	3867	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23.578776000589	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCGATCTTGTTCTTT	NA	False	NA	13	True	AATAAA	-18	NA	79852749	79867303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79852938_79853613_79853939_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
transcript_111315.known	chr6	-	1718	11	FSM	ENSMUSG00000053470.14	ENSMUST00000205470.2	1718	11	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_10	80.0652234119159	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACGACAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	71586123	71571592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
transcript_111318.nic	chr6	-	1674	10	ISM	ENSMUSG00000053470.14	ENSMUST00000205470.2	1718	11	36	873	36	-873	5prime_fragment	FALSE	canonical	3	172	junction_9	82.8613299434664	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTATTAAAGACTTCTC	NA	False	NA	NA	False	NA	NA	NA	71586087	71572465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
transcript_111321.known	chr6	+	3924	7	FSM	ENSMUSG00000052852.9	ENSMUST00000121469.2	3924	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	4.12310562561766	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTAATGTTGGGCTAAT	1275	False	NA	NA	False	AATAAA	-27	NA	71684544	71787694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71684986_71733347_71733421_71738348_71738426_71750171_71750293_71757705_71757820_71772130_71772309_71784774
transcript_111323.known	chr6	-	3721	4	FSM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	0	0	0	0	multi-exon	FALSE	canonical	3	1437	junction_1	9.53356643071673	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCTTTCTTCCCAT	NA	False	NA	NA	False	AGTAAA	-20	NA	71800794	71789980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800699
transcript_111332.known	chr6	+	2728	15	FSM	ENSMUSG00000052337.16	ENSMUST00000064062.13	2728	15	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_4	225.763692603481	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATGAAAACTGAGTACTC	NA	False	NA	-1	True	AATAAA	-6	NA	71808314	71852228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_111337.known	chr6	+	2299	15	FSM	ENSMUSG00000052337.16	ENSMUST00000101301.10	2299	15	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_4	278.631248156016	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTAGGAAGAGTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	71808396	71851914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_11135.known	chr10	+	3499	22	FSM	ENSMUSG00000035697.15	ENSMUST00000043311.7	3499	22	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_7	15.7468637773006	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCCCGATCTTGTTCTT	820	False	NA	12	True	AATAAA	-17	NA	79855486	79867302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79855633_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
transcript_111353.known	chr6	+	2413	13	FSM	ENSMUSG00000052337.16	ENSMUST00000166938.8	2413	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	399.840558500788	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808401	71852234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_111358.nic	chr6	+	1047	9	ISM	ENSMUSG00000052337.16	ENSMUST00000101301.10	2299	15	-82	12539	0	1288	5prime_fragment	FALSE	canonical	3	438	junction_4	352.517175999979	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATTGCTGGAGCCACC	NA	False	NA	19	True	AAGAAA	-2	NA	71808314	71839375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328
transcript_11136.nnic	chr10	+	3458	22	NNC	ENSMUSG00000035697.15	novel	3499	22	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_20	19.3664974760486	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCGATCTTGTTCTTT	799	False	NA	13	True	AATAAA	-18	NA	79855465	79867303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_79855633_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866185_79866211_79866565
transcript_111360.nic	chr6	+	1093	8	ISM	ENSMUSG00000052337.16	ENSMUST00000064062.13	2728	15	-63	14141	-63	0	5prime_fragment	FALSE	canonical	3	675	junction_4	303.790341236471	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAATTACTCATGGACT	NA	False	NA	NA	False	AAGAAA	-37	NA	71808251	71838087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986
transcript_111362.nic	chr6	+	1060	8	ISM	ENSMUSG00000052337.16	ENSMUST00000101301.10	2299	15	-145	13827	-63	0	5prime_fragment	TRUE	canonical	3	438	junction_4	376.688362508028	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAATTACTCATGGACT	NA	False	NA	NA	False	AAGAAA	-37	NA	71808251	71838087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986
transcript_111364.known	chr6	+	885	7	FSM	ENSMUSG00000052337.16	ENSMUST00000165331.8	885	7	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_5	560.308372436306	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAATTACTCATGGACT	NA	False	NA	NA	False	AAGAAA	-37	NA	71808363	71838087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71833895_71834033_71837986
transcript_111371.known	chr6	+	2934	5	FSM	ENSMUSG00000052337.16	ENSMUST00000167244.2	2934	5	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_4	485.149719158942	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATTAGCATCTTTG	NA	False	NA	NA	False	NA	NA	NA	71808362	71832170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746
transcript_111374.known	chr6	+	2469	13	FSM	ENSMUSG00000052337.16	ENSMUST00000166975.8	2469	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	527.655558948154	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808316	71852234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849879_71851300
transcript_111378.known	chr6	-	2581	24	FSM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	208.34992196086	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGTAAGCGTGTAC	3048	False	NA	-3	True	AATAAA	-26	NA	71885734	71857623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
transcript_111390.nnic	chr6	-	2562	23	NIC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	264.585833375751	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATTCTTTGTAAGCGTG	3013	False	NA	-6	True	AATAAA	-23	NA	71885769	71857626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
transcript_1114.nic	chr1	+	1130	6	NIC	ENSMUSG00000026111.16	novel	1179	6	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	188.928134485047	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469241	37478068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_111427.known	chr6	+	9216	34	FSM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_3	38.128991835157	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATCATCTGGATG	NA	False	NA	NA	False	NA	NA	NA	71886044	71959459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676_71931830_71938507_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681_71949809_71951084_71951196_71951727_71952004_71953002_71953204_71954317_71954436_71954927_71955093_71955398
transcript_111436.nic	chr6	+	4387	29	ISM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	-11	8283	-3	-8283	5prime_fragment	FALSE	canonical	3	275	junction_3	24.9690624900626	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAAGCAAGAAGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	71886033	71951176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676_71931830_71938507_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681_71949809_71951084
transcript_111439.nic	chr6	+	4225	28	ISM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	-22	9732	-14	-9732	5prime_fragment	FALSE	canonical	3	275	junction_3	25.0320507855328	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAGCCTTCAGAAATGT	NA	False	NA	NA	False	AAAAAG	-13	NA	71886022	71949727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676_71931830_71938507_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681
transcript_111448.nic	chr6	+	3950	26	ISM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	-8	15085	0	12240	5prime_fragment	FALSE	canonical	3	275	junction_3	25.4235796063418	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATTGAAGAAAGTGAAGAG	NA	False	NA	NA	False	AAGAAA	-1	NA	71886036	71944374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676_71931830_71938507_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295
transcript_111462.nic	chr6	+	3382	20	ISM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	-8	27265	0	60	5prime_fragment	FALSE	canonical	3	275	junction_3	22.8414989005135	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATGAAAAGACAAGATAGAT	NA	False	NA	NA	False	NA	NA	NA	71886036	71932194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676
transcript_111473.known	chr6	+	2258	7	FSM	ENSMUSG00000056091.13	ENSMUST00000069994.11	2258	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	8.15304987242334	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTGTTTGTTCCTTC	NA	False	NA	20	True	NA	NA	NA	72074575	72131555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72074767_72105247_72105372_72109035_72109148_72119123_72119468_72124052_72124240_72126002_72126162_72130414
transcript_111475.known	chr6	+	2439	7	FSM	ENSMUSG00000056091.13	ENSMUST00000114112.4	2439	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.3585908702499	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTGTTTGTTCCTTC	NA	False	NA	20	True	NA	NA	NA	72074606	72131555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72074979_72105247_72105372_72109035_72109148_72119123_72119468_72124052_72124240_72126002_72126162_72130414
transcript_111480.known	chr6	-	2244	13	FSM	ENSMUSG00000056305.5	ENSMUST00000070345.5	2244	13	0	0	0	0	multi-exon	FALSE	canonical	3	571	junction_6	46.7748745470139	1073	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTGTGGGTGGGCACT	NA	False	NA	67	True	NA	NA	NA	72322167	72295660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72296223_72296722_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242_72313469_72314684_72314838_72315375_72315513_72316949_72317045_72319881_72319952_72321867
transcript_111492.known	chr6	+	4605	4	FSM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	6.54896090146283	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTGCCAAAAGTTGTG	8326	False	NA	15	True	AATAAA	-15	NA	72324316	72330131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72324499_72324575_72324695_72325511_72325664_72325979
transcript_111494.nic	chr6	+	1779	3	ISM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	-27	3169	-10	-638	intron_retention	FALSE	canonical	3	33	junction_1	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAGAAGATGA	8299	False	NA	NA	False	NA	NA	NA	72324289	72326962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_72324499_72324575_72324695_72325511
transcript_111495.known	chr6	+	2118	3	FSM	ENSMUSG00000058706.6	ENSMUST00000204152.2	2118	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGGGCTTTGTCTTCTA	8359	False	NA	NA	False	CATAAA	-43	NA	72324349	72327600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72324695_72325511_72325664_72325979
transcript_111497.known	chr6	+	1033	2	FSM	ENSMUSG00000058706.6	ENSMUST00000205472.2	1033	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTTTGGGGGGTGTCAGG	8318	False	NA	NA	False	NA	NA	NA	72324308	72326158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72324695_72325511
transcript_111498.known	chr6	+	1546	8	FSM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	17.1583263538524	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGTTCTGGAGAAT	NA	False	NA	10	True	ATTAAA	-21	NA	72332429	72336745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
transcript_1115.known	chr1	+	1179	6	FSM	ENSMUSG00000026111.16	ENSMUST00000118059.3	1179	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	196.480635178126	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469282	37478068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37469509_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_111500.known	chr6	-	1100	5	FSM	ENSMUSG00000055850.13	ENSMUST00000125554.8	1100	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	461.587681269767	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTCTTAGTTTCTGGC	8480	False	NA	NA	False	NA	NA	NA	72339343	72336854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338294_72338354_72339258
transcript_111502.known	chr6	-	1434	5	FSM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_2	66.4266512779321	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8408	False	NA	NA	False	TATAAA	-15	NA	72339415	72336696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
transcript_111503.known	chr6	-	789	5	FSM	ENSMUSG00000055850.13	ENSMUST00000129233.8	789	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	481.225194165892	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAACTGATAAATTAAC	8450	False	NA	-38	True	NA	NA	NA	72339373	72337259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72337626_72337857_72337933_72338104_72338210_72338394_72338523_72339258
transcript_111505.known	chr6	-	869	5	FSM	ENSMUSG00000055850.13	ENSMUST00000114095.2	869	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	424.836071326341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGCTGTTTAAAACT	8458	False	NA	-49	True	NA	NA	NA	72339365	72337270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72337626_72337857_72337997_72338104_72338210_72338394_72338523_72339223
transcript_111506.known	chr6	-	617	4	FSM	ENSMUSG00000055850.13	ENSMUST00000151063.2	617	4	0	0	0	0	multi-exon	FALSE	canonical	2	47	junction_3	415.627236836086	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTCTGAGTGTTCTTTT	8475	False	NA	-97	True	NA	NA	NA	72339348	72337318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72339223
transcript_111513.known	chr6	-	623	3	FSM	ENSMUSG00000073002.10	ENSMUST00000101285.10	623	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCTCTCTCTCTCTCT	9583	False	NA	NA	False	AGTAAA	-21	NA	72357405	72346010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72346454_72347176_72347315_72357363
transcript_111514.known	chr6	-	2619	2	FSM	ENSMUSG00000073002.10	ENSMUST00000206154.2	2619	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	72349118	72345776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72346454_72347176
transcript_111515.known	chr6	-	820	3	FSM	ENSMUSG00000050732.10	ENSMUST00000059983.10	820	3	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0.5	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGCGCTTTACTCCTGTG	8093	False	NA	-18	True	AATAAA	-25	NA	72367686	72362205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72362637_72365244_72365404_72367456
transcript_11152.known	chr10	-	1148	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	153.800375667797	1060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5515	False	NA	-19	True	ATTAAA	-19	NA	79875629	79871782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
transcript_111520.known	chr6	+	2929	15	FSM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_7	7.03816128585544	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCTGGCTTATTAATAG	1281	False	NA	12	True	NA	NA	NA	72391290	72407695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
transcript_111524.known	chr6	-	1400	9	FSM	ENSMUSG00000053907.11	ENSMUST00000206692.2	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	259.956697115116	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATACTTTCGCCATGA	NA	False	NA	NA	False	AATAAA	-25	NA	72416539	72411527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72411723_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
transcript_111529.known	chr6	-	2804	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416541	72409781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
transcript_111538.known	chr6	-	3387	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416539	72409781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
transcript_11154.known	chr10	-	900	6	FSM	ENSMUSG00000004667.19	ENSMUST00000152843.2	900	6	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	164.012926319848	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCCACTGCTCTGCACA	5609	False	NA	NA	False	AATGAA	-37	NA	79875535	79872008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79872808_79873021_79873219_79874272_79874448_79875416
transcript_111553.known	chr6	+	1560	1	FSM	ENSMUSG00000108591.2	ENSMUST00000205370.2	1560	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTGGAGTCTGGAGCT	1663	False	NA	NA	False	AATAAA	-14	NA	72416033	72417593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72416000_72417600
transcript_111555.known	chr6	+	1247	10	FSM	ENSMUSG00000056737.15	ENSMUST00000071044.13	1247	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	22.7389913671443	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72521373	72539966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72521450_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
transcript_111556.known	chr6	+	1400	10	FSM	ENSMUSG00000056737.15	ENSMUST00000114071.8	1400	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	14.6439217576592	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72526255	72539966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72526485_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
transcript_111563.known	chr6	-	2164	13	FSM	ENSMUSG00000056698.12	ENSMUST00000114069.8	2164	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	16.532795690183	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTCCAAGATGAAGTT	NA	False	NA	1	True	AATAAA	-23	NA	72575325	72542904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72573418_72573450_72575304
transcript_111564.known	chr6	-	2122	12	FSM	ENSMUSG00000056698.12	ENSMUST00000070990.8	2122	12	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	7.42677755109095	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTCTGGTATTTTCTTC	NA	False	NA	-11	True	AATAAA	-11	NA	72575326	72542916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
transcript_111565.known	chr6	-	2509	11	FSM	ENSMUSG00000056698.12	ENSMUST00000141833.8	2509	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	7.7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATAAATAAAAATAG	NA	False	NA	NA	False	NA	NA	NA	72575378	72544532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
transcript_111570.known	chr6	+	3027	11	FSM	ENSMUSG00000056666.14	ENSMUST00000070597.13	3027	11	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	54.9894535342915	2928	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTGATATCTGAAATTT	NA	False	NA	NA	False	AATATA	-25	NA	72575457	72585408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
transcript_1116.nic	chr1	+	2324	5	ISM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	-24	-3	-24	0	intron_retention	FALSE	canonical	3	315	junction_1	77.3413699128739	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469195	37478068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457
transcript_11160.known	chr10	-	1238	5	FSM	ENSMUSG00000004667.19	ENSMUST00000131743.8	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	2815	junction_1	73.6562964043129	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGGTGCAATCCTAGA	5660	False	NA	-21	True	ATTAAA	-17	NA	79875484	79871784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79872136_79872360_79872808_79873021_79873219_79874272_79874448_79875416
transcript_111600.known	chr6	-	5013	4	FSM	ENSMUSG00000056429.5	ENSMUST00000070524.5	5013	4	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	25.9786236911983	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCATTGAAACATTACAT	4419	False	NA	-37	True	AATAAA	-12	NA	72593983	72585414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72589094_72591054_72591139_72592506_72593433_72593659
transcript_111608.known	chr6	-	1888	13	FSM	ENSMUSG00000055799.14	ENSMUST00000114053.9	1888	13	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	90.8812946772999	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTCAATATTTGACCACT	5125	False	NA	NA	False	NA	NA	NA	72765935	72604254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72625783_72625826_72626102_72626187_72765193_72765322_72765544_72765609_72765692
transcript_111611.known	chr6	-	3042	12	FSM	ENSMUSG00000055799.14	ENSMUST00000069536.12	3042	12	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_8	63.9987086646582	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTCTCTGGATGTTTCT	4823	False	NA	-8	True	AATAAA	-14	NA	72766237	72603360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72626102_72626187_72765193_72765322_72765544_72765609_72765692
transcript_111619.known	chr6	-	1743	7	FSM	ENSMUSG00000055239.11	ENSMUST00000204598.3	1743	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	409.390196918946	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTGTGTGTATTTAT	9152	False	NA	-84	True	NA	NA	NA	72876275	72819551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72820114_72825207_72825491_72826426_72826602_72827365_72827468_72835756_72835897_72838740_72838909_72875962
transcript_11162.known	chr10	-	2403	4	FSM	ENSMUSG00000004667.19	ENSMUST00000143438.8	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	187.276978474843	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5600	False	NA	-19	True	ATTAAA	-19	NA	79875544	79871782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79874448_79875416
transcript_111620.known	chr6	-	3251	7	FSM	ENSMUSG00000055239.11	ENSMUST00000068697.11	3251	7	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_2	56.146880788003	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCACTCGAATTTCTTTGG	8465	False	NA	-9	True	AATAAA	-18	NA	72876962	72818096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72820114_72825207_72825491_72826426_72826602_72827365_72827468_72835756_72835897_72838740_72838909_72876596
transcript_111627.known	chr6	-	570	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	4300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGTCTGAATTTTTTA	NA	False	NA	-11	True	AATAAA	-20	NA	72935471	72934329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72934636_72934895_72935008_72935319
transcript_111628.known	chr6	-	433	2	FSM	ENSMUSG00000079523.9	ENSMUST00000144337.2	433	2	0	0	0	0	multi-exon	FALSE	canonical	3	27215	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCATTGAACAGGAAAAGA	NA	False	NA	NA	False	GGGGCT	-37	NA	72935382	72934637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72935008_72935319
transcript_111629.known	chr6	-	690	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935285	72934335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_72934636_72934895
transcript_111631.known	chr6	+	1519	9	FSM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	134.074081667562	973	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGAAGACTTTTTATTG	2315	False	NA	19	True	AATAAA	-23	NA	73225364	73253894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_73225737_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
transcript_111637.known	chr6	-	2353	1	FSM	ENSMUSG00000072476.7	ENSMUST00000097218.7	2353	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTCACGAGGAAGTGGAAA	NA	False	NA	NA	False	NA	NA	NA	76474767	76472414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_76472400_76474800
transcript_111639.known	chr6	+	3519	18	FSM	ENSMUSG00000035125.11	ENSMUST00000152996.8	3519	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	18.7212293684401	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTACTGCCCTTTTAGA	NA	False	NA	NA	False	TTTAAA	-16	NA	81900653	81936237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_81900920_81902746_81902876_81907648_81907874_81909794_81909893_81910708_81910785_81912886_81913003_81916360_81916548_81918298_81918423_81919909_81919992_81920409_81920523_81921387_81921502_81923443_81923595_81925243_81925363_81926889_81926967_81928700_81928768_81930254_81930402_81933811_81933937_81934934
transcript_111641.known	chr6	+	4192	17	FSM	ENSMUSG00000035125.11	ENSMUST00000043195.11	4192	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_9	9.77161066559654	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGGTTCCAGGAAGACAG	NA	False	NA	NA	False	NA	NA	NA	81900649	81936896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_81900920_81902746_81902876_81907648_81907874_81909794_81909893_81912886_81913003_81916360_81916548_81918298_81918423_81919909_81919992_81920409_81920523_81921301_81921502_81923443_81923595_81925243_81925363_81926889_81926967_81928700_81928768_81930254_81930402_81933811_81933937_81934934
transcript_111658.nnic	chr6	-	1230	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	-8	526	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	269.009293519759	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCATGTCAGTTTATTG	NA	False	NA	NA	False	ATTAAA	-35	NA	81942947	81938428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_81938566_81938746_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
transcript_111662.known	chr6	-	5000	5	FSM	ENSMUSG00000030045.11	ENSMUST00000032124.9	5000	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_3	40.9839907768875	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81942939	81934831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
transcript_111676.known	chr6	+	1773	3	FSM	ENSMUSG00000035104.15	ENSMUST00000042974.15	1773	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	1.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCTTCGTGTCTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	82018603	82070080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_82018883_82048035_82048224_82068774
transcript_111682.nic	chr6	-	744	4	NIC	ENSMUSG00000030042.16	novel	457	4	NA	NA	-24	199	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	385.203842140755	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTCATTGTTATGTCTC	NA	False	NA	75	True	NA	NA	NA	82629875	82595773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_82596120_82628417_82628460_82629063_82629149_82629604
transcript_111684.nic	chr6	-	714	4	NIC	ENSMUSG00000030042.16	novel	457	4	NA	NA	-25	109	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	385.203842140755	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGTTTTTCTTTTTC	NA	False	NA	-15	True	NA	NA	NA	82629935	82595863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_82596120_82628417_82628460_82629063_82629149_82629604
transcript_111686.known	chr6	-	890	4	FSM	ENSMUSG00000030042.16	ENSMUST00000141138.8	890	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	458.476462500167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	NA	False	NA	-36	True	NA	NA	NA	82629501	82624296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629459
transcript_111687.known	chr6	-	1769	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTCTTGAAGTGTCTTA	NA	False	NA	1	True	ATTAAA	-27	NA	82629910	82623681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
transcript_111688.nnic	chr6	-	914	4	NNC	ENSMUSG00000030042.16	novel	890	4	NA	NA	16600	0	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_3	429.604727886254	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	NA	False	NA	-36	True	NA	NA	NA	82665746	82624296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82665680
transcript_111694.known	chr6	-	648	4	FSM	ENSMUSG00000030042.16	ENSMUST00000160281.8	648	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	443.647257276419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACATGTGTGGTATGTGCT	NA	False	NA	NA	False	AATAAA	-33	NA	82629851	82598832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_82599107_82628417_82628460_82629063_82629149_82629604
transcript_111696.known	chr6	-	5513	18	FSM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_14	56.0328005768445	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGTGTGTGATTGGAT	9398	False	NA	-1	True	AATAAA	-23	NA	82751435	82702005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
transcript_1117.nic	chr1	+	2495	5	ISM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	-15	137	-15	0	intron_retention	FALSE	canonical	3	180	junction_1	134.998148135447	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469235	37478068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457
transcript_111702.known	chr6	-	1833	4	FSM	ENSMUSG00000100291.7	ENSMUST00000186147.7	1833	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4142135623731	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGGTTATATCTTATT	NA	False	NA	NA	False	AATAAA	-22	NA	82858834	82854844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_82856458_82857375_82857438_82858217_82858291_82858749
transcript_111703.known	chr6	-	4086	14	FSM	ENSMUSG00000000627.16	ENSMUST00000000641.15	4086	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	5.49986551745215	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCGGGCGTGGTTATTGT	NA	False	NA	-5	True	NA	NA	NA	82916750	82888865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_82891086_82891347_82891407_82894302_82894464_82894569_82894680_82894803_82895027_82895164_82895313_82895512_82895692_82896297_82896450_82896543_82896664_82907878_82907973_82912567_82912667_82912875_82912936_82914041_82914194_82916441
transcript_111706.known	chr6	+	1945	10	FSM	ENSMUSG00000030041.10	ENSMUST00000113980.4	1945	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	176.542723818721	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTTCAGAGCATTCC	NA	False	NA	12	True	ATTAAA	-17	NA	82923882	83007164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
transcript_111712.known	chr6	-	1807	5	FSM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	5.31507290636732	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83010452	83007914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83009042_83009211_83009397_83009515_83009610_83009747_83010048_83010351
transcript_111713.nic	chr6	-	1756	5	NIC	ENSMUSG00000068335.7	novel	1807	5	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	11.7686022959398	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83010475	83007914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_83009042_83009285_83009397_83009515_83009610_83009747_83010048_83010351
transcript_111714.nic	chr6	-	1994	4	NIC	ENSMUSG00000068335.7	novel	1966	4	NA	NA	-23	0	intron_retention	FALSE	canonical	3	31	junction_1	4.92160768674447	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGGCCTCTGCGTATG	NA	False	NA	-10	True	ATTAAA	-13	NA	83010475	83007920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_83009397_83009515_83009610_83009747_83010048_83010351
transcript_111716.known	chr6	-	1966	4	FSM	ENSMUSG00000068335.7	ENSMUST00000149918.2	1966	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	15.121728296285	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGGCCTCTGCGTATG	NA	False	NA	-10	True	ATTAAA	-13	NA	83010449	83007920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83009397_83009515_83009610_83009747_83010046_83010351
transcript_111720.known	chr6	+	4098	14	FSM	ENSMUSG00000000693.11	ENSMUST00000000707.9	4098	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.5903781908435	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCGCCCCCCAGCTACA	2229	False	NA	NA	False	AATAAA	-11	NA	83011153	83029543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83011271_83012435_83012779_83014409_83014574_83015375_83015591_83024968_83025189_83025558_83025740_83025849_83026005_83026164_83026333_83026464_83026628_83026754_83026999_83027096_83027213_83027288_83027426_83027538_83027651_83027780
transcript_111724.nnic	chr6	+	1443	12	NNC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	317.12207936872	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5344	False	NA	9	True	ATTAAA	-19	NA	83031632	83034663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_83031814_83031891_83032030_83032109_83032192_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
transcript_111726.known	chr6	+	1491	12	FSM	ENSMUSG00000068328.11	ENSMUST00000203915.4	1491	12	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	313.3608012109	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTCTGTTGCCTCT	5423	False	NA	5	True	ATTAAA	-15	NA	83031711	83034659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034194_83034376_83034478
transcript_111727.known	chr6	+	1769	12	FSM	ENSMUSG00000068328.11	ENSMUST00000092618.10	1769	12	0	0	0	0	multi-exon	TRUE	canonical	3	960	junction_10	78.8006166859286	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTGGATCCCAGCTCAAT	5213	False	NA	NA	False	ACTAAA	-13	NA	83031501	83034789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
transcript_111739.known	chr6	+	1265	11	FSM	ENSMUSG00000068328.11	ENSMUST00000204343.4	1265	11	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	333.699805214207	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5440	False	NA	9	True	ATTAAA	-19	NA	83031728	83034663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83031814_83031891_83032030_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
transcript_111759.known	chr6	-	1725	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	1897	False	NA	2	True	AATAAA	-31	NA	83031552	83028246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
transcript_111780.known	chr6	-	1605	7	FSM	ENSMUSG00000068329.13	ENSMUST00000122955.8	1605	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	204.724543933767	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACAGTCAAAAGTGGGG	1897	False	NA	-12	True	AATAAA	-17	NA	83031552	83028260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83030018_83030052_83030309_83030505_83030593_83030799_83030901
transcript_1118.known	chr1	+	808	5	FSM	ENSMUSG00000026111.16	ENSMUST00000144617.8	808	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	199.60774033088	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTTTTGGTGGTTTGAG	NA	False	NA	NA	False	NA	NA	NA	37469257	37476559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457
transcript_11180.known	chr10	+	959	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	2169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	655	False	NA	4	True	AATAAA	-14	NA	79889321	79892273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
transcript_11181.known	chr10	+	995	7	FSM	ENSMUSG00000075706.12	ENSMUST00000097227.11	995	7	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_1	2928.20988641335	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	1204	False	NA	4	True	AATAAA	-14	NA	79889870	79892273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79890135_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
transcript_111813.nnic	chr6	+	2887	12	NNC	ENSMUSG00000009145.7	novel	3257	12	NA	NA	-45	-102	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_11	2.71207888912296	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTCTATGATGCCAA	812	False	NA	NA	False	AATAAA	-17	NA	83035032	83044197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_83035121_83035470_83035717_83035897_83036092_83036419_83036808_83037148_83037383_83037471_83037572_83037677_83037837_83037916_83038109_83041504_83041625_83041774_83041966_83043070_83043262_83043413
transcript_111816.nnic	chr6	-	2318	3	NNC	ENSMUSG00000068327.6	novel	1236	3	NA	NA	-920	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	44.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTCAGTCTCCAGTTGT	6256	False	NA	-7	True	AAAACA	-19	NA	83048194	83045305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_83045956_83046034_83046169_83046660
transcript_111817.known	chr6	-	1236	3	FSM	ENSMUSG00000068327.6	ENSMUST00000089641.6	1236	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	3	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAACCCCGCTGA	7176	False	NA	NA	False	NA	NA	NA	83047274	83045571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83045956_83046034_83046273_83046660
transcript_111818.known	chr6	-	1514	2	FSM	ENSMUSG00000068327.6	ENSMUST00000174674.3	1514	2	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCAGTCTCCAGTTGTC	7244	False	NA	-6	True	AAAACA	-20	NA	83047206	83045304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83046273_83046660
transcript_111819.nnic	chr6	+	1718	11	NNC	ENSMUSG00000069678.11	novel	918	9	NA	NA	-5515	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	71.2011938102164	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCATCTTCCTTCTTA	809	False	NA	23	True	AATAAA	-15	NA	83049334	83057835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_83049526_83054554_83055220_83055381_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
transcript_111822.known	chr6	+	866	9	FSM	ENSMUSG00000069678.11	ENSMUST00000092614.9	866	9	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	14.5408906192159	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	150	False	NA	16	True	AATAAA	-8	NA	83055370	83057828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
transcript_111827.known	chr6	+	854	9	FSM	ENSMUSG00000069678.11	ENSMUST00000177177.8	854	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	65.3345955447801	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCATCTTCCTTCTTA	101	False	NA	23	True	AATAAA	-15	NA	83055610	83057835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83055681_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
transcript_111828.known	chr6	+	817	2	FSM	ENSMUSG00000034968.4	ENSMUST00000041265.4	817	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCTCAATTCGGAAAGC	5261	False	NA	NA	False	AATAAA	-22	NA	83063347	83065224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83063604_83064663
transcript_111829.known	chr6	+	3628	12	FSM	ENSMUSG00000079511.9	ENSMUST00000101253.6	3628	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	292.410783172753	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	233	False	NA	NA	False	ATTAAA	-19	NA	83078597	83086920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83078721_83078733_83079620_83079938_83080026_83080100_83080251_83080382_83080514_83080592_83080707_83084033_83084149_83084435_83084614_83084735_83084936_83085071_83086185_83086294_83086408_83086502
transcript_111836.known	chr6	+	2317	9	FSM	ENSMUSG00000107499.2	ENSMUST00000101254.9	2317	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	3.53553390593274	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCAGATCATGCCCCAGA	217	False	NA	NA	False	NA	NA	NA	83078581	83085375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83079620_83079938_83080026_83080100_83080251_83080382_83080514_83080592_83080707_83084033_83084149_83084435_83084614_83084735_83084936_83085071
transcript_111842.known	chr6	+	695	3	FSM	ENSMUSG00000030037.10	ENSMUST00000113938.5	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	747	junction_2	17.5	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7383	False	NA	NA	False	ATTAAA	-19	NA	83086020	83086920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83086185_83086294_83086408_83086502
transcript_111844.known	chr6	+	2780	4	FSM	ENSMUSG00000030036.9	ENSMUST00000032114.8	2780	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	15.1070255914995	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCCTTGCTTTAGACA	5173	False	NA	28	True	AATAAA	-17	NA	83092476	83095879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83092908_83092999_83093230_83093608_83093806_83093957
transcript_111846.nnic	chr6	+	2550	3	NIC	ENSMUSG00000030036.9	novel	2780	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_1	153	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCCTTGCTTTAGACA	5173	False	NA	28	True	AATAAA	-17	NA	83092476	83095879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_83092908_83093608_83093806_83093957
transcript_111848.known	chr6	-	981	5	FSM	ENSMUSG00000030035.15	ENSMUST00000146328.4	981	5	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_4	48.7769156466458	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCCTCCCATGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	83098368	83096287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83097752_83097855_83098183
transcript_111849.known	chr6	-	1314	4	FSM	ENSMUSG00000030035.15	ENSMUST00000113936.10	1314	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	56.6627449623354	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTGGGTAGAG	NA	False	NA	-7	True	ATTAAA	-17	NA	83098540	83096024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183
transcript_11185.known	chr10	+	735	6	FSM	ENSMUSG00000075706.12	ENSMUST00000183037.3	735	6	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_4	813.086120899871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTCACCCTGGCTGCCT	1632	False	NA	-41	True	NA	NA	NA	79890298	79892228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
transcript_111850.known	chr6	-	1902	4	FSM	ENSMUSG00000030035.15	ENSMUST00000131939.6	1902	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	19.1369334592098	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	-8	True	ATTAAA	-16	NA	83098540	83096025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097858_83098183
transcript_111854.known	chr6	-	1038	5	FSM	ENSMUSG00000030034.13	ENSMUST00000032109.5	1038	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_3	6.41774882649672	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTCTCCCACGCCACATT	NA	False	NA	-73	True	NA	NA	NA	83102010	83098808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83099346_83100974_83101145_83101287_83101407_83101565_83101759_83101991
transcript_111857.nic	chr6	-	658	2	ISM	ENSMUSG00000030034.13	ENSMUST00000113935.9	1503	5	-146	2922	-146	-274	5prime_fragment	FALSE	canonical	3	117	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCATCAGGAAGAGGAGG	NA	False	NA	NA	False	CATAAA	-18	NA	83102558	83101667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_83101759_83101991
transcript_111858.known	chr6	+	2597	13	FSM	ENSMUSG00000034930.17	ENSMUST00000121093.8	2597	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.6061814037432	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	4806	False	NA	18	True	ATTAAA	-18	NA	83114069	83129560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83114438_83114941_83115228_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_111859.known	chr6	+	2191	12	FSM	ENSMUSG00000034930.17	ENSMUST00000065512.11	2191	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	17.934223251548	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	3529	False	NA	18	True	ATTAAA	-18	NA	83112792	83129560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83113041_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_111860.known	chr6	+	3080	12	FSM	ENSMUSG00000034930.17	ENSMUST00000087938.11	3080	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.3022328399382	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	4827	False	NA	18	True	ATTAAA	-18	NA	83114090	83129560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83115228_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_111862.nic	chr6	+	2446	12	NIC	ENSMUSG00000034930.17	novel	653	6	NA	NA	-333	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	15.2196045821291	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	1317	False	NA	18	True	ATTAAA	-18	NA	83119039	83129560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_83119543_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_111871.known	chr6	-	1216	11	FSM	ENSMUSG00000030032.15	ENSMUST00000125894.9	1216	11	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_10	9.65453261426984	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9882	False	NA	0	True	TATAAA	-18	NA	83133379	83129690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
transcript_111875.known	chr6	+	4163	32	FSM	ENSMUSG00000031865.17	ENSMUST00000113913.8	4163	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	181.512101745655	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTCTGTGTGGCTCTG	524	False	NA	NA	False	ATTAAA	-16	NA	83142932	83177099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83142977_83159505_83159752_83160040_83160120_83160280_83160316_83160917_83160939_83163409_83163428_83164745_83164767_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174300_83174316_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
transcript_11188.known	chr10	-	3903	32	FSM	ENSMUSG00000035673.11	ENSMUST00000218630.2	3903	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_31	33.3366769048019	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCGCCCACCCACTCCAC	NA	False	NA	NA	False	NA	NA	NA	79937021	79893604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79936905
transcript_111881.known	chr6	+	4118	28	FSM	ENSMUSG00000031865.17	ENSMUST00000077407.12	4118	28	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_1	39.6793042772762	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGTGGCTCT	493	False	NA	NA	False	ATTAAA	-15	NA	83142901	83177098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83142977_83159505_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
transcript_111885.nic	chr6	+	4175	28	NIC	ENSMUSG00000031865.17	novel	4163	32	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	89.8211910680514	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTCTGTGTGGCTCTG	511	False	NA	NA	False	ATTAAA	-16	NA	83142919	83177099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_83143051_83159505_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
transcript_11189.known	chr10	-	4227	32	FSM	ENSMUSG00000035673.11	ENSMUST00000042771.8	4227	32	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_31	40.678557708356	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTACTTCAGCCTCTGG	NA	False	NA	NA	False	NA	NA	NA	79938532	79893249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894567_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938450
transcript_111909.nic	chr6	+	1194	9	ISM	ENSMUSG00000031865.17	ENSMUST00000077407.12	4118	28	-16	9627	-16	882	5prime_fragment	FALSE	canonical	3	372	junction_1	33.488570811547	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGAGCTGGAGGTCGTGC	477	False	NA	NA	False	AAGAAA	-3	NA	83142885	83167471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_83142977_83159505_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402
transcript_111915.known	chr6	+	5123	25	FSM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	237.48204610501	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCCATGTCTAATAACTGA	6757	False	NA	24	True	AATAAA	-25	NA	83214356	83281926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83214745_83217591_83217722_83237416_83237578_83238392_83238546_83239454_83239551_83240497_83240554_83241244_83241403_83242654_83242743_83244387_83244543_83245175_83245365_83247904_83248080_83249026_83249161_83250031_83250304_83254494_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_111921.nnic	chr6	+	2042	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-57	281	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_11	174.270144698779	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5669	False	NA	12	True	AATAAA	-22	NA	83254317	83280739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83276591_83276676_83277452_83277521_83280307
transcript_111924.nnic	chr6	+	3064	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-57	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	141.117169598726	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACGCCATGTCTAATAACT	5669	False	NA	22	True	AATAAA	-23	NA	83254317	83281924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307_83281566_83281644
transcript_111930.nnic	chr6	+	2015	12	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-57	281	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	141.343845443047	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5669	False	NA	12	True	AATAAA	-22	NA	83254317	83280739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_83254554_83256945_83257147_83262747_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_111934.nic	chr6	+	1958	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	39961	1187	-57	281	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5669	False	NA	12	True	AATAAA	-22	NA	83254317	83280739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_111935.nic	chr6	+	2362	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	39961	783	-57	685	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGCTCTGAGTGGATT	5669	False	NA	8	True	NA	NA	NA	83254317	83281143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_111936.nic	chr6	+	3145	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	39961	0	-57	0	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCCATGTCTAATAACTGA	5669	False	NA	24	True	AATAAA	-25	NA	83254317	83281926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_11194.nic	chr10	-	4432	29	NIC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_28	32.0305179732182	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGCCTACAGGTCAG	5639	False	NA	4	True	AATATA	-21	NA	79911289	79892825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79911061
transcript_111959.nic	chr6	+	1844	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-57	281	combination_of_known_junctions	FALSE	canonical	3	81	junction_2	130.075362770972	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5669	False	NA	12	True	AATAAA	-22	NA	83254317	83280739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_11198.nic	chr10	-	2422	18	ISM	ENSMUSG00000035673.11	ENSMUST00000219260.2	4850	33	1645	5424	-27	0	internal_fragment	FALSE	canonical	3	133	junction_10	12.4322384803871	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGGGTCTCCATTCCTC	NA	False	NA	0	True	AATAAA	-21	NA	79938559	79898249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
transcript_111982.known	chr6	-	2085	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	0	0	0	0	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	1809	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTGTCTCAGTCAGAC	NA	False	NA	2	True	AATAAA	-35	NA	83294588	83282672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
transcript_1120.known	chr1	+	818	4	FSM	ENSMUSG00000026111.16	ENSMUST00000193979.6	818	4	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	217.192694781999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTTTATCCAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	37469266	37476351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37469575_37470377_37470658_37471631_37471753_37476242
transcript_11200.known	chr10	-	2156	15	FSM	ENSMUSG00000035673.11	ENSMUST00000217876.2	2156	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_14	37.9085903785645	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGGGTCTCCATTCCTC	5655	False	NA	0	True	AATAAA	-21	NA	79911273	79898249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79911061
transcript_112007.known	chr6	+	4412	6	FSM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	40.3554209493595	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTTATTATCTACGTC	NA	False	NA	98	True	ATTAAA	-21	NA	83302997	83320758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157
transcript_112012.known	chr6	+	2312	4	FSM	ENSMUSG00000045160.15	ENSMUST00000136501.2	2312	4	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_1	124.478467571259	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGACTTCCATTCATGAC	349	False	NA	NA	False	AATATA	-32	NA	83326427	83337118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83326537_83328247_83328372_83330023_83330113_83335128
transcript_112014.known	chr6	+	315	3	FSM	ENSMUSG00000045160.15	ENSMUST00000127769.2	315	3	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_1	121.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACGGTCAGCATCTGAG	423	False	NA	NA	False	NA	NA	NA	83326501	83330179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83326537_83328247_83328372_83330023
transcript_112015.nic	chr6	-	2493	4	ISM	ENSMUSG00000034832.16	ENSMUST00000186548.7	5944	12	-225	35407	-225	1042	5prime_fragment	FALSE	canonical	1	2	junction_3	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCCCCACCCCTGCTG	9112	False	NA	NA	False	AAGAAA	-3	NA	83433599	83380430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_83381807_83418198_83418256_83431731_83432463_83433270
transcript_112016.known	chr6	-	2523	4	FSM	ENSMUSG00000034832.16	ENSMUST00000056191.2	2523	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	83418660	83375420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83375600_83379648_83381807_83418198_83418256_83418531
transcript_112021.known	chr6	-	1107	7	FSM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_5	13.5369863706809	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
transcript_112022.known	chr6	-	828	7	FSM	ENSMUSG00000014554.14	ENSMUST00000138941.3	828	7	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_3	102.417446430446	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGGTGTGTGCTGTCT	NA	False	NA	-39	True	NA	NA	NA	83483803	83457290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83457419_83458328_83458445_83458759_83458821_83463965_83464114_83467402_83467591_83473667_83473781_83483729
transcript_112023.nic	chr6	-	966	6	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	77.3356321497406	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483923	83457198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83483729
transcript_112026.known	chr6	-	1007	6	FSM	ENSMUSG00000014554.14	ENSMUST00000113888.3	1007	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	78.3019795407498	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83457419_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
transcript_112031.nic	chr6	-	988	3	ISM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	3	9736	3	255	5prime_fragment	FALSE	canonical	3	197	junction_1	15	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAACATTTCCTTATAAA	NA	False	NA	NA	False	NA	NA	NA	83483948	83466934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_83467591_83473667_83473781_83483729
transcript_112032.known	chr6	-	561	2	FSM	ENSMUSG00000014554.14	ENSMUST00000147060.2	561	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAACTCATTGTCAACCAG	NA	False	NA	NA	False	NA	NA	NA	83483889	83467189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83467591_83483729
transcript_112035.known	chr6	-	2152	10	FSM	ENSMUSG00000006906.11	ENSMUST00000206592.2	2152	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	11.8582158839607	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATGTAAATTATAAAA	NA	False	NA	NA	False	NA	NA	NA	83549399	83520743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83548754
transcript_112036.known	chr6	-	2364	10	FSM	ENSMUSG00000006906.11	ENSMUST00000068054.9	2364	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	7.14920352984241	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTCCAGAGTGATT	NA	False	NA	-17	True	AATAAA	-13	NA	83549711	83520205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83549392
transcript_112039.known	chr6	+	1242	3	FSM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTGTCCCTGTTCT	NA	False	NA	21	True	AATAAA	-32	NA	83688245	83715295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83688526_83710080_83710269_83714521
transcript_112041.known	chr6	-	4063	2	FSM	ENSMUSG00000085794.6	ENSMUST00000155159.4	4063	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAACAAAAGTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	83687914	83677138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83681003_83687715
transcript_112043.known	chr6	+	1999	14	FSM	ENSMUSG00000006269.8	ENSMUST00000006431.8	1999	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.43498139278289	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGCATGTTTTTAATCCC	3324	False	NA	NA	False	TTTAAA	-20	NA	83719971	83735837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83720185_83726835_83726892_83729088_83729188_83729364_83729459_83729831_83729910_83730748_83730889_83731706_83731809_83732368_83732467_83733169_83733294_83733534_83733686_83733830_83733914_83734832_83734938_83735096_83735227_83735311
transcript_112044.known	chr6	-	2984	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGTAGTGTGTGACC	9712	False	NA	-4	True	NA	NA	NA	83752795	83745866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
transcript_112052.known	chr6	-	2265	4	FSM	ENSMUSG00000014748.14	ENSMUST00000125614.8	2265	4	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_1	49.358101890391	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9735	False	NA	NA	False	AAAAAG	-38	NA	83752772	83747397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83749292_83750691_83750846_83751999_83752080_83752635
transcript_112057.known	chr6	+	1323	10	FSM	ENSMUSG00000034744.14	ENSMUST00000113851.8	1323	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	71.6054001687955	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	9304	False	NA	11	True	AATAAA	-19	NA	83772009	83779536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_11206.known	chr10	-	2601	4	FSM	ENSMUSG00000035673.11	ENSMUST00000217683.2	2601	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	5.55777733351102	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGTCTGCCATTCAGTC	NA	False	NA	NA	False	AATAGA	-10	NA	79938477	79916243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79918561_79920074_79920149_79922090_79922267_79938443
transcript_112060.known	chr6	+	1405	10	FSM	ENSMUSG00000034744.14	ENSMUST00000037376.14	1405	10	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	21.8281729836116	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9258	False	NA	13	True	AATAAA	-21	NA	83771963	83779538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83772265_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_112062.nnic	chr6	+	1301	10	NNC	ENSMUSG00000034744.14	novel	1405	10	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	77.5253045108897	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	9461	False	NA	11	True	AATAAA	-19	NA	83772166	83779536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_83772265_83773888_83774075_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_112064.known	chr6	+	1049	10	FSM	ENSMUSG00000034744.14	ENSMUST00000146117.8	1049	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	70.680816193489	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAAGTTGCGGCATTCTT	9484	False	NA	NA	False	NA	NA	NA	83772189	83779316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83772357_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_112069.known	chr6	+	752	1	FSM	ENSMUSG00000034744.14	ENSMUST00000205681.2	752	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83773223	83773975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83773200_83774000
transcript_112071.known	chr6	-	3982	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_4	4.71036092035419	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTGGCCTCTGTCTATC	NA	False	NA	NA	False	AATAAA	-13	NA	83808723	83782382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
transcript_112073.known	chr6	-	649	4	FSM	ENSMUSG00000045896.15	ENSMUST00000145593.8	649	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.98887651569859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGTTAGAAGCCTGAA	NA	False	NA	NA	False	NA	NA	NA	83808695	83786693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83787058_83791703_83791852_83808252_83808311_83808616
transcript_112075.known	chr6	-	2150	3	FSM	ENSMUSG00000045896.15	ENSMUST00000142806.2	2150	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	2	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	83808695	83789838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_83791852_83808252_83808311_83808616
transcript_112076.known	chr6	+	547	1	FSM	ENSMUSG00000108107.3	ENSMUST00000203728.3	547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGATCTTACTGTTAATAA	NA	False	NA	NA	False	NA	NA	NA	83818663	83819210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83818700_83819200
transcript_112078.known	chr6	+	6199	28	FSM	ENSMUSG00000030016.15	ENSMUST00000032088.14	6199	28	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_24	71.435679050644	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATTCATTTAGGGTCCA	NA	False	NA	NA	False	AAGAAA	-41	NA	83891373	83963631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
transcript_112082.known	chr6	+	9033	27	FSM	ENSMUSG00000030016.15	ENSMUST00000204751.3	9033	27	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	85.3890158256238	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	83891348	83966532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83891472_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
transcript_112086.nic	chr6	+	4411	26	NIC	ENSMUSG00000030016.15	novel	4356	26	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_22	83.1527365755331	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	83891322	83963853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83958665_83958768_83960957_83961057_83961758_83961878_83963539
transcript_112090.nic	chr6	+	4309	25	NIC	ENSMUSG00000030016.15	novel	4366	26	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_22	82.4636283460775	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	83891322	83963853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83960957_83961057_83961758_83961878_83963539
transcript_112095.nic	chr6	+	5029	24	ISM	ENSMUSG00000030016.15	ENSMUST00000032088.14	6199	28	-51	7549	-26	-2737	5prime_fragment	FALSE	canonical	3	182	junction_11	46.1384044256947	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCCCTCAAAATTTCTC	NA	False	NA	NA	False	ATTAAA	-13	NA	83891322	83956082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975
transcript_112099.nic	chr6	+	4258	24	NIC	ENSMUSG00000030016.15	novel	4356	26	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_20	89.841343037126	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	83891322	83963853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83958665_83958768_83960957_83961057_83961758_83961878_83963539
transcript_112108.nic	chr6	+	4876	22	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	-26	-2737	combination_of_known_junctions	FALSE	canonical	3	92	junction_11	54.1677917203936	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCCCTCAAAATTTCTC	NA	False	NA	NA	False	ATTAAA	-13	NA	83891322	83956082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975
transcript_112117.nic	chr6	+	3160	16	ISM	ENSMUSG00000030016.15	ENSMUST00000032088.14	6199	28	-51	24542	-26	-3427	5prime_fragment	FALSE	canonical	3	182	junction_11	49.9009685944739	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAGAATTTATGATAACT	NA	False	NA	NA	False	CATAAA	-3	NA	83891322	83939089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958
transcript_112125.known	chr6	+	2806	12	FSM	ENSMUSG00000030016.15	ENSMUST00000204202.3	2806	12	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_11	37.2554283581435	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGACAACTGAGGGAGAG	NA	False	NA	NA	False	AAAACA	-2	NA	83891354	83933744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675
transcript_112131.nic	chr6	+	2599	8	ISM	ENSMUSG00000030016.15	ENSMUST00000204202.3	2806	12	-32	8828	-26	3215	5prime_fragment	FALSE	canonical	3	285	junction_4	13.5405664126546	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACAGGTAAATTGAATTT	NA	False	NA	NA	False	GATAAA	-40	NA	83891322	83924916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800
transcript_112135.nic	chr6	+	1067	7	NIC	ENSMUSG00000030016.15	novel	2806	12	NA	NA	-7	3215	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	98.2542054514151	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACAGGTAAATTGAATTT	NA	False	NA	NA	False	GATAAA	-40	NA	83891341	83924916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_83891462_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800
transcript_112136.known	chr6	+	3300	2	FSM	ENSMUSG00000030016.15	ENSMUST00000204580.3	3300	2	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAACAAATAT	NA	False	NA	NA	False	NA	NA	NA	83891352	83908825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83891462_83905634
transcript_112138.known	chr6	+	4366	26	FSM	ENSMUSG00000030016.15	ENSMUST00000113836.6	4366	26	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_22	87.4304294853914	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891371	83963851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953337_83958663_83958768_83960957_83961057_83961758_83961878_83963539
transcript_112139.known	chr6	+	2991	15	FSM	ENSMUSG00000030016.15	ENSMUST00000203455.3	2991	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	93.2045424574032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAGAAATAAACAAAAAATC	NA	False	NA	NA	False	TTTAAA	-8	NA	83891355	83942516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83891472_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510
transcript_112140.known	chr6	+	6474	56	FSM	ENSMUSG00000033788.16	ENSMUST00000204987.3	6474	56	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.31245281390322	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCAGGCTGCCTCCTGGCC	NA	False	NA	NA	False	NA	NA	NA	83996366	84187839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83996591_84014215_84014272_84016487_84016580_84035400_84035507_84040302_84040418_84041857_84042070_84043925_84044055_84044435_84044499_84045034_84045086_84047154_84047186_84047860_84047977_84049614_84049742_84050843_84050948_84060697_84060767_84060895_84060940_84064773_84064857_84073458_84073501_84074689_84074806_84075134_84075249_84076397_84076576_84077135_84077261_84078844_84078952_84083791_84083985_84085028_84085185_84088837_84088970_84089048_84089216_84090266_84090382_84090580_84090687_84090957_84091101_84093029_84093204_84106452_84106547_84107097_84107176_84114199_84114382_84116992_84117134_84117638_84117669_84118904_84118935_84126656_84126759_84126855_84127018_84128865_84129032_84129314_84129392_84134120_84134184_84156653_84156753_84162939_84163069_84163334_84163491_84165186_84165279_84166665_84166837_84167736_84167880_84169877_84170018_84171300_84171390_84171646_84171743_84172159_84172302_84176729_84176830_84180164_84180344_84182765_84182876_84184074_84184223_84187774
transcript_112141.known	chr6	+	6660	55	FSM	ENSMUSG00000033788.16	ENSMUST00000081904.7	6660	55	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	2.2089107483331	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCCTGAATGAGCGAGAC	NA	False	NA	NA	False	TATAAA	-38	NA	83996370	84188041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_83996591_84014215_84014272_84016487_84016580_84035400_84035507_84040302_84040418_84041452_84041546_84041857_84042070_84043925_84044055_84044435_84044499_84045034_84045086_84047154_84047186_84047860_84047977_84049614_84049742_84050843_84050948_84060697_84060767_84060895_84060940_84064773_84064857_84074689_84074806_84075134_84075249_84076397_84076576_84077135_84077261_84078844_84078952_84083791_84083985_84085028_84085185_84088837_84088970_84089048_84089216_84090266_84090382_84090580_84090687_84090957_84091101_84093029_84093204_84106452_84106547_84107097_84107176_84114199_84114382_84116992_84117134_84117638_84117669_84118904_84118935_84126656_84126759_84126855_84127018_84128865_84129032_84129314_84129392_84156653_84156753_84162939_84163069_84163334_84163491_84165186_84165279_84166665_84166837_84167736_84167880_84169877_84170018_84171300_84171390_84171646_84171743_84172159_84172302_84176729_84176830_84180164_84180344_84182765_84182876_84184074_84184223_84187774
transcript_112146.known	chr6	-	5439	22	FSM	ENSMUSG00000033769.17	ENSMUST00000160197.6	5439	22	0	0	0	0	multi-exon	TRUE	canonical	3	201	junction_13	26.9684454901315	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTTGTCTTGTGAGAT	NA	False	NA	-2	True	ATTAAA	-30	NA	85046495	84595468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_84598494_84602106_84602220_84723882_84723957_84768222_84768365_84812022_84812203_84820990_84821126_84825747_84825860_84828832_84828943_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_84988299_84988466_85046277
transcript_11215.known	chr10	+	3663	11	FSM	ENSMUSG00000003068.18	ENSMUST00000144883.8	3663	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	30.2019866896203	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGGCTATGAGGGTGT	2647	False	NA	19	True	AATAAA	-14	NA	79951636	79966303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79952742_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79964224_79965535_79965738_79965946_79966089
transcript_112153.known	chr6	-	565	3	FSM	ENSMUSG00000033769.17	ENSMUST00000162786.2	565	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	24	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATCATTGAGTAGT	NA	False	NA	NA	False	AATAAA	-31	NA	85046457	84981799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_84982019_84988299_84988466_85046277
transcript_112154.known	chr6	-	1230	3	FSM	ENSMUSG00000033735.10	ENSMUST00000045986.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	5	510	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGTGTGCGTTGTCCTTC	7982	False	NA	NA	False	AATACA	-21	NA	85114748	85110659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85111271_85113804_85114096_85114420
transcript_112155.known	chr6	+	1561	3	FSM	ENSMUSG00000033726.9	ENSMUST00000045942.9	1561	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACATTTCTGTTTTAATT	9420	False	NA	NA	False	NA	NA	NA	85164419	85181340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85165346_85171019_85171205_85180890
transcript_112156.known	chr6	-	1081	13	FSM	ENSMUSG00000033720.13	ENSMUST00000059034.13	1081	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.88193607763176	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATGATCTCCCTGGCTC	NA	False	NA	NA	False	AATAAA	-14	NA	85310401	85211361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85211606_85211744_85211831_85213821_85213938_85233324_85233416_85244853_85244920_85246079_85246137_85246891_85246946_85264031_85264058_85266158_85266214_85266743_85266771_85276521_85276600_85296503_85296573_85310289
transcript_112165.known	chr6	-	6119	6	FSM	ENSMUSG00000051343.12	ENSMUST00000204087.2	6119	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	21.2188595357997	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCTTGTGTGTTTGTT	NA	False	NA	-2	True	AATAAA	-16	NA	85351616	85311948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85314209_85314462_85314653_85317324_85319344_85324761_85325438_85325536_85325974_85351079
transcript_112169.known	chr6	-	4035	5	FSM	ENSMUSG00000051343.12	ENSMUST00000060837.10	4035	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	41.9344726925235	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTTTGTTTTGAA	NA	False	NA	3	True	AATAAA	-21	NA	85351546	85311943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85314209_85314462_85314653_85324761_85325438_85325536_85325974_85351079
transcript_112175.known	chr6	+	2486	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	1089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAACAATGCCTTGTGGGG	NA	False	NA	28	True	AATAAA	-22	NA	85408970	85423417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
transcript_112190.known	chr6	+	746	1	FSM	ENSMUSG00000033706.14	ENSMUST00000204615.2	746	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-2	NA	85409054	85409800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85409100_85409800
transcript_112195.known	chr6	+	2441	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	0	0	0	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	5766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	4610	False	NA	16	True	AGTAAA	-18	NA	85428495	85445457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
transcript_1122.known	chr1	-	7251	16	FSM	ENSMUSG00000026110.16	ENSMUST00000151952.8	7251	16	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_15	49.471158825679	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGGATAGAATTTTTTT	NA	False	NA	42	True	AATAAA	-16	NA	37580097	37478420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_37483767_37483887_37484001_37488176_37488244_37489409_37489489_37491311_37491506_37491602_37491711_37493824_37493956_37495670_37495786_37501972_37502049_37503501_37503616_37505617_37505665_37529340_37529475_37534953_37535095_37537653_37537822_37575119_37575486_37580045
transcript_112208.known	chr6	-	953	5	FSM	ENSMUSG00000030008.10	ENSMUST00000126805.8	953	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	38.4991883031318	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCAGCTCCCAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	85428952	85423919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428738
transcript_112213.known	chr6	-	1000	4	FSM	ENSMUSG00000030008.10	ENSMUST00000139875.8	1000	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	61.5593661074865	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGCAACCTCCGTGGA	NA	False	NA	NA	False	NA	NA	NA	85428927	85424189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85424790_85424917_85425028_85425472_85425574_85428738
transcript_112215.known	chr6	-	378	3	FSM	ENSMUSG00000030008.10	ENSMUST00000154918.8	378	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	64	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCGAGATGGGTGAGGGC	NA	False	NA	NA	False	NA	NA	NA	85428206	85424514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85424671_85424917_85425028_85428094
transcript_112216.known	chr6	-	339	3	FSM	ENSMUSG00000030008.10	ENSMUST00000122907.2	339	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTCTCTAAGACCAGGG	NA	False	NA	NA	False	GGGGCT	-5	NA	85428195	85424661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85424790_85424917_85425028_85428094
transcript_112217.known	chr6	+	3884	1	FSM	ENSMUSG00000030007.9	ENSMUST00000205094.2	3884	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAAAAGAAAGCT	5115	False	NA	NA	False	NA	NA	NA	85429000	85432884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85429000_85432900
transcript_112218.known	chr6	-	1038	5	FSM	ENSMUSG00000030008.10	ENSMUST00000032080.9	1038	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	18.9786063766547	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTTGTGCCTGTGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	85428265	85423791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428094
transcript_112220.known	chr6	-	2148	2	FSM	ENSMUSG00000071341.5	ENSMUST00000095759.5	2148	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTGCCTTGTAAAAA	NA	False	NA	NA	False	ATTAAA	-21	NA	85490571	85488102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85489926_85490246
transcript_112221.known	chr6	+	2290	9	FSM	ENSMUSG00000090098.8	ENSMUST00000161983.8	2290	9	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_4	15.0161371530764	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGCTTAGTCCCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	85751374	85781039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85751472_85755981_85757136_85773111_85773230_85774373_85774578_85774856_85775099_85775593_85775748_85776440_85776505_85779959_85780060_85780882
transcript_112223.known	chr6	-	3019	4	FSM	ENSMUSG00000068299.12	ENSMUST00000095757.4	3019	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	4.49691252107735	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGGGTGGATCTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	85881866	85876032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85878596_85878934_85879080_85879173_85879312_85881693
transcript_112226.known	chr6	+	2222	7	FSM	ENSMUSG00000054226.14	ENSMUST00000113753.8	2222	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	87.3983536585342	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTTATTATGTC	3409	False	NA	24	True	NA	NA	NA	85892719	85907266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85892773_85896898_85897007_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
transcript_112230.known	chr6	+	2103	6	FSM	ENSMUSG00000054226.14	ENSMUST00000067137.14	2103	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	21.35790251874	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	3418	False	NA	22	True	NA	NA	NA	85892728	85907264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
transcript_112234.nic	chr6	+	1145	6	NIC	ENSMUSG00000054226.14	novel	2103	6	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	78.5636048052786	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAAAAAAAAAATTA	3436	False	NA	NA	False	NA	NA	NA	85892746	85906007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_85893090_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
transcript_112238.known	chr6	+	475	5	FSM	ENSMUSG00000054226.14	ENSMUST00000201939.4	475	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.0218720100948	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACCACAGGAACACCTAGT	3428	False	NA	NA	False	NA	NA	NA	85892738	85904873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904240_85904346_85904789
transcript_112242.known	chr6	+	692	4	FSM	ENSMUSG00000054226.14	ENSMUST00000113751.8	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	26.1916017074176	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGAGGGGGTTTTGTGTGC	3390	False	NA	NA	False	GGGGCT	-39	NA	85892700	85904590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222
transcript_112244.known	chr6	-	1008	2	FSM	ENSMUSG00000057103.12	ENSMUST00000239124.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTAATGCATGTGATG	9874	False	NA	NA	False	NA	NA	NA	85892659	85887138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85888003_85892515
transcript_112247.nnic	chr6	-	4330	10	NNC	ENSMUSG00000030002.16	novel	6435	9	NA	NA	-11	-2221	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_6	97.2756043922449	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTCTGATATTTAAGT	7309	False	NA	-16	True	AATAAA	-16	NA	85938660	85921470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85932277_85932383_85935565_85935698_85936197_85936274_85938419
transcript_112250.known	chr6	-	6435	9	FSM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_7	14.8070928949608	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTACTATCTTGTATT	7320	False	NA	2	True	NA	NA	NA	85938649	85919249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
transcript_112257.nic	chr6	-	905	4	ISM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	-348	11108	-348	1586	5prime_fragment	FALSE	canonical	3	240	junction_2	16.739839372653	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTAAGTCCTTATGGT	6972	False	NA	NA	False	AATAAA	-3	NA	85938997	85930357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_85930477_85935565_85935698_85936197_85936274_85938419
transcript_112258.nic	chr6	-	728	3	ISM	ENSMUSG00000030002.16	ENSMUST00000134793.2	719	4	-408	3578	-348	1681	5prime_fragment	FALSE	canonical	3	240	junction_1	10.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAACTTGGATTGATAA	6972	False	NA	NA	False	AATAAA	-15	NA	85938997	85935623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_85935698_85936197_85936274_85938419
transcript_112260.known	chr6	+	759	3	FSM	ENSMUSG00000030001.5	ENSMUST00000032070.4	759	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTTGCTTGGAGATGA	NA	False	NA	NA	False	ATTAAA	-22	NA	85994172	85997978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_85994440_85995560_85995714_85997639
transcript_112261.known	chr6	+	4527	6	FSM	ENSMUSG00000029999.15	ENSMUST00000032066.13	4527	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2.89827534923789	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAGACTGAAGTTTTTC	NA	False	NA	NA	False	AATGAA	-21	NA	86172204	86252701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86172528_86206412_86206467_86240140_86240259_86246911_86247062_86248361_86248472_86248929
transcript_112263.known	chr6	+	1643	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	62	3201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTCTTATGGGTAGTG	8617	False	NA	32	True	AATAAA	-16	NA	86342627	86347040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86342802_86343591_86343733_86345712
transcript_112269.known	chr6	+	1055	4	FSM	ENSMUSG00000057278.9	ENSMUST00000089558.7	1055	4	0	0	0	0	multi-exon	FALSE	canonical	3	2623	junction_2	545.029866663796	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGCAGCAGGCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	86348285	86356310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86348597_86352658_86352682_86353476_86353602_86355714
transcript_112270.known	chr6	+	746	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204380.3	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1590.13130135708	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348552	86355889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86348976_86352658_86352682_86353476_86353602_86355714
transcript_112271.known	chr6	-	4295	6	FSM	ENSMUSG00000029998.15	ENSMUST00000032065.15	4295	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	15.4012986465428	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	86374136	86362987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86372895_86373103_86373954
transcript_112284.known	chr6	+	4477	13	FSM	ENSMUSG00000071337.12	ENSMUST00000095753.9	4477	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_5	36.3397356744499	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTAAAGTTCTTTTTT	9681	False	NA	NA	False	AATAAA	-15	NA	86381200	86410387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_112286.known	chr6	+	4326	13	FSM	ENSMUSG00000071337.12	ENSMUST00000113712.10	4326	13	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	49.8522817933141	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGGTCTAGTGACCT	9787	False	NA	NA	False	NA	NA	NA	86381306	86410209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86401326_86401403_86401943_86402186_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_112295.known	chr6	+	3130	12	FSM	ENSMUSG00000071337.12	ENSMUST00000095752.9	3130	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	49.110770393011	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTAAACTTCTACA	9775	False	NA	22	True	AATAAA	-24	NA	86381294	86409167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_112302.known	chr6	+	2630	11	FSM	ENSMUSG00000046679.17	ENSMUST00000141972.8	2630	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	10.36532681588	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1771	False	NA	NA	False	AATAAA	-26	NA	86415673	86447370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86415830_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86431241_86431296_86434797_86434906_86439562_86439664_86442782_86442946_86446727
transcript_112303.known	chr6	+	2534	10	FSM	ENSMUSG00000046679.17	ENSMUST00000050497.14	2534	10	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	6.73483664919633	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1453	False	NA	NA	False	AATAAA	-26	NA	86415355	86447370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86415470_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
transcript_112305.nic	chr6	+	3053	10	NIC	ENSMUSG00000046679.17	novel	2922	10	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	9.7182531580755	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1705	False	NA	NA	False	AATAAA	-26	NA	86415607	86447370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_86416241_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
transcript_112306.nic	chr6	+	2596	10	NIC	ENSMUSG00000046679.17	novel	2630	11	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	6.89784364229722	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1751	False	NA	NA	False	AATAAA	-26	NA	86415653	86447370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_86415830_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
transcript_11231.known	chr10	-	3175	11	FSM	ENSMUSG00000035640.19	ENSMUST00000147778.9	3175	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	10.1788997440784	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGCTCTGGGTTTTC	9074	False	NA	-6	True	CATAAA	-13	NA	79975199	79966384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79968086_79968838_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972523_79972578_79972707_79972773_79972876_79973017_79973121_79973222_79974919
transcript_112312.known	chr6	+	797	6	FSM	ENSMUSG00000071337.12	ENSMUST00000156762.8	797	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	74.1932611495141	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGGGTGTATATTCAT	9785	False	NA	NA	False	NA	NA	NA	86381304	86400845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86400587
transcript_112313.known	chr6	+	935	1	FSM	ENSMUSG00000071337.12	ENSMUST00000203206.2	935	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCGACTAGTGGTTGAC	9697	False	NA	NA	False	ATTAAA	-15	NA	86381216	86382151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86381200_86382200
transcript_112314.known	chr6	+	505	2	FSM	ENSMUSG00000046679.17	ENSMUST00000143430.2	505	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1787	False	NA	NA	False	ATTAAA	-1	NA	86415689	86416470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86415830_86416105
transcript_112315.known	chr6	+	2922	10	FSM	ENSMUSG00000046679.17	ENSMUST00000113698.8	2922	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	11.7263026073655	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1806	False	NA	NA	False	AATAAA	-26	NA	86415708	86447370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86416241_86420708_86420958_86422415_86423251_86424322_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
transcript_112316.known	chr6	-	775	2	FSM	ENSMUSG00000101655.2	ENSMUST00000189386.2	775	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	6996	False	NA	NA	False	AATAAA	-19	NA	86465209	86460357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_86460700_86464776
transcript_112327.nnic	chr6	+	2175	4	NNC	ENSMUSG00000097048.8	novel	609	5	NA	NA	-15	0	intron_retention	FALSE	canonical	3	38	junction_1	36.6454484061648	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTGTATTTTTAAATTT	NA	False	NA	8	True	NA	NA	NA	86503213	86541430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_86504957_86509136_86509290_86540413_86540520_86541257
transcript_112328.known	chr6	+	2099	4	FSM	ENSMUSG00000097048.8	ENSMUST00000180896.8	2099	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	16.5126214353344	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86503252	86541431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86504957_86509174_86509290_86540413_86540520_86541257
transcript_112331.known	chr6	-	1830	1	FSM	ENSMUSG00000051695.7	ENSMUST00000053015.7	1830	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	616	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCGTATTTGAAAGCTGGG	NA	False	NA	-32	True	ATTAAA	-22	NA	86503303	86501473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_86501500_86503300
transcript_112332.known	chr6	+	1547	1	FSM	ENSMUSG00000033508.9	ENSMUST00000043400.9	1547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGTGCTCGATAGTTG	NA	False	NA	NA	False	AATAAA	-22	NA	86605145	86606692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86605100_86606700
transcript_112335.known	chr6	-	4666	6	FSM	ENSMUSG00000001156.10	ENSMUST00000001184.10	4666	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	4.44522215417857	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTCCTGTGTCCCAT	4023	False	NA	NA	False	AATAAA	-19	NA	86646143	86624023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_86628062_86628423_86628584_86630066_86630182_86640052_86640083_86645519_86645617_86645917
transcript_112338.known	chr6	-	822	6	FSM	ENSMUSG00000001158.14	ENSMUST00000131674.2	822	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_5	727.529518301491	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTATTTATGACACCCAG	7677	False	NA	31	True	TATAAA	-9	NA	86661473	86652386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661206
transcript_112339.known	chr6	-	885	6	FSM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	0	0	0	0	multi-exon	FALSE	canonical	3	1763	junction_5	100.541732628794	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATAGACTTGTTTTGTTT	7646	False	NA	1	True	ATTAAA	-29	NA	86661504	86652132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
transcript_112342.nic	chr6	-	313	3	ISM	ENSMUSG00000001158.14	ENSMUST00000113683.2	1005	5	-19	5935	-19	1069	5prime_fragment	FALSE	canonical	3	1763	junction_2	93.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACGGCAGATCACTGGTAA	7627	False	NA	NA	False	NA	NA	NA	86661523	86658588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_86658686_86659837_86659959_86661428
transcript_112344.known	chr6	-	2949	14	FSM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_7	38.1766371135774	508	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTGTTTAAAGTGA	NA	False	NA	-18	True	AATAAA	-20	NA	86710365	86668749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480_86681557_86684384_86684455_86687496_86687635_86688570_86688662_86691156_86691242_86694367_86694434_86694973_86695087_86698322_86698421_86699550_86699648_86703054_86703179_86709892
transcript_112377.known	chr6	-	2002	13	FSM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_5	17.8737858950537	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTATTCTTTCTCTGAT	4606	False	NA	-2	True	ATTAAA	-18	NA	86770566	86713822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
transcript_112379.known	chr6	-	1042	1	FSM	ENSMUSG00000100164.2	ENSMUST00000185414.2	1042	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTTATTTTTCCACCAGC	NA	False	NA	NA	False	AATACA	-24	NA	86826422	86825380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_86825400_86826400
transcript_112383.nic	chr6	+	1232	9	NIC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	210	junction_1	876.96265598941	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	23	True	AATAAA	-29	NA	86986175	87005441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
transcript_11239.known	chr10	+	2566	10	FSM	ENSMUSG00000003068.18	ENSMUST00000003152.14	2566	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	19.2898617266195	1938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACCTGGGCTGTTCTGTC	2647	False	NA	20	True	AATAAA	-24	NA	79951636	79966516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79952742_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79965738_79965946_79966089
transcript_112392.known	chr6	+	1195	9	FSM	ENSMUSG00000029993.17	ENSMUST00000120240.8	1195	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1184.03386248029	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
transcript_112393.known	chr6	+	950	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	0	0	0	0	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	23	True	AATAAA	-29	NA	86986817	87005441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
transcript_112394.known	chr6	+	6238	19	FSM	ENSMUSG00000029992.15	ENSMUST00000113658.8	6238	19	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_15	18.2452429112053	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGACTTTTTCTTTT	9945	False	NA	14	True	AATAAA	-15	NA	87019827	87069179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_87019988_87027902_87028011_87030732_87030841_87031582_87031709_87033125_87033185_87034611_87034747_87036361_87036424_87037502_87037583_87040786_87040893_87043605_87043770_87044665_87044762_87050363_87050462_87053238_87053360_87054064_87054223_87059454_87059570_87062233_87062362_87063285_87063454_87064298_87064461_87065095
transcript_112400.known	chr6	+	2809	1	FSM	ENSMUSG00000029992.15	ENSMUST00000204872.2	2809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9949	False	NA	NA	False	NA	NA	NA	87019831	87022640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_87019800_87022600
transcript_112401.known	chr6	+	1200	4	FSM	ENSMUSG00000029992.15	ENSMUST00000113657.8	1200	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	14.3836326735943	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTCTCAGGATTATATTT	9945	False	NA	NA	False	AATAAA	-14	NA	87019827	87032406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_87019988_87027902_87028011_87030732_87030841_87031582
transcript_112402.known	chr6	-	2493	11	FSM	ENSMUSG00000030047.15	ENSMUST00000101197.9	2493	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.26885775404495	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAAATTGAGCAAGG	NA	False	NA	NA	False	AATAAA	-9	NA	87473296	87436386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87437116_87439912_87440446_87442482_87442680_87443454_87443577_87444894_87444969_87447494_87447628_87453124_87453333_87465173_87465291_87469159_87469248_87472894_87473095_87473204
transcript_112406.nnic	chr6	-	2805	12	NNC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	-24	-7	intron_retention	TRUE	non_canonical	0	0	junction_1	24.981315331713	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCAGTTGCTGTGGCTTA	NA	False	NA	NA	False	AATAAA	-11	NA	87649199	87605412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_87605575_87605982_87606199_87606310_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_112411.nic	chr6	-	2012	10	NIC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	-24	0	intron_retention	FALSE	canonical	3	41	junction_3	13.2030673577893	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGATCTTCTGCCCTGA	NA	False	NA	-7	True	AATAAA	-20	NA	87649199	87606725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_112412.known	chr6	-	3132	10	FSM	ENSMUSG00000030051.11	ENSMUST00000065997.5	3132	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_9	19.726525352153	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGCTTATTTGCAA	NA	False	NA	NA	False	AATAAA	-18	NA	87649129	87605405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648971
transcript_112419.nic	chr6	-	1223	7	ISM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	5	36434	5	-36434	5prime_fragment	TRUE	canonical	3	8	junction_6	5.95585612840188	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCACTTGTCCATCGACC	NA	False	NA	NA	False	ATTAAA	-15	NA	87699778	87689008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
transcript_112420.known	chr6	-	3588	6	FSM	ENSMUSG00000030051.11	ENSMUST00000203776.2	3588	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	26.5028300375639	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTGTGTCTCTTATTT	NA	False	NA	NA	False	CATAAA	-17	NA	87649111	87628072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87630875_87635414_87635538_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_112429.known	chr6	-	5837	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAGATTTGTCAAGGTG	NA	False	NA	NA	False	AATACA	-17	NA	87815780	87791250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
transcript_112437.nic	chr6	-	684	9	ISM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	61	7309	1	0	5prime_fragment	FALSE	canonical	3	216	junction_3	26.9525045218436	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGGGAGAAAAGGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	87815719	87798559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
transcript_112441.known	chr6	-	4605	3	FSM	ENSMUSG00000030055.17	ENSMUST00000078647.11	4605	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTCTATCACCTCTGG	2694	False	NA	7	True	ATTAAA	-27	NA	87788761	87765834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87769823_87771595_87771780_87788328
transcript_112443.known	chr6	-	952	6	FSM	ENSMUSG00000030057.16	ENSMUST00000113617.3	952	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	4719.63282470151	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTTCTGCATTTAACTA	NA	False	NA	-47	True	NA	NA	NA	87828042	87820868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87825996_87826092_87827885
transcript_112446.known	chr6	-	2175	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	0	0	0	0	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	AGTAAA	-12	NA	87828088	87819596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
transcript_112447.known	chr6	-	1614	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204890.3	1614	5	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_3	4411.10218652889	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828012	87820063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822655_87822776_87827885
transcript_112451.known	chr6	-	911	4	FSM	ENSMUSG00000030057.16	ENSMUST00000204596.2	911	4	0	0	0	0	multi-exon	FALSE	canonical	3	8336	junction_2	1451.03694722851	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCAGTGAGCTTTACTTG	NA	False	NA	-99	True	NA	NA	NA	87828004	87820920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87821139_87822103_87822540_87822637_87822776_87827885
transcript_112454.known	chr6	+	1087	1	FSM	ENSMUSG00000107798.2	ENSMUST00000204964.2	1087	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	87828190	87829277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_87828200_87829300
transcript_112471.known	chr6	+	4140	24	FSM	ENSMUSG00000030058.18	ENSMUST00000113607.10	4140	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	198.307183759023	3713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	AATAAA	-15	NA	87864795	87890577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
transcript_1125.known	chr1	-	4634	10	FSM	ENSMUSG00000026090.17	ENSMUST00000162875.8	4634	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.83278861866266	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCTCTGTGCGTCAAT	NA	False	NA	-1	True	AATAAA	-15	NA	37759166	37650757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_37651478_37652417_37652563_37653561_37653750_37662841_37665150_37667297_37667508_37670401_37670564_37670896_37671033_37676941_37677111_37683641_37683722_37758650
transcript_112539.known	chr6	+	1464	7	FSM	ENSMUSG00000030060.15	ENSMUST00000032141.14	1464	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	428.702078630629	826	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	2964	False	NA	44	True	AATAAA	-30	NA	87890916	87913611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_87890994_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
transcript_112542.known	chr6	+	921	5	FSM	ENSMUSG00000030058.18	ENSMUST00000049966.6	921	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	373.284408996679	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGCCTCTTACCCAGTT	NA	False	NA	NA	False	AAAACA	-14	NA	87864909	87867741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171
transcript_112547.nic	chr6	-	2241	7	NIC	ENSMUSG00000079477.10	novel	1657	8	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	112	junction_6	799.58419749823	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022247	87976087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
transcript_112550.known	chr6	-	2159	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	0	0	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	1130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022252	87976087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
transcript_112555.known	chr6	-	1217	1	FSM	ENSMUSG00000044927.7	ENSMUST00000056403.7	1217	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTCGTTGTCTTGTGG	6909	False	NA	-2	True	AATAAA	-16	NA	87958619	87957402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_87957400_87958600
transcript_112564.known	chr6	+	3633	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	0	0	0	0	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	4065	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGTATGCTTGTTAGA	537	False	NA	NA	False	AATAAA	-15	NA	88061463	88082286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
transcript_112582.known	chr6	+	3135	6	FSM	ENSMUSG00000015053.15	ENSMUST00000170089.8	3135	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	57.164324538999	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCGCCTGTTGAGTGG	NA	False	NA	14	True	AATAAA	-15	NA	88170872	88184014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_88170983_88176498_88176772_88177200_88177843_88179400_88179547_88181564_88181691_88182176
transcript_112584.known	chr6	+	3571	6	FSM	ENSMUSG00000015053.15	ENSMUST00000015197.9	3571	6	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	9.31665175908169	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCGCCTGTTGAGT	NA	False	NA	12	True	AATAAA	-13	NA	88175315	88184012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_88175864_88176498_88176772_88177200_88177843_88179400_88179547_88181564_88181691_88182176
transcript_112599.known	chr6	-	2679	7	FSM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	0	0	0	0	multi-exon	TRUE	canonical	3	371	junction_3	47.1643108952333	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGTGATCAAATGACTT	NA	False	NA	-8	True	ATTAAA	-16	NA	88423521	88234315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_88235374_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_11260.known	chr10	+	1619	10	FSM	ENSMUSG00000003068.18	ENSMUST00000105371.9	1619	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.9143310244614	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGCTATGAGGGTGTT	3191	False	NA	20	True	AATAAA	-15	NA	79952180	79966304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79952551_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79965738_79965946_79966089
transcript_112605.nic	chr6	-	1554	6	NIC	ENSMUSG00000033216.10	novel	2208	8	NA	NA	-74	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_2	158.228189650264	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTAGTGTGCCCATAGT	NA	False	NA	-17	True	AATAAA	-12	NA	88423595	88234854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_88235374_88258530_88258688_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_112612.nnic	chr6	-	1045	5	NNC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	-8	-14470	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	202.243664919324	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTGCCAAGCCCCAGTAT	NA	False	NA	NA	False	TTTAAA	-4	NA	88423529	88289557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_88289791_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_112617.known	chr6	-	2208	8	FSM	ENSMUSG00000033216.10	ENSMUST00000205179.3	2208	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	203.93836603949	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTAGTGTGCCCATAGT	NA	False	NA	-17	True	AATAAA	-12	NA	88423509	88234854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_88235374_88249003_88249084_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_112618.known	chr6	+	1675	11	FSM	ENSMUSG00000030079.16	ENSMUST00000032165.16	1675	11	0	0	0	0	multi-exon	FALSE	canonical	3	1160	junction_1	83.5499850388975	897	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGTTTTTATATTTTAC	NA	False	NA	31	True	AATAAA	-31	NA	88442390	88474554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88462694_88462894_88468497_88468601_88473389_88473482_88474209
transcript_112626.known	chr6	-	3172	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	0	0	0	0	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	3157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCAGAAAGCTTGTTGT	9095	False	NA	5	True	AATAAA	-39	NA	88495887	88480560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
transcript_112636.known	chr6	-	935	5	FSM	ENSMUSG00000030082.15	ENSMUST00000130918.8	935	5	0	0	0	0	multi-exon	FALSE	canonical	3	957	junction_4	50.4548065103811	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAACTCGGTGGGAAAG	9227	False	NA	NA	False	NA	NA	NA	88495755	88490792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
transcript_112637.known	chr6	+	3676	8	FSM	ENSMUSG00000033174.18	ENSMUST00000113585.9	3676	8	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	2.55550625999976	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTGTCTGCGTGTCTG	NA	False	NA	5	True	AATAAA	-20	NA	88701393	88805342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_88701554_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
transcript_112639.known	chr6	+	3867	8	FSM	ENSMUSG00000033174.18	ENSMUST00000089449.5	3867	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	4.18939379960434	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTGTCTGCGTGTCTG	NA	False	NA	5	True	AATAAA	-20	NA	88701809	88805342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_88702161_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
transcript_112641.known	chr6	-	1774	12	FSM	ENSMUSG00000030083.12	ENSMUST00000203137.3	1774	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	157.288543608278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGGGGACCTGAGCCTG	6970	False	NA	-14	True	AATAAA	-11	NA	88818876	88812905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_88813435_88813506_88813708_88815099_88815248_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817854_88817883_88818750
transcript_112643.known	chr6	-	1845	12	FSM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_10	111.135015794021	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	6964	False	NA	-4	True	AATAAA	-21	NA	88818882	88812895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
transcript_112644.nic	chr6	-	1824	12	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	132.928800926295	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	6950	False	NA	-4	True	AATAAA	-21	NA	88818896	88812895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817854_88817883_88818750
transcript_112647.nic	chr6	-	1938	11	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	14	0	intron_retention	FALSE	canonical	3	163	junction_10	101.098170112025	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	6943	False	NA	-4	True	AATAAA	-21	NA	88818903	88812895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817883_88818750
transcript_112658.nic	chr6	-	1591	8	ISM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	2268	0	-43	0	intron_retention	FALSE	canonical	3	333	junction_3	29.2665442484229	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	9232	False	NA	-4	True	AATAAA	-21	NA	88816614	88812895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312
transcript_11266.known	chr10	-	3121	10	FSM	ENSMUSG00000035640.19	ENSMUST00000105369.8	3121	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_6	10.6817023658263	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGCTCTGGGTTTTC	9074	False	NA	-6	True	CATAAA	-13	NA	79975199	79966384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_79968086_79968838_79969020_79970394_79970603_79970951_79971081_79971208_79971381_79972183_79972329_79972707_79972773_79972876_79973017_79973121_79973222_79974919
transcript_112674.known	chr6	-	2065	8	FSM	ENSMUSG00000033152.14	ENSMUST00000145944.3	2065	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	2.71804251292006	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACGCGCGGGCCGCTCCG	NA	False	NA	NA	False	ATTAAA	-7	NA	88852026	88819560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_88819959_88820488_88820669_88822047_88822110_88822514_88822672_88825716_88825792_88826176_88826971_88841998_88842272_88851900
transcript_112695.known	chr6	-	3371	16	FSM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	0	0	0	0	multi-exon	FALSE	canonical	1	1040	junction_8	575.928791894739	4401	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	-3	True	AATAAA	-16	NA	88875762	88860455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
transcript_112757.known	chr6	+	1738	12	FSM	ENSMUSG00000002871.15	ENSMUST00000204765.3	1738	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	17.59319928714	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879314	88889213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
transcript_112759.nnic	chr6	+	1820	12	NNC	ENSMUSG00000002871.15	novel	1820	12	NA	NA	8	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	33.0236579359567	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879240	88889213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_88879513_88882922_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
transcript_112780.known	chr6	-	1121	8	FSM	ENSMUSG00000030086.17	ENSMUST00000032172.14	1121	8	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_4	25.4486277245203	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCACCCAGTCACTTCTG	NA	False	NA	-5	True	AATAAA	-32	NA	89572634	89360132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89444371_89444456_89544568_89544714_89546324_89546395_89551349_89551573_89572440
transcript_112782.known	chr6	-	1042	7	FSM	ENSMUSG00000030086.17	ENSMUST00000113550.6	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	87.7648373021147	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGTCACTTCTGTTGAC	NA	False	NA	0	True	AATAAA	-37	NA	89572634	89360127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89544568_89544714_89546324_89546395_89551349_89551573_89572440
transcript_112785.known	chr6	+	2836	16	FSM	ENSMUSG00000000811.15	ENSMUST00000000828.14	2836	16	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_10	10.7467824642231	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTTTTTTTCTGAA	NA	False	NA	91	True	ATTAAA	-13	NA	89620969	89652511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_89621385_89627507_89627569_89628480_89628591_89631035_89631141_89631330_89631404_89633009_89633130_89638440_89638584_89640058_89640175_89641359_89641586_89642681_89642775_89646286_89646364_89646799_89646957_89649152_89649261_89649949_89650046_89651042_89651178_89651710
transcript_112789.known	chr6	-	1653	3	FSM	ENSMUSG00000056643.6	ENSMUST00000070890.6	1653	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGGGGGCTTCTCTACT	NA	False	NA	NA	False	AATAAA	-21	NA	90302167	90285330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_90286790_90295240_90295324_90302056
transcript_112790.known	chr6	-	2072	17	FSM	ENSMUSG00000048794.15	ENSMUST00000165673.5	2072	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.79299853597263	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGGCCTGCTGAAGGGAGT	NA	False	NA	NA	False	AATAAA	-22	NA	90405395	90380719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_90380975_90382331_90382426_90382999_90383206_90383937_90384074_90386323_90386476_90386583_90386633_90389128_90389259_90389334_90389374_90389826_90390009_90390360_90390442_90390693_90390858_90390942_90391011_90392681_90392875_90394591_90394693_90396357_90396439_90404419_90404526_90405360
transcript_112792.nnic	chr6	+	4219	11	NNC	ENSMUSG00000034430.17	novel	4126	10	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	37.2210961687052	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGCGCTGCTTTCATT	NA	False	NA	12	True	AATAAA	-25	NA	90346436	90380472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_90347551_90349523_90349677_90349768_90349848_90350692_90350824_90355765_90355937_90358813_90359503_90361149_90361235_90375743_90375914_90376053_90376108_90377763_90377866_90379001
transcript_112794.known	chr6	+	4126	10	FSM	ENSMUSG00000034430.17	ENSMUST00000075117.10	4126	10	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	20.7762922820135	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGCGCTGCTTTCATT	NA	False	NA	12	True	AATAAA	-25	NA	90346475	90380472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_90347551_90349523_90349677_90349768_90349848_90350692_90350824_90355765_90355937_90358813_90359503_90361149_90361235_90375743_90375914_90377763_90377866_90379001
transcript_112796.nic	chr6	+	2396	7	ISM	ENSMUSG00000034430.17	ENSMUST00000075117.10	4126	10	-39	19264	-37	11	5prime_fragment	FALSE	canonical	3	63	junction_6	15.9024805891688	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAAAGGAACTGGGAGCG	NA	False	NA	NA	False	AAGAAA	-6	NA	90346436	90361208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_90347551_90349523_90349677_90349768_90349848_90350692_90350824_90355765_90355937_90358813_90359503_90361149
transcript_112798.known	chr6	+	4864	6	FSM	ENSMUSG00000034430.17	ENSMUST00000113539.8	4864	6	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_4	6.06630035524124	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTACTACATGCAAGCCAAC	NA	False	NA	NA	False	AATAAA	-28	NA	90346473	90362066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_90347551_90349523_90349677_90349768_90349848_90350692_90350824_90355765_90355937_90358813
transcript_112803.known	chr6	-	289	3	FSM	ENSMUSG00000048794.15	ENSMUST00000135757.3	289	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGCCTTTCCCGTGAAC	NA	False	NA	NA	False	AATAAA	-14	NA	90405377	90403465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_90403632_90404419_90404526_90405360
transcript_112804.known	chr6	+	2961	2	FSM	ENSMUSG00000034430.17	ENSMUST00000137483.2	2961	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAAAAATCTAGCT	NA	False	NA	NA	False	NA	NA	NA	90346599	90351533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_90347551_90349523
transcript_112814.known	chr6	+	2373	3	FSM	ENSMUSG00000030087.12	ENSMUST00000032174.12	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_2	6.5	1098	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATTTTTTGGCCCTGTA	NA	False	NA	28	True	AATAAA	-24	NA	90439557	90452220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_90439708_90443401_90444506_90451101
transcript_112826.known	chr6	+	3052	23	FSM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	30.2788691558217	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	13	True	AATAAA	-23	NA	90527786	90576151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_90527880_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_112829.known	chr6	+	4175	23	FSM	ENSMUSG00000030088.16	ENSMUST00000130418.8	4175	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	39.2549675753126	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTGTCTCTGTGTT	NA	False	NA	NA	False	TTTAAA	-17	NA	90527770	90577185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_90527953_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_112850.known	chr6	+	2412	11	FSM	ENSMUSG00000030089.16	ENSMUST00000044019.16	2412	11	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	19.246038553427	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGTGTCCTCCATCCTTC	9924	False	NA	NA	False	AATAAA	-17	NA	90581706	90623394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_90581991_90588860_90589164_90601793_90601902_90603361_90603434_90610592_90610738_90612231_90612379_90613838_90613984_90617865_90617946_90619192_90619328_90621066_90621216_90622550
transcript_112851.known	chr6	-	8036	14	FSM	ENSMUSG00000034312.16	ENSMUST00000101153.10	8036	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13.5733815385309	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAACAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	90693511	90633069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_90638008_90641003_90641054_90644881_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90693189
transcript_112856.nic	chr6	-	3283	12	NIC	ENSMUSG00000034312.16	novel	8036	14	NA	NA	-111	2844	intron_retention	FALSE	canonical	3	17	junction_11	8.08835506164917	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGAGCCGCTGGGCCTT	2736	False	NA	NA	False	AATGAA	-17	NA	90713780	90644546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_90645059_90645622_90645785_90646267_90646368_90647390_90647517_90648583_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561_90667809_90671540_90671833_90713558
transcript_112859.known	chr6	-	6893	40	FSM	ENSMUSG00000030091.18	ENSMUST00000113509.2	6893	40	0	0	0	0	multi-exon	FALSE	non_canonical	2	13	junction_25	73.2448632562406	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGCGGTGGTTCTTGG	NA	False	NA	-4	True	AATAAA	-18	NA	91093801	90990051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528_91017709_91017829_91017893_91019236_91019373_91019487_91019616_91020728_91020858_91030353_91030456_91030546_91030652_91031371_91031479_91032206_91032400_91037543_91037586_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
transcript_112860.known	chr6	-	7037	40	FSM	ENSMUSG00000030091.18	ENSMUST00000032179.14	7037	40	0	0	0	0	multi-exon	FALSE	non_canonical	3	302	junction_34	44.9993644487226	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGCGGTGGTTCTTGGGG	NA	False	NA	-2	True	AATAAA	-20	NA	91093811	90990049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528_91017709_91017829_91017893_91019236_91019373_91019487_91019616_91020728_91020858_91030353_91030456_91030546_91030652_91031371_91031479_91032206_91032400_91037543_91037718_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
transcript_112868.nic	chr6	-	2576	17	ISM	ENSMUSG00000030091.18	ENSMUST00000032179.14	7037	40	-17	42164	-17	-2650	5prime_fragment	FALSE	non_canonical	3	302	junction_11	38.559815546758	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATGGTGAGCCAGGTCT	NA	False	NA	NA	False	AAGAAA	-1	NA	91093828	91032213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_91032400_91037543_91037718_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
transcript_112872.known	chr6	-	2440	1	FSM	ENSMUSG00000030091.18	ENSMUST00000203434.2	2440	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAATTTCACCCTT	NA	False	NA	NA	False	NA	NA	NA	91093778	91091338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_91091300_91093800
transcript_112873.known	chr6	+	2653	10	FSM	ENSMUSG00000034245.11	ENSMUST00000041736.11	2653	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	4.60541817245838	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGGCAGCTGCCCAAGAT	NA	False	NA	29	True	AATAAA	-31	NA	91133646	91151674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91133830_91134378_91134528_91136142_91136244_91142542_91142660_91143224_91143268_91144785_91144863_91145790_91145854_91146376_91146474_91149146_91149326_91150030
transcript_112875.known	chr6	+	4644	17	FSM	ENSMUSG00000064080.13	ENSMUST00000113498.9	4644	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	5.3370755100523	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGTCTCTTTGACTTCT	NA	False	NA	NA	False	ATTAAA	-26	NA	91189436	91249521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91189883_91210044_91211334_91227839_91227952_91229425_91229556_91231422_91231604_91233216_91233427_91233861_91233976_91234706_91234809_91240320_91240456_91241680_91241819_91242699_91242844_91242937_91243067_91243296_91243423_91245519_91245637_91246069_91246199_91246945_91247070_91248503
transcript_112882.known	chr6	+	486	2	FSM	ENSMUSG00000100680.2	ENSMUST00000186472.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTCTACACTCATTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	91417968	91418737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91418141_91418423
transcript_112883.known	chr6	-	3472	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	0	0	0	0	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTATGCAGTACATGATCT	NA	False	NA	NA	False	NA	NA	NA	91450528	91439153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_91442296_91444664_91444764_91450297
transcript_112884.known	chr6	-	1854	1	FSM	ENSMUSG00000034203.9	ENSMUST00000205802.2	1854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91450431	91448577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_91448600_91450400
transcript_112890.known	chr6	+	2903	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_7	13.7209497779825	449	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCGTTTGCTGTTGCA	9688	False	NA	NA	False	AATAAA	-30	NA	91450684	91465445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
transcript_1129.known	chr1	-	1981	8	FSM	ENSMUSG00000060771.16	ENSMUST00000193669.2	1981	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	7.29830844253989	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATGAAATCATTA	NA	False	NA	NA	False	NA	NA	NA	37904154	37873351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_37874417_37874502_37874674_37879579_37879739_37880265_37880390_37881535_37881602_37888311_37888528_37894325_37894455_37904103
transcript_112900.known	chr6	-	3634	16	FSM	ENSMUSG00000030094.9	ENSMUST00000032182.5	3634	16	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	18.0017283120878	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGGCTGCAAATTTATT	369	False	NA	0	True	AATAAA	-16	NA	91492870	91466286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_91467249_91468202_91468293_91469252_91469347_91469823_91469994_91470086_91470222_91473069_91473152_91475011_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
transcript_112910.nic	chr6	-	2639	14	ISM	ENSMUSG00000030094.9	ENSMUST00000032182.5	3634	16	-59	2968	-59	0	5prime_fragment	FALSE	canonical	3	87	junction_12	17.3876784231462	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGAGTTATATGAACGAG	310	False	NA	NA	False	AATGAA	-29	NA	91492929	91469254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_91469347_91469823_91469994_91470086_91470222_91473069_91473152_91475011_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
transcript_112913.nic	chr6	-	2414	10	ISM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	-90	5441	-1	-5441	5prime_fragment	FALSE	canonical	3	87	junction_8	18.5099239315189	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAGGCTGTAGAAGTGTT	372	False	NA	NA	False	AATAAA	-17	NA	91492867	91474695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
transcript_112915.nic	chr6	-	2074	9	ISM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	-88	6853	1	-6853	5prime_fragment	FALSE	canonical	3	87	junction_7	19.6273883896967	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGACATACTTTTCTATT	374	False	NA	NA	False	AATATA	-16	NA	91492865	91476107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
transcript_112917.known	chr6	+	618	4	FSM	ENSMUSG00000034192.6	ENSMUST00000206947.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	387.955610290089	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTTTTTTTTAATG	NA	False	NA	42	True	ATTAAA	-18	NA	91493029	91499602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
transcript_112920.known	chr6	+	520	3	FSM	ENSMUSG00000034192.6	ENSMUST00000126253.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	469.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCCTGCCCCAACATGG	NA	False	NA	NA	False	NA	NA	NA	91492938	91496817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91493061_91494029_91494141_91496530
transcript_112921.known	chr6	+	504	2	FSM	ENSMUSG00000034192.6	ENSMUST00000123569.3	504	2	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGGTTTAGACAAGGTC	NA	False	NA	NA	False	AATAAA	-12	NA	91493028	91494501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91493061_91494029
transcript_112931.known	chr6	+	6186	15	FSM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_10	29.4144383538675	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGGTGTGTTTCGGAGT	NA	False	NA	31	True	AATAAA	-25	NA	91661033	91736047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
transcript_112940.nic	chr6	+	2704	14	NIC	ENSMUSG00000030096.9	novel	738	6	NA	NA	-191	2746	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	98.2890917758943	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAATGCTGGGTGGAATT	NA	False	NA	NA	False	NA	NA	NA	91678446	91732505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_91678807_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
transcript_112949.known	chr6	+	1553	5	FSM	ENSMUSG00000030096.9	ENSMUST00000206835.2	1553	5	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	28.2167946443249	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAATCTCCTTGTGTTAA	NA	False	NA	NA	False	AATAGA	-20	NA	91661075	91703912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992
transcript_112954.known	chr6	+	1752	11	FSM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_7	17.7876361554873	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGAGGAACTTGTTTCTT	NA	False	NA	12	True	TATAAA	-16	NA	91855033	91876824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875127_91875281_91876272
transcript_112960.known	chr6	+	625	5	FSM	ENSMUSG00000034083.17	ENSMUST00000139240.2	625	5	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_3	4.81534007106456	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATCGTTATTATGGCAA	NA	False	NA	NA	False	NA	NA	NA	91855055	91865298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050
transcript_112962.known	chr6	+	3980	3	FSM	ENSMUSG00000034083.17	ENSMUST00000138868.8	3980	3	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91855033	91861968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91855168_91857237_91857343_91858227
transcript_112966.known	chr6	+	6095	21	FSM	ENSMUSG00000034037.15	ENSMUST00000089334.9	6095	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.67032930884901	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTACTTGTAGTATAAA	NA	False	NA	NA	False	AATAAA	-20	NA	91955858	92052985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_91956024_91963781_91966447_92001484_92001615_92015005_92015065_92015167_92015199_92026986_92027148_92027370_92027531_92028060_92028149_92030207_92030259_92030791_92030851_92038784_92038857_92039816_92039886_92042128_92042213_92043163_92043244_92044482_92044583_92044865_92045004_92045428_92045559_92046348_92046483_92048292_92048422_92051078_92051234_92051550
transcript_112967.known	chr6	-	6073	4	FSM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_2	13.9124245031395	311	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCTTTAA	NA	False	NA	NA	False	AATACA	-6	NA	92161014	92146505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_92152190_92152689_92152778_92155690_92155798_92160820
transcript_112970.known	chr6	-	5334	12	FSM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_10	18.3307536376882	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGTGTGCTTAAAACGT	NA	False	NA	1	True	ATTAAA	-24	NA	92191906	92163692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_92167440_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178615_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
transcript_112975.known	chr6	-	3383	1	FSM	ENSMUSG00000014550.15	ENSMUST00000204858.2	3383	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATGAAAACAGAAAAAAAG	6345	False	NA	NA	False	NA	NA	NA	92171109	92167726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_92167700_92171100
transcript_112976.known	chr6	-	1384	3	FSM	ENSMUSG00000005892.5	ENSMUST00000006046.5	1384	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	3.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGCTTTGCTCTTCTG	NA	False	NA	-13	True	AATAAA	-15	NA	92221631	92219041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_92220107_92220652_92220869_92221528
transcript_112977.known	chr6	-	3708	8	FSM	ENSMUSG00000030020.14	ENSMUST00000113445.2	3708	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	6.79135104228841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTTTGGTTGTCTTT	NA	False	NA	NA	False	AGTAAA	-36	NA	92458373	92352364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_92353802_92387737_92388614_92393716_92393904_92397123_92397328_92399311_92399450_92402560_92402675_92435455_92435640_92457805
transcript_112980.known	chr6	-	7860	8	FSM	ENSMUSG00000030020.14	ENSMUST00000113446.8	7860	8	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_7	6.08779307218929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTGTCATTCTTCTCAG	NA	False	NA	-18	True	AATAAA	-15	NA	92511842	92347890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_92353802_92387737_92388614_92393716_92393904_92397123_92397328_92399311_92399450_92402560_92402675_92435455_92435640_92511596
transcript_112985.known	chr6	+	995	3	FSM	ENSMUSG00000097462.8	ENSMUST00000181840.4	995	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATGCCATATTTATCT	NA	False	NA	NA	False	NA	NA	NA	92917562	93088730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_92917791_93084047_93084141_93088056
transcript_112988.known	chr6	-	4598	23	FSM	ENSMUSG00000045095.17	ENSMUST00000093769.8	4598	23	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_22	12.2754205798915	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTTTTTTTGAAAATTAT	2665	False	NA	-1	True	ATTAAA	-19	NA	93890671	93655016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671193_93674174_93674469_93676596_93676790_93678270_93678363_93681257_93681342_93684984_93685199_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425_93762628_93769327_93769535_93792686_93792807_93890304
transcript_113.known	SIRV3	-	161	1	FSM	SIRV3D	SIRV311	161	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATAAAGATTTCGACTT	NA	False	NA	NA	False	NA	NA	NA	4762	4601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_-_4600_4800
transcript_1130.known	chr1	-	2861	8	FSM	ENSMUSG00000060771.16	ENSMUST00000155852.7	2861	8	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	6.49960752347276	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAACCACAAAGC	NA	False	NA	NA	False	AATACA	-15	NA	37904154	37872515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_37874417_37874502_37874674_37879579_37879739_37880265_37880434_37881535_37881602_37888311_37888528_37894325_37894455_37904103
transcript_113011.known	chr6	+	1922	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCCTCTCAGAAGCAG	NA	False	NA	NA	False	AATAAA	-36	NA	94477311	94581653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
transcript_113016.nic	chr6	+	1895	9	NIC	ENSMUSG00000045100.12	novel	1922	10	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	12.2983738762488	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCCTCTCAGAAGCAG	NA	False	NA	NA	False	AATAAA	-36	NA	94477293	94581653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94569392_94569463_94575360_94575426_94576159_94576234_94580532
transcript_113019.nnic	chr6	-	2543	14	NNC	ENSMUSG00000030029.15	novel	4849	20	NA	NA	-88	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.6582107932293	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTGTGCGGCGGTCA	6651	False	NA	NA	False	AATAAA	-17	NA	94677227	94581513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_94581761_94588412_94588674_94590544_94590709_94593369_94593442_94594226_94594299_94597233_94597315_94599595_94599740_94601910_94602055_94603349_94603494_94604940_94605085_94607082_94607221_94631827_94631903_94640907_94640980_94676442
transcript_113021.nnic	chr6	-	1136	4	NNC	ENSMUSG00000030029.15	novel	4849	20	NA	NA	-88	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	50.6907837338855	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTGTGCGGCGGTCAC	6651	False	NA	NA	False	AATAAA	-18	NA	94677227	94581512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_94581761_94631871_94631903_94640907_94640980_94676442
transcript_113022.known	chr6	-	4951	19	FSM	ENSMUSG00000030029.15	ENSMUST00000101126.3	4951	19	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_14	16.0804305574689	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTAAGTGTGTGCGGCGG	6760	False	NA	NA	False	AATAAA	-14	NA	94677118	94581516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_94582985_94583083_94583345_94584272_94584420_94585020_94585147_94585689_94586110_94586597_94586880_94588352_94588674_94590544_94590709_94593369_94593442_94594226_94594299_94597233_94597315_94599595_94599740_94601910_94602055_94603349_94603494_94604940_94605085_94607082_94607221_94631827_94631903_94640907_94640980_94676442
transcript_113023.known	chr6	+	4869	4	FSM	ENSMUSG00000030031.15	ENSMUST00000032107.10	4869	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	4.18993502999218	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACTAGTTAGTATTAACA	NA	False	NA	90	True	ATTAAA	-23	NA	95094720	95106771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_95094956_95095503_95095715_95098719_95099829_95103457
transcript_113032.known	chr6	-	3367	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_5	91.8564096838103	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCAGTAGTGTGGGGTG	NA	False	NA	-7	True	ATTAAA	-17	NA	95695781	95449989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
transcript_113039.known	chr6	-	961	2	FSM	ENSMUSG00000061838.8	ENSMUST00000203109.2	961	2	0	0	0	0	multi-exon	FALSE	canonical	3	767	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTGATGGTGGAGAATCA	NA	False	NA	NA	False	NA	NA	NA	95695781	95631731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_95632581_95695669
transcript_113041.known	chr6	-	2190	6	FSM	ENSMUSG00000046500.9	ENSMUST00000089295.6	2190	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.56124969497314	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGTGATTATTTATTT	NA	False	NA	-28	True	AGTAAA	-26	NA	97037374	96808163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_96809534_96820711_96820837_96840720_96840877_96991332_96991449_96996875_96997016_97037091
transcript_113044.known	chr6	-	4424	18	FSM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_9	6.4238957016875	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTGAACATCTTCAGGAT	NA	False	NA	-6	True	AATAAA	-22	NA	97126143	97086984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97125220_97125792
transcript_113048.known	chr6	-	5732	17	FSM	ENSMUSG00000030059.16	ENSMUST00000095664.6	5732	17	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	13.1808336231059	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCAGTAAGTGGCAGAAG	7468	False	NA	NA	False	AATAAA	-13	NA	97156083	97129957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_97132459_97133804_97133931_97135006_97135160_97135421_97135524_97137203_97137297_97137491_97137562_97138328_97138522_97140479_97140637_97141009_97141103_97144209_97144367_97145048_97145216_97145708_97145852_97147286_97147393_97149173_97149301_97150260_97150365_97152730_97153930_97155842
transcript_113052.nic	chr6	-	2700	11	ISM	ENSMUSG00000030059.16	ENSMUST00000095664.6	5732	17	-42	8400	-42	-1145	5prime_fragment	FALSE	canonical	3	75	junction_2	14.4986206240456	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAGAAAACTAGAGGATGA	7426	False	NA	NA	False	AATAAA	-1	NA	97156125	97138357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_97138522_97140479_97140637_97141009_97141103_97144209_97144367_97145048_97145216_97145708_97145852_97147286_97147393_97149173_97149301_97150260_97150365_97152730_97153930_97155842
transcript_113057.known	chr6	-	2561	18	FSM	ENSMUSG00000030061.17	ENSMUST00000204056.2	2561	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_16	168.014169776465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTATAGTCAAGTCTC	NA	False	NA	-18	True	AGTAAA	-17	NA	97182520	97160778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182063_97182309_97182493
transcript_113058.known	chr6	-	2257	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAAAGTATATCAAT	NA	False	NA	-7	True	AATAAA	-24	NA	97182608	97160967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
transcript_11306.known	chr10	+	1410	5	FSM	ENSMUSG00000003072.16	ENSMUST00000105367.8	1410	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	1062.04060656832	1234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	3587	False	NA	15	True	ATTAAA	-14	NA	79977290	79981647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79977501_79977874_79978441_79979665_79979820_79981052_79981142_79981256
transcript_113062.known	chr6	-	2465	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATTGCAATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	97182521	97160630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
transcript_113069.known	chr6	-	1293	2	FSM	ENSMUSG00000030061.17	ENSMUST00000203215.2	1293	2	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATACTGGGATCC	NA	False	NA	NA	False	TTTAAA	-3	NA	97182529	97181051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_97182309_97182493
transcript_113071.known	chr6	+	1442	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	50	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGTCTATATGGCACAT	8448	False	NA	10	True	AATAAA	-21	NA	97187649	97210276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_97187958_97206497_97206716_97209360
transcript_113074.known	chr6	-	4913	24	FSM	ENSMUSG00000030064.17	ENSMUST00000113355.9	4913	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_20	23.7882911898179	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	NA	False	NA	-1	True	AATAAA	-19	NA	97594502	97263827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97389448_97389542_97398522_97398618_97400419_97400486_97505690_97505813_97594150
transcript_113077.nic	chr6	-	4503	20	NIC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_19	20.0048470580801	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	7407	False	NA	-1	True	AATAAA	-19	NA	97373704	97263827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97373386
transcript_113078.nnic	chr6	-	4382	20	NNC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	-139	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_19	20.6139828293477	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	7275	False	NA	-1	True	AATAAA	-19	NA	97373836	97263827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97373639
transcript_11308.known	chr10	+	931	4	FSM	ENSMUSG00000003072.16	ENSMUST00000003156.15	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	2420	junction_3	40.5983031938802	4797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTTTCTAACTGCAC	4445	False	NA	20	True	ATTAAA	-19	NA	79978148	79981652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79978441_79979665_79979820_79981052_79981142_79981256
transcript_113085.nnic	chr6	-	3883	13	NNC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	1299	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_12	14.4366431924692	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	NA	False	NA	-1	True	AATAAA	-19	NA	97288042	97263827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97287884
transcript_113087.nnic	chr6	-	3847	13	NNC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_12	12.9871731591854	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	NA	False	NA	-1	True	AATAAA	-19	NA	97289409	97263827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97289287
transcript_11309.known	chr10	+	781	3	FSM	ENSMUSG00000003072.16	ENSMUST00000105366.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1205	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGTGTTCTGTTTCTAA	4500	False	NA	14	True	ATTAAA	-13	NA	79978203	79981646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79978441_79979665_79979820_79981256
transcript_113096.known	chr6	-	3996	13	FSM	ENSMUSG00000030064.17	ENSMUST00000143698.8	3996	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	16.9377946878833	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGTCATTTGTATC	NA	False	NA	NA	False	CATAAA	-16	NA	97289341	97264042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97288855
transcript_113098.known	chr6	+	4881	10	FSM	ENSMUSG00000035158.16	ENSMUST00000043637.14	4881	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	22.5738841787048	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTTGACCAGTTGTG	NA	False	NA	5	True	ATTAAA	-16	NA	97784018	97998310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_97784249_97918013_97918264_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983083_97983159_97987355_97987432_97990629_97990778_97994734
transcript_113099.known	chr6	+	2113	10	FSM	ENSMUSG00000035158.16	ENSMUST00000203884.3	2113	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	21.9516865686871	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATGATGATTATGATAGA	NA	False	NA	NA	False	NA	NA	NA	97784012	97995554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_97784249_97918013_97918264_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983101_97983159_97987355_97987432_97990629_97990778_97994734
transcript_11310.known	chr10	+	3727	9	FSM	ENSMUSG00000035621.14	ENSMUST00000042057.12	3727	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	4.11551940828858	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTGCCCCTGGCTGTTC	NA	False	NA	25	True	AATAAA	-17	NA	79984105	79994202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79984184_79985515_79986148_79987211_79987300_79987494_79987558_79989424_79989554_79989649_79989968_79990164_79990307_79990967_79991241_79992198
transcript_113106.known	chr6	+	1360	2	FSM	ENSMUSG00000035158.16	ENSMUST00000148233.2	1360	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAAATCCTTCCAT	NA	False	NA	NA	False	NA	NA	NA	97784018	97919140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_97784249_97918010
transcript_113107.known	chr6	+	2388	1	FSM	ENSMUSG00000072875.3	ENSMUST00000101122.3	2388	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTGTTTTGTTTTTGAG	3767	False	NA	10	True	AATATA	-20	NA	99669639	99672027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_99669600_99672000
transcript_113108.known	chr6	-	1450	3	FSM	ENSMUSG00000030069.16	ENSMUST00000101120.11	1450	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCTGTCAACAGTTTTTAT	8817	False	NA	NA	False	NA	NA	NA	99703353	99688259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_99689419_99699469_99699596_99703188
transcript_113111.known	chr6	-	4503	5	FSM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_4	17.7552809045647	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAGATGATTATTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	100264446	100205525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_100209387_100209827_100209927_100210023_100210201_100263443_100263570_100264206
transcript_113117.nic	chr6	-	545	3	ISM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	-33	4529	-33	0	5prime_fragment	FALSE	canonical	3	260	junction_2	23.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCACCAAGAAAAACACCAAC	NA	False	NA	NA	False	AAGAAA	-34	NA	100264479	100210054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_100210201_100263443_100263570_100264206
transcript_113119.known	chr6	-	1990	11	FSM	ENSMUSG00000035378.18	ENSMUST00000170667.8	1990	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1530201939083	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	False	NA	-2	True	AATAAA	-18	NA	100648118	100550042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_113120.nnic	chr6	-	2008	11	NNC	ENSMUSG00000035378.18	novel	1990	11	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	80.3295711428861	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAGGTGTAAATAATTAG	NA	False	NA	-3	True	AATAAA	-17	NA	100648164	100550043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613955_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_113123.nnic	chr6	-	1625	11	NNC	ENSMUSG00000035378.18	novel	6816	11	NA	NA	-46	-29234	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	83.0821280420765	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAGAGCAACTTGACTTG	NA	False	NA	NA	False	AATAAA	-9	NA	100648164	100579277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_100579574_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_113127.known	chr6	-	1638	8	FSM	ENSMUSG00000035378.18	ENSMUST00000089245.7	1638	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_2	71.8828411871905	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAGGTGTAAATAATTAG	NA	False	NA	-3	True	AATAAA	-17	NA	100648100	100550043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_100550750_100588696_100588818_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_11313.known	chr10	+	3597	8	FSM	ENSMUSG00000035621.14	ENSMUST00000099492.10	3597	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	4.49943307086389	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTGCCCCTGGCTGTT	NA	False	NA	24	True	AATAAA	-16	NA	79984105	79994201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_79984184_79985515_79986148_79987211_79987300_79987494_79987558_79989649_79989968_79990164_79990307_79990967_79991241_79992198
transcript_113130.known	chr6	+	4874	9	FSM	ENSMUSG00000052144.9	ENSMUST00000063854.7	4874	9	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_7	39.1144155011934	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACGTGTGGAATTACTTT	9660	False	NA	12	True	AATAAA	-21	NA	100810582	100846895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_100810879_100811677_100811760_100829445_100829617_100838370_100838465_100840083_100840122_100841639_100841715_100842034_100842179_100842748_100843045_100843217
transcript_113134.known	chr6	-	4104	10	FSM	ENSMUSG00000035357.18	ENSMUST00000075994.11	4104	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	4.85340659285368	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGACATGGGTGTTTATTT	NA	False	NA	-4	True	AATAAA	-24	NA	101354858	101126569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_101129030_101130179_101130297_101131154_101131257_101132830_101132894_101133874_101133974_101146094_101146183_101149160_101149409_101331354_101331463_101339099_101339187_101354126
transcript_113137.nnic	chr6	-	3348	8	NNC	ENSMUSG00000035357.18	novel	4104	10	NA	NA	61924	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	8.39095723176481	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGACATGGGTGTTTATTT	NA	False	NA	-4	True	AATAAA	-24	NA	101270047	101126569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_101129030_101130179_101130297_101131154_101131257_101132830_101132894_101133874_101133974_101146094_101146183_101149160_101149409_101269876
transcript_113141.known	chr6	-	2084	11	FSM	ENSMUSG00000005362.15	ENSMUST00000113239.10	2084	11	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_5	22.0871003076456	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777035	106757161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
transcript_113149.known	chr6	+	1398	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAAACTAAATGAAGAGT	NA	False	NA	NA	False	NA	NA	NA	106746126	106758615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
transcript_113151.known	chr6	+	1614	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113249.8	1614	9	0	0	0	0	multi-exon	FALSE	canonical	1	13	junction_1	300.377991037959	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAATAGTAATCCC	NA	False	NA	NA	False	GATAAA	-38	NA	106746101	106758832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_106746153_106746816_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
transcript_113153.known	chr6	+	2283	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746126	106759435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
transcript_113161.known	chr6	+	1934	6	FSM	ENSMUSG00000013736.17	ENSMUST00000113247.8	1934	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	401.16261042126	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTTGAGTCTATGCAGT	NA	False	NA	NA	False	AATAAA	-12	NA	106746080	106754642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106753414
transcript_113164.known	chr6	-	2784	5	FSM	ENSMUSG00000005362.15	ENSMUST00000147087.2	2784	5	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_4	25.0099980007996	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGTACCCAGTGACTTG	NA	False	NA	NA	False	AATAAA	-27	NA	106777022	106765708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
transcript_113167.known	chr6	-	2898	1	FSM	ENSMUSG00000005362.15	ENSMUST00000204230.2	2898	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106777038	106774140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_106774100_106777000
transcript_113171.known	chr6	+	1612	2	FSM	ENSMUSG00000034639.8	ENSMUST00000049246.7	1612	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTCCCGATCTTATTA	NA	False	NA	6	True	AATAAA	-16	NA	108042005	108054083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_108042201_108052666
transcript_113173.known	chr6	-	2593	9	FSM	ENSMUSG00000030101.16	ENSMUST00000032191.16	2593	9	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	15.6204993518133	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGACTTCACTTTTTCAT	2472	False	NA	NA	False	AATAAA	-15	NA	108162543	108083988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_108085548_108095580_108095641_108121551_108121666_108129187_108129303_108130073_108130197_108131919_108132003_108150316_108150392_108152948_108153123_108162253
transcript_113175.nnic	chr6	-	1785	8	NNC	ENSMUSG00000030101.16	novel	452	2	NA	NA	0	1936	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	32.630898090676	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGGTCTTTGCTGATC	2472	False	NA	NA	False	AATAAA	-31	NA	108162543	108119337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_108120149_108121551_108121666_108129187_108129303_108130073_108130197_108131919_108132003_108150316_108150392_108152948_108153123_108162253
transcript_113178.known	chr6	-	390	1	FSM	ENSMUSG00000091845.2	ENSMUST00000025040.6	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	351	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTATTTTTTCTTT	NA	False	NA	-7	True	AATAAA	-27	NA	108117470	108117080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_108117100_108117500
transcript_113180.known	chr6	+	9870	62	FSM	ENSMUSG00000030102.12	ENSMUST00000032192.9	9870	62	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_26	20.5921869111677	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGTGACTGGCTGGTGG	NA	False	NA	4	True	AATAAA	-15	NA	108190056	108528070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224_108218296_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108342259_108342305_108345971_108346127_108353722_108353823_108354645_108354807_108355122_108355265_108357876_108358036_108358148_108358322_108359065_108359186_108360581_108360777_108363580_108363833_108364324_108364467_108365145_108365300_108366327_108366516_108368791_108368931_108369491_108369547_108370865_108371032_108371195_108371367_108371795_108371862_108372936_108373075_108376210_108376337_108378273_108378475_108380232_108380485_108382360_108382487_108383050_108383180_108387769_108387891_108390729_108390915_108393770_108393920_108394849_108394962_108400293_108400327_108408421_108408458_108409606_108409658_108415260_108415394_108417457_108417649_108447983_108448165_108450367_108450622_108458183_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
transcript_113185.nic	chr6	+	877	4	ISM	ENSMUSG00000030102.12	ENSMUST00000032192.9	9870	62	-2	309413	-2	-136107	5prime_fragment	FALSE	canonical	3	46	junction_3	9.67241208569794	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATTTAAGGGTCCAGTCA	NA	False	NA	NA	False	NA	NA	NA	108190054	108218657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224
transcript_113195.known	chr6	+	3113	5	FSM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_3	24.2899156029822	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATGCTGGATTTGTTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	108637589	108643886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
transcript_113197.known	chr6	+	4443	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	0	0	0	0	multi-exon	TRUE	canonical	3	458	junction_6	33.5480583972042	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGCCTCCTGTGTGTCA	NA	False	NA	NA	False	AATAAA	-18	NA	108760059	108802239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
transcript_113206.known	chr6	+	5817	12	FSM	ENSMUSG00000030104.10	ENSMUST00000089162.5	5817	12	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_5	22.3007245184901	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTCACTGTGTTTCTCC	NA	False	NA	10	True	ATTAAA	-15	NA	108805634	108836309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_108806195_108813700_108813774_108818560_108818665_108819887_108820060_108821787_108821972_108823632_108823808_108825670_108825792_108826355_108826527_108828170_108828245_108829450_108829548_108831205_108831410_108832427
transcript_113207.known	chr6	+	6077	12	FSM	ENSMUSG00000030104.10	ENSMUST00000204804.3	6077	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	94.2706671117053	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTTTCTCCTTTGCATG	NA	False	NA	18	True	ATTAAA	-23	NA	108805601	108836317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_108806195_108813700_108813774_108818560_108818665_108819887_108820060_108821787_108821972_108823632_108823808_108825670_108825792_108826355_108826527_108828170_108828464_108829450_108829548_108831205_108831410_108832427
transcript_113218.known	chr6	+	1730	6	FSM	ENSMUSG00000057604.10	ENSMUST00000032376.6	1730	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.67332005306815	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACTTTTATCTCGTTAT	NA	False	NA	NA	False	AATAAA	-25	NA	112250718	112307386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_112250934_112282009_112282099_112287446_112287703_112292536_112292873_112305623_112305840_112306768
transcript_113219.known	chr6	-	2577	14	FSM	ENSMUSG00000030254.17	ENSMUST00000068487.12	2577	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	88.4665550417034	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCAATGTGTAATGTC	NA	False	NA	-109	True	CATAAA	-16	NA	112673631	112596935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_11322.known	chr10	+	834	8	FSM	ENSMUSG00000045193.14	ENSMUST00000054666.7	834	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	141.847863313236	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6191	False	NA	NA	False	AATAAA	-17	NA	80003673	80008620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80008247_80008347_80008470
transcript_113224.nic	chr6	-	2625	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	-4	-19	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	58.64790182853	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTATTTCCCAGTTTT	NA	False	NA	-3	True	CATAAA	-21	NA	112673651	112596829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_113226.nic	chr6	-	2519	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	58.64790182853	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCAATGTGTAATGTC	NA	False	NA	-109	True	CATAAA	-16	NA	112673651	112596935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_113227.nic	chr6	-	1905	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	-4	242	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	58.64790182853	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGAAATGTTCTGAAATGA	NA	False	NA	NA	False	NA	NA	NA	112673651	112597549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_11323.known	chr10	+	1321	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	33.736314097555	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6129	False	NA	NA	False	ATTAAA	-18	NA	80003611	80007489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
transcript_113237.known	chr6	-	2577	12	FSM	ENSMUSG00000030254.17	ENSMUST00000077088.11	2577	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	49.718048005937	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGCCTTTGTTTGGCAA	NA	False	NA	16	True	CATAAA	-40	NA	112673647	112596810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_112597866_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_11324.nic	chr10	+	2484	7	NIC	ENSMUSG00000045193.14	novel	834	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	60	junction_6	113.828330783197	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6190	False	NA	NA	False	AATAAA	-17	NA	80003672	80008620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80008347_80008470
transcript_113244.nic	chr6	-	3636	12	NIC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_1	27.9506649191301	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	-4	True	AATAAA	-20	NA	112673651	112603375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_113247.nic	chr6	-	2611	12	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	-4	-1025	combination_of_known_junctions	FALSE	canonical	3	172	junction_1	27.9506649191301	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGCCATAGCCATTTCA	NA	False	NA	NA	False	NA	NA	NA	112673651	112604400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_113251.known	chr6	-	2004	9	FSM	ENSMUSG00000030254.17	ENSMUST00000135092.2	2004	9	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_5	18.7112098753662	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAGACAAAAA	NA	False	NA	NA	False	NA	NA	NA	112673605	112641311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_113258.known	chr6	-	8887	22	FSM	ENSMUSG00000030257.17	ENSMUST00000088373.11	8887	22	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_1	6.19450418404635	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTCTGTGGTTGTTTAC	6453	False	NA	-3	True	AATAAA	-22	NA	112924227	112694931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_112700163_112704173_112704502_112706609_112706760_112708289_112708471_112712794_112712875_112715843_112716072_112716279_112716386_112718321_112718457_112723852_112723931_112726322_112726384_112731531_112731635_112736709_112736738_112743828_112743914_112748327_112748526_112750558_112750661_112752459_112752682_112753980_112754110_112757833_112758020_112772733_112772797_112793551_112793715_112806399_112806593_112923390
transcript_11326.known	chr10	+	912	6	FSM	ENSMUSG00000045193.14	ENSMUST00000140774.2	912	6	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_5	19.6936538001459	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGCCTCGTGACTAGAC	6237	False	NA	NA	False	NA	NA	NA	80003719	80006971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527
transcript_113264.nic	chr6	-	3416	20	ISM	ENSMUSG00000030257.17	ENSMUST00000088373.11	8887	22	-48	11638	-48	9416	5prime_fragment	FALSE	canonical	3	14	junction_14	5.12989176042577	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCATTTGCTTGTTTGT	6405	False	NA	NA	False	NA	NA	NA	112924275	112706569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_112706760_112708289_112708471_112712794_112712875_112715843_112716072_112716279_112716386_112718321_112718457_112723852_112723931_112726322_112726384_112731531_112731635_112736709_112736738_112743828_112743914_112748327_112748526_112750558_112750661_112752459_112752682_112753980_112754110_112757833_112758020_112772733_112772797_112793551_112793715_112806399_112806593_112923390
transcript_113266.known	chr6	+	643	2	FSM	ENSMUSG00000108103.2	ENSMUST00000204406.2	643	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGGTCAGCAGCCTAGG	NA	False	NA	NA	False	NA	NA	NA	112923997	112926291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_112924148_112925798
transcript_113272.known	chr6	+	2163	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	0	0	0	0	multi-exon	TRUE	canonical	3	600	junction_1	54.2445309298778	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023185	113045234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
transcript_113277.nic	chr6	+	2029	10	NIC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	8	-93	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	204.840377481867	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTTGTGTGACTATTAT	NA	False	NA	27	True	AATAAA	-23	NA	113023295	113045141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
transcript_113278.nic	chr6	+	2122	10	NIC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	204.840377481867	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023295	113045234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
transcript_113284.known	chr6	+	1764	5	FSM	ENSMUSG00000030264.15	ENSMUST00000137396.8	1764	5	0	0	0	0	multi-exon	FALSE	canonical	3	600	junction_1	68.2953146269933	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAAAAGAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	113023275	113037758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915
transcript_113286.nic	chr6	+	724	4	NIC	ENSMUSG00000030264.15	novel	649	3	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_3	301.439877919296	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTGTTGTTTT	NA	False	NA	28	True	ATTAAA	-22	NA	113023276	113027998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113023352_113024375_113024666_113026299_113026378_113027717
transcript_113290.known	chr6	+	558	3	FSM	ENSMUSG00000030264.15	ENSMUST00000145054.8	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	600	junction_1	91.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGCATGTGATTACAGTA	NA	False	NA	NA	False	AATATA	-8	NA	113023287	113026503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113023352_113024375_113024666_113026299
transcript_113292.known	chr6	-	1181	2	FSM	ENSMUSG00000086429.10	ENSMUST00000124246.4	1181	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGAATGACTTTTTAAT	NA	False	NA	0	True	NA	NA	NA	113054171	113047358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113048397_113054028
transcript_113293.known	chr6	-	822	2	FSM	ENSMUSG00000086429.10	ENSMUST00000159544.3	822	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGCAGACTTGTTCGTG	NA	False	NA	NA	False	NA	NA	NA	113054294	113047734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113048397_113054134
transcript_113294.known	chr6	+	649	3	FSM	ENSMUSG00000030264.15	ENSMUST00000134657.3	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	355.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTGTTGTTTT	NA	False	NA	28	True	ATTAAA	-22	NA	113024375	113027998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113024666_113026299_113026378_113027717
transcript_1133.known	chr1	-	1231	7	FSM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_5	18.2543754267908	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929492	37917968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
transcript_113302.known	chr6	+	6755	22	FSM	ENSMUSG00000034269.13	ENSMUST00000042889.12	6755	22	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	22.3513482018403	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAACAATGTGTTTGTTC	7843	False	NA	23	True	NA	NA	NA	113054325	113130396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113054674_113081895_113082083_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
transcript_11331.known	chr10	+	376	2	FSM	ENSMUSG00000045193.14	ENSMUST00000139935.2	376	2	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTCAGCCAATTTACCT	6214	False	NA	NA	False	NA	NA	NA	80003696	80005963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80003751_80005641
transcript_113312.nnic	chr6	+	2223	14	NIC	ENSMUSG00000034269.13	novel	3334	18	NA	NA	-76	350	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	22.1129430090323	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAGAAGAAGAAGAAAAAGA	7963	False	NA	NA	False	NA	NA	NA	113054445	113095242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113054674_113081895_113082083_113082877_113083103_113086384_113086578_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218
transcript_11332.known	chr10	+	678	3	FSM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	13	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGTGTCCTGGTGAAGT	NA	False	NA	43	True	AATGAA	-45	NA	80008777	80010980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80009009_80010042_80010160_80010650
transcript_113323.nic	chr6	+	2155	13	NIC	ENSMUSG00000034269.13	novel	3334	18	NA	NA	-5	350	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	17.8346962096047	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAGAAGAAGAAGAAAAAGA	7838	False	NA	NA	False	NA	NA	NA	113054320	113095242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113054674_113081895_113082083_113082877_113083103_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218
transcript_11333.known	chr10	+	2131	4	FSM	ENSMUSG00000003070.7	ENSMUST00000003154.7	2131	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	9.10433352249844	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGGGCCTCTCTGTTACA	NA	False	NA	16	True	AATAAA	-17	NA	80015315	80025844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80015725_80022585_80022900_80024275_80024342_80024502
transcript_113335.known	chr6	+	2180	3	FSM	ENSMUSG00000034269.13	ENSMUST00000143998.8	2180	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	21	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTGTGTGGTTTTT	7843	False	NA	NA	False	AATAAA	-16	NA	113054325	113084522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113054674_113081895_113082083_113082877
transcript_113344.known	chr6	+	2676	19	FSM	ENSMUSG00000030269.15	ENSMUST00000113146.9	2676	19	0	0	0	0	multi-exon	FALSE	canonical	3	298	junction_17	28.028204489649	1322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTCAGTCCCCATCAG	1968	False	NA	NA	False	NA	NA	NA	113214803	113258353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254750_113254907_113257563
transcript_113345.nic	chr6	+	2452	19	NIC	ENSMUSG00000030269.15	novel	2676	19	NA	NA	-11	2	combination_of_known_junctions	FALSE	canonical	3	24	junction_17	81.7724183026387	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTTCATTAGCATTTC	1957	False	NA	15	True	AATAAA	-16	NA	113214792	113258159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254791_113254907_113257563
transcript_113356.nic	chr6	+	2343	18	NIC	ENSMUSG00000030269.15	novel	2676	19	NA	NA	-19	0	combination_of_known_junctions	TRUE	canonical	3	55	junction_17	76.4492277859348	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCTTTTCATTAGCATT	1949	False	NA	13	True	AATAAA	-14	NA	113214784	113258157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113257563
transcript_113362.nnic	chr6	+	2344	18	NIC	ENSMUSG00000030269.15	novel	2676	19	NA	NA	-11	2	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	88.3270111554443	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTTCATTAGCATTTC	1957	False	NA	15	True	AATAAA	-16	NA	113214792	113258159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113215083_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254750_113254907_113257563
transcript_113391.nic	chr6	+	1834	17	ISM	ENSMUSG00000030270.12	ENSMUST00000130191.8	2115	21	1407	0	1352	0	3prime_fragment	FALSE	canonical	0	0	junction_1	6.71635131600484	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCTCTGTCTCATGGGT	NA	False	NA	1	True	AATAAA	-12	NA	113260677	113281785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_113260944_113261165_113261169_113261345_113261423_113266945_113267010_113267127_113267232_113267365_113267471_113268998_113269041_113269326_113269403_113269482_113269537_113269963_113270026_113270669_113270717_113271572_113271755_113271986_113272115_113277523_113277627_113278600_113278659_113279009_113279084_113281396
transcript_113396.known	chr6	+	4773	14	FSM	ENSMUSG00000001632.17	ENSMUST00000113122.8	4773	14	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_6	28.9253272447006	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCTTCTTGCCTTCTA	232	False	NA	25	True	AATAAA	-13	NA	113284097	113301818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
transcript_113398.known	chr6	+	4381	14	FSM	ENSMUSG00000001632.17	ENSMUST00000204626.3	4381	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	42.213040975537	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACTGTAATTATTGGAGA	408	False	NA	NA	False	NA	NA	NA	113284273	113301584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
transcript_113402.known	chr6	+	4826	13	FSM	ENSMUSG00000001632.17	ENSMUST00000113119.8	4826	13	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	46.1317557533733	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCTTGCCTTCTACTA	287	False	NA	28	True	AATAAA	-16	NA	113284152	113301821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113295998_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
transcript_113403.known	chr6	+	4468	13	FSM	ENSMUSG00000001632.17	ENSMUST00000203577.2	4468	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	43.4117079701881	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAAGAATGGAGCTT	524	False	NA	NA	False	NA	NA	NA	113284389	113301685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
transcript_113406.known	chr6	+	4540	13	FSM	ENSMUSG00000001632.17	ENSMUST00000113117.4	4540	13	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	40.0779622181013	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTCTATTTAGAATTCT	319	False	NA	9	True	AATATA	-16	NA	113284184	113301802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113284299_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
transcript_113414.known	chr6	-	606	3	FSM	ENSMUSG00000085012.2	ENSMUST00000156734.2	606	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGAGTGAGTGGCCAA	4068	False	NA	NA	False	ATTAAA	-14	NA	113303708	113285626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113285797_113297400_113297656_113303527
transcript_113415.known	chr6	-	1496	12	FSM	ENSMUSG00000030272.16	ENSMUST00000032409.15	1496	12	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	8.10570659096682	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCGTTTGCTCAAATAGC	5793	False	NA	NA	False	AATAAA	-20	NA	113320945	113311084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828_113318944_113320796
transcript_113416.known	chr6	-	1486	11	FSM	ENSMUSG00000030272.16	ENSMUST00000149497.4	1486	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	7.23602100605022	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACAAGACAGTTCCGT	5873	False	NA	NA	False	AATAAA	-7	NA	113320865	113311097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316543_113317252_113317385_113318828_113318944_113320796
transcript_113425.known	chr6	+	1601	7	FSM	ENSMUSG00000030271.15	ENSMUST00000136263.4	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	81.0445693567572	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGCAGTGAAGAGTGAG	2335	False	NA	10	True	AATAAA	-19	NA	113303959	113311145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113304324_113305325_113305574_113306106_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
transcript_113426.known	chr6	+	1549	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2308	False	NA	14	True	AATAAA	-23	NA	113303932	113311149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
transcript_113431.known	chr6	-	1208	2	FSM	ENSMUSG00000030272.16	ENSMUST00000156853.2	1208	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAAAGGACTAGCCATCA	5814	False	NA	NA	False	AAAAAG	-6	NA	113320924	113317863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113318944_113320796
transcript_113434.nic	chr6	-	2274	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-2	0	intron_retention	FALSE	canonical	3	134	junction_9	97.0713114476818	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354846	113343615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
transcript_113435.nnic	chr6	-	2085	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	13	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_9	124.029068675626	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354831	113343615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354450
transcript_113441.known	chr6	-	2848	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAGTATCTATCTATT	NA	False	NA	NA	False	TATAAA	-13	NA	113354844	113342985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
transcript_113453.known	chr6	-	1577	4	FSM	ENSMUSG00000048930.13	ENSMUST00000113107.8	1577	4	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_3	104.209191319939	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAAATTCTGGTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	113354700	113351346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113352221_113352800_113353026_113353852_113353907_113354276
transcript_113455.known	chr6	+	3168	13	FSM	ENSMUSG00000030276.20	ENSMUST00000032414.11	3168	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.58791070643882	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAAGTTCTCTGGGCTTGG	NA	False	NA	NA	False	ATTAAA	-16	NA	113369418	113391548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113369858_113370063_113370156_113371652_113371822_113371958_113372057_113374890_113375020_113375730_113375846_113376627_113376733_113378262_113378459_113382259_113382409_113384136_113384381_113385865_113386302_113389749_113390021_113390823
transcript_113473.known	chr6	+	794	6	FSM	ENSMUSG00000079426.14	ENSMUST00000204802.2	794	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	512.714969549359	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACCGGGACAGACTTTT	NA	False	NA	-15	True	NA	NA	NA	113355530	113365976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113355582_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
transcript_113474.known	chr6	+	1323	5	FSM	ENSMUSG00000079426.14	ENSMUST00000203578.3	1323	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	519.345922772096	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTGTGCTCTGTGTGGG	NA	False	NA	38	True	ATTAAA	-30	NA	113355107	113366613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113355170_113358923_113359036_113361042_113361139_113362450_113362622_113365731
transcript_113475.known	chr6	+	695	4	FSM	ENSMUSG00000079426.14	ENSMUST00000171058.8	695	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	553.404212327863	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTCTGGGCGGGCCTGG	NA	False	NA	112	True	NA	NA	NA	113355153	113366143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113355170_113361042_113361139_113362450_113362622_113365731
transcript_113476.known	chr6	+	2270	6	FSM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_1	248.294985853521	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAAGGGTGCTTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	113355075	113367409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
transcript_113479.known	chr6	-	1224	9	FSM	ENSMUSG00000051169.15	ENSMUST00000060634.14	1224	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	50.3374549912885	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGCAGATGTTTACC	NA	False	NA	-18	True	AATAAA	-32	NA	113396280	113392289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113392684_113393267_113393394_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
transcript_11348.known	chr10	+	2640	14	FSM	ENSMUSG00000020156.17	ENSMUST00000020365.15	2640	14	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	105.419758317817	1028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATAGTCATTGCACA	8218	False	NA	19	True	TATAAA	-17	NA	80062267	80079737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80062539_80064155_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
transcript_113490.known	chr6	+	1147	2	FSM	ENSMUSG00000051256.11	ENSMUST00000204254.2	1147	2	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	0	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTAAGACTGTCCTGTG	NA	False	NA	13	True	AATAAA	-17	NA	113419570	113425170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113419766_113424218
transcript_113491.known	chr6	+	2414	1	FSM	ENSMUSG00000051256.11	ENSMUST00000204287.2	2414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAAAAAAATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	113419555	113421969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113419600_113422000
transcript_113493.nic	chr6	+	2523	18	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	-149	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	8.17117899020487	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	5607	False	NA	6	True	AATAAA	-21	NA	113448238	113460101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113451513_113451559_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
transcript_113495.nic	chr6	+	2319	18	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_7	10.3632969597244	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	5784	False	NA	6	True	AATAAA	-21	NA	113448415	113460101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113451513_113451559_113453386_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
transcript_113499.nic	chr6	+	2290	17	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	39	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	10.8137643769411	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	5795	False	NA	6	True	AATAAA	-21	NA	113448426	113460101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
transcript_113502.known	chr6	+	2302	17	FSM	ENSMUSG00000030281.17	ENSMUST00000058300.14	2302	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	12.3880928213345	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	5756	False	NA	6	True	AATAAA	-21	NA	113448387	113460101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113453386_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
transcript_113506.known	chr6	+	1759	14	FSM	ENSMUSG00000030281.17	ENSMUST00000205208.3	1759	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	8.92241376846094	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	7123	False	NA	6	True	AATAAA	-21	NA	113449754	113460101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113449849_113451121_113451234_113451513_113451559_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
transcript_113507.nnic	chr6	+	2406	11	NNC	ENSMUSG00000030284.12	novel	2306	10	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	78.0449229610742	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGCTTCAGTCTTAAC	1464	False	NA	12	True	AATAAA	-18	NA	113460264	113470298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_113461038_113461455_113461539_113465031_113465143_113465439_113465532_113466394_113466572_113466655_113466752_113468613_113468698_113468854_113468951_113469084_113469220_113469435_113469544_113469647
transcript_113510.known	chr6	+	2306	10	FSM	ENSMUSG00000030284.12	ENSMUST00000032422.6	2306	10	0	0	0	0	multi-exon	TRUE	canonical	3	165	junction_1	17.0945085399441	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGCTTCAGTCTTAACA	1457	False	NA	13	True	AATAAA	-19	NA	113460257	113470299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113461038_113461455_113461539_113465031_113465143_113465439_113465532_113466394_113466572_113466655_113466752_113468613_113468698_113468854_113468951_113469084_113469220_113469647
transcript_11352.nic	chr10	+	2507	14	NIC	ENSMUSG00000020156.17	novel	2640	14	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	97	junction_1	122.224887305831	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATAGTCATTGCA	8451	False	NA	17	True	TATAAA	-15	NA	80062500	80079735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_80062641_80064155_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
transcript_113524.known	chr6	-	3424	4	FSM	ENSMUSG00000045009.10	ENSMUST00000204134.3	3424	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	2.62466929133727	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTCGCTCTGGTCAA	4285	False	NA	1	True	AATAAA	-18	NA	113478892	113470885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113473027_113473892_113474049_113474232_113475278_113478810
transcript_113525.nic	chr6	-	3571	4	NIC	ENSMUSG00000045009.10	novel	3424	4	NA	NA	-150	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	2.16024689946929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTCGCTCTGGTCAA	4135	False	NA	1	True	AATAAA	-18	NA	113479042	113470885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_113473027_113473892_113474046_113474232_113475278_113478810
transcript_113528.known	chr6	-	3741	4	FSM	ENSMUSG00000045009.10	ENSMUST00000204268.3	3741	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	4.10960933531265	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATGTGTATGAATGTT	4333	False	NA	NA	False	TTTAAA	-22	NA	113478844	113470599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113473027_113473892_113474049_113474232_113475357_113478810
transcript_113529.known	chr6	-	1903	3	FSM	ENSMUSG00000045009.10	ENSMUST00000205170.2	1903	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTTGTGTTGTTTCTT	4329	False	NA	NA	False	NA	NA	NA	113478848	113473228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113474049_113474232_113475278_113478810
transcript_113530.known	chr6	-	1956	3	FSM	ENSMUSG00000045009.10	ENSMUST00000205075.2	1956	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCAAAAGCACTTTTG	4323	False	NA	NA	False	NA	NA	NA	113478854	113473260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113474049_113474232_113475357_113478810
transcript_113534.known	chr6	-	1985	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTGCTTCTGTGGGTTCT	NA	False	NA	2	True	ATTAAA	-29	NA	113508613	113491834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
transcript_113537.known	chr6	-	1216	1	FSM	ENSMUSG00000030286.7	ENSMUST00000203526.2	1216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	113508579	113507363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113507400_113508600
transcript_113538.known	chr6	+	5512	44	FSM	ENSMUSG00000034023.17	ENSMUST00000036340.12	5512	44	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_19	37.6323336574577	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTGTTGGTTTTTT	NA	False	NA	11	True	ATTAAA	-16	NA	113508642	113573978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113563170_113563210_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
transcript_113543.known	chr6	+	4707	43	FSM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_38	50.0643576738687	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTTTTGCCTCAGCTAC	NA	False	NA	7	True	AATAAA	-8	NA	113508664	113573234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
transcript_113556.nic	chr6	+	3582	34	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	-47	17786	-25	3889	5prime_fragment	TRUE	canonical	3	237	junction_19	37.7531735358683	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTGATGAGCCTTGATC	NA	False	NA	NA	False	AAGAAA	-7	NA	113508617	113555448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321
transcript_113558.nic	chr6	+	2702	27	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	-47	27975	-25	5846	5prime_fragment	FALSE	canonical	3	237	junction_19	42.1449492295593	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAACAAGGGAAAGACGG	NA	False	NA	NA	False	NA	NA	NA	113508617	113545259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168
transcript_113564.known	chr6	+	680	6	FSM	ENSMUSG00000034023.17	ENSMUST00000143535.8	680	6	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_5	34.3371518912096	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCAGCATATGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	113508664	113514797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567
transcript_113565.known	chr6	+	2142	5	FSM	ENSMUSG00000034023.17	ENSMUST00000101051.5	2142	5	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_3	30.62984655528	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATATTCTTAGAGGATGT	NA	False	NA	NA	False	ATTAAA	-19	NA	113508664	113515680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884
transcript_113566.known	chr6	+	1095	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_2	10.5	606	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATGTTTATGATCTGTT	NA	False	NA	11	True	AATAAA	-21	NA	113581732	113593912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113581858_113592736_113592820_113593025
transcript_113568.known	chr6	+	2792	3	FSM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	12	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGTGTTGTGTTACCT	158	False	NA	19	True	AATAAA	-19	NA	113600919	113608594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113601340_113605052_113605176_113606345
transcript_113570.known	chr6	+	3196	13	FSM	ENSMUSG00000060477.15	ENSMUST00000059286.14	3196	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	6.70820393249937	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGGGTGAATTT	NA	False	NA	26	True	AATAAA	-31	NA	113615427	113671987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113615603_113624599_113624783_113642663_113642808_113647159_113647255_113649699_113649901_113649983_113650049_113652591_113652707_113653547_113653658_113655607_113655804_113659693_113659757_113663718_113663920_113667743_113668033_113670628
transcript_113572.nnic	chr6	+	2913	11	NNC	ENSMUSG00000060477.15	novel	1887	10	NA	NA	107	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7.41350119714026	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGCTGTCTTATAATTT	8332	False	NA	9	True	AATAAA	-14	NA	113646845	113671970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_113647082_113647159_113647255_113649699_113649901_113649983_113650049_113652591_113652707_113653547_113653658_113655607_113655804_113659693_113659757_113663718_113663920_113667743_113668033_113670628
transcript_113575.known	chr6	+	2645	8	FSM	ENSMUSG00000056952.14	ENSMUST00000204753.3	2645	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.95875845725744	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCAGTGAGCAACAGAAAA	1489	False	NA	NA	False	NA	NA	NA	113674524	113687910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_113674563_113674667_113675079_113679061_113679683_113680994_113681868_113684226_113684355_113686420_113686605_113687001_113687176_113687694
transcript_113577.known	chr6	-	1353	9	FSM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	0	0	0	0	multi-exon	FALSE	canonical	3	942	junction_8	78.4968152220203	797	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	-11	True	NA	-10	True	AATAAA	-23	NA	113717704	113705022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
transcript_113587.nic	chr6	-	4589	23	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	7.70799734953872	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACATAAAAAATAATAAT	NA	False	NA	NA	False	NA	NA	NA	113868512	113725254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
transcript_113588.nnic	chr6	-	4366	22	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_14	8.97337962810631	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACATAAAAAATAATAAT	NA	False	NA	NA	False	NA	NA	NA	113868331	113725254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
transcript_113591.known	chr6	-	5658	20	FSM	ENSMUSG00000030302.18	ENSMUST00000205052.3	5658	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	10.9139165017514	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGAGATGTATTCAGTG	NA	False	NA	NA	False	AATGAA	-14	NA	113868500	113724026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750233_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
transcript_113592.nic	chr6	-	2365	12	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	0	13858	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	6.72972928120791	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACCTTTTTTGGGACATG	NA	False	NA	NA	False	AATAAA	-13	NA	113868331	113766440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
transcript_113603.known	chr6	+	4302	16	FSM	ENSMUSG00000030310.11	ENSMUST00000032454.8	4302	16	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	10.8558228103119	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTACTTTCCAGTTG	9910	False	NA	12	True	AATAAA	-20	NA	114259595	114294493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_114259838_114278015_114278066_114278823_114279149_114279460_114279593_114279707_114279809_114280918_114281029_114281747_114281881_114284657_114284793_114284985_114285090_114285518_114285644_114287098_114287212_114287423_114287556_114288765_114288869_114290399_114290501_114291255_114291424_114292265
transcript_113605.known	chr6	+	2543	21	FSM	ENSMUSG00000030314.17	ENSMUST00000182902.8	2543	21	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	41.8782759912583	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620089	114836185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_114620112_114648062_114648214_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_113607.nic	chr6	+	2524	21	NIC	ENSMUSG00000030314.17	novel	2459	20	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	41.3278356558869	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTGGGGCTCAGGTCCT	NA	False	NA	3	True	NA	NA	NA	114620075	114836182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_114620112_114623897_114624019_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_113612.nic	chr6	+	2418	20	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	29.4466041008941	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTGGGGCTCAGGTCCT	NA	False	NA	3	True	NA	NA	NA	114620060	114836182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_113613.nic	chr6	+	3162	20	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	3	-647	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	29.4466041008941	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCCTGCCAAACCTTTT	NA	False	NA	NA	False	NA	NA	NA	114620060	114836926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_113616.known	chr6	+	2459	20	FSM	ENSMUSG00000030314.17	ENSMUST00000182793.8	2459	20	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	42.1345950463867	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTGGGGCTCAGGTCCT	NA	False	NA	3	True	NA	NA	NA	114620087	114836182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_114620112_114623897_114624019_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_113619.known	chr6	+	3761	19	FSM	ENSMUSG00000030314.17	ENSMUST00000032457.17	3761	19	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	29.6327313191359	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTCTTTTTTTCCTACAG	NA	False	NA	NA	False	TATAAA	-15	NA	114620057	114837575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_114620112_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_113623.known	chr6	+	2264	18	FSM	ENSMUSG00000030314.17	ENSMUST00000182428.8	2264	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	43.4006840633028	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGGTCCTTCCATGTGC	NA	False	NA	12	True	NA	NA	NA	114620089	114836191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_114620112_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114753917_114754041_114835951
transcript_113625.known	chr6	-	1023	6	FSM	ENSMUSG00000030315.16	ENSMUST00000147639.8	1023	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.489897948556636	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGCCAAAGCACTAGG	NA	False	NA	NA	False	NA	NA	NA	114946141	114839281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_114839398_114839716_114839841_114840844_114841041_114867577_114867768_114934896_114934973_114945820
transcript_113626.nic	chr6	-	1244	6	NIC	ENSMUSG00000030315.16	novel	1023	6	NA	NA	-12	118	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	0.489897948556636	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGGGGGAGGGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	114946967	114839033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_114839398_114839716_114839841_114840844_114841041_114867577_114867768_114934896_114934973_114946673
transcript_113628.known	chr6	-	2198	4	FSM	ENSMUSG00000030315.16	ENSMUST00000152710.8	2198	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAATTGTTCAGAA	7865	False	NA	NA	False	NA	NA	NA	114852068	114837588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_114839398_114839716_114839841_114840844_114841041_114851999
transcript_113629.known	chr6	-	1763	1	FSM	ENSMUSG00000030315.16	ENSMUST00000204693.2	1763	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	114898777	114897014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_114897000_114898800
transcript_11363.known	chr10	+	3392	13	FSM	ENSMUSG00000020156.17	ENSMUST00000125784.8	3392	13	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	107.02790394202	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGTCATAGTCATTGC	8439	False	NA	16	True	TATAAA	-14	NA	80062488	80079734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80062539_80064155_80064273_80064828_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
transcript_113630.nic	chr6	-	1284	9	NIC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	189.765480264457	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCTTGTCACTCTG	NA	False	NA	-41	True	AATAAA	-18	NA	115014865	114981348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011116_115011212_115011911_115012095_115014610
transcript_113633.known	chr6	-	1168	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115014837	114981341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
transcript_113636.nnic	chr6	-	820	7	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	-2296	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_6	166.976462080405	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCTTGTCACTCTG	NA	False	NA	-41	True	AATAAA	-18	NA	115011522	114981348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011453
transcript_113642.nnic	chr6	-	1022	4	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	-28	1705	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	209.587425407368	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGATGATGATATGTGA	NA	False	NA	NA	False	NA	NA	NA	115014865	115006533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_115007025_115009180_115009274_115011911_115012095_115014610
transcript_113647.known	chr6	+	2708	13	FSM	ENSMUSG00000009394.14	ENSMUST00000009538.12	2708	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.49861072509416	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAGGTTCCCCCATCT	NA	False	NA	NA	False	AATAAA	-30	NA	115111877	115258967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_115112422_115212974_115213033_115214215_115214308_115216319_115216477_115221106_115221197_115231123_115231187_115231550_115231694_115238615_115238691_115239482_115239586_115240792_115240943_115251156_115251218_115255061_115255315_115258048
transcript_113651.known	chr6	+	2106	12	FSM	ENSMUSG00000042389.14	ENSMUST00000040234.9	2106	12	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	38.6343314973604	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCTCCGACCGGCCTCCA	NA	False	NA	NA	False	AATGAA	-30	NA	115521624	115555589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
transcript_113654.nic	chr6	+	1734	11	NIC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	-2	-292	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	74.5318723768563	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTTTGAGAGAATAAATG	NA	False	NA	14	True	AATAAA	-14	NA	115521622	115555297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_115521690_115524782_115524992_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
transcript_113656.known	chr6	+	638	4	FSM	ENSMUSG00000042389.14	ENSMUST00000130425.8	638	4	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	54.9201440477192	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGTCTCCCAGCCTTGCT	NA	False	NA	NA	False	TATAAA	-23	NA	115521624	115531233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951
transcript_113670.known	chr6	-	2946	17	FSM	ENSMUSG00000000441.18	ENSMUST00000112949.8	2946	17	0	0	0	0	multi-exon	FALSE	canonical	1	24	junction_16	182.118597605379	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGTGCAGTTTCTTGT	8815	False	NA	0	True	AATAAA	-43	NA	115652925	115595529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115652649
transcript_113671.known	chr6	-	3070	17	FSM	ENSMUSG00000000441.18	ENSMUST00000000451.14	3070	17	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_8	72.4119076878934	2532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGTGCAGTTTCTTGT	8144	False	NA	0	True	AATAAA	-43	NA	115653596	115595529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
transcript_1137.known	chr1	-	989	3	FSM	ENSMUSG00000026088.16	ENSMUST00000138806.2	989	3	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	23	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTTGGTAACGATGGGA	NA	False	NA	NA	False	NA	NA	NA	37929357	37921009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_37921780_37924295_37924398_37929240
transcript_113713.known	chr6	+	6230	8	FSM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	0	0	0	0	multi-exon	FALSE	canonical	2	438	junction_3	36.5396066911353	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACCTACACAAAGATCCA	NA	False	NA	NA	False	NA	NA	NA	115578862	115599585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
transcript_113718.known	chr6	-	2277	7	FSM	ENSMUSG00000000441.18	ENSMUST00000127503.2	2277	7	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_3	87.1080108575299	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATCAAATAAAAAAGACT	8144	False	NA	NA	False	AAAAAG	-5	NA	115653596	115607158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
transcript_113726.nnic	chr6	-	1516	13	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-1000	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_9	21.6260837878706	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737232	115706091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115736555_115736685_115737065
transcript_113727.known	chr6	-	1272	12	FSM	ENSMUSG00000059900.15	ENSMUST00000072933.13	1272	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	22.1650458199018	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115735960	115706101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115735898
transcript_113728.nnic	chr6	-	1374	12	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-987	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_9	21.3297603757274	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737219	115706091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115737065
transcript_113729.nnic	chr6	-	1464	12	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-1080	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	21.523003262126	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737312	115706091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115719270_115719349_115736555_115736685_115737065
transcript_113735.known	chr6	-	843	11	FSM	ENSMUSG00000059900.15	ENSMUST00000170625.8	843	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_8	22.4686448189471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACCAGAAGGCCACACAAT	NA	False	NA	NA	False	NA	NA	NA	115739371	115706531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115718501_115718634_115719270_115719349_115739233
transcript_113740.nnic	chr6	-	1220	10	NIC	ENSMUSG00000059900.15	novel	843	11	NA	NA	-69	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_8	20.2319878739914	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115739440	115706091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115739233
transcript_113744.known	chr6	+	5474	15	FSM	ENSMUSG00000030319.9	ENSMUST00000075995.7	5474	15	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_11	12.5155005933459	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTACTCATTTTCTTCGCTG	NA	False	NA	NA	False	CATAAA	-17	NA	115751498	115782518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_115751640_115757807_115757952_115758568_115758724_115759697_115759822_115762066_115762333_115763836_115763943_115764090_115764231_115766399_115766693_115768152_115768295_115768629_115770133_115772736_115772833_115774830_115775001_115776820_115776986_115778809_115778918_115780597
transcript_113753.nnic	chr6	-	838	4	NNC	ENSMUSG00000057841.6	novel	906	3	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_3	8439.08515315625	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	25	True	AATAAA	-15	NA	115785666	115782472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_115782650_115783946_115784129_115784762_115784864_115785288
transcript_113754.nnic	chr6	-	807	4	NNC	ENSMUSG00000057841.6	novel	517	4	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_3	8438.61374871489	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	25	True	AATAAA	-15	NA	115785670	115782472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_115782650_115783946_115784129_115784762_115784864_115785323
transcript_113755.known	chr6	-	517	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	1698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	False	NA	-24	True	AATAAA	-22	NA	115785708	115782465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
transcript_113757.known	chr6	-	2384	9	FSM	ENSMUSG00000030321.16	ENSMUST00000184428.6	2384	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	2.36841191518705	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAACAAAACAT	NA	False	NA	NA	False	NA	NA	NA	115815373	115787856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115788195_115789154_115789212_115791461_115791613_115792898_115793113_115794193_115794391_115797005_115797163_115799077_115799264_115800217_115800673_115814744
transcript_113763.known	chr6	-	3614	8	FSM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	37.2010533096435	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTTTGGCATTGTGTT	7881	False	NA	NA	False	AATAAA	-21	NA	115830332	115817657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
transcript_113764.nnic	chr6	-	3482	8	NNC	ENSMUSG00000030322.13	novel	3614	8	NA	NA	-30	0	intron_retention	FALSE	canonical	0	0	junction_7	47.4604023994568	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTTTGGCATTGTGTT	7851	False	NA	NA	False	AATAAA	-21	NA	115830362	115817657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115826028_115826694_115827578_115827801_115830097
transcript_113769.known	chr6	-	2924	8	FSM	ENSMUSG00000030322.13	ENSMUST00000147282.4	2924	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	37.8848954878121	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATTGTT	7887	False	NA	NA	False	NA	NA	NA	115830326	115819304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825355_115826694_115827578_115827801_115829645
transcript_11377.known	chr10	+	350	3	FSM	ENSMUSG00000020156.17	ENSMUST00000139431.2	350	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	194.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTGTTTCTGCTGGGCT	8535	False	NA	NA	False	AAGAAA	-4	NA	80062584	80065005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80062641_80064155_80064273_80064828
transcript_113771.nic	chr6	-	2440	8	NIC	ENSMUSG00000030322.13	novel	2924	8	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_7	15.9770243200181	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATTGTT	7860	False	NA	NA	False	NA	NA	NA	115830353	115819304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115829645
transcript_11378.known	chr10	+	2858	13	FSM	ENSMUSG00000020156.17	ENSMUST00000141962.8	2858	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	151.981267120509	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATATGTGTCATAGTCATT	8464	False	NA	14	True	TATAAA	-12	NA	80062513	80079732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80062539_80064154_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
transcript_113782.nic	chr6	-	1347	4	ISM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	-30	4888	-30	2107	5prime_fragment	FALSE	canonical	0	0	junction_3	48.4033974932431	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACAAGCCTGTATTTT	7851	False	NA	NA	False	NA	NA	NA	115830362	115822545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_115822579_115825866_115826694_115827578_115827801_115830097
transcript_113785.known	chr6	-	2551	9	FSM	ENSMUSG00000030321.16	ENSMUST00000032468.12	2551	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	3.53553390593274	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCGTGTGATTTCCTG	NA	False	NA	NA	False	AATAAA	-37	NA	115815373	115787689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115788195_115789154_115789211_115791460_115791613_115792898_115793113_115794193_115794391_115797005_115797163_115799077_115799264_115800217_115800673_115814744
transcript_113787.known	chr6	+	3765	30	FSM	ENSMUSG00000030323.14	ENSMUST00000112923.7	3765	30	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	14.4972833569763	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCCTCTGGGACCACGG	NA	False	NA	NA	False	NA	NA	NA	115830595	115903291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115859607_115859785_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893933_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
transcript_11379.known	chr10	+	983	9	FSM	ENSMUSG00000020153.15	ENSMUST00000105364.8	983	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	752.129476885463	1319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9361	False	NA	24	True	AATAAA	-15	NA	80084954	80092627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80085039_80085145_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
transcript_113790.known	chr6	+	4056	29	FSM	ENSMUSG00000030323.14	ENSMUST00000038234.13	4056	29	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_21	12.6374080266743	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATCAGTGTCTGCGTTT	NA	False	NA	1	True	AATAAA	-13	NA	115830490	115903651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893930_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
transcript_113801.known	chr6	-	6907	36	FSM	ENSMUSG00000030123.16	ENSMUST00000015511.15	6907	36	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	1.84191559557557	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGCTTTAGCCTTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	115971966	115931771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115932818_115932965_115933041_115933555_115933697_115934486_115934635_115935487_115935652_115935949_115936055_115936270_115936306_115936737_115936802_115936878_115936983_115937386_115937544_115937676_115937824_115939301_115939501_115939655_115939787_115940191_115940297_115940851_115940965_115941036_115941145_115942817_115942933_115943454_115943605_115943697_115943956_115944145_115944237_115944317_115944486_115944709_115944850_115944931_115945032_115945628_115945781_115946268_115946424_115946836_115946931_115947119_115947210_115949432_115949538_115952911_115953015_115953330_115953440_115953530_115953709_115954903_115955034_115955118_115955220_115955439_115955572_115957538_115957716_115970449
transcript_113803.known	chr6	-	5838	6	FSM	ENSMUSG00000030126.18	ENSMUST00000088896.10	5838	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	4.84148737476408	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTTGTTTTGGTTTT	NA	False	NA	1	True	AATAAA	-28	NA	116170447	115995571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115999363_116001762_116001899_116019831_116020767_116110727_116111419_116115155_116115212_116170218
transcript_113807.known	chr6	-	2851	4	FSM	ENSMUSG00000030126.18	ENSMUST00000204353.3	2851	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10.1980390271856	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAGCCGTGTGGATAT	NA	False	NA	NA	False	AATAAA	-15	NA	116084820	115998130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_115999363_116001762_116001899_116019831_116020767_116084272
transcript_113814.known	chr6	+	4307	31	FSM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_27	51.0355975983648	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAGTGCATGGAAGCT	NA	False	NA	31	True	AATAAA	-34	NA	116184998	116239647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
transcript_113819.nic	chr6	+	3943	30	ISM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	-35	2065	-35	1639	5prime_fragment	FALSE	canonical	3	196	junction_27	51.0077049972298	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCCAAAAAGAAAGTTGCAG	NA	False	NA	NA	False	AAGAAA	-2	NA	116184963	116237582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451
transcript_113820.nnic	chr6	+	4258	30	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	3	101	junction_26	58.2477793996823	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	10	True	AATAAA	-13	NA	116184963	116239626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233576_116233790_116235602_116236218_116237451_116237630_116239295
transcript_11383.known	chr10	-	988	6	FSM	ENSMUSG00000020150.14	ENSMUST00000105363.8	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	3.91918358845308	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGTTGGCAGTGAG	9249	False	NA	NA	False	AATAAA	-18	NA	80096846	80093984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
transcript_113847.nic	chr6	+	2825	26	ISM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	-35	7614	-35	0	5prime_fragment	FALSE	canonical	3	253	junction_1	35.0353878243127	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGACCACCCTGTTTC	NA	False	NA	NA	False	AAAAAG	-9	NA	116184963	116232033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009
transcript_113848.nic	chr6	+	2895	26	ISM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	-35	7544	-35	70	5prime_fragment	FALSE	canonical	3	253	junction_1	35.0353878243127	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCACATGGAAAACAGAACCA	NA	False	NA	NA	False	AAGAAA	-4	NA	116184963	116232103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009
transcript_11385.known	chr10	-	950	5	FSM	ENSMUSG00000020150.14	ENSMUST00000148615.2	950	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	3.46410161513775	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATGCTGGTCTGAGACA	9343	False	NA	NA	False	NA	NA	NA	80096752	80094410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
transcript_113853.nic	chr6	+	2807	25	ISM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	-35	8187	-35	-573	5prime_fragment	FALSE	canonical	3	253	junction_1	35.7525251633441	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTCTTCTCAGGCTCA	NA	False	NA	NA	False	NA	NA	NA	116184963	116231460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373
transcript_113855.nic	chr6	+	2715	24	ISM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	-35	8473	-35	-859	5prime_fragment	FALSE	canonical	3	253	junction_1	36.4306835921909	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGGTTAGTCCCACTGAG	NA	False	NA	NA	False	NA	NA	NA	116184963	116231174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050
transcript_113863.nic	chr6	+	2255	21	ISM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	-35	17994	-35	-10380	5prime_fragment	TRUE	canonical	3	253	junction_1	36.9647129029836	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCATTTTTCTAGACTCA	NA	False	NA	NA	False	NA	NA	NA	116184963	116221653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550
transcript_113867.known	chr6	+	2861	25	FSM	ENSMUSG00000024104.12	ENSMUST00000204476.3	2861	25	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_14	32.2597691921894	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGACCACCCTGTTTC	NA	False	NA	NA	False	AAAAAG	-9	NA	116185006	116232033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009
transcript_113868.known	chr6	+	3123	10	FSM	ENSMUSG00000042213.18	ENSMUST00000036503.14	3123	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	4.89393678789894	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGACTTTATTTGATTAT	NA	False	NA	NA	False	AATAAA	-13	NA	116241223	116307260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_116241274_116250533_116250834_116261700_116261777_116262814_116262883_116264942_116265130_116282577_116282723_116290805_116291979_116292548_116292604_116305167_116305286_116306309
transcript_113870.nic	chr6	+	2866	7	NIC	ENSMUSG00000042213.18	novel	3123	10	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	5.31245915016974	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGACTTTATTTGATTAT	NA	False	NA	NA	False	AATAAA	-13	NA	116241149	116307260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_116241274_116250533_116250834_116282577_116282723_116290805_116291979_116292548_116292604_116305167_116305286_116306309
transcript_113875.known	chr6	+	4450	8	FSM	ENSMUSG00000025702.16	ENSMUST00000079012.13	4450	8	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	11.0564414690796	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGATGAGAGTGTTTT	NA	False	NA	10	True	AATAAA	-20	NA	116314984	116386501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_116315177_116315346_116315452_116353653_116353825_116369484_116369536_116377997_116378084_116380380_116380562_116382595_116382744_116382985
transcript_113879.known	chr6	+	4611	7	FSM	ENSMUSG00000025702.16	ENSMUST00000101032.10	4611	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	7.30296743340222	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGATGAGAGTGTTTT	NA	False	NA	10	True	AATAAA	-20	NA	116314993	116386501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_116315452_116353653_116353825_116369484_116369536_116377997_116378084_116380380_116380562_116382595_116382744_116382985
transcript_113882.known	chr6	-	2821	14	FSM	ENSMUSG00000025701.13	ENSMUST00000026795.13	2821	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.923076923076923	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGAATTTATGCTATGA	NA	False	NA	NA	False	NA	NA	NA	116438139	116387037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_116387860_116389420_116389592_116390082_116390184_116390402_116390525_116390698_116390878_116391483_116391571_116392334_116392539_116397201_116397349_116400103_116400277_116401097_116401205_116404103_116404227_116425230_116425313_116431077_116431277_116437835
transcript_113883.known	chr6	-	2375	2	FSM	ENSMUSG00000059878.13	ENSMUST00000057540.6	2375	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGGGAAATTGTTTGCA	NA	False	NA	13	True	AATAAA	-36	NA	116605883	116601864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_116604095_116605738
transcript_113884.known	chr6	-	3187	2	FSM	ENSMUSG00000059878.13	ENSMUST00000079749.6	3187	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTGAATGCCAATGTG	NA	False	NA	NA	False	AATAAA	-10	NA	116605960	116600976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_116604095_116605891
transcript_113886.known	chr6	-	6460	11	FSM	ENSMUSG00000042129.9	ENSMUST00000035842.7	6460	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	5.29528091794949	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCGTGTGTTACTGTTT	8606	False	NA	0	True	AATAAA	-18	NA	116650913	116609968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_116615260_116616401_116616500_116617193_116617316_116618388_116618441_116618645_116618748_116622056_116622218_116622846_116622939_116624527_116624671_116636485_116636562_116638803_116638898_116650684
transcript_113888.known	chr6	-	1243	10	FSM	ENSMUSG00000042129.9	ENSMUST00000203029.3	1243	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.44722135470878	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCGGGCCTCTTCTCTGA	8749	False	NA	NA	False	ATTAAA	-15	NA	116650770	116616184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_116616500_116617193_116617316_116618388_116618441_116618645_116618748_116622056_116622218_116622846_116622939_116624527_116624671_116636485_116636562_116638803_116638898_116650684
transcript_113889.known	chr6	+	2894	3	FSM	ENSMUSG00000061353.12	ENSMUST00000134244.2	2894	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAGCGACAGAAGA	NA	False	NA	NA	False	AAAAAG	-23	NA	117145537	117153088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117145678_117148442_117148561_117150452
transcript_113890.known	chr6	+	2527	1	FSM	ENSMUSG00000104222.2	ENSMUST00000194706.2	2527	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-18	NA	117693302	117695829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117693300_117695800
transcript_113893.known	chr6	+	1128	3	FSM	ENSMUSG00000059689.16	ENSMUST00000223041.2	1128	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	10.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818214	117822916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117818230_117820213_117820354_117821943
transcript_113894.known	chr6	+	1098	3	FSM	ENSMUSG00000059689.16	ENSMUST00000164472.8	1098	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	15	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818202	117822916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117818230_117820213_117820354_117821985
transcript_113895.known	chr6	+	1231	3	FSM	ENSMUSG00000059689.16	ENSMUST00000112860.2	1231	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	10	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTATTTTTCATAATTT	NA	False	NA	11	True	AATAAA	-18	NA	117818241	117822917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117818359_117820213_117820354_117821943
transcript_113896.known	chr6	+	650	3	FSM	ENSMUSG00000059689.16	ENSMUST00000112858.8	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTGGACAGAAACCCTA	NA	False	NA	NA	False	NA	NA	NA	117818241	117822374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117818359_117820213_117820358_117821985
transcript_1139.known	chr1	+	1485	2	FSM	ENSMUSG00000037216.6	ENSMUST00000041621.5	1485	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCCTTTTCCTTAAGG	NA	False	NA	15	True	ATTAAA	-15	NA	37911286	37915309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37911407_37913944
transcript_113901.known	chr6	+	2812	4	FSM	ENSMUSG00000042097.18	ENSMUST00000172088.8	2812	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	8.52447456836295	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTCCAATGTGTTCATTT	NA	False	NA	12	True	TTTAAA	-6	NA	117840037	117849726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117840104_117843355_117843536_117846178_117846235_117847216
transcript_113907.known	chr6	+	3158	3	FSM	ENSMUSG00000042097.18	ENSMUST00000079405.15	3158	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCCCACACGACTACAGG	NA	False	NA	NA	False	AATAAA	-16	NA	117840037	117850252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117840104_117846178_117846235_117847216
transcript_113910.known	chr6	+	538	2	FSM	ENSMUSG00000042097.18	ENSMUST00000112857.3	538	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATTTTTTATCTTT	NA	False	NA	NA	False	TTTAAA	-26	NA	117840044	117847695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117840104_117847216
transcript_113917.known	chr6	+	2271	4	FSM	ENSMUSG00000042079.14	ENSMUST00000167182.8	2271	4	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_1	2299.04709728956	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	NA	False	NA	NA	False	AATAAA	-16	NA	117877300	117902582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117877468_117894430_117894560_117896059_117896121_117900668
transcript_113918.nic	chr6	+	2523	4	NIC	ENSMUSG00000042079.14	novel	2147	4	NA	NA	-2	0	intron_retention	FALSE	canonical	3	521	junction_1	2102.13325510592	1148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3727	False	NA	NA	False	AATAAA	-14	NA	117883748	117902580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_117884170_117894430_117894560_117896059_117896121_117900668
transcript_113921.nnic	chr6	+	2553	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	619	0	at_least_one_novel_splicesite	FALSE	canonical	3	135	junction_1	2283.97154097856	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	4407	False	NA	NA	False	AATAAA	-14	NA	117884428	117902580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_117884880_117894430_117894560_117896059_117896121_117900668
transcript_113923.nnic	chr6	+	2364	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	769	0	at_least_one_novel_splicesite	FALSE	canonical	3	602	junction_1	2063.97825139274	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	4557	False	NA	NA	False	AATAAA	-14	NA	117884578	117902580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_117884841_117894430_117894560_117896059_117896121_117900668
transcript_113925.known	chr6	+	956	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	0	0	0	0	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACAGGCCTGGCACAG	NA	False	NA	NA	False	NA	NA	NA	117893941	117901343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
transcript_113931.known	chr6	+	2147	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	0	0	0	0	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	4031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3734	False	NA	NA	False	AATAAA	-14	NA	117883755	117902580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
transcript_113932.known	chr6	-	550	9	FSM	ENSMUSG00000004988.10	ENSMUST00000204214.3	550	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	4.92442890089805	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912881_117913698_117913742_117914251
transcript_113933.known	chr6	-	815	10	FSM	ENSMUSG00000004988.10	ENSMUST00000203082.3	815	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.17353187858792	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGGTCTTGTGACCC	2162	False	NA	NA	False	ATTAAA	-17	NA	117914653	117910519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912884_117913698_117913742_117914251_117914485_117914580
transcript_113942.known	chr6	+	2227	13	FSM	ENSMUSG00000030134.12	ENSMUST00000203482.2	2227	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	5.92780641459291	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	118043379	118067532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066395_118066469_118066776
transcript_113944.nnic	chr6	+	2298	13	NNC	ENSMUSG00000030134.12	novel	2227	13	NA	NA	-96	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_11	9.46484724300046	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	118043283	118067532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066420_118066469_118066776
transcript_113947.nic	chr6	+	2516	12	NIC	ENSMUSG00000030134.12	novel	2227	13	NA	NA	-81	0	intron_retention	FALSE	canonical	3	24	junction_10	5.7653854529847	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	118043298	118067532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066469_118066776
transcript_113956.known	chr6	-	3661	8	FSM	ENSMUSG00000042042.15	ENSMUST00000049344.15	3661	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	9.61291648072041	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATGTGGTAAGTTCAT	NA	False	NA	NA	False	AATAAA	-24	NA	118116101	118084412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_118086356_118091326_118091409_118096570_118096666_118097905_118098085_118101272_118101375_118103082_118103300_118105655_118106581_118115983
transcript_113964.known	chr6	-	4345	23	FSM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	0	0	0	0	multi-exon	FALSE	canonical	2	285	junction_22	59.9717047606688	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTAGTGATTTATT	8285	False	NA	-1	True	ATTAAA	-16	NA	118396435	118360341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540_118382302_118384971_118385112_118388442_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
transcript_11398.known	chr10	+	1994	12	FSM	ENSMUSG00000069565.13	ENSMUST00000092305.6	1994	12	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_4	263.9061002555	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100907	80124242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113405_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
transcript_113981.known	chr6	-	3683	6	FSM	ENSMUSG00000030145.15	ENSMUST00000069292.14	3683	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	4.48998886412873	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATTGTGTTTCTATTTA	NA	False	NA	NA	False	AATAAA	-24	NA	118432489	118404279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_118407356_118409817_118409908_118410265_118410393_118430806_118430849_118431637_118431873_118432376
transcript_113985.known	chr6	-	3968	6	FSM	ENSMUSG00000072623.7	ENSMUST00000161170.2	3968	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCATGATGTTCATTTATT	NA	False	NA	NA	False	AATAAA	-43	NA	118456281	118438910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_118442362_118442795_118442860_118443788_118443882_118444199_118444327_118454267_118454386_118456166
transcript_113987.nic	chr6	-	2416	21	ISM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	-75	26467	-75	-9620	5prime_fragment	FALSE	canonical	3	23	junction_8	9.78979060041633	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGAAAAGAATGGAAAACAA	NA	False	NA	NA	False	AATAGA	-38	NA	118539262	118504735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118516837_118517411_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
transcript_113991.nic	chr6	-	2012	18	ISM	ENSMUSG00000007827.11	ENSMUST00000112830.3	6930	34	-75	31027	-75	10589	5prime_fragment	FALSE	canonical	3	23	junction_5	10.1966817317743	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAAAATGAAAAATGGGTA	NA	False	NA	NA	False	AAGAAA	-2	NA	118539262	118509295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118516837_118517411_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
transcript_114.known	SIRV3	+	1083	8	FSM	SIRV3A	SIRV304	1083	8	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_6	907.203057620014	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTTAACGTCTCGTAAG	NA	False	NA	NA	False	NA	NA	NA	1963	8937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7367_7872_7989_8124_8208_8755
transcript_1140.known	chr1	+	812	2	FSM	ENSMUSG00000037216.6	ENSMUST00000142670.2	812	2	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAAGAGCAACGCCACTC	NA	False	NA	NA	False	NA	NA	NA	37911454	37914541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37911670_37913944
transcript_114009.nnic	chr6	+	1972	9	NNC	ENSMUSG00000041477.15	novel	3313	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_7	15.8981130955846	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTCTGGGGGTTTTGTT	NA	False	NA	9	True	AGTAAA	-16	NA	119152213	119197167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194694_119194941_119196963
transcript_114010.known	chr6	+	3313	9	FSM	ENSMUSG00000041477.15	ENSMUST00000112777.9	3313	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	11.8684192291981	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTATACTTATGCTTTA	NA	False	NA	NA	False	AATAAA	-28	NA	119152213	119198577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194763_119194941_119196963
transcript_114011.known	chr6	+	1748	9	FSM	ENSMUSG00000041477.15	ENSMUST00000073909.6	1748	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	19.2447233027654	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAATGTTTTATACTGT	NA	False	NA	-12	True	NA	NA	NA	119152248	119197146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194862_119194941_119196963
transcript_114022.known	chr6	-	3489	8	FSM	ENSMUSG00000030168.14	ENSMUST00000169744.8	3489	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_7	15.2168005969771	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATCAGCAGCCAGACGC	NA	False	NA	NA	False	NA	NA	NA	119365647	119330725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119365442
transcript_114023.known	chr6	-	4184	8	FSM	ENSMUSG00000030168.14	ENSMUST00000032272.13	4184	8	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_7	32.1685611510775	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTGTGTTTTTTTTT	7325	False	NA	0	True	AATAAA	-21	NA	119394665	119330110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119394380
transcript_114043.known	chr6	-	2174	5	FSM	ENSMUSG00000030170.15	ENSMUST00000117171.8	2174	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	2.73861278752583	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTCCCTCTCCTTATT	NA	False	NA	NA	False	ATTAAA	-17	NA	119426347	119409491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_119410818_119417242_119417536_119423295_119423544_119425096_119425234_119426177
transcript_114044.known	chr6	-	2339	5	FSM	ENSMUSG00000030170.15	ENSMUST00000119369.2	2339	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	5.21416340365355	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTTCTCTCCCTCTCCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	119521279	119409494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_119410818_119417242_119417536_119423295_119423544_119425096_119425234_119520941
transcript_114046.known	chr6	+	2963	1	FSM	ENSMUSG00000030019.7	ENSMUST00000032094.7	2963	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCCCCTTGTATCTGTGA	NA	False	NA	42	True	AATAAA	-43	NA	119456628	119459591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_119456600_119459600
transcript_114049.nic	chr6	-	2767	12	NIC	ENSMUSG00000030172.16	novel	8760	21	NA	NA	-12	-22052	combination_of_known_junctions	FALSE	canonical	3	90	junction_8	10.6971843055131	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGAAGAATGACAAAGATA	NA	False	NA	NA	False	NA	NA	NA	119825140	119720290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_119720443_119726798_119726940_119728160_119728302_119730219_119730358_119738104_119738273_119750694_119750863_119754948_119755033_119756437_119756594_119760349_119760425_119773867_119774285_119801346_119802171_119824837
transcript_114064.nic	chr6	-	1523	3	ISM	ENSMUSG00000030172.16	ENSMUST00000183880.8	4656	19	-64	222351	-12	-24222	5prime_fragment	FALSE	canonical	3	98	junction_2	7.5	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAATAATATGTTGAGAGA	NA	False	NA	NA	False	NA	NA	NA	119825140	119773888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_119774285_119801346_119802171_119824837
transcript_114066.known	chr6	+	1617	12	FSM	ENSMUSG00000030166.15	ENSMUST00000032269.12	1617	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_11	16.8914864369477	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCTTTGGCTTCAGGT	NA	False	NA	3	True	ATTAAA	-16	NA	119879736	119899784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767_119897990_119899435
transcript_114067.known	chr6	+	1603	11	FSM	ENSMUSG00000030166.15	ENSMUST00000161816.8	1603	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	12.9769025580067	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAAGAAAGGGTGGGGG	NA	False	NA	NA	False	NA	NA	NA	119879688	119898276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767
transcript_114068.known	chr6	+	1604	11	FSM	ENSMUSG00000030166.15	ENSMUST00000161045.8	1604	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	16.2419210686421	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGCTTCAGGTTTTTA	NA	False	NA	8	True	ATTAAA	-21	NA	119879663	119899789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767_119897990_119899432
transcript_114076.nnic	chr6	-	2751	8	NNC	ENSMUSG00000045962.17	novel	5745	10	NA	NA	-84	112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5.17450579322138	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGAGAGCAGTTTCAA	7074	False	NA	NA	False	AAAAAG	-5	NA	120015717	119946402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_119946532_119947818_119948039_119949728_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834_120015314_120015435
transcript_114079.nic	chr6	-	2843	7	ISM	ENSMUSG00000045962.17	ENSMUST00000159397.8	5745	10	-119	15792	-54	112	5prime_fragment	FALSE	canonical	2	6	junction_4	3.590109871423	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGAGAGCAGTTTCAA	7104	False	NA	NA	False	AAAAAG	-5	NA	120015687	119946402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_119946532_119947818_119948039_119949728_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834
transcript_114080.nnic	chr6	-	2523	7	NNC	ENSMUSG00000045962.17	novel	5745	10	NA	NA	-84	-210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	5.39804491356722	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAAGAAATTAAAGGG	7074	False	NA	NA	False	ATTAAA	-19	NA	120015717	119947917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_119948039_119949728_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834_120015314_120015435
transcript_114083.nic	chr6	-	2615	6	ISM	ENSMUSG00000045962.17	ENSMUST00000159397.8	5745	10	-119	17307	-54	-210	5prime_fragment	FALSE	canonical	2	6	junction_3	3.84707681233427	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAAGAAATTAAAGGG	7104	False	NA	NA	False	ATTAAA	-19	NA	120015687	119947917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_119948039_119949728_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834
transcript_114085.nnic	chr6	-	2332	6	NNC	ENSMUSG00000045962.17	novel	5745	10	NA	NA	-22	-2029	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5.60713830755047	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAAGGTAAGTTGCTTC	7136	False	NA	NA	False	AGTAAA	-35	NA	120015655	119949736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834_120015314_120015435
transcript_114087.nic	chr6	-	2486	5	ISM	ENSMUSG00000045962.17	ENSMUST00000159397.8	5745	10	-119	19126	-54	-2029	5prime_fragment	FALSE	canonical	2	6	junction_2	4.15331193145904	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAAGGTAAGTTGCTTC	7104	False	NA	NA	False	AGTAAA	-35	NA	120015687	119949736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834
transcript_114092.nnic	chr6	-	1803	3	NNC	ENSMUSG00000045962.17	novel	10575	28	NA	NA	0	-31493	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGTTTTAGTGACTGA	7158	False	NA	NA	False	AGTAAA	-11	NA	120015633	119979200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_119979327_120013834_120015314_120015435
transcript_114095.nic	chr6	-	1979	2	ISM	ENSMUSG00000045962.17	ENSMUST00000159397.8	5745	10	-119	48590	-54	-31493	5prime_fragment	FALSE	canonical	3	11	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGTTTTAGTGACTGA	7104	False	NA	NA	False	AGTAAA	-11	NA	120015687	119979200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_119979327_120013834
transcript_114097.known	chr6	-	2934	2	FSM	ENSMUSG00000045962.17	ENSMUST00000159903.2	2934	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGGTTGTTCTTTCTGA	NA	False	NA	-1	True	AATAAA	-21	NA	119904222	119900929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_119903649_119904007
transcript_114098.known	chr6	-	10575	28	FSM	ENSMUSG00000045962.17	ENSMUST00000060043.13	10575	28	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_17	5.22340412157474	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGGTTGTTCTTTCTGA	7158	False	NA	-1	True	AATAAA	-21	NA	120015633	119900929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935_119926381_119926968_119927092_119927203_119927262_119927459_119927634_119927975_119928093_119928595_119928759_119928858_119928957_119929645_119929931_119930731_119931194_119933031_119933158_119937604_119937686_119945436_119945625_119946197_119946532_119947818_119948039_119949728_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834
transcript_114099.known	chr6	-	2958	20	FSM	ENSMUSG00000041372.11	ENSMUST00000212457.2	2958	20	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_7	11.0924096230953	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGGGTGGGCCAGCCGCT	NA	False	NA	NA	False	AATGAA	-11	NA	120271520	120180770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_120180880_120183439_120183567_120184083_120184238_120185866_120185940_120186193_120186348_120187052_120187370_120191707_120192462_120193234_120193297_120193516_120193618_120194416_120194527_120195828_120195973_120199024_120199092_120199233_120199313_120200561_120200630_120201036_120201138_120201505_120201597_120202053_120202150_120208474_120208553_120209848_120209953_120271351
transcript_114100.known	chr6	-	3677	20	FSM	ENSMUSG00000041372.11	ENSMUST00000057283.8	3677	20	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	11.9409906464132	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAAGAAATGCCCCTT	NA	False	NA	NA	False	NA	NA	NA	120271520	120180054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_120180880_120183439_120183567_120184083_120184238_120185866_120185940_120186193_120186348_120187052_120187370_120191707_120192465_120193234_120193297_120193516_120193618_120194416_120194527_120195828_120195973_120199024_120199092_120199233_120199313_120200561_120200630_120201036_120201138_120201505_120201597_120202053_120202150_120208474_120208553_120209848_120209953_120271351
transcript_114115.nic	chr6	+	5118	27	ISM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	-17	12606	-17	-75	5prime_fragment	FALSE	canonical	3	38	junction_13	6.86093909075868	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATTAAATGTGGACAA	NA	False	NA	NA	False	GATAAA	-16	NA	120341067	120408929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120385205_120385321_120389115_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773
transcript_114116.nic	chr6	+	5422	27	ISM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	-246	12531	-246	0	5prime_fragment	FALSE	canonical	3	38	junction_13	6.86093909075868	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAGAAAAGGCTGC	NA	False	NA	NA	False	AATAAA	-37	NA	120340838	120409004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120385205_120385321_120389115_120389472_120392176_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773
transcript_114119.nic	chr6	+	3807	22	ISM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	-27	25101	-27	0	5prime_fragment	FALSE	canonical	3	38	junction_13	6.96183310496638	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAGGAGAAGG	NA	False	NA	NA	False	AAAAAG	-15	NA	120341057	120396434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120385205_120385321_120389115_120389472_120392176_120392316_120395519_120395700_120396360
transcript_114121.known	chr6	+	3665	21	FSM	ENSMUSG00000030180.16	ENSMUST00000135802.8	3665	21	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_17	13.5797643573075	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAGGAGAAGG	NA	False	NA	NA	False	AAAAAG	-15	NA	120341084	120396434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877_120359984_120362582_120362675_120364970_120365130_120365890_120366011_120366513_120366673_120367614_120367797_120371047_120371211_120375898_120376019_120379466_120379662_120381925_120382108_120382820_120382946_120383535_120383687_120389115_120389472_120392176_120392316_120395519_120395700_120396360
transcript_114127.known	chr6	-	1887	12	FSM	ENSMUSG00000030177.15	ENSMUST00000112703.8	1887	12	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	38.004349468349	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATCAAAACCAGAGAGGAA	NA	False	NA	NA	False	NA	NA	NA	120334433	120301995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
transcript_114129.known	chr6	-	2610	12	FSM	ENSMUSG00000030177.15	ENSMUST00000032283.12	2610	12	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_10	52.5397920824409	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	-14	True	AATAAA	-18	NA	120334390	120301283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
transcript_11413.known	chr10	+	500	4	FSM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	0	0	0	0	multi-exon	FALSE	canonical	3	5732	junction_1	1157.99510649513	3748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6342	False	NA	30	True	AATAAA	-21	NA	80128286	80129948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80128318_80128608_80128695_80129475_80129711_80129800
transcript_114139.nic	chr6	-	2037	12	NIC	ENSMUSG00000030177.15	novel	1887	12	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	79.1423030510953	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATCAAAACCAGAGAGGAA	NA	False	NA	NA	False	NA	NA	NA	120341330	120301995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120341034
transcript_114151.known	chr6	-	1095	9	FSM	ENSMUSG00000030177.15	ENSMUST00000144131.8	1095	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	88.6621924779666	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTCGTTCTTTCCTGG	NA	False	NA	NA	False	AATATA	-6	NA	120334371	120308772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319039_120325348_120325492_120327167_120327352_120330961_120331016_120334287
transcript_114154.nic	chr6	+	1283	6	ISM	ENSMUSG00000030180.16	ENSMUST00000135802.8	3665	21	-25	36461	-25	-5088	5prime_fragment	FALSE	canonical	3	44	junction_5	5.74804314527997	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAAGAAGGTAAAATCTG	NA	False	NA	NA	False	GGGGCT	-37	NA	120341059	120359973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877
transcript_114155.nic	chr6	+	1187	5	ISM	ENSMUSG00000030180.16	ENSMUST00000135802.8	3665	21	-25	37804	-25	-6431	5prime_fragment	FALSE	canonical	3	49	junction_1	4.9180788932265	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCTGTCAGTGTCCATTT	NA	False	NA	NA	False	AATGAA	-38	NA	120341059	120358630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495
transcript_114158.nic	chr6	+	902	4	ISM	ENSMUSG00000030180.16	ENSMUST00000135802.8	3665	21	-7	44618	-7	5247	5prime_fragment	FALSE	canonical	3	49	junction_1	2.35702260395516	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGAAATGGTCTAAAGT	NA	False	NA	NA	False	NA	NA	NA	120341077	120351816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777
transcript_114162.known	chr6	+	7752	13	FSM	ENSMUSG00000002897.6	ENSMUST00000002976.5	7752	13	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_10	8.77931596930472	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTGTGTATTTATTTT	312	False	NA	NA	False	ATTAAA	-19	NA	120440207	120464520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_120440428_120449052_120449078_120449886_120450034_120450714_120450828_120451250_120451378_120452189_120452238_120452416_120452581_120453850_120453935_120454356_120454442_120455124_120455137_120455335_120455444_120456963_120457006_120457943
transcript_114171.nnic	chr6	-	2252	8	NNC	ENSMUSG00000058979.8	novel	1928	8	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	78.843425307921	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	35	True	ATTAAA	-21	NA	120508295	120486454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120507818
transcript_114173.known	chr6	-	1928	8	FSM	ENSMUSG00000058979.8	ENSMUST00000075303.7	1928	8	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	16.3245151817249	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	35	True	ATTAAA	-21	NA	120508280	120486454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_114180.nnic	chr6	-	996	7	NNC	ENSMUSG00000058979.8	novel	1882	3	NA	NA	-15	-3364	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	80.8386596183341	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGAAATTCTTTTGTT	NA	False	NA	NA	False	AAGAAA	-7	NA	120508295	120489818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_120490030_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_114189.known	chr6	+	9212	19	FSM	ENSMUSG00000071226.12	ENSMUST00000112686.8	9212	19	0	0	0	0	multi-exon	TRUE	canonical	3	53	junction_14	26.8930781860498	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCTTTCGTGTATGTG	NA	False	NA	4	True	TATAAA	-17	NA	120643381	120748151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120720743_120720828_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733815_120734526_120734653_120734775_120735593_120738101_120739519_120742232_120742345_120743372
transcript_11419.known	chr10	+	572	3	FSM	ENSMUSG00000063457.15	ENSMUST00000062674.7	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	7729	junction_2	373	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAAAGACTGGTTTTGGT	6534	False	NA	3	True	NA	NA	NA	80128478	80129921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80128695_80129475_80129711_80129800
transcript_114192.known	chr6	+	4849	19	FSM	ENSMUSG00000071226.12	ENSMUST00000100993.9	4849	19	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_14	24.9109525220445	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTGTATATATAGTGGG	NA	False	NA	NA	False	NA	NA	NA	120643542	120743865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_120643669_120697828_120697924_120708220_120708405_120710691_120710832_120711518_120711624_120714059_120714110_120715116_120715287_120720743_120720828_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733899_120734526_120734653_120734775_120735593_120738101_120739519_120742232_120742345_120743372
transcript_11420.known	chr10	-	1649	2	FSM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGGCTCGCTTTATTA	8717	False	NA	NA	False	GATAAA	-19	NA	80156371	80154087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80155382_80156016
transcript_114202.known	chr6	+	641	3	FSM	ENSMUSG00000071226.12	ENSMUST00000135109.2	641	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	64	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCAGGATGTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	120643495	120701709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_120643669_120697828_120697924_120701336
transcript_114204.known	chr6	-	1312	9	FSM	ENSMUSG00000019210.11	ENSMUST00000019354.11	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	841	junction_3	98.1488028454754	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799754	120772204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
transcript_114206.nic	chr6	-	311	3	ISM	ENSMUSG00000019210.11	ENSMUST00000203432.2	731	5	-61	4643	47	-801	5prime_fragment	FALSE	canonical	3	1099	junction_2	1.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGATTGAGCAGCAGAAGA	NA	False	NA	NA	False	AAGAAA	-6	NA	120799707	120785346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_120785433_120795294_120795361_120799548
transcript_114213.nnic	chr6	+	3026	8	NNC	ENSMUSG00000009112.5	novel	6925	7	NA	NA	-9	-3839	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	72.8148336535901	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAAGACCTGATGTTTT	NA	False	NA	10	True	AATAAA	-21	NA	120813163	120865964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638_120864207_120864301
transcript_114215.nnic	chr6	+	3063	7	NNC	ENSMUSG00000009112.5	novel	6925	7	NA	NA	-19	-3842	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	75.5036790862244	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCACCAAGACCTGATGT	NA	False	NA	7	True	AATAAA	-18	NA	120813153	120865961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_120813319_120825416_120825513_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638
transcript_114218.known	chr6	+	6925	7	FSM	ENSMUSG00000009112.5	ENSMUST00000009256.4	6925	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	15.192286054296	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGACTCATCTTTTTGT	NA	False	NA	17	True	AATAAA	-18	NA	120813198	120869803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638
transcript_11422.known	chr10	+	2015	6	FSM	ENSMUSG00000035504.17	ENSMUST00000186864.7	2015	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	273.806939283868	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGTGTGTCCGCTAAGCT	7219	False	NA	17	True	AATAAA	-18	NA	80165978	80172274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170546_80170628_80170943
transcript_114223.nnic	chr6	-	2085	7	NIC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	-28	-267	combination_of_known_splicesites	FALSE	canonical	3	32	junction_5	439.124507780348	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTGGGAGAGCTGTAT	NA	False	NA	-28	True	AATAAA	-14	NA	120893842	120870081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120883389_120883525_120893694
transcript_11423.known	chr10	+	2127	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	7027	False	NA	18	True	AATAAA	-19	NA	80165786	80172275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
transcript_114231.known	chr6	-	2189	6	FSM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_5	85.8011654932496	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTCACCAGTTATCATAA	NA	False	NA	NA	False	AGTAAA	-16	NA	120893814	120869814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
transcript_114232.nnic	chr6	-	1873	6	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	-44	-267	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_5	358.381137896514	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTGGGAGAGCTGTAT	NA	False	NA	-28	True	AATAAA	-14	NA	120893858	120870081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893787
transcript_114244.nic	chr6	-	3519	21	NIC	ENSMUSG00000051586.18	novel	9204	32	NA	NA	-72	-14812	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	16.1133485036475	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTCACTTTACATCCTGC	NA	False	NA	NA	False	NA	NA	NA	121087126	120950115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_120950609_120959492_120959689_120978568_120978657_120979747_120979837_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956_121019296_121086976
transcript_11425.known	chr10	-	1957	13	FSM	ENSMUSG00000043822.19	ENSMUST00000095446.10	1957	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	5.64702478203247	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATCCCTCGCCCCTCA	NA	False	NA	NA	False	NA	NA	NA	80184246	80176674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80177291_80177422_80177495_80177576_80177776_80177892_80178057_80178140_80178228_80178742_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181248_80181346_80181538_80183390_80183460_80184189
transcript_114253.nic	chr6	-	2930	19	NIC	ENSMUSG00000051586.18	novel	2953	19	NA	NA	-76	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	23.4668797338812	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTATTTGTCCTTTAGT	NA	False	NA	-6	True	AATAAA	-18	NA	121087130	120984201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_120984391_120985955_120986143_120996656_120996741_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956_121019296_121086976
transcript_114259.nic	chr6	-	3048	18	NIC	ENSMUSG00000051586.18	novel	2875	18	NA	NA	-278	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	13.1507101127881	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTATTTGTCCTTTAGT	NA	False	NA	-6	True	AATAAA	-18	NA	121087332	120984201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_120984391_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956_121019296_121086976
transcript_114267.known	chr6	+	4093	5	FSM	ENSMUSG00000067825.12	ENSMUST00000088561.10	4093	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	5.31507290636732	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATCTGTTTCTACTTTC	NA	False	NA	NA	False	NA	NA	NA	121160625	121173151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_121161442_121162668_121162810_121164217_121164526_121167059_121167207_121170470
transcript_114269.known	chr6	+	3861	5	FSM	ENSMUSG00000067825.12	ENSMUST00000120066.8	3861	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	16.7406690427832	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAATTTCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	121160847	121173144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_121161442_121162668_121162810_121164217_121164526_121167059_121167207_121170473
transcript_114272.known	chr6	+	3778	4	FSM	ENSMUSG00000067825.12	ENSMUST00000118234.8	3778	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	19.1543438647449	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAATTTCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	121160625	121173144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_121161442_121162668_121162810_121167059_121167207_121170470
transcript_114273.nnic	chr6	+	1643	5	NNC	ENSMUSG00000030137.9	novel	2263	5	NA	NA	-8494	-759	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	2.06155281280883	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTATGCCTCTTTCTTTG	NA	False	NA	1	True	AATATA	-12	NA	121179160	121203054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_121179441_121197342_121197566_121198259_121198409_121199692_121200374_121202744
transcript_114274.known	chr6	+	2263	5	FSM	ENSMUSG00000030137.9	ENSMUST00000032233.9	2263	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.0480325552622	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCTGGGGTGTACAGTT	2191	False	NA	NA	False	AATAAA	-10	NA	121187654	121203813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_121187796_121197342_121197566_121198259_121198409_121199692_121200374_121202744
transcript_114276.known	chr6	+	4605	36	FSM	ENSMUSG00000030111.10	ENSMUST00000032203.9	4605	36	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	9.3958740402153	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTCCTTCATTAACTGAG	NA	False	NA	27	True	AATAAA	-25	NA	121613186	121656186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_121613355_121615234_121615419_121616164_121616322_121616473_121616527_121617943_121617965_121618230_121618400_121618947_121619033_121621073_121621195_121621852_121621968_121622110_121622221_121623757_121623920_121624907_121625136_121625563_121625628_121626725_121626869_121631423_121631574_121634338_121634507_121634891_121634968_121636245_121636373_121636878_121637108_121637801_121637929_121638385_121638508_121639351_121639404_121644073_121644158_121645004_121645182_121645487_121645576_121646470_121646628_121646894_121646970_121647860_121648042_121650425_121650650_121651689_121651909_121652077_121652206_121653009_121653101_121653862_121653932_121654940_121655044_121655477_121655520_121656050
transcript_11428.known	chr10	-	3520	12	FSM	ENSMUSG00000043822.19	ENSMUST00000124789.8	3520	12	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_2	5.22865594347215	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCGAAGGCCTGATGTCA	NA	False	NA	NA	False	NA	NA	NA	80184246	80175626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80177291_80177422_80177495_80177576_80177776_80177892_80178057_80178140_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181248_80181346_80181538_80183390_80183460_80184189
transcript_114281.known	chr6	+	2539	8	FSM	ENSMUSG00000007458.15	ENSMUST00000112610.2	2539	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	593.666263697931	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2664	False	NA	6	True	ATTAAA	-15	NA	122285678	122294639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122286126_122288562_122288587_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
transcript_114286.known	chr6	+	2515	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	0	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	1519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2664	False	NA	6	True	ATTAAA	-15	NA	122285678	122294639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
transcript_11429.known	chr10	-	989	8	FSM	ENSMUSG00000043822.19	ENSMUST00000105352.2	989	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	4.16986271980755	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGCCTCCCCTCAGTA	NA	False	NA	NA	False	AATAGA	-16	NA	80184246	80178572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181248_80181346_80181538_80183390_80183460_80184189
transcript_114293.known	chr6	+	2976	6	FSM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	0	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_4	60.7466871524695	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTGGTTGCCTCAAGTT	2943	False	NA	11	True	ATTAAA	-18	NA	122285957	122293748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122292126_122292262_122292394_122293008_122293136_122293286
transcript_114315.known	chr6	-	3683	13	FSM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	201.860702108052	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTACTGCATTCTGCT	9596	False	NA	-12	True	ATTAAA	-41	NA	122313974	122294689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816
transcript_114316.known	chr6	-	3289	15	FSM	ENSMUSG00000040669.15	ENSMUST00000160163.8	3289	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_12	285.154952506134	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACACCTACCCTAATCCA	9122	False	NA	-11	True	AATAAA	-14	NA	122316571	122295261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311924_122312043_122313816_122313975_122316556
transcript_114317.known	chr6	-	3530	14	FSM	ENSMUSG00000040669.15	ENSMUST00000161877.8	3530	14	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_11	292.50572239383	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACACCTACCCTAATCCA	9122	False	NA	-11	True	AATAAA	-14	NA	122316571	122295261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311924_122312043_122313816_122313975_122316556
transcript_114320.known	chr6	-	4725	6	FSM	ENSMUSG00000040649.16	ENSMUST00000068242.9	4725	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_5	43.1907397482377	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCACTGCTTTCTTTTGTTT	9240	False	NA	NA	False	AATATA	-21	NA	122463464	122430059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497_122449723_122463049
transcript_11433.known	chr10	+	2100	15	FSM	ENSMUSG00000035486.15	ENSMUST00000105351.2	2100	15	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_11	2.25876975726313	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCTTCCTTTTTGTTT	NA	False	NA	14	True	AATAAA	-20	NA	80192292	80201323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80192502_80193817_80193926_80194075_80194193_80194620_80194751_80195075_80195164_80195243_80195340_80195988_80196188_80196273_80196401_80196519_80196597_80196955_80197029_80197237_80197316_80198842_80199000_80199849_80199980_80200056_80200168_80200923
transcript_114332.known	chr6	+	471	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2390	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTATGCGTTAATAAAA	NA	False	NA	-44	True	NA	NA	NA	122433862	122434333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122433900_122434300
transcript_114333.known	chr6	+	1506	10	FSM	ENSMUSG00000030116.15	ENSMUST00000148517.8	1506	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	61.5529481998934	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTCACGGGCATGTTT	NA	False	NA	NA	False	TTTAAA	-10	NA	122490541	122506249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122490692_122491299_122491360_122492306_122492343_122497537_122497571_122497854_122497888_122498851_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_114335.nic	chr6	+	604	5	ISM	ENSMUSG00000030116.15	ENSMUST00000142896.8	425	9	8149	-294	-674	0	3prime_fragment	FALSE	canonical	3	18	junction_1	53.3479146733966	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	7057	False	NA	4	True	AATACA	-15	NA	122498783	122505591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_114337.nnic	chr6	+	556	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	336	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	8067	False	NA	4	True	AATACA	-15	NA	122499793	122505591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_114338.nnic	chr6	+	1214	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	336	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTCACGGGCATGTTT	8067	False	NA	NA	False	TTTAAA	-10	NA	122499793	122506249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_114344.known	chr6	-	2127	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112585.8	2127	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.10453160549186	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTGTTTTTGTGTTTGT	8724	False	NA	NA	False	AGTAAA	-12	NA	122579330	122554759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568164_122573590_122573737_122577016_122577085_122579215
transcript_114349.known	chr6	-	2125	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_1	0	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGATTTTGTTAAGGTG	9980	False	NA	NA	False	NA	NA	NA	122587046	122582361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_122584095_122586654
transcript_114350.known	chr6	-	427	2	FSM	ENSMUSG00000030117.6	ENSMUST00000204882.2	427	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAAAGTCCAAGATTG	9944	False	NA	NA	False	NA	NA	NA	122586783	122584985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_122585284_122586654
transcript_114354.known	chr6	+	833	4	FSM	ENSMUSG00000046323.9	ENSMUST00000049644.9	833	4	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_3	656.420766141826	872	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	680	False	NA	24	True	AATAAA	-14	NA	122603368	122607231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122603570_122605535_122605769_122606259_122606296_122606868
transcript_114356.nnic	chr6	-	1550	2	Genic_Genomic	ENSMUSG00000080932.4	novel	615	1	NA	NA	-8298	73	multi-exon	FALSE	canonical	3	11	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGGGTTTCTCTGTGTAG	NA	False	NA	NA	False	AATAAA	-39	NA	122684285	122675299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr6_-_122676037_122683472
transcript_114357.known	chr6	-	615	1	FSM	ENSMUSG00000080932.4	ENSMUST00000119496.2	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACACATGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	122675987	122675372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_122675400_122676000
transcript_114360.known	chr6	+	1995	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112581.8	1995	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	1913.25775837967	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684447	122691592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122684476_122684770_122684893_122688496_122688763_122689587_122689675_122690100
transcript_114362.known	chr6	+	2011	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112580.8	2011	5	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	1758.10842953442	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684523	122691592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122684568_122684770_122684893_122688496_122688763_122689587_122689675_122690100
transcript_114363.known	chr6	+	2211	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	0	0	0	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	1861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684526	122691592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
transcript_114384.known	chr6	-	3959	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	0	0	0	0	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	8620	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATTTTTCCCCCTCTTG	9816	False	NA	-4	True	AATAAA	-29	NA	122719704	122704767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
transcript_114385.known	chr6	+	2368	1	FSM	ENSMUSG00000107868.2	ENSMUST00000204407.2	2368	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTGGCCCATTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	122788128	122790496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122788100_122790500
transcript_114386.known	chr6	+	5283	11	FSM	ENSMUSG00000003154.16	ENSMUST00000003238.14	5283	11	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_1	4.4	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTAGTTTTTATGTTA	2577	False	NA	75	True	AATAAA	-20	NA	122796872	122822325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122797930_122805115_122805463_122808394_122808470_122809896_122809966_122810119_122810261_122810639_122810836_122814779_122815164_122815542_122815645_122816419_122816630_122817184_122817284_122819722
transcript_114392.known	chr6	+	2476	8	FSM	ENSMUSG00000030327.9	ENSMUST00000032477.6	2476	8	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_7	29.158959137102	601	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTTTTCATCTTTTA	788	False	NA	9	True	ATTAAA	-15	NA	122851432	122865900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
transcript_114398.known	chr6	-	3075	15	FSM	ENSMUSG00000005069.13	ENSMUST00000112531.8	3075	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	32.7566787083184	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTCCGCTGCTGACGTT	NA	False	NA	-1	True	AATAAA	-44	NA	124391822	124373775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391725
transcript_114399.known	chr6	-	3139	16	FSM	ENSMUSG00000005069.13	ENSMUST00000035861.6	3139	16	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	30.6939009504422	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACTGACGTGGGTAGGT	NA	False	NA	-16	True	AATAAA	-29	NA	124391996	124373790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381091_124381203_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
transcript_114400.known	chr6	-	3073	15	FSM	ENSMUSG00000005069.13	ENSMUST00000080557.12	3073	15	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_8	13.6099078555564	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTCCGCTGCTGACGTT	NA	False	NA	-1	True	AATAAA	-44	NA	124392026	124373775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
transcript_114401.known	chr6	-	4014	18	FSM	ENSMUSG00000008153.13	ENSMUST00000008297.5	4014	18	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_17	12.5334155436701	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTGCTTGCTGTTTACC	8440	False	NA	NA	False	AATAAA	-15	NA	124441753	124407717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124408692_124408916_124409120_124413776_124413913_124414333_124414480_124415228_124415400_124415717_124415945_124426448_124426598_124426732_124426891_124427664_124427719_124428264_124428428_124433835_124433949_124434814_124435097_124435502_124435689_124436116_124436267_124436724_124436934_124438490_124438687_124439068_124439192_124441379
transcript_114404.nic	chr6	-	2438	8	ISM	ENSMUSG00000008153.13	ENSMUST00000112523.8	3703	18	12539	0	-33	0	3prime_fragment	FALSE	canonical	3	22	junction_7	10.5211157940126	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTGCTTGCTGTTTACC	9220	False	NA	NA	False	AATAAA	-15	NA	124427164	124407717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_124408692_124408916_124409120_124413776_124413913_124414333_124414480_124415228_124415400_124415717_124415945_124426448_124426598_124426732
transcript_114405.known	chr6	+	3010	6	FSM	ENSMUSG00000038527.10	ENSMUST00000049124.10	3010	6	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_3	3.13687742827162	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATATGGTTGATTCT	NA	False	NA	NA	False	NA	NA	NA	124470071	124487602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124470190_124470773_124471003_124482189_124482380_124483850_124483953_124484048_124484124_124485306
transcript_114408.known	chr6	-	2906	12	FSM	ENSMUSG00000038521.18	ENSMUST00000162443.8	2906	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	4.09797369803078	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGGTCTGCTTTTTTT	NA	False	NA	NA	False	AGTAAA	-14	NA	124519318	124507306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124508700_124509499_124509575_124510232_124510362_124510854_124510934_124511316_124511433_124512191_124512346_124513290_124513491_124514319_124514446_124517279_124517458_124517747_124517956_124518291_124518448_124519226
transcript_114411.known	chr6	+	2281	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	0	0	0	0	multi-exon	TRUE	canonical	3	738	junction_2	58.4776785524946	741	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATACAGTGTTGTCTC	NA	False	NA	NA	False	AATAAA	-25	NA	124639989	124681381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
transcript_114438.known	chr6	-	1034	6	FSM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_5	105.298433036774	1189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	-14	True	TATAAA	-19	NA	124689141	124681343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
transcript_114441.nic	chr6	-	1361	5	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-29	0	intron_retention	FALSE	canonical	3	1245	junction_4	117.50957407803	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	-14	True	TATAAA	-19	NA	124689170	124681343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_124681622_124681901_124682052_124682120_124682620_124682703_124682806_124688838
transcript_114443.known	chr6	-	917	5	FSM	ENSMUSG00000004268.12	ENSMUST00000142187.8	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_4	110.261904119238	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGACTGCAGAGTGGGG	NA	False	NA	-91	True	NA	NA	NA	124689032	124681420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124681622_124681901_124682180_124682477_124682620_124682703_124682806_124688838
transcript_114449.known	chr6	-	1074	3	FSM	ENSMUSG00000004268.12	ENSMUST00000141251.2	1074	3	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_2	29.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGGCAAGGTACAGTC	NA	False	NA	NA	False	NA	NA	NA	124689104	124681913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124682620_124682703_124682806_124688838
transcript_114456.known	chr6	+	1318	10	FSM	ENSMUSG00000004264.18	ENSMUST00000004375.16	1318	10	0	0	0	0	multi-exon	FALSE	canonical	1	924	junction_9	595.782978965236	5354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693387_124693394_124693568
transcript_11446.known	chr10	-	1662	7	FSM	ENSMUSG00000035478.15	ENSMUST00000092295.10	1662	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_6	355.847657791302	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235384	80228372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
transcript_11447.known	chr10	-	1566	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_6	141.458376288653	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235384	80228372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
transcript_114476.known	chr6	+	1122	3	FSM	ENSMUSG00000004264.18	ENSMUST00000124779.8	1122	3	0	0	0	0	multi-exon	FALSE	canonical	3	2675	junction_2	3.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCTAGGCTGTACAGTAA	NA	False	NA	NA	False	NA	NA	NA	124689298	124690833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124689527_124689666_124689752_124690024
transcript_114477.known	chr6	+	271	1	FSM	ENSMUSG00000088835.3	ENSMUST00000158210.3	271	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGGGGATTCGAGGGCA	NA	False	NA	NA	False	NA	NA	NA	124692194	124692465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124692200_124692500
transcript_114478.known	chr6	+	593	2	FSM	ENSMUSG00000004264.18	ENSMUST00000150847.8	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	2682	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCCAGTACCCCATCAT	NA	False	NA	NA	False	NA	NA	NA	124689298	124690031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124689527_124689666
transcript_114479.known	chr6	-	2219	16	FSM	ENSMUSG00000004266.16	ENSMUST00000112484.10	2219	16	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_10	22.1017847444248	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8730	False	NA	0	True	AATAAA	-28	NA	124710117	124697669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
transcript_114480.known	chr6	-	2226	16	FSM	ENSMUSG00000004266.16	ENSMUST00000171549.9	2226	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_15	37.1732281203676	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8920	False	NA	0	True	AATAAA	-28	NA	124715677	124697669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
transcript_114485.nic	chr6	-	2371	15	NIC	ENSMUSG00000004266.16	novel	2219	16	NA	NA	19	0	intron_retention	FALSE	canonical	3	99	junction_9	22.8728740508695	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8749	False	NA	0	True	AATAAA	-28	NA	124710098	124697669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
transcript_114486.known	chr6	-	2308	15	FSM	ENSMUSG00000004266.16	ENSMUST00000004377.15	2308	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_14	38.4405185889545	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	9009	False	NA	0	True	AATAAA	-28	NA	124715588	124697669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
transcript_114491.known	chr6	-	371	2	FSM	ENSMUSG00000004266.16	ENSMUST00000172770.2	371	2	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACATTTCTTCCCTTCT	8774	False	NA	NA	False	NA	NA	NA	124710073	124709617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124709824_124709908
transcript_114492.known	chr6	-	4433	10	FSM	ENSMUSG00000004263.16	ENSMUST00000088357.12	4433	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	22.6083126851416	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTGTGACGTGTTTTT	9215	False	NA	0	True	AAAACA	-21	NA	124733487	124719506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722601_124722825_124722982_124724953_124726198_124726313_124726424_124726563_124726709_124726885_124733258
transcript_114494.known	chr6	-	863	3	FSM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	0	0	0	0	multi-exon	FALSE	canonical	3	807	junction_1	71.5	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTCAGTCATTTGT	8943	False	NA	NA	False	AATAAA	-17	NA	124718337	124716145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124716377_124717481_124717659_124717882
transcript_114495.known	chr6	-	1656	2	FSM	ENSMUSG00000072772.4	ENSMUST00000140423.2	1656	2	0	0	0	0	multi-exon	FALSE	canonical	3	950	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGTGTCAGTCATT	9252	False	NA	NA	False	AATAAA	-14	NA	124718028	124716148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124717659_124717882
transcript_114496.known	chr6	-	2795	12	FSM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_11	8.77449346328266	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGGCTGAACTAAGGAT	9866	False	NA	-3	True	NA	NA	NA	124746636	124737017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
transcript_11450.known	chr10	-	1222	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105348.8	1222	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	422.225617676406	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTGAAAGCAGATGAGC	NA	False	NA	NA	False	NA	NA	NA	80235256	80228672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231120_80231269_80231430_80235051
transcript_114511.known	chr6	-	2491	10	FSM	ENSMUSG00000004267.17	ENSMUST00000125436.8	2491	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	8.26565107262102	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	8715	False	NA	-6	True	ATTAAA	-17	NA	124745300	124737327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124738326_124738610_124738670_124739615_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200
transcript_114513.known	chr6	-	1601	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	1352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAACCTCTTTGTCCCAG	NA	False	NA	-23	True	AATACA	-16	NA	124791259	124787554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
transcript_114522.known	chr6	+	1213	3	FSM	ENSMUSG00000038451.14	ENSMUST00000047760.10	1213	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785623	124787582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124785743_124786189_124786933_124787231
transcript_114523.known	chr6	+	882	3	FSM	ENSMUSG00000038451.14	ENSMUST00000143040.8	882	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	13	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGTCAAATATCCACTCT	NA	False	NA	NA	False	NA	NA	NA	124785847	124787299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124785919_124786189_124786933_124787231
transcript_114526.known	chr6	+	1219	3	FSM	ENSMUSG00000038451.14	ENSMUST00000052727.5	1219	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	6.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785868	124787582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124785994_124786189_124786933_124787231
transcript_11453.nic	chr10	-	1746	6	NIC	ENSMUSG00000035478.15	novel	1662	7	NA	NA	-8	0	intron_retention	FALSE	canonical	3	303	junction_5	389.715485963799	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235392	80228372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
transcript_114536.known	chr6	-	3213	20	FSM	ENSMUSG00000038429.11	ENSMUST00000047510.10	3213	20	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	195.368477767687	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCAGTTCTTTGGGG	7856	False	NA	-8	True	AATAAA	-15	NA	124806447	124791981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
transcript_11454.nic	chr10	-	1650	6	NIC	ENSMUSG00000035478.15	novel	1566	7	NA	NA	-8	0	intron_retention	FALSE	canonical	3	918	junction_5	149.282818837266	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235392	80228372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
transcript_114540.nic	chr6	-	3064	20	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_16	192.331489002841	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTACGGGGGCTGAC	7863	False	NA	-27	True	AATACA	-9	NA	124806440	124792000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801611_124801814_124801949_124802074_124802142_124803261_124803388_124806247
transcript_114542.known	chr6	-	3076	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	1562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTACGGGGGCTGAC	7905	False	NA	-27	True	AATACA	-9	NA	124806398	124792000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
transcript_114585.nic	chr6	+	1105	7	NIC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	-27	-254	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	434.945207277116	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1317	False	NA	29	True	ATTAAA	-16	NA	124807152	124810241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_124807237_124807326_124807381_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
transcript_114586.known	chr6	+	1976	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTTGTCTTGCCT	815	False	NA	39	True	NA	NA	NA	124806650	124810664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
transcript_114595.known	chr6	+	1917	5	FSM	ENSMUSG00000023505.14	ENSMUST00000134637.8	1917	5	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	91.4969261778777	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTCATGATCTTTCCC	1362	False	NA	NA	False	CATAAA	-25	NA	124807197	124810495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124809403_124809528_124809633_124809947
transcript_114599.known	chr6	-	2850	15	FSM	ENSMUSG00000023191.10	ENSMUST00000023958.10	2850	15	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_14	4.42396073348629	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGGTCTGCTCTATCCC	5483	False	NA	NA	False	AATAAA	-27	NA	124834715	124818051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124818803_124819034_124819176_124821978_124822055_124822164_124822283_124822470_124822622_124822904_124823007_124827588_124827714_124827880_124827949_124828041_124828095_124830013_124830104_124831273_124831411_124831810_124831943_124832043_124832240_124832906_124833060_124834158
transcript_1146.known	chr1	+	969	6	FSM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_1	191.904559612324	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGTAGTCAGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	37929557	37937616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37929666_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
transcript_114603.known	chr6	-	2676	5	FSM	ENSMUSG00000038390.12	ENSMUST00000046893.10	2676	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	3.56195171219375	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGATGTTCAGCGTTTGC	NA	False	NA	0	True	ATTAAA	-21	NA	124840880	124835406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124836184_124836454_124836613_124836985_124837176_124837781_124839086_124840633
transcript_114604.known	chr6	-	2855	6	FSM	ENSMUSG00000038390.12	ENSMUST00000204667.2	2855	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	4.56070170039655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCTTGATGTTCAGCGT	NA	False	NA	-4	True	ATTAAA	-17	NA	124840946	124835410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124836184_124836454_124836613_124836985_124837176_124837781_124839086_124839871_124839989_124840633
transcript_114610.known	chr6	-	2001	8	FSM	ENSMUSG00000030124.3	ENSMUST00000032217.2	2001	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	4.83186700722507	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAAGCTGGAGTCTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	124888668	124881323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124881564_124881800_124881932_124882218_124882456_124885339_124885616_124886188_124886453_124887066_124887360_124887726_124887875_124888256
transcript_114613.known	chr6	-	1149	5	FSM	ENSMUSG00000030122.13	ENSMUST00000032216.7	1149	5	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_3	90.7837402842601	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124894909	124890643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124894522
transcript_114614.known	chr6	-	744	5	FSM	ENSMUSG00000030122.13	ENSMUST00000204671.3	744	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	276.631975736718	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTGGGGCCAAGCCC	8034	False	NA	-44	True	NA	NA	NA	124897066	124890726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124897001
transcript_114621.known	chr6	+	1451	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_8	1260.71298651795	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGATTCTGGCTGTACT	NA	False	NA	26	True	AATAAA	-16	NA	124908438	124913107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
transcript_114622.known	chr6	+	1475	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	1745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATTCTGGCTGTACTT	NA	False	NA	27	True	AATAAA	-17	NA	124908394	124913108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
transcript_114627.nic	chr6	+	1752	8	ISM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-101	1	-55	0	intron_retention	FALSE	canonical	3	3577	junction_4	212.973122765311	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGATTCTGGCTGTACT	NA	False	NA	26	True	AATAAA	-16	NA	124908293	124913107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195
transcript_11464.known	chr10	-	605	3	FSM	ENSMUSG00000020163.13	ENSMUST00000141683.2	605	3	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	2065	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGGCTCCTTCCTCAT	NA	False	NA	-2	True	ATTAAA	-20	NA	80242629	80238831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80238990_80239969_80240121_80242333
transcript_11465.known	chr10	-	445	3	FSM	ENSMUSG00000020163.13	ENSMUST00000020372.6	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	4161	junction_1	104.5	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTCCTTCCTCATC	NA	False	NA	-1	True	ATTAAA	-21	NA	80242664	80238830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80238990_80239969_80240121_80242529
transcript_114683.known	chr6	-	1817	8	FSM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_7	625.057254520393	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942411	124935778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942247
transcript_114690.nic	chr6	-	1854	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	583.751379843669	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942382	124935778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
transcript_114697.known	chr6	-	795	7	FSM	ENSMUSG00000030127.16	ENSMUST00000129976.8	795	7	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_6	612.067443633098	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCAGCCACCTCCCAGG	NA	False	NA	NA	False	ATTAAA	-18	NA	124942253	124936869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
transcript_114712.known	chr6	-	1328	8	FSM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	503.213915644191	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	False	NA	-16	True	ATTAAA	-13	NA	124942501	124935375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
transcript_114713.known	chr6	+	2250	6	FSM	ENSMUSG00000030329.12	ENSMUST00000032479.11	2250	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	10.6094297678999	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTGCCTGTTTTGCCT	8030	False	NA	16	True	AATAAA	-16	NA	124973656	124980059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124973903_124975880_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
transcript_114715.known	chr6	+	2396	5	FSM	ENSMUSG00000030329.12	ENSMUST00000162000.4	2396	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	11.842719282327	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTGCCTGTTTTGCCT	8198	False	NA	16	True	AATAAA	-16	NA	124973824	124980059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_124973903_124975880_124975941_124976197_124976704_124977616_124977699_124978389
transcript_114723.known	chr6	+	1629	8	FSM	ENSMUSG00000030330.16	ENSMUST00000032480.14	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	19.3527933964298	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7107	False	NA	6	True	AATAAA	-16	NA	125016798	125026227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
transcript_114726.known	chr6	+	1487	8	FSM	ENSMUSG00000030330.16	ENSMUST00000112417.9	1487	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.5119036099053	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7132	False	NA	7	True	AATAAA	-17	NA	125016823	125026228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024864_125024904_125025138_125025201_125025330
transcript_114730.nic	chr6	+	1699	7	ISM	ENSMUSG00000108037.3	ENSMUST00000140883.7	3181	10	-136	2497	-107	-2497	5prime_fragment	FALSE	canonical	3	91	junction_4	20.4857674170793	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	6980	False	NA	8	True	AATAAA	-15	NA	125016671	125025965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024904_125025138_125025201_125025330
transcript_114731.nic	chr6	+	1834	7	ISM	ENSMUSG00000108037.3	ENSMUST00000140883.7	3181	10	-9	2235	-9	-2235	5prime_fragment	FALSE	canonical	3	91	junction_4	20.4857674170793	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7107	False	NA	6	True	AATAAA	-16	NA	125016798	125026227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024904_125025138_125025201_125025330
transcript_114738.nic	chr6	+	2089	6	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	-20	0	intron_retention	FALSE	canonical	3	91	junction_4	22.3553125677097	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7087	False	NA	6	True	AATAAA	-16	NA	125016778	125026227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125025201_125025330
transcript_114740.known	chr6	+	584	4	FSM	ENSMUSG00000072770.10	ENSMUST00000032481.8	584	4	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	54.0514158515349	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATTTTGGAGAGTATT	NA	False	NA	NA	False	NA	NA	NA	125026929	125028510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028323
transcript_114741.known	chr6	+	1883	10	FSM	ENSMUSG00000072770.10	ENSMUST00000088294.12	1883	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	45.7669890199324	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACGTGCTCTGCTTAGT	NA	False	NA	NA	False	AATAAA	-14	NA	125026921	125040230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452_125030916_125031635_125031769_125037772_125037953_125038048_125038217_125039398_125039483_125039898
transcript_114744.known	chr6	+	1393	2	FSM	ENSMUSG00000067714.14	ENSMUST00000088292.7	1393	2	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGACGCAGTCTAAGTGAA	5038	False	NA	NA	False	NA	NA	NA	125044882	125059435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125044940_125058099
transcript_114746.known	chr6	+	6537	39	FSM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_3	116.234542355382	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTGGTTCTGTGTGGG	1789	False	NA	14	True	AATAAA	-18	NA	125073124	125107554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
transcript_114749.known	chr6	+	6697	39	FSM	ENSMUSG00000063870.13	ENSMUST00000056889.15	6697	39	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_8	108.606041087339	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTGGTTCTGTGTGGG	1608	False	NA	14	True	AATAAA	-18	NA	125072943	125107554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
transcript_114751.known	chr6	+	6652	39	FSM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_8	111.644804298587	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAGTGATCTGGTTCTG	1608	False	NA	8	True	AATAAA	-12	NA	125072943	125107548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079433_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
transcript_114778.nic	chr6	+	1427	8	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	-187	28294	-6	1777	5prime_fragment	FALSE	canonical	3	54	junction_3	59.4004054133076	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTTTCTTTTCTGTAC	1602	False	NA	NA	False	AAAAAG	-10	NA	125072937	125079260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125
transcript_114779.nic	chr6	+	1348	8	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	52	28288	52	1777	5prime_fragment	FALSE	canonical	3	200	junction_3	15.8384703446117	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTTTCTTTTCTGTAC	1660	False	NA	NA	False	AAAAAG	-10	NA	125072995	125079260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125
transcript_114781.nic	chr6	+	718	4	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	-187	29683	-6	388	5prime_fragment	FALSE	canonical	3	54	junction_3	70.258253765819	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCTCGGACCTAAGAAAG	1602	False	NA	NA	False	NA	NA	NA	125072937	125077871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740
transcript_114782.nic	chr6	+	697	4	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	-6	29677	-6	388	5prime_fragment	FALSE	canonical	3	200	junction_3	2.16024689946929	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCTCGGACCTAAGAAAG	1602	False	NA	NA	False	NA	NA	NA	125072937	125077871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761
transcript_114784.nic	chr6	+	518	3	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	-6	30065	-6	0	5prime_fragment	FALSE	canonical	3	201	junction_1	2	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGAAGAAAAAGCCTAA	1602	False	NA	NA	False	NA	NA	NA	125072937	125077483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_125073224_125074049_125074229_125077430
transcript_114801.known	chr6	+	2597	16	FSM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	206.283558885983	2195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5437	False	NA	25	True	AATATA	-17	NA	125108871	125121716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
transcript_114808.nnic	chr6	+	2679	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-56	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	267.552229584348	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5381	False	NA	25	True	AATATA	-17	NA	125108815	125121716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_125108993_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
transcript_114851.known	chr6	+	2283	10	FSM	ENSMUSG00000038271.18	ENSMUST00000148835.3	2283	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	19.6211022707948	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTGATTGAGCCTGCT	276	False	NA	5	True	AATAAA	-12	NA	125122763	125138739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125128760_125128767_125129576_125129735_125130004_125130126_125130369_125130466_125136024_125136156_125137495
transcript_114853.nnic	chr6	+	2946	10	NNC	ENSMUSG00000038271.18	novel	2283	10	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	16.5058912041866	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGAGCCTGCTTCACCT	8208	False	NA	11	True	AATAAA	-18	NA	125122184	125138745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_125122993_125126061_125126146_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130126_125130369_125130466_125136024_125136156_125137495
transcript_114854.known	chr6	+	2840	9	FSM	ENSMUSG00000038271.18	ENSMUST00000119527.8	2840	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	15.028618532653	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGAGCCTGCTTCACCT	8227	False	NA	11	True	AATAAA	-18	NA	125122203	125138745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130126_125130372_125130466_125136024_125136156_125137495
transcript_114856.nnic	chr6	+	3190	9	NNC	ENSMUSG00000038271.18	novel	2840	9	NA	NA	-19	0	intron_retention	FALSE	canonical	2	8	junction_1	17.2898091371767	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGAGCCTGCTTCACCT	8208	False	NA	11	True	AATAAA	-18	NA	125122184	125138745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_125122993_125126061_125126146_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130466_125136024_125136156_125137495
transcript_114858.known	chr6	+	3056	8	FSM	ENSMUSG00000038271.18	ENSMUST00000141230.8	3056	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	12.7711409363583	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTGATTGAGCCTGCT	8252	False	NA	5	True	AATAAA	-12	NA	125122228	125138739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130466_125136024_125136156_125137495
transcript_114863.known	chr6	-	1420	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	6089	junction_1	1931.60920967179	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142736	125138816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
transcript_114865.nic	chr6	-	3643	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	306	0	intron_retention	FALSE	canonical	3	6089	junction_1	2110.23520963896	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125143124	125138815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125142275_125142514
transcript_114874.known	chr6	-	769	2	FSM	ENSMUSG00000057666.19	ENSMUST00000144588.2	769	2	0	0	0	0	multi-exon	FALSE	canonical	3	8124	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATTCTCTGAAAATCAAA	NA	False	NA	NA	False	NA	NA	NA	125142568	125141559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_125142275_125142514
transcript_114883.nic	chr6	-	4590	32	NIC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	45	0	combination_of_known_junctions	TRUE	canonical	3	50	junction_31	121.390529984967	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3538	False	NA	-9	True	AATAAA	-20	NA	125168521	125144969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168356
transcript_114884.known	chr6	-	4629	32	FSM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_21	78.9640126675822	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3395	False	NA	-9	True	AATAAA	-20	NA	125168664	125144969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
transcript_114909.nic	chr6	-	3121	17	ISM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	-420	7842	-420	0	5prime_fragment	FALSE	canonical	3	436	junction_6	45.8580946371521	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAACA	2975	False	NA	NA	False	TTTAAA	-38	NA	125169084	125152811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
transcript_114918.known	chr6	+	855	3	FSM	ENSMUSG00000030335.7	ENSMUST00000136804.2	855	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	333	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125168763	125170521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125169172_125169478_125169590_125170185
transcript_114919.known	chr6	+	3427	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_1	10	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTGGGTTTTCTTCT	NA	False	NA	NA	False	ACTAAA	-15	NA	125169127	125173232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125169397_125169478_125169590_125170185
transcript_114920.known	chr6	-	2352	7	FSM	ENSMUSG00000038213.8	ENSMUST00000043422.8	2352	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	4.61880215351701	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCACTTTCTTCTCTCTC	8513	False	NA	NA	False	AATAAA	-17	NA	125208823	125200895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_125201673_125201826_125201914_125203453_125203760_125205025_125205365_125207107_125207381_125207517_125207761_125208496
transcript_114921.known	chr6	+	3011	4	FSM	ENSMUSG00000030337.17	ENSMUST00000100942.9	3011	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACATTGACTTGATTGTT	350	False	NA	NA	False	AATACA	-11	NA	125192543	125199126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125192691_125195536_125195664_125195873_125196033_125196548
transcript_114922.known	chr6	-	1509	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	507	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCATTTCCTCTCTAGTGT	3461	False	NA	-8	True	AATAAA	-28	NA	125263005	125255236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
transcript_114925.known	chr6	-	2107	10	FSM	ENSMUSG00000030339.8	ENSMUST00000032489.8	2107	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	2.62936879248872	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGGGTTTTATGTGG	NA	False	NA	0	True	AATAAA	-21	NA	125290848	125283533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_125284435_125284892_125285110_125286156_125286183_125286421_125286530_125289005_125289086_125289232_125289330_125289714_125289874_125289956_125290083_125290352_125290450_125290552
transcript_114927.known	chr6	+	3499	12	FSM	ENSMUSG00000030340.17	ENSMUST00000081440.14	3499	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	2.74539434009845	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCTGCAGTGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	125298302	125321906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125299338_125307873_125308148_125309055_125309247_125314759_125314864_125315198_125315363_125315799_125315899_125316068_125316187_125319564_125319644_125319750_125319809_125319983_125320040_125320184_125320261_125320661
transcript_114930.known	chr6	+	2156	10	FSM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	4.54062594260057	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTGACCCTGGAAAGAGTG	3776	False	NA	15	True	AATACA	-20	NA	125326685	125339447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125327026_125333787_125333942_125334275_125334405_125334683_125334834_125335016_125335096_125337459_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
transcript_114934.known	chr6	-	3299	17	FSM	ENSMUSG00000038167.7	ENSMUST00000042647.7	3299	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	3.59198326137525	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACATGGTTGTTTGGTG	NA	False	NA	NA	False	TATAAA	-8	NA	125357756	125339622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_125339831_125340004_125340683_125341546_125341699_125347343_125347460_125347544_125347678_125349020_125349141_125349440_125349579_125349775_125349926_125350069_125350181_125351491_125351642_125351936_125351988_125352205_125352302_125352686_125352852_125354344_125354501_125355664_125355874_125356717_125356940_125357312
transcript_114939.known	chr6	-	1228	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	0	0	0	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	3564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9966	False	NA	-10	True	AATAAA	-15	NA	125471754	125437228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
transcript_114949.known	chr6	+	782	4	FSM	ENSMUSG00000101191.7	ENSMUST00000187542.7	782	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTCAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	125458325	125461641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_125458438_125459526_125459666_125460403_125460533_125461239
transcript_114955.known	chr6	-	919	3	FSM	ENSMUSG00000000399.11	ENSMUST00000200890.2	919	3	0	0	0	0	multi-exon	FALSE	canonical	3	1175	junction_2	32	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAGTTCCAGGACAGCC	NA	False	NA	NA	False	NA	NA	NA	126826099	126820693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_126821369_126821753_126821925_126826026
transcript_11496.known	chr10	-	2920	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105343.8	2920	19	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_12	245.119472004073	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACCCAGTGTTGATCT	NA	False	NA	-33	True	ATTAAA	-10	NA	80269481	80245380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
transcript_114961.known	chr6	-	2233	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112220.8	2233	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	57.8721651573535	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGGAGGGACTTGGGTT	5265	False	NA	NA	False	TATAAA	-11	NA	126916550	126900012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904651_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_114962.known	chr6	-	1871	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7748334184751	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5265	False	NA	-5	True	AATAAA	-21	NA	126916550	126900377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_114964.nnic	chr6	-	1991	9	NNC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	85.1909619619358	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5197	False	NA	-5	True	AATAAA	-21	NA	126916618	126900377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_126901304_126901880_126902083_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_114969.nic	chr6	-	2324	8	NIC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	195	junction_2	26.1635359277927	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5262	False	NA	-5	True	AATAAA	-21	NA	126916553	126900377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_114982.nic	chr6	-	793	7	ISM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	-17	2963	-17	0	5prime_fragment	FALSE	canonical	3	112	junction_2	53.4820842276489	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATGTGAGGCATCAGG	5248	False	NA	NA	False	AAGAAA	-34	NA	126916567	126903340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_114988.known	chr6	+	2501	14	FSM	ENSMUSG00000030347.7	ENSMUST00000032497.7	2501	14	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_10	14.682034265643	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCGCCATCTCACCTTC	NA	False	NA	NA	False	NA	NA	NA	126916928	126952930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_126916990_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
transcript_114996.known	chr6	-	3651	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGGTCTGTTCAGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	127086513	127062078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
transcript_115.known	SIRV3	+	436	3	FSM	SIRV3A	SIRV305	436	3	0	0	0	0	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4003	6718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_+_4081_4568_4780_6570
transcript_1150.known	chr1	+	662	5	FSM	ENSMUSG00000026087.12	ENSMUST00000193673.6	662	5	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	367.71796257458	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTCGTTCAGTTCTCTC	NA	False	NA	46	True	NA	NA	NA	37929612	37937445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_37929666_37933019_37933097_37934410_37934492_37936768_37936916_37937141
transcript_115003.known	chr6	-	6330	5	FSM	ENSMUSG00000000184.13	ENSMUST00000000188.12	6330	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6393596310755	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTGTCACTAACTT	2272	False	NA	2	True	AATAAA	-18	NA	127128023	127102124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_127107451_127116065_127116215_127122985_127123146_127125626_127125843_127127544
transcript_115004.known	chr6	+	3746	9	FSM	ENSMUSG00000037997.13	ENSMUST00000039680.7	3746	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	10.4403065089106	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTGCTTCTGGTTTCT	NA	False	NA	33	True	ATTAAA	-38	NA	127430685	127471224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
transcript_115005.nic	chr6	+	3713	8	NIC	ENSMUSG00000037997.13	novel	3746	9	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	15.8513502933488	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCTGCCTGTGTGTGCT	NA	False	NA	12	True	ATTAAA	-17	NA	127430576	127471203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_127430786_127444994_127445116_127447664_127447794_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
transcript_115007.known	chr6	+	1725	7	FSM	ENSMUSG00000037997.13	ENSMUST00000112193.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	10.0443461155462	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGATTTCTGGTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	127430637	127456018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961
transcript_115012.known	chr6	-	2724	10	FSM	ENSMUSG00000030350.9	ENSMUST00000032500.9	2724	10	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	3.18948890986829	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATGAGTACCTCTTTCTT	NA	False	NA	2	True	AATAAA	-17	NA	127746435	127665973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_127666872_127667572_127667695_127674647_127674799_127680839_127680956_127688104_127688193_127688744_127688888_127703487_127703552_127706372_127706529_127709597_127709784_127745635
transcript_115024.known	chr6	-	1405	9	FSM	ENSMUSG00000030352.16	ENSMUST00000032503.12	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	10.9971587239614	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTAGCTCTCTGATTTAT	6166	False	NA	NA	False	NA	NA	NA	128120523	127940869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128060344_128060445_128120476
transcript_115027.known	chr6	-	3819	8	FSM	ENSMUSG00000030352.16	ENSMUST00000112173.8	3819	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	35.3305094494713	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTGTTATTTAGTGGT	6163	False	NA	-2	True	AATAAA	-26	NA	128120526	127938358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128120476
transcript_11504.known	chr10	-	2826	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105340.8	2826	19	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	298.052904616978	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGTCTCATGTCTGTT	NA	False	NA	29	True	NA	NA	NA	80269469	80245459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80246109_80246231_80246456_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
transcript_115049.known	chr6	-	3076	12	FSM	ENSMUSG00000030353.16	ENSMUST00000006311.13	3076	12	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_4	17.0405447474327	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGTGAGAACTTCAACTC	1357	False	NA	-7	True	NA	NA	NA	128277776	128204105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128277257
transcript_115057.nnic	chr6	-	2358	11	NNC	ENSMUSG00000030353.16	novel	1718	12	NA	NA	-30	1	intron_retention	FALSE	non_canonical	0	0	junction_1	33.2180673730426	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATCTGCGCTCGTGTGAT	1402	False	NA	-3	True	NA	NA	NA	128277731	128201249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_128202043_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830_128248086_128277257
transcript_115058.known	chr6	-	1909	11	FSM	ENSMUSG00000030353.16	ENSMUST00000112157.4	1909	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_7	24.4991836598692	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGGAGCTAGTTTGGC	1357	False	NA	-5	True	AATAAA	-19	NA	128277776	128205143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830_128248086_128277257
transcript_115063.nnic	chr6	-	2076	9	NNC	ENSMUSG00000030353.16	novel	1718	12	NA	NA	-20	1	intron_retention	FALSE	non_canonical	0	0	junction_1	32.302283201037	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATCTGCGCTCGTGTGAT	1327	False	NA	-3	True	NA	NA	NA	128277806	128201249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_128202025_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128277257
transcript_115065.nnic	chr6	-	1926	8	NNC	ENSMUSG00000030353.16	novel	1718	12	NA	NA	1	1	intron_retention	FALSE	non_canonical	0	0	junction_1	39.0070637245123	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATCTGCGCTCGTGTGAT	1348	False	NA	-3	True	NA	NA	NA	128277785	128201249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_128202025_128220332_128220473_128223283_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830_128248086_128277257
transcript_115070.known	chr6	+	567	1	FSM	ENSMUSG00000053173.13	ENSMUST00000118863.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	266	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	NA	False	NA	NA	False	NA	NA	NA	128290319	128290886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_128290300_128290900
transcript_115073.nnic	chr6	-	3345	12	NNC	ENSMUSG00000001521.13	novel	3374	11	NA	NA	-27	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	12.2136625841313	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTCGCTTTCCCAGAATA	7464	False	NA	-22	True	AATAAA	-16	NA	128332841	128298125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_-_128299895_128299948_128300176_128300960_128301133_128301942_128302042_128302839_128302955_128303734_128303848_128304502_128304701_128304918_128305041_128310795_128310973_128311400_128311561_128314696_128314749_128332700
transcript_115075.known	chr6	-	3374	11	FSM	ENSMUSG00000001521.13	ENSMUST00000001562.9	3374	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	4.7169905660283	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGCTTTCCCAGAATACC	7491	False	NA	-20	True	AATAAA	-18	NA	128332814	128298123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128300176_128300960_128301133_128301942_128302042_128302839_128302955_128303734_128303848_128304502_128304701_128304918_128305041_128310795_128310973_128311400_128311561_128314696_128314749_128332700
transcript_115076.known	chr6	-	1053	2	FSM	ENSMUSG00000001521.13	ENSMUST00000157005.3	1053	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTGTTGTTTAATAAG	7517	False	NA	NA	False	CATAAA	-19	NA	128332788	128319203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128320169_128332700
transcript_115079.known	chr6	-	2015	4	FSM	ENSMUSG00000048668.17	ENSMUST00000112152.8	2015	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	145.265274584121	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCCTGTCTCAGTGGTC	530	False	NA	NA	False	CATAAA	-34	NA	128339775	128333962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128335157_128336068_128336318_128339020_128339148_128339330
transcript_115080.nic	chr6	-	1280	4	NIC	ENSMUSG00000048668.17	novel	2015	4	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_2	133.417473451652	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCGTGCCCATCTA	434	False	NA	-7	True	AATAAA	-41	NA	128339871	128334322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_128335157_128336068_128336318_128339020_128339148_128339801
transcript_115081.known	chr6	-	1584	3	FSM	ENSMUSG00000048668.17	ENSMUST00000057421.15	1584	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	149.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCGTGCCCATCTA	474	False	NA	-7	True	AATAAA	-41	NA	128339831	128334322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128335157_128336068_128336318_128339330
transcript_115083.known	chr6	-	1108	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	100.5	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	474	False	NA	-12	True	AATAAA	-36	NA	128339831	128334327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128335157_128336068_128336318_128339801
transcript_115089.known	chr6	-	2320	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401894	128386406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
transcript_115091.known	chr6	-	1394	11	FSM	ENSMUSG00000001518.13	ENSMUST00000203374.3	1394	11	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_10	80.3029264722027	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCAGAACTGGGTTCTC	NA	False	NA	NA	False	NA	NA	NA	128401832	128387174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128401680
transcript_115098.nic	chr6	-	2415	11	NIC	ENSMUSG00000001518.13	novel	2320	12	NA	NA	-22	-2	intron_retention	FALSE	canonical	3	237	junction_2	19.4216374180963	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCAGCTCTCCAATCTGG	NA	False	NA	-2	True	AATAAA	-22	NA	128401916	128386408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
transcript_115104.known	chr6	-	3191	10	FSM	ENSMUSG00000001518.13	ENSMUST00000142615.4	3191	10	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	20.4601389035025	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAGGCTCCATAGCAAG	NA	False	NA	-89	True	NA	NA	NA	128401881	128386495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
transcript_115110.known	chr6	+	4652	8	FSM	ENSMUSG00000001517.15	ENSMUST00000073316.13	4652	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_6	39.2423136890967	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAAGGGCTGGCAGTA	NA	False	NA	NA	False	NA	NA	NA	128339929	128353109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_128340081_128342620_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128348930_128348976_128349496_128349567_128349739
transcript_115117.nic	chr6	+	3702	7	NIC	ENSMUSG00000001517.15	novel	4652	8	NA	NA	-397	878	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	55.3132493671774	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGCGAGAGGTGGAGCCT	NA	False	NA	9	True	AATAAA	-23	NA	128339532	128351807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_128340081_128342620_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128349496_128349567_128349739
transcript_115118.nic	chr6	+	4567	7	NIC	ENSMUSG00000001517.15	novel	4652	8	NA	NA	-226	-266	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	55.3132493671774	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTACCTCGTACACAGCC	NA	False	NA	2	True	TATAAA	-15	NA	128339703	128352843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_128340081_128342620_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128349496_128349567_128349739
transcript_115127.known	chr6	-	2135	1	FSM	ENSMUSG00000001518.13	ENSMUST00000204467.2	2135	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAATAAATAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	128401881	128399746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128399700_128401900
transcript_115128.known	chr6	-	2296	2	FSM	ENSMUSG00000001518.13	ENSMUST00000133994.2	2296	2	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	128401893	128392592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128394676_128401680
transcript_115129.known	chr6	-	2217	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	0	0	0	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	4603	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9269	False	NA	-21	True	AATAAA	-16	NA	128415640	128407065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
transcript_115130.known	chr6	-	4681	36	FSM	ENSMUSG00000030359.15	ENSMUST00000112132.8	4681	36	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	19.0831905944815	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTTCCTTTTT	9646	False	NA	5	True	AATAAA	-20	NA	128503683	128460529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464843_128465063_128465868_128466111_128466644_128466823_128466981_128467057_128467485_128467643_128468127_128468219_128468458_128468636_128469119_128469204_128471390_128471443_128471670_128471793_128472155_128472283_128472862_128473092_128473541_128473717_128475921_128476010_128479138_128479304_128480435_128480586_128483698_128483842_128487307_128487372_128489118_128489347_128490698_128490861_128493035_128493146_128493778_128493894_128496354_128496479_128498063_128498149_128498978_128499148_128499702_128499724_128500739_128500793_128500932_128501087_128502077_128502262_128503541
transcript_115138.known	chr6	+	1820	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	5.71547606649408	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGGCCTCTTTCTTTTTC	NA	False	NA	34	True	AATAAA	-38	NA	129510122	129519309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
transcript_11514.known	chr10	-	2839	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105346.10	2839	19	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_2	257.439271275891	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTTTCTAGAATTTAT	NA	False	NA	-14	True	TATAAA	-14	NA	80269455	80245441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
transcript_115141.known	chr6	-	767	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	0	0	0	0	multi-exon	FALSE	canonical	2	356	junction_3	64.3059095262636	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAGAATAGGTATTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	131270207	131261350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
transcript_115144.known	chr6	-	1853	10	FSM	ENSMUSG00000030189.16	ENSMUST00000032309.13	1853	10	0	0	0	0	multi-exon	FALSE	canonical	3	2076	junction_5	391.631661162235	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTAACTAGTGTGTA	4971	False	NA	-9	True	AATAAA	-21	NA	131365401	131341817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131352936_131353144_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980
transcript_115146.known	chr6	-	1684	9	FSM	ENSMUSG00000030189.16	ENSMUST00000087865.4	1684	9	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_4	774.912807595151	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTAACTAGTGTGTA	4933	False	NA	-9	True	AATAAA	-21	NA	131365439	131341817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980
transcript_115147.known	chr6	+	2842	1	FSM	ENSMUSG00000072704.7	ENSMUST00000100864.7	2842	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCTCCTCATTAGTT	NA	False	NA	NA	False	AATAAA	-19	NA	133081871	133084713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_133081900_133084700
transcript_115148.known	chr6	+	5707	9	FSM	ENSMUSG00000030199.17	ENSMUST00000111963.8	5707	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	19.2418814048939	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGTCCCAAGTCTCTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	134012662	134247121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134013102_134043269_134043429_134114247_134114381_134199827_134199993_134210481_134210617_134225236_134225768_134238652_134238796_134239981_134240083_134243220
transcript_115151.known	chr6	+	5545	8	FSM	ENSMUSG00000030199.17	ENSMUST00000081028.13	5545	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	18.3358687176979	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAAGTCCCAAGTCTCT	NA	False	NA	NA	False	AATAAA	-19	NA	134012662	134247118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134013102_134114247_134114381_134199827_134199993_134210481_134210617_134225236_134225768_134238652_134238796_134239981_134240083_134243220
transcript_115153.known	chr6	+	1578	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	10	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAGTCTCTAACACTAT	NA	False	NA	5	True	GATAAA	-16	NA	134391390	134415078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
transcript_115158.known	chr6	+	1833	3	FSM	ENSMUSG00000030200.14	ENSMUST00000142612.2	1833	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	11	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATGCCAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	134391427	134405468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134391599_134400573_134401026_134404258
transcript_115163.known	chr6	-	9368	23	FSM	ENSMUSG00000030201.16	ENSMUST00000032322.15	9368	23	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_12	12.4923116851794	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGCTTTGTGTGATT	NA	False	NA	NA	False	AATAAA	-32	NA	134543876	134423438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_134428044_134430512_134430611_134431659_134431797_134433017_134433249_134434620_134434732_134436194_134436432_134439498_134439625_134441357_134441568_134444471_134444663_134445605_134445818_134447651_134447855_134456471_134456799_134457338_134457524_134461176_134461404_134462606_134462897_134463417_134463635_134483158_134483331_134484248_134484646_134488118_134488251_134490185_134490383_134497358_134497557_134518614_134519009_134543605
transcript_115170.known	chr6	-	941	1	FSM	ENSMUSG00000030201.16	ENSMUST00000203235.2	941	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTAAATAGTTTTGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	134518677	134517736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_134517700_134518700
transcript_115171.known	chr6	-	2376	4	FSM	ENSMUSG00000032718.5	ENSMUST00000047443.5	2376	4	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_1	3.09120616516523	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGCTGGATAGCTTTCAA	NA	False	NA	NA	False	AATAAA	-21	NA	134609451	134586169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_134587815_134594279_134594421_134598695_134599013_134609178
transcript_115173.known	chr6	+	1764	4	FSM	ENSMUSG00000042992.16	ENSMUST00000062755.10	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.37704215656966	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGATCTGATTCTAAT	NA	False	NA	31	True	ATTAAA	-32	NA	134617902	134688150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134618221_134621291_134621436_134662926_134663085_134687006
transcript_115174.known	chr6	+	485	3	FSM	ENSMUSG00000042992.16	ENSMUST00000203234.2	485	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	7	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGGTCCAGCATTGAGT	NA	False	NA	NA	False	NA	NA	NA	134618217	134663264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134618221_134621291_134621436_134662926
transcript_115178.known	chr6	-	5104	7	FSM	ENSMUSG00000030203.18	ENSMUST00000100857.10	5104	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_6	14.7309198626562	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTGAGACGTGGCT	NA	False	NA	-3	True	AATAAA	-24	NA	134769588	134692435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_134696015_134697456_134697581_134702798_134702959_134716774_134716939_134735581_134735721_134737808_134738398_134769239
transcript_115182.known	chr6	+	3629	5	FSM	ENSMUSG00000032652.14	ENSMUST00000046303.12	3629	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	2.06155281280883	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTCAGTTGCCTGTTTGAC	NA	False	NA	8	True	AATAAA	-19	NA	134807116	134835894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134807408_134826065_134826264_134828042_134828188_134829240_134829278_134832936
transcript_115184.known	chr6	+	612	4	FSM	ENSMUSG00000032652.14	ENSMUST00000111937.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.41629792788369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCCGGCGACCTTCAG	NA	False	NA	NA	False	NA	NA	NA	134807217	134833123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134807408_134826065_134826264_134829240_134829278_134832936
transcript_11519.known	chr10	-	2928	19	FSM	ENSMUSG00000020167.15	ENSMUST00000105342.8	2928	19	0	0	0	0	multi-exon	TRUE	canonical	3	359	junction_12	316.935193165206	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGACCCAGTGTTGATCT	NA	False	NA	-33	True	ATTAAA	-10	NA	80269477	80245380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80246109_80248660_80248897_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254653_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
transcript_115200.nic	chr6	-	1631	4	NIC	ENSMUSG00000032641.19	novel	2075	5	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134874866	134846055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
transcript_115203.known	chr6	-	1610	4	FSM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	18.9267594221045	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	-18	True	ACTAAA	-19	NA	134874821	134846070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_134847446_134864592_134864749_134874124_134874177_134874794
transcript_115204.known	chr6	-	498	4	FSM	ENSMUSG00000032641.19	ENSMUST00000203762.4	498	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	13.9124245031395	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCGCTTTGTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	134864731	134847211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592
transcript_115209.nic	chr6	-	1582	4	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134874886	134846124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
transcript_115211.known	chr6	-	1484	3	FSM	ENSMUSG00000032641.19	ENSMUST00000215088.2	1484	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	14.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134864748	134846124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_134847407_134863853_134863900_134864592
transcript_115213.nic	chr6	-	1588	2	ISM	ENSMUSG00000032641.19	ENSMUST00000165392.8	1643	4	9949	0	-34	0	3prime_fragment	FALSE	canonical	3	94	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134864829	134846055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_134847407_134864592
transcript_115214.nic	chr6	-	1611	2	ISM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	9993	0	-33	0	3prime_fragment	FALSE	canonical	3	36	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	-18	True	ACTAAA	-19	NA	134864828	134846070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_134847446_134864592
transcript_115216.nic	chr6	-	1627	2	ISM	ENSMUSG00000032641.19	ENSMUST00000111932.8	1711	5	9889	0	-142	0	3prime_fragment	FALSE	canonical	3	94	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134864937	134846124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_134847407_134864592
transcript_115218.known	chr6	+	2393	3	FSM	ENSMUSG00000003031.15	ENSMUST00000003115.9	2393	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGAGTGCAACTGTCC	NA	False	NA	13	True	AATAAA	-18	NA	134897363	134902476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134898358_134898918_134899047_134901205
transcript_115221.known	chr6	+	4552	2	FSM	ENSMUSG00000003031.15	ENSMUST00000067327.11	4552	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGAGTGCAACTGTCC	NA	False	NA	13	True	AATAAA	-18	NA	134897363	134902476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134898358_134898918
transcript_115227.known	chr6	+	474	3	FSM	ENSMUSG00000098318.8	ENSMUST00000183905.8	474	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTTTCTGGGCTCTGTT	7971	False	NA	26	True	NA	NA	NA	134906060	134928540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134906165_134920602_134920701_134928268
transcript_115228.known	chr6	+	5662	2	FSM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGCTCACCCCTTGTTT	7965	False	NA	NA	False	NA	NA	NA	134906054	134933761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134906224_134928268
transcript_115238.known	chr6	+	1764	12	FSM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	0	0	0	0	multi-exon	TRUE	canonical	3	485	junction_5	30.2182146373304	1027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGTGTGTGCACT	6574	False	NA	20	True	ATTAAA	-20	NA	134988574	135000739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
transcript_115254.known	chr6	+	4006	10	FSM	ENSMUSG00000030204.11	ENSMUST00000155277.8	4006	10	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_5	26.0389072612125	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGTCTGTGTGTG	6594	False	NA	16	True	ATTAAA	-16	NA	134988594	135000735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134998542_135000241
transcript_115261.nnic	chr6	+	2273	5	NNC	ENSMUSG00000046733.8	novel	2083	4	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	64.8127109446905	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATTTATTTATTT	NA	False	NA	32	True	AATAAA	-32	NA	135042626	135061707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_135042774_135043619_135043788_135055543_135056483_135060440_135060497_135060744
transcript_115262.known	chr6	+	2083	4	FSM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	5.71547606649408	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATTTATTTATTT	NA	False	NA	32	True	AATAAA	-32	NA	135042648	135061707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_135042774_135055543_135056483_135060440_135060497_135060744
transcript_115270.known	chr6	+	4221	13	FSM	ENSMUSG00000030207.16	ENSMUST00000111915.8	4221	13	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_6	10.7558123821495	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTGTCCTTTTCTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	135174974	135213240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_135175100_135186030_135186430_135188832_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
transcript_115280.known	chr6	-	1058	4	FSM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	18.8738502225228	577	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGACAGTTTTAAATTATT	NA	False	NA	-29	True	AATACA	-20	NA	135145213	135114519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_135115062_135129818_135130000_135132148_135132288_135145017
transcript_115283.known	chr6	+	1573	2	FSM	ENSMUSG00000094973.3	ENSMUST00000204530.2	1573	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAAGTAAATAGCA	NA	False	NA	NA	False	ATTAAA	-41	NA	136304536	136306981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_136304647_136305518
transcript_115288.nnic	chr6	+	6220	16	NNC	ENSMUSG00000030213.13	novel	8059	15	NA	NA	-32	740	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	57.4034455024745	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAATAGTGGCTCTAGA	7016	False	NA	NA	False	NA	NA	NA	136495767	136586057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_136495962_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471_136584359_136584426
transcript_115292.known	chr6	+	8059	15	FSM	ENSMUSG00000030213.13	ENSMUST00000032335.13	8059	15	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_2	25.3043716477963	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTCCAAGAGTTCTCAG	7048	False	NA	33	True	AATAAA	-33	NA	136495799	136587860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_136495962_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471
transcript_115293.nic	chr6	+	4443	15	NIC	ENSMUSG00000030213.13	novel	3018	9	NA	NA	-213	-1251	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	51.1530815797254	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTCCCTGAACAATTCAA	8637	False	NA	10	True	AATAAA	-18	NA	136509711	136584066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_136510052_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471
transcript_115295.nic	chr6	+	507	2	ISM	ENSMUSG00000030213.13	ENSMUST00000032335.13	8059	15	-32	50786	-32	-17	5prime_fragment	FALSE	canonical	3	179	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGATTTGAATAGTGA	7016	False	NA	NA	False	AAAACA	-3	NA	136495767	136537074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_136495962_136536761
transcript_1153.known	chr1	-	1444	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195032.6	1444	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	367.038400579558	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCGTCTGTCTGTCTGT	NA	False	NA	NA	False	TTTAAA	-2	NA	38036697	38026723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38035973
transcript_115301.known	chr6	-	2010	11	FSM	ENSMUSG00000030214.8	ENSMUST00000032336.7	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	4.98497743224581	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGTCCTGCGTTTAGC	NA	False	NA	0	True	AATAAA	-17	NA	136638926	136589067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_136589347_136589734_136589842_136590789_136590976_136593924_136594066_136594199_136594401_136611428_136611574_136612489_136612631_136617114_136617254_136618128_136618213_136628728_136628949_136638559
transcript_115302.known	chr6	-	2058	9	FSM	ENSMUSG00000030214.8	ENSMUST00000137139.2	2058	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_8	3.42782730020052	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAGAAAAAACAAGAAC	NA	False	NA	NA	False	NA	NA	NA	136638871	136590300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_136590976_136593924_136594066_136594199_136594401_136611428_136611574_136612489_136612631_136617114_136617254_136618128_136618213_136628728_136628949_136638559
transcript_115304.known	chr6	+	1831	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGACAGTGTTTGATT	NA	False	NA	NA	False	AATAAA	-19	NA	136785241	136787072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_136785200_136787100
transcript_115312.known	chr6	-	2739	12	FSM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_11	207.479880534104	1267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTGTTTGTGTAATG	2832	False	NA	-1	True	AATAAA	-19	NA	136805231	136790651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
transcript_115323.nic	chr6	-	1214	9	ISM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	13	4323	13	-801	5prime_fragment	FALSE	canonical	3	1089	junction_8	224.528812182312	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAGGAGCTGACTCCTC	2845	False	NA	15	True	AAGAAA	-3	NA	136805218	136794974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
transcript_115331.nic	chr6	-	322	3	ISM	ENSMUSG00000030216.13	ENSMUST00000151333.2	2339	7	-57	5788	33	0	5prime_fragment	FALSE	canonical	3	1089	junction_2	347	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACGAATTTAGAAACATTC	2865	False	NA	6	True	AAAAAG	-14	NA	136805198	136802513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_136802546_136802998_136803108_136805017
transcript_115332.nic	chr6	-	295	2	ISM	ENSMUSG00000030216.13	ENSMUST00000141598.3	779	3	-65	1641	33	-480	5prime_fragment	FALSE	canonical	3	1089	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACGGAAGGAAGAAGTAGAA	2865	False	NA	NA	False	NA	NA	NA	136805198	136802993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_136803108_136805017
transcript_115333.known	chr6	-	1193	6	FSM	ENSMUSG00000030220.14	ENSMUST00000032344.12	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	3.18747549010185	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGAGTTGTCTTATGC	5571	False	NA	NA	False	AATAAA	-20	NA	136918754	136900652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918648
transcript_115334.known	chr6	-	1153	6	FSM	ENSMUSG00000030220.14	ENSMUST00000111892.8	1153	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	4.60434577328853	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGAGTTGTCTTATGC	5824	False	NA	NA	False	AATAAA	-20	NA	136918501	136900652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918435
transcript_115335.known	chr6	-	2262	5	FSM	ENSMUSG00000030222.14	ENSMUST00000117919.8	2262	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	7.44983221287567	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTGTTGGAATTCTTT	NA	False	NA	-12	True	AATAAA	-14	NA	137146730	137031828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_137033539_137034810_137034885_137043996_137044054_137141932_137142101_137146477
transcript_115337.known	chr6	-	890	4	FSM	ENSMUSG00000030222.14	ENSMUST00000119610.4	890	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	25.7725090401036	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTGGCTCTCCTGCTG	NA	False	NA	NA	False	NA	NA	NA	137146683	137033096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_137033539_137034810_137034885_137141932_137142101_137146477
transcript_115343.known	chr6	-	4567	22	FSM	ENSMUSG00000015766.15	ENSMUST00000058210.13	4567	22	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_13	15.9268452335348	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGGTTGAAAATTAGCAT	3998	False	NA	NA	False	AATAAA	-18	NA	137626283	137454242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137568415_137568491_137626049
transcript_115354.known	chr6	-	3560	21	FSM	ENSMUSG00000015766.15	ENSMUST00000111878.8	3560	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	34.6389953664941	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGCTTATTGTGTAAAA	3998	False	NA	-83	True	NA	NA	NA	137626283	137455174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137626049
transcript_115355.nic	chr6	-	4043	21	NIC	ENSMUSG00000015766.15	novel	4567	22	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_19	31.4249502784014	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGTTTGCTTGGTAGAA	4019	False	NA	0	True	AATAAA	-23	NA	137626262	137454665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137568415_137568491_137626049
transcript_115360.nic	chr6	-	3068	21	NIC	ENSMUSG00000015766.15	novel	4567	22	NA	NA	-2	-489	combination_of_known_junctions	FALSE	canonical	3	16	junction_19	31.4249502784014	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTAAAAGAAAATGTAAT	3996	False	NA	NA	False	AATAAA	-21	NA	137626285	137455663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137568415_137568491_137626049
transcript_115369.known	chr6	+	2650	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	0	0	0	0	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	944	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGCTTGGATTCCTGAAGT	NA	False	NA	23	True	AATAAA	-26	NA	137712075	137728930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
transcript_115380.known	chr6	+	1729	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTTGTTTATTTTC	NA	False	NA	20	True	AATACA	-20	NA	137731555	137814892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
transcript_115386.known	chr6	+	1167	4	FSM	ENSMUSG00000008540.12	ENSMUST00000008684.11	1167	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTTTTCTCTTT	2214	False	NA	NA	False	ATTAAA	-17	NA	138117313	138133753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_138117605_138124656_138124814_138127765_138127861_138133129
transcript_115387.nic	chr6	+	4405	26	NIC	ENSMUSG00000030231.12	novel	7382	31	NA	NA	-112	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_24	11.9895954894233	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGGTGTTAGAATCTTT	NA	False	NA	17	True	AATAAA	-17	NA	140369667	140542836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_140369983_140370102_140370183_140372223_140372282_140470590_140470675_140471564_140471686_140472182_140472288_140474286_140474360_140480187_140480289_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140518590_140518693_140522952_140523065_140525155_140525203_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140539280_140539384_140541974
transcript_115395.nic	chr6	+	2796	9	NIC	ENSMUSG00000030232.19	novel	5932	8	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	104.343108900396	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTCAAATTGTAACAATTC	NA	False	NA	NA	False	AATAAA	-20	NA	140568336	140598552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_140568785_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481_140596509_140597041
transcript_115397.nic	chr6	+	2105	9	NIC	ENSMUSG00000030232.19	novel	2575	9	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	123	junction_8	72.0736385580747	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGCAAGAAGCCATATGGA	NA	False	NA	NA	False	AATAAA	-18	NA	140569231	140597470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_140570071_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481_140596509_140597041
transcript_115398.nic	chr6	+	4065	9	NIC	ENSMUSG00000030232.19	novel	2575	9	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	123	junction_8	72.0736385580747	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTCAAATTGTAACAATTC	NA	False	NA	NA	False	AATAAA	-20	NA	140568353	140598552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_140570071_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481_140596509_140597041
transcript_115399.nic	chr6	+	4164	9	NIC	ENSMUSG00000030232.19	novel	2575	9	NA	NA	-1	-623	combination_of_known_junctions	FALSE	canonical	3	123	junction_8	72.0736385580747	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTCACATGTGTCTAT	NA	False	NA	NA	False	AATAAA	-23	NA	140569223	140599521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_140570071_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481_140596509_140597041
transcript_1154.known	chr1	-	3381	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGTTCTCTGTTTGATGG	NA	False	NA	NA	False	TATAAA	-17	NA	38036396	38024269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
transcript_115402.known	chr6	+	5932	8	FSM	ENSMUSG00000030232.19	ENSMUST00000032359.15	5932	8	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	98.0522559554811	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGATGACTGTGGTTC	NA	False	NA	8	True	NA	NA	NA	140568388	140601207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_140568785_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481
transcript_115403.known	chr6	+	3727	8	FSM	ENSMUSG00000030232.19	ENSMUST00000087614.11	3727	8	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_4	41.8398306470214	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTCAAATTGTAACAATTC	NA	False	NA	NA	False	AATAAA	-20	NA	140569224	140598552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_140570071_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481
transcript_115406.known	chr6	-	213	1	FSM	ENSMUSG00000080921.5	ENSMUST00000117356.2	213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	325	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCCTCTGCGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	140692898	140692685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_140692700_140692900
transcript_115407.known	chr6	-	2112	16	FSM	ENSMUSG00000030243.17	ENSMUST00000032370.13	2112	16	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_1	39.7130820875047	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTCTAAAGTTACATTT	6231	False	NA	NA	False	TTTAAA	-16	NA	142332762	142296067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_142296272_142308531_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
transcript_115411.known	chr6	-	3389	15	FSM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_14	18.9118524546197	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAGGAGACCTATCTTA	6180	False	NA	NA	False	AATAAA	-26	NA	142332813	142307101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
transcript_115420.nnic	chr6	-	2829	14	NIC	ENSMUSG00000030243.17	novel	3389	15	NA	NA	-13	220	intron_retention	FALSE	canonical	2	13	junction_13	39.2829215944293	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCCGTTTCACCAATTA	6167	False	NA	-3	True	ATTAAA	-18	NA	142332826	142307626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142332747
transcript_115428.known	chr6	+	2831	12	FSM	ENSMUSG00000041671.14	ENSMUST00000041852.8	2831	12	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	7.76088944378656	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCGTAGTAATAGACTCC	NA	False	NA	NA	False	NA	NA	NA	142291379	142308983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_142291534_142293283_142293365_142294248_142294369_142296787_142296917_142299250_142299325_142300350_142300512_142302208_142302310_142303105_142303239_142304124_142304238_142304761_142304885_142306584_142306723_142307479
transcript_115439.known	chr6	+	2208	1	FSM	ENSMUSG00000041671.14	ENSMUST00000204971.2	2208	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	142291392	142293600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_142291400_142293600
transcript_115441.nnic	chr6	+	2820	6	NNC	ENSMUSG00000030245.11	novel	2818	5	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	283.233190145505	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	25	True	AATAAA	-19	NA	142332908	142349584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr6_+_142333096_142338055_142338148_142339653_142339729_142339832_142339901_142341913_142341996_142347268
transcript_115443.known	chr6	+	2818	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_3	45.9911676303179	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	25	True	AATAAA	-19	NA	142332946	142349584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
transcript_115447.known	chr6	+	367	3	FSM	ENSMUSG00000030245.11	ENSMUST00000146508.2	367	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	306	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCCAACAGCTGTGGCA	NA	False	NA	NA	False	TTTAAA	-15	NA	142332978	142347436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_142333096_142341913_142341996_142347268
transcript_115450.known	chr6	-	1287	8	FSM	ENSMUSG00000030246.13	ENSMUST00000239397.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_1	65.6636450839754	1234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTCTGCCTGCCTTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	142453669	142435977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
transcript_115452.nic	chr6	-	1188	7	NIC	ENSMUSG00000030246.13	novel	1304	8	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	308.522104376476	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	-4	True	AATAAA	-19	NA	142453691	142435974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_142436331_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
transcript_115453.nic	chr6	-	2792	7	NIC	ENSMUSG00000030246.13	novel	1287	8	NA	NA	-8	0	intron_retention	FALSE	canonical	3	685	junction_1	70.5275753793429	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTCTGCCTGCCTTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	142453691	142435977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_142436331_142438218_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
transcript_115456.known	chr6	+	1760	8	FSM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_7	54.6573743554204	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTACTGTAAGACCT	NA	False	NA	33	True	AATAAA	-22	NA	142702411	142721440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840_142717995_142720875
transcript_115458.nic	chr6	+	2365	7	ISM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	50	2226	-18	-1176	5prime_fragment	FALSE	canonical	3	691	junction_3	53.4189417092227	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATGGCTTAAACACCC	NA	False	NA	NA	False	ATTAAA	-21	NA	142702461	142719214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840
transcript_115460.nic	chr6	+	3624	7	ISM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	-33	1050	-33	0	5prime_fragment	FALSE	canonical	3	691	junction_3	53.4189417092227	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGTGAGTTTGATC	NA	False	NA	9	True	ATTAAA	-20	NA	142702378	142720390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840
transcript_115463.nic	chr6	+	1012	6	ISM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	-33	4439	-33	-59	5prime_fragment	FALSE	canonical	3	691	junction_3	56.577734136319	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATCTTATGATGTAAAA	NA	False	NA	NA	False	AAAAAG	-4	NA	142702378	142717001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891
transcript_115468.known	chr6	+	625	4	FSM	ENSMUSG00000030282.15	ENSMUST00000204147.2	625	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	333.043540697009	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGAGGAAGGAGATGGGC	NA	False	NA	NA	False	AAAACA	-38	NA	142702500	142717946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_142702753_142716248_142716344_142716891_142717064_142717840
transcript_115471.known	chr6	-	8991	5	FSM	ENSMUSG00000030283.8	ENSMUST00000032421.4	8991	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	3.11247489949718	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGCTTCTGACGTCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	142910178	142767270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_142774997_142813579_142813673_142822373_142822484_142859749_142859895_142909261
transcript_115479.nic	chr6	-	4485	27	NIC	ENSMUSG00000030279.16	novel	3494	26	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_4	21.2642225290113	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCTAACTCTTTGCCT	NA	False	NA	NA	False	AATAAA	-16	NA	143045881	142956653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_142957863_142958927_142959075_142963608_142963800_142965053_142965156_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
transcript_115480.nic	chr6	-	4305	27	NIC	ENSMUSG00000030279.16	novel	3494	26	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_26	34.3139007835345	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCTAACTCTTTGCCT	NA	False	NA	NA	False	AATAAA	-16	NA	143045866	142956653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_142957863_142958927_142959075_142963608_142963800_142965053_142965156_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045823
transcript_115482.nic	chr6	-	3680	27	NIC	ENSMUSG00000030279.16	novel	3494	26	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_4	21.2642225290113	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGAAAGCTTATCAAGA	NA	False	NA	NA	False	AATAAA	-17	NA	143045881	142957458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_142957863_142958927_142959075_142963608_142963800_142965053_142965156_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
transcript_115484.known	chr6	-	3494	26	FSM	ENSMUSG00000030279.16	ENSMUST00000203187.3	3494	26	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	32.7664218369965	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGAAAGCTTATCAAGA	NA	False	NA	NA	False	AATAAA	-17	NA	143045797	142957458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_142957863_142958927_142959075_142963608_142963800_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
transcript_115486.known	chr6	-	4292	25	FSM	ENSMUSG00000030279.16	ENSMUST00000171349.8	4292	25	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	28.9653768412489	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTTTGCCTCTTTTGTG	NA	False	NA	NA	False	AATAAA	-24	NA	143045833	142956645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_142957863_142958927_142959075_142963608_142963800_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
transcript_115489.known	chr6	-	4584	22	FSM	ENSMUSG00000030279.16	ENSMUST00000203349.3	4584	22	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_6	17.6396276203619	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGTTTTCCAGGAAGCT	NA	False	NA	NA	False	NA	NA	NA	143045833	142973038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
transcript_115494.known	chr6	+	6433	8	FSM	ENSMUSG00000030275.7	ENSMUST00000032413.7	6433	8	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_4	19.0541655416813	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCCATGTGGTTCATAC	NA	False	NA	25	True	AATAAA	-38	NA	143112955	143154272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_143113363_143126312_143126573_143130298_143130440_143132217_143132361_143140957_143141042_143143130_143143292_143148804_143148879_143149109
transcript_1155.known	chr1	-	1699	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195247.6	1699	5	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_4	302.235318088406	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACATGTCTGTTTTTAA	NA	False	NA	-3	True	NA	NA	NA	38036974	38026474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036244
transcript_115504.known	chr6	-	7833	11	FSM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_10	1157.84085262181	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTTGCCCAGTGTCGTGA	NA	False	NA	-5	True	AATAAA	-16	NA	144994538	144939560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
transcript_115516.known	chr6	-	2556	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	8006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	8485	False	NA	-24	True	AATAAA	-16	NA	145021910	144944883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
transcript_115520.nic	chr6	+	2410	20	NIC	ENSMUSG00000030263.14	novel	2319	19	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	15.9512762278257	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145067408	145120654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_145067833_145083185_145083334_145083771_145083813_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_115525.known	chr6	+	2319	19	FSM	ENSMUSG00000030263.14	ENSMUST00000032396.13	2319	19	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	13.9594872380979	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTGGAACGCCTGGT	NA	False	NA	17	True	AATAAA	-22	NA	145067464	145120660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145067833_145083185_145083334_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_115526.nic	chr6	+	2859	19	NIC	ENSMUSG00000030263.14	novel	2319	19	NA	NA	-67	0	intron_retention	FALSE	canonical	3	7	junction_2	14.613540144522	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145067397	145120654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_145067833_145083185_145083813_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_115534.known	chr6	+	1761	17	FSM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	14.1684894660652	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145091202	145120654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145091249_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_115542.known	chr6	-	1194	6	FSM	ENSMUSG00000030265.15	ENSMUST00000111710.8	1194	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	471.744252747185	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACTCATCCAATGGAGTC	NA	False	NA	NA	False	AATGAA	-30	NA	145195903	145165970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_145166451_145170799_145170924_145177820_145177981_145179973_145180153_145192420_145192543_145195774
transcript_115545.known	chr6	-	4678	5	FSM	ENSMUSG00000030265.15	ENSMUST00000032399.12	4678	5	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_1	85.6661397519463	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTAATTATGTAGTTTT	NA	False	NA	-8	True	AATAAA	-22	NA	145195965	145162424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_145166451_145177820_145177981_145179973_145180153_145192420_145192543_145195774
transcript_115551.known	chr6	+	842	4	FSM	ENSMUSG00000040370.14	ENSMUST00000111723.8	842	4	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_1	144.739612945301	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATGATAATATAATTTTG	NA	False	NA	NA	False	NA	NA	NA	145156900	145161497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145156971_145160247_145160511_145160909_145160998_145161076
transcript_115552.known	chr6	-	832	4	FSM	ENSMUSG00000030265.15	ENSMUST00000156486.2	832	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	433.641172706959	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATGGGAAGCAGGATAAT	NA	False	NA	NA	False	NA	NA	NA	145195896	145166022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_145166451_145177820_145177981_145192420_145192543_145195774
transcript_115556.known	chr6	+	1336	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111721.2	1336	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	139.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156911	145162265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145156971_145160909_145160998_145161076
transcript_115560.known	chr6	+	2436	3	FSM	ENSMUSG00000040370.14	ENSMUST00000039729.5	2436	3	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	153.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	AAAACA	-33	NA	145156881	145162665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145156979_145160247_145160998_145161076
transcript_115561.known	chr6	-	817	3	FSM	ENSMUSG00000030265.15	ENSMUST00000203147.3	817	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	493.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCAATCGCCGCTTCAC	NA	False	NA	NA	False	NA	NA	NA	145195965	145165946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_145166451_145192420_145192543_145195774
transcript_115562.nic	chr6	-	767	3	ISM	ENSMUSG00000030265.15	ENSMUST00000111710.8	1194	6	-343	14009	-281	12450	5prime_fragment	FALSE	canonical	3	987	junction_2	51	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGGTGGGTTTAAGTTG	NA	False	NA	NA	False	CATAAA	-31	NA	145196246	145179979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_145180153_145192420_145192543_145195774
transcript_115564.known	chr6	+	1618	4	FSM	ENSMUSG00000040370.14	ENSMUST00000111724.8	1618	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	142.199390528464	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156900	145162265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145156979_145160247_145160511_145160909_145160998_145161076
transcript_115565.known	chr6	+	899	2	FSM	ENSMUSG00000086013.2	ENSMUST00000139612.2	899	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGTGAGGATTCTGACT	NA	False	NA	6	True	NA	NA	NA	145196254	145197575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145196516_145196937
transcript_115566.known	chr6	+	378	1	FSM	ENSMUSG00000067344.8	ENSMUST00000119876.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGTTCAATCAGCTGTAC	891	False	NA	NA	False	NA	NA	NA	145212125	145212503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145212100_145212500
transcript_115567.known	chr6	+	1775	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	0	0	0	0	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	766	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCTTCCCTGTGTGCT	NA	False	NA	16	True	AATAAA	-36	NA	145561482	145567205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
transcript_115571.known	chr6	+	5446	5	FSM	ENSMUSG00000030259.13	ENSMUST00000111704.8	5446	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	5.44862367942584	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTGTTGCTTGCTTTC	NA	False	NA	NA	False	AATAAA	-23	NA	145692473	145766805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145692693_145754109_145754289_145760778_145761669_145762223_145762369_145762792
transcript_115574.known	chr6	+	4431	3	FSM	ENSMUSG00000030255.14	ENSMUST00000032383.14	4431	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGGTGTTGAGTATGTT	NA	False	NA	NA	False	AATAAA	-19	NA	145879847	145910949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_145880098_145901320_145901408_145906855
transcript_115577.known	chr6	-	3059	18	FSM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	56.6296167637544	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479333	146451129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
transcript_115586.nic	chr6	-	3004	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	24.9699819783675	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479356	146451129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
transcript_115587.nnic	chr6	-	2863	16	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_14	63.7024332345319	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479290	146451129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146477722_146477959_146478798
transcript_115600.nic	chr6	-	2276	14	ISM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	-23	4450	-23	0	5prime_fragment	FALSE	canonical	3	203	junction_12	19.9214433544722	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGAAGAAGCGAGGGAGGAA	NA	False	NA	1	True	NA	NA	NA	146479356	146455579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
transcript_115604.known	chr6	+	2880	7	FSM	ENSMUSG00000040242.15	ENSMUST00000111663.9	2880	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	146.964470385041	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146494246_146496673_146496788_146498792
transcript_115610.known	chr6	+	2766	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	164.658434342125	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
transcript_115614.known	chr6	+	918	5	FSM	ENSMUSG00000040242.15	ENSMUST00000058245.5	918	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	170.445005793658	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGTGTGCTTTTCATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	146479418	146494363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131
transcript_115616.nic	chr6	+	554	3	ISM	ENSMUSG00000040242.15	ENSMUST00000058245.5	918	5	-46	4043	16	-1193	5prime_fragment	FALSE	canonical	3	396	junction_1	2.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGACAAATCAGAGAATTAC	NA	False	NA	NA	False	AAGAAA	-2	NA	146479372	146490320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_146479707_146487179_146487317_146490237
transcript_115617.known	chr6	+	528	3	FSM	ENSMUSG00000040242.15	ENSMUST00000205231.2	528	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	198	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAGAGCAACACTCAAA	NA	False	NA	NA	False	AAGAAA	-25	NA	146479437	146491513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146479707_146487179_146487317_146491391
transcript_115620.known	chr6	-	3241	12	FSM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_8	114.912830779186	591	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAATGTCCTCCTTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	146536095	146503849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
transcript_115641.known	chr6	+	814	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	35.4902177445498	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544044	146552100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
transcript_115642.known	chr6	+	699	3	FSM	ENSMUSG00000030291.13	ENSMUST00000125539.8	699	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	124.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544044	146552100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146544151_146550647_146550749_146551608
transcript_115644.known	chr6	+	4550	14	FSM	ENSMUSG00000001630.14	ENSMUST00000001675.14	4550	14	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_10	10.7620855417108	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTGGGGTGTTTGTTTT	NA	False	NA	15	True	AATAAA	-20	NA	146626492	146680310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
transcript_115648.nic	chr6	+	2163	9	ISM	ENSMUSG00000040187.16	ENSMUST00000129788.8	1664	15	14863	-883	-38	0	3prime_fragment	FALSE	canonical	0	0	junction_7	1.49478259288767	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTATTTGCCTTTCTGAA	NA	False	NA	NA	False	TTTAAA	-5	NA	146721890	146735027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_146722167_146723407_146723649_146724086_146724194_146724591_146724743_146726664_146726727_146728713_146728823_146729596_146729685_146731190_146731300_146734007
transcript_115655.known	chr6	+	4782	28	FSM	ENSMUSG00000016487.16	ENSMUST00000111623.9	4782	28	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_9	81.0878370126214	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTATTTGTCATTGTT	7641	False	NA	13	True	AATAAA	-17	NA	146790086	146933523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146790182_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146901159_146901193_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
transcript_115658.nic	chr6	+	4908	28	NIC	ENSMUSG00000016487.16	novel	4782	28	NA	NA	-29	0	combination_of_known_junctions	TRUE	canonical	1	35	junction_15	73.2858432087318	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGTATTTGTCATTG	7510	False	NA	11	True	AATAAA	-15	NA	146789955	146933521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_146790182_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146914415_146914446_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
transcript_115662.nic	chr6	+	5025	28	NIC	ENSMUSG00000016487.16	novel	4782	28	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	1	49	junction_2	70.7910234325529	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGTATTTGTCATTG	7524	False	NA	11	True	AATAAA	-15	NA	146789969	146933521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_146790182_146819245_146819407_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
transcript_115664.known	chr6	+	4851	27	FSM	ENSMUSG00000016487.16	ENSMUST00000016631.14	4851	27	0	0	0	0	multi-exon	FALSE	canonical	1	79	junction_5	45.7139938177494	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTATTTGTCATTGTT	7539	False	NA	13	True	AATAAA	-17	NA	146789984	146933523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146790182_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
transcript_115671.nic	chr6	+	1825	16	ISM	ENSMUSG00000016487.16	ENSMUST00000016631.14	4851	27	-29	15665	-29	-1085	5prime_fragment	FALSE	canonical	1	79	junction_5	54.3276479643039	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGGAAAGAGGACAGCAAGT	7510	False	NA	NA	False	TTTAAA	-8	NA	146789955	146917858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_146790182_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719
transcript_115673.nic	chr6	+	1156	9	ISM	ENSMUSG00000016487.16	ENSMUST00000016631.14	4851	27	-29	33744	-29	-3968	5prime_fragment	FALSE	canonical	1	79	junction_5	69.5611242002313	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGCTGACTGTGGTACT	7510	False	NA	NA	False	NA	NA	NA	146789955	146899779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_146790182_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664
transcript_115680.known	chr6	+	4162	8	FSM	ENSMUSG00000040112.10	ENSMUST00000036111.10	4162	8	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_4	51.0230040155958	309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATACTCTACTTCCTTGT	NA	False	NA	NA	False	TTTAAA	-16	NA	146944261	146975489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
transcript_115687.known	chr6	+	6267	3	FSM	ENSMUSG00000040102.11	ENSMUST00000036003.8	6267	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	10.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGATGTGTGTGTGGTGA	NA	False	NA	NA	False	AATAAA	-17	NA	146992876	147014276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_146993866_147003063_147003258_147009192
transcript_115697.nic	chr6	+	2309	13	NIC	ENSMUSG00000030301.18	novel	2459	13	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	22.1514672200286	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTGTCATGTTTTTG	NA	False	NA	17	True	AATAAA	-18	NA	147377354	147534110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_+_147377394_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
transcript_115698.known	chr6	+	2459	13	FSM	ENSMUSG00000030301.18	ENSMUST00000032441.14	2459	13	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	9.07683253612673	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTGTCATGTTTTTG	NA	False	NA	17	True	AATAAA	-18	NA	147377368	147534110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_147377558_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
transcript_115703.known	chr6	-	4174	14	FSM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	0	0	0	0	multi-exon	FALSE	canonical	3	798	junction_5	68.0164442351299	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	148113872	148080576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
transcript_115716.nnic	chr6	-	2793	13	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	-6	-964	combination_of_known_splicesites	FALSE	canonical	3	36	junction_9	251.686423065599	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTTAAAGCAAACTTTT	NA	False	NA	-12	True	ATTAAA	-17	NA	148113526	148081540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148103993_148104041_148106273_148106383_148108030_148108174_148113467
transcript_115724.known	chr6	-	713	4	FSM	ENSMUSG00000030304.12	ENSMUST00000132413.2	713	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	425.360500699766	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTAAATGTTCTTATT	NA	False	NA	NA	False	AAGAAA	-1	NA	148113503	148104198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148104624_148106273_148106383_148108030_148108174_148113467
transcript_115725.known	chr6	+	943	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9011	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	13	True	ATTAAA	-17	NA	148256153	148257096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_148256200_148257100
transcript_115726.known	chr6	+	789	1	FSM	ENSMUSG00000063171.5	ENSMUST00000204242.2	789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGACTCTGAGGGACATT	NA	False	NA	-25	True	NA	NA	NA	148256207	148256996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_148256200_148257000
transcript_115728.known	chr6	-	5360	25	FSM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	0	0	0	0	multi-exon	TRUE	canonical	3	188	junction_1	23.3505516827524	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTCTGCTCTATGGGAT	NA	False	NA	-1	True	AATAAA	-27	NA	148732965	148672180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148674308_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
transcript_115741.nic	chr6	-	1457	11	ISM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	-19	31233	-19	0	5prime_fragment	FALSE	canonical	3	206	junction_10	20.3668848869924	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTATACAGTTGTTCTTT	NA	False	NA	NA	False	AAGAAA	-7	NA	148732984	148703413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
transcript_115742.nic	chr6	-	1176	9	ISM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	-19	35809	-19	-4576	5prime_fragment	FALSE	canonical	3	206	junction_8	22.7582402658905	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAGAAAGAGTATATAGCC	NA	False	NA	NA	False	AATACA	-1	NA	148732984	148707989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
transcript_115744.known	chr6	-	1408	11	FSM	ENSMUSG00000040029.16	ENSMUST00000204936.2	1408	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	65.1536645170477	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATACAGTTGTTCTTTGT	NA	False	NA	NA	False	AAGAAA	-9	NA	148732962	148703411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725955_148732661
transcript_115745.known	chr6	-	3697	19	FSM	ENSMUSG00000030309.17	ENSMUST00000111569.9	3697	19	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_10	9.04805415272352	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	-1	True	AATAAA	-14	NA	148797735	148743989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
transcript_115751.known	chr6	-	2952	18	FSM	ENSMUSG00000030309.17	ENSMUST00000072324.12	2952	18	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_10	17.2566621205624	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148797648	148743990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
transcript_115766.known	chr6	-	598	4	FSM	ENSMUSG00000030309.17	ENSMUST00000204942.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	37.0075067460043	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTAGCTCCTGCTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148797660	148789168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148789289_148792106_148792170_148796434_148796705_148797515
transcript_115772.known	chr6	-	2737	6	FSM	ENSMUSG00000039985.15	ENSMUST00000081956.12	2737	6	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	848.577303490967	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148846324	148822554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148846086
transcript_115773.known	chr6	-	906	6	FSM	ENSMUSG00000039985.15	ENSMUST00000111562.8	906	6	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	856.005280357545	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTCTGAAGCCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	148846310	148824210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148846247
transcript_115774.nic	chr6	-	2688	6	NIC	ENSMUSG00000039985.15	novel	2737	6	NA	NA	-80	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_5	837.245818144229	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148847733	148822554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847544
transcript_115775.known	chr6	-	2697	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTCTCTGGTAAGAATTT	NA	False	NA	NA	False	AATAAA	-24	NA	148847965	148822532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
transcript_115776.known	chr6	-	571	5	FSM	ENSMUSG00000039985.15	ENSMUST00000204119.3	571	5	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_3	848.75537553526	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGCCGTTTTGGGGAAG	NA	False	NA	NA	False	NA	NA	NA	148847908	148824501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148834499_148834647_148847789
transcript_115780.nic	chr6	-	601	3	ISM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	-188	9526	-188	58	5prime_fragment	FALSE	canonical	3	2284	junction_2	83.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAATCACGTTAGTTCAT	NA	False	NA	NA	False	NA	NA	NA	148848153	148832058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_-_148832149_148834499_148834647_148847789
transcript_115781.known	chr6	+	1747	2	FSM	ENSMUSG00000085355.3	ENSMUST00000154673.2	1747	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCAGTAATTCCGTCTTG	NA	False	NA	NA	False	AATAAA	-20	NA	148846364	148848627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_148847919_148848434
transcript_115783.known	chr6	-	9831	21	FSM	ENSMUSG00000030313.16	ENSMUST00000111557.8	9831	21	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_11	5.03487835006964	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTGTTTTGTTTCACT	NA	False	NA	1	True	AATAAA	-16	NA	149003178	148889568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_148895388_148899754_148899930_148901418_148901546_148902096_148902180_148906663_148906852_148908223_148908343_148911252_148911399_148915613_148915736_148918479_148918609_148920838_148920921_148922042_148922122_148928780_148928934_148930607_148930740_148934763_148934858_148937883_148938035_148943013_148943246_148945980_148946518_148956397_148956586_148969547_148970215_148982303_148982414_149002680
transcript_115788.known	chr6	+	1558	5	FSM	ENSMUSG00000039958.18	ENSMUST00000111551.2	1558	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	10.2316909648406	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAACTCAAGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	149043143	149052669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149043203_149044103_149044214_149045512_149045941_149048655_149048787_149051839
transcript_115789.known	chr6	+	1562	4	FSM	ENSMUSG00000039958.18	ENSMUST00000047531.16	1562	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	11.6141675934562	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAACTCAAGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	149043010	149052669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149043203_149045531_149045941_149048655_149048787_149051839
transcript_115790.known	chr6	+	1398	3	FSM	ENSMUSG00000039958.18	ENSMUST00000111548.8	1398	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTGGGAAAGAAAATGTT	NA	False	NA	NA	False	NA	NA	NA	149043013	149046630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149043203_149044103_149044214_149045531
transcript_115791.known	chr6	+	1250	2	FSM	ENSMUSG00000039958.18	ENSMUST00000111547.2	1250	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTGGGAAAGAAAATGTT	NA	False	NA	NA	False	NA	NA	NA	149043051	149046630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149043203_149045531
transcript_115792.known	chr6	-	1369	7	FSM	ENSMUSG00000068250.14	ENSMUST00000095319.10	1369	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	36.5087508535815	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090183	149059075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089733
transcript_115794.known	chr6	-	1457	7	FSM	ENSMUSG00000068250.14	ENSMUST00000111535.8	1457	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	14.7723465374402	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGGGGGGCGGCT	NA	False	NA	NA	False	NA	NA	NA	149090210	149058644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149090103
transcript_115795.nic	chr6	-	889	6	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	34.1607962436475	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090206	149059075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149090103
transcript_115805.known	chr6	+	1957	5	FSM	ENSMUSG00000032712.17	ENSMUST00000130664.8	1957	5	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_3	55.879334283794	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAATTAAAATTAATA	NA	False	NA	NA	False	ATTAAA	-39	NA	149210911	149228169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149211403_149211819_149211876_149219132_149219207_149226229_149226299_149226902
transcript_115807.known	chr6	+	4152	4	FSM	ENSMUSG00000032712.17	ENSMUST00000190785.7	4152	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	71.6286720990042	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAGAAGAAATAT	NA	False	NA	15	True	AAAAAG	-33	NA	149210953	149230475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149211403_149211819_149211876_149219132_149219207_149226902
transcript_115810.nic	chr6	+	1757	4	ISM	ENSMUSG00000032712.17	ENSMUST00000100765.11	5356	6	-47	8372	-1	-113	5prime_fragment	FALSE	canonical	3	26	junction_2	76.1416808033258	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACCTACAATCCTAATAC	NA	False	NA	NA	False	AAAAAG	-5	NA	149210924	149228056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_149211403_149211819_149211876_149226229_149226299_149226902
transcript_115812.nic	chr6	+	1706	3	ISM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	-19	9105	-5	-113	5prime_fragment	FALSE	canonical	3	27	junction_2	92	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACCTACAATCCTAATAC	NA	False	NA	NA	False	AAAAAG	-5	NA	149210906	149228056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr6_+_149211403_149211819_149211876_149226902
transcript_115814.known	chr6	+	6066	5	FSM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	95.7405347802069	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTCTTCATGGTTCT	NA	False	NA	12	True	AATAAA	-24	NA	149210925	149237161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149211403_149211819_149211876_149226902_149231283_149232923_149233005_149236089
transcript_115815.known	chr6	+	4049	8	FSM	ENSMUSG00000003452.16	ENSMUST00000111513.9	4049	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	6.57763681898362	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATAGATA	182	False	NA	NA	False	AATGAA	-12	NA	149310513	149459317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420612_149458141
transcript_115816.known	chr6	+	9667	9	FSM	ENSMUSG00000003452.16	ENSMUST00000086829.11	9667	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_7	6.68487097856047	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTGTTTTTGTTGTTTTT	150	False	NA	NA	False	AATAAA	-32	NA	149310481	149464827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420612_149451847_149451924_149458141
transcript_115820.known	chr6	+	873	1	FSM	ENSMUSG00000096299.4	ENSMUST00000203277.2	873	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATTCTCTCCTATTT	NA	False	NA	NA	False	AAAAAG	-23	NA	149467587	149468460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr6_+_149467600_149468500
transcript_115824.nnic	chr7	-	2070	3	NNC	ENSMUSG00000055452.7	novel	2866	3	NA	NA	-1	512	at_least_one_novel_splicesite	FALSE	non_canonical	2	2	junction_2	85	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACCATAGGACCTGT	7183	False	NA	NA	False	AATAAA	-42	NA	3161964	3158507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_3160168_3160215_3160566_3161904
transcript_115828.nic	chr7	-	3518	12	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	3	141	junction_11	34.6786904344431	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9434	False	NA	87	True	NA	NA	NA	3219101	3204497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214125_3218840
transcript_115829.known	chr7	-	3449	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9506	False	NA	87	True	NA	NA	NA	3219029	3204497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
transcript_115831.nnic	chr7	-	3234	11	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	-45	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_9	75.555343953952	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9559	False	NA	87	True	NA	NA	NA	3218976	3204497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3213722_3214125_3218840
transcript_115832.nnic	chr7	-	3253	11	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	37	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_9	78.1811358321175	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9543	False	NA	87	True	NA	NA	NA	3218992	3204497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3213722_3214128_3218840
transcript_115834.known	chr7	-	535	3	FSM	ENSMUSG00000054753.10	ENSMUST00000203937.2	535	3	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_2	56.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCATAGGGAACCATATC	9604	False	NA	NA	False	NA	NA	NA	3218931	3212158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_3212201_3213722_3214125_3218840
transcript_115835.known	chr7	+	795	1	FSM	ENSMUSG00000107470.3	ENSMUST00000203929.3	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGGTGGATGCGGTTGT	NA	False	NA	NA	False	NA	NA	NA	3230841	3231636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3230800_3231600
transcript_115836.nnic	chr7	+	2465	3	Genic_Genomic	ENSMUSG00000077815.3_ENSMUSG00000077903.3_ENSMUSG00000077886.3	novel	84	1	NA	NA	-792	171	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTTGCTGCTTTCTCAG	NA	False	NA	NA	False	AATAAA	-13	NA	3266507	3269686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr7_+_3266594_3267223_3268627_3268710
transcript_115838.known	chr7	+	3127	18	FSM	ENSMUSG00000078816.11	ENSMUST00000100301.11	3127	18	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_10	8.64845927034781	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGATGTTTTCTTGTA	NA	False	NA	11	True	AATAAA	-22	NA	3352037	3379615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3362648_3362737_3363027_3363058_3367375_3367529_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
transcript_115839.known	chr7	+	2119	17	FSM	ENSMUSG00000078816.11	ENSMUST00000172109.4	2119	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_9	8.11802585300146	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCCGCCAAGCCGGCTGT	NA	False	NA	NA	False	NA	NA	NA	3352160	3378883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3362648_3362737_3363027_3363058_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
transcript_115842.known	chr7	+	1898	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203328.4	1898	3	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	468	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCGGTGGCCAGAAGTCA	905	False	NA	NA	False	TTTAAA	-38	NA	3337604	3346801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3337851_3341727_3341816_3345237
transcript_115844.known	chr7	+	2813	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_1	308.5	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	230	False	NA	14	True	AATATA	-8	NA	3339058	3347865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3339156_3341727_3341816_3345237
transcript_115846.known	chr7	+	4027	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203566.3	4027	3	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	341	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGTCCAGTTCATAGCG	271	False	NA	NA	False	ATTAAA	-14	NA	3339099	3348958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3339318_3341727_3341816_3345237
transcript_115848.nnic	chr7	+	2727	3	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-151	-108	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	427.5	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	2639	False	NA	13	True	NA	NA	NA	3341467	3347730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_3341614_3341727_3341816_3345237
transcript_115849.nnic	chr7	+	2835	3	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-151	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	427.5	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAAAACCCTCAATATA	2639	False	NA	-13	True	TTTAAA	-10	NA	3341467	3347838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_3341614_3341727_3341816_3345237
transcript_115850.known	chr7	+	2798	2	FSM	ENSMUSG00000068566.14	ENSMUST00000164553.8	2798	2	0	0	0	0	multi-exon	FALSE	canonical	3	952	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAAAACCCTCAATATA	2790	False	NA	-13	True	TTTAAA	-10	NA	3341618	3347838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3341816_3345237
transcript_115851.known	chr7	+	2212	6	FSM	ENSMUSG00000069806.6	ENSMUST00000092891.6	2212	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGTGTCTCACCAAAGG	NA	False	NA	15	True	AATAAA	-15	NA	3381470	3416737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3381553_3385071_3385297_3386960_3387048_3387401_3387543_3414462_3414609_3415206
transcript_115853.nnic	chr7	+	2815	5	NNC	ENSMUSG00000078815.9	novel	1977	4	NA	NA	-706	-3	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_3	7.79422863405995	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCCTGTCTGTGTTGGAG	NA	False	NA	NA	False	ATTAAA	-18	NA	3472004	3484180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_3473509_3478953_3479029_3480334_3480473_3481159_3481295_3483217
transcript_115856.known	chr7	+	1977	4	FSM	ENSMUSG00000078815.9	ENSMUST00000183200.8	1977	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	6.16441400296898	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCTGTGTTGGAGCTC	NA	False	NA	NA	False	ATTAAA	-21	NA	3472710	3484183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3473509_3478953_3479029_3480334_3480473_3483217
transcript_115857.known	chr7	+	868	3	FSM	ENSMUSG00000078815.9	ENSMUST00000108647.3	868	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	11.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATCCCCAGAACCCA	NA	False	NA	NA	False	NA	NA	NA	3473177	3483679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3473509_3478953_3479029_3483217
transcript_115860.nnic	chr7	-	930	6	NNC	ENSMUSG00000053338.10	novel	1535	6	NA	NA	-31010	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	14.4360659460949	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTCCTTTTTACGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	3582150	3537586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_3537738_3544441_3544508_3545190_3545488_3545940_3546232_3546711_3546748_3582061
transcript_115863.known	chr7	-	1166	6	FSM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	47.3142684610044	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632928	3623322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
transcript_115864.known	chr7	-	1091	6	FSM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	68.2800117164606	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632883	3623322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
transcript_115868.known	chr7	+	343	4	FSM	ENSMUSG00000035674.14	ENSMUST00000148403.2	343	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	1620.57650921585	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTCTTTCGTGGGTT	273	False	NA	22	True	AATAAA	-24	NA	3620389	3623162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3620417_3620615_3620691_3622428_3622507_3622999
transcript_115870.known	chr7	+	782	4	FSM	ENSMUSG00000035674.14	ENSMUST00000150497.8	782	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1418.73472581107	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACCCCACAATCTTTTC	262	False	NA	11	True	AATAAA	-13	NA	3620378	3623151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3620407_3620615_3621140_3622428_3622507_3622999
transcript_115875.known	chr7	+	136	2	FSM	ENSMUSG00000035674.14	ENSMUST00000156712.2	136	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATCCTCCACCCGGAAGT	267	False	NA	NA	False	NA	NA	NA	3620383	3620718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3620417_3620615
transcript_115877.known	chr7	+	351	4	FSM	ENSMUSG00000035674.14	ENSMUST00000108644.8	351	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1435.61655357163	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTCCAATAAAAATGTGAA	268	False	NA	-13	True	NA	NA	NA	3620384	3623127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622951
transcript_115880.known	chr7	+	3125	14	FSM	ENSMUSG00000008373.17	ENSMUST00000179769.8	3125	14	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_9	235.328122934313	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGAGTTCAATACTTGG	2933	False	NA	NA	False	AATAAA	-20	NA	3632983	3645484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641647_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
transcript_115902.known	chr7	+	827	3	FSM	ENSMUSG00000008373.17	ENSMUST00000143231.2	827	3	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_1	159.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAAATAAACATG	2940	False	NA	NA	False	AAAAAG	-2	NA	3632990	3634420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3633056_3633556_3633742_3633843
transcript_115905.known	chr7	+	1798	13	FSM	ENSMUSG00000008373.17	ENSMUST00000108636.2	1798	13	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_8	240.724759262985	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTGTGAGTGATTAT	3505	False	NA	14	True	ATTAAA	-22	NA	3633555	3644228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641647_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
transcript_115906.nnic	chr7	+	2999	19	NNC	ENSMUSG00000035632.17	novel	2822	18	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	322.021393354196	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGGCAGCTGAGGCCTC	2710	False	NA	NA	False	AATAAA	-14	NA	3648248	3664099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_3648595_3648991_3649065_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
transcript_115907.nnic	chr7	+	2996	18	NNC	ENSMUSG00000035632.17	novel	2822	18	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	330.904914263504	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGGCAGCTGAGGCCTC	2686	False	NA	NA	False	AATAAA	-14	NA	3648224	3664099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_3648584_3653799_3653875_3653979_3654048_3654169_3654302_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
transcript_115908.known	chr7	+	2822	18	FSM	ENSMUSG00000035632.17	ENSMUST00000038913.16	2822	18	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	78.9623448430591	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCTCCTATCCC	2812	False	NA	NA	False	AATAAA	-23	NA	3648350	3664108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
transcript_115918.known	chr7	-	2310	15	FSM	ENSMUSG00000019734.17	ENSMUST00000038743.15	2310	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_12	9.74077271376478	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCGTTTTGAAACCCCG	5398	False	NA	-12	True	AATAAA	-16	NA	3680552	3668788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
transcript_115922.nic	chr7	+	537	4	ISM	ENSMUSG00000035632.17	ENSMUST00000143085.8	2963	17	-64	9806	-42	-549	5prime_fragment	FALSE	canonical	3	860	junction_1	130.279187388726	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGAGGCTGACCTAAAGA	2686	False	NA	NA	False	AAGAAA	-2	NA	3648224	3654301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266
transcript_115924.known	chr7	+	4333	1	FSM	ENSMUSG00000035632.17	ENSMUST00000206331.2	4333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTTGTGGATAGTCCAG	2728	False	NA	38	True	NA	NA	NA	3648266	3652599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3648300_3652600
transcript_115925.known	chr7	+	2963	17	FSM	ENSMUSG00000035632.17	ENSMUST00000143085.8	2963	17	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	81.2505528827343	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGGCCTCTCCTATCC	2750	False	NA	NA	False	AATAAA	-22	NA	3648288	3664107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
transcript_115928.known	chr7	-	2878	8	FSM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_4	25.6960252623964	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTGAGTATAACTG	7393	False	NA	-2	True	AATAAA	-15	NA	3696522	3680787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
transcript_115936.nic	chr7	-	4594	7	NIC	ENSMUSG00000035596.15	novel	2878	8	NA	NA	-28	0	intron_retention	FALSE	canonical	3	178	junction_3	25.2762514801718	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTGAGTATAACTG	7365	False	NA	-2	True	AATAAA	-15	NA	3696550	3680787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_3681849_3686807_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
transcript_115937.known	chr7	+	1375	6	FSM	ENSMUSG00000035585.17	ENSMUST00000205287.2	1375	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	529.055913869224	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGTTCTTTATTTT	2173	False	NA	NA	False	NA	NA	NA	3696761	3703886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3698711_3698833_3703526
transcript_115950.known	chr7	+	1779	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	380.27448967818	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTTACAACAATCCTTGA	1785	False	NA	18	True	AATAAA	-28	NA	3696373	3704023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
transcript_115952.nic	chr7	+	2584	5	NIC	ENSMUSG00000035585.17	novel	1779	5	NA	NA	220	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	477.15458710988	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	1493	False	NA	6	True	AATAAA	-16	NA	3696081	3704011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_3697414_3697596_3697844_3697976_3698227_3698350_3698621_3703526
transcript_115954.nic	chr7	+	1621	5	NIC	ENSMUSG00000035585.17	novel	1779	5	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	468.595241119668	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2100	False	NA	6	True	AATAAA	-16	NA	3696688	3704011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_3697058_3697596_3697844_3697976_3698227_3698350_3698621_3703526
transcript_115958.nic	chr7	+	1491	5	NIC	ENSMUSG00000035585.17	novel	1779	5	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	477.15458710988	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2037	False	NA	6	True	AATAAA	-16	NA	3696625	3704011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_3696865_3697596_3697844_3697976_3698227_3698350_3698621_3703526
transcript_115962.known	chr7	+	1319	4	FSM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_3	83.107694522763	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2933	False	NA	-2	True	AATAAA	-8	NA	3697521	3704003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3697844_3697976_3698227_3698350_3698621_3703526
transcript_115966.known	chr7	-	436	3	FSM	ENSMUSG00000035596.15	ENSMUST00000206448.2	436	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	93	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGCCATCTTTCTTC	8262	False	NA	NA	False	NA	NA	NA	3695653	3694699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_3694935_3695038_3695118_3695531
transcript_115967.known	chr7	-	2303	3	FSM	ENSMUSG00000035596.15	ENSMUST00000150684.3	2303	3	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	25.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATAAAATAAAAAGC	7978	False	NA	NA	False	NA	NA	NA	3695937	3692908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_3694935_3695038_3695118_3695739
transcript_115970.known	chr7	+	1365	5	FSM	ENSMUSG00000035585.17	ENSMUST00000038521.14	1365	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	497.531908524468	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2175	False	NA	6	True	AATAAA	-16	NA	3696763	3704011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698362_3698621_3703526
transcript_115971.known	chr7	-	3379	6	FSM	ENSMUSG00000035596.15	ENSMUST00000131688.8	3379	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	84.5614569410911	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCCTTCCTGTCTGACC	7964	False	NA	NA	False	NA	NA	NA	3695951	3686356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695745
transcript_115976.known	chr7	+	1347	5	FSM	ENSMUSG00000006333.15	ENSMUST00000108623.8	1347	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_4	5925.24712564801	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTATTGGTGTGCCTCTG	1309	False	NA	1	True	AATAAA	-16	NA	3707036	3709894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709006
transcript_115977.known	chr7	+	751	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	8441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1264	False	NA	3	True	AATAAA	-18	NA	3706991	3709896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
transcript_115989.known	chr7	+	378	3	FSM	ENSMUSG00000006333.15	ENSMUST00000128729.2	378	3	0	0	0	0	multi-exon	FALSE	canonical	3	8457	junction_1	2914.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTGGCCTGGAACTCAAA	1312	False	NA	NA	False	NA	NA	NA	3707039	3707876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3707064_3707325_3707448_3707644
transcript_115995.known	chr7	+	914	4	FSM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	0	0	0	0	multi-exon	FALSE	canonical	3	14286	junction_1	337.374503416538	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTTCCAGCTGAAAAAT	1323	False	NA	-37	True	NA	NA	NA	3707050	3709856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709649
transcript_115996.known	chr7	+	813	5	FSM	ENSMUSG00000006333.15	ENSMUST00000146927.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	7209.4740229437	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTATTGGTGTGCCTCT	1635	False	NA	0	True	AATAAA	-15	NA	3707362	3709893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709006_3709181_3709649
transcript_115998.known	chr7	+	4355	14	FSM	ENSMUSG00000030428.17	ENSMUST00000129423.8	4355	14	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_13	14.7692307692308	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATTTCCCTCCACCCGC	293	False	NA	NA	False	AATAAA	-25	NA	4122531	4139707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4122780_4125475_4125655_4127618_4127731_4128521_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4136864
transcript_116.known	SIRV4	+	1567	3	FSM	SIRV4C	SIRV409	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	1000	3403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4_+_1347_1678_1886_2389
transcript_116001.known	chr7	+	2512	14	FSM	ENSMUSG00000030428.17	ENSMUST00000119661.8	2512	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_13	14.8917196323819	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTGAGAGGATAAAAACT	290	False	NA	NA	False	NA	NA	NA	4122528	4138346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4122780_4125475_4125655_4127618_4127731_4128521_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4137349
transcript_116004.known	chr7	+	2882	13	FSM	ENSMUSG00000030428.17	ENSMUST00000079415.12	2882	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	19.0984292547843	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAATATGCTTACATGTG	345	False	NA	NA	False	NA	NA	NA	4122583	4138332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4122780_4125475_4125655_4127618_4127731_4128521_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136661_4136738_4136864
transcript_116008.nnic	chr7	+	3731	17	NNC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_8	110.212560961762	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTTTCTGCTTGGCCTG	45	False	NA	15	True	ATTAAA	-15	NA	4140000	4151171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146257_4146309_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
transcript_116012.nic	chr7	+	3680	16	NIC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	173	junction_15	69.6971225294767	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTTTCTGCTTGGCCTG	45	False	NA	15	True	ATTAAA	-15	NA	4140000	4151171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
transcript_116014.nic	chr7	+	3647	16	NIC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	127	junction_1	83.8505548911607	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTTTCTGCTTGGCCTG	49	False	NA	15	True	ATTAAA	-15	NA	4140004	4151171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_4140122_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
transcript_116018.known	chr7	+	5105	15	FSM	ENSMUSG00000035545.14	ENSMUST00000037472.13	5105	15	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_8	58.4889663412978	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTTGGCCTGTTTTA	92	False	NA	20	True	ATTAAA	-20	NA	4140047	4151176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
transcript_116026.known	chr7	+	3620	16	FSM	ENSMUSG00000035545.14	ENSMUST00000121270.8	3620	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	106.117209830556	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTTTCTGCTTGGCCTG	109	False	NA	15	True	ATTAAA	-15	NA	4140064	4151171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4140155_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
transcript_116027.known	chr7	-	421	3	FSM	ENSMUSG00000063838.7	ENSMUST00000143825.2	421	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	67.5	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCTGTGCCTTCACC	NA	False	NA	NA	False	NA	NA	NA	4167538	4154549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4154787_4167083_4167187_4167457
transcript_116031.known	chr7	-	3034	7	FSM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	6.10100173924104	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTGTCATTGTCCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	4448648	4428665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448445
transcript_116038.known	chr7	-	2667	22	FSM	ENSMUSG00000019254.17	ENSMUST00000124248.8	2667	22	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_7	53.3921869151542	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTTGTCTCCTGATTG	8480	False	NA	-3	True	AATAAA	-17	NA	4504360	4484518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4485158_4485235_4485287_4485377_4485429_4485582_4485688_4485789_4485893_4485971_4486013_4486101_4486188_4486339_4486401_4486472_4486557_4486641_4486733_4486939_4487072_4487448_4487517_4487617_4487771_4488009_4488084_4488187_4488316_4488387_4488462_4489356_4489432_4489509_4489655_4492731_4492892_4500215_4500335_4500414_4500546_4504264
transcript_11604.nnic	chr10	-	2962	18	NIC	ENSMUSG00000020167.15	novel	2950	19	NA	NA	-345	0	combination_of_known_splicesites	FALSE	canonical	3	76	junction_1	294.083868648568	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCATGTCTGTTTCTGTT	NA	False	NA	-26	True	TATAAA	-2	NA	80269826	80245453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80246109_80249038_80249172_80250995_80251123_80251198_80251355_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770_80266903_80269153
transcript_116051.nic	chr7	-	3112	21	NIC	ENSMUSG00000019254.17	novel	2983	22	NA	NA	-44	0	intron_retention	FALSE	canonical	3	198	junction_15	26.2200305110425	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTTGTCTCCTGATTG	9897	False	NA	-3	True	AATAAA	-17	NA	4504723	4484518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_4485158_4485235_4485287_4485377_4485429_4485582_4485688_4485789_4485893_4485971_4486013_4486101_4486185_4486339_4486401_4486472_4486733_4486939_4487072_4487448_4487517_4487617_4487771_4488009_4488084_4488187_4488316_4488387_4488462_4489356_4489432_4489509_4489655_4492731_4492892_4500215_4500335_4500414_4500546_4504264
transcript_116073.known	chr7	-	1027	14	FSM	ENSMUSG00000064179.14	ENSMUST00000071798.13	1027	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	20.2312079507856	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTGGGAGTACAACTTG	9181	False	NA	82	True	ATTAAA	-15	NA	4518974	4507568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516579_4516613_4516809_4516837_4517211_4517226_4517335_4517379_4518929
transcript_116074.known	chr7	-	885	13	FSM	ENSMUSG00000064179.14	ENSMUST00000163710.8	885	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	20.3570558338435	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	9197	False	NA	-11	True	AATAAA	-19	NA	4518958	4507661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516809_4516837_4517211_4517226_4517335_4517379_4518929
transcript_116077.known	chr7	-	485	4	FSM	ENSMUSG00000064179.14	ENSMUST00000086502.5	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	18.0800688297608	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGTCGAGTTGGAGGCC	7330	False	NA	NA	False	GGGGCT	-3	NA	4511024	4507784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4510686
transcript_116080.known	chr7	-	2224	12	FSM	ENSMUSG00000055809.8	ENSMUST00000094897.5	2224	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_9	6.85022772137618	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGTCTCCAGTGCCAAGA	NA	False	NA	1	True	AATAAA	-35	NA	4535452	4525931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772_4533867_4534736_4534880_4535185_4535275_4535376
transcript_116085.known	chr7	-	912	8	FSM	ENSMUSG00000035458.16	ENSMUST00000098859.10	912	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	4.77664385637157	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTGTGTGTCTGCTAAC	6917	False	NA	-2	True	AATAAA	-17	NA	4525527	4521303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303
transcript_116090.nnic	chr7	-	3513	24	Fusion	ENSMUSG00000045282.8_ENSMUSG00000052296.8	novel	2731	7	NA	NA	-2	657	multi-exon	FALSE	canonical	2	11	junction_1	66.4640841368572	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAGGTGTGGGAGAGATT	NA	False	NA	NA	False	NA	NA	NA	4662020	4633836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_-_4634236_4635339_4635397_4635487_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4661479
transcript_116093.known	chr7	-	3862	24	FSM	ENSMUSG00000052296.8	ENSMUST00000064099.8	3862	24	0	0	0	0	multi-exon	TRUE	canonical	3	244	junction_23	30.5598053220771	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTGTGGGACTGTGA	NA	False	NA	-3	True	AATAAA	-17	NA	4662018	4634493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4635244_4635339_4635397_4635487_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4661479
transcript_116102.nic	chr7	-	1547	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_7	161.654708864169	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688108	4663519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
transcript_116103.nic	chr7	-	1737	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	-147	0	combination_of_known_junctions	FALSE	canonical	3	210	junction_7	116.504882966775	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688214	4663519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687566_4687892
transcript_116104.known	chr7	-	1593	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688067	4663519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
transcript_116127.nnic	chr7	+	2316	9	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	226.026789064925	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	607	False	NA	16	True	ATTAAA	-17	NA	4743137	4750513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748707_4748938_4749075_4749261_4749375
transcript_116131.known	chr7	+	2177	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	0	0	0	0	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	653	False	NA	16	True	ATTAAA	-17	NA	4743183	4750513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_116133.nnic	chr7	+	2215	9	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_6	216.601448517779	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	579	False	NA	16	True	ATTAAA	-17	NA	4743109	4750513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748836_4748938_4749075_4749261_4749375
transcript_116139.known	chr7	+	2189	9	FSM	ENSMUSG00000059851.16	ENSMUST00000098853.9	2189	9	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	214.33585648463	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	583	False	NA	16	True	ATTAAA	-17	NA	4743113	4750513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4743181_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_116144.known	chr7	+	2774	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108582.10	2774	9	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	203.174647778703	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	635	False	NA	16	True	ATTAAA	-17	NA	4743165	4750513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4743818_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_116150.nic	chr7	+	2560	8	NIC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	18	0	intron_retention	FALSE	canonical	3	456	junction_1	90.2970155675599	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	601	False	NA	16	True	ATTAAA	-17	NA	4743131	4750513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_4743239_4744778_4744981_4745120_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_116169.known	chr7	-	490	4	FSM	ENSMUSG00000051811.15	ENSMUST00000183334.8	490	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	338.542299999408	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATTTGTTTCTTTTCTC	NA	False	NA	-12	True	AATAAA	-14	NA	4756022	4754793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4754975_4755059_4755172_4755722_4755849_4755951
transcript_116170.known	chr7	-	465	4	FSM	ENSMUSG00000051811.15	ENSMUST00000182048.2	465	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	332.524017511852	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGGTCACCCCCTCCCT	NA	False	NA	-72	True	NA	NA	NA	4756037	4754853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4754975_4755059_4755161_4755722_4755880_4755951
transcript_116171.known	chr7	-	423	4	FSM	ENSMUSG00000051811.15	ENSMUST00000182738.8	423	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	362.510076488303	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756008	4754792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4754975_4755102_4755161_4755722_4755849_4755951
transcript_116178.known	chr7	-	391	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182173.2	391	3	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAACTTTCCCGGGCAAAA	NA	False	NA	NA	False	NA	NA	NA	4756001	4754945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4755161_4755722_4755849_4755951
transcript_116179.nic	chr7	-	1132	2	NIC	ENSMUSG00000051811.15	novel	490	4	NA	NA	-6	0	intron_retention	FALSE	canonical	3	803	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATTTGTTTCTTTTCTC	NA	False	NA	-12	True	AATAAA	-14	NA	4756028	4754793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_4755849_4755951
transcript_116180.known	chr7	-	435	4	FSM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	378.537830195198	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756022	4754790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4754975_4755106_4755161_4755722_4755849_4755951
transcript_116181.known	chr7	-	585	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182111.8	585	3	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	77.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756022	4754790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4754975_4755059_4755161_4755722
transcript_116182.known	chr7	-	1375	2	FSM	ENSMUSG00000030431.9	ENSMUST00000168578.3	1375	2	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCACCTCCAGTTCCTTC	162	False	NA	NA	False	NA	NA	NA	4792655	4787555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4788279_4792003
transcript_116184.known	chr7	+	1106	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	0	0	0	0	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCATGTCCTTTATATT	2693	False	NA	NA	False	NA	NA	NA	4795872	4798065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
transcript_116186.known	chr7	+	772	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	0	0	0	0	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAGTCCACTGACTTC	2809	False	NA	-19	True	NA	NA	NA	4795988	4797525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
transcript_116187.known	chr7	-	1238	4	FSM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	0	0	0	0	multi-exon	FALSE	canonical	3	9878	junction_1	292.246851518066	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTATGCCTGAAGTGTC	NA	False	NA	-25	True	AATAAA	-15	NA	4815589	4811012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4811484_4813420_4813612_4814407_4814556_4815161
transcript_116194.known	chr7	-	5211	5	FSM	ENSMUSG00000053550.14	ENSMUST00000117452.8	5211	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	3.08220700148449	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAGCCTCAAGGTTTTC	5830	False	NA	NA	False	AATAAA	-16	NA	4839173	4828550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4833275_4833757_4833908_4834671_4834723_4837228_4837384_4839042
transcript_116197.known	chr7	-	1080	6	FSM	ENSMUSG00000052605.13	ENSMUST00000064547.13	1080	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.13541565040626	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCGAACCATTATTGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	4869192	4847957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_4848365_4852448_4852567_4853753_4853825_4854022_4854233_4854391_4854533_4869059
transcript_116201.known	chr7	+	3523	3	FSM	ENSMUSG00000074406.6	ENSMUST00000116354.4	3523	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	2	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGTTTTGTTTTCATG	2971	False	NA	8	True	AATAAA	-14	NA	4918215	4925001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_4918405_4920408_4920516_4921774
transcript_116205.known	chr7	+	1534	5	FSM	ENSMUSG00000035228.16	ENSMUST00000045543.8	1534	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.54835134966506	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCCCCAGGTCTTACTA	532	False	NA	NA	False	AATAAA	-1	NA	5060195	5063784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_5060659_5060797_5060903_5060990_5061168_5062494_5062705_5063205
transcript_116208.nnic	chr7	-	2572	4	NNC	ENSMUSG00000061374.15	novel	2637	3	NA	NA	-93	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.586220720504	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	4179	False	NA	-4	True	AATAAA	-14	NA	5016330	5010057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_5010959_5011001_5012205_5015676_5016022_5016207
transcript_116211.known	chr7	-	2653	3	FSM	ENSMUSG00000061374.15	ENSMUST00000165320.3	2653	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	217.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2813	False	NA	-4	True	AATAAA	-14	NA	5017696	5010057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_5012205_5015676_5016022_5017535
transcript_116212.nnic	chr7	-	2692	4	NNC	ENSMUSG00000061374.15	novel	2546	3	NA	NA	-170	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.145241191992	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2643	False	NA	-4	True	AATAAA	-14	NA	5017866	5010057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_5010959_5011001_5012205_5015676_5016022_5017623
transcript_116218.known	chr7	+	2751	3	FSM	ENSMUSG00000074405.9	ENSMUST00000085427.6	2751	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGACTAGGCTGGTTT	2948	False	NA	-84	True	NA	NA	NA	5023568	5036137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_5023655_5031989_5034279_5035761
transcript_116219.known	chr7	-	2306	3	FSM	ENSMUSG00000061374.15	ENSMUST00000208944.2	2306	3	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_2	122.5	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGTGACCTGGTGGAG	4272	False	NA	NA	False	NA	NA	NA	5016237	5010273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_5012205_5015676_5016022_5016207
transcript_116220.known	chr7	-	2178	3	FSM	ENSMUSG00000061374.15	ENSMUST00000207030.2	2178	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	219.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTACTGAAAGAAGATCAG	3241	False	NA	NA	False	NA	NA	NA	5017268	5010557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_5012205_5015676_5016022_5017082
transcript_116221.known	chr7	-	2637	3	FSM	ENSMUSG00000061374.15	ENSMUST00000167804.9	2637	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	221	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	3257	False	NA	-4	True	AATAAA	-14	NA	5017252	5010057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_5012205_5015676_5016022_5017107
transcript_116223.known	chr7	-	2546	3	FSM	ENSMUSG00000061374.15	ENSMUST00000077385.15	2546	3	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	130	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2832	False	NA	-4	True	AATAAA	-14	NA	5017677	5010057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_5012205_5015676_5016022_5017623
transcript_116225.known	chr7	+	1142	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCACTGTGTGTTCAGTC	2940	False	NA	5	True	AATAAA	-15	NA	5018468	5021486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_5018560_5020435
transcript_116227.known	chr7	+	1096	2	FSM	ENSMUSG00000055633.7	ENSMUST00000069324.7	1096	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGGTTCTTACTTGCA	2919	False	NA	4	True	AATAAA	-15	NA	5054536	5056722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_5054714_5055803
transcript_116228.known	chr7	-	741	2	FSM	ENSMUSG00000061374.15	ENSMUST00000209060.2	741	2	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGGATTCCGAGACTCCA	3866	False	NA	NA	False	NA	NA	NA	5016643	5015716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_5016022_5016207
transcript_116232.known	chr7	-	2153	2	FSM	ENSMUSG00000043290.7	ENSMUST00000062428.5	2153	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGAGTGTCTTGGTTTTTTC	NA	False	NA	NA	False	AATAAA	-41	NA	5041445	5037437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_5039479_5041333
transcript_116233.known	chr7	+	2492	4	FSM	ENSMUSG00000035228.16	ENSMUST00000207974.2	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0.942809041582063	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCCCCAGGTCTTACTA	75	False	NA	NA	False	AATAAA	-1	NA	5059738	5063784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_5060659_5060797_5060903_5060990_5061168_5062494
transcript_116245.known	chr7	+	2088	12	FSM	ENSMUSG00000030435.17	ENSMUST00000209099.2	2088	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	525.567461915969	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	35	False	NA	28	True	ATTAAA	-18	NA	5065243	5082932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078239_5078466_5078716_5082180
transcript_116249.nic	chr7	+	2605	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	31.3495356971958	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1269	False	NA	19	True	AATAAA	-13	NA	5083194	5101175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_5083477_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
transcript_116250.known	chr7	+	2565	12	FSM	ENSMUSG00000035203.17	ENSMUST00000098845.10	2565	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	31.9772646507711	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCCCTTAAATTC	1308	False	NA	21	True	AATAAA	-15	NA	5083233	5101177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_5083477_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
transcript_116254.nic	chr7	+	2602	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-103	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	43.1135345280822	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1205	False	NA	19	True	AATAAA	-13	NA	5083130	5101175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_5083477_5085016_5085121_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
transcript_116255.nic	chr7	+	2544	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-48	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_2	43.5085248605051	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1260	False	NA	19	True	AATAAA	-13	NA	5083185	5101175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_5083477_5085016_5085121_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
transcript_116260.nic	chr7	+	2746	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	45.4569090294577	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1289	False	NA	19	True	AATAAA	-13	NA	5083214	5101175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_5083638_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
transcript_116261.nic	chr7	+	2743	12	NIC	ENSMUSG00000035203.17	novel	2565	12	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	45.8262979824561	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1289	False	NA	19	True	AATAAA	-13	NA	5083214	5101175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_5083638_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
transcript_116276.known	chr7	+	2334	11	FSM	ENSMUSG00000035203.17	ENSMUST00000045277.7	2334	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	46.9447547655753	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1366	False	NA	19	True	AATAAA	-13	NA	5083291	5101175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_5083477_5086728_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
transcript_116282.nnic	chr7	+	2478	11	NIC	ENSMUSG00000035203.17	novel	2334	11	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	43.976812071818	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1292	False	NA	19	True	AATAAA	-13	NA	5083217	5101175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_5083477_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
transcript_116283.nnic	chr7	+	2475	11	NIC	ENSMUSG00000035203.17	novel	2334	11	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	44.445584707595	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	1292	False	NA	19	True	AATAAA	-13	NA	5083217	5101175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_5083477_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
transcript_116291.known	chr7	+	2127	10	FSM	ENSMUSG00000035203.17	ENSMUST00000208634.2	2127	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_7	25.486864203224	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	2819	False	NA	19	True	AATAAA	-13	NA	5086753	5101175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
transcript_116292.known	chr7	+	3615	10	FSM	ENSMUSG00000034690.14	ENSMUST00000037728.13	3615	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	4.84067131350933	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGATGACTTCTAATTTC	2977	False	NA	21	True	AATAAA	-17	NA	6048159	6108149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6048221_6063527_6063871_6068377_6069951_6075560_6075720_6076110_6076276_6087542_6087711_6095465_6095637_6101828_6102000_6103751_6103923_6107516
transcript_116297.known	chr7	-	696	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207315.2	696	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	22	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCAAGACCTTCTCGCAGA	10002	False	NA	NA	False	NA	NA	NA	6158594	6135953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_6136171_6146060_6146150_6158204
transcript_116298.known	chr7	-	1897	3	FSM	ENSMUSG00000046792.9	ENSMUST00000094870.3	1897	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	59	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCACTGCCTGTTTCTTGA	9626	False	NA	-1	True	AATAAA	-20	NA	6158970	6134489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_6136171_6146060_6146150_6158843
transcript_116299.known	chr7	-	576	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	37	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	9600	False	NA	-10	True	AATAAA	-16	NA	6158996	6145284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_6145619_6146060_6146150_6158843
transcript_116300.known	chr7	-	880	2	FSM	ENSMUSG00000046792.9	ENSMUST00000207957.2	880	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCCACCTGTACACTG	9671	False	NA	-77	True	NA	NA	NA	6158925	6145351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_6146150_6158843
transcript_116307.known	chr7	+	1648	5	FSM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	66.2740522376593	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGACTCTCCGGTGTTG	2967	False	NA	15	True	AATAAA	-24	NA	6175511	6193420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6175574_6176980_6177101_6186860_6187202_6191132_6191242_6192404
transcript_116311.known	chr7	+	2467	4	FSM	ENSMUSG00000044876.16	ENSMUST00000054680.12	2467	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	90.9004339312464	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCGGTTCTCGTTCTTA	2956	False	NA	NA	False	NA	NA	NA	6175500	6194348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6175574_6186860_6187202_6191132_6191242_6192404
transcript_116314.known	chr7	+	1980	6	FSM	ENSMUSG00000058028.15	ENSMUST00000072662.12	1980	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.49799919935936	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATTGATTGACTTATT	3080	False	NA	NA	False	ATTAAA	-22	NA	6225276	6242422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6225336_6227584_6227759_6233070_6233538_6234335_6234537_6236813_6236968_6241497
transcript_116315.nic	chr7	+	1858	5	NIC	ENSMUSG00000058028.15	novel	1980	6	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATTGATTGACTTATT	3028	False	NA	NA	False	ATTAAA	-22	NA	6225224	6242422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_6225336_6233070_6233538_6234335_6234537_6236813_6236968_6241497
transcript_116319.nic	chr7	+	979	12	ISM	ENSMUSG00000053367.16	ENSMUST00000121024.8	957	16	7588	0	-238	0	3prime_fragment	FALSE	canonical	0	0	junction_4	28.8595916994307	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	2974	False	NA	6	True	AATAAA	-21	NA	6263296	6284858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_6263544_6266905_6266933_6269287_6269345_6269828_6269847_6271800_6271807_6272881_6272891_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
transcript_116321.known	chr7	+	684	11	FSM	ENSMUSG00000053367.16	ENSMUST00000155248.2	684	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	31.3304963254654	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	3212	False	NA	6	True	AATAAA	-21	NA	6263534	6284858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6263544_6266905_6266933_6269828_6269847_6271800_6271807_6272881_6272891_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
transcript_116329.nnic	chr7	+	3631	6	NNC	ENSMUSG00000054893.16	novel	3498	5	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	18.2822318112423	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTCTTTTACATGTTCT	2913	False	NA	NA	False	AATAAA	-37	NA	6289518	6310681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_6289654_6290868_6290970_6292356_6292437_6293534_6293662_6296847_6296941_6307586
transcript_116330.known	chr7	+	3672	5	FSM	ENSMUSG00000054893.16	ENSMUST00000086327.12	3672	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	11.1214882097676	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCAACTGGAGGTGTCCC	2972	False	NA	NA	False	NA	NA	NA	6289577	6310882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6289654_6292356_6292437_6293534_6293662_6296847_6296941_6307586
transcript_116335.known	chr7	-	2550	5	FSM	ENSMUSG00000030443.17	ENSMUST00000062765.14	2550	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.61248608016091	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATTATTTTAATCAT	NA	False	NA	NA	False	AATAAA	-22	NA	6334284	6318658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_6320779_6326645_6326742_6328451_6328579_6332253_6332316_6334139
transcript_116336.known	chr7	-	577	5	FSM	ENSMUSG00000030443.17	ENSMUST00000135435.2	577	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	9.23309265630969	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCTGCATTGACCTT	NA	False	NA	NA	False	NA	NA	NA	6334203	6326194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_6326423_6326645_6326742_6328451_6328579_6332253_6332316_6334139
transcript_116337.known	chr7	-	410	4	FSM	ENSMUSG00000030443.17	ENSMUST00000123868.8	410	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.23609564462324	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAACAGGTTGGGACGTC	NA	False	NA	NA	False	AATGAA	-9	NA	6334249	6320627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_6320779_6326645_6326745_6332253_6332316_6334151
transcript_116343.known	chr7	+	2950	5	FSM	ENSMUSG00000109398.3	ENSMUST00000207173.3	2950	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2.6809513236909	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGCATGGTGGTGCATG	3012	False	NA	NA	False	AATGAA	-40	NA	6346757	6358955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6346862_6349343_6349432_6351435_6351563_6352716_6352813_6356420
transcript_116350.known	chr7	+	3883	5	FSM	ENSMUSG00000055150.16	ENSMUST00000207347.2	3883	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	5.71729831301464	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGTGACAATGCTG	2954	False	NA	NA	False	NA	NA	NA	6366278	6384708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6366347_6374304_6374396_6376125_6376253_6378517_6378614_6381207
transcript_116357.known	chr7	+	4447	7	FSM	ENSMUSG00000062861.9	ENSMUST00000081022.9	4447	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	4.21966296705739	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTTTTGTGTGTGTGTG	2959	False	NA	NA	False	NA	NA	NA	6386293	6399914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6386601_6387173_6387266_6392431_6392559_6392752_6392849_6393398_6393560_6395180_6395296_6396365
transcript_116362.known	chr7	-	8694	9	FSM	ENSMUSG00000002265.18	ENSMUST00000051209.11	8694	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	8.98262211161084	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGTCTCTTCCTTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	6733420	6706890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_6714731_6714849_6714943_6715671_6715775_6719052_6719157_6720111_6720196_6720797_6720888_6721424_6721556_6729488_6729574_6733256
transcript_116371.nnic	chr7	+	3074	6	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-206	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	8.7086164228309	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATAGTGGAGCTG	2948	False	NA	30	True	AATAAA	-41	NA	6980038	6994086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_6980472_6984231_6984357_6985317_6985372_6987994_6988152_6989101_6989202_6991881
transcript_116380.known	chr7	+	2801	5	FSM	ENSMUSG00000109176.2	ENSMUST00000208781.2	2801	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	13.3111795119741	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATAGTGGAGCTG	3154	False	NA	30	True	AATAAA	-41	NA	6980244	6994086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6980472_6984231_6984357_6987998_6988143_6989101_6989202_6991881
transcript_116388.nnic	chr7	+	1162	8	NNC	ENSMUSG00000070837.7	novel	1401	7	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_1	154.398107210562	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2860	False	NA	20	True	ATTAAA	-21	NA	6998447	7006090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_6998525_6998614_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_116394.known	chr7	+	1401	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2711	False	NA	20	True	ATTAAA	-21	NA	6998298	7006090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_116395.known	chr7	+	1154	7	FSM	ENSMUSG00000070837.7	ENSMUST00000086248.8	1154	7	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	169.856802434678	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2794	False	NA	20	True	ATTAAA	-21	NA	6998381	7006090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6998548_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_116396.known	chr7	+	1320	7	FSM	ENSMUSG00000070837.7	ENSMUST00000207711.2	1320	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	160.229696234985	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2914	False	NA	20	True	ATTAAA	-21	NA	6998501	7006090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_6998834_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_116397.nic	chr7	+	1076	7	NIC	ENSMUSG00000070837.7	novel	1401	7	NA	NA	53	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	173.916327263684	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2849	False	NA	20	True	ATTAAA	-21	NA	6998436	7006090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_6998525_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_116398.nnic	chr7	+	1290	7	NNC	ENSMUSG00000070837.7	novel	1401	7	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	2	27	junction_1	167.377484215238	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2876	False	NA	20	True	ATTAAA	-21	NA	6998463	7006090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_6998712_6999212_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_1164.known	chr1	-	2605	4	FSM	ENSMUSG00000058407.13	ENSMUST00000194747.2	2605	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	99.432836069826	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	-5	True	NA	NA	NA	38036305	38026476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38034923_38036189
transcript_116405.known	chr7	-	2042	5	FSM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	2.54950975679639	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAATGACTCTTGAGGT	6236	False	NA	-5	True	AATAAA	-21	NA	7124487	7117688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370_7122410_7124221
transcript_116406.known	chr7	-	3028	4	FSM	ENSMUSG00000063535.8	ENSMUST00000032622.9	3028	4	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	4.32049379893857	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGTGGTTGCGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	7139754	7133673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_7136168_7137165_7137250_7138290_7138418_7139431
transcript_116407.known	chr7	+	2725	4	FSM	ENSMUSG00000034538.9	ENSMUST00000051435.8	2725	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	9.89949493661167	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAATCAAGAGTTTCTA	2969	False	NA	NA	False	AATAAA	-29	NA	7174328	7186561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_7174558_7175135_7175175_7177553_7177681_7184231
transcript_116409.known	chr7	-	2777	5	FSM	ENSMUSG00000066838.8	ENSMUST00000074455.9	2777	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	7.29725975966321	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATGACTATTGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	7212997	7205115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7212716
transcript_116411.known	chr7	-	2445	13	FSM	ENSMUSG00000000605.10	ENSMUST00000210061.2	2445	13	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	11.9335544672249	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAGAAAGCCTTA	NA	False	NA	NA	False	AATGAA	-44	NA	7301805	7287053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294726_7294818_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690
transcript_116414.known	chr7	-	4607	13	FSM	ENSMUSG00000000605.10	ENSMUST00000000619.8	4607	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	13.5592834127275	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTCTTTGGTGTCTTTT	NA	False	NA	-1	True	ATTAAA	-21	NA	7302532	7285307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690_7301836_7302239
transcript_116420.known	chr7	-	915	5	FSM	ENSMUSG00000092574.5	ENSMUST00000172930.4	915	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6.74536878161602	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATACTATAGTAGTTTG	NA	False	NA	NA	False	NA	NA	NA	8095837	8089385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259_8093299_8095759
transcript_116422.known	chr7	-	825	5	FSM	ENSMUSG00000092490.8	ENSMUST00000174729.2	825	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	6.67083203206317	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTTACATGGGCTAAATG	NA	False	NA	NA	False	NA	NA	NA	8865651	8859275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_8859771_8860940_8861028_8861801_8861928_8863073_8863113_8865573
transcript_116423.known	chr7	-	4199	4	FSM	ENSMUSG00000030393.9	ENSMUST00000032551.8	4199	4	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_1	5.43650214343336	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAATATGTATTAAGACTT	NA	False	NA	-6	True	NA	NA	NA	10229321	10221155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_10224936_10226205_10226333_10228416_10228456_10229068
transcript_116424.known	chr7	-	2279	4	FSM	ENSMUSG00000110097.2	ENSMUST00000210573.2	2279	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGTAGTTTGGAGGA	NA	False	NA	NA	False	NA	NA	NA	10532984	10528168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_10529709_10529792_10529953_10531798_10532271_10532877
transcript_116425.known	chr7	+	2276	4	FSM	ENSMUSG00000054272.7	ENSMUST00000131379.4	2276	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	11.2644968324772	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGTAGTTTGGAGGA	NA	False	NA	NA	False	NA	NA	NA	10739671	10744474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_10739779_10740385_10740858_10742693_10742854_10742937
transcript_116426.known	chr7	-	1745	4	FSM	ENSMUSG00000095936.4	ENSMUST00000210521.2	1745	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	9.89949493661167	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTTCTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	11044609	11040304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_11041336_11041419_11041580_11043399_11043872_11044527
transcript_116428.known	chr7	+	1829	4	FSM	ENSMUSG00000070828.11	ENSMUST00000145237.8	1829	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	4.49691252107735	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTTTTGTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	11131841	11136245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_11131924_11132578_11133051_11134886_11135047_11135130
transcript_116429.known	chr7	-	2591	4	FSM	ENSMUSG00000034071.16	ENSMUST00000080348.12	2591	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.86744175568088	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAAAAGTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	12156678	12149079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12151146_12152469_12152594_12155734_12155774_12156316
transcript_116430.known	chr7	+	4748	7	FSM	ENSMUSG00000030386.20	ENSMUST00000098822.10	4748	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	11.513277359447	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATGACCTTTTTATTG	NA	False	NA	NA	False	AATAAA	-17	NA	12212219	12230162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12223496_12223624_12223875_12223972_12226283
transcript_116434.known	chr7	+	3509	4	FSM	ENSMUSG00000030386.20	ENSMUST00000123589.8	3509	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	4.98887651569859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTTGTAATGTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	12212231	12217828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861
transcript_116441.known	chr7	-	3709	7	FSM	ENSMUSG00000070822.6	ENSMUST00000211392.2	3709	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	11.5854314646552	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGCCTCATTGTTTTG	NA	False	NA	-1	True	AATAAA	-20	NA	12514581	12502018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12508039_12509586_12514498
transcript_116444.known	chr7	-	3626	6	FSM	ENSMUSG00000070822.6	ENSMUST00000046245.6	3626	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	12.3838604643302	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGCCTCATTGTTTTG	NA	False	NA	-1	True	AATAAA	-20	NA	12509585	12502018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12508039
transcript_116445.known	chr7	-	6727	2	FSM	ENSMUSG00000057894.11	ENSMUST00000072222.8	6727	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGATTTTTTAAAAATTG	NA	False	NA	-12	True	NA	NA	NA	12552785	12538908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12545594_12552743
transcript_116449.nnic	chr7	+	3478	8	NNC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	106.478320108186	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGGACTATAGCGTGT	NA	False	NA	27	True	NA	NA	NA	12568916	12584504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_12569208_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
transcript_116450.known	chr7	+	3591	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGGACTATAGCGTGT	NA	False	NA	27	True	NA	NA	NA	12568687	12584504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
transcript_116451.known	chr7	+	3834	4	FSM	ENSMUSG00000060397.7	ENSMUST00000144578.2	3834	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	3.55902608401044	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTACACGGTGTGTTTGGTT	NA	False	NA	NA	False	CATAAA	-41	NA	12615103	12627349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12615288_12618569_12618697_12618949_12619046_12623922
transcript_116453.known	chr7	+	2620	3	FSM	ENSMUSG00000054715.12	ENSMUST00000055528.11	2620	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTCCTTGTCTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	12631741	12642166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12631871_12637527_12638013_12640160
transcript_116456.known	chr7	+	2087	2	FSM	ENSMUSG00000054715.12	ENSMUST00000119989.3	2087	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTCTGTTGTCTTATG	NA	False	NA	NA	False	NA	NA	NA	12631793	12642170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12631871_12640160
transcript_116457.known	chr7	+	2995	2	FSM	ENSMUSG00000054715.12	ENSMUST00000117189.2	2995	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGGCTTCTCCAACATC	NA	False	NA	30	True	AATAAA	-41	NA	12631762	12643010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12631908_12640160
transcript_116465.known	chr7	+	761	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	10013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	38	True	AATAAA	-24	NA	12656216	12660613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
transcript_116470.known	chr7	+	794	6	FSM	ENSMUSG00000012848.16	ENSMUST00000108539.8	794	6	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	6466.78878578851	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTCCTGTGTGCTTGTCT	NA	False	NA	37	True	AATAAA	-23	NA	12656216	12660612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12656350_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
transcript_116471.known	chr7	+	652	6	FSM	ENSMUSG00000012848.16	ENSMUST00000137329.4	652	6	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_1	6589.62965271949	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAAGAAGAAAGATGAACT	NA	False	NA	-56	True	NA	NA	NA	12656363	12660519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12656448_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
transcript_116475.known	chr7	+	1248	5	FSM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_4	1606.02496478106	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTCCTGTGTGCTTGTC	NA	False	NA	36	True	AATAAA	-22	NA	12656257	12660611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12660422_12660498
transcript_116479.known	chr7	+	4315	4	FSM	ENSMUSG00000004500.10	ENSMUST00000038701.8	4315	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.816496580927726	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGGAGTCAGCACAGACA	NA	False	NA	NA	False	ATTAAA	-20	NA	12699764	12707749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12700227_12702721_12702849_12703290_12703408_12704140
transcript_116483.known	chr7	+	4310	4	FSM	ENSMUSG00000004500.10	ENSMUST00000128293.2	4310	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.63299316185545	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGGATGTGCAGAGACA	NA	False	NA	NA	False	AAAACA	-14	NA	12699793	12707726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12700227_12702721_12702896_12703290_12703408_12704140
transcript_116485.known	chr7	+	4595	3	FSM	ENSMUSG00000004500.10	ENSMUST00000124387.2	4595	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAATTAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	12699771	12708163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12700227_12703290_12703408_12704140
transcript_116487.nic	chr7	+	2265	6	NIC	ENSMUSG00000033961.17	novel	4615	6	NA	NA	-38	-176	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	4.88262224629348	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGGTAGATTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	12711736	12717147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
transcript_116489.nic	chr7	+	3196	6	NIC	ENSMUSG00000033961.17	novel	4615	6	NA	NA	-38	-158	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	4.88262224629348	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTAAGACTTTAAATACT	NA	False	NA	NA	False	NA	NA	NA	12711736	12718078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
transcript_11649.known	chr10	-	5250	15	FSM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_13	35.2049393566022	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAAAGCCCAGGTCTGT	9421	False	NA	NA	False	AATAAA	-14	NA	80397394	80376758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380255_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
transcript_116490.nic	chr7	+	3354	6	NIC	ENSMUSG00000033961.17	novel	4615	6	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	4.88262224629348	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAGAAAAAAAATAAGTA	NA	False	NA	NA	False	NA	NA	NA	12711736	12718236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
transcript_116491.nic	chr7	+	3385	6	NIC	ENSMUSG00000033961.17	novel	4615	6	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	4.88262224629348	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAATTCTGCAGATGGG	NA	False	NA	NA	False	NA	NA	NA	12711736	12718267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
transcript_116495.known	chr7	+	4615	6	FSM	ENSMUSG00000033961.17	ENSMUST00000045810.15	4615	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	10.7962956610126	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATCTTTTGGTGGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	12711774	12719641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12712040_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
transcript_116500.known	chr7	+	2594	5	FSM	ENSMUSG00000033961.17	ENSMUST00000108535.8	2594	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	5.2618912949623	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAGTTTCCTGACTACAC	NA	False	NA	NA	False	NA	NA	NA	12711774	12717323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772
transcript_116513.known	chr7	-	2288	10	FSM	ENSMUSG00000030382.16	ENSMUST00000032539.14	2288	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGTGGATTTGAAC	NA	False	NA	NA	False	AATAAA	-20	NA	12732077	12722272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12722580_12722659_12722791_12722936_12723035_12723280_12723480_12724893_12724985_12725071_12725267_12727241_12727367_12728806_12728966_12730157_12730368_12731304
transcript_11652.nic	chr10	-	4527	15	NIC	ENSMUSG00000047417.19	novel	5250	15	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	98.8862467480608	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGATTTCATAGTGTGTG	9429	False	NA	-5	True	AATAAA	-14	NA	80397386	80377497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380279_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
transcript_116538.known	chr7	+	3245	17	FSM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	0	0	0	0	multi-exon	FALSE	canonical	3	3307	junction_7	380.550172242439	19448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	58	True	AATAAA	-19	NA	12758078	12764962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
transcript_11665.nic	chr10	-	1509	2	ISM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	-190	9119	-190	-2717	5prime_fragment	FALSE	canonical	3	427	junction_1	0	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGACCCAGCCAGGCC	9231	False	NA	NA	False	AAAAAG	-4	NA	80397584	80385877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_80386900_80397097
transcript_11666.nic	chr10	-	1261	2	ISM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	-1	9178	-1	-2776	5prime_fragment	FALSE	canonical	3	427	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGACATCAGCCAGCCTC	9420	False	NA	NA	False	AAAAAG	-8	NA	80397395	80385936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_80386900_80397097
transcript_11667.known	chr10	-	2338	12	FSM	ENSMUSG00000047417.19	ENSMUST00000182260.8	2338	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	107.352281748895	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGATTTCATAGTGTGTG	3899	False	NA	-5	True	AATAAA	-14	NA	80383755	80377497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380279_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606
transcript_11670.known	chr10	-	2674	2	FSM	ENSMUSG00000035397.9	ENSMUST00000038558.9	2674	2	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	0	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCCTTCTGTCTGTCTG	8706	False	NA	-6	True	ATTAAA	-18	NA	80413155	80402957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80405057_80412580
transcript_116702.known	chr7	-	2171	3	FSM	ENSMUSG00000049600.9	ENSMUST00000051390.9	2171	3	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	65	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGATTTTAGGATTCCAA	NA	False	NA	-45	True	NA	NA	NA	12743757	12739637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12740308_12740950_12742257_12743562
transcript_116703.known	chr7	-	3908	3	FSM	ENSMUSG00000049600.9	ENSMUST00000210282.2	3908	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	93	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCTGCTTGGGCCA	NA	False	NA	NA	False	NA	NA	NA	12743727	12737824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12740308_12740950_12742257_12743608
transcript_116706.known	chr7	-	930	6	FSM	ENSMUSG00000033916.6	ENSMUST00000210587.2	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	1091.38616447159	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGCTGTGAGCTTATGA	7091	False	NA	-7	True	AATAAA	-21	NA	12768578	12765936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768428
transcript_116707.known	chr7	-	949	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	1156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6935	False	NA	-11	True	AATAAA	-17	NA	12768734	12765940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
transcript_116711.known	chr7	-	726	6	FSM	ENSMUSG00000033916.6	ENSMUST00000211626.2	726	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	1108.87882115225	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATTTACCAAGGCTGTG	7003	False	NA	-16	True	AATAAA	-12	NA	12768666	12765945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766718_12766749_12767755_12767970_12768561
transcript_116713.known	chr7	-	606	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	1201.14705594278	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7098	False	NA	-11	True	AATAAA	-17	NA	12768571	12765940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
transcript_116714.known	chr7	-	888	5	FSM	ENSMUSG00000033916.6	ENSMUST00000209487.2	888	5	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_4	222.956273739942	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7072	False	NA	-11	True	AATAAA	-17	NA	12768597	12765940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766749_12767755_12767970_12768561
transcript_116723.known	chr7	-	1472	6	FSM	ENSMUSG00000005575.17	ENSMUST00000005714.14	1472	6	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_5	193.215320303541	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	8443	False	NA	-3	True	ATTAAA	-17	NA	12772200	12769164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547
transcript_116724.known	chr7	-	3340	6	FSM	ENSMUSG00000030380.18	ENSMUST00000182515.8	3340	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	2.63818119165458	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATCTGTGTTTTCTGGGT	NA	False	NA	NA	False	NA	NA	NA	12788592	12776287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12778628_12785417_12785539_12785659_12785731_12786109_12786294_12786669_12787109_12788407
transcript_116727.known	chr7	+	3174	28	FSM	ENSMUSG00000056394.21	ENSMUST00000177588.10	3174	28	0	0	0	0	multi-exon	TRUE	canonical	3	470	junction_1	193.081793225492	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	1107	False	NA	30	True	AATAAA	-18	NA	13011238	13045350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
transcript_116734.known	chr7	+	3091	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	2620	False	NA	30	True	AATAAA	-18	NA	13012751	13045350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
transcript_116738.known	chr7	+	3166	28	FSM	ENSMUSG00000056394.21	ENSMUST00000165964.10	3166	28	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_1	177.886980349259	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	3059	False	NA	30	True	AATAAA	-18	NA	13013190	13045350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_13013400_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
transcript_11674.known	chr10	-	1468	5	FSM	ENSMUSG00000003346.15	ENSMUST00000003436.12	1468	5	0	0	0	0	multi-exon	TRUE	canonical	3	337	junction_4	42.7631558704453	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTGCTTGGCTCCTTTGT	7798	False	NA	-5	True	ATTAAA	-15	NA	80426175	80419487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80419898_80419976_80420157_80421441_80421637_80422348_80422865_80426008
transcript_11675.nnic	chr10	-	1290	4	NIC	ENSMUSG00000003346.15	novel	1468	5	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	42	junction_2	157.557044343381	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTGCTTGGCTCCTTTGT	7781	False	NA	-5	True	ATTAAA	-15	NA	80426192	80419487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80419898_80419976_80420157_80422348_80422865_80426008
transcript_116769.known	chr7	+	944	9	FSM	ENSMUSG00000056394.21	ENSMUST00000146998.9	944	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	552.157232475497	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGACCAAGGGGTGAGT	2629	False	NA	NA	False	NA	NA	NA	13012760	13025443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023313_13023422_13025112_13025239_13025381
transcript_116774.nic	chr7	+	959	6	ISM	ENSMUSG00000056394.21	ENSMUST00000146998.9	944	9	-326	2773	-317	-2773	5prime_fragment	FALSE	canonical	0	0	junction_1	535.999104476864	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAAGAAGAAGGTGAG	2303	False	NA	NA	False	AAGAAA	-2	NA	13012434	13022670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589
transcript_116782.known	chr7	-	3110	4	FSM	ENSMUSG00000070814.18	ENSMUST00000119558.9	3110	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.17856276425687	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCAGGCTGAGTTCGTGG	1682	False	NA	-5	True	AATAAA	-15	NA	13012609	12992893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12995567_13003459_13003574_13011071_13011355_13012569
transcript_116784.known	chr7	-	3346	4	FSM	ENSMUSG00000070814.18	ENSMUST00000108532.11	3346	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	5.18544972870135	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCAGGCTGAGTTCGTG	1644	False	NA	-6	True	AATAAA	-14	NA	13012647	12992894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_12995567_13003260_13003574_13011071_13011355_13012569
transcript_116788.known	chr7	-	4151	2	FSM	ENSMUSG00000070814.18	ENSMUST00000137574.2	4151	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTCAGTATAGATGGCTT	1943	False	NA	NA	False	NA	NA	NA	13012348	13007282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_13011355_13012269
transcript_11679.nnic	chr10	+	2024	8	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	-25	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	288.559830035651	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438680	80451618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80449716_80449903_80450437
transcript_116797.nnic	chr7	+	2069	4	NNC	ENSMUSG00000095922.2	novel	1140	3	NA	NA	-2424	837	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAAAACTGACATAGTTC	NA	False	NA	NA	False	NA	NA	NA	14972772	14977750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_14972820_14975151_14975414_14975539_14975740_14976190
transcript_116800.known	chr7	-	1344	3	FSM	ENSMUSG00000041583.9	ENSMUST00000108513.5	1344	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	9.5	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCCAGTTTTTACCCCC	NA	False	NA	20	True	AATAAA	-36	NA	15573603	15567165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_15567876_15568304_15568891_15573555
transcript_116802.known	chr7	+	934	5	FSM	ENSMUSG00000074365.14	ENSMUST00000098801.9	934	5	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	373.339992500134	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15630048	15637945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_15630183_15631328_15631478_15632369_15632542_15636774_15636933_15637624
transcript_116806.known	chr7	+	2090	3	FSM	ENSMUSG00000074365.14	ENSMUST00000150050.3	2090	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	3	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATCTGTGCCTGCTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	15630095	15634223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_15630183_15631328_15631478_15632369
transcript_116808.known	chr7	+	571	3	FSM	ENSMUSG00000074365.14	ENSMUST00000171280.3	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_1	106.5	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15635570	15637945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_15635663_15636774_15636933_15637624
transcript_116809.nnic	chr7	+	673	3	NNC	ENSMUSG00000074365.14	novel	571	3	NA	NA	-70	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	538.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15635500	15637945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_15635695_15636774_15636933_15637624
transcript_116813.known	chr7	-	736	6	FSM	ENSMUSG00000041571.11	ENSMUST00000044355.11	736	6	0	0	0	0	multi-exon	FALSE	canonical	3	1985	junction_1	35.4028247460566	613	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGATGTTTATTTTGGCT	NA	False	NA	-11	True	AATAAA	-21	NA	15656327	15651132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15654373_15654399_15656176
transcript_116816.known	chr7	-	3176	13	FSM	ENSMUSG00000041560.13	ENSMUST00000044158.13	3176	13	0	0	0	0	multi-exon	FALSE	canonical	3	1334	junction_1	195.89089579548	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAAAAATTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	15679999	15670107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
transcript_116818.nic	chr7	-	1846	12	NIC	ENSMUSG00000041560.13	novel	1793	12	NA	NA	-41	0	intron_retention	FALSE	canonical	3	1683	junction_10	114.507858187885	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTGGGGTCTTGTTAT	NA	False	NA	-9	True	AATAAA	-12	NA	15680040	15671762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
transcript_116823.nic	chr7	-	350	2	ISM	ENSMUSG00000041560.13	ENSMUST00000200455.2	444	4	-60	2443	-41	-2443	5prime_fragment	FALSE	canonical	3	1867	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGAGTGCTCTTATGA	NA	False	NA	0	True	NA	NA	NA	15680040	15679215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_15679280_15679754
transcript_116824.known	chr7	-	5119	6	FSM	ENSMUSG00000074364.7	ENSMUST00000098799.5	5119	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTGGACTCCGTCCCT	NA	False	NA	NA	False	AATAAA	-16	NA	15701492	15680882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_15684718_15685990_15686156_15691415_15691829_15697304_15697403_15697831_15698292_15701344
transcript_116830.known	chr7	+	2517	11	FSM	ENSMUSG00000006024.14	ENSMUST00000006181.7	2517	11	0	0	0	0	multi-exon	TRUE	canonical	3	1130	junction_8	65.9754499795189	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGCACATCTCATTCAT	NA	False	NA	2	True	AATAAA	-17	NA	15832382	15851900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
transcript_116831.known	chr7	+	1630	12	FSM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_5	5.62609034427847	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTTGTCTGGCAAGCA	NA	False	NA	32	True	NA	NA	NA	15853819	15861441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794_15854850_15856959_15857036_15857124_15857199_15857696_15857807_15857879_15857958_15858641_15858718_15859637_15859774_15859861_15860033_15861042
transcript_116837.known	chr7	+	5261	10	FSM	ENSMUSG00000030376.9	ENSMUST00000211649.2	5261	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.314269680527354	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGCATGGAACAGGAGGT	NA	False	NA	NA	False	AATAAA	-20	NA	15863750	15894988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_15864347_15867753_15868445_15874428_15875094_15878855_15879279_15884265_15884370_15884498_15884517_15886743_15886869_15887119_15887220_15891071_15891351_15892728
transcript_116841.known	chr7	+	1731	13	FSM	ENSMUSG00000041420.19	ENSMUST00000002495.18	1731	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	4.17997873466148	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCATTTGTCTT	7694	False	NA	NA	False	AATAAA	-17	NA	15909354	15920429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912875_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
transcript_116842.known	chr7	+	1839	13	FSM	ENSMUSG00000041420.19	ENSMUST00000176506.8	1839	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	5.65439848456246	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCATTTGTCTT	7539	False	NA	NA	False	AATAAA	-17	NA	15909199	15920429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912926_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919447_15919981
transcript_116843.known	chr7	+	1925	12	FSM	ENSMUSG00000041420.19	ENSMUST00000175946.8	1925	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.73723723474445	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAAAATTCTCATTTGT	7652	False	NA	NA	False	AATAAA	-14	NA	15909312	15920426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
transcript_116846.known	chr7	-	3801	17	FSM	ENSMUSG00000006019.16	ENSMUST00000163968.8	3801	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_16	13.8562655051785	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGCCTCCCTCACCCT	8442	False	NA	-1	True	AATAAA	-19	NA	15955957	15931145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_15931356_15932490_15932627_15932769_15932947_15933599_15933885_15935854_15935962_15937096_15937215_15937498_15937673_15937791_15938029_15939321_15939424_15939912_15940107_15944438_15944614_15946733_15946952_15948266_15948370_15949148_15949404_15950143_15950456_15951912_15952876_15955922
transcript_116852.known	chr7	-	1605	1	FSM	ENSMUSG00000091811.3	ENSMUST00000169612.3	1605	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGCGTTGGTTTCTGCT	NA	False	NA	-7	True	ATTAAA	-19	NA	16007542	16005937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16005900_16007500
transcript_116853.nic	chr7	-	2158	14	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	66.5924636352925	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAACTGTGCTGCTAG	NA	False	NA	-5	True	ATTAAA	-17	NA	16020719	16007966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_16008342_16009204_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_116854.nic	chr7	-	2161	14	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	69.1555146542963	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAACTGTGCTGCTAG	NA	False	NA	-5	True	ATTAAA	-17	NA	16020719	16007966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_16008342_16009204_16009301_16009662_16010036_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_116855.known	chr7	-	2175	14	FSM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	66.2157134678708	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTTTGAACTGTGCTGC	NA	False	NA	-8	True	ATTAAA	-14	NA	16020715	16007969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16008342_16009180_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_116858.nic	chr7	-	2171	14	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	68.79796336603	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTTTGAACTGTGCTGC	NA	False	NA	-8	True	ATTAAA	-14	NA	16020708	16007969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_16008342_16009180_16009301_16009662_16010036_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_116864.nic	chr7	-	1966	12	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	-10	4	combination_of_known_junctions	FALSE	canonical	3	100	junction_1	37.3980155923805	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACACCCACCCCACTGTGT	NA	False	NA	-10	True	AATAAA	-18	NA	16020730	16009397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_16010036_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_116867.nic	chr7	-	2032	12	ISM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	-88	1432	-83	0	5prime_fragment	FALSE	canonical	3	130	junction_1	29.1238449918179	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGACACCCACCCCACT	NA	False	NA	-14	True	AATAAA	-14	NA	16020803	16009401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_116878.nnic	chr7	+	1762	4	NNC	ENSMUSG00000002083.14	novel	1814	4	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	95.7160151466595	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTTTTTGTTAGCTTTA	NA	False	NA	26	True	AATAAA	-19	NA	16043495	16052130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_16043690_16046050_16046340_16047551_16047743_16051042
transcript_116881.nic	chr7	+	1884	4	NIC	ENSMUSG00000002083.14	novel	485	3	NA	NA	-232	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	92.4589999224882	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTTTTTGTTAGCTTTA	NA	False	NA	26	True	AATAAA	-19	NA	16044147	16052130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_16044464_16046050_16046340_16047551_16047743_16051042
transcript_116883.nnic	chr7	+	1728	4	NNC	ENSMUSG00000002083.14	novel	485	3	NA	NA	-156	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	100.839806954727	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTTTTTGTTAGCTTTA	NA	False	NA	26	True	AATAAA	-19	NA	16044223	16052130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_16044384_16046050_16046340_16047551_16047743_16051042
transcript_116884.known	chr7	+	1814	4	FSM	ENSMUSG00000002083.14	ENSMUST00000002152.13	1814	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	49.2769948578667	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTTTTTGTTAGCTTTA	NA	False	NA	26	True	AATAAA	-19	NA	16043540	16052130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16043787_16046050_16046340_16047551_16047743_16051042
transcript_116888.known	chr7	-	1875	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	1849	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
transcript_116892.known	chr7	+	6039	14	FSM	ENSMUSG00000059273.10	ENSMUST00000098789.5	6039	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	35.8403758961691	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGAGTCTAGTCTCAT	4778	False	NA	17	True	ATTAAA	-21	NA	16135131	16171620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16135232_16150697_16150918_16151215_16151327_16154082_16154306_16155280_16155433_16156113_16156211_16156302_16156443_16157772_16157884_16159179_16159292_16159635_16159746_16162915_16163275_16163455_16163836_16166698_16166948_16167945
transcript_116895.known	chr7	+	815	3	FSM	ENSMUSG00000019158.10	ENSMUST00000019302.10	815	3	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_1	16.5	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAGACTCTGAGTGATA	NA	False	NA	16	True	ATTAAA	-17	NA	16186703	16189415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16187096_16188045_16188139_16189085
transcript_116896.known	chr7	+	699	3	FSM	ENSMUSG00000019158.10	ENSMUST00000209536.2	699	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	359.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTCTGAGTGATAGCTC	NA	False	NA	20	True	ATTAAA	-21	NA	16186887	16189419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16187096_16187981_16188139_16189085
transcript_116898.known	chr7	-	9147	7	FSM	ENSMUSG00000058230.13	ENSMUST00000075845.11	9147	7	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_6	12.7366487830285	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCTCTCAATCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	16348918	16227643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16231936_16232508_16232615_16245117_16245250_16246332_16246411_16282987_16283133_16295382_16299255_16348396
transcript_1169.known	chr1	-	3472	4	FSM	ENSMUSG00000058407.13	ENSMUST00000193832.6	3472	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_3	348.930747665875	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACATGTCTGTTTTTAA	NA	False	NA	-3	True	NA	NA	NA	38036324	38026474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_38029539_38033072_38033192_38034713_38034923_38036244
transcript_11690.nic	chr10	+	1804	7	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	-25	1	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	238.087285581477	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438680	80451618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_80438784_80444636_80444685_80445163_80445259_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_116900.known	chr7	-	795	1	FSM	ENSMUSG00000108366.2	ENSMUST00000206264.2	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	16453835	16453040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16453000_16453800
transcript_116901.known	chr7	+	836	5	FSM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_2	14.0423466699836	369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGTCTGAGCCCTCAT	NA	False	NA	19	True	AATAAA	-19	NA	16472334	16483219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16472464_16477143_16477294_16481185_16481300_16482613_16482674_16482836
transcript_116918.known	chr7	+	2764	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	9808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16515264	16532199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
transcript_11692.known	chr10	+	1804	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	0	0	0	0	multi-exon	FALSE	canonical	3	584	junction_5	41.6239781322684	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80438713	80451617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_116935.known	chr7	+	2807	8	FSM	ENSMUSG00000001918.18	ENSMUST00000127401.8	2807	8	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_5	120.463052172753	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16515292	16532199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16530084_16531426
transcript_116966.known	chr7	+	475	4	FSM	ENSMUSG00000001918.18	ENSMUST00000206444.2	475	4	0	0	0	0	multi-exon	FALSE	canonical	3	1525	junction_3	60.7124369466422	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16516322	16521104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795
transcript_11697.nic	chr10	+	4310	7	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	-8	1	intron_retention	TRUE	canonical	3	56	junction_1	229.039601136766	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438697	80451618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_80438784_80442147_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_11698.known	chr10	+	1271	7	FSM	ENSMUSG00000113949.2	ENSMUST00000180350.3	1271	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	236.742945453972	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCCTGCTCCCACCTGTT	NA	False	NA	NA	False	NA	NA	NA	80438790	80450797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80439148_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_116994.known	chr7	+	3535	18	FSM	ENSMUSG00000030374.16	ENSMUST00000019220.16	3535	18	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_8	104.795467294144	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTTTCCAGGCCATCTG	NA	False	NA	16	True	AATAAA	-16	NA	16549813	16574856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565389_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
transcript_116998.known	chr7	+	3082	18	FSM	ENSMUSG00000030374.16	ENSMUST00000108495.9	3082	18	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_8	55.9168933502007	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAGGTTTTCCAGGCCA	NA	False	NA	12	True	AATAAA	-12	NA	16550241	16574852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565410_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
transcript_117.known	SIRV4	+	950	2	FSM	SIRV4C	SIRV410	950	2	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_1	0	1452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTATATGTTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	1455	2771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4_+_1886_2251
transcript_11700.known	chr10	+	639	6	FSM	ENSMUSG00000113949.2	ENSMUST00000220669.2	639	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	267.140113049314	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCACTGGCCTTAGGCGG	NA	False	NA	NA	False	NA	NA	NA	80438705	80450601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80446861_80446964_80448175_80448294_80450437
transcript_117020.known	chr7	-	2827	3	FSM	ENSMUSG00000048920.9	ENSMUST00000061390.9	2827	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	10.5	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACAGCTTGTTCCACAC	NA	False	NA	NA	False	AATAGA	-22	NA	16550657	16543170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16545902_16548988_16549052_16550624
transcript_117028.known	chr7	-	2290	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	0	0	0	0	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	3140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGACTCTTCCGTCTG	NA	False	NA	-14	True	AATAAA	-15	NA	16658039	16649303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
transcript_117041.known	chr7	+	4809	1	FSM	ENSMUSG00000041117.9	ENSMUST00000094805.5	4809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTTTCCGAGGTGGC	4676	False	NA	20	True	AATAAA	-17	NA	16726632	16731441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_16726600_16731400
transcript_117051.known	chr7	-	2072	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	0	0	0	0	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	4180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761841	16738564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
transcript_117053.nnic	chr7	-	1978	13	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	317.791718565618	136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761782	16738564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756374_16756582_16761617
transcript_117060.known	chr7	-	1786	12	FSM	ENSMUSG00000003099.12	ENSMUST00000142597.2	1786	12	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_8	327.971022707094	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCCTCAGGGTGGGGCAA	NA	False	NA	-116	True	NA	NA	NA	16761734	16738677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16743799_16743922_16749322_16749471_16756339_16756582_16761617
transcript_117063.nic	chr7	-	2355	12	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-3	0	intron_retention	FALSE	canonical	3	1050	junction_5	58.5383959607102	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761844	16738564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
transcript_11707.nnic	chr10	+	1361	3	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	-4	1	combination_of_known_splicesites	TRUE	canonical	2	9	junction_1	345	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438721	80451618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_80438784_80448175_80448294_80450437
transcript_11708.known	chr10	+	795	2	FSM	ENSMUSG00000113640.2	ENSMUST00000221960.2	795	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAGGGCAGCGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	80438729	80442713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80438784_80441972
transcript_117088.known	chr7	-	6402	15	FSM	ENSMUSG00000004328.16	ENSMUST00000108492.9	6402	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	3.50218590632322	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCGGTGTTGACTCATC	NA	False	NA	-1	True	CATAAA	-25	NA	16796352	16765431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_16769891_16771058_16771141_16773482_16773595_16774893_16775166_16776513_16776616_16778301_16778493_16778779_16778893_16782538_16782687_16782924_16783032_16784473_16784683_16785057_16785171_16785846_16785932_16788606_16788753_16790184_16790376_16796280
transcript_11709.known	chr10	+	1411	2	FSM	ENSMUSG00000113640.2	ENSMUST00000038411.5	1411	2	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCGTTTGCACTCAGGT	NA	False	NA	3	True	AATAAA	-15	NA	80438713	80443488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80438784_80442147
transcript_117090.known	chr7	+	694	3	FSM	ENSMUSG00000030413.8	ENSMUST00000032573.8	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	21	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCCCTCCGGTGAATC	NA	False	NA	6	True	AATAAA	-15	NA	18618604	18624366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18618899_18623202_18623325_18624088
transcript_117103.known	chr7	-	2022	14	FSM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_7	27.4902887640592	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2760	False	NA	-1	True	AATAAA	-18	NA	18644340	18624807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
transcript_117109.nic	chr7	-	2008	14	NIC	ENSMUSG00000074358.10	novel	1961	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_7	38.5657050949086	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTAGTGTGTGATTCA	2761	False	NA	-2	True	AATAAA	-17	NA	18644339	18624808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
transcript_117127.known	chr7	-	1961	14	FSM	ENSMUSG00000074358.10	ENSMUST00000135467.8	1961	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_10	61.8715026505473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTAGTGTGTGATTCA	2777	False	NA	-2	True	AATAAA	-17	NA	18644323	18624808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633608_18634843_18635002_18637394_18637478_18637706_18637865_18644057
transcript_117128.known	chr7	+	2173	3	FSM	ENSMUSG00000048481.16	ENSMUST00000059331.9	2173	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGAGGCTCTGAGACAG	6964	False	NA	NA	False	AATAAA	-18	NA	18725169	18735689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18725280_18725756_18726546_18734415
transcript_117129.known	chr7	+	1951	3	FSM	ENSMUSG00000048481.16	ENSMUST00000131087.2	1951	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGGCTCTGAGACAGGC	7038	False	NA	NA	False	AATAAA	-20	NA	18725243	18735691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18725280_18725906_18726546_18734415
transcript_11713.nic	chr10	+	2447	12	NIC	ENSMUSG00000003345.17	novel	2348	11	NA	NA	-180	0	combination_of_known_junctions	FALSE	canonical	3	537	junction_4	57.9097331204578	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAATGTTGGCCTGGG	NA	False	NA	9	True	GGGGCT	-36	NA	80458491	80476575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843_80473914_80473994_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
transcript_117130.known	chr7	+	2734	1	FSM	ENSMUSG00000044030.5	ENSMUST00000053713.5	2734	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATGGTACTGAGATTCTGA	NA	False	NA	21	True	ATTAAA	-27	NA	18737968	18740702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18738000_18740700
transcript_117131.known	chr7	-	2037	2	FSM	ENSMUSG00000040891.7	ENSMUST00000036018.6	2037	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTAGTGTCTTTTTCTT	NA	False	NA	-3	True	ATTAAA	-16	NA	18757463	18747208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_18749056_18757273
transcript_117142.known	chr7	+	4116	27	FSM	ENSMUSG00000023118.16	ENSMUST00000023882.14	4116	27	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_24	19.2187654844311	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGGATGTGCCTGTGT	NA	False	NA	15	True	AATAAA	-29	NA	18758301	18788542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779096_18779556_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862_18783965_18786291_18786480_18787194_18787372_18787471_18787568_18787839_18788224_18788313
transcript_117162.known	chr7	+	4781	23	FSM	ENSMUSG00000023118.16	ENSMUST00000146903.8	4781	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	46.7173892978826	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATGGCCAGTGGTGTTT	NA	False	NA	7	True	AATAAA	-20	NA	18758350	18785678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770088_18770163_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779096_18779556_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862
transcript_117190.nnic	chr7	+	2447	6	NNC	ENSMUSG00000030410.17	novel	2494	5	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	3	junction_1	119.313704158408	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	NA	False	NA	13	True	ACTAAA	-13	NA	18810125	18816700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_18810377_18810448_18810627_18811979_18812163_18813966_18815227_18815843_18815919_18816200
transcript_117192.nnic	chr7	+	2442	6	NNC	ENSMUSG00000030410.17	novel	2494	5	NA	NA	-22	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	120.436871430638	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	NA	False	NA	13	True	ACTAAA	-13	NA	18810129	18816700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_18810384_18810456_18810627_18811979_18812163_18813966_18815227_18815843_18815919_18816200
transcript_117193.nnic	chr7	+	2373	5	NNC	ENSMUSG00000030410.17	novel	2494	5	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	3	junction_1	133.874941643311	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTTTCTGTTCCCTGGG	NA	False	NA	14	True	ACTAAA	-14	NA	18810125	18816701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_18810377_18810448_18810627_18811979_18812163_18813966_18815227_18816200
transcript_117197.known	chr7	+	2494	5	FSM	ENSMUSG00000030410.17	ENSMUST00000032570.14	2494	5	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_3	47.1858029496161	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTTTCTGTTCCCTGGG	NA	False	NA	14	True	ACTAAA	-14	NA	18810151	18816701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18810627_18811979_18812163_18813966_18815227_18815843_18815919_18816200
transcript_117198.known	chr7	+	3007	3	FSM	ENSMUSG00000040841.6	ENSMUST00000049454.6	3007	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAAGACTGGATTTCTGA	NA	False	NA	NA	False	NA	NA	NA	18828518	18832474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18829344_18830156_18830945_18831080
transcript_117199.nnic	chr7	-	2672	8	NNC	ENSMUSG00000030407.3	novel	2710	7	NA	NA	-23	67	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	17.4741792017683	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCTTCCAAGATTCACCC	7181	False	NA	NA	False	NA	NA	NA	18883239	18873559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_18873739_18873866_18875225_18877110_18877228_18878584_18878685_18878808_18878962_18880794_18881077_18882300_18882445_18882900
transcript_117203.known	chr7	-	2710	7	FSM	ENSMUSG00000030407.3	ENSMUST00000032566.3	2710	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	5.82380173655205	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATTAAAAACCAAAAA	7204	False	NA	NA	False	NA	NA	NA	18883216	18873626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_18875225_18877110_18877228_18878584_18878685_18878808_18878962_18880794_18881077_18882300_18882445_18882900
transcript_117212.known	chr7	+	4873	2	FSM	ENSMUSG00000050428.8	ENSMUST00000053109.5	4873	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAATTATAAAAAAAA	9337	False	NA	NA	False	NA	NA	NA	18853783	18874097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18853862_18869302
transcript_117214.known	chr7	+	1420	3	FSM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	0	0	0	0	multi-exon	FALSE	canonical	3	3249	junction_1	86	1824	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTCTCTCTTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	18883646	18887467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18883820_18885142_18885323_18886400
transcript_117221.known	chr7	+	2765	22	FSM	ENSMUSG00000040811.16	ENSMUST00000117338.8	2765	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	53.2636023741211	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTTTGGGAGATGTCTA	NA	False	NA	NA	False	NA	NA	NA	18910345	18940182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18910687_18913151_18913371_18913450_18913575_18913675_18913781_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_117223.known	chr7	+	2255	19	FSM	ENSMUSG00000040811.16	ENSMUST00000120595.8	2255	19	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	24.7224719088515	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18915094	18940407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18915149_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_117224.nic	chr7	+	2311	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	33.4490583749803	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCTGGAGTCTGGTC	NA	False	NA	21	True	AATACA	-13	NA	18915096	18940403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_18915211_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_117227.nic	chr7	+	2376	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	28.4707452191426	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCTGGAGTCTGGTC	NA	False	NA	21	True	AATACA	-13	NA	18915101	18940403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_18915281_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_117228.nic	chr7	+	2429	19	NIC	ENSMUSG00000040811.16	novel	596	6	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	34.4726139291918	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCTGGAGTCTGGTC	NA	False	NA	21	True	AATACA	-13	NA	18915241	18940403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_18915474_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_117234.known	chr7	+	2074	17	FSM	ENSMUSG00000040811.16	ENSMUST00000148246.8	2074	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	52.7836089614949	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCTGGAGTCTGGTC	NA	False	NA	21	True	AATACA	-13	NA	18915105	18940403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18915149_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935489_18935579_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_117236.known	chr7	+	2882	2	FSM	ENSMUSG00000044317.8	ENSMUST00000060225.6	2882	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCCCTTTTAAATTTAGT	NA	False	NA	NA	False	AATAAA	-26	NA	18946462	18958099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18946560_18955314
transcript_117237.known	chr7	+	3366	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	0	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCTTCAATTTTAT	3233	False	NA	9	True	AATAAA	-14	NA	18962258	18981793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18962510_18978678
transcript_117239.known	chr7	+	1390	2	FSM	ENSMUSG00000052214.10	ENSMUST00000161711.2	1390	2	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGTGTCTCAAACCATT	3282	False	NA	NA	False	ATTAAA	-14	NA	18962307	18990468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_18962510_18989280
transcript_11724.known	chr10	+	2348	11	FSM	ENSMUSG00000003345.17	ENSMUST00000079773.14	2348	11	0	0	0	0	multi-exon	FALSE	canonical	3	651	junction_8	40.2685981876698	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAATGTTGGCCTGGG	NA	False	NA	9	True	GGGGCT	-36	NA	80458671	80476575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80458785_80470047_80470476_80473721_80473763_80473843_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
transcript_117262.known	chr7	-	2215	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	0	0	0	0	multi-exon	TRUE	canonical	3	1236	junction_9	117.461666323765	4347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
transcript_117284.nnic	chr7	-	2556	11	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	-780	0	at_least_one_novel_splicesite	FALSE	canonical	3	142	junction_8	402.203443545676	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19006522	18990853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994796_18998450_18998496_18998578_18998751_19005438
transcript_117322.known	chr7	-	1648	5	FSM	ENSMUSG00000030402.6	ENSMUST00000032560.6	1648	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	5.35607132140714	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTTCTTCGTTGTTGT	9555	False	NA	1	True	AATAAA	-17	NA	19013989	19010729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194_19012313_19013031
transcript_117323.known	chr7	+	1990	10	FSM	ENSMUSG00000030401.17	ENSMUST00000032559.17	1990	10	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	11.5662343819316	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCTGTGTTTTAAAG	NA	False	NA	12	True	AATAAA	-20	NA	19016548	19030085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19016791_19020459_19020505_19020607_19021079_19021171_19021436_19027000_19027209_19027527_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
transcript_117324.nic	chr7	+	2355	9	NIC	ENSMUSG00000030401.17	novel	1990	10	NA	NA	-46	0	intron_retention	FALSE	canonical	3	51	junction_4	11.6397755562554	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCTGTGTTTTAAAG	NA	False	NA	12	True	AATAAA	-20	NA	19016502	19030085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_19016791_19020459_19020505_19020607_19021079_19021171_19021436_19027000_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
transcript_117326.known	chr7	+	1076	7	FSM	ENSMUSG00000030401.17	ENSMUST00000108468.5	1076	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	28.3279406632784	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCTGTGTTTTAAAG	580	False	NA	12	True	AATAAA	-20	NA	19024993	19030085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19025102_19027000_19027209_19027527_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
transcript_117327.known	chr7	-	1548	1	FSM	ENSMUSG00000108854.2	ENSMUST00000208263.2	1548	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	19076440	19074892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19074900_19076400
transcript_117328.known	chr7	+	1375	10	FSM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	0	0	0	0	multi-exon	TRUE	canonical	3	315	junction_9	39.5851948880006	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	711	False	NA	15	True	AATAAA	-20	NA	19078702	19090449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
transcript_117339.known	chr7	-	2239	3	FSM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	10	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAATGTCTTACTTTTG	2158	False	NA	-19	True	NA	NA	NA	19093406	19089938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19091942_19093014_19093157_19093312
transcript_11734.known	chr10	-	3026	9	FSM	ENSMUSG00000003344.15	ENSMUST00000003434.14	3026	9	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_4	58.371118714652	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTATGTTGTCTGAGTG	NA	False	NA	1	True	AATAAA	-26	NA	80492905	80478450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
transcript_117342.known	chr7	-	489	2	FSM	ENSMUSG00000047649.10	ENSMUST00000176333.2	489	2	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTCTGAGCAACCCGGAA	2156	False	NA	NA	False	NA	NA	NA	19093408	19092763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19093157_19093312
transcript_117345.nnic	chr7	+	3470	15	NNC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	20.5172898715564	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	662	False	NA	NA	False	AATAAA	-15	NA	19093638	19112458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_19093724_19094589_19094660_19094951_19095242_19102470_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
transcript_117349.nic	chr7	+	3617	14	NIC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	-252	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	16.4298760921185	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	445	False	NA	NA	False	AATAAA	-15	NA	19093421	19112458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_19093724_19094951_19095242_19102470_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
transcript_117352.nnic	chr7	+	3385	14	NNC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	219	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	19.6718643885299	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	937	False	NA	NA	False	AATAAA	-15	NA	19093913	19112458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_19093984_19094951_19095242_19102470_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
transcript_117353.nic	chr7	+	4156	14	NIC	ENSMUSG00000040734.15	novel	3130	13	NA	NA	226	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	18.0793779020586	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	944	False	NA	NA	False	AATAAA	-15	NA	19093920	19112458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_19094762_19094951_19095242_19102470_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
transcript_117357.known	chr7	+	3130	13	FSM	ENSMUSG00000040734.15	ENSMUST00000047621.14	3130	13	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	11.000946928939	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAACATCATTTTGATT	414	False	NA	NA	False	AATAAA	-15	NA	19095140	19112458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19095242_19102466_19102548_19102641_19102785_19103718_19104230_19104313_19104413_19104490_19104583_19105129_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
transcript_11736.known	chr10	-	2449	9	FSM	ENSMUSG00000003344.15	ENSMUST00000126980.8	2449	9	0	0	0	0	multi-exon	TRUE	canonical	3	325	junction_4	58.371118714652	1543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTATGTTGTCTGAGTG	NA	False	NA	1	True	AATAAA	-26	NA	80492328	80478450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
transcript_117360.known	chr7	+	3578	23	FSM	ENSMUSG00000030400.18	ENSMUST00000062831.16	3578	23	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_1	20.1272809394744	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTTGCTTCTGATAT	NA	False	NA	13	True	AATAAA	-21	NA	19115934	19129619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19115985_19116203_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
transcript_117362.nic	chr7	+	3481	22	NIC	ENSMUSG00000030400.18	novel	3578	23	NA	NA	-3	0	intron_retention	TRUE	canonical	2	2	junction_1	34.8788639062727	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTTGCTTCTGATAT	NA	False	NA	13	True	AATAAA	-21	NA	19115931	19129619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_19115985_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
transcript_11737.nnic	chr10	-	2399	9	NNC	ENSMUSG00000003344.15	novel	3026	9	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_8	145.445812504176	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGAGTGCTATGTTGTC	NA	False	NA	-5	True	AATAAA	-20	NA	80492349	80478456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80492028
transcript_117371.known	chr7	-	1849	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108459.9	1849	13	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_12	5.52959210872636	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTGCGATCTGCTCA	6332	False	NA	NA	False	NA	NA	NA	19133846	19128364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19133733
transcript_117372.known	chr7	-	1823	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108458.10	1823	13	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_12	5.99247212944893	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCGATCTGCTCAATT	2149	False	NA	NA	False	NA	NA	NA	19138029	19128361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19137945
transcript_117383.nnic	chr7	+	2020	2	NNC	ENSMUSG00000002043.18	novel	955	4	NA	NA	-1084	545	intron_retention	FALSE	canonical	0	0	junction_1	0	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGTGAGCCTGCACAG	NA	False	NA	NA	False	AATAAA	-14	NA	19241235	19243386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_19242310_19242440
transcript_117385.known	chr7	-	3188	2	FSM	ENSMUSG00000057667.8	ENSMUST00000077408.8	3188	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGCATTCCTAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	19242292	19238410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19241536_19242229
transcript_117388.known	chr7	+	719	5	FSM	ENSMUSG00000002043.18	ENSMUST00000147114.2	719	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	197.958802532244	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	505	False	NA	21	True	AGTAAA	-22	NA	19242634	19250070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19242758_19248346_19248465_19248931_19249016_19249128_19249223_19249770
transcript_117393.known	chr7	+	785	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_1	62.2009646227452	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	507	False	NA	21	True	AGTAAA	-22	NA	19242636	19250070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
transcript_117394.known	chr7	+	651	6	FSM	ENSMUSG00000002043.18	ENSMUST00000108455.8	651	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	201.035917188944	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCTGTGCAGTGCTTAT	521	False	NA	17	True	AGTAAA	-18	NA	19242650	19250066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249886
transcript_117398.known	chr7	-	3816	13	FSM	ENSMUSG00000051403.10	ENSMUST00000058444.10	3816	13	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	17.5752351019521	523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCCTCTGTTTCCTGC	7514	False	NA	-6	True	AATAAA	-15	NA	19297001	19264724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19265352_19265431_19265519_19265708_19266451_19266571_19266739_19266842_19266985_19267888_19268002_19268295_19268452_19268531_19268683_19268913_19269034_19269415_19269517_19269633_19269680_19271294_19271393_19295735
transcript_1174.nic	chr1	-	1813	4	ISM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	51	3940	-2	1129	5prime_fragment	FALSE	canonical	3	765	junction_3	81.3183046224321	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGGGTGGCACCATAG	NA	False	NA	NA	False	ATTAAA	-10	NA	38036345	38028209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_38029539_38033072_38033192_38034713_38034923_38036189
transcript_117412.nnic	chr7	+	1497	4	NNC	ENSMUSG00000011267.9	novel	1530	3	NA	NA	-13	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	113.461692017859	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGCCTGGACTTTCT	714	False	NA	20	True	AATAAA	-15	NA	19311198	19314575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_19311554_19311741_19311886_19313537_19314092_19314131
transcript_117413.known	chr7	+	1530	3	FSM	ENSMUSG00000011267.9	ENSMUST00000108453.2	1530	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_1	5.5	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGACTTTCTTGGGGT	727	False	NA	26	True	AATAAA	-21	NA	19311211	19314581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19311554_19311741_19311886_19313537
transcript_117416.nnic	chr7	-	1537	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-157	182	intron_retention	FALSE	non_canonical	0	0	junction_1	112.5	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2307	False	NA	NA	False	AAGAAA	-17	NA	19307905	19298688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_19298802_19298849_19299602_19307233
transcript_117417.nnic	chr7	-	973	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-52	182	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	27	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2412	False	NA	NA	False	AAGAAA	-17	NA	19307800	19298688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_19298802_19298849_19299602_19307692
transcript_117420.known	chr7	-	763	2	FSM	ENSMUSG00000044709.7	ENSMUST00000051364.4	763	2	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGCTGCTGTGTGTGTGT	2944	False	NA	-9	True	AATAAA	-19	NA	19307268	19298873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19299602_19307233
transcript_117421.known	chr7	-	652	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122127.2	652	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGATCATAAACTCAAGG	3319	False	NA	NA	False	NA	NA	NA	19306893	19299011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19299602_19306831
transcript_117426.known	chr7	-	2151	21	FSM	ENSMUSG00000061028.8	ENSMUST00000208068.2	2151	21	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	53.6276747584678	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338386	19314967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318704_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
transcript_117428.nnic	chr7	-	2198	21	NNC	ENSMUSG00000061028.8	novel	2180	21	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_8	59.9460382343988	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338461	19314967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014_19319273_19320289_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
transcript_117433.nnic	chr7	-	2246	21	NNC	ENSMUSG00000061028.8	novel	2180	21	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	62.3441256254348	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338461	19314967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_19315084_19315305_19315331_19316156_19316264_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
transcript_117439.known	chr7	-	4545	20	FSM	ENSMUSG00000061028.8	ENSMUST00000208464.2	4545	20	0	0	0	0	multi-exon	TRUE	canonical	3	161	junction_6	33.2616588602929	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGCTGTCCCCTTATT	NA	False	NA	-4	True	AATAAA	-26	NA	19338384	19314962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
transcript_117449.nic	chr7	-	2475	20	NIC	ENSMUSG00000061028.8	novel	2151	21	NA	NA	-50	0	intron_retention	FALSE	canonical	3	190	junction_19	27.1360581324836	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338461	19314967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
transcript_117458.nnic	chr7	-	2499	20	NNC	ENSMUSG00000061028.8	novel	2151	21	NA	NA	-50	0	intron_retention	FALSE	non_canonical	0	0	junction_3	61.7483948449511	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338461	19314967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_19315084_19315305_19315331_19316156_19316264_19318079_19318127_19318208_19318268_19318394_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
transcript_117481.nic	chr7	-	2452	12	NIC	ENSMUSG00000002983.18	novel	2209	12	NA	NA	-99	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	91.1853982801201	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362497	19340147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19356850_19356860_19361847_19361896_19362000
transcript_117482.nic	chr7	-	2263	12	NIC	ENSMUSG00000002983.18	novel	2209	12	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	99.9361779808568	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362409	19340147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19356850_19356860_19361847_19361896_19362101
transcript_117485.known	chr7	-	2209	12	FSM	ENSMUSG00000002983.18	ENSMUST00000094762.10	2209	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	93.6601911430821	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTCTTCTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-20	NA	19363363	19340141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19356850_19356860_19361847_19361896_19363115
transcript_117488.nic	chr7	-	2443	11	NIC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	-99	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_10	54.7927002437368	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362497	19340147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19362000
transcript_117492.known	chr7	-	2200	11	FSM	ENSMUSG00000002983.18	ENSMUST00000049912.15	2200	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_10	60.3088716525189	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGTCTTCTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-20	NA	19363363	19340141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19363115
transcript_117520.known	chr7	-	4143	14	FSM	ENSMUSG00000002981.11	ENSMUST00000055242.11	4143	14	0	0	0	0	multi-exon	FALSE	canonical	3	1363	junction_5	136.704319631521	2097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTCCCCAACTTTGAGA	5148	False	NA	NA	False	AAAACA	-17	NA	19398958	19365495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
transcript_117526.known	chr7	-	4819	13	FSM	ENSMUSG00000002981.11	ENSMUST00000208554.2	4819	13	0	0	0	0	multi-exon	FALSE	canonical	3	1363	junction_5	138.739464064443	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGATGCACCATGTACTG	5151	False	NA	NA	False	AAAACA	-2	NA	19398955	19365510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
transcript_117530.known	chr7	-	3107	13	FSM	ENSMUSG00000002981.11	ENSMUST00000208846.2	3107	13	0	0	0	0	multi-exon	FALSE	canonical	3	1363	junction_4	142.270477924582	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCAACCACCGCACCTC	5160	False	NA	-17	True	AATAAA	-21	NA	19398946	19367173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19367888_19367980_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
transcript_117541.known	chr7	-	538	3	FSM	ENSMUSG00000074336.6	ENSMUST00000003071.10	538	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGCATAGCTTCTCTTGA	5934	False	NA	3	True	AATAAA	-27	NA	19415404	19412007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19412238_19412534_19412668_19415229
transcript_117544.known	chr7	-	432	4	FSM	ENSMUSG00000040564.15	ENSMUST00000045035.12	432	4	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_3	145.90027035235	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426585	19423405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19423562_19425812_19425961_19426335_19426412_19426533
transcript_117546.known	chr7	-	532	3	FSM	ENSMUSG00000040564.15	ENSMUST00000108451.4	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	0.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426563	19423405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19423562_19425812_19425961_19426335
transcript_117547.known	chr7	-	817	5	FSM	ENSMUSG00000002985.17	ENSMUST00000172983.8	817	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	5193.26072906031	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGGCCCGTGACCGCCT	NA	False	NA	NA	False	NA	NA	NA	19432963	19430544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432328_19432399_19432935
transcript_117551.known	chr7	-	1128	4	FSM	ENSMUSG00000002985.17	ENSMUST00000003066.16	1128	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4936.24555935199	9362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432977	19430196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19431029_19431403_19431573_19432112_19432198_19432935
transcript_117554.known	chr7	-	514	3	FSM	ENSMUSG00000002985.17	ENSMUST00000174710.2	514	3	0	0	0	0	multi-exon	FALSE	canonical	3	8700	junction_2	860.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGGCTCTGCAATTCTTA	NA	False	NA	NA	False	NA	NA	NA	19432975	19431164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19431573_19432112_19432179_19432935
transcript_117559.known	chr7	-	1221	3	FSM	ENSMUSG00000002985.17	ENSMUST00000173739.8	1221	3	0	0	0	0	multi-exon	FALSE	canonical	3	10421	junction_2	50	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432332	19430196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19431029_19431403_19431573_19432112
transcript_11756.known	chr10	-	3439	14	FSM	ENSMUSG00000020190.14	ENSMUST00000200082.5	3439	14	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_13	111.384031022692	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCAGTGACAGCAG	9981	False	NA	-46	True	AATAAA	-14	NA	80512127	80501160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507850_80511657_80511775_80511914
transcript_117563.known	chr7	-	1577	10	FSM	ENSMUSG00000002984.18	ENSMUST00000093552.12	1577	10	0	0	0	0	multi-exon	TRUE	canonical	3	2342	junction_9	200.868177398407	2458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGAGGCCTCGGTTTTC	9881	False	NA	-13	True	NA	NA	NA	19449363	19435237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905_19449185_19449282
transcript_11757.nnic	chr10	-	3437	14	NNC	ENSMUSG00000020190.14	novel	3439	14	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	3	433	junction_2	28.6420471318886	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCAGTGACAGCAG	9941	False	NA	-46	True	AATAAA	-14	NA	80512167	80501160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569_80507672_80507761_80507850_80511657_80511775_80511956
transcript_117579.known	chr7	-	2735	9	FSM	ENSMUSG00000062300.15	ENSMUST00000075447.14	2735	9	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_4	306.654528745297	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGAAGTGAGTGGGGT	NA	False	NA	-2	True	GATAAA	-18	NA	19483498	19450568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19451713_19453120_19453208_19453357_19453422_19455277_19455432_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
transcript_117599.known	chr7	-	1955	6	FSM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	167.41517255016	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483458	19458085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19458795_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
transcript_117608.known	chr7	-	1646	9	FSM	ENSMUSG00000002984.18	ENSMUST00000032555.10	1646	9	0	0	0	0	multi-exon	FALSE	canonical	3	2643	junction_3	135.037899772619	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAAAAAATAGGATCTG	9894	False	NA	-29	True	NA	NA	NA	19449350	19435253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905
transcript_117609.known	chr7	-	2766	4	FSM	ENSMUSG00000002984.18	ENSMUST00000173966.2	2766	4	0	0	0	0	multi-exon	FALSE	canonical	3	2342	junction_3	263.449341535627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAAATAAAAATAA	9891	False	NA	NA	False	NA	NA	NA	19449353	19445338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19447687_19448217_19448286_19448905_19449185_19449282
transcript_117617.known	chr7	-	2429	15	FSM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	0	0	0	0	multi-exon	TRUE	canonical	3	510	junction_11	49.5145824737624	1864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCGCCAGGTTCTCTTCT	3912	False	NA	-5	True	AATAAA	-26	NA	19504472	19490055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
transcript_117647.known	chr7	-	1449	8	FSM	ENSMUSG00000002980.15	ENSMUST00000133271.2	1449	8	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_4	38.4102452319106	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCGCTAGAAAGAAAGCT	3964	False	NA	NA	False	AAAAAG	-13	NA	19504420	19497597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
transcript_117649.known	chr7	-	1662	12	FSM	ENSMUSG00000040525.14	ENSMUST00000043822.8	1662	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	3.71283233757493	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCGTGTGTGACAGAG	NA	False	NA	1	True	AATAAA	-20	NA	19530734	19513642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19513722_19514697_19514773_19514894_19515002_19518727_19518806_19519162_19519325_19520107_19520240_19522893_19522982_19524324_19524463_19526032_19526155_19526433_19526591_19526733_19526881_19530357
transcript_11765.known	chr10	-	2682	4	FSM	ENSMUSG00000003348.11	ENSMUST00000003438.11	2682	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	9.97775303139718	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCGGGCTGCTCCTTGTTG	9117	False	NA	-1	True	AATAAA	-16	NA	80537689	80521086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80523008_80525685_80525889_80526902_80527402_80537630
transcript_11766.known	chr10	-	314	2	FSM	ENSMUSG00000003348.11	ENSMUST00000218439.2	314	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTGTACATTTCATCT	9144	False	NA	NA	False	CATAAA	-17	NA	80537662	80535661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80535944_80537630
transcript_117661.known	chr7	-	1850	9	FSM	ENSMUSG00000053175.18	ENSMUST00000120537.8	1850	9	0	0	0	0	multi-exon	TRUE	canonical	3	615	junction_1	42.6314144733669	892	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGCTTTCCATCTGTT	5729	False	NA	-8	True	AATAAA	-17	NA	19556695	19542386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19542982_19543066_19543185_19543420_19543589_19544981_19545060_19545244_19545334_19545419_19545625_19546329_19546439_19553971_19554126_19556361
transcript_117662.known	chr7	+	402	2	FSM	ENSMUSG00000087593.2	ENSMUST00000137373.2	402	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAAGGAATGACGTGGAC	NA	False	NA	NA	False	AATAAA	-28	NA	19550477	19552550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_19550699_19552369
transcript_117666.known	chr7	-	2905	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTGTCCGAGCCTTTG	9931	False	NA	-1	True	NA	NA	NA	19655085	19637502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
transcript_11768.known	chr10	+	1196	10	FSM	ENSMUSG00000055862.8	ENSMUST00000218184.2	1196	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	7.62711213410245	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	False	NA	2	True	ATTAAA	-15	NA	80538259	80541207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540013_80540029_80540251_80540270_80540532_80540548_80540897
transcript_117680.known	chr7	-	645	1	FSM	ENSMUSG00000066724.4	ENSMUST00000086013.4	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAAAATAAGGCTG	NA	False	NA	NA	False	AATAAA	-13	NA	23646715	23646070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_23646100_23646700
transcript_117681.known	chr7	+	827	6	FSM	ENSMUSG00000057101.9	ENSMUST00000206184.2	827	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	37.880865882395	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAACAACCGAACAAGCAAG	NA	False	NA	NA	False	NA	NA	NA	23781371	23803983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_23781664_23784850_23784932_23785912_23786017_23797245_23797321_23800872_23800994_23803829
transcript_117684.known	chr7	+	3901	5	FSM	ENSMUSG00000057101.9	ENSMUST00000068975.6	3901	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	15.0499169432924	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCACTTGTTTGATCTT	NA	False	NA	NA	False	AATAAA	-30	NA	23781348	23807138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_23781664_23784850_23784932_23797245_23797321_23800872_23800994_23803829
transcript_117688.known	chr7	+	3044	5	FSM	ENSMUSG00000052675.12	ENSMUST00000005413.4	3044	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.58113883008419	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTGCCGGAGCGTGGCT	NA	False	NA	NA	False	NA	NA	NA	23811748	23826918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_23811862_23817759_23817809_23821658_23821786_23823343_23823440_23824259
transcript_117689.known	chr7	+	2628	4	FSM	ENSMUSG00000052675.12	ENSMUST00000215113.2	2628	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCCTTTCTGGTTTTTTT	NA	False	NA	NA	False	AATGAA	-10	NA	23817793	23826661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_23817809_23821658_23821786_23823343_23823428_23824259
transcript_117692.known	chr7	+	3373	4	FSM	ENSMUSG00000047603.10	ENSMUST00000056549.9	3373	4	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_3	6.18241233033047	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTTTCTCATCCTTT	NA	False	NA	6	True	AATAAA	-14	NA	23833666	23842666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_23833913_23834682_23834741_23836470_23836598_23839724
transcript_117694.known	chr7	+	1037	4	FSM	ENSMUSG00000068962.8	ENSMUST00000205309.2	1037	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	13.589211407093	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAAGCCCTCCCACTGC	NA	False	NA	NA	False	NA	NA	NA	23874484	23880559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_23874575_23875533_23875592_23877174_23877302_23879797
transcript_117696.known	chr7	+	3154	3	FSM	ENSMUSG00000068962.8	ENSMUST00000206547.2	3154	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	13	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAGAAAAAAGAATACAA	NA	False	NA	NA	False	NA	NA	NA	23874510	23881743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_23875592_23877174_23877302_23879797
transcript_117698.known	chr7	-	6402	4	FSM	ENSMUSG00000087598.10	ENSMUST00000086006.12	6402	4	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_1	10.4986771653491	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTTTGCTTCGGTAGCT	NA	False	NA	NA	False	NA	NA	NA	23907574	23893371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_23899468_23902794_23902922_23906482_23906541_23907453
transcript_117700.known	chr7	-	2932	4	FSM	ENSMUSG00000074283.6	ENSMUST00000206362.2	2932	4	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	7.93025150224688	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCTTACATCTTATACT	NA	False	NA	NA	False	NA	NA	NA	23936985	23926996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_23929266_23933775_23933903_23936042_23936101_23936507
transcript_117707.known	chr7	+	3508	4	FSM	ENSMUSG00000055305.16	ENSMUST00000108438.10	3508	4	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	2.44948974278318	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCGTTTTCTCATAATAAG	NA	False	NA	NA	False	NA	NA	NA	23969844	23977219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_23970107_23971037_23971096_23972672_23972800_23974158
transcript_117711.known	chr7	-	2480	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGGATTCTTTGTGTG	NA	False	NA	7	True	TATAAA	-23	NA	23999100	23990463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
transcript_117713.nnic	chr7	-	2294	6	NIC	ENSMUSG00000050605.18	novel	2480	7	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	15.3310143173894	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGGATTCTTTGTGTG	NA	False	NA	7	True	TATAAA	-23	NA	23999080	23990463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23997698_23997801_23998617
transcript_117715.known	chr7	-	1542	1	FSM	ENSMUSG00000050605.18	ENSMUST00000206535.2	1542	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAACCCACAA	NA	False	NA	NA	False	GATAAA	-2	NA	23999062	23997520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_23997500_23999100
transcript_117719.known	chr7	-	2599	6	FSM	ENSMUSG00000074282.11	ENSMUST00000108436.8	2599	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.8262252939418	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAAGACAGTCACTTGA	NA	False	NA	NA	False	AGTAAA	-16	NA	24016030	24001128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24003299_24008495_24008623_24010889_24010929_24011806_24011921_24013774_24013837_24015943
transcript_117723.known	chr7	-	2529	5	FSM	ENSMUSG00000074282.11	ENSMUST00000032673.15	2529	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0.866025403784439	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTTTGAATTGTATATC	NA	False	NA	NA	False	NA	NA	NA	24016091	24001220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24003299_24008495_24008623_24011806_24011921_24013774_24013837_24015943
transcript_117726.known	chr7	-	902	4	FSM	ENSMUSG00000074282.11	ENSMUST00000137781.8	902	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0.942809041582063	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAATCACTTTGCG	NA	False	NA	NA	False	NA	NA	NA	24016049	24008002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24008623_24011806_24011921_24013774_24013837_24015943
transcript_117728.nnic	chr7	+	2277	14	NNC	ENSMUSG00000002210.12	novel	2242	14	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	41.9832313665388	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGTTTGTTCTTTCTC	NA	False	NA	19	True	AATAAA	-19	NA	24098984	24122203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119522_24120000_24120109_24120237_24120367_24120544_24120690_24121724
transcript_117731.known	chr7	+	2242	14	FSM	ENSMUSG00000002210.12	ENSMUST00000002280.11	2242	14	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_3	14.7828462881374	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGTTTGTTCTTTCTC	NA	False	NA	19	True	AATAAA	-19	NA	24099043	24122203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
transcript_11774.known	chr10	+	1845	4	FSM	ENSMUSG00000055862.8	ENSMUST00000219986.2	1845	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	10.8730042868667	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	False	NA	2	True	ATTAAA	-15	NA	80538140	80541207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80538189_80538882_80538964_80539042_80539115_80539563
transcript_117742.known	chr7	+	1620	6	FSM	ENSMUSG00000002210.12	ENSMUST00000146381.8	1620	6	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	16.7761735804086	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	24099043	24107698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945
transcript_117747.known	chr7	+	649	3	FSM	ENSMUSG00000002210.12	ENSMUST00000139481.2	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	4.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACCACCCAAGGGAGAGA	NA	False	NA	NA	False	GGGGCT	-42	NA	24099148	24105276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24099317_24102816_24102973_24104951
transcript_117749.known	chr7	+	1506	7	FSM	ENSMUSG00000046223.11	ENSMUST00000002284.11	1506	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	5.84284938098603	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCTAGGTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	24161908	24175392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24161993_24164555_24164667_24166099_24166244_24171323_24171480_24171997_24172133_24173634_24173782_24174663
transcript_117751.known	chr7	+	2161	9	FSM	ENSMUSG00000054793.9	ENSMUST00000068023.8	2161	9	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_8	7.9912061042123	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGGTGGCTGTGTGTCT	6401	False	NA	NA	False	ATTAAA	-17	NA	24181447	24203964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24181588_24198580_24198728_24198937_24199091_24199348_24199484_24199900_24200066_24200156_24200248_24200989_24201163_24202090_24202220_24202936
transcript_117758.nnic	chr7	+	1518	4	NNC	ENSMUSG00000064264.15	novel	1159	3	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	89.1777251709566	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206404	24215105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214461
transcript_117759.nnic	chr7	+	1481	4	NNC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	150.608395811418	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206404	24215107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214500
transcript_117765.known	chr7	+	1045	3	FSM	ENSMUSG00000064264.15	ENSMUST00000176880.2	1045	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	119	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACGAGGAGGAGGGGGG	NA	False	NA	NA	False	NA	NA	NA	24206430	24214844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24206862_24209947_24210179_24214461
transcript_117766.nic	chr7	+	1295	3	NIC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	184.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206404	24215107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_24206862_24209947_24210179_24214500
transcript_117767.known	chr7	+	1159	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177205.2	1159	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	107	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206554	24215105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24206862_24209970_24210179_24214461
transcript_117768.known	chr7	+	1182	3	FSM	ENSMUSG00000064264.15	ENSMUST00000071361.13	1182	3	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_2	41.5	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206494	24215107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24206862_24209970_24210179_24214500
transcript_117769.known	chr7	+	435	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177228.2	435	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	202.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAAGAGGAGACCACTG	NA	False	NA	NA	False	AATACA	-38	NA	24206523	24214528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24206862_24210109_24210179_24214500
transcript_117773.known	chr7	+	6083	3	FSM	ENSMUSG00000041037.9	ENSMUST00000049020.9	6083	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTGTCTTCTATTTA	NA	False	NA	15	True	AATAAA	-16	NA	24230113	24238025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24230330_24230808_24231341_24232690
transcript_117777.known	chr7	+	2155	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGTTTCTCTCTTAGGAG	NA	False	NA	7	True	AATAAA	-19	NA	24246574	24272863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
transcript_117789.known	chr7	+	2528	19	FSM	ENSMUSG00000051768.10	ENSMUST00000205573.2	2528	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	124.068740902517	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACGGTTTCTCTCTTAG	NA	False	NA	4	True	AATAAA	-16	NA	24245713	24272860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24245796_24246123_24246261_24246417_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
transcript_117792.known	chr7	+	1203	3	FSM	ENSMUSG00000051768.10	ENSMUST00000205561.2	1203	3	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_2	27	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCGCCTCCCCCTCCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	24246622	24260108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24246785_24247214_24247308_24259160
transcript_117794.known	chr7	+	1484	8	FSM	ENSMUSG00000064254.7	ENSMUST00000077191.7	1484	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	37.1247208468856	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGAGTTCTGCTTGCTTTC	6286	False	NA	9	True	AATAAA	-24	NA	24286967	24308350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24287233_24293051_24293437_24293842_24293988_24294424_24294574_24305629_24305760_24307292_24307383_24307776_24307894_24308147
transcript_117797.known	chr7	-	1059	6	FSM	ENSMUSG00000062773.7	ENSMUST00000078001.7	1059	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	1.72046505340853	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCGCGTGCATGCATG	1002	False	NA	NA	False	AATAAA	-21	NA	24371475	24367431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24367828_24367933_24368066_24369138_24369325_24369757_24369899_24370003_24370109_24371376
transcript_117800.known	chr7	+	662	3	FSM	ENSMUSG00000054169.8	ENSMUST00000206847.2	662	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	14	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGTTGGCTCCTTCGAC	1129	False	NA	NA	False	AATAAA	-21	NA	24476652	24484077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24476765_24480294_24480655_24483887
transcript_117801.nnic	chr7	+	753	3	Genic_Genomic	ENSMUSG00000091955.3	novel	485	1	NA	NA	-8315	0	multi-exon	FALSE	canonical	2	5	junction_2	2.5	3777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATGATTAAACTCCTGG	5823	False	NA	NA	False	AATAAA	-34	NA	24553322	24562122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr7_+_24553498_24553668_24553741_24561616
transcript_117802.known	chr7	+	485	1	FSM	ENSMUSG00000091955.3	ENSMUST00000170837.3	485	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1200	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATGATTAAACTCCTGG	NA	False	NA	NA	False	AATAAA	-34	NA	24561637	24562122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24561600_24562100
transcript_117803.known	chr7	+	1619	9	FSM	ENSMUSG00000011349.6	ENSMUST00000011493.6	1619	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.69771416230941	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCGAGAGTTGATTATC	NA	False	NA	4	True	NA	NA	NA	24569481	24577076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24569598_24571902_24572131_24572204_24572360_24573346_24573424_24573622_24573804_24574331_24574459_24575172_24575234_24575373_24575549_24576577
transcript_117811.known	chr7	+	593	7	FSM	ENSMUSG00000040952.17	ENSMUST00000129847.8	593	7	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_3	8759.20174096298	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585613_24587706_24587891_24588331_24588387_24589165
transcript_117817.known	chr7	+	774	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108430.10	774	6	0	0	0	0	multi-exon	FALSE	canonical	3	8873	junction_5	7497.54368843557	6598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24583795	24589231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
transcript_117819.known	chr7	+	633	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108429.8	633	6	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	10447.7852504729	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584138	24589231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24584295_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
transcript_117824.known	chr7	+	604	5	FSM	ENSMUSG00000040952.17	ENSMUST00000153451.9	604	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	11081.527678416	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCTGGACAGGTGAGAGGT	NA	False	NA	NA	False	NA	NA	NA	24584075	24588375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24584280_24584560_24584632_24584876_24584978_24587706_24587891_24588331
transcript_117827.known	chr7	+	1284	5	FSM	ENSMUSG00000040952.17	ENSMUST00000108428.8	1284	5	0	0	0	0	multi-exon	FALSE	canonical	3	12982	junction_1	6509.68167424491	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATCCTGGTCTGGATCTG	NA	False	NA	22	True	AATAAA	-12	NA	24584060	24589227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331
transcript_117829.known	chr7	+	3508	30	FSM	ENSMUSG00000040940.19	ENSMUST00000117796.8	3508	30	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_13	90.8167458773321	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGTGTGTGTGAGGGCG	8429	False	NA	34	True	AATATA	-16	NA	24602336	24626017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24602554_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616225_24616367_24617319_24617426_24618608_24618777_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
transcript_11783.known	chr10	-	4805	31	FSM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	0	0	0	0	multi-exon	FALSE	canonical	1	82	junction_14	55.4957555934586	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTCCCCAT	9208	False	NA	-2	True	ATTAAA	-14	NA	80578098	80542789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80543818_80544291_80544372_80544580_80544703_80545034_80545121_80545233_80545323_80545600_80545791_80546253_80546302_80546522_80546667_80547945_80548042_80548429_80548502_80548598_80548765_80549390_80549465_80549806_80549995_80550080_80550157_80550941_80551014_80551704_80551847_80552307_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568684_80568781_80577729
transcript_117831.known	chr7	+	3195	29	FSM	ENSMUSG00000040940.19	ENSMUST00000206508.2	3195	29	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_11	75.6323006258515	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGTGTGAGGGCGTT	8573	False	NA	36	True	AATATA	-18	NA	24602480	24626019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24602554_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616228_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
transcript_117835.known	chr7	+	3214	29	FSM	ENSMUSG00000040940.19	ENSMUST00000117419.8	3214	29	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	33.6220742600902	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGTGTGTGTGAGGGCG	9924	False	NA	34	True	AATATA	-16	NA	24603831	24626017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24603923_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616225_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
transcript_117854.known	chr7	-	899	5	FSM	ENSMUSG00000003380.12	ENSMUST00000076961.9	899	5	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	24.5051015096857	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTCCTGGTATTTTC	4495	False	NA	-5	True	AATAAA	-24	NA	24672179	24669176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526_24671740_24671951
transcript_117859.known	chr7	-	986	4	FSM	ENSMUSG00000003380.12	ENSMUST00000205871.2	986	4	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	27.3292679903595	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGCCAATACTTTCCT	-3	True	NA	-14	True	AATAAA	-15	NA	24672063	24669185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526
transcript_117860.known	chr7	-	3621	23	FSM	ENSMUSG00000040907.16	ENSMUST00000080882.11	3621	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_18	15.2038490124504	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTGTGTGTGTTATGCTT	NA	False	NA	-1	True	AATATA	-18	NA	24705383	24677591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960_24694160_24696556_24696826_24696937_24697056_24698098_24698234_24698324_24698439_24700001_24700206_24700344_24700405_24700496_24700584_24705179
transcript_117863.known	chr7	-	3763	20	FSM	ENSMUSG00000003378.10	ENSMUST00000003468.10	3763	20	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	1.63751044064253	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGAATACCTGGGTTTTA	9199	False	NA	-6	True	AATAAA	-22	NA	24771717	24709273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24710220_24713010_24713133_24713214_24713344_24714729_24714956_24715232_24715399_24721865_24722040_24722410_24722521_24722707_24722822_24745598_24745803_24757708_24757817_24757918_24758024_24758365_24758519_24759894_24760057_24760154_24760209_24762302_24762482_24764553_24764720_24764797_24764896_24767434_24767600_24767868_24767998_24771464
transcript_117868.known	chr7	+	4140	2	FSM	ENSMUSG00000045252.12	ENSMUST00000179556.2	4140	2	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAATGAGGGTGTGTATT	4955	False	NA	NA	False	AAGAAA	-10	NA	24776629	24782917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24776812_24778959
transcript_117869.known	chr7	+	3145	2	FSM	ENSMUSG00000045252.12	ENSMUST00000053410.11	3145	2	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTTTGTCAGGCCTAG	5034	False	NA	22	True	AATAAA	-18	NA	24776708	24781905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24776908_24778959
transcript_117873.known	chr7	-	1942	6	FSM	ENSMUSG00000054499.10	ENSMUST00000205271.2	1942	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	41.775590959315	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTCCAGGCTCTCCGGTAC	NA	False	NA	-9	True	AATAAA	-26	NA	24920040	24902265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918593_24919188_24919353_24919993
transcript_117874.nnic	chr7	-	1987	6	NIC	ENSMUSG00000054499.10	novel	1942	6	NA	NA	-68	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	36.5316301306142	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTCCAGGCTCTCCGGTAC	NA	False	NA	-9	True	AATAAA	-26	NA	24920108	24902265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918593_24919211_24919353_24919993
transcript_117876.known	chr7	-	1828	5	FSM	ENSMUSG00000054499.10	ENSMUST00000058702.7	1828	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	35.6405667743935	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24919284	24902264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918593_24919188
transcript_117881.known	chr7	-	2260	11	FSM	ENSMUSG00000057177.13	ENSMUST00000071739.12	2260	11	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_10	34.6278789416851	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGGCTGCCTGTG	NA	False	NA	0	True	AATAAA	-21	NA	24937276	24927682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977_24935166_24936802
transcript_117882.nnic	chr7	-	2079	11	NNC	ENSMUSG00000057177.13	novel	2260	11	NA	NA	-11	0	intron_retention	FALSE	canonical	3	64	junction_10	96.9278597721006	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGGCTGCCTGTG	NA	False	NA	0	True	AATAAA	-21	NA	24937287	24927682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977_24935166_24936994
transcript_117885.known	chr7	-	3505	4	FSM	ENSMUSG00000040857.16	ENSMUST00000045847.15	3505	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	2.82842712474619	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGATGCATATGAATGT	4481	False	NA	NA	False	NA	NA	NA	24950186	24941985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24944957_24945058_24945175_24945512_24945748_24950003
transcript_117887.known	chr7	-	690	3	FSM	ENSMUSG00000040857.16	ENSMUST00000116343.3	690	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	3	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCCACTGAGGATCCCC	4512	False	NA	NA	False	NA	NA	NA	24950155	24944871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24945175_24945512_24945748_24950003
transcript_117889.known	chr7	+	6096	20	FSM	ENSMUSG00000005442.14	ENSMUST00000163320.8	6096	20	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_13	27.4875947844843	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGGGCTGCTGGCTTGT	3251	False	NA	12	True	ATTAAA	-14	NA	24981603	24993570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_24982342_24984273_24984424_24984503_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990479_24990768_24990874_24991195_24991488_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
transcript_117892.known	chr7	-	901	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_5	66.0714764478591	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8499	False	NA	-2	True	ATTAAA	-15	NA	24997411	24994473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
transcript_117894.known	chr7	-	859	5	FSM	ENSMUSG00000005447.13	ENSMUST00000148150.8	859	5	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_2	17.4570902500961	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACCCCAACCCACTTCG	8603	False	NA	NA	False	NA	NA	NA	24997307	24994783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796
transcript_117896.known	chr7	+	1240	3	FSM	ENSMUSG00000058741.5	ENSMUST00000080288.5	1240	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGATTTTCAGTGAGT	2125	False	NA	NA	False	AATAAA	-14	NA	25000835	25003557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25000900_25002297_25002923_25003006
transcript_117898.known	chr7	+	10040	41	FSM	ENSMUSG00000045039.10	ENSMUST00000128119.2	10040	41	0	0	0	0	multi-exon	TRUE	canonical	1	8	junction_9	8.91613705592282	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATCGTAACTTCATCTG	NA	False	NA	11	True	AATAAA	-16	NA	25016588	25065342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25017119_25025804_25025969_25026894_25027102_25027909_25028091_25028176_25028266_25029285_25029702_25030110_25030257_25030438_25030562_25033182_25033338_25033553_25033674_25033990_25034136_25034216_25034381_25037198_25037400_25037783_25037985_25038889_25039127_25039643_25039763_25039841_25039974_25040057_25040172_25040396_25040646_25041122_25041323_25041637_25041849_25041944_25042195_25043090_25043224_25045524_25045773_25045850_25045962_25046100_25046220_25046740_25046949_25047648_25047830_25048339_25048504_25049079_25049225_25053150_25053383_25054437_25054562_25054726_25054941_25055158_25055374_25057669_25057878_25058040_25058201_25058478_25058672_25059167_25059339_25059533_25059665_25060078_25060212_25062746
transcript_117900.known	chr7	-	3613	10	FSM	ENSMUSG00000003123.16	ENSMUST00000003207.11	3613	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	4.8099690715363	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTCTGCCTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	25095804	25078951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25079599_25079950_25080382_25082575_25082753_25082877_25083106_25083797_25084090_25084204_25084391_25084604_25084751_25084861_25084953_25087542_25088079_25094925
transcript_117907.known	chr7	-	3656	8	FSM	ENSMUSG00000074272.11	ENSMUST00000098666.9	3656	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	11.2122382116278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCACTTTGTGGGGTTTTC	2848	False	NA	-1	True	AATAAA	-21	NA	25177028	25161131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25163326_25164273_25164306_25165741_25165863_25171222_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
transcript_117910.known	chr7	-	993	6	FSM	ENSMUSG00000074272.11	ENSMUST00000205308.2	993	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	9.60416576283438	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTACACATGCGCGCGCGC	2917	False	NA	NA	False	NA	NA	NA	25176959	25163117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25163326_25164273_25164306_25164892_25164946_25171222_25171499_25175768_25176129_25176895
transcript_117911.known	chr7	-	1061	6	FSM	ENSMUSG00000074272.11	ENSMUST00000206687.2	1061	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	9.62081077664455	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTACACATGCGCGCGCGC	2917	False	NA	NA	False	NA	NA	NA	25176959	25163117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25163326_25164273_25164306_25165741_25165863_25171222_25171499_25175768_25176129_25176895
transcript_117915.known	chr7	+	1465	6	FSM	ENSMUSG00000057229.12	ENSMUST00000077338.12	1465	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	20.2938414303453	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGGCCTTTCCTCCCA	1739	False	NA	39	True	NA	NA	NA	25318838	25324976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25318886_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
transcript_117916.known	chr7	+	2387	6	FSM	ENSMUSG00000057229.12	ENSMUST00000085953.5	2387	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	50.2330568450697	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCCTGTGGCCTTTCCTC	1818	False	NA	36	True	NA	NA	NA	25318917	25324973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25319890_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
transcript_117921.known	chr7	+	1116	1	FSM	ENSMUSG00000057229.12	ENSMUST00000205593.2	1116	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATAAGGACTTGG	1749	False	NA	NA	False	AATGAA	-20	NA	25318848	25319964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25318800_25320000
transcript_117923.known	chr7	-	1899	9	FSM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_4	24.6373699895098	386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTCCTTCGTCTCTG	9682	False	NA	-9	True	AGTAAA	-19	NA	25358406	25329370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25358057
transcript_117928.known	chr7	+	1844	1	FSM	ENSMUSG00000059479.8	ENSMUST00000206824.2	1844	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAAGGCCAGGAGCGAT	9967	False	NA	5	True	NA	NA	NA	25327066	25328910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25327100_25328900
transcript_117932.known	chr7	+	1020	6	FSM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_2	58.9528625259198	1351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25358588	25367457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
transcript_117935.known	chr7	+	682	5	FSM	ENSMUSG00000061286.8	ENSMUST00000205966.2	682	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	557.079606070802	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCACCACCAAGGGGCT	NA	False	NA	NA	False	NA	NA	NA	25358636	25365731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25358809_25362561_25362676_25363672_25363874_25364845_25364987_25365677
transcript_11794.nic	chr10	-	3097	24	ISM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	-52	3850	-52	-2004	5prime_fragment	FALSE	canonical	1	82	junction_7	50.6195640503776	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACAGAAAGGAGAAGGAGAA	9156	False	NA	NA	False	NA	NA	NA	80578150	80546639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_80546667_80547945_80548042_80548429_80548502_80548598_80548765_80549390_80549465_80549806_80549995_80550080_80550157_80550941_80551014_80551704_80551847_80552307_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568684_80568781_80577729
transcript_117941.known	chr7	-	912	3	FSM	ENSMUSG00000061702.11	ENSMUST00000150306.2	912	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACACAAAAATAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	25374544	25369468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25370061_25372849_25373086_25374460
transcript_117942.known	chr7	+	995	4	FSM	ENSMUSG00000063439.8	ENSMUST00000205658.2	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.69967317119759	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTGCCTCCTTGTATC	NA	False	NA	8	True	AATAAA	-19	NA	25380204	25385983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25380404_25380807_25380900_25382715_25382842_25385405
transcript_117943.known	chr7	+	2175	7	FSM	ENSMUSG00000002603.16	ENSMUST00000002678.10	2175	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	3.1446603773522	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGTCTCCGTGTCATT	NA	False	NA	NA	False	ATTAAA	-13	NA	25386426	25404502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_25387649_25391801_25391963_25393647_25393766_25396342_25396421_25396549_25396698_25403549_25403704_25404208
transcript_117948.known	chr7	-	3032	5	FSM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	5.52268050859363	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTCATCTGTTATGTAA	NA	False	NA	-3	True	ATTAAA	-24	NA	25418513	25410530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25418342
transcript_117950.known	chr7	-	1158	4	FSM	ENSMUSG00000002608.9	ENSMUST00000154143.8	1158	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	5.43650214343336	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACGCAGTGTTGACGAA	NA	False	NA	NA	False	NA	NA	NA	25418428	25413558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25413908_25414175_25414446_25415159_25415613_25418342
transcript_117957.known	chr7	-	3784	15	FSM	ENSMUSG00000040725.14	ENSMUST00000206832.2	3784	15	0	0	0	0	multi-exon	FALSE	canonical	3	866	junction_14	88.3957070247654	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAGGGTTGAAACCCT	9542	False	NA	-28	True	AATAAA	-25	NA	25454182	25420589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453765
transcript_117958.known	chr7	-	3354	15	FSM	ENSMUSG00000040725.14	ENSMUST00000043765.14	3354	15	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_14	237.54999473795	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGAGTCGTGGTAGTT	9549	False	NA	NA	False	NA	NA	NA	25454175	25420906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453871
transcript_117959.nnic	chr7	-	3463	15	NNC	ENSMUSG00000040725.14	novel	3784	15	NA	NA	-1500	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_14	261.486810452872	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAGGGTTGAAACCCT	8584	False	NA	-28	True	AATAAA	-25	NA	25455682	25420589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25455586
transcript_117967.nnic	chr7	-	3146	15	NNC	ENSMUSG00000040725.14	novel	3354	15	NA	NA	-1500	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_14	261.486810452872	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGAGTCGTGGTAGTT	8584	False	NA	NA	False	NA	NA	NA	25455682	25420906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25455586
transcript_117978.known	chr7	-	1240	8	FSM	ENSMUSG00000040725.14	ENSMUST00000108401.3	1240	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	386.110907192559	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCACATCCGATTTCTT	9598	False	NA	NA	False	AATAAA	-22	NA	25454126	25436014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25436187_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453765
transcript_117986.known	chr7	-	4265	20	FSM	ENSMUSG00000002602.17	ENSMUST00000002677.11	4265	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	2.08941402539781	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTCTTGTGTCCATT	1402	False	NA	NA	False	CATAAA	-18	NA	25488112	25456697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25458439_25460175_25460313_25460829_25460990_25462708_25462819_25463367_25463490_25463846_25463940_25465942_25466021_25466217_25466314_25469642_25469735_25470057_25470191_25472523_25472551_25472767_25472919_25473508_25473649_25473939_25474151_25477794_25477911_25478048_25478130_25485258_25485436_25486311_25486413_25486715_25486942_25487839
transcript_117989.known	chr7	-	2745	9	FSM	ENSMUSG00000040703.12	ENSMUST00000043314.10	2745	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	4.7368238303741	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGACCCCCTCTGCCTGT	1604	False	NA	-6	True	AATAAA	-18	NA	25516078	25501899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_25503185_25503340_25503483_25505295_25505484_25507468_25507611_25508603_25508784_25508862_25509024_25511026_25511177_25514309_25514476_25515747
transcript_118.known	SIRV4	-	617	2	FSM	SIRV4B	SIRV406	617	2	0	0	0	0	multi-exon	FALSE	canonical	3	2584	junction_1	0	781	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTAAAAATAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	5158	3637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4_-_4104_5007
transcript_118014.nnic	chr7	-	2141	11	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24741	-326	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	22.2216111027081	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTTTGGTGTCTTGTGC	NA	False	NA	-2	True	NA	NA	NA	26410603	26364977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26389739_26389834_26390877_26390954_26410317
transcript_118019.nnic	chr7	-	2148	10	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24824	-326	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_9	17.7332776384533	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTTTGGTGTCTTGTGC	NA	False	NA	-2	True	NA	NA	NA	26410686	26364977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26389739_26389834_26410317
transcript_118022.known	chr7	+	1631	9	FSM	ENSMUSG00000078787.10	ENSMUST00000108385.3	1631	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.78107443266087	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAACTTTTATTTCTTGG	NA	False	NA	NA	False	AATACA	-18	NA	26854506	26858093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_26854729_26855057_26855221_26855581_26855732_26855940_26856102_26856642_26856820_26856895_26857038_26857138_26857327_26857576_26857719_26857807
transcript_118032.known	chr7	-	1756	6	FSM	ENSMUSG00000058709.12	ENSMUST00000108382.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_5	218.816452763498	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGTTTTGACCTGGG	NA	False	NA	NA	False	NA	NA	NA	26865838	26858412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26865740
transcript_118033.known	chr7	-	2107	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_5	57.8840219749803	1269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866227	26858082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
transcript_118035.nnic	chr7	-	1762	6	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	232.127206505399	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866241	26858082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864403_26865154_26866108
transcript_118051.nnic	chr7	-	2799	12	Fusion	ENSMUSG00000053291.16_ENSMUSG00000058709.12	novel	2107	6	NA	NA	0	0	multi-exon	FALSE	canonical	2	7	junction_5	201.262995576509	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26878321	26858082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
transcript_118059.known	chr7	-	1690	9	FSM	ENSMUSG00000095538.2	ENSMUST00000154724.2	1690	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	300.324381918951	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTTTCGGCCTCTGTC	NA	False	NA	-7	True	CATAAA	-13	NA	26880511	26867854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26879593_26879705_26880124_26880259_26880346
transcript_11806.nic	chr10	-	2859	21	ISM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	-52	5852	-52	1760	5prime_fragment	FALSE	canonical	1	82	junction_4	53.0443210909519	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGACCAAAGAGAGAG	9156	False	NA	-26	True	NA	NA	NA	80578150	80548641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_80548765_80549390_80549465_80549806_80549995_80550080_80550157_80550941_80551014_80551704_80551847_80552307_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568684_80568781_80577729
transcript_118063.known	chr7	-	1192	8	FSM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	28.7402157263998	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	-1	True	CATAAA	-19	NA	26878321	26867848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
transcript_118065.known	chr7	-	1372	7	FSM	ENSMUSG00000053291.16	ENSMUST00000134462.8	1372	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	25.5451669705946	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCGGCCTCTGTCATT	NA	False	NA	-4	True	CATAAA	-16	NA	26878240	26867851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26878151
transcript_118068.known	chr7	-	572	4	FSM	ENSMUSG00000089661.10	ENSMUST00000121848.2	572	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTGTCTCTTTGGTTTT	NA	False	NA	-2	True	AATACA	-16	NA	26880582	26879168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
transcript_118070.known	chr7	+	1748	7	FSM	ENSMUSG00000078786.10	ENSMUST00000179391.8	1748	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	4.48763733927875	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGAGACTTGGTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	26895205	26903745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_26895533_26896330_26896792_26899978_26900048_26900444_26900570_26901832_26901963_26902051_26902123_26903180
transcript_118075.known	chr7	-	1336	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	2611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895670	26886431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
transcript_118078.known	chr7	-	3247	7	FSM	ENSMUSG00000003752.10	ENSMUST00000003850.8	3247	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	5.28099317258495	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGGGTATTTTCTTGG	NA	False	NA	-2	True	AATAAA	-15	NA	26928053	26906596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26907870_26911736_26911809_26912384_26912487_26913800_26914006_26916376_26916591_26919024_26919128_26926775
transcript_118086.known	chr7	-	1690	1	FSM	ENSMUSG00000061479.16	ENSMUST00000206439.2	1690	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	26895578	26893888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26893900_26895600
transcript_118087.known	chr7	-	2919	1	FSM	ENSMUSG00000003752.10	ENSMUST00000206441.2	2919	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATACAATCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	26928086	26925167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_26925200_26928100
transcript_118090.known	chr7	+	2181	15	FSM	ENSMUSG00000003762.14	ENSMUST00000003860.13	2181	15	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_1	14.7544528041883	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTTCTCTCTGTGCTA	NA	False	NA	22	True	AATAAA	-22	NA	26932447	26957375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_26932599_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
transcript_118093.nnic	chr7	+	2137	15	NNC	ENSMUSG00000003762.14	novel	2181	15	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	26.4262547247148	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTTCTTTTCTCTCTG	NA	False	NA	17	True	AATAAA	-17	NA	26932595	26957370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_26932708_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
transcript_1181.known	chr1	-	1348	1	FSM	ENSMUSG00000058407.13	ENSMUST00000194692.2	1348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	38036343	38034995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_38035000_38036300
transcript_118100.nnic	chr7	+	2714	11	NNC	ENSMUSG00000063160.13	novel	2760	10	NA	NA	-10	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	28.5987761975928	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCACTGGGAAATCAAGG	NA	False	NA	7	True	AATAAA	-16	NA	26958139	26981564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_26958387_26961592_26961678_26964300_26964441_26965979_26966055_26966151_26966227_26968203_26968345_26973379_26973570_26976051_26976358_26978928_26979052_26980178_26980644_26980697
transcript_118103.known	chr7	+	2760	10	FSM	ENSMUSG00000063160.13	ENSMUST00000079258.7	2760	10	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_4	11.8415464455544	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTGGGAAATCAAGGTG	NA	False	NA	9	True	AATAAA	-18	NA	26958149	26981566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_26958387_26961592_26961678_26964300_26964441_26965979_26966055_26966151_26966227_26968203_26968345_26973379_26973570_26976051_26976358_26978928_26979052_26980178
transcript_118107.known	chr7	+	2276	14	FSM	ENSMUSG00000003762.14	ENSMUST00000108378.10	2276	14	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	13.8260537867321	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCAGTTCTTTTCTCTCT	NA	False	NA	16	True	AATAAA	-16	NA	26932637	26957369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
transcript_118110.known	chr7	-	5386	33	FSM	ENSMUSG00000040488.19	ENSMUST00000038618.13	5386	33	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_32	158.898146917294	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTCTGCCTGCCTTTTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	27037117	27004560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27034261_27034372_27034821_27034961_27035077_27035137_27036852
transcript_118115.known	chr7	-	5118	30	FSM	ENSMUSG00000040488.19	ENSMUST00000121175.8	5118	30	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_24	119.840530186521	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCGGCCTCTGCCTGCCTT	NA	False	NA	-6	True	ATTAAA	-16	NA	27033088	27004564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27032779
transcript_118122.known	chr7	-	4726	29	FSM	ENSMUSG00000040488.19	ENSMUST00000118583.8	4726	29	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_23	117.369222706702	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGAACCTCATTACAG	NA	False	NA	NA	False	AATAAA	-35	NA	27033038	27005422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27032779
transcript_118131.known	chr7	-	3643	23	FSM	ENSMUSG00000040488.19	ENSMUST00000206413.2	3643	23	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	89.041092287227	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGCCAGTTTGTAACT	NA	False	NA	NA	False	NA	NA	NA	27033073	27010984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27011238_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392_27028468_27028803_27028907_27028995_27029244_27029551_27029744_27032779
transcript_118133.nnic	chr7	-	2102	9	NNC	ENSMUSG00000040488.19	novel	5377	33	NA	NA	-601	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_8	184.947289788199	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCGGCCTCTGCCTGCC	NA	False	NA	-8	True	ATTAAA	-14	NA	27010704	27004566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27010313
transcript_11814.nic	chr10	-	2552	19	ISM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	-52	7127	-52	485	5prime_fragment	FALSE	canonical	1	82	junction_2	54.1573211311155	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAGAAGGAGAAGGGC	9156	False	NA	NA	False	NA	NA	NA	80578150	80549916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_80549995_80550080_80550157_80550941_80551014_80551704_80551847_80552307_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568684_80568781_80577729
transcript_118140.known	chr7	-	2358	18	FSM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_5	29.8825845289775	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTATAGTCTTGGTTTG	NA	False	NA	-28	True	AATAAA	-17	NA	27055444	27041557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
transcript_118147.known	chr7	-	2412	17	FSM	ENSMUSG00000089832.9	ENSMUST00000123190.8	2412	17	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	84.1649932795696	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTTTATAGTCTTGG	NA	False	NA	-32	True	AATAAA	-13	NA	27055379	27041561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27041970_27042070_27042183_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27055052_27055295
transcript_118153.nic	chr7	-	2188	17	NIC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	85.4033627850801	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTATAGTCTTGGTTTG	NA	False	NA	-28	True	AATAAA	-17	NA	27055445	27041557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
transcript_118161.known	chr7	-	1140	6	FSM	ENSMUSG00000089832.9	ENSMUST00000148933.8	1140	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	134.483604948707	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACTGTTTATAGTCTTG	NA	False	NA	-33	True	AATAAA	-12	NA	27045027	27041562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27044841
transcript_118165.known	chr7	+	1028	5	FSM	ENSMUSG00000040466.17	ENSMUST00000037399.16	1028	5	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_1	67.0834368529222	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATTGATTGATTGATTG	NA	False	NA	NA	False	TTTAAA	-18	NA	27147402	27165569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27161991_27162121_27165144
transcript_118167.known	chr7	+	951	4	FSM	ENSMUSG00000040466.17	ENSMUST00000108358.8	951	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	187.642094306037	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTGATTATTTTGGT	NA	False	NA	60	True	NA	NA	NA	27147456	27165423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27147622_27158680_27159059_27161991_27162121_27165144
transcript_118169.known	chr7	+	509	3	FSM	ENSMUSG00000040466.17	ENSMUST00000133750.8	509	3	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_1	60	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGAGCACCAACTGTG	NA	False	NA	9	True	ATTAAA	-22	NA	27147478	27159188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27147622_27158680_27158846_27158987
transcript_118170.known	chr7	+	1504	1	FSM	ENSMUSG00000040466.17	ENSMUST00000207799.2	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	27147485	27148989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27147500_27149000
transcript_118171.known	chr7	+	1329	2	FSM	ENSMUSG00000055200.8	ENSMUST00000068641.8	1329	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAATTGTAATTAAATCT	NA	False	NA	84	True	AATAAA	-16	NA	27173192	27176789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27173297_27175564
transcript_118172.known	chr7	+	1233	2	FSM	ENSMUSG00000008384.9	ENSMUST00000008528.8	1233	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTTCTTTGCAT	6589	False	NA	12	True	ATTAAA	-22	NA	27186334	27189741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27186504_27188677
transcript_118173.known	chr7	+	366	2	FSM	ENSMUSG00000008384.9	ENSMUST00000135881.2	366	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGCCGCCTGAGCC	7054	False	NA	NA	False	NA	NA	NA	27186799	27188932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27186911_27188677
transcript_118175.known	chr7	+	4841	7	FSM	ENSMUSG00000053198.15	ENSMUST00000098644.9	4841	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	15.3124858276578	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACCACATGGTGGCTCA	1761	False	NA	NA	False	NA	NA	NA	27198748	27219639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27198791_27203957_27204002_27204089_27204189_27204304_27204432_27207371_27207529_27214675_27214873_27215464
transcript_118177.known	chr7	+	4497	3	FSM	ENSMUSG00000053198.15	ENSMUST00000065487.7	4497	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATGTGTCTTGGTTCTCG	NA	False	NA	NA	False	AATAAA	-15	NA	27207230	27219466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27207529_27214675_27214873_27215464
transcript_118179.nnic	chr7	+	1992	4	Fusion	ENSMUSG00000053198.15_ENSMUSG00000040424.16	novel	2926	3	NA	NA	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.62466929133727	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTCCTGCCTGTTACC	NA	False	NA	NA	False	AATAAA	-14	NA	27207230	27230600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_+_27207529_27227720_27228078_27228373_27229223_27230112
transcript_118180.known	chr7	+	2409	4	FSM	ENSMUSG00000040424.16	ENSMUST00000108353.9	2409	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.62466929133727	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTCCTGCCTGTTACC	NA	False	NA	NA	False	AATAAA	-14	NA	27222691	27230600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27223407_27227720_27228078_27228373_27229223_27230112
transcript_118185.known	chr7	-	2282	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252637	27231424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
transcript_118186.nic	chr7	-	2142	14	NIC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_13	126.954541554455	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252474	27231424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244711_27252422
transcript_118187.known	chr7	-	2297	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117611.8	2297	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	174.958693349883	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252643	27231424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27248434_27248519_27252422
transcript_118189.nic	chr7	-	2186	13	NIC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	130.304211367093	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252616	27231424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27252422
transcript_118195.nnic	chr7	+	2857	11	NNC	ENSMUSG00000049643.16	novel	1989	11	NA	NA	-23	0	intron_retention	FALSE	canonical	2	11	junction_4	129.933983237643	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	373	False	NA	NA	False	AATAAA	-20	NA	27252634	27281524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_27252779_27255838_27255960_27259976_27260029_27260463_27260597_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
transcript_118199.known	chr7	+	1989	11	FSM	ENSMUSG00000049643.16	ENSMUST00000187960.7	1989	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_10	97.3365296278843	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	449	False	NA	NA	False	AATAAA	-20	NA	27252710	27281524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761_27280117_27280775
transcript_1182.known	chr1	-	4262	23	FSM	ENSMUSG00000026082.12	ENSMUST00000027251.12	4262	23	0	0	0	0	multi-exon	TRUE	canonical	3	101	junction_15	29.8629099122934	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTTTTTTTTTTCTTGTG	NA	False	NA	0	True	AATAAA	-22	NA	38168743	38091866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_38092280_38092696_38092800_38092920_38093078_38093164_38093377_38093825_38093947_38094371_38094606_38095344_38095548_38095797_38095964_38096754_38096858_38098202_38098376_38102195_38102417_38106580_38106701_38110423_38110579_38113395_38113525_38118370_38118480_38122784_38122902_38124625_38124734_38127051_38127756_38131143_38131297_38137933_38138103_38146648_38146776_38147484_38147549_38168542
transcript_118207.known	chr7	+	2701	10	FSM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	25.2899238218224	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	396	False	NA	NA	False	AATAAA	-20	NA	27252657	27281524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
transcript_118224.known	chr7	+	340	4	FSM	ENSMUSG00000049643.16	ENSMUST00000186501.2	340	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	145.525102836437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTGTCCTGCAGTATGC	7134	False	NA	NA	False	NA	NA	NA	27273891	27279845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27273927_27274015_27274166_27278137_27278209_27279761
transcript_118227.known	chr7	+	426	2	FSM	ENSMUSG00000049643.16	ENSMUST00000190903.2	426	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGTGTGTTTGTT	433	False	NA	NA	False	AGTAAA	-21	NA	27252694	27253496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27252779_27253154
transcript_11823.nic	chr10	+	6457	29	NIC	ENSMUSG00000061589.15	novel	6808	28	NA	NA	-20	68	combination_of_known_junctions	FALSE	canonical	3	39	junction_27	19.5948764648688	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACTGGCCAGGGACCCT	1635	False	NA	NA	False	NA	NA	NA	80591019	80630293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_80591359_80600435_80600480_80601996_80602072_80604438_80604503_80606971_80607201_80608937_80609033_80609539_80609603_80613389_80613446_80614096_80614177_80616676_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80627976_80628608_80629340
transcript_118244.known	chr7	+	4544	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTTGTACTTTGGTG	NA	False	NA	6	True	AATAAA	-17	NA	27290976	27340251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
transcript_118249.known	chr7	+	2923	14	FSM	ENSMUSG00000004056.16	ENSMUST00000051356.12	2923	14	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_1	140.806720522774	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTCCACATTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	27305282	27338878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27305363_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
transcript_11825.known	chr10	+	6808	28	FSM	ENSMUSG00000061589.15	ENSMUST00000105336.9	6808	28	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_7	16.1546877685662	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTTCTCAGTGCCAGTT	1655	False	NA	16	True	AATAAA	-20	NA	80591039	80631295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80591359_80600435_80600480_80601996_80602072_80604438_80604503_80606971_80607201_80608937_80609033_80609539_80609603_80613389_80613446_80614096_80614177_80616676_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80629340
transcript_118271.known	chr7	-	3682	10	FSM	ENSMUSG00000040390.14	ENSMUST00000036453.14	3682	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	25.4209012865835	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTGTGTGTGCGTCC	NA	False	NA	0	True	ATTAAA	-23	NA	27374019	27355799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27356412_27357276_27357958_27358254_27358368_27358445_27358600_27360959_27361077_27362649_27362897_27363822_27363999_27364374_27364524_27367773_27367955_27372767
transcript_118277.nic	chr7	-	2047	4	ISM	ENSMUSG00000040390.14	ENSMUST00000108341.2	3403	11	-45	7494	-45	0	5prime_fragment	FALSE	canonical	3	11	junction_2	33.0891052899423	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTTGCAAGGTGTAGGT	NA	False	NA	NA	False	ATTAAA	-24	NA	27374068	27363582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_27363999_27364374_27364524_27367773_27367955_27372767
transcript_118279.nnic	chr7	+	579	3	NNC	ENSMUSG00000007944.9	novel	2052	3	NA	NA	-6362	-1140	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	1.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTCCTTTGTGTGGTCT	NA	False	NA	9	True	NA	NA	NA	27346977	27355631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_27347078_27354336_27354520_27355335
transcript_118280.known	chr7	+	2052	3	FSM	ENSMUSG00000007944.9	ENSMUST00000008088.9	2052	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAGCTGTACCCCAGTT	NA	False	NA	NA	False	NA	NA	NA	27353339	27356771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27353773_27354336_27354520_27355335
transcript_118281.nic	chr7	-	1841	3	NIC	ENSMUSG00000040390.14	novel	712	3	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	40.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTGGATTAAAAAAGAAAAGA	NA	False	NA	NA	False	ATTAAA	-2	NA	27374033	27363604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_27363999_27367773_27367955_27372767
transcript_118283.known	chr7	-	1621	2	FSM	ENSMUSG00000040390.14	ENSMUST00000138243.2	1621	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCACTGCGTAGTCATTGA	NA	False	NA	0	True	ACTAAA	-17	NA	27374006	27367572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27367955_27372767
transcript_118284.known	chr7	+	4612	6	FSM	ENSMUSG00000057093.15	ENSMUST00000120004.8	4612	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	18.2362276800878	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTGAGTGATCTTCT	NA	False	NA	7	True	NA	NA	NA	27388764	27405909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27388912_27390639_27390721_27391906_27391960_27392906_27393034_27398077_27398177_27401804
transcript_118291.nnic	chr7	+	3800	6	NNC	ENSMUSG00000037640.16	novel	811	6	NA	NA	-1	1225	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	64.2588515303534	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGTGTCTGGCTCCATT	NA	False	NA	34	True	NA	NA	NA	27430812	27451111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592_27449574_27449654
transcript_118293.known	chr7	+	5896	5	FSM	ENSMUSG00000037640.16	ENSMUST00000108336.8	5896	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	38.9422649572415	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGCTGAGTATTTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	27430813	27453127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592
transcript_118297.known	chr7	+	2727	5	FSM	ENSMUSG00000037640.16	ENSMUST00000042641.14	2727	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	62.997519792449	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGCATGAGAAAAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	27430935	27449886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27431090_27436360_27436414_27437727_27437855_27440381_27440481_27447592
transcript_118301.known	chr7	+	632	3	FSM	ENSMUSG00000109143.2	ENSMUST00000208208.2	632	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	10	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAATTATATTCACACAA	2435	False	NA	NA	False	NA	NA	NA	27465097	27470397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27465209_27468664_27468718_27469929
transcript_118305.known	chr7	+	3437	5	FSM	ENSMUSG00000078779.5	ENSMUST00000205701.2	3437	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	40.2639727299729	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAATACACAAGCCTA	408	False	NA	NA	False	AAGAAA	-4	NA	27538031	27555863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27538135_27542259_27542313_27543709_27543837_27545828_27545928_27552808
transcript_118310.known	chr7	+	3511	5	FSM	ENSMUSG00000020420.9	ENSMUST00000205534.2	3511	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	11.4127122105133	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGTAAGAAAAATAT	3327	False	NA	NA	False	NA	NA	NA	27560009	27580250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27560182_27561961_27562015_27562813_27562941_27564994_27565094_27577190
transcript_118314.known	chr7	-	3940	6	FSM	ENSMUSG00000063047.10	ENSMUST00000206685.2	3940	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	22.29798197147	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAGTAAAAACTATAA	NA	False	NA	NA	False	TTTAAA	-28	NA	27678572	27660785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676164_27676259_27678514
transcript_118317.nic	chr7	-	535	6	NIC	ENSMUSG00000063047.10	novel	3940	6	NA	NA	-19	-2089	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	18.9166593245213	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGCATAAAGCAATTAATAA	NA	False	NA	NA	False	AATAAA	-15	NA	27678615	27664221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676176_27676259_27678514
transcript_118319.nnic	chr7	-	4161	7	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-46	1650	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	46.6491038380041	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGAGTCCATTAAATATT	NA	False	NA	-3	True	AATAAA	-25	NA	27713586	27686486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_27689948_27704643_27704743_27704891_27705052_27706738_27706866_27707808_27707862_27711760_27711876_27713440
transcript_118322.known	chr7	-	6163	6	FSM	ENSMUSG00000096916.8	ENSMUST00000180502.8	6163	6	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_5	35.6482818660311	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATTGCAAACTCTTAATG	NA	False	NA	NA	False	AATAAA	-43	NA	27713540	27684278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713440
transcript_118324.known	chr7	-	1440	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	0	0	0	0	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27749526	27741131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
transcript_118329.nic	chr7	-	1039	9	ISM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	35	728	-10	153	5prime_fragment	FALSE	canonical	3	2113	junction_3	109.226756680769	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATTCCCACTCCCTGAC	NA	False	NA	NA	False	NA	NA	NA	27749491	27741859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
transcript_11833.known	chr10	+	781	9	FSM	ENSMUSG00000020211.16	ENSMUST00000151928.8	781	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_7	448.68263770175	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCACCTCCCAGCCTCCC	4886	False	NA	NA	False	NA	NA	NA	80634565	80639841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80634640_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639634_80639723_80639805
transcript_118343.known	chr7	+	1197	9	FSM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	0	0	0	0	multi-exon	FALSE	canonical	3	2081	junction_3	279.620725269069	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8531	False	NA	0	True	ATTAAA	-14	NA	27869134	27878694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
transcript_118357.known	chr7	+	2411	1	FSM	ENSMUSG00000046865.8	ENSMUST00000207956.2	2411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGGAAAAAAAATGCCC	8543	False	NA	NA	False	NA	NA	NA	27869146	27871557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27869100_27871600
transcript_118358.nnic	chr7	+	2458	12	NNC	ENSMUSG00000002409.19	novel	2534	11	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	5.32730375417586	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCCTGAGCGTTTGCA	NA	False	NA	NA	False	AGTAAA	-14	NA	27878885	27886719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_27879066_27880933_27881098_27881785_27881906_27882003_27882193_27882488_27882637_27883665_27883953_27884492_27884640_27884720_27884862_27885138_27885175_27885258_27885455_27885786_27885894_27885976
transcript_118360.known	chr7	+	2534	11	FSM	ENSMUSG00000002409.19	ENSMUST00000085901.13	2534	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	4.15210789840534	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCCTGAGCGTTTGCA	NA	False	NA	NA	False	AGTAAA	-14	NA	27878893	27886719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27879066_27880933_27881098_27881785_27881906_27882003_27882193_27882488_27882637_27883665_27883953_27884492_27884640_27884720_27884862_27885138_27885455_27885786_27885894_27885976
transcript_118361.known	chr7	+	2018	11	FSM	ENSMUSG00000002409.19	ENSMUST00000172761.8	2018	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	5.57135531087365	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCCCCCTCCCTGGGGC	NA	False	NA	NA	False	NA	NA	NA	27878918	27886348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27879066_27880933_27881098_27881785_27881906_27882003_27882193_27882488_27882637_27883665_27883953_27884492_27884640_27884720_27884862_27885258_27885455_27885786_27885894_27885976
transcript_118363.known	chr7	+	1751	1	FSM	ENSMUSG00000070705.4	ENSMUST00000094651.4	1751	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTGGGTTGTTTGAAA	NA	False	NA	NA	False	AATGAA	-15	NA	27977163	27978914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_27977200_27978900
transcript_118364.known	chr7	-	2618	9	FSM	ENSMUSG00000003436.12	ENSMUST00000108315.4	2618	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	6.12372435695795	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGAACTTTGTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	28001663	27992977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_27993352_27993465_27993551_27993768_27994349_27995712_27995936_27997943_27998162_27998317_27998561_27999591_27999650_28000708_28000991_28001108
transcript_118365.known	chr7	-	1515	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	0	0	0	0	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	463	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCGTGTGTGGCTCTGT	2656	False	NA	-1	True	NA	NA	NA	28011497	28004940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
transcript_118388.known	chr7	-	3513	30	FSM	ENSMUSG00000003435.10	ENSMUST00000003527.10	3513	30	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_29	71.450522531579	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	28038144	28014318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776_28037861_28038119
transcript_1184.known	chr1	+	7797	24	FSM	ENSMUSG00000026083.13	ENSMUST00000027252.8	7797	24	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_9	76.9774965275217	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTCAGACCCTCGGCC	1289	False	NA	NA	False	AATAAA	-16	NA	38037090	38094660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38088256_38088422_38089267_38089407_38090203_38090366_38090686
transcript_11843.nic	chr10	-	1201	6	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	211	junction_2	375.955529285047	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATGTCGGAATGAGT	NA	False	NA	-6	True	AATAAA	-14	NA	80634440	80631935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633743_80633812_80633914
transcript_118435.known	chr7	-	3755	29	FSM	ENSMUSG00000003435.10	ENSMUST00000209141.2	3755	29	0	0	0	0	multi-exon	FALSE	canonical	3	668	junction_13	69.0304945924152	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGTGTGTACGAAGAG	NA	False	NA	-15	True	AATAAA	-14	NA	28038131	28014322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776
transcript_118436.known	chr7	+	1109	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	0	0	0	0	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	1480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTCTGGCCTTTATGGT	NA	False	NA	NA	False	NA	NA	NA	28050076	28052580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
transcript_118441.known	chr7	+	628	4	FSM	ENSMUSG00000037563.16	ENSMUST00000152918.8	628	4	0	0	0	0	multi-exon	FALSE	canonical	3	20184	junction_3	558.517283130572	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051836_28051918
transcript_118445.known	chr7	+	518	4	FSM	ENSMUSG00000037563.16	ENSMUST00000155805.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	19383	junction_2	895.518844022838	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050348	28052121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28050519_28051601_28051699_28051787_28051836_28051918
transcript_118447.nic	chr7	-	5231	20	NIC	ENSMUSG00000037552.18	novel	5511	19	NA	NA	-78	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_17	6.95454175122481	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGCCTTTCTTG	NA	False	NA	-2	True	NA	NA	NA	28072102	28059029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069923_28070302_28070468_28070539_28070671_28071284
transcript_118449.known	chr7	-	4880	19	FSM	ENSMUSG00000037552.18	ENSMUST00000119990.8	4880	19	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_17	6.29643246040129	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGCCTTTCTTG	NA	False	NA	-2	True	NA	NA	NA	28071919	28059029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069920_28070539_28070671_28071284
transcript_11845.known	chr10	-	1260	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	1018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634460	80631932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
transcript_118451.known	chr7	-	4623	19	FSM	ENSMUSG00000037552.18	ENSMUST00000094644.11	4623	19	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_17	6.01156293229048	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTTTTGCCTTTCTTGA	NA	False	NA	-1	True	NA	NA	NA	28071658	28059028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28060687_28061232_28062134_28062250_28062425_28063722_28063740_28063895_28063935_28064009_28064058_28064149_28064252_28064341_28064376_28064706_28064794_28064877_28064971_28067059_28067261_28067398_28067537_28067715_28067867_28068103_28068151_28068245_28068313_28069485_28069587_28069662_28069923_28070539_28070671_28071284
transcript_118455.nnic	chr7	-	778	5	NNC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	18	-590	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	249.415692168717	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGGTTCCTGTTGCTGA	NA	False	NA	-19	True	AATGAA	-19	NA	28092115	28086160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_28086450_28086623_28086729_28090236_28090322_28090514_28090574_28091875
transcript_118456.known	chr7	-	1281	4	FSM	ENSMUSG00000003444.9	ENSMUST00000003536.9	1281	4	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_2	10.3387082795139	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTAGCTCCAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	28092133	28085570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28086450_28090236_28090322_28090514_28090574_28091875
transcript_118457.known	chr7	-	2790	2	FSM	ENSMUSG00000044786.7	ENSMUST00000051241.7	2790	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAAATTTGTCTTTTTC	5673	False	NA	-2	True	AATAAA	-18	NA	28079678	28076208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28077919_28078598
transcript_118461.known	chr7	+	2003	14	FSM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_5	16.9726546514433	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTAAAGTCTCTGTTCC	569	False	NA	20	True	AATAAA	-21	NA	28092375	28098813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
transcript_118463.known	chr7	-	4391	13	FSM	ENSMUSG00000109336.2	ENSMUST00000208199.2	4391	13	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	85.244582753914	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAAAGACTCTTCATTTT	6636	False	NA	-8	True	NA	NA	NA	28135616	28098946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28101043_28101248_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860_28123263_28135562
transcript_118470.nic	chr7	-	4026	12	NIC	ENSMUSG00000109336.2	novel	4391	13	NA	NA	-121	-701	intron_retention	FALSE	canonical	3	429	junction_11	37.2212504841429	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCCCTGCACTATCAGC	6479	False	NA	NA	False	NA	NA	NA	28135773	28099674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860_28123263_28135562
transcript_118480.known	chr7	+	657	7	FSM	ENSMUSG00000060791.16	ENSMUST00000108292.9	657	7	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	45.6070170039655	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACATGGTATCTGCAAAAT	1815	False	NA	NA	False	AATAAA	-26	NA	28136871	28145971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28137000_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_118481.known	chr7	+	637	7	FSM	ENSMUSG00000060791.16	ENSMUST00000078845.13	637	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	149.1011029097	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAACGACATGGTATCT	146	False	NA	NA	False	AATAAA	-19	NA	28140351	28145964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28140467_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_118484.known	chr7	+	477	6	FSM	ENSMUSG00000060791.16	ENSMUST00000108289.8	477	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	171.128723480309	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCAAGAGCGAAATAAAGG	1855	False	NA	NA	False	NA	NA	NA	28136911	28145928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28137000_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_118490.nnic	chr7	+	3322	5	NNC	ENSMUSG00000030600.16	novel	3060	2	NA	NA	-3619	0	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_1	26.5706605111728	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTGTGAGTGTGTGTT	359	False	NA	28	True	ATTAAA	-32	NA	28147785	28167667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_28147929_28153921_28153955_28157383_28157439_28158051_28159489_28166013
transcript_118494.nic	chr7	+	3322	5	NIC	ENSMUSG00000030600.16	novel	812	4	NA	NA	-78	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	6.68954408012983	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTGTGAGTGTGTGTT	3900	False	NA	28	True	ATTAAA	-32	NA	28151326	28167667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_28151470_28153921_28153955_28157383_28157439_28158051_28159489_28166013
transcript_118499.known	chr7	+	3060	2	FSM	ENSMUSG00000030600.16	ENSMUST00000108288.9	3060	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTGTGAGTGTGTGTT	90	False	NA	28	True	ATTAAA	-32	NA	28158082	28167667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28159489_28166013
transcript_118500.known	chr7	+	971	2	FSM	ENSMUSG00000099417.2	ENSMUST00000190841.2	971	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAAAGGC	4392	False	NA	NA	False	AATAAA	-8	NA	28191974	28197138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28192135_28196327
transcript_118511.nic	chr7	-	3072	11	NIC	ENSMUSG00000030602.14	novel	2899	10	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_9	227.845759231986	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTATGTGTGTG	4563	False	NA	-5	True	ATTAAA	-19	NA	28297643	28258245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28269596_28269739_28297459
transcript_11852.known	chr10	-	533	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219378.2	533	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	475.904664822693	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTGGACTGACCCTCT	NA	False	NA	NA	False	NA	NA	NA	80634128	80632259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633914
transcript_118523.known	chr7	-	2899	10	FSM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	0	0	0	0	multi-exon	TRUE	canonical	3	622	junction_9	35.4843036069349	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTATGTGTGTGGT	4596	False	NA	-3	True	ATTAAA	-21	NA	28297610	28258243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28297459
transcript_11853.known	chr10	-	1261	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219767.2	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	144.890260197157	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATGTCGGAATGAGT	NA	False	NA	-6	True	AATAAA	-14	NA	80634394	80631935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633812_80633914
transcript_118537.known	chr7	-	1923	13	FSM	ENSMUSG00000037469.12	ENSMUST00000040112.5	1923	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	2.11476292340825	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACACACACTTCCACTTGG	8313	False	NA	NA	False	AATAAA	-24	NA	28330440	28307061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28307431_28310410_28310549_28313643_28313716_28313817_28313886_28313960_28314019_28314104_28314213_28314285_28314401_28314497_28314561_28314788_28314913_28315905_28316089_28316477_28316679_28328883_28329136_28330268
transcript_118539.nic	chr7	+	1255	6	NIC	ENSMUSG00000037463.15	novel	1946	6	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	19.975985582694	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTGTTTGTTT	8772	False	NA	NA	False	GATAAA	-17	NA	28392200	28397386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_28392398_28392694_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397053
transcript_118540.known	chr7	+	1946	6	FSM	ENSMUSG00000037463.15	ENSMUST00000039998.11	1946	6	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_2	20.7460839678239	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCATATCTTTTTCTT	8845	False	NA	NA	False	AATAAA	-19	NA	28392273	28398763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28392398_28392694_28393076_28394158_28394268_28394430_28394527_28396064_28396201_28397663
transcript_118547.known	chr7	+	1948	5	FSM	ENSMUSG00000037463.15	ENSMUST00000108281.8	1948	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	9.31396800509858	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTCATATCTTTTT	9140	False	NA	NA	False	AATAAA	-16	NA	28392568	28398760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
transcript_118548.known	chr7	+	458	2	FSM	ENSMUSG00000037463.15	ENSMUST00000127368.2	458	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTGTTTGTTT	3036	False	NA	NA	False	GATAAA	-17	NA	28396075	28397386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28396201_28397053
transcript_11855.nic	chr10	-	1314	5	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	20	0	intron_retention	FALSE	canonical	3	953	junction_4	141.850934082226	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATGTCGGAATGAGT	NA	False	NA	-6	True	AATAAA	-14	NA	80634440	80631935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80632357_80632424_80632657_80633606_80633674_80633743_80633812_80633914
transcript_118550.known	chr7	+	1806	8	FSM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	33.4310133418242	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416256	28437563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
transcript_118551.known	chr7	+	1958	7	FSM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	22.6838170411321	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416228	28437569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
transcript_118552.known	chr7	+	1563	7	FSM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	37.5340586075574	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416297	28437569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28437089
transcript_118562.known	chr7	-	722	3	FSM	ENSMUSG00000045948.9	ENSMUST00000056078.9	722	3	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_2	218	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGTGTGCGGTGTCTGT	1644	False	NA	-6	True	AATAAA	-23	NA	28441245	28439066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28439665_28440911_28440980_28441189
transcript_118566.known	chr7	-	883	2	FSM	ENSMUSG00000045948.9	ENSMUST00000171183.2	883	2	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_1	0	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1694	False	NA	-5	True	AATAAA	-24	NA	28441195	28439065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28439665_28440911
transcript_118568.nic	chr7	+	2378	16	NIC	ENSMUSG00000070699.6	novel	1868	16	NA	NA	-60	0	intron_retention	TRUE	canonical	1	1	junction_2	77.3601677580624	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGGAAGTGCTGGCTG	208	False	NA	25	True	AATAAA	-33	NA	28441356	28453296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_28441708_28443666_28443763_28443985_28444145_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
transcript_118571.known	chr7	+	1868	16	FSM	ENSMUSG00000070699.6	ENSMUST00000094632.6	1868	16	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_5	21.0516824347446	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGGAAGTGCTGGCTG	278	False	NA	25	True	AATAAA	-33	NA	28441426	28453296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28446976_28447256_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
transcript_118575.nic	chr7	+	2219	15	NIC	ENSMUSG00000070699.6	novel	1868	16	NA	NA	-60	0	intron_retention	FALSE	canonical	3	180	junction_5	20.6265382852444	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGGAAGTGCTGGCTG	208	False	NA	25	True	AATAAA	-33	NA	28441356	28453296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
transcript_118583.known	chr7	+	1790	2	FSM	ENSMUSG00000070699.6	ENSMUST00000207897.2	1790	2	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAG	284	False	NA	NA	False	NA	NA	NA	28441432	28445181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28441708_28443666
transcript_118584.known	chr7	+	1843	16	FSM	ENSMUSG00000015149.15	ENSMUST00000072965.5	1843	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	28.236776649532	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466191	28488085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28466293_28467056_28467104_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
transcript_118586.known	chr7	+	1828	15	FSM	ENSMUSG00000015149.15	ENSMUST00000122915.8	1828	15	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	14.0365775815931	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466159	28488085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
transcript_118588.known	chr7	-	1243	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTTCCTGCTTATTT	NA	False	NA	1	True	AATAAA	-33	NA	28465939	28458456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
transcript_118591.known	chr7	+	1585	13	FSM	ENSMUSG00000015149.15	ENSMUST00000170068.9	1585	13	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	28.6162347084463	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTGTGTGGCCTCTG	NA	False	NA	13	True	ATTAAA	-22	NA	28466240	28488086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28466293_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
transcript_118592.known	chr7	+	2871	12	FSM	ENSMUSG00000051735.8	ENSMUST00000059857.8	2871	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.4898684901539	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAGGTGCAGACCTGTA	NA	False	NA	12	True	AATAAA	-22	NA	28488393	28498388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28488431_28489750_28489837_28490015_28490176_28491661_28491765_28494246_28494320_28494402_28494468_28495082_28495230_28495315_28495772_28496077_28496372_28496534_28496667_28496984_28497149_28497234
transcript_118594.known	chr7	+	2898	12	FSM	ENSMUSG00000051735.8	ENSMUST00000209035.2	2898	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.4898684901539	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACGAGCAATGGAGGTGC	NA	False	NA	3	True	AATAAA	-13	NA	28488393	28498379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28488431_28489714_28489837_28490015_28490176_28491661_28491765_28494246_28494320_28494402_28494468_28495082_28495230_28495315_28495772_28496077_28496372_28496534_28496667_28496984_28497149_28497234
transcript_118596.known	chr7	+	2679	14	FSM	ENSMUSG00000015165.17	ENSMUST00000174548.8	2679	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1609.500823053	3786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGGTGGGTTGTCTGCTTT	NA	False	NA	33	True	AATAAA	-36	NA	28507965	28521691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28508285_28510096_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
transcript_118597.known	chr7	+	1898	13	FSM	ENSMUSG00000015165.17	ENSMUST00000172529.8	1898	13	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	1654.75498983653	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	16	True	AATAAA	-19	NA	28508232	28521674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28508285_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
transcript_118601.known	chr7	+	2180	12	FSM	ENSMUSG00000015165.17	ENSMUST00000174477.8	2180	12	0	0	0	0	multi-exon	FALSE	canonical	3	4757	junction_7	501.59715158615	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAACTATTTGCTGG	NA	False	NA	7	True	AATAAA	-10	NA	28510361	28521665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
transcript_118602.known	chr7	+	2426	6	FSM	ENSMUSG00000015165.17	ENSMUST00000174755.8	2426	6	0	0	0	0	multi-exon	FALSE	canonical	3	5544	junction_4	444.492249651217	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAATAAAAAATTAAACCA	NA	False	NA	NA	False	NA	NA	NA	28510364	28516361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704
transcript_118604.known	chr7	+	1267	10	FSM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	0	0	0	0	multi-exon	TRUE	canonical	3	645	junction_5	36.3137901908447	709	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	14	True	AATAAA	-12	NA	28524641	28531672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
transcript_118611.known	chr7	+	1384	10	FSM	ENSMUSG00000053964.18	ENSMUST00000066723.15	1384	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	2.77999911182151	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	28533278	28541133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28533652_28533872_28533962_28535251_28535457_28537040_28537182_28539686_28539720_28539838_28539878_28540005_28540036_28540288_28540378_28540569_28540733_28540911
transcript_118612.known	chr7	+	1298	8	FSM	ENSMUSG00000053964.18	ENSMUST00000208971.2	1298	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.98978286964827	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAAGGAGTCTTGTGTGTG	NA	False	NA	NA	False	AATAAA	-4	NA	28533278	28541119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28533652_28533872_28533962_28535251_28535457_28537040_28537182_28540005_28540036_28540288_28540378_28540569_28540733_28540911
transcript_118627.known	chr7	+	3040	21	FSM	ENSMUSG00000054083.9	ENSMUST00000066880.6	3040	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	1.10792599030802	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGTAAATAGTAATTC	NA	False	NA	NA	False	AATAAA	-11	NA	28580846	28592988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28581386_28581975_28582046_28582194_28582314_28582552_28582687_28585152_28585322_28585795_28585871_28585957_28586044_28586122_28586198_28586997_28587162_28587244_28587481_28587843_28587856_28588036_28588246_28588497_28588541_28588621_28588682_28589205_28589264_28589580_28589652_28589748_28589812_28590335_28590415_28592043_28592161_28592247_28592307_28592386
transcript_11864.nic	chr10	-	1685	4	NIC	ENSMUSG00000035278.10	novel	1261	5	NA	NA	-281	0	intron_retention	FALSE	canonical	3	953	junction_3	134.254319193917	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATGTCGGAATGAGT	NA	False	NA	-6	True	AATAAA	-14	NA	80634741	80631935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80632357_80632424_80632657_80633606_80633812_80633914
transcript_118643.nic	chr7	-	3627	21	NIC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	-155	0	combination_of_known_junctions	FALSE	canonical	3	395	junction_14	307.041247229098	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	AAAACA	-37	NA	28661920	28593077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28609327_28609414_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
transcript_118648.known	chr7	-	3877	21	FSM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	0	0	0	0	multi-exon	FALSE	canonical	3	997	junction_13	138.805763569097	2278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCATCTTCTCCC	NA	False	NA	-1	True	AATAAA	-24	NA	28661765	28592672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
transcript_118686.known	chr7	-	3530	22	FSM	ENSMUSG00000054808.16	ENSMUST00000217157.2	3530	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	415.436617026521	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAGGAAA	NA	False	NA	NA	False	AAAACA	-35	NA	28661765	28593079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28593813_28593925_28594085_28594545_28594606_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
transcript_118689.known	chr7	-	774	8	FSM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	370.651715060852	1608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGTCTCTTGCCTGTA	NA	False	NA	-4	True	AATAAA	-17	NA	28681239	28670796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
transcript_118690.known	chr7	-	647	7	FSM	ENSMUSG00000053565.11	ENSMUST00000207683.2	647	7	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	1263.25735259641	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681212	28670797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28681098
transcript_118695.known	chr7	-	1782	6	FSM	ENSMUSG00000053565.11	ENSMUST00000207762.2	1782	6	0	0	0	0	multi-exon	FALSE	canonical	3	3290	junction_2	212.6599162983	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCTACAGAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	28681208	28672341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
transcript_118698.nnic	chr7	+	2806	33	NNC	ENSMUSG00000037337.12	novel	2724	32	NA	NA	-184	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	32.0996829959036	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	NA	False	NA	23	True	AATAAA	-28	NA	28682068	28702704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_28682311_28682413_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_118699.known	chr7	+	2724	32	FSM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_17	22.4346431975332	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTCGGAGGAGAGATTTT	NA	False	NA	22	True	AATAAA	-27	NA	28682252	28702703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_118700.known	chr7	+	2764	32	FSM	ENSMUSG00000037337.12	ENSMUST00000207185.2	2764	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_25	32.387867874126	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	NA	False	NA	23	True	AATAAA	-28	NA	28682285	28702704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699520_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_118711.known	chr7	+	523	5	FSM	ENSMUSG00000037337.12	ENSMUST00000208784.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	9.82344135219425	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTCGGAGGAGAGA	6962	False	NA	18	True	AATAAA	-23	NA	28700966	28702699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_118714.known	chr7	+	2296	17	FSM	ENSMUSG00000030589.16	ENSMUST00000159975.8	2296	17	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	20.8408215708978	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTGCCAGTCACACTCC	188	False	NA	20	True	AAAAAG	-19	NA	28834357	28851046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28834521_28836965_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848572_28849223_28849261_28849346_28849482_28849603_28849717_28850870
transcript_118722.known	chr7	-	1189	7	FSM	ENSMUSG00000030590.16	ENSMUST00000134176.8	1189	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	138.986410206978	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855608	28851936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28852273_28852746_28852915_28853843_28853957_28854040_28854119_28854576_28854783_28855099_28855235_28855455
transcript_11873.known	chr10	-	496	2	FSM	ENSMUSG00000035278.10	ENSMUST00000217735.2	496	2	0	0	0	0	multi-exon	FALSE	canonical	3	953	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTGAGAGAGGTGCAGTC	NA	False	NA	NA	False	NA	NA	NA	80634028	80633429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80633812_80633914
transcript_118733.known	chr7	-	1293	8	FSM	ENSMUSG00000030590.16	ENSMUST00000164589.9	1293	8	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	23.9565934002925	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	False	NA	-1	True	AATAAA	-21	NA	28855659	28851934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
transcript_118734.known	chr7	-	1359	7	FSM	ENSMUSG00000030590.16	ENSMUST00000123545.8	1359	7	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	25.8698666405531	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855628	28851936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309
transcript_118735.known	chr7	-	2169	7	FSM	ENSMUSG00000030590.16	ENSMUST00000147561.8	2169	7	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	24.4386988196999	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855608	28851936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28852273_28852746_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
transcript_118736.known	chr7	-	1512	7	FSM	ENSMUSG00000030591.18	ENSMUST00000186182.2	1512	7	0	0	0	0	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28880098	28873612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
transcript_118748.known	chr7	-	1983	6	FSM	ENSMUSG00000030591.18	ENSMUST00000209034.2	1983	6	0	0	0	0	multi-exon	FALSE	canonical	3	1581	junction_4	157.590101211973	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28879906	28873612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
transcript_11875.known	chr10	-	772	3	FSM	ENSMUSG00000035278.10	ENSMUST00000218036.2	772	3	0	0	0	0	multi-exon	FALSE	canonical	3	1230	junction_2	7.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80633722	80631932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80632357_80632424_80632657_80633606
transcript_118754.nnic	chr7	-	1232	5	NNC	ENSMUSG00000030591.18	novel	1512	7	NA	NA	1	-69	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	807.111013120252	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACATGAAACTGACTTT	NA	False	NA	-9	True	ATTAAA	-13	NA	28880097	28873681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876623_28879701
transcript_118757.nnic	chr7	-	960	5	NNC	ENSMUSG00000030591.18	novel	1512	7	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	807.111013120252	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCCGAGTCTCCCCAGT	NA	False	NA	-12	True	AATAAA	-18	NA	28880097	28873953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876623_28879701
transcript_11876.known	chr10	+	744	6	FSM	ENSMUSG00000035242.16	ENSMUST00000179172.8	744	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	3507.00679212345	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGCCCTGCCCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	80662526	80664839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80662740_80664070_80664129_80664129_80664217_80664294_80664468_80664552_80664631_80664704
transcript_118762.known	chr7	+	1126	8	FSM	ENSMUSG00000030588.13	ENSMUST00000108238.8	1126	8	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_1	273.775194535329	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6037	False	NA	12	True	AATAAA	-15	NA	28937753	28946954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_118764.known	chr7	+	1111	8	FSM	ENSMUSG00000030588.13	ENSMUST00000032809.10	1111	8	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_1	365.371993833067	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6061	False	NA	12	True	AATAAA	-15	NA	28937777	28946954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_118766.nic	chr7	+	1194	8	NIC	ENSMUSG00000030588.13	novel	1111	8	NA	NA	35	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	515.665569523346	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6096	False	NA	12	True	AATAAA	-15	NA	28937812	28946954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_28937989_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_118767.known	chr7	+	1153	8	FSM	ENSMUSG00000030588.13	ENSMUST00000142519.3	1153	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	530.605237787328	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGCCTTCTTCTCCTT	6235	False	NA	28	True	NA	NA	NA	28937951	28947022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28938019_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_118784.known	chr7	+	1086	7	FSM	ENSMUSG00000030588.13	ENSMUST00000108237.2	1086	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	686.982471877316	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGGGGGGCCTTCTTCT	6160	False	NA	24	True	NA	NA	NA	28937876	28947018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
transcript_118787.known	chr7	-	1466	4	FSM	ENSMUSG00000030587.6	ENSMUST00000032808.6	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	7.36357401145817	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGGGCTCTTTTTTTTT	1783	False	NA	NA	False	AATAGA	-4	NA	28947891	28945985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28947160_28947321_28947391_28947552_28947666_28947781
transcript_118789.known	chr7	-	1304	7	FSM	ENSMUSG00000074227.13	ENSMUST00000207601.2	1304	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	472.77185007382	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTTGTTTTTGGT	467	False	NA	2	True	AATAAA	-39	NA	28981337	28955747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959481_28959555_28959795_28959856_28980936
transcript_118790.known	chr7	-	1384	7	FSM	ENSMUSG00000074227.13	ENSMUST00000098604.12	1384	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	452.801066204084	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	467	False	NA	-16	True	AATAAA	-21	NA	28981337	28955765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28963019_28963191_28980936
transcript_118792.known	chr7	-	1211	6	FSM	ENSMUSG00000074227.13	ENSMUST00000108236.5	1211	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	398.697679953119	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	469	False	NA	-16	True	AATAAA	-21	NA	28981335	28955765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
transcript_118799.known	chr7	+	950	4	FSM	ENSMUSG00000037166.6	ENSMUST00000048187.6	950	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	2.05480466765633	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGCACAATGGGTTTAG	4007	False	NA	NA	False	ATTAAA	-19	NA	28988736	28993226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_28988961_28990934_28991016_28991475_28991509_28992614
transcript_11880.nic	chr10	+	1025	6	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	3491.20233730444	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662508	80665119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_80662740_80664070_80664126_80664129_80664217_80664294_80664468_80664544_80664631_80664726
transcript_118800.known	chr7	+	2040	12	FSM	ENSMUSG00000030584.15	ENSMUST00000108231.8	2040	12	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	19.1570283587301	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	1764	False	NA	NA	False	NA	NA	NA	29003375	29016689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015638_29015751_29015905
transcript_118802.known	chr7	+	2309	12	FSM	ENSMUSG00000030584.15	ENSMUST00000049977.13	2309	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_7	12.1008161735527	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCCATCTCTAACCTC	1789	False	NA	10	True	ATTAAA	-26	NA	29003400	29017013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
transcript_118806.known	chr7	+	1574	12	FSM	ENSMUSG00000030584.15	ENSMUST00000065181.12	1574	12	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	16.304438375602	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAATATATACAAAGAG	5825	False	NA	NA	False	AAAAAG	-27	NA	29007436	29016328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29007524_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
transcript_11881.nic	chr10	+	1123	5	ISM	ENSMUSG00000035242.16	ENSMUST00000060987.15	1071	6	16	6	-10	0	intron_retention	TRUE	non_canonical	0	0	junction_2	3186.42134690314	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGCTGTGTCTTGTGTCC	NA	False	NA	13	True	AATAAA	-13	NA	80662505	80665118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_80662740_80664070_80664126_80664129_80664217_80664294_80664468_80664544
transcript_118811.nic	chr7	+	1654	11	NIC	ENSMUSG00000030584.15	novel	2309	12	NA	NA	-56	0	combination_of_known_junctions	TRUE	canonical	3	21	junction_7	17.2568826848884	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAATATATACAAAGAG	1708	False	NA	NA	False	AAAAAG	-27	NA	29003319	29016328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013707_29013828_29015048_29015162_29015668_29015751_29015905
transcript_118812.nic	chr7	+	2287	11	NIC	ENSMUSG00000030584.15	novel	2309	12	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	17.2568826848884	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCCATCTCTAACCTC	1760	False	NA	10	True	ATTAAA	-26	NA	29003371	29017013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013707_29013828_29015048_29015162_29015668_29015751_29015905
transcript_118831.known	chr7	+	1638	11	FSM	ENSMUSG00000030584.15	ENSMUST00000138993.8	1638	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	25.2079352585649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGGGAAAAAAATT	5825	False	NA	NA	False	AAAAAG	-12	NA	29007436	29016313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29007524_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012338_29012506_29012639_29013563_29013828_29015048_29015162_29015668_29015751_29015905
transcript_118835.known	chr7	+	4113	5	FSM	ENSMUSG00000046185.11	ENSMUST00000032802.5	4113	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	7.79021822544144	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATTAGGGAAAAAAGA	NA	False	NA	NA	False	AAGAAA	-21	NA	29467976	29479246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29468121_29470763_29470829_29474762_29474890_29475329_29475417_29475556
transcript_118839.known	chr7	+	3558	5	FSM	ENSMUSG00000047473.15	ENSMUST00000032803.12	3558	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	9.39414711402797	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGATGTTAAACATGAATT	NA	False	NA	NA	False	AATAAA	-16	NA	29483422	29494127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29484327_29485643_29485729_29487473_29487601_29488762_29488862_29491784
transcript_118844.known	chr7	+	3376	5	FSM	ENSMUSG00000011427.17	ENSMUST00000032796.14	3376	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	5.78791845139511	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTACACTTTTCACTGCTG	NA	False	NA	NA	False	GATAAA	-24	NA	29515543	29530365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29515715_29522404_29522570_29524254_29524379_29525116_29525213_29527545
transcript_118847.known	chr7	+	3356	5	FSM	ENSMUSG00000011427.17	ENSMUST00000178162.3	3356	5	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	16.6789538041209	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGAGTTAATTTCTTT	NA	False	NA	NA	False	AAGAAA	-18	NA	29515538	29530430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29515715_29522494_29522570_29524254_29524379_29525116_29525213_29527545
transcript_118854.nic	chr7	-	3014	5	NIC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	18.7082869338697	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3414	False	NA	-4	True	AATAAA	-21	NA	29553103	29543360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552701
transcript_118855.nnic	chr7	-	2865	5	NNC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	9.83298021964857	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3414	False	NA	-4	True	AATAAA	-21	NA	29553103	29543360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552850
transcript_118856.known	chr7	-	2764	5	FSM	ENSMUSG00000050855.17	ENSMUST00000085792.5	2764	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	10.6624340560681	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3444	False	NA	-4	True	AATAAA	-21	NA	29553073	29543360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552921
transcript_118859.known	chr7	-	3712	4	FSM	ENSMUSG00000050855.17	ENSMUST00000145098.2	3712	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	12.2836838484589	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATTGGTGTGTGTGTGT	3451	False	NA	NA	False	ATTAAA	-40	NA	29553066	29542674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29545674_29545893_29546386_29550366_29550443_29552921
transcript_118861.known	chr7	+	2537	4	FSM	ENSMUSG00000058402.15	ENSMUST00000074876.13	2537	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	4.02768199119819	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGCTGCTATTTTCATT	NA	False	NA	NA	False	CATAAA	-1	NA	29559403	29575930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29559519_29560440_29560494_29572316_29572359_29573603
transcript_118865.known	chr7	+	2744	3	FSM	ENSMUSG00000058402.15	ENSMUST00000057652.7	2744	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	17.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAATGTGTAGTTTTGTG	NA	False	NA	NA	False	GATAAA	-19	NA	29559465	29576252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29559519_29572316_29572359_29573603
transcript_118866.nnic	chr7	-	3443	5	NIC	ENSMUSG00000062040.15	novel	3150	5	NA	NA	-31	-105	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	18.1245689603919	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAAGTGTACCTGGCCT	NA	False	NA	NA	False	AGTAAA	-19	NA	29605560	29592862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605478
transcript_118867.known	chr7	-	3845	5	FSM	ENSMUSG00000062040.15	ENSMUST00000162592.8	3845	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	18.5522909636519	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATCATGTCTTTTGAAT	NA	False	NA	NA	False	AAAAAG	-21	NA	29605997	29592757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605634
transcript_11887.known	chr10	+	2526	2	FSM	ENSMUSG00000035242.16	ENSMUST00000179894.2	2526	2	0	0	0	0	multi-exon	FALSE	canonical	3	7170	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGCTGTGTCTTGTGTCC	NA	False	NA	13	True	AATAAA	-13	NA	80662515	80665118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80664468_80664544
transcript_118870.known	chr7	-	3150	5	FSM	ENSMUSG00000062040.15	ENSMUST00000053521.15	3150	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	19.4084388862165	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTTCTCTTCTGTCAC	NA	False	NA	0	True	AATATA	-16	NA	29605529	29593140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605478
transcript_118872.known	chr7	-	3381	5	FSM	ENSMUSG00000062040.15	ENSMUST00000159920.2	3381	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	18.9802528961023	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTTCTCTTCTGTCAC	NA	False	NA	0	True	AATATA	-16	NA	29605957	29593140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605675
transcript_118873.known	chr7	+	2614	5	FSM	ENSMUSG00000099689.7	ENSMUST00000186475.2	2614	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	3.53553390593274	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAGTTTCATAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	29607941	29616232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29608077_29609607_29609673_29611593_29611721_29612014_29612111_29614041
transcript_118874.known	chr7	+	3208	4	FSM	ENSMUSG00000099689.7	ENSMUST00000187028.7	3208	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	4.02768199119819	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCATAATTTTCTTTATG	NA	False	NA	33	True	AATAAA	-30	NA	29607647	29616238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29608077_29609607_29609673_29611593_29612111_29614041
transcript_118875.known	chr7	+	3428	1	FSM	ENSMUSG00000109105.2	ENSMUST00000208490.2	3428	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGTGGTCGCGTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	29626402	29629830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29626400_29629800
transcript_118880.nnic	chr7	-	3140	6	NNC	ENSMUSG00000059975.16	novel	3711	5	NA	NA	-39	609	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	15.0119952038362	71	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAACAAAAAACAGTTTT	NA	False	NA	NA	False	AATACA	-14	NA	29653553	29633057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642971_29651138_29651316_29653279
transcript_118882.nic	chr7	-	2877	5	ISM	ENSMUSG00000059975.16	ENSMUST00000108212.8	2060	7	-69	2818	-69	609	5prime_fragment	FALSE	canonical	2	4	junction_4	20.9568008054665	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAACAAAAAACAGTTTT	5309	False	NA	NA	False	AATACA	-14	NA	29643249	29633057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642966_29643056
transcript_118883.nnic	chr7	-	2883	5	NIC	ENSMUSG00000059975.16	novel	3711	5	NA	NA	-70	609	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	18.3626659284539	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAACAAAAAACAGTTTT	5308	False	NA	NA	False	AATACA	-14	NA	29643250	29633057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642971_29643056
transcript_118887.known	chr7	+	4005	10	FSM	ENSMUSG00000074221.13	ENSMUST00000148442.8	4005	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	68.6080296204101	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAATTTGTACACT	NA	False	NA	NA	False	NA	NA	NA	29683379	29724536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29683654_29684684_29684752_29687013_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29713264_29713315_29714490_29714615_29716591_29716688_29721642
transcript_118894.nic	chr7	+	1013	4	NIC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	0	243	combination_of_known_junctions	FALSE	canonical	3	234	junction_3	16.0485374896143	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGAATATTCATGTT	NA	False	NA	NA	False	AAGAAA	-15	NA	29683379	29688920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473
transcript_118898.known	chr7	-	2374	9	FSM	ENSMUSG00000058447.9	ENSMUST00000182746.2	2374	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	43.1955943934101	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	9890	False	NA	NA	False	ATTAAA	-18	NA	29789835	29755458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29780515_29780643_29786524_29786585_29789712
transcript_11890.known	chr10	-	271	2	FSM	ENSMUSG00000051067.9	ENSMUST00000219924.2	271	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGGCCTGTGGGCGCC	NA	False	NA	NA	False	NA	NA	NA	80679632	80671824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80671976_80679512
transcript_118900.nnic	chr7	-	2369	8	NIC	ENSMUSG00000058447.9	novel	2374	9	NA	NA	-106	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	44.1093261460796	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	9934	False	NA	NA	False	ATTAAA	-18	NA	29789941	29755458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29780515_29780643_29786524_29786585_29789712
transcript_118901.known	chr7	-	2181	7	FSM	ENSMUSG00000098022.8	ENSMUST00000080834.15	2181	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	14.682756326158	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGTTCCACTGTGTCC	NA	False	NA	NA	False	ATTAAA	-15	NA	29772325	29755461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29772205
transcript_118903.nnic	chr7	-	2076	6	NIC	ENSMUSG00000098022.8	novel	2181	7	NA	NA	-3	2	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	15.0332963783729	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	NA	False	NA	NA	False	ATTAAA	-18	NA	29772328	29755458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29772205
transcript_118904.known	chr7	-	1709	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9923	False	NA	2	True	AAAACA	-22	NA	29789952	29776761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
transcript_118906.known	chr7	+	3604	3	FSM	ENSMUSG00000049421.14	ENSMUST00000108200.2	3604	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	44	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGATCCTTTGTTGTT	NA	False	NA	5	True	NA	NA	NA	29794609	29807039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29794637_29798952_29799148_29803657
transcript_118909.nnic	chr7	+	3607	3	NNC	ENSMUSG00000049421.14	novel	4006	3	NA	NA	-17	0	intron_retention	FALSE	canonical	2	2	junction_1	67.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTGTTGTTTTCCTTTT	NA	False	NA	13	True	NA	NA	NA	29794569	29807047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_29794637_29799000_29799148_29803654
transcript_11891.known	chr10	-	3439	2	FSM	ENSMUSG00000051067.9	ENSMUST00000053986.9	3439	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGACGTTTAGATATTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	80679873	80668634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80671976_80679775
transcript_118913.nnic	chr7	+	2058	6	NNC	ENSMUSG00000074220.11	novel	2117	5	NA	NA	-44	5229	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	17.1883681598923	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTCAATGGAAAAAACAATA	5215	False	NA	NA	False	NA	NA	NA	29821322	29839604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_29821502_29825192_29825267_29830125_29830253_29830956_29831050_29832687_29834168_29839499
transcript_118914.nnic	chr7	+	2625	6	NNC	ENSMUSG00000074220.11	novel	2117	5	NA	NA	-44	5796	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	17.1883681598923	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTTTTCTAAGACAAACT	5215	False	NA	16	True	AATAAA	-13	NA	29821322	29840171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_29821502_29825192_29825267_29830125_29830253_29830956_29831050_29832687_29834168_29839499
transcript_118922.known	chr7	+	2117	5	FSM	ENSMUSG00000074220.11	ENSMUST00000098596.11	2117	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	7.82224392358101	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTGAAAATGAAGGCTT	5259	False	NA	NA	False	NA	NA	NA	29821366	29834375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29821502_29825192_29825267_29830125_29830253_29830956_29831050_29832687
transcript_11893.known	chr10	-	609	4	FSM	ENSMUSG00000035215.10	ENSMUST00000218119.2	609	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_3	2094.66343093321	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTCCCTCCCTTCCTGCT	NA	False	NA	-23	True	AATAAA	-15	NA	80691027	80688668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80690847
transcript_118931.known	chr7	-	2029	2	FSM	ENSMUSG00000037029.9	ENSMUST00000062181.9	2029	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGCAGAAATAAAGAAATGC	NA	False	NA	NA	False	AGTAAA	-25	NA	29869152	29860693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29862654_29869083
transcript_118932.nic	chr7	-	2967	2	NIC	ENSMUSG00000037029.9	novel	585	3	NA	NA	8	778	intron_retention	FALSE	canonical	3	14	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCTTAAATCCTTCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	29869167	29859915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_29862799_29869083
transcript_118934.known	chr7	-	1263	1	FSM	ENSMUSG00000037029.9	ENSMUST00000208923.2	1263	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29869175	29867912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29867900_29869200
transcript_118939.nnic	chr7	+	2009	4	NNC	ENSMUSG00000066647.9	novel	5117	3	NA	NA	-1	33375	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	13.29995822884	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTCAACACTACAGGCCA	9188	False	NA	NA	False	NA	NA	NA	29869298	29915124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_29869640_29875275_29875372_29877068_29878449_29914932
transcript_11894.known	chr10	-	468	4	FSM	ENSMUSG00000035215.10	ENSMUST00000035775.9	468	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_3	751.769616009822	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTGCTCTGTAACTTT	NA	False	NA	-13	True	AATAAA	-25	NA	80691043	80688658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80691014
transcript_118940.known	chr7	+	5117	3	FSM	ENSMUSG00000066647.9	ENSMUST00000209028.2	5117	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCACGCGTGTG	9189	False	NA	NA	False	NA	NA	NA	29869299	29881749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29869640_29875275_29875372_29877068
transcript_118941.known	chr7	+	393	4	FSM	ENSMUSG00000074218.4	ENSMUST00000098594.4	393	4	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	139.802241279125	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	5674	False	NA	24	True	AATAAA	-25	NA	29883568	29885455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29883671_29884509_29884597_29884699_29884785_29885336
transcript_118942.known	chr7	+	485	4	FSM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	502.814964861716	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGTCTACGCAGTGGA	5724	False	NA	72	True	NA	NA	NA	29883618	29885503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29883765_29884509_29884597_29884699_29884785_29885336
transcript_118944.known	chr7	-	1600	12	FSM	ENSMUSG00000001794.14	ENSMUST00000001845.13	1600	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	486.143841584714	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	8309	False	NA	-8	True	NA	NA	NA	29898236	29886366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430_29894590_29898182
transcript_118945.known	chr7	-	1192	10	FSM	ENSMUSG00000001794.14	ENSMUST00000108196.8	1192	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_9	490.288577155219	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892531	29886414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892454
transcript_118947.known	chr7	-	1157	10	FSM	ENSMUSG00000001794.14	ENSMUST00000129761.8	1157	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	497.427331996628	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCTCACTATGGAGCCA	NA	False	NA	NA	False	NA	NA	NA	29893206	29886907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892671
transcript_11895.known	chr10	-	1129	3	FSM	ENSMUSG00000035215.10	ENSMUST00000220225.2	1129	3	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_2	840	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTCTGTAACTTTGATC	NA	False	NA	-9	True	AATAAA	-29	NA	80691043	80688654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80689664_80690451_80690543_80691014
transcript_118951.known	chr7	-	1241	9	FSM	ENSMUSG00000001794.14	ENSMUST00000207082.2	1241	9	0	0	0	0	multi-exon	FALSE	canonical	3	1474	junction_7	82.1492544092763	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTATTTTTTTAAT	NA	False	NA	-2	True	NA	NA	NA	29892397	29886360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291
transcript_118952.known	chr7	-	1429	11	FSM	ENSMUSG00000001794.14	ENSMUST00000126116.3	1429	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_10	279.009032111866	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGTAACTTGGTTATTT	NA	False	NA	-9	True	NA	NA	NA	29894473	29886367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
transcript_118956.known	chr7	+	488	6	FSM	ENSMUSG00000019738.16	ENSMUST00000108193.2	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	479.289724488226	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTAGTGTTTCCCGTGTTT	NA	False	NA	13	True	AATAAA	-13	NA	29931756	29932810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29931830_29931906_29931962_29932116_29932249_29932331_29932407_29932491_29932544_29932709
transcript_118957.known	chr7	+	819	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_5	44.9239357136037	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCCCGTGTTTATTTC	NA	False	NA	18	True	AATAAA	-18	NA	29931372	29932815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
transcript_11896.known	chr10	-	646	3	FSM	ENSMUSG00000035215.10	ENSMUST00000217781.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	4365	junction_1	93.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGATCTTCCTTCTATGGG	NA	False	NA	NA	False	NA	NA	NA	80690857	80688766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80688935_80689591_80689664_80690451
transcript_118961.known	chr7	-	1416	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_4	26.4529771481397	1566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAAGTCTCTTGATTCC	NA	False	NA	-5	True	NA	NA	NA	29931697	29923555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
transcript_118963.known	chr7	+	435	5	FSM	ENSMUSG00000019738.16	ENSMUST00000138118.8	435	5	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_4	46.6717259162333	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCACCGCTGGACTGAGT	NA	False	NA	-47	True	NA	NA	NA	29931774	29932750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29931830_29931906_29931962_29932174_29932407_29932491_29932544_29932709
transcript_118967.known	chr7	-	502	3	FSM	ENSMUSG00000006095.13	ENSMUST00000141608.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	871	junction_1	18	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	-11	True	NA	NA	NA	29926486	29923561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29923773_29923897_29923971_29926268
transcript_118968.known	chr7	+	508	5	FSM	ENSMUSG00000019738.16	ENSMUST00000108192.2	508	5	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_4	46.0672063403024	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGTTTCCCGTGTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29931756	29932811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
transcript_118969.known	chr7	+	451	4	FSM	ENSMUSG00000019738.16	ENSMUST00000150841.2	451	4	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_3	51.8609251320834	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29932027	29932812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29932249_29932331_29932407_29932491_29932544_29932709
transcript_11897.known	chr10	-	785	2	FSM	ENSMUSG00000035215.10	ENSMUST00000218931.2	785	2	0	0	0	0	multi-exon	FALSE	canonical	3	4552	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCACTCTCCTCAGGTA	NA	False	NA	NA	False	NA	NA	NA	80691027	80689454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80689664_80690451
transcript_118973.known	chr7	-	4742	33	FSM	ENSMUSG00000037020.17	ENSMUST00000108190.8	4742	33	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_7	40.394139716517	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	-4	True	AATAAA	-21	NA	29979844	29939562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942458_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
transcript_11898.known	chr10	+	2869	15	FSM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	7.35298079221021	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCTCCTGTCCTGTGAG	NA	False	NA	11	True	ATTAAA	-19	NA	80691108	80704542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702495_80703233
transcript_118982.nic	chr7	-	4805	33	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	1	41	junction_22	36.4423774608628	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	-4	True	AATAAA	-21	NA	29979859	29939562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_29939910_29940002_29940140_29940655_29941310_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
transcript_118987.nic	chr7	-	4682	32	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	1	24	junction_10	39.0660477577263	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	-4	True	AATAAA	-21	NA	29979859	29939562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
transcript_11899.nnic	chr10	+	2893	15	NNC	ENSMUSG00000035206.11	novel	2869	15	NA	NA	20	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_14	10.1431086487933	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACAGTGGCCTCCTGTCCT	NA	False	NA	6	True	ATTAAA	-14	NA	80691134	80704537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702550_80703233
transcript_119.known	SIRV4	-	570	5	FSM	SIRV4A	SIRV408	570	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2658.88059152719	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTGATATTTAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	15122	8323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4_-_8373_8629_8748_8846_8991_13672_13829_15019
transcript_119007.nic	chr7	-	2632	13	ISM	ENSMUSG00000037020.17	ENSMUST00000108190.8	4742	33	-15	14905	-15	-5221	5prime_fragment	FALSE	canonical	1	41	junction_2	40.4621736934634	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGGTGGAAGAGGCAGAC	NA	False	NA	NA	False	AATGAA	-43	NA	29979859	29954467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
transcript_11901.nic	chr10	+	3637	14	ISM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	-33	4	-33	0	intron_retention	FALSE	canonical	3	19	junction_5	6.4925993372336	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGTGGCCTCCTGTCCTG	NA	False	NA	7	True	ATTAAA	-15	NA	80691075	80704538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333
transcript_119012.known	chr7	+	1340	1	FSM	ENSMUSG00000013928.14	ENSMUST00000208866.2	1340	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	29979980	29981320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_29980000_29981300
transcript_119013.known	chr7	-	4768	33	FSM	ENSMUSG00000037020.17	ENSMUST00000145027.8	4768	33	0	0	0	0	multi-exon	TRUE	canonical	1	5	junction_7	40.8660994705575	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	-4	True	AATAAA	-21	NA	29979821	29939562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942361_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
transcript_119016.nic	chr7	+	1087	7	NIC	ENSMUSG00000042831.14	novel	1112	6	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	165.266451526013	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008120	30013728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30011930_30012133_30013343
transcript_119018.known	chr7	+	982	7	FSM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_5	88.8144132446981	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008141	30013729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
transcript_11902.nic	chr10	+	4087	14	ISM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	36	-515	-21	515	intron_retention	FALSE	canonical	3	19	junction_5	6.4925993372336	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGCAAAACAAAGCAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	80691144	80705057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333
transcript_119020.nic	chr7	+	1331	7	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	-21	0	intron_retention	FALSE	canonical	3	9	junction_5	204.263446449813	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008120	30013729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30012897_30013024_30013343
transcript_119021.known	chr7	+	730	7	FSM	ENSMUSG00000042831.14	ENSMUST00000136887.8	730	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	178.123942491988	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCGCCAGCCTCCTGCTGA	NA	False	NA	NA	False	NA	NA	NA	30008201	30013579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30008260_30008905_30008985_30009452_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
transcript_119026.known	chr7	+	1112	6	FSM	ENSMUSG00000042831.14	ENSMUST00000132193.8	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_1	28.3125413906982	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008212	30013728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30013343
transcript_119034.known	chr7	+	427	4	FSM	ENSMUSG00000042831.14	ENSMUST00000139121.8	427	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	198.031983948721	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGCTTGTG	NA	False	NA	NA	False	AATAAA	-39	NA	30008237	30010475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30010218
transcript_119037.known	chr7	+	1355	8	FSM	ENSMUSG00000019737.15	ENSMUST00000054594.15	1355	8	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	40.5593543401494	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014240	30018471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
transcript_119038.nic	chr7	+	1413	8	NIC	ENSMUSG00000019737.15	novel	1355	8	NA	NA	-1	0	combination_of_known_junctions	TRUE	canonical	2	5	junction_5	74.7905920090303	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCTGAGAATATCAGTA	NA	False	NA	9	True	ATTAAA	-16	NA	30014230	30018469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30016567_30017392_30017468_30018097_30018157_30018248
transcript_119039.nic	chr7	+	1298	8	NIC	ENSMUSG00000019737.15	novel	1355	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	69.7438461918516	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCTGAGAATATCAGTA	NA	False	NA	9	True	ATTAAA	-16	NA	30014230	30018469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_30014512_30014686_30014826_30015719_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
transcript_119041.known	chr7	+	1006	7	FSM	ENSMUSG00000019737.15	ENSMUST00000176304.8	1006	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	73.2385751423994	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014340	30018471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30017392_30017468_30018097_30018157_30018248
transcript_119044.nic	chr7	+	2314	6	NIC	ENSMUSG00000019737.15	novel	1006	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	156	junction_2	32.932658562588	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCTGAGAATATCAGTA	NA	False	NA	9	True	ATTAAA	-16	NA	30014230	30018469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30017468_30018097_30018157_30018248
transcript_119047.known	chr7	-	2886	3	FSM	ENSMUSG00000036957.9	ENSMUST00000046351.7	2886	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	2	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGGGCTGTTCCTTTGCC	NA	False	NA	NA	False	AAGAAA	-16	NA	30062197	30054913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30055529_30058808_30060240_30061357
transcript_119048.known	chr7	+	2014	12	FSM	ENSMUSG00000036931.16	ENSMUST00000108176.9	2014	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	5.20965410250706	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTGTGGTGTCATTAAA	NA	False	NA	16	True	ATTAAA	-16	NA	30121156	30128171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30121260_30122827_30122929_30123059_30123121_30123664_30123877_30124646_30124835_30124926_30125033_30125133_30125281_30125394_30125447_30125540_30125690_30126492_30126610_30126850_30127016_30127558
transcript_119055.known	chr7	-	2343	17	FSM	ENSMUSG00000006651.9	ENSMUST00000006828.9	2343	17	0	0	0	0	multi-exon	TRUE	canonical	3	317	junction_16	59.4064390449386	569	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30144960	30134406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211_30136320_30137602_30137703_30139359_30139489_30139568_30139728_30140479_30140555_30141066_30141198_30141594_30141786_30141904_30142039_30142222_30142336_30142516_30142650_30143742_30143887_30144746
transcript_119078.nic	chr7	+	2903	19	ISM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	5545	0	5545	0	3prime_fragment	FALSE	canonical	2	33	junction_1	11.515555769973	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTAAAAAATTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	30164694	30186648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
transcript_119082.known	chr7	-	397	1	FSM	ENSMUSG00000109509.2	ENSMUST00000208689.2	397	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTTTGGCTGATTTTT	9635	False	NA	-41	True	AAGAAA	-4	NA	30184522	30184125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30184100_30184500
transcript_119083.known	chr7	-	4337	21	FSM	ENSMUSG00000036882.8	ENSMUST00000207858.2	4337	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	2.5588083163848	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTGGAGCTAGTGAATG	9032	False	NA	NA	False	AATAAA	-16	NA	30234485	30221650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30223272_30223368_30224014_30225379_30225455_30225538_30225685_30225771_30225926_30226566_30226713_30227704_30227813_30227894_30227978_30228078_30228224_30229140_30229244_30229319_30229473_30229560_30229621_30229700_30229768_30229849_30229928_30230010_30230134_30230948_30231042_30231503_30231642_30231744_30231826_30232184_30232270_30232359_30232458_30234350
transcript_119085.known	chr7	-	2465	12	FSM	ENSMUSG00000036864.17	ENSMUST00000215288.2	2465	12	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_11	10.5595517059866	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTCCAGTTTACTGTT	NA	False	NA	-6	True	AATAAA	-16	NA	30251692	30238558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30250182_30250260_30251632
transcript_119086.nic	chr7	-	2497	11	NIC	ENSMUSG00000036864.17	novel	2465	12	NA	NA	-77	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	7.82304288624318	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTCCAGTTTACTGTT	NA	False	NA	-6	True	AATAAA	-16	NA	30251801	30238558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30251632
transcript_119089.known	chr7	-	998	9	FSM	ENSMUSG00000036845.13	ENSMUST00000043975.11	998	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	22.8363744933385	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCTCAAGTGCATTTA	4885	False	NA	-6	True	NA	NA	NA	30259071	30254865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
transcript_119090.known	chr7	-	1312	9	FSM	ENSMUSG00000036845.13	ENSMUST00000108164.8	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	74.6976196073208	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGACAAATCTCAAGTGCA	4693	False	NA	-10	True	NA	NA	NA	30259263	30254869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257510_30258866
transcript_119103.known	chr7	+	1363	3	FSM	ENSMUSG00000036854.15	ENSMUST00000044048.8	1363	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	10.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTTATGTCTGGGCCAG	NA	False	NA	12	True	AATAAA	-20	NA	30252692	30254868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30252958_30253686_30253810_30253893
transcript_119104.known	chr7	+	1298	3	FSM	ENSMUSG00000036854.15	ENSMUST00000123355.8	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	8.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTGCCTTATGTCTGGG	NA	False	NA	8	True	AATAAA	-16	NA	30251948	30254864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30252153_30253686_30253810_30253893
transcript_119108.known	chr7	+	3007	10	FSM	ENSMUSG00000109378.2	ENSMUST00000167042.8	3007	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	228.074549215821	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATCTGCCTGTCCTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	30262768	30267383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519_30265807_30266173_30266926_30267005
transcript_119113.nic	chr7	+	853	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	193.245851659676	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGGTTTCCTTCCAC	NA	False	NA	35	True	AATAAA	-23	NA	30262725	30264789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_119114.known	chr7	+	583	8	FSM	ENSMUSG00000078765.12	ENSMUST00000163330.3	583	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	197.894529732277	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCGAGAAAGGAACCGACG	NA	False	NA	NA	False	NA	NA	NA	30262731	30264550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30262775_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_119116.known	chr7	+	860	8	FSM	ENSMUSG00000078765.12	ENSMUST00000167361.8	860	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	185.966751472034	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	False	NA	32	True	AATAAA	-20	NA	30262774	30264786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_119118.nic	chr7	+	864	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_1	181.681713163321	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGGTTTCCTTCCAC	NA	False	NA	35	True	AATAAA	-23	NA	30262739	30264789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_119121.known	chr7	+	781	7	FSM	ENSMUSG00000078765.12	ENSMUST00000163654.8	781	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	203.636454387606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTCTGTGGTTTCCTTCC	NA	False	NA	33	True	AATAAA	-21	NA	30262749	30264787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
transcript_119122.nic	chr7	+	1064	7	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	5	0	intron_retention	FALSE	canonical	3	411	junction_1	82.4386977631797	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGGTTTCCTTCCAC	NA	False	NA	35	True	AATAAA	-23	NA	30262736	30264789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30264033_30264127_30264224_30264519
transcript_119131.known	chr7	+	629	4	FSM	ENSMUSG00000078765.12	ENSMUST00000169071.8	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_1	109.985857676744	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAGCGGAACTCAATAAC	NA	False	NA	NA	False	NA	NA	NA	30262770	30263926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506
transcript_119134.known	chr7	-	708	4	FSM	ENSMUSG00000036835.8	ENSMUST00000043898.8	708	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	125.517595048131	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	1290	False	NA	-5	True	AATAAA	-17	NA	30262666	30261289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262476
transcript_119135.known	chr7	-	488	4	FSM	ENSMUSG00000036835.8	ENSMUST00000208628.2	488	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	378.867611002401	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGGGCACTCCCTAAC	904	False	NA	NA	False	NA	NA	NA	30263052	30261438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262933
transcript_119139.known	chr7	-	1775	6	FSM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	31.6771210813104	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30292367	30289105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30292336
transcript_119140.nnic	chr7	-	1896	6	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	21.6277599394852	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298356	30289105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30298204
transcript_119143.nnic	chr7	-	1658	6	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	30.1038203555628	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298356	30289105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290719_30291391_30298204
transcript_119145.nic	chr7	-	987	5	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_4	27.8960122598195	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298356	30289105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30298204
transcript_119146.nnic	chr7	-	2083	5	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-22	0	intron_retention	FALSE	canonical	3	42	junction_4	17.5267652463311	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298356	30289105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30291391_30298204
transcript_11916.known	chr10	-	1225	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	0	0	0	0	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCCCATCGGACTCCCA	5448	False	NA	NA	False	AATATA	-13	NA	80736803	80735283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80736094_80736315_80736385_80736457
transcript_119161.known	chr7	-	618	4	FSM	ENSMUSG00000036751.8	ENSMUST00000075738.6	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	5624	junction_1	329.368419183679	1567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTATTGTGTGTGTG	NA	False	NA	NA	False	AATGAA	-20	NA	30325576	30316285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30316588_30322839_30322941_30323924_30324039_30325475
transcript_119162.known	chr7	-	354	3	FSM	ENSMUSG00000036751.8	ENSMUST00000208838.2	354	3	0	0	0	0	multi-exon	FALSE	canonical	1	31	junction_2	2796.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	-4	True	AATAAA	-18	NA	30325539	30316398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30316588_30322839_30322941_30325475
transcript_119163.known	chr7	-	1048	6	FSM	ENSMUSG00000006311.9	ENSMUST00000108147.3	1048	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	22.0544780033444	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCGAACCTGCGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	30335277	30333040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30333260_30333413_30333527_30334037_30334515_30334732_30334793_30334999_30335087_30335185
transcript_119165.known	chr7	-	1526	9	FSM	ENSMUSG00000036733.17	ENSMUST00000108141.2	1526	9	0	0	0	0	multi-exon	TRUE	canonical	3	345	junction_5	209.790818435889	388	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACTGGACTTAGAAACT	3784	False	NA	-12	True	AATAAA	-18	NA	30349569	30340423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345247_30346984_30347060_30347155_30347241_30349008_30349145_30349362
transcript_119166.known	chr7	-	2187	19	FSM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_13	34.9573373142001	933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCACTGCCCAGTTTT	NA	False	NA	-9	True	AATAAA	-10	NA	30364419	30353140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
transcript_119167.known	chr7	-	2070	19	FSM	ENSMUSG00000078762.11	ENSMUST00000132862.8	2070	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	57.7150567683839	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGCCCAGTTTTATCAA	NA	False	NA	-4	True	AATAAA	-15	NA	30364358	30353135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30353481_30353594_30353728_30356373_30356443_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
transcript_119168.known	chr7	-	699	2	FSM	ENSMUSG00000049761.7	ENSMUST00000051495.7	699	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTGTGTCTGGGTGTA	NA	False	NA	NA	False	AATAAA	-21	NA	30371030	30370146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30370606_30370790
transcript_119169.known	chr7	-	870	7	FSM	ENSMUSG00000006315.10	ENSMUST00000006478.10	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_6	21.1850314032233	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTGTTATGTCCATCT	9257	False	NA	-16	True	AGTAAA	-14	NA	30428965	30427129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
transcript_11917.known	chr10	-	542	3	FSM	ENSMUSG00000020219.8	ENSMUST00000219896.2	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_2	1726.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCACCTCACTGCTTCA	5632	False	NA	-7	True	AATAAA	-25	NA	80736619	80735737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80736094_80736315_80736385_80736502
transcript_119170.known	chr7	-	835	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207263.2	835	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	291.92945304569	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCAGTGAAGTAAACAGT	9288	False	NA	-45	True	NA	NA	NA	30428934	30427158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428167_30428626_30428697_30428768
transcript_119171.known	chr7	-	774	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207779.2	774	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	293.234831946457	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9290	False	NA	-12	True	AGTAAA	-18	NA	30428932	30427125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427923_30427994_30428081_30428142_30428626_30428697_30428768
transcript_119172.known	chr7	-	875	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207296.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	290.731118618791	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATGTCCATCTCT	9275	False	NA	-14	True	AGTAAA	-16	NA	30428947	30427127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30427329_30427411_30427555_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
transcript_119178.known	chr7	-	727	6	FSM	ENSMUSG00000006315.10	ENSMUST00000209065.2	727	6	0	0	0	0	multi-exon	FALSE	canonical	3	791	junction_1	3.48711915483254	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	-11	True	NA	-12	True	AGTAAA	-18	NA	30428746	30427125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626
transcript_11918.known	chr10	-	471	3	FSM	ENSMUSG00000020219.8	ENSMUST00000218481.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	1786	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGCCGCCCTGAAGTCT	5633	False	NA	NA	False	NA	NA	NA	80736618	80735925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80736167_80736315_80736385_80736457
transcript_119181.nic	chr7	+	1120	7	Fusion	ENSMUSG00000046056.16_ENSMUSG00000097320.9	novel	1276	6	NA	NA	0	0	multi-exon	FALSE	canonical	1	1	junction_4	6.02771377334171	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCGTGGCTCACTGTGCT	526	False	NA	19	True	AATAAA	-21	NA	30429003	30455556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_+_30429280_30431838_30432187_30434128_30434194_30435240_30435388_30454233_30454306_30454426_30454472_30455389
transcript_119182.known	chr7	+	2221	4	FSM	ENSMUSG00000046056.16	ENSMUST00000080518.14	2221	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.87400787401181	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCGTGGCTCACTGTGCT	8736	False	NA	19	True	AATAAA	-21	NA	30450957	30455556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30452895_30454233_30454306_30454426_30454472_30455389
transcript_119183.known	chr7	+	470	6	FSM	ENSMUSG00000074199.8	ENSMUST00000098559.3	470	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	10.9105453575887	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTTTCTGTCCTTATC	NA	False	NA	23	True	AATAAA	-28	NA	30487329	30490522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490344
transcript_119184.known	chr7	+	403	6	FSM	ENSMUSG00000074199.8	ENSMUST00000190990.7	403	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	24.1694021440333	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCCTGAATCTGTG	NA	False	NA	9	True	AATAAA	-14	NA	30487329	30490508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490397
transcript_119187.known	chr7	+	420	5	FSM	ENSMUSG00000074199.8	ENSMUST00000187493.7	420	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	32.322592717788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGAATCTGTGTTTCTG	NA	False	NA	15	True	AATAAA	-20	NA	30487329	30490514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30487448_30488929_30488969_30489336_30489382_30489992_30490041_30490344
transcript_119188.known	chr7	+	345	5	FSM	ENSMUSG00000074199.8	ENSMUST00000189673.7	345	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	35.6370593624109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGTTTTCCACTCAAGT	NA	False	NA	-7	True	NA	NA	NA	30487329	30490492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30487448_30488929_30488969_30489336_30489382_30489992_30490041_30490397
transcript_119193.known	chr7	-	1625	2	FSM	ENSMUSG00000019429.8	ENSMUST00000094583.2	1625	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAAATAATGTTTC	7666	False	NA	NA	False	AATAAA	-13	NA	30555603	30553754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30555330_30555553
transcript_119196.known	chr7	-	2434	13	FSM	ENSMUSG00000036634.16	ENSMUST00000187137.7	2434	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.22984802670994	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTAGACCCATTCTTTGG	6647	False	NA	NA	False	AATAAA	-20	NA	30614257	30598600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30599124_30599776_30599822_30600062_30600163_30600487_30600585_30601073_30601362_30606330_30606592_30607789_30608048_30608400_30608698_30610825_30611195_30611315_30611389_30612248_30612305_30613693_30613747_30614243
transcript_119197.nic	chr7	-	2807	12	NIC	ENSMUSG00000036634.16	novel	2419	12	NA	NA	-392	0	intron_retention	FALSE	canonical	0	0	junction_2	2.15130173930895	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAGTCTAGACCCAT	9862	False	NA	NA	False	AATAAA	-13	NA	30614690	30598607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_30599124_30599776_30599822_30600062_30600163_30600487_30600585_30601073_30601362_30606330_30606592_30607789_30608048_30608400_30608698_30610825_30611195_30611315_30611389_30612248_30612305_30614243
transcript_119207.known	chr7	-	2419	10	FSM	ENSMUSG00000058239.14	ENSMUST00000058860.14	2419	10	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_9	26.650458036969	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCTTTGGCCTTACCA	8764	False	NA	NA	False	NA	NA	NA	30656228	30644672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30655806_30655854_30656120
transcript_119211.known	chr7	-	2021	10	FSM	ENSMUSG00000001247.17	ENSMUST00000205961.2	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	47.1029867208513	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATCTAAGCCTCTTGTTT	NA	False	NA	-7	True	AATAAA	-13	NA	30672747	30657203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
transcript_119214.known	chr7	-	994	9	FSM	ENSMUSG00000058239.14	ENSMUST00000171338.8	994	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	43.3688756483264	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGCCGGCTCACCCTTC	8810	False	NA	NA	False	NA	NA	NA	30656182	30646004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30656120
transcript_119215.known	chr7	-	849	9	FSM	ENSMUSG00000058239.14	ENSMUST00000108119.10	849	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	40.847085269331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGCCGGCTCACCCTTC	8801	False	NA	NA	False	NA	NA	NA	30656191	30646004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655573_30655693_30655806_30655854_30656120
transcript_119219.known	chr7	-	2071	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	34.291945118351	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAAGCCTCTTGTTTTG	NA	False	NA	-5	True	AATAAA	-15	NA	30672852	30657201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
transcript_119224.known	chr7	-	1930	8	FSM	ENSMUSG00000001247.17	ENSMUST00000098553.11	1930	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	67.6955971799571	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGTTTTGCTGCACG	NA	False	NA	2	True	AATAAA	-22	NA	30672851	30657194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30665393_30665514_30671292_30671638_30672504
transcript_119230.known	chr7	+	1213	2	FSM	ENSMUSG00000046826.8	ENSMUST00000129773.2	1213	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAACTGGTTTGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	30673228	30689145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_30673701_30688404
transcript_119232.known	chr7	-	1172	9	FSM	ENSMUSG00000009687.15	ENSMUST00000161684.8	1172	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	43.0718875834343	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGTCTTCTGTGAATT	2317	False	NA	-3	True	GATAAA	-23	NA	30741906	30732150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821_30740883_30741514
transcript_119233.nnic	chr7	-	534	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	852	0	intron_retention	FALSE	canonical	3	42	junction_4	22.1923410211721	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGCCTCTGTCTTCTGTG	7712	False	NA	-7	True	GATAAA	-19	NA	30736511	30732154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736452
transcript_119234.known	chr7	-	469	6	FSM	ENSMUSG00000057092.13	ENSMUST00000169313.8	469	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.489897948556636	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGTGCCAGAGACTCTG	NA	False	NA	NA	False	TATAAA	-17	NA	30771714	30769959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30770146_30770276_30770315_30770586_30770624_30770716_30770792_30771499_30771524_30771605
transcript_119235.known	chr7	-	1830	14	FSM	ENSMUSG00000001249.15	ENSMUST00000108102.9	1830	14	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_11	2.8658363092611	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGCGTCTACAAACGGA	9112	False	NA	NA	False	AATAAA	-20	NA	30814715	30798149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902_30802094_30802185_30802352_30802578_30802620_30802725_30802849_30802924_30803055_30808389_30808432_30808515_30808618_30810138_30810199_30814102_30814170_30814560
transcript_119236.known	chr7	-	1762	13	FSM	ENSMUSG00000001249.15	ENSMUST00000168884.8	1762	13	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_11	3.2945662334618	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGCGTCTACAAACGGA	9120	False	NA	NA	False	AATAAA	-20	NA	30814707	30798149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902_30802094_30802185_30802352_30802578_30802620_30802725_30802849_30802924_30803055_30808389_30808432_30808515_30808618_30814102_30814170_30814560
transcript_119237.known	chr7	-	1573	6	FSM	ENSMUSG00000019194.16	ENSMUST00000098548.8	1573	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	3.38230690505755	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTATTCTCTCATTAAC	NA	False	NA	-1	True	AATAAA	-16	NA	30826428	30815948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30816562_30816648_30816721_30817130_30817273_30822330_30822572_30824479_30824647_30826090
transcript_119238.known	chr7	-	1501	5	FSM	ENSMUSG00000019194.16	ENSMUST00000211945.2	1501	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	3.69966214673719	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTATTCTCTCATTAAC	NA	False	NA	-1	True	AATAAA	-16	NA	30826269	30815948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30816721_30817130_30817273_30822330_30822572_30824479_30824647_30826090
transcript_11924.known	chr10	-	3370	12	FSM	ENSMUSG00000062075.14	ENSMUST00000179022.8	3370	12	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCAGAGTAGATCTTCA	3111	False	NA	-1	True	AATAAA	-17	NA	80754079	80737197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
transcript_119249.known	chr7	-	2735	19	FSM	ENSMUSG00000001248.16	ENSMUST00000186634.7	2735	19	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	68.1079390234699	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5735	False	NA	-1	True	AATAAA	-15	NA	30850458	30829551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30834950_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
transcript_119252.known	chr7	-	2713	19	FSM	ENSMUSG00000001248.16	ENSMUST00000001280.14	2713	19	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	41.078853711152	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5686	False	NA	-1	True	AATAAA	-15	NA	30850507	30829551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
transcript_119253.nic	chr7	-	2866	19	NIC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	-107	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_18	68.1823308996809	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	4592	False	NA	-1	True	AATAAA	-15	NA	30851601	30829551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30851261
transcript_119254.nnic	chr7	-	2697	19	NNC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	-76	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_6	69.308132884609	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5610	False	NA	-1	True	AATAAA	-15	NA	30850583	30829551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835113_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
transcript_119255.nic	chr7	-	2678	19	NIC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	-76	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	69.7096270163988	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5610	False	NA	-1	True	AATAAA	-15	NA	30850583	30829551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835132_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
transcript_119257.known	chr7	-	3810	19	FSM	ENSMUSG00000001248.16	ENSMUST00000188032.7	3810	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_18	91.9743657255503	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5756	False	NA	-1	True	AATAAA	-15	NA	30850437	30829551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30845174_30845263_30850320
transcript_119263.known	chr7	-	3722	18	FSM	ENSMUSG00000001248.16	ENSMUST00000185985.7	3722	18	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_17	34.4459860006517	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5756	False	NA	-1	True	AATAAA	-15	NA	30850437	30829551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
transcript_119264.nic	chr7	-	3865	18	NIC	ENSMUSG00000001248.16	novel	3722	18	NA	NA	-27	0	intron_retention	FALSE	canonical	3	23	junction_17	66.5549178755831	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	4672	False	NA	-1	True	AATAAA	-15	NA	30851521	30829551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30851261
transcript_119275.known	chr7	-	1962	8	FSM	ENSMUSG00000036459.16	ENSMUST00000038537.9	1962	8	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_5	31.7027005866976	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCATGGTGGTTATTTCTC	NA	False	NA	-2	True	AATATA	-20	NA	33832693	33808967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_33809665_33816018_33816088_33816736_33816789_33818099_33818231_33818361_33818425_33818563_33818632_33824909_33825012_33831913
transcript_119290.known	chr7	-	2579	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	4178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
transcript_11930.nic	chr10	-	3474	11	NIC	ENSMUSG00000062075.14	novel	3370	12	NA	NA	-35	0	intron_retention	FALSE	canonical	3	226	junction_7	23.5501592351305	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCAGAGTAGATCTTCA	3076	False	NA	-1	True	AATAAA	-17	NA	80754114	80737197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
transcript_119320.known	chr7	-	1435	1	FSM	ENSMUSG00000052997.16	ENSMUST00000206651.2	1435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGGAAACAAGAGCAG	NA	False	NA	NA	False	AAAAAG	-14	NA	33863766	33862331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_33862300_33863800
transcript_119326.known	chr7	-	1295	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTGGTTTATTGTTCA	5732	False	NA	-6	True	TATAAA	-15	NA	33896086	33883923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
transcript_119327.known	chr7	-	959	6	FSM	ENSMUSG00000002635.12	ENSMUST00000148381.3	959	6	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_1	296.710903068964	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5785	False	NA	NA	False	ATTAAA	-20	NA	33896033	33884057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_33884237_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
transcript_119332.known	chr7	-	2884	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTAGGGTTTTATTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	33929761	33900754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
transcript_119333.known	chr7	-	1601	9	FSM	ENSMUSG00000036427.6	ENSMUST00000206603.2	1601	9	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_6	111.622060431619	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	33929688	33914633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
transcript_119338.known	chr7	-	6224	14	FSM	ENSMUSG00000066571.14	ENSMUST00000108074.8	6224	14	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_13	29.0706138861218	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTATCTTTTTTAAATT	9808	False	NA	NA	False	ATTAAA	-18	NA	34012976	33936131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390_33945404_33947531_33947658_33953411_33953510_33955836_33955996_33956771_33956934_33957056_33957153_33957437_33957579_33962977_33963176_33984126_33985379_34012911
transcript_119348.known	chr7	-	2055	2	FSM	ENSMUSG00000066571.14	ENSMUST00000206018.2	2055	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAAAAAAAGATTTATT	9809	False	NA	NA	False	NA	NA	NA	34012975	33983382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_33985379_34012916
transcript_119349.known	chr7	+	4175	2	FSM	ENSMUSG00000085105.3	ENSMUST00000127010.2	4175	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	33933801	33939632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_33933921_33935576
transcript_119354.known	chr7	-	2944	11	FSM	ENSMUSG00000066568.13	ENSMUST00000085585.12	2944	11	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_4	54.3963234051714	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTAACTATTTTGGTT	NA	False	NA	-11	True	AATAAA	-33	NA	34089112	34044070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_34045384_34047350_34047408_34050710_34050943_34052814_34052987_34053089_34053273_34056858_34056922_34057190_34057368_34065039_34065163_34070479_34070610_34074653_34074818_34088782
transcript_119370.nic	chr7	-	1203	7	ISM	ENSMUSG00000066568.13	ENSMUST00000085585.12	2944	11	-34	9020	-34	148	5prime_fragment	FALSE	canonical	3	633	junction_1	50.2449555234708	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATTTTATTTTTCTAC	NA	False	NA	NA	False	AATAAA	-13	NA	34089146	34053090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_34053273_34056858_34056922_34057190_34057368_34065039_34065163_34070479_34070610_34074653_34074818_34088782
transcript_119372.known	chr7	-	2407	7	FSM	ENSMUSG00000030499.10	ENSMUST00000108069.8	2407	7	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_6	8.78761755097605	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGGCTCCGTCCTGTGC	6799	False	NA	-11	True	TATAAA	-8	NA	34353823	34338438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34352008_34352108_34353671
transcript_119373.nnic	chr7	-	2605	7	NNC	ENSMUSG00000030499.10	novel	2480	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	13.6065752079239	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGGCTCCGTCCTGTG	5684	False	NA	-12	True	TATAAA	-7	NA	34354938	34338439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34352008_34352108_34354587
transcript_119374.known	chr7	-	2480	7	FSM	ENSMUSG00000030499.10	ENSMUST00000032709.3	2480	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	13.2664991614216	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACTGAGGCTCCGTCC	5688	False	NA	-16	True	TATAAA	-3	NA	34354934	34338443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34352008_34352108_34354704
transcript_119377.known	chr7	-	2372	4	FSM	ENSMUSG00000060402.9	ENSMUST00000078686.8	2372	4	0	0	0	0	multi-exon	TRUE	canonical	1	5	junction_3	4.02768199119819	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTCCAGCTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	34512111	34373892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_34375670_34376059_34376098_34447486_34447703_34511770
transcript_119382.known	chr7	+	1881	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	595	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCCATCTTCCTC	NA	False	NA	14	True	AATAAA	-19	NA	34611803	34744133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
transcript_119391.known	chr7	-	4709	2	FSM	ENSMUSG00000056216.10	ENSMUST00000130491.3	4709	2	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTCTTATCACGTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	34755998	34745846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_34750358_34755800
transcript_119392.known	chr7	-	399	2	FSM	ENSMUSG00000056216.10	ENSMUST00000206505.2	399	2	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTGTTGGCAAAGGAAC	NA	False	NA	NA	False	NA	NA	NA	34755408	34750289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_34750358_34755077
transcript_119394.known	chr7	-	914	2	FSM	ENSMUSG00000056216.10	ENSMUST00000070191.10	914	2	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTGAACTCGGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	34755365	34749739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_34750358_34755069
transcript_119397.known	chr7	+	2626	1	FSM	ENSMUSG00000034957.11	ENSMUST00000042985.11	2626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTGTCTTTTTAAAAC	NA	False	NA	NA	False	TATAAA	-15	NA	34818727	34821353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_34818700_34821400
transcript_119400.known	chr7	-	3065	20	FSM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_17	13.3084023611853	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTTCTTGATTTCTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	35017865	34975960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_34976237_34980756_34980906_34982995_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007765_35008725_35008812_35009864_35010000_35017765
transcript_119403.nic	chr7	-	2683	19	ISM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	-12	4914	-12	2169	5prime_fragment	FALSE	canonical	3	140	junction_16	13.2935749820155	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAGCAAAAGAATAAGAAA	NA	False	NA	NA	False	AAAAAG	-26	NA	35017877	34980874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_34980906_34982995_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007765_35008725_35008812_35009864_35010000_35017765
transcript_119406.known	chr7	-	2584	18	FSM	ENSMUSG00000063808.15	ENSMUST00000131143.2	2584	18	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_15	38.6016834529004	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGACACAAGAGCAA	NA	False	NA	9	True	AAAAAG	-18	NA	35017865	34983043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007757_35008725_35008812_35009864_35010000_35017765
transcript_119408.nic	chr7	-	2103	15	ISM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	-12	12110	-12	-4994	5prime_fragment	FALSE	canonical	3	140	junction_12	14.3208496498594	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGAGAAGAAAGAGGATTC	NA	False	NA	NA	False	NA	NA	NA	35017877	34988070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007765_35008725_35008812_35009864_35010000_35017765
transcript_119410.nic	chr7	-	1371	11	ISM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	-12	18972	-12	11522	5prime_fragment	FALSE	canonical	3	140	junction_8	14.9599465239686	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAATTAAAGAAGTGAA	NA	False	NA	NA	False	AAAAAG	-6	NA	35017877	34994932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007765_35008725_35008812_35009864_35010000_35017765
transcript_119414.known	chr7	+	3046	16	FSM	ENSMUSG00000030494.14	ENSMUST00000085556.4	3046	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_15	29.2524642836577	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTCTTTTTTCTTTTG	NA	False	NA	22	True	AATAAA	-22	NA	35033754	35091710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179_35090736_35091033
transcript_119418.known	chr7	+	3508	15	FSM	ENSMUSG00000030494.14	ENSMUST00000032705.13	3508	15	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	11.3992928531124	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTGCTTT	NA	False	NA	26	True	AATAAA	-26	NA	35033594	35091714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
transcript_119419.nnic	chr7	+	3403	15	NNC	ENSMUSG00000030494.14	novel	689	2	NA	NA	19166	0	intron_retention	FALSE	canonical	3	27	junction_1	23.30422139214	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTGCTTT	NA	False	NA	26	True	AATAAA	-26	NA	35052920	35091714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_35053058_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
transcript_119427.known	chr7	-	831	5	FSM	ENSMUSG00000030493.14	ENSMUST00000154597.2	831	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	59.3316947339278	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTGGGCAGCCACC	NA	False	NA	NA	False	NA	NA	NA	35096133	35092120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637_35095757_35096110
transcript_119429.known	chr7	-	1857	4	FSM	ENSMUSG00000030493.14	ENSMUST00000032704.12	1857	4	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_2	4.92160768674447	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGATCCACAGGCTATAT	NA	False	NA	NA	False	AATAGA	-24	NA	35096261	35091576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637
transcript_119432.known	chr7	-	1690	3	FSM	ENSMUSG00000030493.14	ENSMUST00000141001.2	1690	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	3.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35096138	35091729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35092517_35094399_35094802_35095637
transcript_119438.known	chr7	+	2825	20	FSM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_17	42.1773724634719	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTTGCATGTTTATTTC	NA	False	NA	8	True	AATAAA	-18	NA	35096459	35138112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339_35129537_35131942_35132033_35134898_35135069_35137752
transcript_119443.known	chr7	+	2610	19	FSM	ENSMUSG00000023072.15	ENSMUST00000079414.12	2610	19	0	0	0	0	multi-exon	FALSE	canonical	2	65	junction_12	24.7032386540712	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCATGTTTATTTCAG	NA	False	NA	10	True	AATAAA	-20	NA	35096479	35138114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
transcript_119452.nic	chr7	+	2561	17	ISM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	-14	8234	-14	-2121	5prime_fragment	FALSE	canonical	2	50	junction_16	33.5018073206506	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGATATTGTCTGTACTCA	NA	False	NA	11	True	AATAAA	-17	NA	35096445	35129878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339
transcript_119461.nnic	chr7	+	1399	12	NNC	ENSMUSG00000023072.15	novel	2610	19	NA	NA	4	959	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_11	38.1133585396715	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGTCATCCCACGTTTT	NA	False	NA	NA	False	NA	NA	NA	35096483	35121618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35121492
transcript_119466.nic	chr7	+	863	8	ISM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	-14	20997	-14	-578	5prime_fragment	FALSE	canonical	3	133	junction_6	11.2231539093728	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTGCGGAGTTAAAAGAAG	NA	False	NA	NA	False	AATACA	-31	NA	35096445	35117115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066
transcript_119468.known	chr7	+	1990	5	FSM	ENSMUSG00000023072.15	ENSMUST00000125041.8	1990	5	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	8.39642781187333	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAGGAAAAATAAAATG	NA	False	NA	NA	False	NA	NA	NA	35096531	35110451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005
transcript_119482.known	chr7	-	1620	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAAATTCTCTTAAAATA	NA	False	NA	-13	True	AATAAA	-33	NA	35237170	35193036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
transcript_119484.nnic	chr7	-	1698	12	NNC	ENSMUSG00000030491.17	novel	1620	12	NA	NA	-13	9	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	137.361139499598	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTGCAGAATTCTTGCT	NA	False	NA	-33	True	AATAAA	-13	NA	35237183	35193056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_35193363_35193610_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
transcript_119485.known	chr7	-	1412	11	FSM	ENSMUSG00000030491.17	ENSMUST00000205407.2	1412	11	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_10	140.166365437647	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCTCTTAAAATATTT	NA	False	NA	-10	True	AATAAA	-36	NA	35237118	35193033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35236938
transcript_119490.nnic	chr7	-	2050	11	Fusion	ENSMUSG00000100068.2_ENSMUSG00000030491.17	novel	769	6	NA	NA	-13	113	multi-exon	FALSE	canonical	3	19	junction_1	140.882362274346	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTTGGTTAGTATTT	NA	False	NA	NA	False	NA	NA	NA	35237183	35196766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_-_35197571_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
transcript_119494.nic	chr7	-	803	6	ISM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	-13	17603	-13	-2439	5prime_fragment	FALSE	canonical	3	416	junction_3	35.2329391337141	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTGAAAGACACGTGGG	NA	False	NA	NA	False	AATAAA	-11	NA	35237183	35210639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
transcript_119501.known	chr7	-	733	3	FSM	ENSMUSG00000034875.6	ENSMUST00000142930.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	165.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTTGCTCCCTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	35254619	35246945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35247549_35250878_35250968_35254578
transcript_119502.known	chr7	-	2298	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	2	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTTTATTCTACT	NA	False	NA	2	True	ATTAAA	-29	NA	35255729	35246609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35247549_35250878_35251087_35254578
transcript_119507.known	chr7	+	1569	1	FSM	ENSMUSG00000097509.2	ENSMUST00000181932.2	1569	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTTGCAGTTGACTTT	NA	False	NA	NA	False	NA	NA	NA	35254791	35256360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_35254800_35256400
transcript_11951.known	chr10	+	1284	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTCTCGTTGTATTTTA	248	False	NA	5	True	AATAAA	-14	NA	80765906	80768038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
transcript_119516.known	chr7	+	4284	29	FSM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_17	26.9819242214835	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGTGCCATTTTTGTG	NA	False	NA	23	True	AGTAAA	-15	NA	35285668	35338651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
transcript_119522.nic	chr7	+	4251	28	NIC	ENSMUSG00000034867.17	novel	4284	29	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_20	54.7169546878799	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGTGCCATTTTTGTG	NA	False	NA	23	True	AGTAAA	-15	NA	35285656	35338651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
transcript_119528.nic	chr7	+	2560	24	ISM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	-12	10777	-12	0	5prime_fragment	FALSE	canonical	3	207	junction_17	27.875228346823	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAATGCAAAACCTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	35285656	35327874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851
transcript_11953.known	chr10	-	3382	4	FSM	ENSMUSG00000048240.15	ENSMUST00000117805.8	3382	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	3.68178700572909	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCGACTCTAAATTATTT	4424	False	NA	0	True	AATAAA	-19	NA	80850779	80784457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80787581_80788664_80788781_80833825_80833879_80850689
transcript_119532.known	chr7	+	1926	12	FSM	ENSMUSG00000034867.17	ENSMUST00000186245.7	1926	12	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_4	23.6388110621019	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTTCAGCCTGGGCTA	NA	False	NA	NA	False	NA	NA	NA	35285674	35308539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745
transcript_119538.known	chr7	-	684	6	FSM	ENSMUSG00000030417.16	ENSMUST00000118501.8	684	6	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	86.0883267348135	739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGATCTGCATTTTG	NA	False	NA	NA	False	NA	NA	NA	35346946	35341406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346730
transcript_119539.known	chr7	-	8006	19	FSM	ENSMUSG00000043671.15	ENSMUST00000051377.15	8006	19	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_12	3.52591814502721	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGTTGTGCCTACATGT	NA	False	NA	NA	False	TATAAA	-30	NA	35453879	35384589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35390368_35392201_35392361_35394706_35394840_35402913_35402997_35406805_35406863_35407484_35407597_35407959_35408083_35411285_35411445_35411569_35411644_35413550_35413653_35416011_35416144_35420969_35421105_35422131_35422256_35424715_35424862_35426714_35426837_35429110_35429202_35449164_35449299_35452039_35452182_35453679
transcript_119546.known	chr7	-	6693	7	FSM	ENSMUSG00000044452.11	ENSMUST00000061586.11	6693	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_5	5.55777733351102	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTCTAAGTTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	35502414	35471767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947_35495044_35500862_35500954_35502258
transcript_11955.known	chr10	-	3796	4	FSM	ENSMUSG00000046822.15	ENSMUST00000117276.11	3796	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	7.58653778449403	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTTTTTTTTGA	NA	False	NA	NA	False	TTTAAA	-6	NA	80873260	80864371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80867535_80869445_80869768_80870751_80870840_80873037
transcript_119552.known	chr7	-	944	6	FSM	ENSMUSG00000044452.11	ENSMUST00000187282.3	944	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	23.3957261054236	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCCAACTAGCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	35502392	35475398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35500862_35500954_35502258
transcript_119554.known	chr7	-	987	1	FSM	ENSMUSG00000044452.11	ENSMUST00000206003.2	987	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGGAGGACCA	NA	False	NA	NA	False	TTTAAA	-24	NA	35502428	35501441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_35501400_35502400
transcript_119555.known	chr7	+	555	1	FSM	ENSMUSG00000066543.9	ENSMUST00000119541.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	False	NA	NA	False	AAGAAA	-34	NA	35817698	35818253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_35817700_35818300
transcript_11956.known	chr10	-	3680	4	FSM	ENSMUSG00000046822.15	ENSMUST00000059551.7	3680	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	25.0377492776186	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTATTTGTTTTTTTT	NA	False	NA	NA	False	TTTAAA	-4	NA	80873142	80864373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80867535_80869445_80869768_80870751_80870844_80873037
transcript_119565.known	chr7	-	3441	11	FSM	ENSMUSG00000030421.10	ENSMUST00000085513.6	3441	11	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_5	45.4049556766659	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGCCTGCTTTATCTA	NA	False	NA	-5	True	ATTAAA	-24	NA	37718967	37659416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37696111_37696147_37718534
transcript_119580.nnic	chr7	-	3460	10	NIC	ENSMUSG00000030421.10	novel	3441	11	NA	NA	-31	0	intron_retention	FALSE	canonical	3	145	junction_9	251.968251968378	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGAGCCTGCTTTATCT	NA	False	NA	-6	True	ATTAAA	-23	NA	37719022	37659417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37718534
transcript_119587.nnic	chr7	-	2523	10	NIC	ENSMUSG00000030421.10	novel	3441	11	NA	NA	-31	-288	intron_retention	FALSE	canonical	3	145	junction_9	251.968251968378	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGAACTTCCTGGTTT	NA	False	NA	0	True	AGTAAA	-27	NA	37719022	37660354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37718534
transcript_119596.nic	chr7	-	757	4	ISM	ENSMUSG00000030421.10	ENSMUST00000206327.2	2453	12	-50	20969	-50	-12006	intron_retention	FALSE	canonical	3	887	junction_2	27.8248490062789	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGTACCTCTTGGGAAGA	NA	False	NA	NA	False	NA	NA	NA	37719041	37681035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_37681172_37682294_37682374_37696111_37696147_37718534
transcript_119602.known	chr7	-	2000	12	FSM	ENSMUSG00000002068.17	ENSMUST00000108023.10	2000	12	0	0	0	0	multi-exon	FALSE	canonical	2	563	junction_4	98.4049652714874	1018	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	False	NA	-12	True	AATAAA	-19	NA	37806959	37797408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
transcript_119610.known	chr7	+	3340	3	FSM	ENSMUSG00000054676.18	ENSMUST00000178207.10	3340	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTCTCTGTGTATTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	37882641	37896992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_37882947_37888030_37888202_37894128
transcript_119611.known	chr7	+	3282	3	FSM	ENSMUSG00000054676.18	ENSMUST00000178876.10	3282	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	1.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTCTCTGTGTATTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	37883077	37896992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_37883325_37888030_37888202_37894128
transcript_119612.known	chr7	-	5263	2	FSM	ENSMUSG00000074170.6	ENSMUST00000098513.6	5263	2	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAACATTACTGAAAG	NA	False	NA	NA	False	ATTAAA	-7	NA	37927440	37916395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_37921583_37927364
transcript_119615.known	chr7	-	2113	7	FSM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_2	18.1567251085284	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCAGCCTCCAATTAAA	NA	False	NA	NA	False	NA	NA	NA	37970847	37961419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968325_37968379_37970570
transcript_119616.nic	chr7	-	2323	7	NIC	ENSMUSG00000030423.8	novel	2113	7	NA	NA	-15	-819	intron_retention	TRUE	canonical	3	24	junction_5	91.4706996195442	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTCAAATTCCTGTACT	NA	False	NA	-4	True	AATAAA	-20	NA	37970812	37962238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37968084_37968325_37968379_37970570
transcript_119623.known	chr7	-	816	4	FSM	ENSMUSG00000030423.8	ENSMUST00000205959.2	816	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_2	16.0485374896143	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATTGTTACTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	37970773	37965295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_37965629_37966792_37967020_37968325_37968379_37970570
transcript_119624.known	chr7	+	2480	6	FSM	ENSMUSG00000030424.16	ENSMUST00000186855.6	2480	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.54400902933387	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTGAGTATGTTTA	NA	False	NA	NA	False	NA	NA	NA	39098941	39126837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_39099078_39109239_39109367_39116765_39116859_39120820_39120931_39122285_39124197_39126734
transcript_11963.nic	chr10	-	2209	12	NIC	ENSMUSG00000004937.7	novel	1969	12	NA	NA	-30	0	combination_of_known_junctions	TRUE	canonical	3	99	junction_11	260.894741448927	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTCTGCTTCCTGTGT	4739	False	NA	-11	True	AATAAA	-17	NA	80896045	80879908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895751
transcript_119631.known	chr7	+	395	1	FSM	ENSMUSG00000056836.9	ENSMUST00000154478.3	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	248	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCACATGAAAGACTAAAAA	NA	False	NA	NA	False	AATAAA	-1	NA	39840360	39840755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_39840400_39840800
transcript_119632.known	chr7	-	2071	5	FSM	ENSMUSG00000056383.11	ENSMUST00000205338.2	2071	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	16.2845785944863	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	41042803	41023213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41042650
transcript_119633.known	chr7	-	3411	4	FSM	ENSMUSG00000074166.8	ENSMUST00000098509.5	3411	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	6.97614984548545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTTTTTCTGTC	NA	False	NA	0	True	AATAAA	-21	NA	41149314	41128297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_41130924_41131989_41132051_41132256_41132384_41148717
transcript_119634.known	chr7	-	637	2	FSM	ENSMUSG00000074166.8	ENSMUST00000205634.2	637	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTACATCCACTGCTCA	NA	False	NA	NA	False	NA	NA	NA	41148851	41140383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_41140887_41148717
transcript_119635.known	chr7	-	1337	2	FSM	ENSMUSG00000074166.8	ENSMUST00000205995.2	1337	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGATGGTGCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	41148832	41139270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_41140493_41148717
transcript_119637.nic	chr7	+	4114	7	NIC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	76.9518247563587	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGGTAATGAATTTCT	NA	False	NA	45	True	AATAAA	-27	NA	41248673	41277957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_41248825_41252859_41252959_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
transcript_119639.known	chr7	+	4004	6	FSM	ENSMUSG00000091474.3	ENSMUST00000163475.3	4004	6	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	46.5403051128804	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGGTAATGAATTTCT	NA	False	NA	45	True	AATAAA	-27	NA	41248684	41277957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_41248825_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
transcript_11964.known	chr10	-	1964	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_11	105.465203223192	1305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	4772	False	NA	-13	True	AATAAA	-15	NA	80896012	80879910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
transcript_119642.known	chr7	+	3058	4	FSM	ENSMUSG00000074165.11	ENSMUST00000045720.14	3058	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	14.6363322667334	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAGAATATGTTTTCATT	NA	False	NA	53	True	NA	NA	NA	41282987	41300355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_41283119_41296914_41297042_41297242_41297304_41297616
transcript_119643.nnic	chr7	-	3604	10	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-20	84689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	132.325449900456	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTACGGTTTCAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	42155184	42038120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_42038206_42048127_42048406_42048513_42048567_42123694_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
transcript_119650.known	chr7	-	4069	7	FSM	ENSMUSG00000092416.3	ENSMUST00000174407.3	4069	7	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	65.4285021140549	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	-15	True	AATAAA	-15	NA	42155150	42122809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42150781_42150850_42155033
transcript_119660.nic	chr7	-	4035	6	NIC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	125	junction_5	88.2813683627525	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	-15	True	AATAAA	-15	NA	42155184	42122809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42155033
transcript_119663.nic	chr7	-	3714	6	NIC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-20	-321	combination_of_known_junctions	FALSE	canonical	3	125	junction_5	88.2813683627525	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAATGAACTACATATGT	NA	False	NA	NA	False	NA	NA	NA	42155184	42123130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42155033
transcript_119673.known	chr7	-	3148	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342142	42309528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
transcript_119674.known	chr7	-	4073	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTTTCATTAGTAATTT	NA	False	NA	-14	True	AATAAA	-14	NA	42516658	42466252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
transcript_119675.known	chr7	+	3112	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATTTTTAATTATG	NA	False	NA	NA	False	AATGAA	-10	NA	42827011	42841533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
transcript_119676.known	chr7	+	578	5	FSM	ENSMUSG00000064194.11	ENSMUST00000200973.4	578	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	196.935268552893	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGCTATCTTCGAA	NA	False	NA	NA	False	NA	NA	NA	42827046	42838926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838466_42838575_42838725
transcript_119679.known	chr7	-	4184	5	FSM	ENSMUSG00000012640.17	ENSMUST00000107986.9	4184	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	14.2894191624432	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTTCATATTGCTTT	NA	False	NA	0	True	AATAAA	-16	NA	42962679	42945946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960610_42962527
transcript_119681.nic	chr7	-	4266	5	NIC	ENSMUSG00000012640.17	novel	4363	6	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	30.589009464185	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTTCATATTGCTTT	NA	False	NA	0	True	AATAAA	-16	NA	42962696	42945946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960675_42962527
transcript_119684.known	chr7	+	558	2	FSM	ENSMUSG00000118553.2	ENSMUST00000239023.2	558	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCTGAAGAGCATCCAGT	NA	False	NA	NA	False	NA	NA	NA	43077109	43078256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43077145_43077733
transcript_119685.known	chr7	+	893	6	FSM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	1745	junction_1	117.194539121923	1200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGGATGTCCTTGTTT	1908	False	NA	52	True	AATAAA	-35	NA	43093506	43107224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43106993
transcript_119686.known	chr7	+	3495	5	FSM	ENSMUSG00000056592.15	ENSMUST00000107972.8	3495	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTGTACATTATTTCT	NA	False	NA	NA	False	TTTAAA	-4	NA	43211679	43224885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43211846_43214037_43214268_43216691_43216819_43217068_43217168_43222012
transcript_119688.known	chr7	+	4494	4	FSM	ENSMUSG00000030469.11	ENSMUST00000058104.8	4494	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCATTGTTTTCTCATCC	7267	False	NA	NA	False	NA	NA	NA	43229033	43242659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43229191_43233491_43233721_43235777_43235905_43238678
transcript_119695.known	chr7	+	2362	5	FSM	ENSMUSG00000055102.16	ENSMUST00000032661.14	2362	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	20.1416856295594	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2892	False	NA	7	True	AATAAA	-21	NA	43256648	43267709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43256699_43259209_43259403_43261406_43261534_43261970_43262064_43265810
transcript_119697.nic	chr7	+	2442	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTTATTTTAAATACAC	2786	False	NA	7	True	AATAAA	-15	NA	43256542	43267640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
transcript_119698.nic	chr7	+	2455	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2842	False	NA	7	True	AATAAA	-21	NA	43256598	43267709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
transcript_119703.known	chr7	+	2156	4	FSM	ENSMUSG00000055102.16	ENSMUST00000120935.2	2156	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	36.4630711207319	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTTATTTTAAATACAC	2836	False	NA	7	True	AATAAA	-15	NA	43256592	43267640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43256699_43261406_43261534_43261970_43262064_43265810
transcript_119710.known	chr7	+	2475	3	FSM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	1	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTTTTGGTCTGGTGTT	NA	False	NA	8	True	NA	NA	NA	43321439	43327722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43321500_43324527_43325071_43325850
transcript_119712.known	chr7	+	1809	6	FSM	ENSMUSG00000054046.8	ENSMUST00000066834.8	1809	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	24.8161237907938	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTGTTTTGT	NA	False	NA	17	True	CATAAA	-21	NA	43361990	43376958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43362129_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_119713.nnic	chr7	+	1077	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-323	-780	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	15.8694675399019	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362499	43376178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_119715.nnic	chr7	+	1085	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-318	-780	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.3245957266899	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362504	43376178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_43362686_43363202_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_119724.known	chr7	+	1312	6	FSM	ENSMUSG00000067616.12	ENSMUST00000080211.12	1312	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	3.00665927567458	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTGTTGAGTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	43424027	43428687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43424226_43425903_43425979_43426304_43426462_43426911_43427178_43427753_43427891_43428208
transcript_119727.known	chr7	+	955	5	FSM	ENSMUSG00000067616.12	ENSMUST00000206165.2	955	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.35410196624968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCAACCCCTCCAACC	NA	False	NA	NA	False	NA	NA	NA	43425752	43428377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43425979_43426304_43426462_43426911_43427178_43427753_43427891_43428208
transcript_119730.known	chr7	+	1373	6	FSM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_4	14.5134420452214	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAATGTGTGTGCCTCT	355	False	NA	9	True	ATTAAA	-16	NA	43430458	43434834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43430571_43430922_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
transcript_119731.known	chr7	+	1322	5	FSM	ENSMUSG00000064023.5	ENSMUST00000085461.4	1322	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	3.90512483795333	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCGACTGTGCTTTGACC	2877	False	NA	28	True	AATAAA	-18	NA	43447000	43453246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43447557_43448047_43448208_43448488_43448752_43451503_43451638_43453037
transcript_119732.known	chr7	+	954	5	FSM	ENSMUSG00000063903.6	ENSMUST00000075162.5	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	17.0934929139717	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAGTTCTGACATTCTC	NA	False	NA	7	True	AATAAA	-21	NA	43874783	43879042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43874949_43876944_43877105_43877951_43878239_43878334_43878472_43878837
transcript_119738.nic	chr7	+	2294	8	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	337.565594532744	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896143	43901739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_43896233_43896661_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119744.known	chr7	+	988	8	FSM	ENSMUSG00000045411.17	ENSMUST00000146155.8	988	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	335.825391948779	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTGACCCAGAAGGGCC	NA	False	NA	NA	False	NA	NA	NA	43896210	43900498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43896248_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119750.nnic	chr7	+	2232	7	NNC	ENSMUSG00000045411.17	novel	2131	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	324.736303278008	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896143	43901739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_43896233_43896661_43896841_43897675_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119751.known	chr7	+	759	7	FSM	ENSMUSG00000045411.17	ENSMUST00000185481.7	759	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	300.418411922808	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTTGAGGCCACCG	NA	False	NA	NA	False	NA	NA	NA	43896177	43900401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43896233_43896674_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119753.known	chr7	+	676	7	FSM	ENSMUSG00000045411.17	ENSMUST00000187524.7	676	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	348.685826433418	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTCAGCGTTGGGAATCC	NA	False	NA	NA	False	GGGGCT	-38	NA	43896222	43900379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43896233_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119758.nnic	chr7	+	2241	7	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_3	313.179084373285	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896149	43901739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_43896248_43896661_43896841_43897675_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119759.known	chr7	+	2092	7	FSM	ENSMUSG00000045411.17	ENSMUST00000084937.11	2092	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	279.849612391291	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119762.nnic	chr7	+	2073	7	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	349.374997515404	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896200	43901739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_43896248_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119767.known	chr7	+	509	6	FSM	ENSMUSG00000045411.17	ENSMUST00000188476.7	509	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	295.191192280529	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCACCATGGTGATATGTT	NA	False	NA	NA	False	NA	NA	NA	43896231	43899905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732
transcript_119770.known	chr7	+	2908	6	FSM	ENSMUSG00000045411.17	ENSMUST00000107948.8	2908	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	279.671664635515	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGGGTGTGCTGTTTG	NA	False	NA	18	True	ATTAAA	-18	NA	43896214	43901737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43896248_43896674_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119771.nnic	chr7	+	2047	6	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_2	300.883100223326	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896164	43901739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_43896248_43897675_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119772.known	chr7	+	784	6	FSM	ENSMUSG00000045411.17	ENSMUST00000137702.8	784	6	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	258.311904487579	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCTGCTCACAGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	43896151	43900566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43896233_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119776.known	chr7	+	367	5	FSM	ENSMUSG00000045411.17	ENSMUST00000187581.7	367	5	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	236.591816215185	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGAGGGGTTTCCATTC	NA	False	NA	NA	False	NA	NA	NA	43896241	43899952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732
transcript_119780.known	chr7	+	3336	5	FSM	ENSMUSG00000045411.17	ENSMUST00000107950.9	3336	5	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_3	44.6933999601731	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896212	43901736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_119781.known	chr7	+	3610	4	FSM	ENSMUSG00000045411.17	ENSMUST00000107949.8	3610	4	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_3	48.6095555306659	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896210	43901736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732
transcript_119782.known	chr7	+	2301	2	FSM	ENSMUSG00000045411.17	ENSMUST00000188382.2	2301	2	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43899017	43901739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_43899024_43899444
transcript_119784.known	chr7	+	2627	11	FSM	ENSMUSG00000030731.14	ENSMUST00000118831.8	2627	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.15142259969188	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCGTGTGCTTCTAAAA	NA	False	NA	NA	False	NA	NA	NA	44033577	44049611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44033601_44034229_44034374_44035352_44035546_44039919_44040449_44041822_44042196_44042772_44042992_44044833_44044955_44045062_44045235_44045326_44045460_44048509_44048578_44048959
transcript_119786.known	chr7	+	2494	11	FSM	ENSMUSG00000030731.14	ENSMUST00000118962.8	2494	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	3.88458491991101	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCACCTGTCTCCCTGGG	NA	False	NA	16	True	AATAAA	-18	NA	44033525	44049453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44033601_44034229_44034374_44035379_44035546_44039919_44040449_44041822_44042196_44042772_44042992_44044833_44044955_44045062_44045235_44045326_44045460_44048509_44048578_44048959
transcript_119788.known	chr7	-	913	6	FSM	ENSMUSG00000008028.16	ENSMUST00000107933.8	913	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	8.25590697622012	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTCTCTCGGCAAAGT	NA	False	NA	NA	False	TATAAA	-19	NA	44024454	44009466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44009806_44010473_44010608_44012075_44012197_44012366_44012440_44023746_44023949_44024410
transcript_119790.known	chr7	-	1662	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	346.110162950988	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145830	44139534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
transcript_119796.known	chr7	-	1855	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATTTCTTGGTTCATTC	NA	False	NA	27	True	NA	NA	NA	44145937	44139361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
transcript_119798.nic	chr7	-	1947	7	NIC	ENSMUSG00000008140.19	novel	1662	8	NA	NA	-1	-15	intron_retention	FALSE	canonical	3	278	junction_1	282.765509447905	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCTTCAGCTCACTTCC	NA	False	NA	-16	True	ATTAAA	-16	NA	44145938	44139549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
transcript_119801.known	chr7	-	701	6	FSM	ENSMUSG00000008140.19	ENSMUST00000138328.3	701	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	410.265280032322	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAGGCCAAGAACCCACA	NA	False	NA	NA	False	NA	NA	NA	44145852	44141426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44141473_44141567_44141750_44141977_44142083_44142601_44142724_44144231_44144305_44145679
transcript_119802.known	chr7	+	862	5	FSM	ENSMUSG00000051113.10	ENSMUST00000107927.5	862	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.78535710713571	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTGGTTCTTTATGTGA	5405	False	NA	NA	False	AATAAA	-27	NA	44146004	44150564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44146155_44146338_44146458_44146926_44147058_44149573_44149863_44150391
transcript_119803.known	chr7	-	3611	28	FSM	ENSMUSG00000038670.12	ENSMUST00000165208.4	3611	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	5.68394847207433	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTGTAGTTCTTGTCC	NA	False	NA	5	True	GATAAA	-37	NA	44174080	44151122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44151267_44153060_44153248_44154422_44154560_44154659_44154820_44154989_44155130_44155475_44155672_44156231_44156321_44156458_44156627_44157654_44157790_44158392_44158582_44158957_44159063_44159154_44159315_44161232_44161373_44161515_44161546_44161884_44161992_44163091_44163258_44164272_44164446_44165349_44165456_44165566_44165692_44165806_44165940_44166234_44166429_44169756_44169817_44170162_44170212_44171098_44171217_44171403_44171553_44171744_44171832_44172254_44172333_44173994
transcript_119818.nnic	chr7	-	3404	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	285.453796300706	166	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGGCTGTGTGTTGTGGT	NA	False	NA	-7	True	AATAAA	-16	NA	44198280	44182174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192249_44192664_44192861_44198178
transcript_119821.known	chr7	-	3454	27	FSM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_26	151.95728923444	2615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGTGGTCTTTG	NA	False	NA	-2	True	AATAAA	-21	NA	44198271	44182169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
transcript_119859.known	chr7	-	3302	26	FSM	ENSMUSG00000038644.15	ENSMUST00000151793.8	3302	26	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_5	286.751320833924	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACACGGGACAAGGAATAAA	NA	False	NA	-42	True	NA	NA	NA	44198262	44182209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
transcript_1199.known	chr1	-	2975	7	FSM	ENSMUSG00000026080.15	ENSMUST00000027249.13	2975	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_6	2.75378527364305	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATCTGGGTTTGATTGT	NA	False	NA	NA	False	ATTAAA	-26	NA	38937091	38902947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_38905117_38907061_38907168_38910681_38910917_38913029_38913122_38923430_38923563_38935017_38935138_38936970
transcript_119922.nic	chr7	-	2067	10	NIC	ENSMUSG00000060601.14	novel	1988	10	NA	NA	-87	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	218.641823340321	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203462	44199055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203228
transcript_119923.nic	chr7	-	1995	10	NIC	ENSMUSG00000060601.14	novel	1948	10	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	233.415699748087	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203387	44199055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202182_44203002_44203133_44203228
transcript_119926.nic	chr7	-	2013	10	NIC	ENSMUSG00000060601.14	novel	1999	10	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	206.953087067851	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203399	44199055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203228
transcript_119927.known	chr7	-	1944	10	FSM	ENSMUSG00000060601.14	ENSMUST00000167197.8	1944	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	223.571073020098	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203347	44199075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002_44203133_44203228
transcript_11993.known	chr10	-	642	4	FSM	ENSMUSG00000004937.7	ENSMUST00000220202.2	642	4	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_3	126.67631542198	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATGCTTTAAAGTGGCA	4769	False	NA	NA	False	AATATA	-2	NA	80896015	80886572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80886918_80887056_80887164_80887949_80888086_80895961
transcript_119939.nic	chr7	-	2274	9	NIC	ENSMUSG00000060601.14	novel	1853	9	NA	NA	-24	0	intron_retention	FALSE	canonical	1	2	junction_8	200.783737825054	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203399	44199055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202179_44203002_44203133_44203228
transcript_119940.nic	chr7	-	2270	9	NIC	ENSMUSG00000060601.14	novel	1944	10	NA	NA	-17	0	intron_retention	FALSE	canonical	1	2	junction_8	223.616161088594	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203392	44199055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202182_44203002_44203133_44203228
transcript_119980.known	chr7	-	1999	10	FSM	ENSMUSG00000060601.14	ENSMUST00000073488.12	1999	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	207.457626195488	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203373	44199039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203232
transcript_119981.known	chr7	-	1988	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107911.8	1988	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	219.110209599227	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGAGCCCAGTGTGGA	NA	False	NA	-1	True	AATAAA	-30	NA	44203372	44199040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203232
transcript_119982.known	chr7	+	1560	9	FSM	ENSMUSG00000002204.10	ENSMUST00000002274.10	1560	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	2.82842712474619	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTTCCATGGAAGGAT	2542	False	NA	NA	False	ATTAAA	-18	NA	44221803	44236286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44222114_44230627_44230764_44230844_44230969_44231106_44231226_44231765_44231966_44234422_44234546_44234642_44234788_44235137_44235237_44235982
transcript_119985.nic	chr7	+	3018	7	NIC	ENSMUSG00000062785.15	novel	2960	6	NA	NA	-55	104	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	2.96741563579414	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAACCTCAGGTCTCCATG	4058	False	NA	NA	False	NA	NA	NA	44240254	44251669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_44241183_44244584_44245693_44247013_44247044_44247807_44248000_44248229_44248358_44250097_44250353_44251292
transcript_119992.known	chr7	+	2731	5	FSM	ENSMUSG00000062785.15	ENSMUST00000207493.2	2731	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.20156211871642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGGGCCTCTCACTCCC	3891	False	NA	NA	False	AAAAAG	-37	NA	44240087	44251565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44241183_44244584_44245693_44247804_44248000_44250292_44250353_44251292
transcript_119993.known	chr7	+	2728	5	FSM	ENSMUSG00000062785.15	ENSMUST00000208651.2	2728	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.77491721763537	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGGGCCTCTCACTCCC	3891	False	NA	NA	False	AAAAAG	-37	NA	44240087	44251565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44241183_44244584_44245693_44247807_44248000_44250292_44250353_44251292
transcript_119995.nic	chr7	+	2669	2	ISM	ENSMUSG00000062785.15	ENSMUST00000209177.2	2960	6	228	4118	6	1191	5prime_fragment	FALSE	canonical	2	5	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCCAGGCGTGGTGCC	4119	False	NA	NA	False	NA	NA	NA	44240315	44246386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_44241183_44244584
transcript_12.known	ERCC-00039	+	724	1	FSM	ERCC-00039A	DQ883656	724	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00039_+_0_700
transcript_120002.nnic	chr7	-	3753	21	NNC	ENSMUSG00000030739.19	novel	6390	40	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_20	20.5294909824866	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44280052	44255228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44279992
transcript_120003.nic	chr7	-	3915	21	ISM	ENSMUSG00000030739.19	ENSMUST00000107899.10	6390	40	34566	2	-353	0	3prime_fragment	FALSE	canonical	3	29	junction_14	18.5391477689779	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44280359	44255228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263716_44263846_44264768_44264931_44265523_44265737_44271161_44271375_44272399_44272649_44273501_44273655_44273743_44273849_44274389_44274597_44274787_44274933_44276435_44276649_44277891_44278064_44278188_44278313_44278683_44278822_44279280_44279488_44280137
transcript_120006.known	chr7	-	1438	7	FSM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_6	22.8837642591132	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44263549	44255228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263374
transcript_120010.known	chr7	+	1969	15	FSM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	19.1081775420785	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGAGAGTTCAGTGTTC	NA	False	NA	16	True	AATAAA	-16	NA	44397836	44426939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
transcript_120012.nic	chr7	-	3993	5	NIC	ENSMUSG00000048012.20	novel	3800	5	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	16.8077363139716	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAATGTTCACTGGCTATT	NA	False	NA	-16	True	AATAAA	-13	NA	44397795	44380914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44384070_44387389_44387456_44388926_44389060_44391112_44391290_44397333
transcript_120014.known	chr7	-	3091	5	FSM	ENSMUSG00000048012.20	ENSMUST00000118162.8	3091	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	23.9217474278114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTCATCTAGACCCGCG	NA	False	NA	NA	False	AATAAA	-26	NA	44397730	44381432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44384070_44387389_44387456_44388926_44389060_44391112_44391290_44397652
transcript_120015.known	chr7	-	3559	5	FSM	ENSMUSG00000048012.20	ENSMUST00000120798.8	3559	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	24.8633766813762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCGCTGTGGTTAATGT	NA	False	NA	-28	True	AATAAA	-1	NA	44397815	44380926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44384070_44387389_44387456_44388926_44389060_44391112_44391290_44397775
transcript_120017.known	chr7	-	1006	5	FSM	ENSMUSG00000048012.20	ENSMUST00000140599.9	1006	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	7.63216876123687	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGGATCATCAGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	44397773	44383882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397333
transcript_120018.known	chr7	-	3624	5	FSM	ENSMUSG00000048012.20	ENSMUST00000120074.8	3624	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	25.0499500997507	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGAAATAAAGTGTTCGC	NA	False	NA	-40	True	GATAAA	-2	NA	44397473	44380938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397359
transcript_120020.known	chr7	-	3800	5	FSM	ENSMUSG00000048012.20	ENSMUST00000060270.13	3800	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	22.9605640174626	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAATGTTCACTGGCTATT	NA	False	NA	-16	True	AATAAA	-13	NA	44398041	44380914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397775
transcript_120027.known	chr7	-	2362	17	FSM	ENSMUSG00000038520.16	ENSMUST00000145959.8	2362	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	59.8690954813082	951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCTGGCTGGCATCAGG	7699	False	NA	-10	True	AATAAA	-15	NA	44498503	44490455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491609_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
transcript_120042.known	chr7	-	2411	16	FSM	ENSMUSG00000038520.16	ENSMUST00000139947.8	2411	16	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_3	26.7432234407148	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCACGGTGTAGTGTTCA	7867	False	NA	NA	False	NA	NA	NA	44498335	44490324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44490845_44490966_44491054_44491406_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
transcript_12005.known	chr10	+	2832	13	FSM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	0	0	0	0	multi-exon	TRUE	canonical	3	459	junction_3	51.2387521532504	1937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATATCAGACAGTGAGCA	5450	False	NA	NA	False	NA	NA	NA	80905868	80918393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
transcript_120066.known	chr7	+	2275	9	FSM	ENSMUSG00000074141.14	ENSMUST00000118125.9	2275	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.24079886342184	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTCACTTCCCTCC	383	False	NA	5	True	AATAAA	-16	NA	44465819	44490228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44465908_44481539_44481606_44483374_44483517_44486054_44486291_44486799_44486913_44487412_44487615_44488574_44488644_44488747_44488885_44489006
transcript_120085.known	chr7	+	1592	5	FSM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	63.711753232822	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGTGTGTGAGTGTGA	1400	False	NA	19	True	ATTAAA	-24	NA	44498647	44504845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44498773_44501994_44502384_44503203_44503282_44503362_44503533_44504015
transcript_120086.known	chr7	+	1160	5	FSM	ENSMUSG00000011096.18	ENSMUST00000107882.8	1160	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	107.27622057101	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAACAGAAAGCCTTGGCCT	1805	False	NA	NA	False	NA	NA	NA	44499052	44504160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44499431_44501994_44502384_44503203_44503282_44503362_44503533_44504015
transcript_120090.known	chr7	+	1757	5	FSM	ENSMUSG00000011096.18	ENSMUST00000107880.9	1757	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	128.154203988788	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGTGTGTGAGTGTGA	2183	False	NA	19	True	ATTAAA	-24	NA	44499430	44504845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44499721_44501994_44502384_44503203_44503282_44503362_44503533_44504015
transcript_120095.known	chr7	+	333	4	FSM	ENSMUSG00000011096.18	ENSMUST00000142880.3	333	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	146.669696938393	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCATGCGCGCGCTGGTG	1471	False	NA	NA	False	NA	NA	NA	44498718	44504046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44498773_44503203_44503282_44503362_44503533_44504015
transcript_120099.known	chr7	-	1816	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	35.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGTCTTATCTTTGA	9686	False	NA	0	True	AATAAA	-19	NA	44466082	44461679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44462945_44464412_44464707_44465825
transcript_1201.known	chr1	-	2996	6	FSM	ENSMUSG00000026080.15	ENSMUST00000194361.7	2996	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	5.15363949069005	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACAAAAGTGTATCTGG	NA	False	NA	NA	False	ATTAAA	-16	NA	38937242	38902957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_38905117_38907061_38907168_38910681_38910917_38913029_38913122_38923430_38923563_38936970
transcript_120100.known	chr7	+	2722	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	0	0	0	0	multi-exon	FALSE	canonical	3	986	junction_1	0	2486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTGAGTATGGGTAG	75	False	NA	21	True	AATAAA	-21	NA	44465511	44480236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44465908_44477910
transcript_120101.known	chr7	+	715	2	FSM	ENSMUSG00000109511.2	ENSMUST00000208172.2	715	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGTGGCAGTGCATCCC	287	False	NA	NA	False	NA	NA	NA	44465723	44478465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44465884_44477910
transcript_120102.known	chr7	+	2708	2	FSM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGCTGTGAGTATGGG	75	False	NA	18	True	AATAAA	-18	NA	44465511	44480233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44465897_44477910
transcript_120104.known	chr7	+	1770	17	FSM	ENSMUSG00000002963.18	ENSMUST00000107876.8	1770	17	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	53.8118466859297	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9315	False	NA	15	True	AATAAA	-17	NA	44506562	44512074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44506727_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_120107.known	chr7	+	2184	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGACTTAGCAGCTGTGT	9335	False	NA	90	True	NA	NA	NA	44506582	44512416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_120113.known	chr7	+	1550	15	FSM	ENSMUSG00000002963.18	ENSMUST00000098478.7	1550	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	63.3371686987626	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACAGCCATCTTGCTGG	9518	False	NA	14	True	AATAAA	-16	NA	44506765	44512073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_120117.nnic	chr7	+	1512	15	NNC	ENSMUSG00000002963.18	novel	2184	16	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	61.2335775568288	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACAGCCATCTTGCTGG	9493	False	NA	14	True	AATAAA	-16	NA	44506740	44512073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_44506979_44508000_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_120129.nic	chr7	-	1761	13	NIC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	-61	0	combination_of_known_junctions	FALSE	canonical	3	386	junction_1	117.813647577671	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTCCCTCCCTGCTTG	5379	False	NA	-8	True	AATAAA	-15	NA	44519273	44512490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44512619_44512802_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
transcript_120137.nic	chr7	-	2411	12	NIC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	-61	0	intron_retention	FALSE	canonical	3	386	junction_1	122.965627126224	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTCCCTCCCTGCTTG	5379	False	NA	-8	True	AATAAA	-15	NA	44519273	44512490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44512619_44512802_44512869_44512958_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
transcript_120141.known	chr7	-	1883	12	FSM	ENSMUSG00000038502.18	ENSMUST00000046575.17	1883	12	0	0	0	0	multi-exon	FALSE	canonical	3	715	junction_7	41.0738097969944	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTCCCTCCCTGCTT	5440	False	NA	-9	True	AATAAA	-14	NA	44519212	44512491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
transcript_120156.nic	chr7	-	2592	11	NIC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	-59	0	intron_retention	FALSE	canonical	3	715	junction_6	42.6240542417072	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTCCCTCCCTGCTT	5381	False	NA	-9	True	AATAAA	-14	NA	44519271	44512491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44512869_44512958_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
transcript_120169.nic	chr7	-	2660	10	NIC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	-50	0	intron_retention	FALSE	canonical	3	715	junction_5	41.8810779631808	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTCCCTCCCTGCTT	5390	False	NA	-9	True	AATAAA	-14	NA	44519262	44512491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44512869_44512958_44513912_44514035_44514094_44514185_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798_44516937_44518774
transcript_1202.known	chr1	+	3914	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATTGTAAGATTTATT	NA	False	NA	3	True	AATACA	-13	NA	39024688	39036319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
transcript_120200.known	chr7	-	657	7	FSM	ENSMUSG00000038502.18	ENSMUST00000207416.2	657	7	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	156.981598355419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTCCCTCCCTGCTTG	NA	False	NA	-8	True	AATAAA	-15	NA	44514364	44512490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44512619_44512802_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336
transcript_120209.known	chr7	-	3693	18	FSM	ENSMUSG00000002968.10	ENSMUST00000208253.2	3693	18	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	207.582576223432	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGGCCGTGGGCTTTCC	6976	False	NA	-4	True	NA	NA	NA	44541815	44526188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44527715_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_120218.known	chr7	-	2619	18	FSM	ENSMUSG00000002968.10	ENSMUST00000003049.8	2619	18	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_9	66.5493546850497	1312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	9929	False	NA	-6	True	AATAAA	-17	NA	44542136	44528807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_12024.known	chr10	+	1877	2	FSM	ENSMUSG00000004929.13	ENSMUST00000167658.2	1877	2	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTGGGCTGCCCCCTT	5542	False	NA	NA	False	AAGAAA	-1	NA	80905960	80910711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80906113_80908986
transcript_120241.nic	chr7	-	2265	17	NIC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_3	203.468018064265	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	6937	False	NA	-6	True	AATAAA	-17	NA	44541854	44528807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44528939_44529350_44529529_44529675_44529895_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_120246.known	chr7	-	2678	17	FSM	ENSMUSG00000002968.10	ENSMUST00000208551.2	2678	17	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_8	64.3087948398195	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	7001	False	NA	-13	True	AATAAA	-10	NA	44541790	44528814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_120253.known	chr7	-	2287	16	FSM	ENSMUSG00000002968.10	ENSMUST00000207278.2	2287	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	290.277384582402	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	6948	False	NA	-13	True	AATAAA	-10	NA	44541843	44528814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541568
transcript_120277.known	chr7	-	2427	3	FSM	ENSMUSG00000002968.10	ENSMUST00000207196.2	2427	3	0	0	0	0	multi-exon	FALSE	canonical	3	955	junction_1	18.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAAACAAAACAA	6950	False	NA	NA	False	NA	NA	NA	44541841	44539137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44541332_44541522_44541569_44541654
transcript_120281.known	chr7	-	3449	24	FSM	ENSMUSG00000060279.15	ENSMUST00000166972.9	3449	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	223.313676494837	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGACTGCCCACCCTG	NA	False	NA	-2	True	AATAAA	-25	NA	44578920	44549796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551139_44552172_44552263_44552397_44552481_44552567_44552625_44552885_44552952_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
transcript_120291.known	chr7	-	3301	23	FSM	ENSMUSG00000060279.15	ENSMUST00000107857.11	3301	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	144.442358888666	1417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTACCCCAGCTATTGA	NA	False	NA	-14	True	AATAAA	-13	NA	44578850	44549808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551139_44552172_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
transcript_12033.nnic	chr10	+	1486	11	NNC	ENSMUSG00000035027.19	novel	1556	11	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_7	209.447368090411	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGGCTGTGCTCCTGCC	1074	False	NA	13	True	NA	NA	NA	80941722	80959717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_80942073_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955410_80956879_80956945_80957736_80957799_80958400_80958447_80959453
transcript_120335.known	chr7	+	1698	11	FSM	ENSMUSG00000011658.17	ENSMUST00000071207.14	1698	11	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	12.7373466624725	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGGCTCTTTGCTGTCG	NA	False	NA	26	True	AATAAA	-37	NA	44545502	44550048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44547926_44548125_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
transcript_120340.known	chr7	+	1453	10	FSM	ENSMUSG00000011658.17	ENSMUST00000209039.2	1453	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	26.1448954015034	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTCCCAGGCGCCCCCA	NA	False	NA	6	True	AATAAA	-17	NA	44545529	44550028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
transcript_120345.known	chr7	+	2717	8	FSM	ENSMUSG00000011658.17	ENSMUST00000207480.2	2717	8	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	10.3903408834104	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGGCTCTTTGCTGTCG	NA	False	NA	26	True	AATAAA	-37	NA	44545516	44550048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44548125_44548199_44548296_44548408_44548811_44549556
transcript_120349.known	chr7	-	3376	23	FSM	ENSMUSG00000060279.15	ENSMUST00000167930.8	3376	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	144.442358888666	1222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATTGACTGCCCACCCT	NA	False	NA	-3	True	AATAAA	-24	NA	44578914	44549797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551140_44552173_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
transcript_12035.known	chr10	+	1556	11	FSM	ENSMUSG00000035027.19	ENSMUST00000105331.8	1556	11	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_7	62.3128397683816	1083	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGGCTGTGCTCCTGCC	1132	False	NA	13	True	NA	NA	NA	80941780	80959717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80942073_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956879_80956945_80957736_80957799_80958400_80958447_80959453
transcript_120350.nic	chr7	+	1911	11	NIC	ENSMUSG00000059891.15	novel	1843	11	NA	NA	-34	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_2	3.77359245282264	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACAACTATACTTTTT	1365	False	NA	NA	False	AATAAA	-23	NA	44592593	44607459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_44592878_44593205_44593429_44600202_44600299_44600462_44600547_44601286_44601371_44601969_44602257_44603170_44603366_44603737_44603912_44605875_44606012_44606977_44607146_44607279
transcript_120352.nic	chr7	+	1868	11	NIC	ENSMUSG00000059891.15	novel	1843	11	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	3.84837628097877	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACAACTATACTTTTT	1365	False	NA	NA	False	AATAAA	-23	NA	44592593	44607459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_44592878_44593205_44593429_44600202_44600299_44600462_44600547_44601286_44601371_44601969_44602257_44603170_44603366_44603737_44603912_44605875_44606012_44607020_44607146_44607279
transcript_120353.known	chr7	+	1806	11	FSM	ENSMUSG00000059891.15	ENSMUST00000080233.9	1806	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.57910603363466	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGACAACTATACTT	1456	False	NA	NA	False	AATAAA	-20	NA	44592684	44607456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44592878_44593205_44593429_44600202_44600299_44600462_44600547_44601286_44601371_44601969_44602257_44603170_44603366_44603737_44603912_44605875_44606012_44607020_44607178_44607279
transcript_120357.known	chr7	+	1843	11	FSM	ENSMUSG00000059891.15	ENSMUST00000120929.9	1843	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	4.03112887414927	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACAACTATACTTTTT	1417	False	NA	NA	False	AATAAA	-23	NA	44592645	44607459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44592878_44593205_44593429_44600202_44600299_44600462_44600547_44601259_44601371_44601969_44602257_44603170_44603366_44603737_44603912_44605875_44606012_44607020_44607146_44607279
transcript_120363.known	chr7	-	2793	19	FSM	ENSMUSG00000007783.11	ENSMUST00000063761.8	2793	19	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_13	17.8819862459058	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCACTGTGCTTTTCTGCG	2664	False	NA	-2	True	AATAAA	-20	NA	44624275	44608796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433_44622574_44623150_44623305_44624018
transcript_120368.nnic	chr7	-	2204	14	NNC	ENSMUSG00000007783.11	novel	2716	19	NA	NA	2453	0	intron_retention	FALSE	canonical	2	5	junction_13	22.7783245873334	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACTGTGCTTTTCTGCGG	6891	False	NA	-1	True	AATAAA	-21	NA	44620048	44608795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619675
transcript_120381.known	chr7	-	1508	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635992	44626181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
transcript_120388.known	chr7	-	2147	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	0	0	0	0	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	2574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGGCTGTTTGCGTGGTT	NA	False	NA	NA	False	NA	NA	NA	44635916	44625412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
transcript_120404.known	chr7	+	2031	8	FSM	ENSMUSG00000003184.16	ENSMUST00000003284.16	2031	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	29.0601066054199	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTGG	NA	False	NA	NA	False	AAAAAG	-11	NA	44647071	44652272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
transcript_120410.known	chr7	+	1641	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207555.2	1641	7	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	17.7458915433028	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCGTCTAGGCTGGTGG	NA	False	NA	16	True	AATAAA	-31	NA	44647112	44651825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
transcript_120412.known	chr7	+	1797	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207476.2	1797	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	53.8196577056707	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647103	44651814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44647491_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
transcript_120415.known	chr7	-	1596	8	FSM	ENSMUSG00000003190.13	ENSMUST00000208128.2	1596	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	69.0081332089167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44648136	44640645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44640879_44642167_44642456_44643234_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886_44647068_44648048
transcript_120416.known	chr7	-	1075	7	FSM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	18.8473399243029	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647003	44640645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44640879_44642167_44642456_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_120419.nic	chr7	+	2333	6	NIC	ENSMUSG00000003184.16	novel	1641	7	NA	NA	-13	0	intron_retention	TRUE	canonical	3	134	junction_1	18.4499322491981	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGCTGTCGACTGCGT	NA	False	NA	4	True	AATAAA	-19	NA	44647058	44651813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44651213_44651587
transcript_120423.nnic	chr7	-	965	6	NNC	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	64.0780773744032	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647034	44640645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_44640879_44642167_44642407_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_120424.nic	chr7	-	1014	6	NIC	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	59.7943141109587	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647034	44640645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44640879_44642167_44642456_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_120434.nnic	chr7	-	721	5	NIC	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-31	-5	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	66.4115953730973	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGCCCGAAAGTGTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	44647034	44640650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44640879_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_120435.nic	chr7	-	3538	5	NIC	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-31	-5	intron_retention	FALSE	canonical	3	154	junction_1	5.1234753829798	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGCCCGAAAGTGTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	44647034	44640650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_120439.known	chr7	-	949	4	FSM	ENSMUSG00000003190.13	ENSMUST00000207213.2	949	4	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAGCAAACAAAAGAAGAGG	NA	False	NA	NA	False	AAAACA	-5	NA	44646975	44643271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44643874_44645967_44646111_44646301_44646417_44646886
transcript_120441.known	chr7	+	704	2	FSM	ENSMUSG00000087138.2	ENSMUST00000152595.2	704	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGCTACAGACTGATTT	NA	False	NA	11	True	NA	NA	NA	44636396	44641752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44636795_44641446
transcript_120442.known	chr7	+	635	1	FSM	ENSMUSG00000003184.16	ENSMUST00000209006.2	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAACAAAAAAACAGA	NA	False	NA	NA	False	AATATA	-4	NA	44647110	44647745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44647100_44647700
transcript_120450.known	chr7	-	4293	11	FSM	ENSMUSG00000038406.18	ENSMUST00000085383.11	4293	11	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_10	46.9408137978029	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCGTAGTGGTGTACC	5054	False	NA	-6	True	ATTAAA	-17	NA	44665787	44652371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44665503
transcript_120455.known	chr7	+	995	6	FSM	ENSMUSG00000038387.10	ENSMUST00000044111.10	995	6	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_4	17.1860408471527	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGCTTTTTATTTGA	NA	False	NA	9	True	AATAAA	-17	NA	44667384	44671071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44667593_44669523_44669612_44669726_44669830_44669913_44670023_44670510_44670630_44670703
transcript_120461.nnic	chr7	+	2031	10	NNC	ENSMUSG00000003421.14	novel	1814	9	NA	NA	-50	21453	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	166.224079015179	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGCCAAACTACAGAAACAA	3008	False	NA	NA	False	NA	NA	NA	44711802	44749087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735_44727591_44748903
transcript_120464.known	chr7	+	1814	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTTTGTTGTTTTATT	3085	False	NA	25	True	NA	NA	NA	44711879	44727634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
transcript_120467.known	chr7	+	972	9	FSM	ENSMUSG00000003421.14	ENSMUST00000107829.9	972	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	164.802912595621	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCTGGCGCCTCATTG	3058	False	NA	27	True	AATAAA	-18	NA	44711852	44726840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44726050_44726164_44726244_44726354_44726735
transcript_120471.nic	chr7	+	2478	8	NIC	ENSMUSG00000003421.14	novel	1814	9	NA	NA	-50	0	intron_retention	FALSE	canonical	3	417	junction_1	68.1190434579982	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCTGGCGCCTCATTG	3008	False	NA	27	True	AATAAA	-18	NA	44711802	44726840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
transcript_120473.known	chr7	-	1623	8	FSM	ENSMUSG00000007837.12	ENSMUST00000210690.2	1623	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	11.5121940673747	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTTCTGGGCGCATT	NA	False	NA	-24	True	AATAAA	-44	NA	44712101	44703007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011_44711076_44711801
transcript_120477.known	chr7	-	922	7	FSM	ENSMUSG00000007837.12	ENSMUST00000210500.2	922	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.1539158303748	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGACCCCCCCCCACACT	NA	False	NA	NA	False	NA	NA	NA	44711082	44703388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709784_44710164_44710317_44711011
transcript_120478.known	chr7	-	1295	7	FSM	ENSMUSG00000007837.12	ENSMUST00000007981.9	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	9.01233722306385	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAATAAAAATGCAA	NA	False	NA	-53	True	AATAAA	-15	NA	44711076	44703036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011
transcript_120483.known	chr7	-	876	6	FSM	ENSMUSG00000007837.12	ENSMUST00000209920.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	10.7962956610126	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAACTCGGATCAGACGT	NA	False	NA	NA	False	NA	NA	NA	44711129	44703326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44710164_44710317_44711011
transcript_120484.nnic	chr7	-	1864	8	NNC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-2760	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	25.6515106767613	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	NA	False	NA	-7	True	CATAAA	-10	NA	44756035	44742487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063_44753189_44755780
transcript_120485.known	chr7	-	1462	7	FSM	ENSMUSG00000019539.12	ENSMUST00000019683.11	1462	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	35.1362427637839	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6660	False	NA	-4	True	AATAAA	-25	NA	44741645	44732336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741519
transcript_120486.known	chr7	-	1453	7	FSM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	48.2482008875864	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6660	False	NA	-4	True	AATAAA	-25	NA	44741645	44732336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741528
transcript_120487.nic	chr7	-	1391	7	NIC	ENSMUSG00000019539.12	novel	1453	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	63.9463751035889	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6667	False	NA	-4	True	AATAAA	-25	NA	44741638	44732336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741583
transcript_120489.known	chr7	-	1602	7	FSM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	28.0475786239502	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	871	False	NA	-7	True	CATAAA	-10	NA	44753169	44742487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751825_44752096_44752426_44752698_44753063
transcript_120498.known	chr7	-	595	2	FSM	ENSMUSG00000003420.9	ENSMUST00000211535.2	595	2	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTCGTCTCTGTGTCCGT	821	False	NA	NA	False	AATACA	-13	NA	44753219	44752258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44752698_44753063
transcript_120499.known	chr7	-	493	5	FSM	ENSMUSG00000003429.12	ENSMUST00000211725.2	493	5	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	12273.9079045755	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCTGGCCAATGCCCTA	NA	False	NA	-55	True	NA	NA	NA	44773759	44771856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44771973_44772252_44772383_44772586_44772663_44772842_44772975_44773720
transcript_120501.known	chr7	-	734	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	0	0	0	0	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGAAAATCTGCAAGTT	NA	False	NA	-52	True	NA	NA	NA	44778159	44775426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
transcript_120502.known	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000210967.2	658	8	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	5939.18297480076	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778144	44775345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_120511.known	chr7	-	562	7	FSM	ENSMUSG00000074129.15	ENSMUST00000210191.2	562	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7369.60067703053	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCCAATAAAGACTGTTT	NA	False	NA	3	True	NA	NA	NA	44778160	44775371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_120525.known	chr7	-	495	6	FSM	ENSMUSG00000074129.15	ENSMUST00000209711.2	495	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	7852.53911547087	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATAAAGACTGTTTGCC	NA	False	NA	6	True	NA	NA	NA	44778050	44775368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776632_44776699_44776919_44776993_44777965
transcript_120540.known	chr7	-	4074	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209581.2	4074	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_15	106.396938836369	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCCTGTGCTCTTCCTT	9380	False	NA	NA	False	NA	NA	NA	44803950	44790107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44798724_44799191_44803815
transcript_120541.known	chr7	-	3537	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_15	41.3256881370413	1846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGTTTTTGTTTTGG	9333	False	NA	NA	False	NA	NA	NA	44803997	44790328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
transcript_120550.nic	chr7	-	2519	16	NIC	ENSMUSG00000007833.16	novel	3537	17	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	27	junction_15	102.490454840113	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTGAGGATGTGGGAA	9316	False	NA	-10	True	AATAAA	-18	NA	44804014	44791260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44803815
transcript_120561.known	chr7	-	2685	16	FSM	ENSMUSG00000007833.16	ENSMUST00000107815.4	2685	16	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_14	34.1011567089577	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAAGGCAGTCTTCTTC	9322	False	NA	NA	False	NA	NA	NA	44804008	44791868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
transcript_120591.known	chr7	+	1077	10	FSM	ENSMUSG00000003423.16	ENSMUST00000210139.2	1077	10	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	50.5151242478703	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44803726	44809489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_120595.known	chr7	+	1185	10	FSM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	85.8518678298646	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCCAGACAATGATGCAT	NA	False	NA	20	True	AATAAA	-20	NA	44803737	44809488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_120598.known	chr7	+	1072	10	FSM	ENSMUSG00000003423.16	ENSMUST00000107811.4	1072	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	115.619106456406	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44805366	44809489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44805480_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_120604.known	chr7	-	771	2	FSM	ENSMUSG00000007833.16	ENSMUST00000209889.2	771	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCACCTGTAAGTTCAG	9340	False	NA	NA	False	NA	NA	NA	44803990	44798594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44799191_44803815
transcript_120605.known	chr7	+	2915	12	FSM	ENSMUSG00000070570.6	ENSMUST00000085374.7	2915	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	1.21287855128421	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTCGCGTGGTGTGGGC	39	False	NA	19	True	AATAAA	-20	NA	44813372	44825566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44813569_44818138_44818392_44819240_44819360_44819633_44819749_44819824_44819913_44820083_44820171_44820270_44820414_44821198_44821349_44821481_44821615_44822315_44822427_44822785_44822914_44824174
transcript_120608.nnic	chr7	-	2160	20	NNC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	251	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_11	15.2344557716802	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACAGGATGATTTCCTC	9329	False	NA	-4	True	NA	NA	NA	44854065	44833047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373_44839452_44842599_44842651_44842882_44843001_44843383_44843546_44843773_44843841_44844952_44845018_44845391_44845579_44845930_44846036_44849668_44849810_44853866
transcript_12061.known	chr10	+	5938	3	FSM	ENSMUSG00000035011.16	ENSMUST00000048128.15	5938	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	37	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGCCTGGTCTCTGT	NA	False	NA	22	True	CATAAA	-38	NA	80972104	80988056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80972534_80979795_80981052_80983803
transcript_12063.known	chr10	+	1841	3	FSM	ENSMUSG00000035011.16	ENSMUST00000119606.8	1841	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	36.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAACCAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	80972382	80984277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80972494_80979795_80981052_80983803
transcript_120637.known	chr7	-	748	5	FSM	ENSMUSG00000030792.9	ENSMUST00000209466.2	748	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	20.9090291501064	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTACATCCTCAGGCCA	8601	False	NA	-104	True	NA	NA	NA	44861247	44857048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44857323_44859536_44859627_44859754_44859896_44860824_44860995_44861174
transcript_120645.known	chr7	+	2140	12	FSM	ENSMUSG00000030796.18	ENSMUST00000033060.14	2140	12	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	60.1724793633042	1783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGGGGATTTATTTGA	5430	False	NA	NA	False	AATAAA	-38	NA	44865176	44883068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44865257_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
transcript_12065.known	chr10	+	1863	3	FSM	ENSMUSG00000035011.16	ENSMUST00000117956.2	1863	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	17.5	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAACAAAACAAAAAACTA	NA	False	NA	NA	False	NA	NA	NA	80973786	80984292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_80973905_80979795_80981052_80983803
transcript_120667.known	chr7	-	1268	9	FSM	ENSMUSG00000030798.16	ENSMUST00000033063.15	1268	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	25.228641957109	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTTTTTTTTTTTTTTT	4144	False	NA	-22	True	AATAAA	-16	NA	44888539	44883064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083_44888159_44888383
transcript_120670.known	chr7	-	1227	8	FSM	ENSMUSG00000030798.16	ENSMUST00000098461.10	1227	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	15.6426940630769	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTTTGGTAAAAA	4419	False	NA	-13	True	AATAAA	-25	NA	44888264	44883055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
transcript_120673.known	chr7	-	1428	7	FSM	ENSMUSG00000030798.16	ENSMUST00000211373.2	1428	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	11.4661337085446	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGTTGCGGAGCCTCCA	4385	False	NA	NA	False	NA	NA	NA	44888298	44883593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
transcript_120674.known	chr7	-	743	7	FSM	ENSMUSG00000030798.16	ENSMUST00000210078.2	743	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_6	30.7159929388946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAACAATATCATCTCCAT	4202	False	NA	NA	False	NA	NA	NA	44888481	44884161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888383
transcript_120677.known	chr7	-	2541	6	FSM	ENSMUSG00000030798.16	ENSMUST00000209779.2	2541	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	4.63033476111609	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTGGT	4444	False	NA	-18	True	AATAAA	-20	NA	44888239	44883060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
transcript_120685.known	chr7	-	960	2	FSM	ENSMUSG00000030798.16	ENSMUST00000210372.2	960	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAGAAAAAAGGAA	4463	False	NA	NA	False	NA	NA	NA	44888220	44887173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44887997_44888083
transcript_120686.known	chr7	+	3396	11	FSM	ENSMUSG00000030796.18	ENSMUST00000107801.10	3396	11	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_7	23.9883304963059	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	5529	False	NA	NA	False	AATAAA	-13	NA	44865275	44883043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
transcript_120687.known	chr7	+	1948	11	FSM	ENSMUSG00000030796.18	ENSMUST00000097216.5	1948	11	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	103.303436535287	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAAACCCAAAGGGGA	6888	False	NA	NA	False	AATAAA	-29	NA	44866634	44883059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44866770_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
transcript_120688.known	chr7	+	2865	13	FSM	ENSMUSG00000094152.6	ENSMUST00000213347.2	2865	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	6.56326053794064	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGAGGCTCGATTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	44890508	44922791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44890728_44906859_44906961_44908426_44908903_44909283_44909442_44909624_44909752_44909899_44910076_44910240_44910352_44910496_44910739_44917438_44917623_44917871_44918074_44918196_44918357_44921914_44922078_44922245
transcript_12069.nnic	chr10	+	2052	3	NNC	ENSMUSG00000035011.16	novel	907	2	NA	NA	3994	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	40	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAACAAAACAAAAAACTA	NA	False	NA	NA	False	NA	NA	NA	80977780	80984292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_80978088_80979795_80981052_80983803
transcript_120692.known	chr7	-	4234	25	FSM	ENSMUSG00000038260.11	ENSMUST00000042194.10	4234	25	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_19	18.3832181168949	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGGGTGGGCGCTGCTG	3201	False	NA	NA	False	NA	NA	NA	44983193	44952578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371_44954505_44954712_44954919_44957667_44957846_44957967_44958143_44958521_44958655_44959700_44960124_44964018_44964097_44964404_44964518_44966198_44966345_44966429_44966560_44967459_44967595_44967762_44968105_44968665_44968779_44971211_44971312_44971422_44971615_44971744_44971807_44975986_44976171_44976400_44976565_44976695_44976877_44977144_44977320_44982805_44982877_44983110
transcript_12071.nnic	chr10	+	2063	3	NNC	ENSMUSG00000035011.16	novel	907	2	NA	NA	4016	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	41.5	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAACAAAACAAAAAACTA	NA	False	NA	NA	False	NA	NA	NA	80977802	80984292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_80978121_80979795_80981052_80983803
transcript_120716.known	chr7	+	653	1	FSM	ENSMUSG00000046721.12	ENSMUST00000026901.12	653	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5003	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTACACAGAATAATAAAAGT	NA	False	NA	NA	False	AAGAAA	-9	NA	44974388	44975041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44974400_44975000
transcript_120717.known	chr7	+	2411	6	FSM	ENSMUSG00000038239.12	ENSMUST00000085351.7	2411	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.87054001888146	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCCCGAGTGGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	44984713	44988398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_44986799_44986884_44986956_44987310_44987380_44987577_44987633_44988112_44988150_44988304
transcript_120722.nic	chr7	-	3422	20	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	11247	0	4646	0	3prime_fragment	FALSE	canonical	0	0	junction_8	20.0009695055873	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAGCTTTTGTTCTTAA	9452	False	NA	-2	True	NA	NA	NA	45004891	44988549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976_44993004_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510_45001699_45002942_45003088_45004120_45004201_45004290_45004354_45004582
transcript_120725.nic	chr7	-	3273	20	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	11247	149	4646	0	3prime_fragment	FALSE	canonical	0	0	junction_8	20.0009695055873	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGGTGACCAGCCT	9452	False	NA	-2	True	NA	NA	NA	45004891	44988698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976_44993004_44993164_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510_45001699_45002942_45003088_45004120_45004201_45004290_45004354_45004582
transcript_120729.nic	chr7	-	1824	8	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	22993	0	-2561	0	3prime_fragment	FALSE	canonical	3	8	junction_7	19.3422451897289	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAGCTTTTGTTCTTAA	4425	False	NA	-2	True	NA	NA	NA	44993145	44988549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
transcript_120734.nnic	chr7	-	1599	7	NNC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	-1087	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAGCTTTTGTTCTTAA	5899	False	NA	-2	True	NA	NA	NA	44991671	44988549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
transcript_120737.nnic	chr7	-	1450	7	NNC	ENSMUSG00000003863.19	novel	3899	26	NA	NA	-1087	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGGTGACCAGCCT	5899	False	NA	-2	True	NA	NA	NA	44991671	44988698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
transcript_120739.known	chr7	-	735	6	FSM	ENSMUSG00000003872.10	ENSMUST00000003971.10	735	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.93907194296653	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	7942	False	NA	1	True	TTTAAA	-16	NA	45020007	45017314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45017423_45017727_45017892_45018564_45018775_45019338_45019411_45019550_45019670_45019945
transcript_120742.known	chr7	+	714	3	FSM	ENSMUSG00000091510.5	ENSMUST00000058665.10	714	3	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGAAGGAGGGTCCTGGT	59	False	NA	NA	False	AATAAA	-17	NA	45016656	45017372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45016785_45016785_45016957_45016957
transcript_120751.known	chr7	-	3035	11	FSM	ENSMUSG00000063511.12	ENSMUST00000211290.2	3035	11	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	571.982875617793	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9091	False	NA	-10	True	AATAAA	-15	NA	45045116	45025886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45031248_45032609_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
transcript_120753.nic	chr7	-	1814	11	NIC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_10	573.136842298591	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9032	False	NA	-10	True	AATAAA	-15	NA	45045175	45025886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044516_45044597_45044932
transcript_120762.known	chr7	-	1735	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGTCTTACTGCACT	9041	False	NA	0	True	AATAAA	-25	NA	45045166	45025876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
transcript_120765.known	chr7	-	4008	10	FSM	ENSMUSG00000063511.12	ENSMUST00000211366.2	4008	10	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	443.86935014709	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTGGGCATGTGATGTCT	9125	False	NA	-9	True	AATAAA	-16	NA	45045082	45025885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45026703_45026779_45026868_45030140_45032609_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
transcript_120774.nic	chr7	-	2614	8	ISM	ENSMUSG00000063511.12	ENSMUST00000211290.2	3035	11	-72	4849	-22	41	5prime_fragment	FALSE	canonical	3	95	junction_1	496.126136035124	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTGGTGTGGTCTGGAT	9019	False	NA	NA	False	NA	NA	NA	45045188	45030735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_45032609_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
transcript_120777.nic	chr7	-	3215	7	ISM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	-4	4859	-4	41	5prime_fragment	FALSE	canonical	3	1192	junction_6	158.331666657895	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTGGTGTGGTCTGGAT	9037	False	NA	NA	False	NA	NA	NA	45045170	45030735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
transcript_120780.known	chr7	-	579	4	FSM	ENSMUSG00000063511.12	ENSMUST00000210808.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_3	155.137215250099	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCTGTGATTGGGCAGT	9226	False	NA	NA	False	NA	NA	NA	45044981	45041247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45041558_45041686_45041750_45044082_45044240_45044932
transcript_120782.known	chr7	-	2922	1	FSM	ENSMUSG00000063511.12	ENSMUST00000211178.2	2922	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAACACACAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	45033698	45030776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45030800_45033700
transcript_120783.known	chr7	+	2182	2	FSM	ENSMUSG00000038201.11	ENSMUST00000107774.3	2182	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACTGGGGTCTCCAGGGA	NA	False	NA	NA	False	NA	NA	NA	45055076	45059187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45056440_45058368
transcript_120784.known	chr7	+	1963	3	FSM	ENSMUSG00000074121.4	ENSMUST00000058879.8	1963	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGGCTCCGCCTTGAA	637	False	NA	NA	False	NA	NA	NA	45063118	45066603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45063213_45064154_45064279_45064858
transcript_12079.known	chr10	-	2571	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGGTTTCTCTGTAG	NA	False	NA	2	True	AATAAA	-37	NA	81003757	80989099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
transcript_120790.known	chr7	+	3678	16	FSM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_1	61.1041369757855	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTGGACATAAGCTC	1027	False	NA	25	True	AATACA	-21	NA	45084267	45106043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
transcript_120793.nic	chr7	-	1669	16	NIC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_15	624.837258812245	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	9084	False	NA	-4	True	TATAAA	-15	NA	45084145	45071321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675_45083781_45084043
transcript_120808.known	chr7	-	1834	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	0	0	0	0	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	2124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	9182	False	NA	-4	True	TATAAA	-15	NA	45084047	45071321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
transcript_120809.known	chr7	+	2501	5	FSM	ENSMUSG00000118462.2	ENSMUST00000238581.2	2501	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCATGTTCTTTAGTAG	5295	False	NA	NA	False	AATAAA	-15	NA	45067776	45071278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45067950_45068137_45068309_45068402_45068568_45069133_45070807_45070959
transcript_120811.known	chr7	-	968	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	0	0	0	0	multi-exon	TRUE	canonical	3	56898	junction_1	7359.57672393974	6787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109308	45107367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
transcript_120812.known	chr7	-	943	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210106.2	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	31741.9424561398	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45109263	45107368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45107708_45107958_45108106_45108507_45108655_45108953
transcript_120816.known	chr7	-	825	3	FSM	ENSMUSG00000050708.17	ENSMUST00000211500.2	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	6244.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCTTTTTGAGACAGC	NA	False	NA	-40	True	AGTAAA	-2	NA	45108887	45107388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45107708_45107958_45108085_45108507
transcript_120817.known	chr7	-	710	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210375.2	710	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	30194.0672355054	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45108845	45107368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108747
transcript_120821.known	chr7	-	2111	13	FSM	ENSMUSG00000030824.18	ENSMUST00000033096.16	2111	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	147.246014848922	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	False	NA	-4	True	AATAAA	-19	NA	45159750	45142531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45143374_45143540_45143626_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
transcript_120844.known	chr7	+	1675	10	FSM	ENSMUSG00000023467.19	ENSMUST00000107759.10	1675	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	26.5581123827228	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGTTCTGTGCGTTTG	6642	False	NA	15	True	AATAAA	-16	NA	45135686	45171804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45135908_45165662_45165801_45165939_45166111_45167203_45167392_45168009_45168310_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
transcript_120850.known	chr7	-	5323	7	FSM	ENSMUSG00000011382.9	ENSMUST00000011526.7	5323	7	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_4	6.73300329224139	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTTCCAATTCAGTGTT	NA	False	NA	-9	True	ACTAAA	-4	NA	45138229	45120410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
transcript_120856.known	chr7	-	801	6	FSM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	1143.13684220219	790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9977	False	NA	-2	True	AATAAA	-22	NA	45116260	45111120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
transcript_120859.nnic	chr7	-	815	5	NIC	ENSMUSG00000003873.12	novel	867	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	105	junction_4	1322.49735349452	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9915	False	NA	-2	True	AATAAA	-22	NA	45116322	45111120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45116165
transcript_120867.known	chr7	-	2742	2	FSM	ENSMUSG00000030824.18	ENSMUST00000210208.2	2742	2	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATTAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	45159809	45156592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45159272_45159746
transcript_120868.known	chr7	-	2333	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_2	34	629	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	3861	False	NA	44	True	AATAAA	-24	NA	45175692	45172340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45172747_45173162_45174816_45175418
transcript_120869.known	chr7	+	2660	20	FSM	ENSMUSG00000040428.20	ENSMUST00000051810.15	2660	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	4.51712653497375	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTTGTGACATTGTGTT	156	False	NA	8	True	AATAAA	-17	NA	45175753	45203653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45175866_45179992_45180083_45181681_45181790_45183761_45183835_45183930_45184032_45184167_45184278_45187080_45187297_45187621_45187902_45188629_45188714_45189903_45189952_45190254_45190336_45190478_45190629_45193369_45193469_45197373_45197515_45198483_45198584_45198653_45198731_45199227_45199390_45202668_45202719_45202992_45203106_45203188
transcript_120878.known	chr7	+	1400	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	205.455591308682	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGAGTGGTCGTGTCCT	NA	False	NA	10	True	NA	NA	NA	45204316	45216745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
transcript_120881.known	chr7	+	1315	9	FSM	ENSMUSG00000030825.20	ENSMUST00000210997.2	1315	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	257.274385384554	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTTGGAGTGGTCGTGT	NA	False	NA	7	True	NA	NA	NA	45205467	45216742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45205518_45205736_45205820_45207031_45207099_45208449_45208531_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
transcript_120882.nic	chr7	+	1308	5	ISM	ENSMUSG00000030825.20	ENSMUST00000210997.2	1315	9	3063	0	-99	0	3prime_fragment	FALSE	canonical	3	557	junction_3	22.2864869371554	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTTGGAGTGGTCGTGT	NA	False	NA	7	True	NA	NA	NA	45208530	45216742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
transcript_120887.known	chr7	+	1536	11	FSM	ENSMUSG00000030826.20	ENSMUST00000120864.10	1536	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	130.825991301423	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCTATCATGCTCTAA	2475	False	NA	NA	False	AATAAA	-17	NA	45219796	45239134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45219824_45224854_45224930_45225222_45225427_45234340_45234452_45234549_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
transcript_120899.known	chr7	+	1905	6	FSM	ENSMUSG00000030826.20	ENSMUST00000209569.2	1905	6	0	0	0	0	multi-exon	TRUE	canonical	3	349	junction_4	36.7009536660834	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAGAAAAATGCGGC	2452	False	NA	NA	False	NA	NA	NA	45219773	45236182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45219824_45224854_45224930_45225222_45225427_45234340_45234452_45234534_45234655_45234837
transcript_120903.known	chr7	-	951	3	FSM	ENSMUSG00000030827.6	ENSMUST00000033099.6	951	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACTGAGATATGTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	45264914	45263309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45263735_45264289_45264394_45264492
transcript_120904.known	chr7	+	1493	10	FSM	ENSMUSG00000064158.7	ENSMUST00000033100.5	1493	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	3.72512324760894	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGACTTCTGGCTCCAA	NA	False	NA	NA	False	AATAAA	-31	NA	45271234	45276666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45271425_45272145_45272456_45272717_45272793_45273558_45273646_45274085_45274107_45274352_45274434_45274545_45274647_45274965_45275120_45275446_45275706_45276451
transcript_120908.known	chr7	-	1542	2	FSM	ENSMUSG00000110357.2	ENSMUST00000211533.2	1542	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAGGACCAAG	NA	False	NA	NA	False	NA	NA	NA	45288189	45285103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45286563_45288106
transcript_120909.known	chr7	+	3202	12	FSM	ENSMUSG00000044562.13	ENSMUST00000057927.10	3202	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	31.446399365553	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTTGTCAAGATTTGGG	NA	False	NA	6	True	AATAAA	-19	NA	45276911	45288517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45277015_45277189_45277331_45277837_45278506_45279563_45279920_45281659_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143_45286317_45287293_45287442_45288108
transcript_120910.nnic	chr7	+	1241	4	NNC	ENSMUSG00000042918.18	novel	536	2	NA	NA	-498	-158	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	1.4142135623731	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACCCAGTTCTCATGTC	NA	False	NA	NA	False	NA	NA	NA	45293309	45295007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_45293393_45293627_45293853_45293942_45293998_45294129
transcript_120913.nic	chr7	+	1403	3	ISM	ENSMUSG00000042918.18	ENSMUST00000210213.2	2486	9	3982	185	-425	-158	3prime_fragment	FALSE	canonical	3	12	junction_1	0	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACCCAGTTCTCATGTC	NA	False	NA	NA	False	NA	NA	NA	45293382	45295007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_45293853_45293942_45293998_45294129
transcript_120915.known	chr7	-	2955	2	FSM	ENSMUSG00000055978.6	ENSMUST00000069800.6	2955	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATGGTTTTTGTTTGCT	9515	False	NA	NA	False	AATAAA	-21	NA	45315818	45298014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45300773_45315621
transcript_120924.known	chr7	-	2470	4	FSM	ENSMUSG00000040364.9	ENSMUST00000040636.9	2470	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	5.43650214343336	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTACCCAGCAATTGAGT	NA	False	NA	NA	False	AATAAA	-21	NA	45343826	45327109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45328949_45333603_45333716_45334689_45334780_45343397
transcript_120927.nnic	chr7	-	2382	3	NIC	ENSMUSG00000040364.9	novel	2470	4	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	6.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTACCCAGCAATTGAGT	NA	False	NA	NA	False	AATAAA	-21	NA	45343828	45327109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_45328949_45333603_45333716_45343397
transcript_120928.nnic	chr7	-	1885	3	NIC	ENSMUSG00000040364.9	novel	2470	4	NA	NA	-2	-497	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	6.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTGGGGAGCAAAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	45343828	45327606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_45328949_45333603_45333716_45343397
transcript_120929.nic	chr7	+	1180	7	ISM	ENSMUSG00000003273.15	ENSMUST00000003360.10	1585	9	1141	73	-32	0	3prime_fragment	FALSE	canonical	3	16	junction_2	3.86221007541882	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350407	45354033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_45350791_45351857_45352044_45352256_45352353_45352485_45352559_45352882_45353038_45353136_45353303_45353912
transcript_120931.nic	chr7	+	1313	6	NIC	ENSMUSG00000003273.15	novel	1585	9	NA	NA	-32	0	intron_retention	FALSE	canonical	3	16	junction_2	4.16653333119993	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350407	45354033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_45350791_45351857_45352044_45352256_45352559_45352882_45353038_45353136_45353303_45353912
transcript_120934.known	chr7	+	706	5	FSM	ENSMUSG00000003273.15	ENSMUST00000211259.2	706	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	4.27200187265877	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTGAGCCTGGAGCTCC	NA	False	NA	NA	False	NA	NA	NA	45350458	45352901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45350791_45351857_45352044_45352256_45352353_45352485_45352559_45352882
transcript_120942.known	chr7	-	3548	7	FSM	ENSMUSG00000057342.16	ENSMUST00000107737.11	3548	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_6	23.5141801189552	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAAAGCTGGTCTTCAA	3162	False	NA	NA	False	AATAAA	-20	NA	45367426	45358890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45366416_45366488_45367124
transcript_120946.known	chr7	+	1027	6	FSM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	3241.25016621673	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	6008	False	NA	9	True	AATAAA	-16	NA	45367580	45370252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45368005_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
transcript_120949.known	chr7	-	2968	6	FSM	ENSMUSG00000057342.16	ENSMUST00000072836.7	2968	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	32.4678302324008	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCCTTCACCCCTTCCAC	5957	False	NA	-24	True	AATAAA	-17	NA	45364631	45359708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45364020
transcript_120950.known	chr7	-	2577	6	FSM	ENSMUSG00000057342.16	ENSMUST00000210060.2	2577	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	47.003829631212	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGACATCCCTTTCAGTT	3262	False	NA	-6	True	AATAAA	-35	NA	45367326	45359690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45367124
transcript_120957.known	chr7	+	1837	4	FSM	ENSMUSG00000059824.13	ENSMUST00000080885.12	1837	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	14.613540144522	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCAAGCTGGGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	45354511	45359627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45355187_45356029_45356441_45357683_45357896_45359088
transcript_120962.known	chr7	+	1156	3	FSM	ENSMUSG00000059824.13	ENSMUST00000211513.2	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	20	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATCAACACAATCCTGA	NA	False	NA	NA	False	NA	NA	NA	45354692	45359538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45355187_45357683_45357896_45359088
transcript_120964.known	chr7	+	2989	7	FSM	ENSMUSG00000059070.17	ENSMUST00000210640.2	2989	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3043.96656884109	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTTCATTCATGAAG	3308	False	NA	17	True	AATAAA	-24	NA	45364880	45370260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45365267_45365571_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
transcript_120965.known	chr7	+	679	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	7330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGTGTTCATTCATGAA	5922	False	NA	16	True	AATAAA	-23	NA	45367494	45370259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
transcript_120968.known	chr7	-	1510	13	FSM	ENSMUSG00000003269.18	ENSMUST00000210853.3	1510	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	169.916809710582	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGACTCCTTATTTGT	3191	False	NA	NA	False	GGGGCT	-40	NA	45463706	45457072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457903_45458153_45458157_45459550_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
transcript_120971.known	chr7	-	1512	12	FSM	ENSMUSG00000003269.18	ENSMUST00000209245.2	1512	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	132.007888569692	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATTTGTAATTAACATG	3171	False	NA	NA	False	NA	NA	NA	45463726	45457062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459546_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
transcript_120983.known	chr7	-	2681	3	FSM	ENSMUSG00000058743.7	ENSMUST00000071937.7	2681	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTTCTGTAGTAAGAT	861	False	NA	NA	False	TATAAA	-20	NA	45474206	45465883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45467637_45468795_45469558_45474040
transcript_120984.known	chr7	-	1974	8	FSM	ENSMUSG00000053801.19	ENSMUST00000131384.3	1974	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	174.077744770806	867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTCTGAGCTTCTTTGCT	8479	False	NA	0	True	AATAAA	-35	NA	45480368	45474646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018_45480214_45480296
transcript_120985.known	chr7	-	1898	7	FSM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_1	34.207292919623	1292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCCTCTGAGCTTCTT	8634	False	NA	-4	True	AATAAA	-31	NA	45480213	45474650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
transcript_120987.known	chr7	-	1783	6	FSM	ENSMUSG00000053801.19	ENSMUST00000209484.2	1783	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	183.663387750526	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACAAGTCCTCTGAGCTT	8628	False	NA	-7	True	AATAAA	-28	NA	45480219	45474653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45480018
transcript_120990.known	chr7	+	1350	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211716.2	1350	5	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_4	97.5256376549264	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTCCCTGCCC	3997	False	NA	14	True	AATAAA	-18	NA	45522248	45533153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45530984_45532400
transcript_120991.known	chr7	+	1599	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	0	0	0	0	multi-exon	TRUE	canonical	3	208	junction_1	16.5378354085412	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTGTTCCCTGCCCGCT	3944	False	NA	17	True	AATAAA	-21	NA	45522195	45533156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
transcript_120995.known	chr7	+	832	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211234.2	832	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	102.020524895729	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTTTTTGATTCTGATG	4299	False	NA	15	True	AAGAAA	-25	NA	45522550	45532671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45522599_45523182_45523284_45523466_45523626_45530923_45531177_45532400
transcript_120998.known	chr7	-	967	5	FSM	ENSMUSG00000040231.17	ENSMUST00000039049.16	967	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	22.466641938661	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTCCTGTCTGTTCCTC	NA	False	NA	-3	True	AGTAAA	-29	NA	45546138	45536268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45536550_45536790_45536931_45538035_45538274_45545114_45545316_45546031
transcript_120999.known	chr7	-	722	4	FSM	ENSMUSG00000040231.17	ENSMUST00000120299.4	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	18.0616229121921	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGCTAAACAGCCTGT	NA	False	NA	-64	True	NA	NA	NA	45546094	45536329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45536550_45538035_45538274_45545114_45545316_45546031
transcript_121.known	SIRV4	-	592	4	FSM	SIRV4A	SIRV404	592	4	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	14623	8322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
transcript_1210.known	chr1	-	4451	20	FSM	ENSMUSG00000003134.11	ENSMUST00000054462.11	4451	20	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_12	7.9882184715386	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCACGTATTTCTAATT	NA	False	NA	NA	False	AATAAA	-20	NA	39517836	39410572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_39411868_39412807_39412906_39413162_39413253_39415504_39415571_39415958_39416200_39418535_39418605_39419075_39419175_39419308_39419439_39420357_39420644_39424201_39424320_39425078_39425294_39428388_39428540_39430197_39430369_39431137_39431336_39433145_39433354_39441763_39442005_39444371_39444601_39445832_39445952_39465148_39465260_39517520
transcript_121002.known	chr7	+	2297	8	FSM	ENSMUSG00000002781.20	ENSMUST00000069772.16	2297	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	17.4414472344658	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5492	False	NA	7	True	AATAAA	-14	NA	45546364	45566837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
transcript_121008.known	chr7	+	2026	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209292.2	2026	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	23.5401548187111	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5632	False	NA	7	True	AATAAA	-14	NA	45546504	45566837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45558745_45559026_45565506_45565697_45565834
transcript_121011.known	chr7	+	2466	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209350.2	2466	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	6.94422221866655	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTCTGGAGTAGTGTGG	5652	False	NA	3	True	AATAAA	-10	NA	45546524	45566833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
transcript_121012.known	chr7	+	2766	2	FSM	ENSMUSG00000002781.20	ENSMUST00000210044.2	2766	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAGAAAAAAAAA	5971	False	NA	NA	False	GGGGCT	-42	NA	45546843	45551574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45547091_45549055
transcript_121013.known	chr7	-	736	5	FSM	ENSMUSG00000040212.13	ENSMUST00000038876.13	736	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	7.77817459305202	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCGGCTCCTCTTCCTTC	4358	False	NA	NA	False	AATAAA	-20	NA	45570828	45567446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570665
transcript_121014.known	chr7	-	784	5	FSM	ENSMUSG00000040212.13	ENSMUST00000164119.3	784	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	25.7730479377197	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGACTCGGCTCCTCTT	4911	False	NA	NA	False	AATAAA	-15	NA	45570275	45567451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570059
transcript_121015.known	chr7	+	2598	15	FSM	ENSMUSG00000040189.19	ENSMUST00000210039.3	2598	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	4.94923205752	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTCCTACAAGTGTG	3132	False	NA	12	True	AATAAA	-23	NA	45573638	45598387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45591618_45592001_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
transcript_121022.known	chr7	+	1078	5	FSM	ENSMUSG00000040189.19	ENSMUST00000211367.2	1078	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	8.39642781187333	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTTTGGTCATGGTG	3160	False	NA	NA	False	NA	NA	NA	45573666	45581037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45580485
transcript_121024.known	chr7	-	257	2	FSM	ENSMUSG00000030834.8	ENSMUST00000210962.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTCCTCATCCTAAAAC	NA	False	NA	NA	False	ATTAAA	-19	NA	45622743	45616982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45617145_45622648
transcript_121025.known	chr7	+	4257	31	FSM	ENSMUSG00000030835.7	ENSMUST00000033121.7	4257	31	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_14	37.3234510730184	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATAGTGTGGGGTGCATAC	8093	False	NA	29	True	AATAAA	-29	NA	45683121	45733636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_45683397_45686982_45687073_45687966_45688013_45690892_45690994_45691955_45692063_45693654_45693728_45694684_45694838_45695272_45695411_45696332_45696423_45699693_45699800_45699969_45700121_45703925_45704101_45706018_45706161_45706500_45706633_45707839_45707977_45710302_45710391_45711192_45711257_45712390_45712487_45715585_45715805_45715883_45715967_45717802_45717963_45718095_45718223_45719346_45719461_45720198_45720327_45721921_45722064_45725498_45725583_45727449_45727561_45728914_45729017_45730818_45730939_45732658_45732752_45733026
transcript_121027.nic	chr7	+	2273	16	ISM	ENSMUSG00000030835.7	ENSMUST00000033121.7	4257	31	-5	22982	-5	0	5prime_fragment	FALSE	canonical	3	214	junction_14	26.7971806145514	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAACAACAAAA	8088	False	NA	NA	False	NA	NA	NA	45683116	45710654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_45683397_45686982_45687073_45687966_45688013_45690892_45690994_45691955_45692063_45693654_45693728_45694684_45694838_45695272_45695411_45696332_45696423_45699693_45699800_45699969_45700121_45703925_45704101_45706018_45706161_45706500_45706633_45707839_45707977_45710302
transcript_121031.known	chr7	-	4877	39	FSM	ENSMUSG00000040136.11	ENSMUST00000033123.8	4877	39	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	1.4783759900198	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGTGTTTCGTACTGTAA	1355	False	NA	NA	False	NA	NA	NA	45829441	45754005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_45754186_45754887_45754951_45755232_45755367_45756008_45756113_45756375_45756485_45756661_45756741_45757507_45757639_45757738_45757860_45758176_45758291_45758964_45759068_45762488_45762582_45764365_45764524_45765197_45765268_45766329_45766497_45766595_45766838_45767393_45767494_45768379_45768506_45769798_45769937_45771532_45771614_45772281_45772367_45773316_45773416_45774266_45774306_45776190_45776242_45784904_45785011_45785585_45785662_45786031_45786149_45786287_45786394_45787382_45787529_45788888_45788930_45800150_45800314_45800959_45801095_45803840_45803997_45806530_45806696_45815342_45815532_45816316_45816560_45819247_45819415_45824783_45824906_45827865_45828008_45829225
transcript_121034.known	chr7	+	7760	2	FSM	ENSMUSG00000058975.8	ENSMUST00000025202.8	7760	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTGACTGCCTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	46045920	46082778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_46047672_46076769
transcript_121036.known	chr7	-	1465	11	FSM	ENSMUSG00000030839.13	ENSMUST00000033127.12	1465	11	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_10	7.18609768928867	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGGCAGATTATGGG	NA	False	NA	-10	True	AATAAA	-35	NA	46289231	46092577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
transcript_121039.known	chr7	-	2551	12	FSM	ENSMUSG00000030839.13	ENSMUST00000216505.2	2551	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	34.2472777466743	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATTCCCTGGAGAACCC	NA	False	NA	-27	True	AATAAA	-18	NA	46289228	46092594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46092960_46161378_46162485_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
transcript_121045.known	chr7	-	4728	12	FSM	ENSMUSG00000006763.15	ENSMUST00000143082.4	4728	12	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_6	40.4362573576105	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-5	NA	46360104	46335531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
transcript_121050.known	chr7	-	2228	10	FSM	ENSMUSG00000006763.15	ENSMUST00000210628.2	2228	10	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_4	42.8860102660904	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTTTGTATTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	46360082	46341239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
transcript_121051.known	chr7	-	494	3	FSM	ENSMUSG00000040026.9	ENSMUST00000211660.2	494	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTCGCTGTCACTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	46363173	46361422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46361689_46362012_46362152_46363084
transcript_121052.known	chr7	-	555	4	FSM	ENSMUSG00000040026.9	ENSMUST00000006956.9	555	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	7.31816613336672	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCGCTGTCACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	46365124	46361421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46361689_46362012_46362152_46364433_46364529_46365070
transcript_121053.known	chr7	+	652	4	FSM	ENSMUSG00000057465.6	ENSMUST00000210769.2	652	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCCTGCGTATCTGTC	3403	False	NA	NA	False	AATAAA	-19	NA	46401213	46403737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_46401289_46401710_46401806_46402841_46402981_46403394
transcript_121058.known	chr7	-	4702	23	FSM	ENSMUSG00000014418.17	ENSMUST00000107653.8	4702	23	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	16.3614266184748	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGAACATGGATATGAGAT	NA	False	NA	-4	True	AATAAA	-20	NA	46445305	46409895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427525_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440497_46444851
transcript_12106.known	chr10	-	1178	2	FSM	ENSMUSG00000004934.15	ENSMUST00000129549.2	1178	2	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	81003548	80998876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81000025_81003518
transcript_121060.nic	chr7	-	4975	23	NIC	ENSMUSG00000014418.17	novel	4953	23	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_22	12.4724489764871	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACATGGATATGAGATTT	NA	False	NA	-2	True	AATAAA	-22	NA	46445501	46409893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440473_46444851
transcript_121061.known	chr7	-	4422	23	FSM	ENSMUSG00000014418.17	ENSMUST00000107654.8	4422	23	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_22	14.2782270816457	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGATATGAGATTTACTT	NA	False	NA	2	True	AATAAA	-26	NA	46445423	46409889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440473_46445330
transcript_121062.known	chr7	-	4953	23	FSM	ENSMUSG00000014418.17	ENSMUST00000014562.14	4953	23	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_22	12.9471270625399	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGATATGAGATTTACTT	NA	False	NA	2	True	AATAAA	-26	NA	46445451	46409889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440497_46444851
transcript_121076.nic	chr7	+	3095	16	NIC	ENSMUSG00000006599.14	novel	2736	15	NA	NA	-290	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	187.878920821067	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4416	False	NA	4	True	AATAAA	-15	NA	46445236	46473224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_46445713_46446820_46446890_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
transcript_121077.known	chr7	+	2736	15	FSM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_5	47.1406925910002	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4706	False	NA	4	True	AATAAA	-15	NA	46445526	46473224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
transcript_121105.known	chr7	+	1588	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	0	0	0	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	4569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495262	46505051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
transcript_121109.known	chr7	+	1766	8	FSM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	2898.88755580904	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	18	True	AATAAA	-14	NA	46496554	46505050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_46496813_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
transcript_121111.known	chr7	+	1277	7	FSM	ENSMUSG00000063229.16	ENSMUST00000209548.2	1277	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3021.28082202823	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCGTATAACCTGGCTCC	NA	False	NA	NA	False	NA	NA	NA	46495266	46504862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46503406_46503531_46504400
transcript_121120.known	chr7	+	1370	8	FSM	ENSMUSG00000030851.16	ENSMUST00000014545.11	1370	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.73619909446343	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCTGCCTTTTATAA	NA	False	NA	NA	False	NA	NA	NA	46510626	46527566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_46510726_46511186_46511320_46515832_46515951_46519022_46519197_46522335_46522510_46525099_46525218_46525897_46526022_46527136
transcript_121125.nic	chr7	-	1461	10	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	-17	209	combination_of_known_junctions	FALSE	canonical	3	163	junction_7	331.9070969227	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTTTCTCTTTCTTGGA	NA	False	NA	-37	True	AATAAA	-11	NA	46569734	46539124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558740_46560492_46560559_46563125_46563211_46569568
transcript_121126.known	chr7	-	1949	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTACTCTTTGCAAACG	NA	False	NA	NA	False	AATAAA	-30	NA	46569717	46538696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
transcript_121134.nnic	chr7	-	3410	13	NNC	ENSMUSG00000043262.17	novel	4616	12	NA	NA	-6	782	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.1773157377834	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGAGACATAAGGCATTC	NA	False	NA	NA	False	NA	NA	NA	46608226	46572181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_46572335_46574273_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
transcript_121135.known	chr7	-	4616	12	FSM	ENSMUSG00000043262.17	ENSMUST00000094398.13	4616	12	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_10	11.9551503476414	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCTGCTGTCTGATTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	46608275	46572963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
transcript_121147.known	chr7	-	801	5	FSM	ENSMUSG00000043262.17	ENSMUST00000208388.2	801	5	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_3	8.74642784226795	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTTATCATTACATGT	NA	False	NA	NA	False	TATAAA	-12	NA	46608220	46597392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
transcript_121148.known	chr7	-	5223	6	FSM	ENSMUSG00000049516.10	ENSMUST00000061639.10	5223	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	5.03587132480567	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTACTGGTTTTCATTTA	9272	False	NA	-5	True	ATTAAA	-15	NA	46658159	46640143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_46643135_46644312_46644391_46645764_46645934_46647219_46648753_46649518_46649634_46657822
transcript_121155.known	chr7	+	334	2	FSM	ENSMUSG00000109118.2	ENSMUST00000208046.2	334	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTATACCTGAGTCTGG	NA	False	NA	NA	False	AATAAA	-15	NA	46658292	46658756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_46658342_46658471
transcript_121156.nic	chr7	-	489	2	ISM	ENSMUSG00000049516.10	ENSMUST00000061639.10	5223	6	-37	9375	-37	6739	5prime_fragment	FALSE	canonical	3	26	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCGCTTGTACTGCATC	9235	False	NA	NA	False	AAAAAG	-1	NA	46658196	46649518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_46649634_46657822
transcript_121157.known	chr7	+	1831	3	FSM	ENSMUSG00000010307.8	ENSMUST00000010451.8	1831	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	1	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTCCTGACTTGTCTG	NA	False	NA	NA	False	AATAAA	-24	NA	46700348	46704525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_46700550_46702597_46702863_46703160
transcript_121159.known	chr7	+	2410	17	FSM	ENSMUSG00000030471.18	ENSMUST00000118927.8	2410	17	0	0	0	0	multi-exon	TRUE	canonical	3	240	junction_5	25.4348893009189	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTAATGCTTC	NA	False	NA	9	True	AATAAA	-20	NA	48438750	48477188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
transcript_121168.known	chr7	-	3691	13	FSM	ENSMUSG00000046179.18	ENSMUST00000058745.15	3691	13	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_12	14.9024606469312	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACATTTTCATTTGGCC	NA	False	NA	-1	True	ATTAAA	-17	NA	48530789	48516176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_48516978_48517401_48517788_48517906_48518040_48520438_48520965_48521560_48521649_48521833_48522035_48523007_48523146_48524719_48524882_48525204_48525520_48527689_48527847_48528172_48528452_48530025_48530150_48530408
transcript_121169.known	chr7	-	3499	13	FSM	ENSMUSG00000046179.18	ENSMUST00000119223.2	3499	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_12	21.1073644336126	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACATTTTCATTTGGCC	NA	False	NA	-1	True	ATTAAA	-17	NA	48531344	48516176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_48516978_48517401_48517788_48517906_48518040_48520438_48520965_48521560_48521649_48521833_48522035_48523007_48523146_48524719_48524882_48525204_48525520_48527689_48527847_48528172_48528452_48530025_48530150_48531155
transcript_121176.nic	chr7	+	915	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-15	-366	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTGTGGTGTGCTTCTC	9865	False	NA	1	True	TATAAA	-15	NA	49408847	49423357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_121177.nic	chr7	+	1310	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9836	False	NA	-5	True	NA	NA	NA	49408818	49423723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_121178.nnic	chr7	+	923	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-79	-366	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	90.6598036618214	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTGTGGTGTGCTTCTC	9801	False	NA	1	True	TATAAA	-15	NA	49408783	49423357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_49408894_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_121179.nnic	chr7	+	1289	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-79	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	90.6598036618214	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9801	False	NA	-5	True	NA	NA	NA	49408783	49423723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_49408894_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_121180.known	chr7	+	1418	6	FSM	ENSMUSG00000039745.9	ENSMUST00000085272.7	1418	6	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_1	99.2685247195706	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9894	False	NA	-5	True	NA	NA	NA	49408876	49423723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_49409060_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_121181.known	chr7	+	1338	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9918	False	NA	-5	True	NA	NA	NA	49408900	49423723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_121184.known	chr7	+	983	3	FSM	ENSMUSG00000039745.9	ENSMUST00000208048.2	983	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	102	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATTGTCTCGCTCTTAC	9880	False	NA	NA	False	AATAAA	-14	NA	49408862	49412507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_49408894_49409289_49409542_49411807
transcript_121186.known	chr7	+	2507	16	FSM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	68.5528506579656	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAATGTTTTCATGAA	NA	False	NA	44	True	AATAAA	-28	NA	49428093	49508013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689_49431793_49435814_49435975_49436980_49437123_49441720_49441787_49448053_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691_49478779_49498242_49498294_49498484_49498573_49507114
transcript_121187.known	chr7	+	986	5	FSM	ENSMUSG00000030505.18	ENSMUST00000140656.8	986	5	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	95.643543953578	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATGGTTCATAGTGGG	NA	False	NA	NA	False	ATTAAA	-12	NA	49428093	49432253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689
transcript_121188.known	chr7	+	1232	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4312	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	51396394	51397626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_51396400_51397600
transcript_121193.nnic	chr7	+	2521	10	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	19.956124713487	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACATTATTTGTCTCT	604	False	NA	1	True	ATTAAA	-18	NA	51511761	51644201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_51512193_51513745_51513842_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
transcript_121196.nic	chr7	+	2747	10	NIC	ENSMUSG00000030498.16	novel	1857	10	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	14.8980071581387	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACATTATTTGTCTCT	579	False	NA	1	True	ATTAAA	-18	NA	51511736	51644201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_51512394_51513745_51513842_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
transcript_121202.nnic	chr7	+	2817	9	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	-192	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	15.4008928312614	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACATTATTTGTCTCT	413	False	NA	1	True	ATTAAA	-18	NA	51511570	51644201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_51512394_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
transcript_121208.known	chr7	-	3053	4	FSM	ENSMUSG00000074093.5	ENSMUST00000098414.5	3053	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	8.05536398239638	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGCAAGAGTTAGATGCA	NA	False	NA	-19	True	AATAAA	-17	NA	51655766	51646918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655485
transcript_121215.known	chr7	-	321	1	FSM	ENSMUSG00000099647.2	ENSMUST00000122119.2	321	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGCTCATCAAGAAAGC	NA	False	NA	NA	False	AAAAAG	-7	NA	54062226	54061905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_54061900_54062200
transcript_121220.known	chr7	+	3905	23	FSM	ENSMUSG00000033790.12	ENSMUST00000032627.5	3905	23	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_19	13.708973353728	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCGGTTCAGTTTGGG	NA	False	NA	NA	False	AATATA	-19	NA	55443901	55481425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475327_55475454_55475980_55476070_55479078_55479180_55480589
transcript_121227.known	chr7	+	3735	21	FSM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_19	13.6799122804205	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGGAACATCTCCAGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	55443912	55476847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475327_55475454_55475980
transcript_121230.nic	chr7	+	2571	18	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	-32	5025	-21	3034	5prime_fragment	FALSE	canonical	3	67	junction_15	9.6774986044305	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGATGTTCTACTATTT	NA	False	NA	-55	True	AATAAA	-15	NA	55443880	55471822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725
transcript_121231.nic	chr7	+	2629	18	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	-32	4967	-21	3092	5prime_fragment	FALSE	canonical	3	67	junction_15	9.6774986044305	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGTCCTGGAAAGTTTT	NA	False	NA	3	True	AATAAA	-14	NA	55443880	55471880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725
transcript_121240.nic	chr7	+	2367	13	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	-32	11422	-21	-2099	5prime_fragment	FALSE	canonical	3	83	junction_7	5.69356361751291	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAACAAAAACAGAGATA	NA	False	NA	NA	False	NA	NA	NA	55443880	55465425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607
transcript_121250.known	chr7	+	4195	31	FSM	ENSMUSG00000030447.16	ENSMUST00000085255.11	4195	31	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_15	147.013453654948	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTACCAGTTTCTTTTAA	NA	False	NA	5	True	NA	NA	NA	55491953	55580246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547572_55547721_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
transcript_121252.known	chr7	+	6440	31	FSM	ENSMUSG00000030447.16	ENSMUST00000032629.16	6440	31	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_19	46.6292707308284	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGGAAAAAATAAAACATT	NA	False	NA	NA	False	NA	NA	NA	55491818	55582350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
transcript_121267.known	chr7	+	3849	28	FSM	ENSMUSG00000030447.16	ENSMUST00000173497.8	3849	28	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_19	42.0183512067576	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAAAAATGTAT	NA	False	NA	NA	False	NA	NA	NA	55491997	55575534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859
transcript_121279.nic	chr7	+	1160	9	ISM	ENSMUSG00000030447.16	ENSMUST00000173497.8	3849	28	-229	46633	-50	1150	5prime_fragment	FALSE	canonical	3	513	junction_1	48.818381527863	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATCCAAAATCGACAAGT	NA	False	NA	NA	False	AATAAA	-1	NA	55491768	55528901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824
transcript_121280.known	chr7	+	1876	12	FSM	ENSMUSG00000030447.16	ENSMUST00000168271.9	1876	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	173.366854143756	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAACATTCAACTATAAA	NA	False	NA	NA	False	AATAAA	-16	NA	55491492	55542179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_55491815_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736
transcript_121287.known	chr7	-	2979	7	FSM	ENSMUSG00000030452.17	ENSMUST00000119041.8	2979	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	81.5127801840505	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55611993	55581034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611934
transcript_121288.nic	chr7	-	2998	7	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612221	55581034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
transcript_121291.known	chr7	-	3039	6	FSM	ENSMUSG00000030452.17	ENSMUST00000117812.8	3039	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	82.412620392753	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612187	55581034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611947
transcript_121295.known	chr7	-	3183	5	FSM	ENSMUSG00000047037.6	ENSMUST00000052204.6	3183	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	3.34477204006491	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGACCCAAATAATAGTT	NA	False	NA	NA	False	NA	NA	NA	55669702	55627314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_55629652_55635151_55635313_55646181_55646273_55647263_55647312_55669156
transcript_121296.nic	chr7	+	4869	30	ISM	ENSMUSG00000030451.17	ENSMUST00000076226.13	15250	93	-120	96119	-63	20957	5prime_fragment	TRUE	canonical	2	7	junction_17	4.33825446960457	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATAATGGAAAAAGTTGG	NA	False	NA	NA	False	AAAAAG	-5	NA	55699880	55785429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_55700051_55700603_55700697_55717731_55717847_55722040_55722179_55734736_55734957_55737087_55737189_55738004_55738162_55740662_55740774_55742286_55742459_55744012_55744187_55747124_55747314_55748082_55748235_55749826_55749985_55750075_55750190_55753475_55753728_55756086_55756281_55758433_55758635_55762792_55763022_55763145_55763271_55764449_55764629_55771292_55771478_55772060_55772217_55773944_55774131_55780916_55781088_55781546_55781651_55782169_55782321_55784343_55784559_55784778_55784912_55785017_55785146_55785233
transcript_121299.nic	chr7	+	3084	20	ISM	ENSMUSG00000030451.17	ENSMUST00000076226.13	15250	93	-116	117076	-59	0	5prime_fragment	FALSE	canonical	2	7	junction_17	4.35094793377692	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAGAAGGAAAAAGAAATTG	NA	False	NA	NA	False	AAAAAG	-5	NA	55699884	55764472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_55700051_55700603_55700697_55717731_55717847_55722040_55722179_55734736_55734957_55737087_55737189_55738004_55738162_55740662_55740774_55742286_55742459_55744012_55744187_55747124_55747314_55748082_55748235_55749826_55749985_55750075_55750190_55753475_55753728_55756086_55756281_55758433_55758635_55762792_55763022_55763145_55763271_55764449
transcript_1213.known	chr1	-	3512	19	FSM	ENSMUSG00000003134.11	ENSMUST00000193823.2	3512	19	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_11	8.13011472441188	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACCACTGAACAGTGTGG	NA	False	NA	NA	False	CATAAA	-19	NA	39517781	39412396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_39412906_39413162_39413253_39415504_39415571_39415958_39416200_39418535_39418605_39419075_39419175_39419308_39419439_39420357_39420644_39424201_39424320_39425078_39425294_39428388_39428540_39430197_39430369_39431137_39431336_39433145_39433354_39441763_39442005_39444371_39444601_39445832_39445952_39465148_39465260_39517520
transcript_121304.nic	chr7	+	442	4	ISM	ENSMUSG00000030451.17	ENSMUST00000076226.13	15250	93	-131	159455	-74	-635	5prime_fragment	FALSE	canonical	3	14	junction_1	1.24721912892465	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAGGAAGAAGAAGA	NA	False	NA	27	True	AAGAAA	-19	NA	55699869	55722093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_55700051_55700603_55700697_55717731_55717847_55722040
transcript_121306.nic	chr7	+	370	3	ISM	ENSMUSG00000030451.17	ENSMUST00000076226.13	15250	93	-112	163702	-55	66	5prime_fragment	FALSE	canonical	3	14	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGAACTTTTAATGCTTA	NA	False	NA	NA	False	NA	NA	NA	55699888	55717846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_55700051_55700603_55700697_55717731
transcript_121307.known	chr7	+	5579	9	FSM	ENSMUSG00000033676.14	ENSMUST00000039697.14	5579	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	6.11223158919883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAAGACTGATTTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	57240909	57478550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_57241104_57241228_57241321_57241518_57241587_57415171_57415393_57438613_57438697_57442239_57442378_57461801_57461955_57466022_57466268_57474165
transcript_121312.nic	chr7	+	890	5	ISM	ENSMUSG00000033676.14	ENSMUST00000039697.14	5579	9	-31	39653	-31	23368	5prime_fragment	FALSE	canonical	3	32	junction_3	4.32290411644765	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTCCAATGTTACTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	57240878	57438897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_57241104_57241228_57241321_57241518_57241587_57415171_57415393_57438613
transcript_121313.known	chr7	+	5419	21	FSM	ENSMUSG00000025324.9	ENSMUST00000168747.3	5419	21	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	4.04474968323134	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGAGTGTCTGGTGCCA	NA	False	NA	NA	False	AATAAA	-16	NA	58307993	58479168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_58308664_58389939_58390145_58423702_58423789_58434479_58434587_58434973_58435106_58436202_58436334_58437941_58438195_58440731_58440950_58444217_58444413_58447047_58447649_58453211_58453316_58453416_58453544_58457122_58457308_58463273_58463599_58465904_58465982_58469357_58469484_58474047_58474249_58476820_58476902_58476993_58477099_58477522_58477711_58477866
transcript_121323.known	chr7	+	9856	13	FSM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	78.4443805083151	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTTTGCTAGTATTTTG	NA	False	NA	9	True	NA	NA	NA	58878549	58961284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_58879020_58890714_58890782_58893097_58893218_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
transcript_121325.nic	chr7	+	3387	12	NIC	ENSMUSG00000025326.13	novel	9856	13	NA	NA	-138	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	67.1986078171415	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAGAAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	58878359	58954692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_58879020_58893097_58893218_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
transcript_121326.known	chr7	+	4911	11	FSM	ENSMUSG00000025326.13	ENSMUST00000107537.5	4911	11	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	51.6876194073591	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATTTGTGTTCTTCAG	NA	False	NA	7	True	AATAAA	-7	NA	58878498	58956475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_58879020_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
transcript_121335.nic	chr7	+	1063	5	ISM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	-101	39330	-49	89	5prime_fragment	FALSE	canonical	3	50	junction_1	65.8800994231187	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAACAAGAAGGAAGGAAAA	NA	False	NA	NA	False	GATAAA	-3	NA	58878448	58921954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_58879020_58890714_58890782_58893097_58893218_58896920_58896966_58921694
transcript_121336.nic	chr7	+	1284	4	ISM	ENSMUSG00000025326.13	ENSMUST00000202207.4	3586	6	-309	11505	-237	-131	5prime_fragment	FALSE	canonical	3	99	junction_1	51.6161042914149	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGGATGAAGATGAAAAGG	NA	False	NA	NA	False	AAGAAA	-11	NA	58878260	58925705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_58879020_58896920_58896966_58921694_58921985_58925515
transcript_121338.nic	chr7	+	942	4	NIC	ENSMUSG00000025326.13	novel	9856	13	NA	NA	4	89	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	65.3316326309256	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAACAAGAAGGAAGGAAAA	NA	False	NA	NA	False	GATAAA	-3	NA	58878502	58921954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_58879020_58893097_58893218_58896920_58896966_58921694
transcript_121340.known	chr7	+	729	4	FSM	ENSMUSG00000025326.13	ENSMUST00000202440.4	729	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	92.3231041265162	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGCTTTATAAAATTAATG	NA	False	NA	NA	False	ATTAAA	-6	NA	58878549	58921841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_58879020_58890714_58890782_58896920_58896966_58921694
transcript_121341.nic	chr7	+	1064	3	ISM	ENSMUSG00000025326.13	ENSMUST00000202207.4	3586	6	-309	15256	-237	89	5prime_fragment	FALSE	canonical	3	99	junction_1	58.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAACAAGAAGGAAGGAAAA	NA	False	NA	NA	False	GATAAA	-3	NA	58878260	58921954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_58879020_58896920_58896966_58921694
transcript_121356.known	chr7	-	1932	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	0	0	0	0	multi-exon	FALSE	canonical	3	1774	junction_5	121.666210044805	830	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTCTCAGAAGTCAATG	NA	False	NA	NA	False	NA	NA	NA	59654859	59632242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
transcript_121358.known	chr7	-	2547	1	FSM	ENSMUSG00000070527.4	ENSMUST00000094340.4	2547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGACTCTTTTTTTAAT	NA	False	NA	0	True	AATAAA	-18	NA	62069887	62067340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_62067300_62069900
transcript_121359.known	chr7	-	2640	1	FSM	ENSMUSG00000070526.3	ENSMUST00000094339.3	2640	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAGCCTAACATTTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	62114258	62111618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_62111600_62114300
transcript_121360.known	chr7	-	2814	5	FSM	ENSMUSG00000030525.9	ENSMUST00000208304.2	2814	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	6.86931583201704	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAGGCTGTCTTGGAT	NA	False	NA	NA	False	NA	NA	NA	62862317	62789172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_62791544_62798330_62798441_62809284_62809330_62861855_62861996_62862169
transcript_121363.known	chr7	-	6396	2	FSM	ENSMUSG00000052040.11	ENSMUST00000063694.10	6396	2	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTGCCTCGGTTGAG	NA	False	NA	-13	True	AATAAA	-16	NA	63588663	63536098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_63541546_63587714
transcript_121367.known	chr7	+	2765	14	FSM	ENSMUSG00000030523.19	ENSMUST00000205434.2	2765	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_13	349.928648686554	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAATCTTAGATGAATTG	NA	False	NA	13	True	AATAAA	-18	NA	63835297	63874512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237_63867409_63868855_63868991_63869989_63870041_63873438
transcript_12137.known	chr10	+	3089	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	0	0	0	0	multi-exon	TRUE	canonical	3	5618	junction_10	706.418033369635	11148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2181	False	NA	32	True	AATAAA	-20	NA	81012464	81018332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
transcript_121374.known	chr7	+	2575	11	FSM	ENSMUSG00000030523.19	ENSMUST00000205731.2	2575	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	225.867682504603	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTGGCTCTTTGACTCAT	NA	False	NA	NA	False	NA	NA	NA	63835302	63868483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237
transcript_121378.nic	chr7	+	2066	11	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	301.433309373732	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835140	63861175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
transcript_121385.known	chr7	+	1992	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835128	63861175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
transcript_121403.nic	chr7	+	495	3	ISM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	33	12060	33	84	5prime_fragment	FALSE	canonical	3	864	junction_1	19.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGGGGTGCTGTACAAA	NA	False	NA	13	True	AATAAA	-16	NA	63835161	63849115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_63835372_63847024_63847105_63848910
transcript_121406.known	chr7	+	5205	16	FSM	ENSMUSG00000030522.15	ENSMUST00000032736.11	5205	16	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	5.98739416515139	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGTCTTGCCTTTGTTA	727	False	NA	5	True	AATAAA	-17	NA	63937417	63990554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_63937590_63938086_63938148_63947207_63947345_63949286_63949360_63950287_63950431_63957875_63957967_63963831_63964013_63967838_63967927_63968006_63968096_63969162_63969294_63970312_63970383_63970910_63970982_63976399_63976570_63983059_63983231_63986459_63986643_63987180
transcript_121410.nic	chr7	+	830	3	ISM	ENSMUSG00000030522.15	ENSMUST00000206732.2	3093	5	-177	5310	-177	-5310	5prime_fragment	FALSE	canonical	3	43	junction_2	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATTTTAAAAAATCAAAAT	533	False	NA	NA	False	NA	NA	NA	63937223	63947610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_63937590_63938086_63938148_63947207
transcript_121412.known	chr7	-	2248	11	FSM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_4	61.7421250039226	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACGGGCTTATTTCATC	NA	False	NA	-3	True	NA	NA	NA	64042016	64026274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
transcript_121414.nic	chr7	-	1873	10	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	-11	749	-11	0	5prime_fragment	FALSE	canonical	3	635	junction_3	59.9785970056439	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATTGCTTGAAAAGAA	NA	False	NA	NA	False	AATAAA	-17	NA	64042027	64027023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
transcript_121415.nic	chr7	-	1805	10	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	0	806	0	-57	5prime_fragment	FALSE	canonical	3	635	junction_3	59.9785970056439	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAACGAAGGAAAAAGAAATA	NA	False	NA	NA	False	AAGAAA	-4	NA	64042016	64027080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
transcript_121417.nic	chr7	-	1477	7	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	-62	6472	-62	4988	5prime_fragment	FALSE	canonical	3	643	junction_3	64.1655844064575	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAGGAGGATGCGTATGA	NA	False	NA	-108	True	AAGAAA	-3	NA	64042078	64032746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
transcript_121421.nic	chr7	-	947	3	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	3	12395	3	-935	5prime_fragment	FALSE	canonical	3	715	junction_1	4.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAGAGGAAGAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	64042013	64038669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_64038772_64039194_64039880_64041853
transcript_121422.known	chr7	-	2276	2	FSM	ENSMUSG00000030521.12	ENSMUST00000205516.2	2276	2	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	64041984	64037734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_64039880_64041853
transcript_121425.nnic	chr7	+	968	4	NNC	ENSMUSG00000033429.11	novel	828	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	84.9156444164835	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042473	64061873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_64042592_64048440_64048662_64049916_64050255_64061582
transcript_121426.known	chr7	+	532	3	FSM	ENSMUSG00000033429.11	ENSMUST00000206194.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_2	103	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042522	64061869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_64042592_64049916_64050093_64061582
transcript_121427.known	chr7	+	828	3	FSM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	55.5	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042392	64061873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_64042592_64049916_64050255_64061582
transcript_121428.nnic	chr7	+	589	3	NNC	ENSMUSG00000033429.11	novel	828	3	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	99	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042474	64061873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_64042592_64050073_64050255_64061582
transcript_121429.known	chr7	+	391	2	FSM	ENSMUSG00000033429.11	ENSMUST00000206882.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042487	64061869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_64042592_64061582
transcript_121430.known	chr7	+	3321	15	FSM	ENSMUSG00000030519.15	ENSMUST00000032732.15	3321	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.24539969815448	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATATTTATTTAGCAAA	NA	False	NA	NA	False	AATAAA	-24	NA	64151453	64403626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_64151567_64203394_64203520_64284778_64284833_64344771_64345766_64364178_64364260_64365258_64365296_64383260_64383407_64384402_64384439_64386628_64386716_64389446_64389633_64393007_64393188_64394163_64394377_64395445_64395566_64399850_64399992_64402818
transcript_121432.nic	chr7	+	2849	14	NIC	ENSMUSG00000030519.15	novel	3321	15	NA	NA	-76	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	1.27794213275663	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	64151377	64403114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_64151567_64203394_64203520_64284778_64284833_64344771_64345766_64364178_64364260_64365258_64365296_64383260_64383407_64386628_64386716_64389446_64389633_64393007_64393188_64394163_64394377_64395445_64395566_64399850_64399992_64402818
transcript_121442.known	chr7	+	3192	19	FSM	ENSMUSG00000030515.10	ENSMUST00000032728.9	3192	19	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_9	7.60035736651675	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCGGTATGTTCCATTGT	NA	False	NA	11	True	AATAAA	-24	NA	65294645	65341839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65294963_65296000_65296070_65297225_65297417_65302007_65302132_65305431_65305554_65308607_65308726_65310866_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711_65325879_65327743_65327907_65332514_65332653_65333555_65333634_65333809_65333911_65336185_65336291_65338626_65338700_65339715_65339831_65340918
transcript_121444.nic	chr7	+	1939	14	ISM	ENSMUSG00000030515.10	ENSMUST00000032728.9	3192	19	-62	8206	-62	71	5prime_fragment	FALSE	canonical	3	56	junction_9	8.85384281226963	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAGAGGATATGCCAA	NA	False	NA	NA	False	AATAAA	-32	NA	65294583	65333633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_65294963_65296000_65296070_65297225_65297417_65302007_65302132_65305431_65305554_65308607_65308726_65310866_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711_65325879_65327743_65327907_65332514_65332653_65333555
transcript_121446.known	chr7	+	1003	6	FSM	ENSMUSG00000078681.11	ENSMUST00000107495.5	1003	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	226.65709783724	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACTTTTTATTTGCCTG	NA	False	NA	28	True	AATAAA	-28	NA	65343164	65351661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65343318_65343598_65343692_65344890_65345076_65347443_65347619_65348839_65348916_65351340
transcript_121447.known	chr7	+	905	6	FSM	ENSMUSG00000078681.11	ENSMUST00000206517.2	905	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	235.550079600921	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343224	65351650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65343318_65343598_65343692_65344917_65345076_65347443_65347619_65348839_65348916_65351340
transcript_121448.known	chr7	+	908	5	FSM	ENSMUSG00000078681.11	ENSMUST00000032726.14	908	5	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_3	21.6333076527839	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343155	65351650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65343318_65344890_65345076_65347443_65347619_65348839_65348916_65351340
transcript_121449.nic	chr7	+	846	5	NIC	ENSMUSG00000078681.11	novel	905	6	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	208.078711068672	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343190	65351650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_65343318_65344917_65345076_65347443_65347619_65348839_65348916_65351340
transcript_121452.nic	chr7	+	4313	22	Fusion	ENSMUSG00000108793.2_ENSMUSG00000030513.15	novel	619	7	NA	NA	-336	0	multi-exon	FALSE	canonical	1	3	junction_1	40.8302164574683	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGGGCTTGTATTTCTTT	NA	False	NA	15	True	AATAAA	-20	NA	65511145	65700088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_+_65511515_65559949_65560055_65576941_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65618715_65618820_65620289_65620408_65629894_65630084_65633460_65633598_65674975_65675156_65675313_65675353_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
transcript_121453.known	chr7	+	4405	22	FSM	ENSMUSG00000030513.15	ENSMUST00000055576.12	4405	22	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	20.9878487682365	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGGCCAGTGGGTGAA	NA	False	NA	61	True	AATAAA	-13	NA	65511776	65700134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65512192_65559949_65560055_65576941_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65618715_65618820_65620289_65620408_65629894_65630084_65633460_65633598_65674975_65675156_65675313_65675353_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
transcript_121454.known	chr7	+	4207	21	FSM	ENSMUSG00000030513.15	ENSMUST00000098391.11	4207	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_14	34.1808060174128	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCAAAGGGGCTTGTAT	NA	False	NA	9	True	AATAAA	-14	NA	65511883	65700082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65512192_65559949_65560055_65576941_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65618715_65618820_65620289_65620408_65629894_65630084_65633460_65633598_65674975_65675156_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
transcript_121458.known	chr7	+	1248	9	FSM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	0	0	0	0	multi-exon	FALSE	canonical	3	2395	junction_6	274.913622798144	1168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGCTGTGTATCTGCA	NA	False	NA	23	True	AATAAA	-23	NA	65710085	65724335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65719866_65719947_65720337_65720414_65720979_65721074_65724069
transcript_121461.known	chr7	+	955	8	FSM	ENSMUSG00000030512.14	ENSMUST00000032723.9	955	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_5	1022.69418095299	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710291	65724328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65720337_65720414_65720979_65721074_65724069
transcript_121467.known	chr7	+	2026	6	FSM	ENSMUSG00000030512.14	ENSMUST00000139082.3	2026	6	0	0	0	0	multi-exon	FALSE	canonical	3	2772	junction_5	101.577556576244	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGCCAGGACAGCCAAGG	NA	False	NA	NA	False	NA	NA	NA	65710311	65721360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65720414_65720979
transcript_121471.known	chr7	+	1157	6	FSM	ENSMUSG00000075701.11	ENSMUST00000206575.2	1157	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	154.225808475754	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACAGTCTCTGGTTTTTC	NA	False	NA	5	True	AGTAAA	-14	NA	65729425	65739151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737017_65738514
transcript_121473.known	chr7	+	897	6	FSM	ENSMUSG00000075701.11	ENSMUST00000205279.2	897	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	173.168819364226	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGATGATACTTTGGG	NA	False	NA	NA	False	CATAAA	-6	NA	65729434	65738868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65729567_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737020_65738514
transcript_121474.known	chr7	+	702	5	FSM	ENSMUSG00000075701.11	ENSMUST00000205965.2	702	5	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_3	16.7089048115069	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGCTAGTTGGGCATCT	NA	False	NA	NA	False	NA	NA	NA	65729424	65737197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940
transcript_121479.nic	chr7	+	388	3	ISM	ENSMUSG00000075701.11	ENSMUST00000205965.2	702	5	-33	3943	-5	-3943	5prime_fragment	FALSE	canonical	3	435	junction_1	13.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAACTGGGTTGACTTA	NA	False	NA	NA	False	AAAACA	-20	NA	65729391	65733254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_65729538_65730079_65730215_65733147
transcript_121481.known	chr7	-	3443	13	FSM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.11214326382511	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGTTTTTCATTGGAG	NA	False	NA	0	True	AATAAA	-19	NA	66077265	66040637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_66042510_66048435_66048511_66049825_66049984_66051718_66051884_66055721_66055907_66057548_66057652_66058913_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
transcript_121489.nic	chr7	-	4096	7	NIC	ENSMUSG00000030509.18	novel	4928	6	NA	NA	-36	-957	intron_retention	FALSE	canonical	3	29	junction_2	17.1407571465077	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTCTGAGTGCTCTTCCA	NA	False	NA	NA	False	NA	NA	NA	66339380	66295269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_66297674_66309397_66310004_66327904_66327994_66328827_66329090_66331452_66331557_66338570_66338669_66338847
transcript_121492.nic	chr7	-	2638	7	NIC	ENSMUSG00000030509.18	novel	4928	6	NA	NA	-36	610	intron_retention	FALSE	canonical	3	29	junction_2	17.1407571465077	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCCTCTTGTGCAACTC	NA	False	NA	NA	False	TTTAAA	-45	NA	66339380	66296727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_66297674_66309397_66310004_66327904_66327994_66328827_66329090_66331452_66331557_66338570_66338669_66338847
transcript_121493.known	chr7	-	4928	6	FSM	ENSMUSG00000030509.18	ENSMUST00000124899.8	4928	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	20.3273215156351	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGAATTTGTGTTTTCTT	NA	False	NA	-2	True	ATTAAA	-32	NA	66339344	66294312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_66297674_66309397_66310004_66328827_66329090_66331452_66331557_66338570_66338669_66338847
transcript_121497.known	chr7	-	2137	6	FSM	ENSMUSG00000030509.18	ENSMUST00000068980.4	2137	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	30.261526729496	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTGTTCATCTTAGTGT	NA	False	NA	NA	False	AATAAA	-26	NA	66339222	66326770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_66327994_66328827_66329090_66331452_66331557_66337631_66337707_66338570_66338669_66338847
transcript_121499.known	chr7	-	540	2	FSM	ENSMUSG00000030509.18	ENSMUST00000208059.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTTACTCCTGGCCCCT	NA	False	NA	NA	False	NA	NA	NA	66339263	66338544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_66338669_66338847
transcript_121507.known	chr7	+	2647	8	FSM	ENSMUSG00000053091.17	ENSMUST00000077967.13	2647	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	18.4113984215413	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGCGTGTCTGGGTCT	NA	False	NA	11	True	AATAAA	-17	NA	66339705	66364492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359906_66360495_66361620_66361793_66363548
transcript_121508.known	chr7	+	5088	8	FSM	ENSMUSG00000053091.17	ENSMUST00000130161.9	5088	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	19.3454102556442	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAAGTGTCCTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	66339705	66367004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359977_66360495_66361620_66361793_66363548
transcript_121526.known	chr7	-	5538	12	FSM	ENSMUSG00000030557.18	ENSMUST00000156690.8	5538	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	17.206571875376	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGACTCTGTCATGTTTG	NA	False	NA	NA	False	AGTAAA	-24	NA	67022606	66880910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_66884977_66886271_66886399_66890061_66890189_66894268_66894293_66901404_66901593_66914612_66914673_66915690_66915911_66918016_66918149_66945122_66945327_66966539_66966731_66999616_66999670_67022460
transcript_121528.known	chr7	-	4759	11	FSM	ENSMUSG00000030557.18	ENSMUST00000107476.8	4759	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	5.22015325445528	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAGAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67022606	66881665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66918016_66918149_66945122_66945327_66966539_66966731_66999616_66999670_67022460
transcript_121530.known	chr7	-	2476	11	FSM	ENSMUSG00000030557.18	ENSMUST00000032776.15	2476	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	11.6120626935958	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAATAGAAAACACGCA	NA	False	NA	NA	False	ATTAAA	-3	NA	67022606	66883954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66917814_66917953_66945122_66945327_66966539_66966731_66999616_66999670_67022460
transcript_121539.known	chr7	-	2664	11	FSM	ENSMUSG00000030557.18	ENSMUST00000076325.12	2664	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	15.401623291069	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGAAAGAAAACACCCTT	NA	False	NA	NA	False	ATTAAA	-29	NA	67022606	66883786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66917814_66917953_66945122_66945327_66966539_66966731_66999596_66999670_67022460
transcript_121546.known	chr7	+	3319	4	FSM	ENSMUSG00000043831.13	ENSMUST00000179106.3	3319	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.8977121983832	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTCTCCCTCTTTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	66872376	66878211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_66872787_66873356_66873640_66874123_66874150_66875611
transcript_121547.known	chr7	+	2898	3	FSM	ENSMUSG00000043831.13	ENSMUST00000058771.13	2898	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	19.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAACATGATTCTCCCT	NA	False	NA	NA	False	AATAAA	-16	NA	66872355	66878204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_66872378_66873356_66873640_66875611
transcript_121549.known	chr7	+	2110	3	FSM	ENSMUSG00000043831.13	ENSMUST00000208998.2	2110	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	27.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAACCAGACACAATGTC	NA	False	NA	NA	False	AGTAAA	-24	NA	66872363	66877015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_66872787_66873356_66873640_66875611
transcript_121555.nic	chr7	-	2938	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTTCTCTCCTCCTGT	462	False	NA	-2	True	AATAAA	-16	NA	67295089	67163157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_121557.known	chr7	-	2923	10	FSM	ENSMUSG00000030556.14	ENSMUST00000053950.10	2923	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	16.1894646431591	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTTCTCTCCTCCTGT	572	False	NA	-2	True	AATAAA	-16	NA	67294979	67163157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209813_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_121560.nic	chr7	-	1386	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	15	-468	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	550	False	NA	NA	False	AATACA	-17	NA	67295001	67164621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_121562.known	chr7	-	2761	9	FSM	ENSMUSG00000030556.14	ENSMUST00000187953.8	2761	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	25.6709953059869	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGTCTTCTCTCCTCCT	596	False	NA	-4	True	AATAAA	-14	NA	67294955	67163159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67290851_67291089_67294925
transcript_121564.nic	chr7	-	2715	9	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	20.648471493067	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTTCTCTCCTCCTGT	573	False	NA	-2	True	AATAAA	-16	NA	67294978	67163157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_121569.nic	chr7	-	1252	9	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	0	-468	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	20.648471493067	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	572	False	NA	NA	False	AATACA	-17	NA	67294979	67164621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_121582.known	chr7	-	1817	6	FSM	ENSMUSG00000030556.14	ENSMUST00000032775.12	1817	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	30.7662152368471	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTGTTCTGGGCACA	596	False	NA	NA	False	AATAAA	-16	NA	67294955	67244146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_67245480_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_121585.known	chr7	+	2492	12	FSM	ENSMUSG00000030555.17	ENSMUST00000032774.16	2492	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	30.620308714726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCCATTGCTGAGAGGCC	NA	False	NA	NA	False	NA	NA	NA	67297157	67376459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67342642_67342769_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_121586.known	chr7	+	2216	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107471.8	2216	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	12.2429571591181	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTTGTGTGTTTGAAA	NA	False	NA	13	True	AATAAA	-18	NA	67297172	67376324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_121588.known	chr7	+	1915	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107470.2	1915	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	23.6822718504792	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCAGTTTGTGTGTTTG	NA	False	NA	10	True	AATAAA	-15	NA	67305194	67376321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_67305318_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_121590.known	chr7	+	1991	10	FSM	ENSMUSG00000030555.17	ENSMUST00000126093.8	1991	10	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_1	24.6671671620895	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTTGTGTGTTTGAAA	NA	False	NA	13	True	AATAAA	-18	NA	67297197	67376324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_67297594_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_121595.known	chr7	+	11409	21	FSM	ENSMUSG00000005533.11	ENSMUST00000005671.10	11409	21	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	3.59826347006441	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCCAGTTGGTT	NA	False	NA	5	True	AATAAA	-16	NA	67602574	67883416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_67602701_67653557_67654104_67814740_67815054_67819644_67819797_67822978_67823124_67833091_67833307_67834478_67834606_67836737_67836977_67839320_67839489_67839693_67839899_67843094_67843379_67844716_67844854_67845337_67845498_67850991_67851095_67851649_67851721_67856998_67857229_67857510_67857622_67861741_67861905_67864666_67864797_67868149_67868285_67875767
transcript_121604.known	chr7	+	2815	9	FSM	ENSMUSG00000074071.12	ENSMUST00000210558.2	2815	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	20.4328167417025	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACTTTCAAGGTGCCCA	NA	False	NA	58	True	AATAAA	-29	NA	67925742	68012840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_121607.nic	chr7	+	2719	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-87	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	44.7788215247215	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67925655	68012835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_121608.nnic	chr7	+	2811	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-87	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	51.6048565978997	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67925655	68012835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_121609.nnic	chr7	+	2797	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-87	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	43.556203428936	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67925655	68012835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_67925790_67950580_67950712_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_121611.nnic	chr7	+	2633	7	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-87	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_3	52.588813766174	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67925655	68012835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_121616.known	chr7	+	3984	1	FSM	ENSMUSG00000074071.12	ENSMUST00000208070.2	3984	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAGAAAAGAAAAGAAA	NA	False	NA	NA	False	AATACA	-4	NA	67925756	67929740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_67925800_67929700
transcript_121617.known	chr7	-	3905	8	FSM	ENSMUSG00000042659.16	ENSMUST00000048068.15	3905	8	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	213.33809518495	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGGTGGCTCATTTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	68398989	68386742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_68389282_68389632_68389788_68390702_68390866_68391392_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
transcript_121620.known	chr7	-	1129	5	FSM	ENSMUSG00000042659.16	ENSMUST00000118110.3	1129	5	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	68.2289344779764	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCCTTCACTGTTAAA	NA	False	NA	69	True	NA	NA	NA	68398936	68391258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
transcript_121625.known	chr7	-	5802	23	FSM	ENSMUSG00000032776.10	ENSMUST00000079323.8	5802	23	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_22	2.92220057462644	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTTATCAGTACATAAC	NA	False	NA	NA	False	AATAAA	-24	NA	71956356	71727577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_71730606_71732834_71732933_71739918_71740029_71752891_71753002_71771445_71771488_71776885_71777009_71810887_71811008_71812945_71813021_71814357_71814460_71833552_71833656_71835510_71835614_71850093_71850188_71852036_71852224_71861342_71861474_71863691_71863857_71873768_71873805_71877727_71877840_71878219_71878297_71879075_71879219_71895208_71895318_71896855_71896919_71908846_71909380_71956218
transcript_121627.known	chr7	+	3586	4	FSM	ENSMUSG00000070509.16	ENSMUST00000094312.12	3586	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	7.93025150224688	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGCTGTTGGAGTTTAT	NA	False	NA	33	True	AGTAAA	-30	NA	73025267	73069647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_73025637_73041128_73041245_73058979_73059498_73067064
transcript_121631.known	chr7	+	3371	3	FSM	ENSMUSG00000070509.16	ENSMUST00000139780.3	3371	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	3	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGCTGTTGGAGTTTAT	NA	False	NA	33	True	AGTAAA	-30	NA	73040974	73069647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_73041245_73058979_73059498_73067064
transcript_121634.known	chr7	+	1972	1	FSM	ENSMUSG00000070509.16	ENSMUST00000206253.2	1972	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	73041023	73042995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_73041000_73043000
transcript_121638.nic	chr7	-	4943	33	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	-199	25167	-115	8	5prime_fragment	FALSE	canonical	2	10	junction_5	13.1278270764815	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGAAGAAGAAAGAGAACA	NA	False	NA	NA	False	AAAAAG	-16	NA	73191693	73101552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_73101588_73102846_73102976_73104076_73104200_73105238_73105390_73105521_73105661_73113383_73113524_73114095_73114138_73118203_73118380_73119305_73119477_73121544_73121638_73122759_73122857_73124253_73124403_73125091_73125242_73128406_73128479_73130148_73130302_73130708_73130872_73134156_73134346_73140226_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_121641.nic	chr7	-	4642	32	NIC	ENSMUSG00000078671.12	novel	9085	39	NA	NA	-6	8	combination_of_known_junctions	FALSE	canonical	2	3	junction_27	13.8258079568888	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGAAGAAGAAAGAGAACA	NA	False	NA	NA	False	AAAAAG	-16	NA	73191500	73101552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_73101588_73102846_73102976_73104076_73104200_73105238_73105390_73105521_73105661_73113383_73113524_73114095_73114138_73118203_73118380_73119305_73119477_73121544_73121638_73122759_73122857_73124253_73124403_73125091_73125242_73128406_73128479_73130148_73130302_73130708_73130872_73134156_73134346_73140226_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_121657.nic	chr7	-	3933	25	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	-199	42995	-115	4943	5prime_fragment	FALSE	canonical	3	10	junction_9	13.8533364412894	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAGGAGGAAGAACGGCA	NA	False	NA	NA	False	NA	NA	NA	73191693	73119380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_73119477_73121544_73121638_73122759_73122857_73124253_73124403_73125091_73125242_73128406_73128479_73130148_73130302_73130708_73130872_73134156_73134346_73140226_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_121663.nic	chr7	-	2987	16	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	-199	63625	-115	7444	5prime_fragment	FALSE	canonical	3	19	junction_14	8.62142035217451	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGAAACTTTCTGATG	NA	False	NA	-7	True	NA	NA	NA	73191693	73140010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_121665.nic	chr7	-	2702	15	NIC	ENSMUSG00000078671.12	novel	9085	39	NA	NA	-22	7444	combination_of_known_junctions	FALSE	canonical	2	3	junction_10	12.7585505542322	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGAAACTTTCTGATG	NA	False	NA	-7	True	NA	NA	NA	73191516	73140010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_121670.nic	chr7	-	1088	6	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	-19	81222	-19	0	5prime_fragment	FALSE	canonical	3	19	junction_4	10.0677703589226	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGTGAGGCAGAACAAA	NA	False	NA	NA	False	NA	NA	NA	73191513	73157607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_121671.known	chr7	-	748	5	FSM	ENSMUSG00000078671.12	ENSMUST00000172704.6	748	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	17.5926120857592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGTGAGGCAGAACAAA	NA	False	NA	NA	False	NA	NA	NA	73187369	73157607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73187056
transcript_121672.known	chr7	-	896	5	FSM	ENSMUSG00000078671.12	ENSMUST00000197642.2	896	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	17.5926120857592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGACGAACAGGAACAGG	NA	False	NA	NA	False	NA	NA	NA	73191484	73157637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190993
transcript_121673.nic	chr7	-	1212	5	ISM	ENSMUSG00000078671.12	ENSMUST00000026895.14	1571	9	-200	13112	-115	-6202	5prime_fragment	FALSE	canonical	3	19	junction_3	11.146748404804	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAAGTCTTTATCATGGG	NA	False	NA	-2	True	NA	NA	NA	73191693	73163839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_121676.known	chr7	-	1387	2	FSM	ENSMUSG00000078671.12	ENSMUST00000200218.2	1387	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTGTTGTATGACTGTA	NA	False	NA	NA	False	AATAAA	-13	NA	73191273	73189545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_73190653_73190993
transcript_121677.known	chr7	-	9085	39	FSM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	12.1879612278661	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGCTAACCAGTTACATT	NA	False	NA	2	True	ATTAAA	-25	NA	73191494	73076385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_73079749_73085482_73085727_73091333_73091548_73093982_73094083_73096882_73097062_73098904_73099040_73101446_73101588_73102846_73102976_73104076_73104200_73105238_73105390_73105521_73105661_73113383_73113524_73114095_73114138_73118203_73118380_73119305_73119477_73121544_73121638_73122759_73122857_73124253_73124403_73125091_73125242_73128406_73128479_73130148_73130302_73130708_73130872_73134156_73134346_73140226_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
transcript_121679.known	chr7	-	519	5	FSM	ENSMUSG00000101970.9	ENSMUST00000187421.7	519	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_4	79.8780320238299	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGATTCTTTTAATGTGGA	NA	False	NA	NA	False	NA	NA	NA	73207721	73194011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207522
transcript_121680.known	chr7	-	5140	5	FSM	ENSMUSG00000101970.9	ENSMUST00000184587.5	5140	5	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	46.3384289763906	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTTGTTGTATGACT	NA	False	NA	NA	False	AATAAA	-10	NA	73208143	73189548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207786
transcript_121685.known	chr7	+	2683	3	FSM	ENSMUSG00000078670.4	ENSMUST00000107456.4	2683	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	1.5	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGAGTCACGAGTGTGCT	NA	False	NA	NA	False	AATAAA	-32	NA	73390049	73426667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_73390577_73416234_73416367_73424643
transcript_121686.known	chr7	-	5368	6	FSM	ENSMUSG00000025789.10	ENSMUST00000026896.10	5368	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	2.31516738055805	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTGTCTATAGAGGC	NA	False	NA	NA	False	NA	NA	NA	73663422	73588866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_73593213_73610439_73610734_73616488_73616747_73621665_73621795_73626405_73626469_73663144
transcript_121687.known	chr7	-	4589	10	FSM	ENSMUSG00000025790.15	ENSMUST00000026897.14	4589	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.82574185835055	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGATTTCCATGAGTGT	NA	False	NA	NA	False	TATAAA	-20	NA	74204362	73931605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_73934418_73946968_73947034_73952869_73953046_73968206_73968346_73970232_73970432_73977607_73977773_73996395_73996660_74009568_74009668_74153924_74154391_74204158
transcript_121692.known	chr7	+	1381	6	FSM	ENSMUSG00000066406.17	ENSMUST00000208187.2	1381	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	3.86781592116274	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	75105304	75253049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_75105497_75184555_75184600_75219631_75219780_75229249_75229547_75235904_75236089_75252533
transcript_121693.known	chr7	-	656	3	FSM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGAGGTGTTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	75431847	75419509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_75419986_75430372_75430505_75431799
transcript_121694.known	chr7	-	3009	1	FSM	ENSMUSG00000097415.3	ENSMUST00000206358.2	3009	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTAGTGGTCTTGCCC	NA	False	NA	0	True	NA	NA	NA	75421794	75418785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_75418800_75421800
transcript_121697.known	chr7	+	3403	3	FSM	ENSMUSG00000055652.15	ENSMUST00000171155.4	3403	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTGGGTTCTGATTC	NA	False	NA	17	True	AATAAA	-18	NA	75498057	75523879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_75498222_75515084_75516890_75522445
transcript_121698.known	chr7	+	3385	3	FSM	ENSMUSG00000055652.15	ENSMUST00000092073.11	3385	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	16	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTTTGGGTTCTGATT	NA	False	NA	16	True	AATAAA	-17	NA	75498085	75523878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_75498233_75515084_75516890_75522445
transcript_121701.nic	chr7	+	2318	2	ISM	ENSMUSG00000055652.15	ENSMUST00000171155.4	3403	3	1	6640	1	0	5prime_fragment	FALSE	canonical	3	36	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGGCTGAAGGAGAAGCA	NA	False	NA	NA	False	AATAAA	-18	NA	75498058	75517239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_75498222_75515084
transcript_121702.known	chr7	+	2299	2	FSM	ENSMUSG00000055652.15	ENSMUST00000206019.2	2299	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGGCTGAAGGAGAAGCA	NA	False	NA	NA	False	AATAAA	-18	NA	75498088	75517239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_75498233_75515084
transcript_121708.known	chr7	-	19703	17	FSM	ENSMUSG00000059146.13	ENSMUST00000039431.14	19703	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	14.7690554877419	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTGGATTTATTGTGT	NA	False	NA	9	True	AATAAA	-24	NA	78228156	77825706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_77842493_77848540_77848700_77896902_77897147_77900448_77900622_77910031_77910163_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283
transcript_121713.nic	chr7	-	3909	15	NIC	ENSMUSG00000059146.13	novel	3977	14	NA	NA	-6848	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_14	10.0315827794633	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCATCAGACCTCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	78235294	77950437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_77952496_77954039_77954175_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283_78227547_78235178
transcript_121714.known	chr7	-	3977	14	FSM	ENSMUSG00000059146.13	ENSMUST00000039438.9	3977	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	6.48804088737217	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCATCAGACCTCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	78227730	77950437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_77952496_77954039_77954175_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283
transcript_121715.nnic	chr7	-	3710	14	NIC	ENSMUSG00000059146.13	novel	3977	14	NA	NA	-6912	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_13	10.4036861924287	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCATCAGACCTCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	78235358	77950437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_77952496_77954039_77954175_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78235178
transcript_121718.known	chr7	+	825	6	FSM	ENSMUSG00000030611.11	ENSMUST00000133553.8	825	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	143.488814895099	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78433103	78442737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_78433172_78433320_78433435_78438422_78438522_78440384_78440515_78441621_78441688_78442389
transcript_121721.known	chr7	+	548	4	FSM	ENSMUSG00000030611.11	ENSMUST00000136001.8	548	4	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_2	42.7083130081252	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGTAGAAAGGTTACCAA	NA	False	NA	NA	False	NA	NA	NA	78433117	78440671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384
transcript_121723.known	chr7	-	1134	4	FSM	ENSMUSG00000030612.7	ENSMUST00000032841.7	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	24.7296493213219	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACAGACCTACTGGGC	NA	False	NA	NA	False	AGTAAA	-18	NA	78432837	78424983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_78425474_78430185_78430360_78431147_78431335_78432554
transcript_121727.known	chr7	-	2269	5	FSM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	8.89873586527884	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACACTGTCTCTTCCTTGA	NA	False	NA	-3	True	AATAAA	-18	NA	78497011	78477221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
transcript_121734.known	chr7	+	4956	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGTAATCTGATGGAAT	NA	False	NA	2	True	NA	NA	NA	78545674	78560957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
transcript_121736.known	chr7	+	2007	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAACTGGTCCTTTCTGG	NA	False	NA	NA	False	AATAAA	-18	NA	78545681	78558129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
transcript_121737.known	chr7	+	2230	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	306.901721511409	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAACTGGTCCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	78545756	78558126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_78545950_78551977_78552579_78555590_78555792_78556891
transcript_121745.known	chr7	-	3358	5	FSM	ENSMUSG00000030606.9	ENSMUST00000206092.2	3358	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	1.87082869338697	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGATCTCTTCCAATGTC	2275	False	NA	NA	False	AATAGA	-44	NA	78780766	78764849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_78767242_78767596_78767900_78771394_78771764_78773117_78773300_78780654
transcript_121748.known	chr7	-	2125	10	FSM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_6	379.595691346581	1408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTGTGCCTCCTCATT	NA	False	NA	-6	True	AATACA	-18	NA	78798808	78783516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
transcript_121755.known	chr7	-	2008	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	0	0	0	0	multi-exon	TRUE	canonical	3	790	junction_6	144.155948541848	3891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	-5	True	AATACA	-19	NA	78798801	78783515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
transcript_121767.known	chr7	+	6877	11	FSM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	6.39140047250992	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTGTATGTGCTCTGTG	2722	False	NA	22	True	ATTAAA	-17	NA	78922946	79015256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_78923088_78944255_78944356_78946755_78946956_78973216_78973393_78975181_78975350_78998007_78998192_79000498_79000592_79003737_79003849_79005549_79005620_79007812_79007898_79009707
transcript_121784.known	chr7	+	4645	38	FSM	ENSMUSG00000039187.17	ENSMUST00000036865.13	4645	38	0	0	0	0	multi-exon	TRUE	canonical	3	260	junction_14	37.7798783892034	406	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTAGTTTTGAAAAT	NA	False	NA	12	True	AATAAA	-13	NA	79042059	79100012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79042140_79045640_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
transcript_121808.known	chr7	-	7837	23	FSM	ENSMUSG00000039176.18	ENSMUST00000073889.14	7837	23	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_20	45.8324292422727	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTTTTGATCATGGTG	NA	False	NA	2	True	NA	NA	NA	79116110	79095978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79099786_79100232_79100394_79101289_79101499_79101607_79101777_79101854_79101978_79103452_79103700_79103786_79103923_79104341_79104460_79104558_79104613_79105182_79105344_79105788_79105897_79106182_79106261_79106455_79106577_79107921_79108159_79108921_79109049_79109184_79109334_79109436_79109620_79109805_79109886_79110010_79110158_79110263_79110429_79111445_79111642_79114351_79115120_79115817
transcript_121820.known	chr7	-	4589	22	FSM	ENSMUSG00000039176.18	ENSMUST00000127082.8	4589	22	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_19	46.6152778280268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTACTGATATTATT	NA	False	NA	-7	True	TATAAA	-19	NA	79115935	79099129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79099786_79100232_79100394_79101289_79101499_79101607_79101978_79103452_79103700_79103786_79103923_79104341_79104460_79104558_79104613_79105182_79105344_79105788_79105897_79106182_79106261_79106455_79106577_79107921_79108159_79108921_79109049_79109184_79109334_79109436_79109620_79109805_79109886_79110010_79110158_79110263_79110429_79111445_79111642_79114351_79115120_79115817
transcript_121848.nnic	chr7	-	778	3	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_2	2	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAGCCAAAAATATACT	NA	False	NA	NA	False	NA	NA	NA	79048272	79046181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr7_-_79046493_79047383_79047471_79047892
transcript_121852.known	chr7	-	2279	1	FSM	ENSMUSG00000039176.18	ENSMUST00000201557.2	2279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-40	NA	79115942	79113663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79113700_79115900
transcript_121855.known	chr7	+	479	4	FSM	ENSMUSG00000097023.9	ENSMUST00000182317.2	479	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.16024689946929	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCCAAAGCCACAGGATGA	NA	False	NA	NA	False	NA	NA	NA	79165182	79181007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79165421_79173664_79173725_79177510_79177618_79180933
transcript_121856.nnic	chr7	+	2059	3	NIC	ENSMUSG00000097023.9	novel	479	4	NA	NA	-105	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	3.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTCTTGTTTGTATAT	NA	False	NA	NA	False	AATAAA	-16	NA	79164874	79182339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_79165421_79177510_79177618_79180933
transcript_121857.known	chr7	+	1847	2	FSM	ENSMUSG00000097023.9	ENSMUST00000180881.3	1847	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTCTTGTTTGTATAT	NA	False	NA	NA	False	AATAAA	-16	NA	79164979	79182339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79165421_79180933
transcript_121858.known	chr7	+	5094	2	FSM	ENSMUSG00000108616.2	ENSMUST00000206829.2	5094	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCACATCCCTCTGAGT	NA	False	NA	NA	False	AATAAA	-21	NA	79185790	79209781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79185945_79204841
transcript_121860.known	chr7	+	7199	22	FSM	ENSMUSG00000046591.11	ENSMUST00000035977.9	7199	22	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_6	27.6640028223357	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTATTACTTTCCCAGTT	1924	False	NA	16	True	ATTAAA	-26	NA	79309943	79347896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019_79325157_79326974_79327194_79328762_79328915_79330655_79330757_79331557_79331652_79331737_79331818_79331996_79332225_79332703_79332801_79333951_79334010_79335524_79335687_79337973_79338065_79339655_79339715_79340619_79340752_79341569_79341728_79343448_79345571_79345682_79345809_79346401
transcript_121863.known	chr7	-	4093	19	FSM	ENSMUSG00000050382.15	ENSMUST00000184137.2	4093	19	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	12.416262732679	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTCCAGTCCTGCTGAG	NA	False	NA	NA	False	NA	NA	NA	79365417	79348275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79348664_79348897_79349045_79349134_79349334_79349929_79350137_79350696_79350913_79351853_79352028_79352200_79352327_79352526_79352725_79354374_79354578_79356483_79356637_79356736_79356853_79357267_79357426_79358169_79358389_79358913_79359031_79359792_79360313_79360450_79360845_79361160_79361362_79363578_79363931_79365412
transcript_121868.nic	chr7	+	2069	7	NIC	ENSMUSG00000046591.11	novel	3655	20	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	91.3699744020005	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGGAAACTAAAGGCAAA	1884	False	NA	NA	False	AATAAA	-17	NA	79309903	79325461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019_79325157_79325257
transcript_121869.nic	chr7	+	2152	6	ISM	ENSMUSG00000046591.11	ENSMUST00000206591.2	3655	20	-73	18220	-22	0	5prime_fragment	FALSE	canonical	3	244	junction_2	18.3847763108502	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGGAAACTAAAGGCAAA	1902	False	NA	NA	False	AATAAA	-17	NA	79309921	79325461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019
transcript_121870.known	chr7	+	1452	1	FSM	ENSMUSG00000046591.11	ENSMUST00000205750.2	1452	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	1950	False	NA	NA	False	NA	NA	NA	79309969	79311421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79310000_79311400
transcript_121871.known	chr7	-	4524	18	FSM	ENSMUSG00000050382.15	ENSMUST00000178048.8	4524	18	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	9.35904351425561	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGGCTTACATCTTAAA	NA	False	NA	-1	True	AATAAA	-14	NA	79363934	79347846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79348664_79348897_79349045_79349134_79349334_79349929_79350137_79350696_79350913_79351853_79352031_79352200_79352327_79352526_79352725_79354374_79354578_79356483_79356637_79356736_79356853_79357267_79357426_79358169_79358389_79358913_79359031_79359792_79360313_79360450_79360845_79361160_79361362_79363578
transcript_121872.known	chr7	-	2241	3	FSM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCGTCTGTGAGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	79392828	79385704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79387659_79389912_79390029_79392657
transcript_121874.known	chr7	-	1044	2	FSM	ENSMUSG00000030545.10	ENSMUST00000150606.2	1044	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATGAAAGACCCAAAGAAAC	NA	False	NA	NA	False	AATAAA	-19	NA	79392879	79386836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79387659_79392657
transcript_121879.known	chr7	+	1944	2	FSM	ENSMUSG00000030543.11	ENSMUST00000107394.3	1944	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCTTCTGATTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	79460474	79463187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79461508_79462276
transcript_121880.known	chr7	-	3797	21	FSM	ENSMUSG00000039062.16	ENSMUST00000107392.8	3797	21	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	3.71853465763061	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCCAGACTTGTCACTCA	6800	False	NA	-1	True	AATAAA	-16	NA	79497958	79471550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79472125_79475050_79475133_79475453_79475595_79476339_79476508_79476618_79476730_79477319_79477412_79483334_79483483_79484877_79484934_79485034_79485169_79485716_79485791_79485978_79486155_79487989_79488056_79488160_79488227_79488394_79488539_79488635_79488750_79488910_79489066_79489149_79489277_79490620_79490758_79490833_79490977_79491385_79492409_79497892
transcript_121881.nnic	chr7	-	5101	7	NNC	ENSMUSG00000063801.8	novel	5813	6	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.726365273589	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTGGCCATGCATTTC	NA	False	NA	-2	True	AATAAA	-14	NA	79570407	79525072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_79527736_79528457_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
transcript_121883.nnic	chr7	-	3068	7	NNC	ENSMUSG00000063801.8	novel	5813	6	NA	NA	-10	-2033	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.726365273589	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGGAATTAGATTCAG	NA	False	NA	NA	False	NA	NA	NA	79570407	79527105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_79527736_79528457_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
transcript_121884.nnic	chr7	-	2678	7	NNC	ENSMUSG00000063801.8	novel	5813	6	NA	NA	-10	-2423	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.726365273589	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAATACATTTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	79570407	79527495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_79527736_79528457_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
transcript_121886.known	chr7	-	5813	6	FSM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	30.5653398476117	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTGGCCATGCATTTC	NA	False	NA	-2	True	AATAAA	-14	NA	79570397	79525072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
transcript_121893.known	chr7	-	2277	6	FSM	ENSMUSG00000039043.6	ENSMUST00000048731.6	2277	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	5.76194411635517	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGACTGAGGCTTTGAGG	9893	False	NA	NA	False	NA	NA	NA	79585107	79575108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79576599_79577373_79577538_79577919_79578127_79579320_79579454_79581550_79581627_79584900
transcript_121898.known	chr7	+	3606	6	FSM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	149.360503480673	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACCTACCCGGCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	79674581	79741578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181_79736357_79738282_79738381_79740082
transcript_121908.known	chr7	+	5871	5	FSM	ENSMUSG00000048897.16	ENSMUST00000164056.9	5871	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	112.192635676322	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGGCAAGCCTGAGCGGG	NA	False	NA	NA	False	NA	NA	NA	79674561	79743921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181_79736357_79740082
transcript_121910.known	chr7	+	4721	5	FSM	ENSMUSG00000048897.16	ENSMUST00000049680.10	4721	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	128.705817661829	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGACTGTACGTGCTTCTT	NA	False	NA	18	True	AATAAA	-18	NA	79675784	79742497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79676232_79730796_79732289_79735698_79735891_79736181_79736357_79740082
transcript_121914.nic	chr7	+	2344	4	ISM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	-94	4984	-74	0	5prime_fragment	TRUE	canonical	3	198	junction_1	67.6214955961983	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACACGTTGAGTGCTGT	NA	False	NA	1	True	AATAAA	-9	NA	79674487	79736594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181
transcript_121915.known	chr7	+	2194	4	FSM	ENSMUSG00000048897.16	ENSMUST00000206039.2	2194	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	115.519118186847	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACACGTTGAGTGCTGT	NA	False	NA	1	True	AATAAA	-9	NA	79676134	79736594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79676232_79730796_79732289_79735698_79735891_79736181
transcript_121933.known	chr7	-	1745	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	0	0	0	0	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	1316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	-5	True	AAAAAG	-13	NA	79765140	79744593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
transcript_121948.nic	chr7	-	2142	10	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	1495	junction_4	203.626988921616	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	-5	True	AAAAAG	-13	NA	79765120	79744593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
transcript_121955.nic	chr7	-	2402	9	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	21	0	intron_retention	FALSE	canonical	3	1616	junction_4	183.33980575696	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	-5	True	AAAAAG	-13	NA	79765119	79744593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
transcript_121972.known	chr7	+	3949	15	FSM	ENSMUSG00000030539.14	ENSMUST00000032754.9	3949	15	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	17.3394972033593	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGAGGCTCTCCTTTGCTT	NA	False	NA	-50	True	AATATA	-15	NA	79836588	79876275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79836740_79848266_79848519_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
transcript_121976.known	chr7	-	772	7	FSM	ENSMUSG00000030538.16	ENSMUST00000206084.2	772	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	282.60317683203	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2299	False	NA	-12	True	AATAAA	-15	NA	79882313	79876906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878282_79880063_79880173_79882091_79882127_79882257
transcript_121978.nic	chr7	-	945	6	NIC	ENSMUSG00000030538.16	novel	1047	7	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	305.980130073833	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2106	False	NA	-12	True	AATAAA	-15	NA	79882506	79876906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882257
transcript_121980.nic	chr7	-	915	6	ISM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	54	685	-28	0	5prime_fragment	FALSE	canonical	3	721	junction_1	52.8446780669539	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGACTTTTGAACTTCT	2105	False	NA	NA	False	NA	NA	NA	79882507	79877579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
transcript_121981.known	chr7	-	702	5	FSM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	297.709904941035	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79882257
transcript_121985.known	chr7	-	1150	2	FSM	ENSMUSG00000030538.16	ENSMUST00000144295.2	1150	2	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGCAGTCCTGGGCAAG	2133	False	NA	NA	False	NA	NA	NA	79882479	79881198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79882127_79882257
transcript_121986.known	chr7	-	1016	1	FSM	ENSMUSG00000030538.16	ENSMUST00000206618.2	1016	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGCTAAGAAT	2283	False	NA	NA	False	NA	NA	NA	79882329	79881313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79881300_79882300
transcript_121987.known	chr7	+	4189	2	FSM	ENSMUSG00000050973.12	ENSMUST00000062915.9	4189	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	79882612	79891809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79882954_79887961
transcript_121997.nic	chr7	+	2973	3	ISM	ENSMUSG00000045467.14	ENSMUST00000205270.2	2723	14	9024	-145	9024	-6	intron_retention	FALSE	canonical	2	15	junction_2	1.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGCGCGTGCTGTACCT	NA	False	NA	NA	False	ATTAAA	-14	NA	79906159	79910563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_79906779_79907924_79908106_79908390
transcript_122.known	SIRV4	-	670	4	FSM	SIRV4A	SIRV403	670	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3065.46367708958	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15122	8322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4_-_8373_8629_8991_13672_13829_15019
transcript_122000.known	chr7	+	1317	3	FSM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_2	14	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910962	79915122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79911172_79911568_79911680_79914125
transcript_122001.known	chr7	+	1709	2	FSM	ENSMUSG00000047084.9	ENSMUST00000138005.2	1709	2	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910967	79915122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79911680_79914125
transcript_122004.known	chr7	+	2554	23	FSM	ENSMUSG00000030534.14	ENSMUST00000150585.8	2554	23	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	27.6695375058045	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTTTGTTTTTT	NA	False	NA	11	True	AATAAA	-15	NA	79919426	79941321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929782_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
transcript_122009.nic	chr7	+	3006	15	NIC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_13	288.475240333922	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944177	79966002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79963274_79963317_79964861
transcript_122010.known	chr7	+	3008	15	FSM	ENSMUSG00000038943.17	ENSMUST00000174172.8	3008	15	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_13	238.868890688544	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944252	79966002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
transcript_122014.known	chr7	+	2912	14	FSM	ENSMUSG00000038943.17	ENSMUST00000173824.8	2912	14	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_13	177.415201846273	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	10	True	AATAAA	-20	NA	79944226	79965999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
transcript_122016.known	chr7	+	3016	14	FSM	ENSMUSG00000038943.17	ENSMUST00000047558.14	3016	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_11	336.527023981466	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	18	True	AATAAA	-28	NA	79944198	79966007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960920_79961964_79962076_79962779_79962957_79964861
transcript_122031.known	chr7	-	3336	9	FSM	ENSMUSG00000038930.12	ENSMUST00000047362.11	3336	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	12.4197423483742	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTGCACACCAGAAG	NA	False	NA	NA	False	ATTAAA	-8	NA	79974172	79965337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79969839_79969962_79970049_79970447_79970609_79970930_79971024_79971092_79973497
transcript_122037.nic	chr7	+	823	5	ISM	ENSMUSG00000038943.17	ENSMUST00000172911.8	3143	11	-35	7895	-20	231	5prime_fragment	FALSE	canonical	3	974	junction_3	41.8591387871275	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGTCTGCTCGAATTGT	NA	False	NA	NA	False	NA	NA	NA	79944177	79954599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428
transcript_122038.known	chr7	+	595	4	FSM	ENSMUSG00000038943.17	ENSMUST00000206178.2	595	4	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_3	48.0578355271599	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGAAACCTCATAGACCT	NA	False	NA	NA	False	NA	NA	NA	79944260	79954368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108
transcript_122039.known	chr7	+	3645	3	FSM	ENSMUSG00000038943.17	ENSMUST00000173914.3	3645	3	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_1	8	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAGGAGAGAAAGCAG	NA	False	NA	NA	False	AAAAAG	-34	NA	79944221	79954178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79944340_79950048_79950182_79950784
transcript_122041.known	chr7	-	6554	24	FSM	ENSMUSG00000038886.11	ENSMUST00000098346.5	6554	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_22	14.6847142211905	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGTGCAGTGAAGTTAC	4001	False	NA	-1	True	AATAAA	-20	NA	80021123	79998844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80001600_80002673_80002782_80002909_80003111_80006089_80006227_80007990_80008133_80008657_80008792_80009027_80009143_80009383_80009507_80010643_80010881_80012046_80012213_80012356_80012425_80012636_80012752_80012901_80013085_80013214_80013418_80013675_80013854_80016616_80016804_80017058_80017233_80017444_80017573_80017961_80018134_80018253_80018399_80018467_80018726_80019340_80019494_80020479_80020678_80020849
transcript_122046.known	chr7	-	3260	20	FSM	ENSMUSG00000030533.17	ENSMUST00000032748.15	3260	20	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_19	11.9833679753749	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATCTGTTTGTTGTTG	NA	False	NA	NA	False	AATAAA	-13	NA	79989967	79975042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_79975626_79975760_79975917_79976056_79976175_79977330_79977447_79977665_79977780_79978200_79978268_79978440_79978569_79978769_79978911_79979253_79979396_79980085_79980181_79981300_79981602_79982724_79982897_79983767_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989816
transcript_122047.nic	chr7	-	3292	20	NIC	ENSMUSG00000030533.17	novel	3932	22	NA	NA	-74	0	combination_of_known_junctions	TRUE	canonical	3	31	junction_19	16.1947975641576	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTGTTTGTTGTTGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	79990041	79975039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_79975626_79975760_79975917_79976056_79976175_79977330_79977447_79977665_79977780_79978200_79978268_79978440_79978569_79978769_79978911_79979253_79979396_79980085_79980181_79981300_79981602_79982724_79982897_79983767_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989861
transcript_122057.known	chr7	+	1510	4	FSM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.490737563232	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGGCTTCTTAAATC	NA	False	NA	NA	False	AATAAA	-21	NA	79992851	79996462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_79992998_79993286_79993343_79993463_79993705_79995395
transcript_122065.known	chr7	-	2707	18	FSM	ENSMUSG00000053158.11	ENSMUST00000206728.2	2707	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	5.21244186279429	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGTTCATCGGGTGATA	NA	False	NA	-19	True	AATAAA	-5	NA	80037167	80027520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565_80029661_80029956_80030076_80030586_80030641_80030912_80031036_80031348_80031559_80032060_80032139_80032268_80032456_80032558_80032682_80032817_80032938_80033016_80033155_80033581_80033766_80033938_80034036_80036558_80036733_80036869
transcript_122067.known	chr7	-	4286	16	FSM	ENSMUSG00000030530.16	ENSMUST00000122232.8	4286	16	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_15	14.0469055508876	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGTCTCCAGTGTCTAT	3679	False	NA	0	True	ATTAAA	-22	NA	80052510	80038941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80041045_80041255_80041367_80041475_80041601_80041934_80042115_80042217_80042336_80042421_80042526_80042631_80042733_80043156_80043370_80045082_80045256_80045707_80045797_80046676_80046754_80046869_80046999_80047645_80047742_80047842_80047942_80048341_80048677_80052277
transcript_122070.known	chr7	-	4598	22	FSM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_6	41.4509518092853	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGGAAGGCAGCATGGG	NA	False	NA	66	True	NA	NA	NA	80184867	80104740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80162526_80163243_80164336_80164439_80184790
transcript_122074.nic	chr7	-	651	3	ISM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	-19	58049	-19	-38904	5prime_fragment	FALSE	canonical	3	378	junction_1	9.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTAAGAGAAACTTCTTTA	NA	False	NA	NA	False	AATGAA	-4	NA	80184886	80162789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_80163243_80164336_80164439_80184790
transcript_122075.known	chr7	-	5115	15	FSM	ENSMUSG00000030527.16	ENSMUST00000122255.8	5115	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	5.85757838102026	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGGTGTTTCTCTTCAGC	1597	False	NA	NA	False	ATTAAA	-26	NA	80338625	80236374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80239700_80240109_80240213_80242263_80242345_80242425_80242627_80245357_80245657_80248494_80248713_80254098_80254149_80255495_80255582_80259644_80259681_80266212_80266314_80268341_80268405_80270269_80270332_80279367_80279488_80327093_80327193_80338354
transcript_122077.known	chr7	-	4446	2	FSM	ENSMUSG00000030527.16	ENSMUST00000152668.2	4446	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAATTTAAAAAGT	1597	False	NA	NA	False	NA	NA	NA	80338625	80323017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80327193_80338354
transcript_122078.known	chr7	-	7444	38	FSM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_37	55.7931586507513	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTATTTTTCTTGGTT	NA	False	NA	-9	True	AATAAA	-19	NA	80453164	80361330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80363694_80366758_80366868_80370616_80370740_80372709_80372877_80373526_80373740_80375334_80375423_80375713_80375850_80376486_80376590_80377700_80377834_80378596_80378830_80379816_80379902_80379989_80380131_80383733_80383959_80385221_80385386_80386009_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
transcript_122102.known	chr7	-	2307	11	FSM	ENSMUSG00000030536.11	ENSMUST00000205824.2	2307	11	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_10	45.6487677818361	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAACAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	80453029	80404868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
transcript_122104.known	chr7	-	2803	1	FSM	ENSMUSG00000030536.11	ENSMUST00000205383.2	2803	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9746	False	NA	NA	False	NA	NA	NA	80393628	80390825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80390800_80393600
transcript_122105.known	chr7	-	3367	2	FSM	ENSMUSG00000030536.11	ENSMUST00000205540.2	3367	2	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACATTCAACAG	NA	False	NA	NA	False	NA	NA	NA	80453020	80446462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80449698_80452888
transcript_122106.known	chr7	+	699	3	FSM	ENSMUSG00000038797.14	ENSMUST00000132163.8	699	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAGACATGTTTGAGG	2888	False	NA	NA	False	NA	NA	NA	80510667	80524717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_80510826_80512912_80513420_80524683
transcript_122107.known	chr7	+	1582	3	FSM	ENSMUSG00000038797.14	ENSMUST00000147125.2	1582	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCTTCAGCCAGAGCTC	2921	False	NA	NA	False	NA	NA	NA	80510700	80525636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_80510826_80512915_80513420_80524683
transcript_122109.known	chr7	-	2114	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGTGTGTATGAGT	NA	False	NA	-3	True	AATAAA	-16	NA	80551017	80540470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
transcript_122114.known	chr7	-	2549	7	FSM	ENSMUSG00000025722.17	ENSMUST00000139990.8	2549	7	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_4	7.94599829404014	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTGTGTGTATGAG	NA	False	NA	-4	True	AATAAA	-15	NA	80550980	80540471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
transcript_122116.known	chr7	-	3142	7	FSM	ENSMUSG00000025722.17	ENSMUST00000152518.8	3142	7	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_6	17.3365381652611	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTGTGTGTATGAG	NA	False	NA	-4	True	AATAAA	-15	NA	80550980	80540471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
transcript_122121.nic	chr7	-	1478	7	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	-1	-10	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	46.1173021278951	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATACAAGTAAGAAGCAAT	NA	False	NA	-17	True	AATAAA	-10	NA	80551018	80541018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80550095_80550185_80550391_80550460_80550932
transcript_122123.known	chr7	-	3080	6	FSM	ENSMUSG00000025722.17	ENSMUST00000135905.8	3080	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	8.49941174435031	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAATTAGCAATTTA	NA	False	NA	-7	True	AATAAA	-20	NA	80550982	80541008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
transcript_122124.known	chr7	-	785	6	FSM	ENSMUSG00000025722.17	ENSMUST00000133979.8	785	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	59.805016511995	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGCTTGGCTATTTCAG	NA	False	NA	NA	False	NA	NA	NA	80550967	80542743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80543090_80543396_80543562_80547670_80547736_80550095_80550202_80550391_80550460_80550932
transcript_122127.nic	chr7	-	1930	6	NIC	ENSMUSG00000025722.17	novel	2549	7	NA	NA	-5	-10	intron_retention	FALSE	canonical	3	13	junction_4	49.9935995903476	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATACAAGTAAGAAGCAAT	NA	False	NA	-17	True	AATAAA	-10	NA	80550997	80541018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80550095_80550185_80550391
transcript_122129.known	chr7	-	728	7	FSM	ENSMUSG00000025724.13	ENSMUST00000147881.8	728	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	452.296885045898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACACACGTTGGCACTTC	1654	False	NA	NA	False	NA	NA	NA	80597259	80565510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80565653_80565922_80565981_80572094_80572133_80572848_80572969_80577484_80577635_80584774_80584885_80597149
transcript_122130.known	chr7	-	1345	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	1385	False	NA	-5	True	AATAAA	-18	NA	80597528	80565124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
transcript_122134.known	chr7	-	678	3	FSM	ENSMUSG00000025723.13	ENSMUST00000119428.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	6	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAATGTCTGGGCCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	80554808	80551981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80552247_80553881_80554055_80554568
transcript_122136.known	chr7	-	875	6	FSM	ENSMUSG00000025724.13	ENSMUST00000120285.8	875	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	394.796859156706	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCTGCAAAGGCAAGAGCT	1652	False	NA	NA	False	NA	NA	NA	80597261	80557463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80557789_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
transcript_122138.known	chr7	+	7297	10	FSM	ENSMUSG00000005621.12	ENSMUST00000107353.3	7297	10	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	16.7715220125451	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTCATGTTCTGAAGCCT	NA	False	NA	NA	False	NA	NA	NA	80643428	80694912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_80643511_80659181_80659288_80673018_80675258_80679196_80679376_80687097_80687275_80687552_80687713_80687811_80688100_80688300_80688414_80688877_80689014_80691095
transcript_122139.known	chr7	+	6369	14	FSM	ENSMUSG00000038763.13	ENSMUST00000107348.2	6369	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	8.19438399112971	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGGTGTGATGATTAT	NA	False	NA	22	True	AATAAA	-34	NA	80707347	80755360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_80707521_80713696_80713736_80717626_80717749_80726620_80726739_80727293_80728582_80741894_80743933_80744654_80744803_80745149_80745278_80745405_80745442_80748494_80748770_80749918_80750008_80750655_80750880_80753092_80753142_80753718
transcript_122143.known	chr7	+	2846	18	FSM	ENSMUSG00000025726.12	ENSMUST00000026820.11	2846	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	56.988677318925	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	NA	False	NA	11	True	AATAAA	-20	NA	80764546	80820164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_80764626_80765270_80765383_80766232_80766322_80767348_80767441_80771794_80771979_80774615_80774758_80775908_80776023_80777459_80777538_80787909_80787991_80791711_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
transcript_122148.nic	chr7	+	2087	9	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	26902	0	26902	0	3prime_fragment	FALSE	canonical	3	108	junction_1	7.38135319572231	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	9911	False	NA	11	True	AATAAA	-20	NA	80791499	80820164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
transcript_122153.nnic	chr7	+	1883	8	NIC	ENSMUSG00000025726.12	novel	2846	18	NA	NA	26980	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	42.0490481340493	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	9989	False	NA	11	True	AATAAA	-20	NA	80791577	80820164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_80791793_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
transcript_122159.known	chr7	+	3802	22	FSM	ENSMUSG00000025584.18	ENSMUST00000026672.8	3802	22	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_8	20.0953509362663	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTTGTTGCCATTTCTT	1107	False	NA	7	True	ATTAAA	-18	NA	80863343	80984281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_80863837_80930925_80930983_80932570_80932762_80941984_80942042_80942879_80942935_80945425_80945515_80950387_80950467_80951902_80952041_80956442_80956532_80958552_80958605_80958686_80958730_80964857_80964936_80966709_80966781_80967033_80967196_80968815_80968865_80969070_80969207_80970399_80970599_80973763_80973982_80975998_80976129_80977775_80977944_80982617_80982748_80983163
transcript_122165.nic	chr7	+	1554	9	ISM	ENSMUSG00000025584.18	ENSMUST00000026672.8	3802	22	-360	27804	-360	-8458	5prime_fragment	FALSE	canonical	3	151	junction_8	22.61083810919	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAGATAACATACAGCAAA	747	False	NA	NA	False	AAGAAA	-3	NA	80862983	80956477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_80863837_80930925_80930983_80932570_80932762_80941984_80942042_80942879_80942935_80945425_80945515_80950387_80950467_80951902_80952041_80956442
transcript_122168.known	chr7	-	494	5	FSM	ENSMUSG00000061787.16	ENSMUST00000080813.5	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	8882	junction_4	1855.19963548401	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80995002	80992480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604_80994757_80994949
transcript_122169.known	chr7	-	383	5	FSM	ENSMUSG00000061787.16	ENSMUST00000208054.2	383	5	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_3	5279.89450652189	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGTCTGTATTGTTCT	NA	False	NA	-12	True	AATAAA	-10	NA	80994975	80992482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994686_80994757_80994949
transcript_122172.known	chr7	-	660	4	FSM	ENSMUSG00000061787.16	ENSMUST00000134425.8	660	4	0	0	0	0	multi-exon	FALSE	canonical	3	12924	junction_1	185.347121789241	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAAGTTTGTCTGTATT	NA	False	NA	-17	True	AATAAA	-5	NA	80994982	80992487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604
transcript_122175.known	chr7	-	1777	12	FSM	ENSMUSG00000025586.18	ENSMUST00000178892.3	1777	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_10	20.1469805788927	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCAACTCGCTGCACAG	NA	False	NA	NA	False	NA	NA	NA	81104423	80998027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006641_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021952_81085950_81086126_81104381
transcript_122178.nic	chr7	-	3196	12	NIC	ENSMUSG00000025586.18	novel	2969	11	NA	NA	-102	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	10.3116719552358	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTAGTTTTGTCTCTG	NA	False	NA	-2	True	AATAAA	-13	NA	81104608	80996775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006656_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104381
transcript_122179.nic	chr7	-	3255	12	NIC	ENSMUSG00000025586.18	novel	2969	11	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_11	18.2548533114207	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTAGTTTTGTCTCTG	NA	False	NA	-2	True	AATAAA	-13	NA	81105245	80996775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006656_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104959
transcript_122186.nic	chr7	-	3720	26	NIC	ENSMUSG00000062444.16	novel	3806	26	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_25	13.1209755734854	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTCACCTTTCCTTC	NA	False	NA	1	True	AATAAA	-17	NA	81139617	81110146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81139285
transcript_122187.known	chr7	-	3806	26	FSM	ENSMUSG00000062444.16	ENSMUST00000082090.15	3806	26	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_25	15.5434873821804	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTCACCTTTCCTTC	7640	False	NA	1	True	AATAAA	-17	NA	81143673	81110146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81143255
transcript_1222.known	chr1	+	1049	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGTTTGAACATGTTT	NA	False	NA	10	True	ATTAAA	-23	NA	39406922	39410992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
transcript_122201.known	chr7	-	522	6	FSM	ENSMUSG00000061877.14	ENSMUST00000073406.12	522	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.09544511501033	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTAGGATGTTGGAGGTT	3284	False	NA	NA	False	ATTAAA	-16	NA	81148029	81144022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81144127_81144873_81145004_81145326_81145529_81145890_81145909_81146597_81146616_81147979
transcript_122202.known	chr7	-	640	6	FSM	ENSMUSG00000061877.14	ENSMUST00000144156.2	640	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.49799919935936	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTAGGATGTTGGAGGTT	3284	False	NA	NA	False	ATTAAA	-16	NA	81148029	81144022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81144127_81144873_81145122_81145326_81145529_81145890_81145909_81146597_81146616_81147979
transcript_122205.known	chr7	+	725	4	FSM	ENSMUSG00000097277.8	ENSMUST00000180879.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	29.9777695412228	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAAAATTTTTTGGGTAT	NA	False	NA	4	True	AATAAA	-9	NA	81173318	81181242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81173425_81178534_81178689_81179094_81179276_81180958
transcript_122206.nic	chr7	+	800	4	NIC	ENSMUSG00000097277.8	novel	725	4	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	41.2148840428633	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTGGGTATTATG	NA	False	NA	8	True	AATAAA	-13	NA	81173294	81181246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_81173472_81178534_81178689_81179094_81179276_81180958
transcript_122207.known	chr7	+	720	4	FSM	ENSMUSG00000097277.8	ENSMUST00000181492.2	720	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	41.0446910899164	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTGGGTATTATG	NA	False	NA	8	True	AATAAA	-13	NA	81178539	81181246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81178689_81178904_81179007_81179094_81179276_81180958
transcript_122213.known	chr7	+	3069	10	FSM	ENSMUSG00000045795.11	ENSMUST00000165460.2	3069	10	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_8	9.86576572463249	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTCGTTTCCAGAGGCC	6984	False	NA	NA	False	ATTAAA	-15	NA	81221039	81246584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81221658_81224293_81224468_81227898_81228050_81234849_81235020_81235881_81236048_81239085_81239274_81241509_81241597_81241754_81241851_81243399_81243869_81245634
transcript_122220.known	chr7	+	1563	7	FSM	ENSMUSG00000045795.11	ENSMUST00000207123.2	1563	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	24.989442215108	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGCACCTGAGAACAATT	6958	False	NA	NA	False	NA	NA	NA	81221013	81241596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81221658_81224293_81224451_81227898_81228050_81234849_81235020_81235881_81236048_81239085_81239274_81241509
transcript_122223.known	chr7	-	1736	9	FSM	ENSMUSG00000025813.15	ENSMUST00000026922.15	1736	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	3.99804639792987	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	81356692	81259477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81260190_81261053_81261135_81262008_81262120_81264090_81264248_81268323_81268431_81273999_81274093_81286108_81286241_81299301_81299459_81356506
transcript_122225.known	chr7	-	1634	9	FSM	ENSMUSG00000025813.15	ENSMUST00000207983.2	1634	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	5.73230974389905	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	81356557	81259477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81260190_81261053_81261135_81262008_81262120_81264090_81264248_81268323_81268464_81273999_81274093_81286108_81286241_81299301_81299459_81356506
transcript_122231.known	chr7	+	1452	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	195	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAGTTTTGACAGCCC	NA	False	NA	NA	False	AATAAA	-30	NA	81412672	81419239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81412805_81417274_81417472_81418116
transcript_122235.nnic	chr7	-	3184	9	NNC	ENSMUSG00000025103.9	novel	3001	8	NA	NA	-76	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_4	316.438555449553	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGTCACCTCTCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	81479255	81441821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_81443475_81443905_81444053_81446743_81446832_81450132_81450240_81450705_81450899_81455489_81455688_81465662_81465769_81467942_81468100_81478720
transcript_122240.known	chr7	-	3001	8	FSM	ENSMUSG00000025103.9	ENSMUST00000026093.9	3001	8	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_4	90.4076933695809	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGTCACCTCTCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	81479179	81441821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81443475_81443905_81444053_81446743_81446832_81450705_81450899_81455489_81455688_81465662_81465769_81467942_81468100_81478720
transcript_122245.nic	chr7	-	1277	6	ISM	ENSMUSG00000025103.9	ENSMUST00000026093.9	3001	8	-76	4922	-76	-3481	5prime_fragment	FALSE	canonical	3	689	junction_2	99.0082824818207	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATCCCCTCTCTGTTAGC	NA	False	NA	NA	False	AATATA	-4	NA	81479255	81446743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_81446832_81450705_81450899_81455489_81455688_81465662_81465769_81467942_81468100_81478720
transcript_122251.nnic	chr7	-	792	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	-17	1899	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	126.089254102005	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGCCTACAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	81439243	81430030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439102
transcript_122257.known	chr7	-	887	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439226	81431929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
transcript_122266.known	chr7	-	504	4	FSM	ENSMUSG00000025102.15	ENSMUST00000152620.2	504	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	92.1604880388312	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTCTACAACTCCAGAGG	NA	False	NA	NA	False	NA	NA	NA	81439213	81432851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81432887_81435824_81435953_81438197_81438325_81438999
transcript_122270.known	chr7	+	2226	10	FSM	ENSMUSG00000038623.10	ENSMUST00000041890.8	2226	10	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_7	3.33703498170693	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTTTATTAATTTTGAAG	NA	False	NA	NA	False	AATAAA	-25	NA	81508748	81533819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81509289_81512897_81513002_81514994_81515093_81518388_81518493_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
transcript_122272.known	chr7	+	1066	10	FSM	ENSMUSG00000038623.10	ENSMUST00000119543.2	1066	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.07565471755214	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTCTCTCTGACCTGTT	NA	False	NA	NA	False	AATAAA	-13	NA	81512434	81533167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81512467_81512897_81513002_81514994_81515093_81518388_81518493_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
transcript_122275.known	chr7	+	3419	6	FSM	ENSMUSG00000038623.10	ENSMUST00000124616.8	3419	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	2.1540659228538	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAACCCTCTCTCTTCCT	NA	False	NA	NA	False	AATATA	-15	NA	81508767	81523625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81509289_81512897_81513002_81514994_81515093_81518388_81518493_81520444_81520528_81521116
transcript_122277.known	chr7	-	5887	6	FSM	ENSMUSG00000025104.14	ENSMUST00000107305.8	5887	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	4.22374241638857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTTGTGACTGTCAGAA	NA	False	NA	-2	True	AATAAA	-14	NA	81584221	81530998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81535832_81543546_81543694_81549421_81549578_81550032_81550172_81555307_81555385_81583686
transcript_122282.known	chr7	-	2320	4	FSM	ENSMUSG00000025104.14	ENSMUST00000149288.2	2320	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	4.10960933531265	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTCAGCTTCACAGTCAC	NA	False	NA	NA	False	AATAAA	-17	NA	81583771	81547558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_81549578_81550032_81550172_81555307_81555385_81583686
transcript_122283.nnic	chr7	-	1271	2	Intergenic	novelGene_3	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTATCTGCATTAATCATA	NA	False	NA	NA	False	AATAAA	-27	NA	81814548	81761686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Intergenic_chr7_-_81762785_81814375
transcript_122290.known	chr7	+	1486	9	FSM	ENSMUSG00000030638.14	ENSMUST00000177895.8	1486	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	89.2394951801051	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81824697	81956627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_122294.nnic	chr7	+	1697	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-30929	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	100.011249367259	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81889164	81956627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_81889439_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_122297.nnic	chr7	+	1584	8	NIC	ENSMUSG00000030638.14	novel	1647	9	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_2	114.240884064492	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81824533	81956627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_81824768_81909339_81909409_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_122300.known	chr7	+	1647	9	FSM	ENSMUSG00000030638.14	ENSMUST00000032874.14	1647	9	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_3	40.04040927613	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81824543	81956627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_122302.known	chr7	-	430	2	FSM	ENSMUSG00000038570.16	ENSMUST00000126478.2	430	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTTTTGTACCTATCC	NA	False	NA	0	True	AATAAA	-27	NA	82297736	82295375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_82295669_82297599
transcript_122304.known	chr7	+	3608	20	FSM	ENSMUSG00000038563.15	ENSMUST00000179489.8	3608	20	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	25.8006420500325	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTTTGTTTAATTAAT	NA	False	NA	38	True	AATAAA	-43	NA	82297821	82427060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
transcript_122305.known	chr7	+	3610	20	FSM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	22.1664566531058	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTTTGTTTAATTAAT	NA	False	NA	38	True	AATAAA	-43	NA	82297848	82427060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
transcript_122306.nic	chr7	+	2265	18	ISM	ENSMUSG00000038563.15	ENSMUST00000179489.8	3608	20	-48	15282	-48	-15282	5prime_fragment	FALSE	canonical	3	42	junction_1	26.3993813495722	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGCAAAGCAAAATCCC	NA	False	NA	NA	False	AAAAAG	-24	NA	82297773	82411778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642
transcript_122308.nic	chr7	+	2268	18	ISM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	-49	15282	-22	-15282	5prime_fragment	FALSE	canonical	3	73	junction_1	22.5609516597237	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGCAAAGCAAAATCCC	NA	False	NA	NA	False	AAAAAG	-24	NA	82297799	82411778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642
transcript_122309.known	chr7	+	2453	15	FSM	ENSMUSG00000038563.15	ENSMUST00000125245.8	2453	15	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	27.9482028190781	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCTACTGGTTTGCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	82297836	82347892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086
transcript_122320.known	chr7	+	3355	2	FSM	ENSMUSG00000057706.8	ENSMUST00000082237.7	3355	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTGCTACTTCATTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	82516540	82520723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_82517136_82517963
transcript_122329.known	chr7	+	2483	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGAGTTCCTCATTTA	NA	False	NA	NA	False	ATTAAA	-23	NA	83281166	83291536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
transcript_122334.known	chr7	+	897	5	FSM	ENSMUSG00000046027.18	ENSMUST00000150174.8	897	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_4	16.0837651064668	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGTGTACTGCCTGAGCT	NA	False	NA	NA	False	NA	NA	NA	83281223	83287283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811
transcript_122336.known	chr7	+	614	3	FSM	ENSMUSG00000038503.16	ENSMUST00000138803.8	614	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	656	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATCCCAAACCACGTGCT	NA	False	NA	NA	False	AATAAA	-32	NA	83533673	83547148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_83533864_83544737_83544971_83546957
transcript_122337.known	chr7	+	4492	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	0	0	0	0	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTATTCTGTGCGTGT	NA	False	NA	NA	False	TTTAAA	-41	NA	83541207	83550740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
transcript_122339.known	chr7	+	1109	3	FSM	ENSMUSG00000038503.16	ENSMUST00000153377.2	1109	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	654.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCATAGCAGATGACATT	NA	False	NA	NA	False	NA	NA	NA	83541537	83547288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_83542083_83544737_83544971_83546957
transcript_122342.known	chr7	-	2238	3	FSM	ENSMUSG00000038459.11	ENSMUST00000117085.2	2238	3	0	0	0	0	multi-exon	FALSE	canonical	3	1379	junction_1	80.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGTGGGCTTATGTGCTCC	NA	False	NA	-7	True	AATAAA	-18	NA	83801101	83758563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_83760010_83763458_83763639_83800489
transcript_122343.known	chr7	-	2580	1	FSM	ENSMUSG00000038459.11	ENSMUST00000208271.2	2580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAAGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	83800878	83798298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_83798300_83800900
transcript_122344.known	chr7	-	6151	19	FSM	ENSMUSG00000015709.10	ENSMUST00000085077.5	6151	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.23123173644702	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGCCTTGGACTGGCT	NA	False	NA	2	True	AATAAA	-20	NA	84059327	83895485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_83899363_83900573_83900711_83911600_83911752_83912386_83912526_83914782_83914883_83917112_83917237_83918046_83918120_83924542_83924695_83931304_83931380_83933200_83933336_83934981_83935059_83954004_83954091_83954401_83954468_83960080_83960184_83992949_83993164_83996549_83996764_84003727_84003776_84010761_84010877_84059062
transcript_122346.known	chr7	-	1585	14	FSM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_9	7.3524942432914	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTTCTTGGTTTTAGC	NA	False	NA	-4	True	AATAAA	-32	NA	84255150	84234366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
transcript_122352.known	chr7	-	1658	8	FSM	ENSMUSG00000030629.16	ENSMUST00000069537.3	1658	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	283.434475744953	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328559	84264261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84328517
transcript_122353.known	chr7	-	967	8	FSM	ENSMUSG00000030629.16	ENSMUST00000209165.2	967	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	270.713795702534	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGATCCAGAAGATTTG	NA	False	NA	NA	False	AAGAAA	-18	NA	84339091	84265048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84338953
transcript_122354.known	chr7	-	1538	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	230.002475832085	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328600	84264261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
transcript_122355.known	chr7	-	2955	7	FSM	ENSMUSG00000030629.16	ENSMUST00000209117.2	2955	7	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_5	69.5045961709648	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	AAGAAA	-41	NA	84339165	84262973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
transcript_122362.nic	chr7	-	750	6	ISM	ENSMUSG00000030629.16	ENSMUST00000209117.2	2955	7	-39	4125	-37	-1953	5prime_fragment	FALSE	canonical	3	577	junction_4	75.8435231249182	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCGCTGTTTCATGTGCA	NA	False	NA	NA	False	AAAACA	-7	NA	84339204	84267098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
transcript_122364.known	chr7	+	3753	18	FSM	ENSMUSG00000030562.18	ENSMUST00000032781.14	3753	18	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	3.12706679058871	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTGTGGAATTTCTA	NA	False	NA	NA	False	AATAAA	-15	NA	86895856	87047918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_86896111_86896695_86896792_86944991_86945103_86946662_86946748_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
transcript_122368.known	chr7	+	3749	18	FSM	ENSMUSG00000030562.18	ENSMUST00000126887.8	3749	18	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	3.42896273924463	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTGTGGAATTTCTA	NA	False	NA	NA	False	AATAAA	-15	NA	86895856	87047918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_86896111_86896695_86896792_86944995_86945103_86946662_86946748_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
transcript_122377.known	chr7	+	2493	7	FSM	ENSMUSG00000030560.18	ENSMUST00000032779.12	2493	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_5	18.6100331362771	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGTTGTGTGTCTTT	NA	False	NA	NA	False	AATAAA	-34	NA	87927292	87960096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_87927583_87930594_87930741_87946290_87946458_87948652_87948806_87951392_87951509_87957220_87957353_87958607
transcript_122379.known	chr7	+	3220	4	FSM	ENSMUSG00000030560.18	ENSMUST00000131108.9	3220	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	178.66417908716	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCACTGTGGCATTGTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	87927341	87940605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_87927583_87930594_87930741_87936101_87936187_87937857
transcript_122382.known	chr7	+	1577	3	FSM	ENSMUSG00000030559.9	ENSMUST00000107256.4	1577	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	4.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTAAGGTATTGGGATGT	NA	False	NA	NA	False	NA	NA	NA	88079480	88140780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_88079812_88099688_88099970_88139815
transcript_122383.known	chr7	-	453	1	FSM	ENSMUSG00000069972.7	ENSMUST00000182017.2	453	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1677	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGCTGTTGTGTGCACA	NA	False	NA	NA	False	NA	NA	NA	88180106	88179653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_88179700_88180100
transcript_122384.known	chr7	-	3700	15	FSM	ENSMUSG00000039428.12	ENSMUST00000041968.11	3700	15	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	15.7941154115276	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGGGTTTTATTTCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	88987995	88788921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_88791179_88792988_88793057_88793864_88793964_88797177_88797255_88800620_88800685_88803235_88803404_88805634_88805705_88808076_88808224_88814332_88814375_88845320_88845368_88893128_88893195_88929174_88929209_88953888_88953982_88956344_88956473_88987655
transcript_122389.known	chr7	+	6720	2	FSM	ENSMUSG00000049791.5	ENSMUST00000058755.5	6720	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTGTGCATTGGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	89053562	89062342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_89054180_89056239
transcript_122392.known	chr7	-	1053	6	FSM	ENSMUSG00000062797.15	ENSMUST00000078918.10	1053	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	509.123403508422	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTGAAATACCATTACA	NA	False	NA	-1	True	AATAAA	-18	NA	89590274	89567910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89579527_89579669_89584934_89585173_89590176
transcript_122396.known	chr7	-	2224	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTACCTTGACAGTGG	NA	False	NA	-14	True	AATAAA	-17	NA	89590412	89566736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
transcript_1224.known	chr1	+	487	5	FSM	ENSMUSG00000073702.12	ENSMUST00000178079.8	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	1086	junction_1	4596.75456164455	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCAGGGTTTGGTTTTCC	NA	False	NA	24	True	AATAAA	-13	NA	39407009	39410445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_39407088_39407229_39407337_39409094_39409221_39410034_39410148_39410382
transcript_122400.known	chr7	-	806	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATTTGAAATACCATTAC	NA	False	NA	-2	True	AATAAA	-17	NA	89590407	89567911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
transcript_122401.known	chr7	-	835	4	FSM	ENSMUSG00000062797.15	ENSMUST00000207309.2	835	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	457.818741425032	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590334	89567895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_89568216_89569280_89569400_89584934_89585173_89590176
transcript_122405.known	chr7	-	2539	1	FSM	ENSMUSG00000062797.15	ENSMUST00000207695.2	2539	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTGCCTTATGGTTA	NA	False	NA	NA	False	AATAAA	-15	NA	89590371	89587832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_89587800_89590400
transcript_122408.known	chr7	-	1503	12	FSM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	0	0	0	0	multi-exon	FALSE	canonical	3	1777	junction_2	230.503903625897	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTTTTTCCTAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	89629910	89604144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
transcript_122418.nic	chr7	-	2170	12	NIC	ENSMUSG00000030619.11	novel	2067	12	NA	NA	-269	-71	combination_of_known_junctions	FALSE	canonical	3	461	junction_2	565.94251087883	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTATTTTTATTGTG	NA	False	NA	-9	True	AATAAA	-17	NA	89630460	89603938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
transcript_12242.known	chr10	+	1730	9	FSM	ENSMUSG00000034974.14	ENSMUST00000178422.9	1730	9	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	26.7675176286483	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAAAAGGACACACTGCGG	8555	False	NA	NA	False	NA	NA	NA	81018838	81029031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81018931_81019809_81019910_81025772_81026134_81026215_81026346_81026431_81026481_81026875_81026903_81027592_81027746_81028130_81028177_81028259
transcript_12243.known	chr10	+	1676	9	FSM	ENSMUSG00000034974.14	ENSMUST00000047665.7	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	121.471125684255	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAAAAGGACACACTGCGG	8813	False	NA	NA	False	NA	NA	NA	81019096	81029031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81019135_81019809_81019910_81025772_81026134_81026215_81026346_81026431_81026481_81026875_81026903_81027592_81027746_81028130_81028177_81028259
transcript_122441.known	chr7	-	454	2	FSM	ENSMUSG00000030619.11	ENSMUST00000157001.2	454	2	0	0	0	0	multi-exon	FALSE	canonical	3	2155	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCCTTGTTCTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	89629767	89625951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_89626258_89629619
transcript_122443.known	chr7	-	271	2	FSM	ENSMUSG00000097162.3	ENSMUST00000209166.2	271	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCAAACCGCTATCTAA	NA	False	NA	-13	True	AATAAA	-17	NA	89779148	89774038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_89774241_89779079
transcript_122445.known	chr7	+	3528	21	FSM	ENSMUSG00000039361.12	ENSMUST00000049537.9	3528	21	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_17	57.7688497375532	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAAAAGAATAATGTCT	NA	False	NA	NA	False	AATAAA	-20	NA	89779723	89858308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89831426_89831577_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89843480_89843505_89844862_89844923_89846123_89846229_89856790
transcript_122447.known	chr7	+	3361	20	FSM	ENSMUSG00000039361.12	ENSMUST00000208742.2	3361	20	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	48.3518384036048	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTACGGTGTTCTGGTT	NA	False	NA	17	True	AATAAA	-18	NA	89779711	89858138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89831426_89831577_89838357_89838466_89840348_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
transcript_122451.known	chr7	+	3489	19	FSM	ENSMUSG00000039361.12	ENSMUST00000207225.2	3489	19	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_13	27.4656350938971	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTACGGTGTTCTGGTTTG	NA	False	NA	19	True	AATAAA	-20	NA	89779420	89858140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
transcript_122455.known	chr7	+	873	4	FSM	ENSMUSG00000051451.7	ENSMUST00000207252.2	873	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	30.3424894606007	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAGTGTCTTAAAATAGA	NA	False	NA	NA	False	AATAAA	-15	NA	90093094	90096929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_90093296_90093507_90093586_90094632_90094702_90096404
transcript_122456.known	chr7	+	1269	4	FSM	ENSMUSG00000051451.7	ENSMUST00000208379.2	1269	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	42.6953028902348	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATTTATCATCTGGAAT	NA	False	NA	NA	False	AGTAAA	-13	NA	90093086	90097202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_90093411_90093507_90093586_90094632_90094702_90096404
transcript_122457.known	chr7	+	891	3	FSM	ENSMUSG00000051451.7	ENSMUST00000107206.3	891	3	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	21.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGTAGGATACAAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	90092876	90095026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_90093296_90093507_90093586_90094632
transcript_122459.known	chr7	+	789	3	FSM	ENSMUSG00000051451.7	ENSMUST00000209102.2	789	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	37	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAGTGTCTTAAAATAGA	NA	False	NA	NA	False	AATAAA	-15	NA	90093390	90096929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_90093586_90094632_90094702_90096404
transcript_122461.known	chr7	+	1380	2	FSM	ENSMUSG00000051451.7	ENSMUST00000143408.3	1380	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGGCTCAAAGAATTT	NA	False	NA	NA	False	AATAAA	-22	NA	90092885	90095312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_90093586_90094632
transcript_122463.known	chr7	+	3376	1	FSM	ENSMUSG00000051451.7	ENSMUST00000061767.5	3376	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGGCTCAAAGAATTT	NA	False	NA	NA	False	AATAAA	-22	NA	90091936	90095312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_90091900_90095300
transcript_122465.known	chr7	-	799	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_4	32.5297940356222	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1645	False	NA	NA	False	AATAAA	-19	NA	90106437	90099907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
transcript_122467.known	chr7	-	756	5	FSM	ENSMUSG00000030615.13	ENSMUST00000136652.8	756	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	308.308591349641	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1666	False	NA	NA	False	AATAAA	-19	NA	90106416	90099907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
transcript_122468.known	chr7	-	466	4	FSM	ENSMUSG00000030615.13	ENSMUST00000207159.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	346.691345275432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1772	False	NA	NA	False	AATAAA	-7	NA	90106310	90099919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_90100144_90100750_90100866_90104631_90104728_90106279
transcript_122469.nic	chr7	-	1833	4	NIC	ENSMUSG00000030615.13	novel	466	4	NA	NA	3	0	intron_retention	FALSE	canonical	3	739	junction_3	32.6904675198546	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1648	False	NA	NA	False	AATAAA	-7	NA	90106434	90099919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_90100144_90100750_90102109_90104631_90104728_90106279
transcript_122473.known	chr7	-	397	2	FSM	ENSMUSG00000030615.13	ENSMUST00000153393.3	397	2	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTTTCCATTCAGCTT	1721	False	NA	NA	False	NA	NA	NA	90106361	90104412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_90104728_90106279
transcript_122476.known	chr7	-	2259	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGCATGGAGGTCCCTG	6020	False	NA	NA	False	NA	NA	NA	90125209	90116645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
transcript_122479.known	chr7	-	2782	12	FSM	ENSMUSG00000041343.20	ENSMUST00000118157.8	2782	12	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	4.22702834093188	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATGTACTACTACTAATA	NA	False	NA	NA	False	AATAAA	-17	NA	92286350	92233390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_92233754_92239322_92239468_92241038_92241166_92254415_92254589_92259752_92259859_92261950_92262077_92263559_92263761_92268755_92268892_92273175_92273296_92274978_92275087_92280706_92280871_92285337
transcript_122480.known	chr7	+	1596	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210356	92231502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
transcript_122483.nic	chr7	-	2723	9	ISM	ENSMUSG00000041343.20	ENSMUST00000118157.8	2782	12	0	20449	0	305	5prime_fragment	FALSE	canonical	2	4	junction_3	3.40725329260975	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACAATCAGGACTCGAGC	NA	False	NA	NA	False	NA	NA	NA	92286350	92253839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_92254589_92259752_92259859_92261950_92262077_92263559_92263761_92268755_92268892_92273175_92273296_92274978_92275087_92280706_92280871_92285337
transcript_122487.known	chr7	+	1494	8	FSM	ENSMUSG00000030613.14	ENSMUST00000085017.5	1494	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	63.9607660354122	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210356	92231502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
transcript_122492.known	chr7	-	5995	16	FSM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	55.0229850961295	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAAGGCTTTTTTCATG	NA	False	NA	NA	False	ATTAAA	-25	NA	92319142	92292750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92309005_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
transcript_122494.nic	chr7	-	1461	5	ISM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	2	18087	2	6554	5prime_fragment	FALSE	canonical	3	78	junction_4	28.1513765205185	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTGAAAAATCAAGACTC	NA	False	NA	NA	False	AAAACA	-18	NA	92319140	92310837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
transcript_122495.nic	chr7	-	1353	5	ISM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	0	18197	0	6444	5prime_fragment	FALSE	canonical	3	78	junction_4	28.1513765205185	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAATCAGGTGAAAGAATA	NA	False	NA	NA	False	AAGAAA	-4	NA	92319142	92310947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
transcript_122496.known	chr7	-	1720	1	FSM	ENSMUSG00000041328.17	ENSMUST00000208255.2	1720	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTCTTTTTTATTTAC	NA	False	NA	NA	False	AATAAA	-15	NA	92319111	92317391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_92317400_92319100
transcript_122497.known	chr7	-	3832	1	FSM	ENSMUSG00000074024.6	ENSMUST00000182578.2	3832	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACATAAGCAGGGTATTTA	NA	False	NA	NA	False	AAAAAG	-15	NA	92390676	92386844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_92386800_92390700
transcript_122499.known	chr7	+	9456	5	FSM	ENSMUSG00000030643.15	ENSMUST00000032879.15	9456	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	4.32290411644765	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGAGGATTATATACCAT	NA	False	NA	NA	False	AATAAA	-19	NA	92390810	92493743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_92391051_92469190_92469292_92473005_92473090_92478733_92478918_92484896
transcript_12250.known	chr10	+	1204	8	FSM	ENSMUSG00000034974.14	ENSMUST00000220076.2	1204	8	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	26.0149093829689	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCCGCCGAGCAGCGGGA	8619	False	NA	NA	False	NA	NA	NA	81018902	81028487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81018931_81019809_81019910_81025772_81026346_81026431_81026481_81026875_81026903_81027592_81027746_81028130_81028177_81028259
transcript_122501.known	chr7	-	840	7	FSM	ENSMUSG00000030641.11	ENSMUST00000208356.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	58.4648517392193	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAAACCTCACTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	92523445	92509356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92517319_92517407_92521969_92522053_92523348
transcript_122503.known	chr7	-	3387	6	FSM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	35.6168499449348	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTTTTGTTATAATTT	NA	False	NA	-1	True	AGTAAA	-18	NA	92523455	92506732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92521969_92522053_92523348
transcript_122508.known	chr7	+	2967	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	10.1665812837945	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATTTATATTAATTTATA	NA	False	NA	NA	False	NA	NA	NA	92524459	92583791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
transcript_122514.known	chr7	+	2527	3	FSM	ENSMUSG00000048078.17	ENSMUST00000129445.8	2527	3	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAGAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95859352	96088173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_95859617_96004562_96004619_96085966
transcript_122520.nic	chr7	+	2237	14	NIC	ENSMUSG00000018995.13	novel	3778	14	NA	NA	-14	520	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	27.7429024987159	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATGAAAGAAGTTATTTT	7328	False	NA	6	True	ATTAAA	-18	NA	96600697	96712699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_96600863_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
transcript_122522.known	chr7	+	3778	14	FSM	ENSMUSG00000018995.13	ENSMUST00000044466.12	3778	14	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	11.3976017408833	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATACTGTTTGCGCTTCTT	7342	False	NA	NA	False	ATTAAA	-23	NA	96600711	96713965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
transcript_122528.nic	chr7	+	2337	13	NIC	ENSMUSG00000018995.13	novel	3778	14	NA	NA	-20	520	combination_of_known_junctions	FALSE	canonical	2	5	junction_10	31.5571571385425	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATGAAAGAAGTTATTTT	7379	False	NA	6	True	ATTAAA	-18	NA	96600748	96712699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96706654_96706753_96708992_96709020_96711775
transcript_12253.known	chr10	+	3349	18	FSM	ENSMUSG00000034949.19	ENSMUST00000117798.8	3349	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.83204841204676	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGGCCTTCATGTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	81068988	81087957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81069077_81073190_81073426_81075263_81075349_81075767_81076049_81077828_81078009_81078603_81078791_81079483_81079630_81080494_81080615_81081238_81081379_81081862_81081996_81082423_81082591_81083052_81083228_81084223_81084363_81084817_81084913_81084998_81085095_81085518_81085631_81086470_81086569_81087085
transcript_122534.known	chr7	-	4262	11	FSM	ENSMUSG00000035713.16	ENSMUST00000139582.9	4262	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.83303027798234	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGAGTTGTGGCGTCTGCT	NA	False	NA	26	True	AATAAA	-42	NA	96981227	96958586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_96959704_96960559_96961833_96962262_96962370_96962705_96962800_96963940_96964135_96969173_96969333_96970766_96970869_96971255_96971386_96973414_96973548_96974498_96975268_96981043
transcript_122537.known	chr7	+	2966	2	FSM	ENSMUSG00000044952.6	ENSMUST00000054107.6	2966	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTTGTGTCTGCTTCCA	NA	False	NA	NA	False	GATAAA	-7	NA	96981533	96999420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_96981579_96996499
transcript_122540.known	chr7	+	2039	13	FSM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_8	19.8289560996034	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCACATTCACTTTCCT	NA	False	NA	63	True	NA	NA	NA	97020812	97041392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
transcript_12255.known	chr10	+	1841	13	FSM	ENSMUSG00000004933.18	ENSMUST00000121205.8	1841	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3.15788255358274	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTGTCTGATGCCTGTG	NA	False	NA	NA	False	CATAAA	-22	NA	81093138	81098815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81093409_81094313_81094374_81095007_81095122_81095216_81095333_81095420_81095641_81095922_81096017_81096741_81096808_81097276_81097377_81097464_81097550_81097628_81097703_81097794_81097991_81098281_81098369_81098456
transcript_122553.known	chr7	+	683	3	FSM	ENSMUSG00000030647.9	ENSMUST00000032882.9	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	2164	junction_2	233	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCCTTTCCTGGTTCTGC	NA	False	NA	21	True	ATTAAA	-20	NA	97049209	97057009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97049565_97056072_97056217_97056825
transcript_122554.known	chr7	+	470	2	FSM	ENSMUSG00000030647.9	ENSMUST00000149122.2	470	2	0	0	0	0	multi-exon	FALSE	canonical	3	2630	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGGCTGCTTGCGTGGC	NA	False	NA	NA	False	NA	NA	NA	97049309	97056287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97049565_97056072
transcript_122555.known	chr7	-	1277	2	FSM	ENSMUSG00000035686.9	ENSMUST00000043077.8	1277	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCATGTTGGTCTTTTA	NA	False	NA	-6	True	ATTAAA	-15	NA	97066937	97062144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97062723_97066238
transcript_122556.known	chr7	+	2203	2	FSM	ENSMUSG00000051727.15	ENSMUST00000206279.2	2203	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTTCGTGGTGGTCTG	803	False	NA	NA	False	AATAAA	-16	NA	97102428	97108762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97102670_97106800
transcript_122558.nnic	chr7	+	3260	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_5	100.677539412467	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTTCTAGTTTCTGG	887	False	NA	26	True	AATAAA	-14	NA	97130116	97190602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145023_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
transcript_122563.known	chr7	+	3240	23	FSM	ENSMUSG00000025133.10	ENSMUST00000026126.10	3240	23	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_9	43.027187253819	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGCTGTTCTAGTTTCTG	933	False	NA	25	True	AATAAA	-13	NA	97130162	97190601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
transcript_122571.nnic	chr7	+	3053	22	NIC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_20	102.131723224906	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTTCTAGTTTCTGG	977	False	NA	26	True	AATAAA	-14	NA	97130206	97190602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97187106_97187228_97190218
transcript_122595.known	chr7	+	2179	12	FSM	ENSMUSG00000025133.10	ENSMUST00000206644.2	2179	12	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_9	35.9850749594149	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTTTTTGGGTTTTTTG	980	False	NA	NA	False	AGTAAA	-10	NA	97130209	97163444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733
transcript_122599.known	chr7	+	885	5	FSM	ENSMUSG00000025133.10	ENSMUST00000205481.2	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_4	26.0708170182678	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTCAGTATTGACATTT	990	False	NA	NA	False	NA	NA	NA	97130219	97145190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863
transcript_1226.known	chr1	+	703	4	FSM	ENSMUSG00000073702.12	ENSMUST00000194746.6	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2213.20918326508	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39406958	39410447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034
transcript_12260.known	chr10	+	2983	9	FSM	ENSMUSG00000004933.18	ENSMUST00000150605.8	2983	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	3.04138126514911	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGATGCCTGTGTGTC	NA	False	NA	NA	False	CATAAA	-26	NA	81093175	81098819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81093409_81094313_81094374_81095010_81095122_81095216_81095333_81095420_81096808_81097276_81097377_81097464_81097991_81098281_81098369_81098456
transcript_122600.known	chr7	-	883	5	FSM	ENSMUSG00000035642.17	ENSMUST00000154853.8	883	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	23.5902522241709	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGTTGAGAGCATTAG	NA	False	NA	NA	False	AATAAA	-22	NA	97228703	97199546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794_97224899_97228572
transcript_122602.known	chr7	-	776	4	FSM	ENSMUSG00000035642.17	ENSMUST00000072725.12	776	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	25.8069758011279	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGAGCATTAGCGATCT	NA	False	NA	NA	False	AATAAA	-28	NA	97228686	97199540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97199949_97214357_97214508_97224794_97224899_97228572
transcript_122603.known	chr7	-	789	4	FSM	ENSMUSG00000035642.17	ENSMUST00000136757.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	30.4740326617051	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCATTAGCGATCTCAC	NA	False	NA	NA	False	AATAAA	-31	NA	97228704	97199537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97228572
transcript_122606.known	chr7	-	467	3	FSM	ENSMUSG00000035642.17	ENSMUST00000138060.3	467	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	14	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCCTCCACTGTGTA	NA	False	NA	-1	True	AATAAA	-37	NA	97228689	97199748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97199949_97214357_97214508_97228572
transcript_122607.known	chr7	+	11124	16	FSM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	14.120749114532	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTAGCATTGTGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	97229103	97341985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259_97302415_97310019_97311789_97313766_97313974_97318975_97319081_97320009_97320090_97323787_97323843_97325362_97325473_97326551_97326620_97328141_97328350_97329825_97330050_97330905_97331095_97334631
transcript_122611.nic	chr7	+	3328	11	ISM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	-332	16598	-324	0	5prime_fragment	FALSE	canonical	3	100	junction_2	12.6491106406735	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAGAAAAAAGATGCA	NA	False	NA	11	True	TTTAAA	-27	NA	97228771	97325387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259_97302415_97310019_97311789_97313766_97313974_97318975_97319081_97320009_97320090_97323787_97323843_97325362
transcript_122612.nic	chr7	+	3303	10	ISM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	-332	18143	-324	-1545	5prime_fragment	FALSE	canonical	3	100	junction_2	13.0336695987691	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTTTCTAGTTGATAAG	NA	False	NA	NA	False	AAAACA	-15	NA	97228771	97323842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259_97302415_97310019_97311789_97313766_97313974_97318975_97319081_97320009_97320090_97323787
transcript_122615.nic	chr7	+	2463	6	ISM	ENSMUSG00000035623.15	ENSMUST00000156060.8	5695	15	-332	24232	-324	1274	5prime_fragment	FALSE	canonical	3	100	junction_2	10.0915806492343	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAATATAAGTTAGTTTC	NA	False	NA	NA	False	AAAACA	-3	NA	97228771	97311395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259_97302415_97310019
transcript_122617.nic	chr7	+	1087	5	ISM	ENSMUSG00000035623.15	ENSMUST00000156060.8	5695	15	-332	33213	-324	-7707	5prime_fragment	FALSE	canonical	3	100	junction_2	11.247221879202	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTTGTGTGTTTTCT	NA	False	NA	NA	False	AAGAAA	-23	NA	97228771	97302414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259
transcript_122619.known	chr7	+	3085	1	FSM	ENSMUSG00000035623.15	ENSMUST00000205536.2	3085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAAACAAGT	NA	False	NA	NA	False	NA	NA	NA	97229095	97232180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97229100_97232200
transcript_122621.known	chr7	+	1504	7	FSM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_4	64.1950153828161	951	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGCTGTGATTTTGCTCT	NA	False	NA	11	True	AATAAA	-17	NA	97345840	97368086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
transcript_122628.known	chr7	-	3737	3	FSM	ENSMUSG00000042797.10	ENSMUST00000206389.2	3737	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	4.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATGTGTATATGTGAAT	NA	False	NA	NA	False	AAGAAA	-5	NA	97387496	97373212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97375912_97378177_97378295_97386575
transcript_122630.nnic	chr7	+	2445	16	NNC	ENSMUSG00000030774.14	novel	2794	15	NA	NA	-48	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_1	74.1309352130105	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATTTCCTGATCTAGTG	NA	False	NA	45	True	NA	NA	NA	97437699	97560489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_97438182_97480061_97480266_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
transcript_122634.known	chr7	+	3065	15	FSM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	56.3067853960129	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAAGTGTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	97492141	97561588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
transcript_12264.known	chr10	-	604	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	11.5	481	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3094	False	NA	0	True	AATAAA	-29	NA	81102768	81100546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81100832_81101484_81101642_81102606
transcript_122642.known	chr7	+	911	2	FSM	ENSMUSG00000030774.14	ENSMUST00000205757.2	911	2	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATATTTGTATCTATTT	NA	False	NA	NA	False	AATAAA	-29	NA	97437747	97504119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_97438182_97503642
transcript_122652.known	chr7	-	4498	13	FSM	ENSMUSG00000035547.15	ENSMUST00000040971.14	4498	13	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_9	14.761765552339	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGTTTCATTTTTCC	NA	False	NA	1	True	AATAAA	-23	NA	97827481	97770765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97785176_97801018_97801151_97811122_97811318_97827250
transcript_122653.known	chr7	-	2232	13	FSM	ENSMUSG00000035547.15	ENSMUST00000107112.2	2232	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	45.8223471681668	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAATGCAGTTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	97811549	97772867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97785176_97801018_97801151_97811122_97811318_97811482
transcript_122668.known	chr7	-	2144	1	FSM	ENSMUSG00000074006.4	ENSMUST00000098281.4	2144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTGTGGTGTGGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	97794709	97792565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97792600_97794700
transcript_122669.known	chr7	-	1440	12	FSM	ENSMUSG00000030760.15	ENSMUST00000151258.8	1440	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	85.8415800151892	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTACTGGCAAAATACC	NA	False	NA	-48	True	ATTAAA	-16	NA	97958735	97865649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97879656_97879821_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
transcript_122670.known	chr7	-	11340	11	FSM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	20.7511445467473	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCGGTCTGTGAAACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	97958745	97855595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
transcript_122674.known	chr7	-	2620	3	FSM	ENSMUSG00000049580.13	ENSMUST00000164726.8	2620	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCATTTGCTGACAAATC	NA	False	NA	2	True	AATAAA	-30	NA	98010495	97999874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98002338_98008564_98008675_98010448
transcript_122676.known	chr7	-	2310	2	FSM	ENSMUSG00000049580.13	ENSMUST00000206414.2	2310	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGACTCTGTTCTGGGT	NA	False	NA	NA	False	GATAAA	-18	NA	98010495	98000074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98002338_98010448
transcript_122677.nnic	chr7	-	2793	2	NNC	ENSMUSG00000049580.13	novel	2597	2	NA	NA	-73	-4	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTAGCATTTGCTGACA	NA	False	NA	-2	True	AATAAA	-26	NA	98010608	97999878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_98002338_98010274
transcript_122684.known	chr7	-	7693	20	FSM	ENSMUSG00000035401.10	ENSMUST00000205276.2	7693	20	0	0	0	0	multi-exon	TRUE	canonical	3	39	junction_14	16.3198636678896	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAATTTTAAAGACTCC	3506	False	NA	NA	False	AATAAA	-26	NA	98305986	98236343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
transcript_12269.nic	chr10	-	3093	21	NIC	ENSMUSG00000034917.9	novel	2901	21	NA	NA	-129	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	33.8096140173176	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTTTTTATATTA	7711	False	NA	-13	True	AATAAA	-6	NA	81121744	81109061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81121434
transcript_122695.known	chr7	-	2368	14	FSM	ENSMUSG00000035401.10	ENSMUST00000206619.2	2368	14	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_10	19.0803346825372	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATGAATTCACATGCTC	3690	False	NA	NA	False	NA	NA	NA	98305802	98251791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
transcript_122697.known	chr7	-	2965	1	FSM	ENSMUSG00000035401.10	ENSMUST00000205331.2	2965	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAGAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	98243442	98240477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98240500_98243400
transcript_122699.known	chr7	+	1123	6	FSM	ENSMUSG00000030753.16	ENSMUST00000126356.8	1123	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	87.2958189147682	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAAGTGAGGGACTCACA	NA	False	NA	NA	False	NA	NA	NA	98352309	98364574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_98352686_98356203_98356325_98357143_98357239_98359332_98359441_98362065_98362103_98364188
transcript_12270.known	chr10	-	2901	21	FSM	ENSMUSG00000034917.9	ENSMUST00000219479.2	2901	21	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_20	30.1312130522487	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTTTTTATATTA	6983	False	NA	-13	True	AATAAA	-6	NA	81127415	81109061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81127297
transcript_122702.known	chr7	+	3723	5	FSM	ENSMUSG00000030753.16	ENSMUST00000033009.16	3723	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_4	20.5791156272567	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGGTGAGGTGTTTTTG	NA	False	NA	12	True	AATAAA	-19	NA	98352309	98367269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_98352686_98356203_98356325_98359332_98359441_98362065_98362103_98364188
transcript_122704.known	chr7	+	607	5	FSM	ENSMUSG00000030753.16	ENSMUST00000153566.2	607	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	84.5192285814299	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTATTTGAGATTCTG	NA	False	NA	NA	False	NA	NA	NA	98352534	98364320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_98352686_98356203_98356325_98359332_98359441_98362065_98362161_98364188
transcript_122706.nic	chr7	+	687	3	ISM	ENSMUSG00000030753.16	ENSMUST00000153566.2	607	5	-322	4895	-97	-4895	5prime_fragment	FALSE	canonical	3	192	junction_2	23.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAATAAAAGAATTGGTATG	NA	False	NA	NA	False	NA	NA	NA	98352212	98359425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_98352686_98356203_98356325_98359332
transcript_122707.known	chr7	-	5157	15	FSM	ENSMUSG00000035354.10	ENSMUST00000037968.10	5157	15	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_11	14.4016722385043	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGAGAGTTAAAAGTATA	NA	False	NA	-35	True	AATAAA	-16	NA	98790348	98534227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98537800_98555698_98555791_98589097_98589177_98628842_98629009_98637390_98637452_98638741_98638830_98641130_98641216_98653786_98653914_98665775_98665882_98715006_98715090_98737307_98737383_98748518_98748681_98758269_98758305_98767394_98767513_98790040
transcript_122717.nic	chr7	-	881	7	ISM	ENSMUSG00000035354.10	ENSMUST00000207032.2	1792	12	-49	37366	-40	-28662	5prime_fragment	FALSE	canonical	3	139	junction_3	16.2754074876449	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAATTGAAGAAAAACTAA	NA	False	NA	NA	False	ATTAAA	-33	NA	98790388	98665821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_98665882_98715006_98715090_98737307_98737383_98748518_98748681_98758269_98758305_98767394_98767513_98790040
transcript_122718.known	chr7	-	2262	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTTGTTGCTTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	98831926	98802864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
transcript_122720.known	chr7	-	1780	6	FSM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	4.4	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTTTTCTCTCTCC	NA	False	NA	-1	True	AATAAA	-20	NA	98887826	98868290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98869167_98871459_98871660_98872199_98872375_98872707_98872913_98881664_98881844_98887681
transcript_122722.known	chr7	+	2906	4	FSM	ENSMUSG00000055407.15	ENSMUST00000208924.2	2906	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	32.8768746825012	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCTGGCTCTGTG	NA	False	NA	13	True	AATAAA	-19	NA	98917178	98986344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_98918521_98964895_98965110_98966678_98966876_98985191
transcript_122723.known	chr7	+	4920	3	FSM	ENSMUSG00000055407.15	ENSMUST00000127492.2	4920	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	24	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTCTTGATCGTATTT	NA	False	NA	6	True	AATAAA	-16	NA	98916695	98969559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_98918521_98964895_98965110_98966678
transcript_122725.known	chr7	+	2275	3	FSM	ENSMUSG00000055407.15	ENSMUST00000208605.2	2275	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	18	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCTGGCTCTGTG	NA	False	NA	13	True	AATAAA	-19	NA	98917612	98986344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_98918521_98964895_98965110_98985191
transcript_122737.known	chr7	-	2128	6	FSM	ENSMUSG00000070436.13	ENSMUST00000207849.2	2128	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	741.154936568596	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATATCATTCTTTCTAAG	NA	False	NA	84	True	ATTAAA	-11	NA	99002321	98994601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002259
transcript_122739.known	chr7	-	2173	6	FSM	ENSMUSG00000070436.13	ENSMUST00000208119.2	2173	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	754.843400977978	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATTCTTTCTAAGACAAA	NA	False	NA	89	True	ATTAAA	-16	NA	99002321	98994596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088_99002173_99002259
transcript_122744.known	chr7	-	2274	5	FSM	ENSMUSG00000070436.13	ENSMUST00000169437.9	2274	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	667.492462504259	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAGCCTGTGATTTATG	NA	False	NA	NA	False	ATTAAA	-30	NA	99002321	98994582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088
transcript_122745.nic	chr7	-	2322	5	NIC	ENSMUSG00000070436.13	novel	2128	6	NA	NA	53	0	intron_retention	FALSE	canonical	3	88	junction_4	649.473777376731	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATATCATTCTTTCTAAG	NA	False	NA	84	True	ATTAAA	-11	NA	99002393	98994601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002093
transcript_122747.known	chr7	-	2215	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	4612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCTTTCTAAGACAAAG	NA	False	NA	90	True	ATTAAA	-17	NA	99002446	98994595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
transcript_122751.known	chr7	+	4611	18	FSM	ENSMUSG00000035314.11	ENSMUST00000037528.10	4611	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.03839331062234	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAACCTTCAATTCTC	NA	False	NA	NA	False	NA	NA	NA	99030620	99111084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_99031416_99036310_99036396_99059615_99059699_99073259_99073437_99087454_99087559_99090378_99090473_99091094_99091155_99097328_99097428_99097679_99097774_99098148_99098295_99100920_99101004_99102199_99102351_99102990_99103210_99103681_99103840_99104118_99104267_99105658_99105742_99107980_99108094_99109165
transcript_122753.nic	chr7	+	2842	13	ISM	ENSMUSG00000035314.11	ENSMUST00000213887.2	2711	16	17329	0	-478	0	3prime_fragment	FALSE	canonical	0	0	junction_10	3.62476052848859	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGTCTCTGAATTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	99090648	99110192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_99091155_99097328_99097428_99097679_99097774_99098148_99098295_99100920_99101004_99102199_99102351_99102990_99103210_99103681_99103840_99104118_99104267_99105658_99105742_99106203_99106219_99107980_99108094_99109165
transcript_122757.known	chr7	-	1908	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	0	0	0	0	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	11523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	8335	False	NA	-12	True	AATAAA	-29	NA	99132945	99127102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
transcript_12276.known	chr10	+	2268	12	FSM	ENSMUSG00000004931.12	ENSMUST00000220297.2	2268	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	66.1833166663524	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	108	False	NA	18	True	TATAAA	-21	NA	81102793	81109070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81102968_81104007_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_122770.known	chr7	-	4369	14	FSM	ENSMUSG00000030737.18	ENSMUST00000107088.8	4369	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.1483446221183	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCCTTCTAAACTGCAT	NA	False	NA	NA	False	ATTAAA	-36	NA	99356368	99307595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99309384_99310310_99310432_99310724_99310790_99311653_99311818_99313985_99314152_99316098_99316457_99320156_99320251_99331901_99332093_99334682_99334782_99335090_99335325_99338069_99338233_99339638_99339777_99340963_99341101_99355717
transcript_122773.known	chr7	-	3341	3	FSM	ENSMUSG00000035239.7	ENSMUST00000036331.7	3341	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTGGAGTGAGTTAGAT	6025	False	NA	NA	False	AATAAA	-15	NA	99477624	99460645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99463515_99472528_99472741_99477364
transcript_122775.known	chr7	-	1553	6	FSM	ENSMUSG00000035227.8	ENSMUST00000208477.2	1553	6	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_5	975.780180163545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGTCTTGAAAGAAGG	NA	False	NA	-2	True	AATAAA	-19	NA	99508066	99488109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99498363_99498460_99507970
transcript_122776.known	chr7	-	1610	6	FSM	ENSMUSG00000035227.8	ENSMUST00000209032.2	1610	6	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_4	1023.35436677624	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508118	99488110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99505619_99505722_99507970
transcript_12278.nic	chr10	+	2006	11	NIC	ENSMUSG00000004931.12	novel	2268	12	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	59.7863696840676	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1331	False	NA	18	True	TATAAA	-21	NA	81104016	81109070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_81104154_81104691_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_122782.known	chr7	-	2909	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	0	0	0	0	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCTTTTCCTTTCAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	99508184	99486775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
transcript_122785.known	chr7	-	688	4	FSM	ENSMUSG00000035227.8	ENSMUST00000208939.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	2	1599	junction_1	426.888744288251	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	NA	False	NA	NA	NA	99508083	99493711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99494042_99497505_99497667_99498182_99498267_99507970
transcript_122791.known	chr7	-	3069	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	-4	True	AATAAA	-18	NA	99770772	99731317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
transcript_122796.known	chr7	-	1574	11	FSM	ENSMUSG00000030726.17	ENSMUST00000127128.8	1574	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	180.514265364264	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTCAAGAATGACCTGC	NA	False	NA	7	True	TATAAA	-34	NA	99770662	99732599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99768880_99768937_99770570
transcript_1228.known	chr1	+	630	4	FSM	ENSMUSG00000073702.12	ENSMUST00000179954.8	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8615	junction_3	1758.8270712798	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGGGTTTGGTTTTCCT	NA	False	NA	25	True	AATAAA	-14	NA	39407009	39410446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_39407337_39409094_39409221_39410034_39410148_39410382
transcript_12280.nic	chr10	+	2042	11	NIC	ENSMUSG00000004931.12	novel	2268	12	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	67.9482155762754	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1343	False	NA	18	True	TATAAA	-21	NA	81104028	81109070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_81104154_81104643_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_122806.nnic	chr7	+	901	3	NNC	ENSMUSG00000030725.5	novel	1663	2	NA	NA	-53	-40	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	41	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTATGAAAATACTATGAAAA	NA	False	NA	NA	False	NA	NA	NA	99808430	99809821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_99808955_99809380_99809666_99809729
transcript_122807.nnic	chr7	+	1215	3	NNC	ENSMUSG00000030725.5	novel	1663	2	NA	NA	-53	274	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	41	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGAATGTCTCAAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	99808430	99810135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_99808955_99809380_99809666_99809729
transcript_122808.nnic	chr7	+	1651	3	NNC	ENSMUSG00000030725.5	novel	1663	2	NA	NA	-53	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	41	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACATTCGCCTCAATTC	NA	False	NA	3	True	NA	NA	NA	99808430	99810571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_99808955_99809380_99809666_99809729
transcript_122809.nnic	chr7	+	2998	3	NNC	ENSMUSG00000030725.5	novel	1663	2	NA	NA	-53	1346	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	41	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTGGGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	99808430	99811918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_99808955_99809380_99809666_99809729
transcript_122810.known	chr7	+	8834	14	FSM	ENSMUSG00000030729.18	ENSMUST00000084935.11	8834	14	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_8	2.32557176274323	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATGAGTGTCTATGCAC	NA	False	NA	14	True	AATAAA	-14	NA	99876600	99928074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_99877242_99899498_99899667_99901391_99901499_99902439_99902525_99904740_99904825_99909090_99909285_99910806_99910997_99911272_99911371_99912117_99912296_99915871_99915966_99916692_99916823_99917323_99917514_99919534_99919669_99921533
transcript_122812.known	chr7	+	7803	33	FSM	ENSMUSG00000047248.21	ENSMUST00000051777.15	7803	33	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_15	6.6496446098645	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTGTACAAGTGTTTT	NA	False	NA	20	True	AATAAA	-14	NA	100021439	100119357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100021704_100023470_100023741_100029174_100029333_100039285_100039510_100040139_100040388_100044374_100044508_100044961_100045052_100048874_100049023_100055164_100055314_100056068_100056279_100056923_100057037_100059538_100059658_100062532_100062656_100065255_100065748_100067650_100067803_100068857_100069105_100071721_100071903_100073946_100074131_100075183_100075357_100076379_100076504_100079256_100079526_100079943_100080034_100081177_100081781_100084964_100085304_100089379_100089519_100090238_100090304_100092563_100092770_100093513_100093648_100097918_100098081_100100775_100100997_100103809_100104699_100108983_100109096_100118585
transcript_122820.known	chr7	-	2772	14	FSM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	101.852195962999	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGAGGAGCTGTCCT	NA	False	NA	-8	True	AATAAA	-17	NA	100021514	99975943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004009_100004474_100004569_100020929
transcript_122828.known	chr7	+	3988	8	FSM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	0	0	0	0	multi-exon	TRUE	canonical	3	366	junction_1	56.4938140012529	384	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTCAGGGTTTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	100142543	100151227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
transcript_122836.nic	chr7	-	993	7	ISM	ENSMUSG00000030708.15	ENSMUST00000130534.8	1159	8	1572	0	-46	0	3prime_fragment	FALSE	canonical	3	16	junction_5	19.1020650425259	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTATGATGGGAAGTGA	NA	False	NA	-9	True	AATAAA	-13	NA	100161034	100152227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100156582_100156741_100159901_100160064_100160956
transcript_122840.nic	chr7	-	859	6	ISM	ENSMUSG00000030708.15	ENSMUST00000154516.3	905	7	2945	-60	-70	0	3prime_fragment	FALSE	canonical	3	47	junction_4	7.5736384915046	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTATGATGGGAAGTGA	NA	False	NA	-9	True	AATAAA	-13	NA	100161058	100152227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100159901_100160064_100160956
transcript_122841.known	chr7	+	1391	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTAGTCTGCTTCTCAT	7571	False	NA	NA	False	NA	NA	NA	100186306	100189576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100186400_100188278
transcript_122842.known	chr7	+	742	2	FSM	ENSMUSG00000044881.8	ENSMUST00000120454.3	742	2	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCAAAGGAGTGAACTCG	7703	False	NA	-4	True	AATAAA	-5	NA	100186438	100188986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100186473_100188278
transcript_122847.known	chr7	+	3110	8	FSM	ENSMUSG00000030704.15	ENSMUST00000098252.5	3110	8	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	204.582800960832	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGTTCACATTCTTTATT	NA	False	NA	11	True	AATAAA	-19	NA	100256896	100290475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100257501_100275758_100275818_100277610_100277665_100278872_100278979_100280948_100281061_100283851_100283946_100285901_100285969_100288461
transcript_122850.known	chr7	+	3214	8	FSM	ENSMUSG00000030704.15	ENSMUST00000032946.10	3214	8	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_3	112.157687827342	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGTTCACATTCTTTATT	NA	False	NA	11	True	AATAAA	-19	NA	100256792	100290475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100257501_100275758_100275818_100277610_100277665_100279044_100279151_100280948_100281061_100283851_100283946_100285901_100285969_100288461
transcript_122854.known	chr7	-	4285	8	FSM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_4	76.5855530682877	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTTGCTTGAGTGGA	NA	False	NA	NA	False	ATTAAA	-11	NA	100232309	100194957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100232196
transcript_122863.known	chr7	-	2144	1	FSM	ENSMUSG00000030706.18	ENSMUST00000208916.2	2144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAGAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	100232282	100230138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100230100_100232300
transcript_122864.known	chr7	-	1911	8	FSM	ENSMUSG00000030701.18	ENSMUST00000116287.9	1911	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	7.51868420968044	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGGCTTTGCTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	100307663	100293106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100294277_100294776_100294877_100299134_100299240_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
transcript_122865.known	chr7	-	1806	7	FSM	ENSMUSG00000030701.18	ENSMUST00000107044.10	1806	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	4.3365372770859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGGCTTTGCTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	100307663	100293106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100294277_100294776_100294877_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
transcript_122866.known	chr7	+	6388	9	FSM	ENSMUSG00000029461.18	ENSMUST00000107042.9	6388	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	17.2699160391705	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGTTTGATCAAATAATTT	NA	False	NA	NA	False	NA	NA	NA	100355841	100490588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100467942_100467970_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
transcript_122869.known	chr7	+	4077	8	FSM	ENSMUSG00000029461.18	ENSMUST00000207875.2	4077	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	3.48173074484398	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	100355926	100488389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
transcript_122875.nic	chr7	-	2675	11	NIC	ENSMUSG00000008318.11	novel	2851	11	NA	NA	-7	-325	combination_of_known_junctions	FALSE	canonical	3	11	junction_10	10.0179838290946	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCATGAGGTGCTTCCTT	2191	False	NA	-5	True	AATAAA	-13	NA	100512620	100495378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_100496485_100496602_100496802_100497225_100497481_100497628_100497711_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512318
transcript_122876.known	chr7	-	2851	11	FSM	ENSMUSG00000008318.11	ENSMUST00000008462.11	2851	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	6.09590026165127	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACGAGCTTTTTTTCTGT	2158	False	NA	NA	False	NA	NA	NA	100512653	100495053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100496485_100496602_100496802_100497225_100497481_100497628_100497711_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512500
transcript_122881.nic	chr7	-	2453	10	NIC	ENSMUSG00000008318.11	novel	2851	11	NA	NA	-9	-325	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	13.2310894636482	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCATGAGGTGCTTCCTT	2149	False	NA	-5	True	AATAAA	-13	NA	100512662	100495378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_100496485_100496602_100496802_100497225_100497481_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512500
transcript_122883.known	chr7	-	4516	21	FSM	ENSMUSG00000032875.9	ENSMUST00000209041.2	4516	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	5.07346035758633	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGATGGCTCCCCCGGGC	6852	False	NA	-13	True	AATAAA	-11	NA	100543897	100521341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100522804_100525619_100525890_100525972_100526148_100526914_100527064_100527302_100527371_100527700_100527788_100528011_100528262_100528658_100528964_100529139_100529340_100529807_100529882_100530385_100530600_100530899_100531019_100531426_100531513_100531616_100531727_100531979_100532031_100532322_100532500_100532676_100532770_100532974_100533092_100534883_100535067_100539627_100539706_100543649
transcript_122885.known	chr7	-	3011	3	FSM	ENSMUSG00000032860.6	ENSMUST00000037540.5	3011	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCATTTTGTTG	3103	False	NA	NA	False	ATTAAA	-19	NA	100661205	100645774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100648308_100652770_100652962_100660918
transcript_122886.known	chr7	-	2372	3	FSM	ENSMUSG00000032860.6	ENSMUST00000207916.2	2372	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCAACAACTGGTTCT	3064	False	NA	NA	False	AATACA	-27	NA	100661244	100646234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100648308_100652770_100652962_100661136
transcript_122889.known	chr7	+	4316	20	FSM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	7.64481610612047	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAAATGAAATTAAGT	NA	False	NA	-7	True	TATAAA	-10	NA	100757981	100933589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100883078_100883202_100893327_100893424_100899651_100899769_100902736_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
transcript_122893.known	chr7	-	6459	18	FSM	ENSMUSG00000047767.18	ENSMUST00000120267.9	6459	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_10	9.70606060442378	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTAGATACTATTTAAAT	8377	False	NA	NA	False	NA	NA	NA	100951295	100934527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100944065_100944129_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
transcript_122901.known	chr7	-	2083	17	FSM	ENSMUSG00000047767.18	ENSMUST00000122116.8	2083	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	7.54750579661917	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGCCTCTTTGAAGCA	8394	False	NA	-2	True	NA	NA	NA	100951278	100938823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
transcript_122914.known	chr7	+	1400	7	FSM	ENSMUSG00000030688.16	ENSMUST00000032927.14	1400	7	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_2	26.7581763205193	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCTCTTTGTGCCTGCT	NA	False	NA	7	True	AATAAA	-18	NA	100970319	100995515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100970560_100970920_100971241_100991704_100991853_100992390_100992495_100993123_100993242_100994841_100994895_100995098
transcript_122917.known	chr7	+	5147	34	FSM	ENSMUSG00000032812.19	ENSMUST00000107010.9	5147	34	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	24.8085044217444	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGAGGCCTGTGATG	NA	False	NA	18	True	TATAAA	-23	NA	100997273	101061101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_100997407_101016227_101016306_101022162_101022709_101034068_101034248_101034758_101034824_101035355_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
transcript_12292.known	chr10	-	3024	21	FSM	ENSMUSG00000034917.9	ENSMUST00000045744.7	3024	21	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_20	26.4920271025077	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACAAGACTGAGG	7297	False	NA	8	True	AATAAA	-27	NA	81127101	81109040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81126881
transcript_122923.known	chr7	+	4404	31	FSM	ENSMUSG00000032812.19	ENSMUST00000084895.12	4404	31	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	26.6439278052034	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTTCTGCAGGGTGATT	NA	False	NA	NA	False	NA	NA	NA	101027396	101060951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101027740_101034758_101034824_101035355_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
transcript_122924.known	chr7	+	3693	21	FSM	ENSMUSG00000032812.19	ENSMUST00000098243.4	3693	21	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	25.1838738084513	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCCTTCCTGTCAGTT	NA	False	NA	NA	False	TATAAA	-14	NA	101043574	101061793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101043675_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
transcript_122928.known	chr7	+	2287	17	FSM	ENSMUSG00000001829.18	ENSMUST00000106998.8	2287	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	246.748226943984	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATCCACCTTGCCCTCAT	NA	False	NA	18	True	AATAAA	-24	NA	101312911	101437017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101360617_101360708_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
transcript_12293.known	chr10	+	4323	19	FSM	ENSMUSG00000034902.18	ENSMUST00000045469.15	4323	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_17	62.7837755246991	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCTCTCCGGTGACTTA	5017	False	NA	NA	False	AATAAA	-16	NA	81128838	81155807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81128987_81140517_81140550_81141019_81141113_81141532_81141664_81142141_81142260_81143317_81143471_81144781_81145082_81146512_81146719_81147476_81147561_81147807_81147857_81148335_81148421_81148741_81148904_81149196_81149336_81149453_81149487_81149828_81149928_81150825_81150953_81151712_81151791_81153159_81153238_81153599
transcript_122931.known	chr7	+	4627	16	FSM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_8	67.7342519622745	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTGTGAGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	101312839	101439375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
transcript_122942.nnic	chr7	-	5331	29	NNC	ENSMUSG00000032737.14	novel	4730	29	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_28	28.1340631655664	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCATTTTGTTCCGTTC	NA	False	NA	-8	True	AATAAA	-36	NA	101487050	101471845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101486366
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transcript_123046.known	chr7	-	2344	9	FSM	ENSMUSG00000070426.13	ENSMUST00000089052.11	2344	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_8	114.601483410993	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGGACACGCATTTGC	NA	False	NA	-15	True	AATAAA	-19	NA	101714676	101668358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714473
transcript_123066.known	chr7	+	2298	11	FSM	ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	17.4482090771517	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAAAAGAGAATGCTA	NA	False	NA	NA	False	GGGGCT	-7	NA	101714964	101732288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_123074.nic	chr7	+	3492	11	Fusion	ENSMUSG00000099481.7_ENSMUSG00000100254.2	novel	2298	11	NA	NA	-298	0	intron_retention	FALSE	canonical	2	17	junction_2	28.6462912084619	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714419	101732969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_+_101715012_101719103_101719199_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_123078.nnic	chr7	+	3590	11	Fusion	ENSMUSG00000099481.7_ENSMUSG00000100254.2	novel	2298	11	NA	NA	-293	0	intron_retention	FALSE	canonical	3	6	junction_1	29.1856128940271	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714424	101732969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_+_101715012_101719032_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_123088.nic	chr7	+	3124	11	Fusion	ENSMUSG00000099481.7_ENSMUSG00000100254.2	novel	2298	11	NA	NA	-7	0	intron_retention	FALSE	canonical	3	7	junction_1	28.9048438847194	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714957	101732969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_+_101715150_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_123092.nnic	chr7	+	3068	10	Fusion	ENSMUSG00000099481.7_ENSMUSG00000100254.2	novel	2298	11	NA	NA	-15	0	intron_retention	FALSE	canonical	1	6	junction_7	32.9975681857442	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714702	101732969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101729735_101729812_101730689_101730818_101731247
transcript_123098.nic	chr7	+	3121	10	ISM	ENSMUSG00000070425.14	ENSMUST00000123372.8	4847	22	-224	13102	-224	-12564	5prime_fragment	FALSE	canonical	2	6	junction_1	30.7643372177013	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714695	101732969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_101715012_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_123100.known	chr7	+	3131	10	FSM	ENSMUSG00000099481.7	ENSMUST00000106950.8	3131	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	31.0606734006004	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714717	101732969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101715012_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_123126.known	chr7	-	1713	5	FSM	ENSMUSG00000070424.13	ENSMUST00000106937.8	1713	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.12132034355964	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATGGCTTTTATGACTG	NA	False	NA	NA	False	ATTAAA	-17	NA	101749436	101746086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_101746428_101746514_101746548_101746987_101747718_101748640_101748851_101749037
transcript_123128.known	chr7	-	6694	33	FSM	ENSMUSG00000063550.9	ENSMUST00000210682.2	6694	33	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_23	43.7886324967736	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGGTATTGACTTTCT	9970	False	NA	-6	True	AATAAA	-20	NA	101859383	101768604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_123129.nic	chr7	-	6646	33	NIC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_9	39.344581504319	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGGTATTGACTTTCT	9967	False	NA	-6	True	AATAAA	-20	NA	101859386	101768604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_123134.known	chr7	-	4052	23	FSM	ENSMUSG00000063550.9	ENSMUST00000070165.7	4052	23	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_13	31.0306766371922	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACATCTCAGGAAAATCC	9998	False	NA	-5	True	AATAAA	-15	NA	101859327	101783409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_123136.known	chr7	-	3748	23	FSM	ENSMUSG00000063550.9	ENSMUST00000211235.2	3748	23	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_13	14.0777064247632	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTTGATCTCTCTATA	9976	False	NA	NA	False	AAGAAA	-17	NA	101859349	101783684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_123140.nnic	chr7	-	3925	22	NIC	ENSMUSG00000063550.9	novel	4052	23	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_11	29.4626093799229	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACATCTCAGGAAAATCC	9961	False	NA	-5	True	AATAAA	-15	NA	101859392	101783409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_123143.known	chr7	-	3132	20	FSM	ENSMUSG00000063550.9	ENSMUST00000211022.2	3132	20	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_10	14.8011753669689	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTATGATGTGCAGTCT	9996	False	NA	NA	False	AGTAAA	-14	NA	101859357	101794534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_123161.known	chr7	+	2141	7	FSM	ENSMUSG00000030990.19	ENSMUST00000120879.8	2141	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	65.7809918509054	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	NA	False	NA	16	True	AATAAA	-23	NA	101859568	101887774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
transcript_123169.nic	chr7	+	2154	7	NIC	ENSMUSG00000030990.19	novel	2034	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	67.2210284558833	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	614	False	NA	9	True	AATAAA	-16	NA	101872254	101887767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_101872505_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
transcript_123170.nic	chr7	+	2166	7	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	61.1201003489578	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	614	False	NA	9	True	AATAAA	-16	NA	101872254	101887767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_101872505_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_123174.nic	chr7	+	1908	6	NIC	ENSMUSG00000030990.19	novel	1699	6	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	63.6948977548438	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	601	False	NA	9	True	AATAAA	-16	NA	101872241	101887767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_101872358_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
transcript_123175.nic	chr7	+	1920	6	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	55.9692772867401	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTGAGGTAGGTATG	601	False	NA	9	True	AATAAA	-16	NA	101872241	101887767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_101872358_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_123178.known	chr7	+	2034	7	FSM	ENSMUSG00000030990.19	ENSMUST00000156529.8	2034	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	43.1689188601655	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	594	False	NA	16	True	AATAAA	-23	NA	101872234	101887774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
transcript_123179.known	chr7	+	1033	3	FSM	ENSMUSG00000030990.19	ENSMUST00000124619.8	1033	3	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	18	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCGATGTCTGTTGTG	637	False	NA	NA	False	AGTAAA	-12	NA	101872277	101876318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101872358_101872585_101872698_101875477
transcript_123180.known	chr7	+	1201	7	FSM	ENSMUSG00000030990.19	ENSMUST00000033292.14	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_5	27.0657635317306	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCTGAGGTTCACTAAGG	635	False	NA	NA	False	NA	NA	NA	101872275	101886970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_123181.known	chr7	-	1269	2	FSM	ENSMUSG00000073982.12	ENSMUST00000098230.11	1269	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCTCCCTATGTG	6360	False	NA	-2	True	AATAAA	-18	NA	101899330	101888329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_101889520_101899251
transcript_123189.nnic	chr7	+	3105	13	NNC	ENSMUSG00000030987.6	novel	619	5	NA	NA	-555	-438	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	14.8847423745107	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTGAATTTCCCAAGTG	NA	False	NA	NA	False	NA	NA	NA	101916457	102086087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_101916571_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102077980_102078074_102080091_102080159_102084590
transcript_123191.nic	chr7	+	4285	13	NIC	ENSMUSG00000030987.6	novel	2183	13	NA	NA	-545	-438	combination_of_known_junctions	FALSE	canonical	3	47	junction_11	7.93856620135735	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTGAATTTCCCAAGTG	NA	False	NA	NA	False	NA	NA	NA	101916467	102086087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_101917761_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102077980_102078074_102080091_102080159_102084590
transcript_123192.nic	chr7	+	4723	13	NIC	ENSMUSG00000030987.6	novel	4085	12	NA	NA	-545	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_11	7.93856620135735	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGCTGTGACTCTTATT	NA	False	NA	23	True	AATAAA	-23	NA	101916467	102086525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_101917761_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102077980_102078074_102080091_102080159_102084590
transcript_123196.known	chr7	+	4085	12	FSM	ENSMUSG00000030987.6	ENSMUST00000033289.6	4085	12	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_10	17.5852116683732	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGCTGTGACTCTTATT	NA	False	NA	23	True	AATAAA	-23	NA	101917012	102086525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101917761_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102080091_102080159_102084590
transcript_123198.known	chr7	+	2504	3	FSM	ENSMUSG00000030987.6	ENSMUST00000210266.2	2504	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	11	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	101917025	102036931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_101917761_102003707_102003839_102035293
transcript_12320.known	chr10	+	2715	9	FSM	ENSMUSG00000034889.9	ENSMUST00000050867.8	2715	9	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	15.2786615905975	967	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTGATCTGAGTCA	5469	False	NA	16	True	AATAGA	-15	NA	81156936	81162076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81157281_81158271_81158840_81158954_81159101_81159452_81159616_81159743_81159859_81160136_81160330_81160702_81160823_81160923_81161211_81161297
transcript_123202.known	chr7	+	3997	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	1692	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGTGGCTATGAACGGC	NA	False	NA	NA	False	AATAAA	-12	NA	102090901	102118978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
transcript_123219.known	chr7	-	2793	8	FSM	ENSMUSG00000030966.14	ENSMUST00000033264.12	2793	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	2.61861468283191	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTTCTTTCATTCTACC	NA	False	NA	NA	False	AATAAA	-16	NA	102214693	102207127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_102208871_102209174_102209276_102209799_102209823_102210994_102211226_102212472_102212569_102212900_102213333_102213478_102213548_102214595
transcript_123223.known	chr7	-	2388	7	FSM	ENSMUSG00000073968.5	ENSMUST00000082175.7	2388	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	1.21335164821342	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATCACGAGTCTGCCTG	NA	False	NA	NA	False	ATTAAA	-28	NA	102336534	102326788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_102328045_102328242_102328344_102328880_102328904_102329343_102329605_102330869_102330966_102333254_102333719_102336347
transcript_123225.known	chr7	-	2301	6	FSM	ENSMUSG00000073968.5	ENSMUST00000210855.2	2301	6	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	1.95959179422654	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATCCACAGATCACGAGT	NA	False	NA	NA	False	ATTAAA	-21	NA	102336477	102326795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_102328045_102328242_102328344_102329343_102329605_102330869_102330966_102333254_102333719_102336347
transcript_123232.nnic	chr7	+	2750	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-10	-1043	intron_retention	TRUE	canonical	0	0	junction_8	239.859203492382	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGATTGTAGCTTTGGT	NA	False	NA	14	True	AATAAA	-19	NA	103867989	103883316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
transcript_123233.nnic	chr7	+	3545	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-10	-248	intron_retention	FALSE	canonical	0	0	junction_8	239.859203492382	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	13	True	AATAAA	-14	NA	103867989	103884111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
transcript_123235.nnic	chr7	+	3612	9	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-59	-248	intron_retention	FALSE	canonical	0	0	junction_8	276.31221018985	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	13	True	AATAAA	-14	NA	103868576	103884111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
transcript_123237.known	chr7	+	3827	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	0	0	0	0	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAGACTTGAAGGTGCA	NA	False	NA	NA	False	AATAAA	-18	NA	103868001	103884359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
transcript_123241.nic	chr7	+	3655	8	NIC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-59	-251	intron_retention	FALSE	canonical	2	115	junction_1	215.402423574185	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGATGGAGTCTTCTTAC	NA	False	NA	10	True	AATAAA	-11	NA	103868576	103884108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
transcript_123243.known	chr7	+	1490	3	FSM	ENSMUSG00000072244.12	ENSMUST00000144538.2	1490	3	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_1	31	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	103867999	103876940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_103868091_103874713_103875188_103876015
transcript_123244.known	chr7	+	2590	8	FSM	ENSMUSG00000056144.15	ENSMUST00000060315.12	2590	8	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	5.3642809587196	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGAATCTGTTCATT	NA	False	NA	7	True	ATTAAA	-15	NA	103893665	103911441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_103893814_103896737_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
transcript_123250.known	chr7	-	2484	8	FSM	ENSMUSG00000057143.16	ENSMUST00000130139.3	2484	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.9059520091609	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104002545	103989082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_103990581_103990825_103990853_103991084_103991183_103992262_103992286_103994105_103994337_103995855_103995952_103997134_103997611_104002510
transcript_123251.known	chr7	-	1407	2	FSM	ENSMUSG00000062369.3	ENSMUST00000076501.2	1407	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGGGATGCTTCAGACAA	NA	False	NA	NA	False	NA	NA	NA	104491711	104489518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_104490898_104491683
transcript_123262.nic	chr7	-	3607	13	NIC	ENSMUSG00000044465.20	novel	3521	13	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_12	109.915118765952	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGTGCTCATTCTTCT	NA	False	NA	-12	True	TATAAA	-12	NA	105049283	105027818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
transcript_123265.known	chr7	-	3521	13	FSM	ENSMUSG00000044465.20	ENSMUST00000122327.7	3521	13	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_12	109.388038905337	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGTGCTCATTCTTCT	NA	False	NA	-12	True	TATAAA	-12	NA	105049239	105027818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
transcript_123276.known	chr7	-	3443	12	FSM	ENSMUSG00000044465.20	ENSMUST00000048079.14	3443	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_4	97.8877751760945	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTGCTCATTCTTCTT	NA	False	NA	-11	True	TATAAA	-13	NA	105049209	105027817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
transcript_123281.known	chr7	-	10853	12	FSM	ENSMUSG00000044465.20	ENSMUST00000179474.9	10853	12	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_4	97.1164419950871	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTTCACATCTCAG	NA	False	NA	0	True	AATAAA	-16	NA	105049261	105020417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
transcript_123285.known	chr7	-	2855	12	FSM	ENSMUSG00000044465.20	ENSMUST00000118726.8	2855	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	116.98315199737	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTGCTCATTCTTCTT	NA	False	NA	-11	True	TATAAA	-13	NA	105049215	105027817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105033581_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
transcript_123287.nic	chr7	-	2851	12	NIC	ENSMUSG00000044465.20	novel	3521	13	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	116.391402937184	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGTGCTCATTCTTCT	NA	False	NA	-12	True	TATAAA	-12	NA	105049254	105027818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_105028337_105030286_105030450_105030605_105030785_105033581_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
transcript_123304.known	chr7	+	2484	6	FSM	ENSMUSG00000030897.6	ENSMUST00000033187.6	2484	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.13541565040626	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCACTGGGTTTATCT	NA	False	NA	NA	False	NA	NA	NA	105053774	105057949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105053961_105054095_105054198_105054376_105054484_105054688_105055335_105056007_105056358_105056856
transcript_123305.known	chr7	+	2573	5	FSM	ENSMUSG00000030898.16	ENSMUST00000033189.6	2573	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	1.6583123951777	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGGCTCAGATTATTCG	NA	False	NA	NA	False	GATAAA	-15	NA	105074937	105085546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105075383_105082789_105083042_105083201_105083452_105083726_105083903_105084096
transcript_123307.known	chr7	-	1662	2	FSM	ENSMUSG00000037060.4	ENSMUST00000047040.4	1662	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTTTAGATCTTGTTA	NA	False	NA	NA	False	AATAAA	-18	NA	105131507	105129289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105130427_105130982
transcript_123308.known	chr7	+	2412	6	FSM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	5.53534100123922	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTCCTATTTCTTCTTCC	NA	False	NA	11	True	AATAAA	-21	NA	105203566	105207596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105204045_105204428_105205202_105205713_105205886_105206124_105206202_105206556_105206703_105206830
transcript_123312.known	chr7	-	2878	14	FSM	ENSMUSG00000037032.17	ENSMUST00000189378.7	2878	14	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_6	14.1718113410527	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTCTGTCTGCGCTGCT	NA	False	NA	-42	True	NA	NA	NA	105230698	105207709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230341
transcript_123313.known	chr7	-	2712	14	FSM	ENSMUSG00000037032.17	ENSMUST00000191011.7	2712	14	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_13	40.0285401141316	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTCTTCCTGTGCTCAT	NA	False	NA	-22	True	AATAAA	-17	NA	105230860	105207689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230689
transcript_123319.nic	chr7	-	3068	13	NIC	ENSMUSG00000037032.17	novel	2690	15	NA	NA	19	0	intron_retention	FALSE	canonical	3	128	junction_3	10.9417650414466	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTTCCTGTGCTCA	NA	False	NA	-23	True	AATAAA	-16	NA	105230466	105207690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230341
transcript_123331.known	chr7	-	2841	12	FSM	ENSMUSG00000036989.17	ENSMUST00000106789.8	2841	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_9	7.22140985754018	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTAGGTTCTTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	105282744	105259854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105260418_105260535_105260677_105261813_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268418_105268589_105268822_105274612_105274779_105282583
transcript_123332.known	chr7	-	3016	12	FSM	ENSMUSG00000036989.17	ENSMUST00000057525.14	3016	12	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_11	13.9497326613206	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGGATGTTGTGTTTGC	NA	False	NA	NA	False	TTTAAA	-20	NA	105282767	105259676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105260418_105260535_105260677_105261813_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268418_105268589_105268822_105274612_105274779_105282609
transcript_123339.known	chr7	+	1972	9	FSM	ENSMUSG00000110234.3	ENSMUST00000142363.8	1972	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	160.684813765956	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGATTTTCACTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	105289768	105308249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105300278_105300479_105300708_105301514_105304828_105304991_105306093_105306298_105306380_105306492_105308117
transcript_123341.nic	chr7	-	1939	9	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	49.1030485306157	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCCCAGTGAGGTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	105289678	105284830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_105285601_105286017_105286193_105286327_105286486_105286858_105286933_105287069_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
transcript_123349.nic	chr7	-	2023	8	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	37	junction_3	33.0787557449287	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCCCAGTGAGGTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	105289625	105284830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_105285601_105286017_105286193_105286327_105286486_105286858_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
transcript_123350.known	chr7	-	2254	8	FSM	ENSMUSG00000030881.16	ENSMUST00000084782.10	2254	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_7	43.718953999101	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTAAGTAGCGAACAGC	NA	False	NA	NA	False	NA	NA	NA	105289558	105284325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288633_105289451
transcript_123351.known	chr7	-	1141	8	FSM	ENSMUSG00000030881.16	ENSMUST00000209550.2	1141	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	44.7975035747597	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTGGCTATCAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	105289523	105285431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288301_105288531_105288673_105289451
transcript_123354.nic	chr7	-	3662	7	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	26	0	intron_retention	FALSE	canonical	3	112	junction_2	9.86013297183269	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGTTTTTATTGTATT	NA	False	NA	NA	False	NA	NA	NA	105289597	105283413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
transcript_123358.known	chr7	-	938	7	FSM	ENSMUSG00000030881.16	ENSMUST00000210911.2	938	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	48.6312656631513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAACTTGGCTATCAAGA	NA	False	NA	NA	False	NA	NA	NA	105289533	105285434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287415_105287535_105288215_105288313_105288531_105288673_105289451
transcript_123362.nic	chr7	-	2267	7	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	4	0	intron_retention	FALSE	canonical	3	112	junction_2	9.86013297183269	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCCCAGTGAGGTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	105289619	105284830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
transcript_123369.known	chr7	+	529	4	FSM	ENSMUSG00000089847.9	ENSMUST00000210350.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	163.903087897154	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTTCTTGTCTTCAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	105289757	105291056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290368_105290828
transcript_123370.known	chr7	+	694	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTGCTTTCTTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	105289654	105291050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
transcript_123371.known	chr7	+	3273	3	FSM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	22.5	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTTTCCTTTCTTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	105289262	105292844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105289830_105289968_105290065_105290234
transcript_123373.known	chr7	+	1083	2	FSM	ENSMUSG00000089847.9	ENSMUST00000151193.2	1083	2	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTTACTCTCTTAGTAC	NA	False	NA	NA	False	NA	NA	NA	105289770	105290992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105289830_105289968
transcript_123376.known	chr7	+	1795	13	FSM	ENSMUSG00000030890.17	ENSMUST00000033182.10	1795	13	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	33.4937805171846	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGTGTGGGGACAGAGGG	NA	False	NA	28	True	AATAAA	-18	NA	105385798	105392132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
transcript_123378.known	chr7	+	1749	13	FSM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	93.7171794401764	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTCGTGTGGGGACAGA	NA	False	NA	25	True	AATAAA	-15	NA	105385931	105392129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105386014_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
transcript_123387.known	chr7	+	2278	8	FSM	ENSMUSG00000030890.17	ENSMUST00000149695.8	2278	8	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	37.712121150005	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGGCTCGTGTGGGGA	NA	False	NA	21	True	AATAAA	-11	NA	105385877	105392125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105390251_105390354_105391116_105391203_105391304_105391413_105391545_105391719
transcript_123389.known	chr7	-	4281	5	FSM	ENSMUSG00000043866.12	ENSMUST00000141116.2	4281	5	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_4	81.1861287413065	601	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCATCCCCTAAGGACAT	6439	False	NA	-12	True	AATAAA	-20	NA	105393568	105388599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105392271_105392432_105392548_105392634_105392700_105393036_105393192_105393293
transcript_123391.known	chr7	-	411	2	FSM	ENSMUSG00000030888.15	ENSMUST00000137902.2	411	2	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATCAGTATGTGTGAAT	9987	False	NA	NA	False	NA	NA	NA	105385580	105383898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105384264_105385534
transcript_123393.known	chr7	-	3558	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTTGTATTGTAAATGT	NA	False	NA	NA	False	NA	NA	NA	105401442	105394017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
transcript_123399.nic	chr7	-	2173	12	NIC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	-5	-142	combination_of_known_junctions	FALSE	canonical	3	32	junction_10	89.1434909764649	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACATTGGCTGCAATCT	NA	False	NA	NA	False	NA	NA	NA	105401447	105395267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105401188_105401261_105401377
transcript_1234.known	chr1	+	3162	7	FSM	ENSMUSG00000003135.16	ENSMUST00000003219.14	3162	7	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_2	52.6289421854131	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAGGAAAAAATATT	NA	False	NA	NA	False	NA	NA	NA	39574882	39585954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_39575419_39576496_39576662_39577351_39577505_39578953_39579157_39581480_39581684_39583972_39584070_39584149
transcript_123419.known	chr7	-	869	3	FSM	ENSMUSG00000030879.11	ENSMUST00000176158.2	869	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1127	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGGATTTATGGAAAGTAA	NA	False	NA	-5	True	GATAAA	-43	NA	105460165	105458863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105459352_105459495_105459726_105460014
transcript_123420.known	chr7	-	7300	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTCCTGTGATGGTAC	NA	False	NA	NA	False	ATTAAA	-39	NA	105460306	105452412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105459352_105459656_105459726_105460014
transcript_123422.known	chr7	-	380	3	FSM	ENSMUSG00000030879.11	ENSMUST00000176887.2	380	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1127.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAAGTGCTAGCGCCTCG	NA	False	NA	NA	False	NA	NA	NA	105460235	105459327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_105459352_105459590_105459726_105460014
transcript_123424.known	chr7	+	3272	11	FSM	ENSMUSG00000016626.11	ENSMUST00000084763.5	3272	11	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	2.19089023002066	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGCCACAAGTGTCAT	NA	False	NA	NA	False	AGTAAA	-11	NA	106766196	106797300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_106766289_106780365_106780453_106780877_106782460_106783934_106784109_106785754_106785920_106789229_106789401_106790265_106790437_106791652_106791824_106795248_106795420_106796353_106796525_106796983
transcript_123427.known	chr7	+	1472	1	FSM	ENSMUSG00000073894.2	ENSMUST00000098135.2	1472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGCTGCGTAGTAGTCT	NA	False	NA	20	True	NA	NA	NA	106808651	106810123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_106808700_106810100
transcript_123429.nnic	chr7	+	995	4	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	-26	-4406	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	8.98146239020499	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTATTGTGTGTTTGT	NA	False	NA	8	True	AATAAA	-15	NA	106842202	106895197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106894609
transcript_123432.known	chr7	+	3817	7	FSM	ENSMUSG00000062542.12	ENSMUST00000073459.12	3817	7	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	10.4628974104797	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCGTTGTCTCATTAAAT	NA	False	NA	NA	False	AGTAAA	-19	NA	106969996	107147863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_106970355_107024253_107024606_107035481_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726
transcript_123433.nic	chr7	+	3541	6	NIC	ENSMUSG00000062542.12	novel	3817	7	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	62.0064512772663	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGTCGTTGTCTCATTA	NA	False	NA	NA	False	AGTAAA	-16	NA	106969917	107147860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_106970355_107035481_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726
transcript_123436.known	chr7	+	1685	3	FSM	ENSMUSG00000051041.9	ENSMUST00000120990.2	1685	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTGCCTTAAGTATCTT	NA	False	NA	NA	False	AATACA	-24	NA	107166652	107190301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_107167102_107170243_107170533_107189354
transcript_123440.nic	chr7	+	991	6	ISM	ENSMUSG00000036528.17	ENSMUST00000040056.15	3310	25	-234	47195	-175	0	5prime_fragment	FALSE	canonical	3	32	junction_3	5.49181208709839	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGAGGTGAGTGTAATT	7070	False	NA	NA	False	AAAAAG	-31	NA	107194238	107296897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_107194587_107236420_107236518_107252224_107252440_107280968_107281062_107285066_107285181_107296773
transcript_123443.nnic	chr7	-	1393	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	9.77651506998175	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357293	107349171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
transcript_123446.nnic	chr7	-	2164	9	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-54	1	intron_retention	FALSE	canonical	3	29	junction_7	8.01171017948103	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACAATGTGTGGATATG	NA	False	NA	-4	True	AATAAA	-20	NA	107357293	107349170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
transcript_123450.nnic	chr7	-	1184	8	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-54	-2011	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	11.8528391501095	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGCTTTCATTTGTCTT	NA	False	NA	NA	False	ATTAAA	-42	NA	107357293	107351182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356818_107356912_107357164
transcript_123454.known	chr7	+	2514	8	FSM	ENSMUSG00000031029.7	ENSMUST00000033342.7	2514	8	0	0	0	0	multi-exon	FALSE	canonical	3	2245	junction_2	107.423632105296	1399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTCTGCAGAGAGTACTA	NA	False	NA	NA	False	TATAAA	-14	NA	108533623	108542158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_108534015_108536952_108537024_108537242_108537323_108537615_108537754_108539396_108539489_108539850_108539988_108540100_108540215_108540667
transcript_123460.known	chr7	+	5997	12	FSM	ENSMUSG00000031028.15	ENSMUST00000033341.12	5997	12	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	5.29306422836714	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTGTGTCCTTGGTTTTC	NA	False	NA	15	True	ATTAAA	-15	NA	108610031	108633667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_108610346_108619723_108619776_108620073_108620237_108621816_108621961_108623696_108623865_108624814_108624934_108625796_108625995_108626209_108626323_108626959_108627078_108628468_108628568_108628760_108628933_108629330
transcript_123461.known	chr7	-	1633	6	FSM	ENSMUSG00000048330.15	ENSMUST00000120876.2	1633	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	14.7837748900611	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTTATTCTTTGGGC	NA	False	NA	NA	False	NA	NA	NA	108682529	108637154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_108638091_108647157_108647301_108653571_108653666_108655950_108656024_108656989_108657217_108682369
transcript_123469.known	chr7	-	3258	5	FSM	ENSMUSG00000048330.15	ENSMUST00000133876.2	3258	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	4.55521678957215	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	108682518	108644588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
transcript_123472.known	chr7	-	5281	6	FSM	ENSMUSG00000048330.15	ENSMUST00000055993.13	5281	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	4.1182520563948	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTATTCAAAAAGTCACTT	NA	False	NA	NA	False	AATAAA	-30	NA	108682538	108633518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_108638091_108647157_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
transcript_123473.known	chr7	-	683	2	FSM	ENSMUSG00000048330.15	ENSMUST00000137385.2	683	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	108682529	108656693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_108657217_108682369
transcript_123474.known	chr7	-	912	4	FSM	ENSMUSG00000036111.9	ENSMUST00000207178.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	6.37704215656966	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTACAGTCTGTCTTCT	NA	False	NA	-107	True	NA	NA	NA	108774414	108737881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_108738184_108739788_108739915_108742662_108742877_108774144
transcript_123476.nnic	chr7	-	2220	13	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51201	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	19.7188573029304	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986823	108878429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108939575_108939687_108940495_108940847_108986659
transcript_123480.nnic	chr7	-	1801	11	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51158	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_10	9.45568612000208	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986866	108878429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108986659
transcript_123483.known	chr7	+	1158	5	FSM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	3855.66202972978	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCTTTAAATCTGGAAG	NA	False	NA	20	True	AATAAA	-24	NA	109118353	109121574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109118430_109118791_109118856_109119124_109119201_109119674_109119850_109120807
transcript_123485.nic	chr7	+	760	5	NIC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	6920.42061582965	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118403	109120973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_109118683_109118791_109118856_109119124_109119201_109119674_109119850_109120807
transcript_123488.known	chr7	+	350	3	FSM	ENSMUSG00000046364.15	ENSMUST00000149143.8	350	3	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	4486.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAACTGCTGACCTTATT	NA	False	NA	NA	False	NA	NA	NA	109118405	109119386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109118430_109118791_109118856_109119124
transcript_123491.nic	chr7	-	4328	21	NIC	ENSMUSG00000031024.14	novel	4255	20	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_20	42.4156810625504	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAGAGTCTTATTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	109302826	109123126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109216264_109216355_109302744
transcript_123492.known	chr7	-	4612	20	FSM	ENSMUSG00000031024.14	ENSMUST00000077909.9	4612	20	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_19	35.017605386157	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAGAGTCTTATTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	109215960	109123126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109215504
transcript_123495.nic	chr7	-	3077	20	NIC	ENSMUSG00000031024.14	novel	4255	20	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_17	59.0346628070525	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAGAGTCTTATTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	109302826	109123126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109169213_109169319_109216264_109216355_109302744
transcript_123496.known	chr7	-	3161	19	FSM	ENSMUSG00000031024.14	ENSMUST00000084738.5	3161	19	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_17	55.6475072373273	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAGAGTCTTATTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	109215760	109123126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109169213_109169319_109215504
transcript_123503.known	chr7	-	4255	20	FSM	ENSMUSG00000031024.14	ENSMUST00000079282.8	4255	20	0	0	0	0	multi-exon	TRUE	canonical	3	111	junction_19	31.6037621800557	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTGTGTTCCTTTCAC	NA	False	NA	2	True	AATAAA	-26	NA	109216354	109123117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109216264
transcript_123504.known	chr7	-	3004	19	FSM	ENSMUSG00000031024.14	ENSMUST00000168005.8	3004	19	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_17	53.6950982888281	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTGTGTTCCTTTCAC	NA	False	NA	2	True	AATAAA	-26	NA	109216354	109123117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109169213_109169319_109216264
transcript_123507.known	chr7	+	1028	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302896	109311396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
transcript_123511.nic	chr7	+	925	5	NIC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	-11	0	intron_retention	FALSE	canonical	3	347	junction_1	28.0624304008046	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCATCAATCTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	109302947	109311175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
transcript_123512.nic	chr7	+	1146	5	NIC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	-11	0	intron_retention	FALSE	canonical	3	347	junction_1	28.0624304008046	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302947	109311396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
transcript_123520.known	chr7	-	1703	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTTCTGTTCTCCAG	NA	False	NA	2	True	AATAAA	-19	NA	109351486	109335040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
transcript_123524.known	chr7	-	3910	7	FSM	ENSMUSG00000034825.15	ENSMUST00000033331.7	3910	7	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_6	3.54338193757822	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTTGTCTGAGTCTC	NA	False	NA	-5	True	AATAAA	-15	NA	109380752	109357265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109360397_109360853_109360949_109361027_109361081_109362690_109362831_109364672_109364756_109365679_109365842_109380506
transcript_123526.known	chr7	-	3563	22	FSM	ENSMUSG00000007279.15	ENSMUST00000106729.8	3563	22	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_18	1.71560795568113	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATTAGAAACAAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	109464886	109397896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109398613_109399780_109399861_109403814_109403968_109405249_109405448_109407615_109407778_109408284_109408453_109423971_109424179_109424525_109424682_109428241_109428347_109430003_109430088_109430334_109430452_109430873_109430997_109432215_109432333_109436200_109436324_109437286_109437404_109442386_109442477_109443083_109443201_109446129_109446256_109451640_109451776_109456727_109456854_109463311_109463435_109464666
transcript_123530.known	chr7	-	5004	23	FSM	ENSMUSG00000035901.15	ENSMUST00000080437.13	5004	23	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_12	18.0282148014056	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACTGGTCACTGGCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	109559677	109492986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109494023_109495449_109495619_109496153_109496278_109497110_109497194_109497714_109497897_109498250_109498370_109498930_109499077_109500266_109500389_109504376_109504506_109504902_109504988_109507537_109507623_109511121_109511275_109513927_109514060_109515417_109515512_109516591_109516743_109517800_109518036_109518468_109518685_109520400_109520719_109526033_109526222_109532819_109533478_109533899_109534010_109534688_109534761_109559280
transcript_123535.known	chr7	-	3840	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	0	0	0	0	multi-exon	TRUE	canonical	3	346	junction_6	24.644133852366	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATAATTTTCCCACCAA	NA	False	NA	NA	False	AATAAA	-25	NA	109585658	109571393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
transcript_123541.known	chr7	-	884	1	FSM	ENSMUSG00000047554.15	ENSMUST00000207300.2	884	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	109585494	109584610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109584600_109585500
transcript_123542.known	chr7	-	1544	3	FSM	ENSMUSG00000047554.15	ENSMUST00000151587.2	1544	3	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_2	30	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	109585466	109579196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109580325_109581862_109581981_109585168
transcript_123543.nnic	chr7	+	3503	26	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	-48	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	233.88532574747	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCTTGATCTGATTGC	7150	False	NA	23	True	ATTAAA	-18	NA	109617432	109655324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223_109654345_109655160
transcript_123546.known	chr7	+	4763	25	FSM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	191.489515052391	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTTGTGTTTTTC	7198	False	NA	NA	False	AAGAAA	-2	NA	109617480	109655816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
transcript_123555.nic	chr7	+	1433	12	ISM	ENSMUSG00000066232.5	ENSMUST00000207277.2	3784	21	-36	7295	5	-4683	5prime_fragment	FALSE	canonical	0	0	junction_2	236.104088265891	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGAGCCTTGCATATGAT	7203	False	NA	NA	False	NA	NA	NA	109617485	109643893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824
transcript_123557.known	chr7	+	1883	8	FSM	ENSMUSG00000066232.5	ENSMUST00000208951.2	1883	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	376.224422820383	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTCTTGATCTGATT	7239	False	NA	21	True	ATTAAA	-16	NA	109617521	109655322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109617716_109626277_109626356_109642035_109642093_109643615_109643693_109650680_109650735_109651917_109652125_109653206_109653324_109654223
transcript_123559.known	chr7	+	3003	16	FSM	ENSMUSG00000061079.15	ENSMUST00000084727.11	3003	16	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	55.3423285861133	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAATACTTTTTGTTTG	NA	False	NA	12	True	AATACA	-10	NA	109660916	109694594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
transcript_123561.known	chr7	+	2631	16	FSM	ENSMUSG00000061079.15	ENSMUST00000211798.2	2631	16	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_4	56.3191698171137	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGCAGCTTGTGCCTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	109660916	109694225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671328_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
transcript_123571.nnic	chr7	+	3345	12	NNC	ENSMUSG00000031016.10	novel	3419	11	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	116.831092318061	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTAAATCTTCACGGTG	NA	False	NA	26	True	ATTAAA	-23	NA	109721235	109742493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_109721967_109722057_109722133_109723662_109723869_109725013_109725075_109725202_109725376_109725907_109726030_109730035_109730183_109733961_109734058_109734844_109734931_109738355_109738527_109738768_109738915_109741162
transcript_123577.known	chr7	+	3419	11	FSM	ENSMUSG00000031016.10	ENSMUST00000033326.10	3419	11	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	26.6084573021436	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTAAATCTTCACGGTG	NA	False	NA	26	True	ATTAAA	-23	NA	109721252	109742493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109722133_109723662_109723869_109725013_109725075_109725202_109725376_109725907_109726030_109730035_109730183_109733961_109734058_109734844_109734931_109738355_109738527_109738768_109738915_109741162
transcript_123583.nnic	chr7	+	3309	10	NIC	ENSMUSG00000031016.10	novel	3419	11	NA	NA	-37	0	combination_of_known_splicesites	TRUE	canonical	3	29	junction_5	119.043409449383	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTAAATCTTCACGGTG	NA	False	NA	26	True	ATTAAA	-23	NA	109721215	109742493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_109722133_109723662_109723869_109725013_109725075_109725202_109725376_109725907_109726030_109733961_109734058_109734844_109734931_109738355_109738527_109738768_109738915_109741162
transcript_123604.known	chr7	+	4027	12	FSM	ENSMUSG00000031015.9	ENSMUST00000033325.9	4027	12	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_6	36.1790771003727	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAACTGGTTACATTAA	NA	False	NA	77	True	ATTAAA	-20	NA	109820917	109882713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042_109865190_109866988_109867098_109869106_109869289_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880437
transcript_123614.known	chr7	+	1163	5	FSM	ENSMUSG00000031015.9	ENSMUST00000210743.2	1163	5	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	17.753520777581	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATGCAGTAAGA	NA	False	NA	NA	False	ATTAAA	-6	NA	109820938	109865484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042
transcript_123618.known	chr7	+	1670	4	FSM	ENSMUSG00000031015.9	ENSMUST00000210513.2	1670	4	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	8.83176086632785	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAAAAATATACAC	NA	False	NA	NA	False	TTTAAA	-11	NA	109820961	109864286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086
transcript_123620.known	chr7	-	7090	40	FSM	ENSMUSG00000038371.16	ENSMUST00000164759.8	7090	40	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_32	14.3447273642903	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCTGAGTGCTGTGATG	NA	False	NA	NA	False	ATTAAA	-20	NA	110214129	109907219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913272_109914179_109914414_109916102_109916231_109919879_109920007_109928967_109929154_109929816_109929919_109934498_109934676_109939096_109939282_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159554_110213913
transcript_123624.nic	chr7	-	3464	24	ISM	ENSMUSG00000038371.16	ENSMUST00000033058.14	7154	41	-216	57715	-214	11519	5prime_fragment	FALSE	canonical	3	82	junction_16	12.0559502208573	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACACCTCCTTCCGGTAAG	NA	False	NA	NA	False	AAGAAA	-2	NA	110214343	109964943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159554_110213913
transcript_123627.known	chr7	-	2961	18	FSM	ENSMUSG00000038371.16	ENSMUST00000165449.8	2961	18	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	13.490737563232	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAAAAAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	110214121	109976462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394_110027600_110038046_110038146_110040156_110040286_110040658_110040773_110041496_110041575_110046220_110046335_110049101_110049211_110051035_110051169_110060343_110060450_110062062_110062174_110063794_110063915_110088427_110088566_110159464_110159554_110213913
transcript_12363.known	chr10	+	1765	3	FSM	ENSMUSG00000034881.9	ENSMUST00000105325.4	1765	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGGAGCACTCCCCTA	3846	False	NA	NA	False	AATAAA	-15	NA	81164564	81171006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81164752_81168225_81169090_81170292
transcript_123632.known	chr7	+	1390	4	FSM	ENSMUSG00000030790.16	ENSMUST00000033054.10	1390	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCGGTTCATGCAT	5113	False	NA	NA	False	AATAAA	-16	NA	110226867	110229027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_110227029_110227463_110227584_110227731_110227882_110228068
transcript_123637.known	chr7	+	3489	15	FSM	ENSMUSG00000005686.18	ENSMUST00000170374.8	3489	15	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	9.21539306745812	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGAACTTTAGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	110367412	110411126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_110367587_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
transcript_123639.known	chr7	+	3337	15	FSM	ENSMUSG00000005686.18	ENSMUST00000213373.2	3337	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	15.4927567012485	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGAACTTTAGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	110368117	110411126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_110368140_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
transcript_123648.known	chr7	-	1101	6	FSM	ENSMUSG00000030788.17	ENSMUST00000106682.10	1101	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	45.7864608809198	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTACAAATACACTGTTGT	NA	False	NA	NA	False	NA	NA	NA	110443333	110415877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443005
transcript_123649.known	chr7	-	4032	6	FSM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	5.45527267879434	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTAGGTGTTGGGAGTTT	NA	False	NA	0	True	ATTAAA	-22	NA	110443664	110412737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443545
transcript_123655.known	chr7	+	4300	25	FSM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	10.558616149856	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGCCTGTGTGTCCTCT	499	False	NA	31	True	AATAAA	-17	NA	110628157	110655584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110652588_110652686_110653020_110653134_110654565
transcript_123657.nic	chr7	+	3236	22	ISM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	-249	4002	-249	5	5prime_fragment	FALSE	canonical	3	158	junction_8	9.61456755642458	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAGAAGGAAGGGCA	250	False	NA	-31	True	NA	NA	NA	110627908	110651582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508
transcript_123659.nic	chr7	+	3131	21	ISM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	-249	4812	-249	-805	5prime_fragment	FALSE	canonical	3	158	junction_8	9.85126895379473	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGAAGAAAAGAGGTGGAG	250	False	NA	NA	False	NA	NA	NA	110627908	110650772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656
transcript_12366.known	chr10	-	1540	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105324.9	1540	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	161.527966465926	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186260	81181884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186106
transcript_123661.nic	chr7	+	2763	20	ISM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	4	5296	4	-1289	5prime_fragment	FALSE	canonical	3	158	junction_8	9.85405972555435	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTCTACACTGAGCTCAG	503	False	NA	NA	False	NA	NA	NA	110628161	110650288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151
transcript_123667.known	chr7	+	765	2	FSM	ENSMUSG00000005609.17	ENSMUST00000146709.2	765	2	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATATTTGTTCCTGCCTT	561	False	NA	NA	False	NA	NA	NA	110628219	110630016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_110628389_110629420
transcript_123668.known	chr7	+	2987	16	FSM	ENSMUSG00000005609.17	ENSMUST00000152019.2	2987	16	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	8.40211613556701	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAATGAAAAAAAAAGAC	543	False	NA	NA	False	NA	NA	NA	110628201	110646854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969
transcript_12367.known	chr10	-	1463	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105323.8	1463	10	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_9	133.860992944542	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAATATTTGTGGCTTT	NA	False	NA	-8	True	AATAAA	-20	NA	81186314	81181881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186240
transcript_123695.known	chr7	-	7995	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	0	0	0	0	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	6137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAGAGAAGAAACACA	NA	False	NA	NA	False	NA	NA	NA	110682237	110666956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
transcript_12373.known	chr10	-	1621	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	0	0	0	0	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186258	81181884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
transcript_123734.nic	chr7	-	3814	21	ISM	ENSMUSG00000005610.18_ENSMUSG00000110424.2	ENSMUST00000161051.8	3548	22	-128	0	-115	0	intron_retention	FALSE	canonical	3	1102	junction_8	1132.63140517999	1376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682352	110671138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
transcript_12380.nic	chr10	-	1684	9	NIC	ENSMUSG00000020232.18	novel	1463	10	NA	NA	-4	0	intron_retention	FALSE	canonical	3	11	junction_4	185.412883856543	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAATATTTGTGGCTTT	NA	False	NA	-8	True	AATAAA	-20	NA	81186264	81181881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183397_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
transcript_123822.known	chr7	+	4697	29	FSM	ENSMUSG00000059263.10	ENSMUST00000215510.2	4697	29	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_12	65.7666231799216	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATGAATGAATCTTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	111622712	111709690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_111622954_111652423_111652628_111654048_111654163_111655681_111655821_111658178_111658276_111662452_111662599_111663571_111663652_111666291_111666442_111673678_111673775_111673863_111674017_111676998_111677167_111679378_111679439_111681636_111681769_111682294_111682372_111683063_111683120_111685201_111685315_111686207_111686313_111686972_111687181_111688731_111688848_111690611_111690732_111691912_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
transcript_123824.known	chr7	+	5540	28	FSM	ENSMUSG00000059263.10	ENSMUST00000106653.4	5540	28	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_11	29.763171284045	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTTATCTTAGTCATT	NA	False	NA	4	True	AATAAA	-16	NA	111622710	111710591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_111622954_111652423_111652628_111654048_111654163_111655681_111655821_111658178_111658276_111662452_111662599_111663571_111663652_111666291_111666442_111673678_111673775_111673863_111674017_111676998_111677167_111681636_111681769_111682294_111682372_111683063_111683120_111685201_111685315_111686207_111686313_111686972_111687181_111688731_111688848_111690611_111690732_111691912_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
transcript_123838.known	chr7	-	3359	8	FSM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	18.9198092927352	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATGGTATGGGTCCATT	NA	False	NA	-1	True	AATAAA	-23	NA	111758264	111715223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389_111757626_111758172
transcript_123839.nic	chr7	-	3301	7	ISM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	605	0	605	0	3prime_fragment	FALSE	canonical	3	37	junction_5	9.03234926989282	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATGGTATGGGTCCATT	NA	False	NA	-1	True	AATAAA	-23	NA	111757659	111715223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389
transcript_123840.nic	chr7	-	2311	7	ISM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	605	990	605	-990	3prime_fragment	FALSE	canonical	3	37	junction_5	9.03234926989282	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAACAATCTGTAGTATA	NA	False	NA	NA	False	AATAAA	-26	NA	111757659	111716213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389
transcript_123844.known	chr7	+	4454	13	FSM	ENSMUSG00000030770.16	ENSMUST00000033030.14	4454	13	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	5.24603024517905	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCGCTGTTTCTTCCAA	3329	False	NA	NA	False	AATGAA	-13	NA	112026912	112190899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_112027308_112143383_112143474_112143939_112144011_112146717_112146821_112159135_112159277_112166969_112167086_112172077_112172137_112174561_112174582_112175606_112175669_112176142_112176212_112178862_112178965_112180156_112180230_112187746
transcript_123847.known	chr7	+	2841	1	FSM	ENSMUSG00000055320.19	ENSMUST00000210510.2	2841	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAATAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	112438840	112441681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_112438800_112441700
transcript_123848.known	chr7	+	3496	1	FSM	ENSMUSG00000098132.2	ENSMUST00000182858.2	3496	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTTTTGAGAGACTTTA	NA	False	NA	NA	False	AATGAA	-22	NA	112553168	112556664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_112553200_112556700
transcript_123851.known	chr7	+	2908	20	FSM	ENSMUSG00000055116.9	ENSMUST00000047321.9	2908	20	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_10	14.0300429530047	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	3747	False	NA	NA	False	AATAAA	-20	NA	112806671	112913333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_112806852_112833830_112833904_112873832_112873961_112878663_112878790_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
transcript_123855.nnic	chr7	+	2811	19	NIC	ENSMUSG00000055116.9	novel	2908	20	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	21.9418423211098	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	3716	False	NA	NA	False	AATAAA	-20	NA	112806640	112913333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_112806852_112833830_112833904_112878663_112878790_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
transcript_123861.known	chr7	-	2581	11	FSM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_8	39.4138300600183	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACACCTTGGCTAGATTC	NA	False	NA	1	True	AATAAA	-34	NA	112968546	112914832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078_112968166_112968405
transcript_123864.nnic	chr7	-	2460	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_7	47.410734836931	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGACCAACTTTATGA	NA	False	NA	-16	True	AATAAA	-17	NA	112968600	112914849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
transcript_123866.known	chr7	-	2394	9	FSM	ENSMUSG00000038187.15	ENSMUST00000119278.8	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	50.6814500088543	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGACCAACTTTATGA	NA	False	NA	-16	True	AATAAA	-17	NA	112968599	112914849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112968078_112968166_112968405
transcript_123869.known	chr7	+	4962	13	FSM	ENSMUSG00000030759.17	ENSMUST00000033018.15	4962	13	0	0	0	0	multi-exon	FALSE	canonical	2	280	junction_11	48.5005727343044	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTACTCCTTTGCAA	NA	False	NA	14	True	AATAAA	-22	NA	113113040	113170718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
transcript_123876.known	chr7	+	3972	13	FSM	ENSMUSG00000030759.17	ENSMUST00000164745.8	3972	13	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	119.775136540658	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGGCAAAACTGTATT	NA	False	NA	2	True	AATAAA	-16	NA	113113068	113169665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_113113236_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
transcript_123890.known	chr7	-	2275	6	FSM	ENSMUSG00000055723.7	ENSMUST00000069449.7	2275	6	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	27.4779911929529	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACGCTTGACGGCTCCTTT	NA	False	NA	-1	True	ATTAAA	-21	NA	113717016	113646016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_113647487_113649535_113649655_113657774_113657884_113658161_113658265_113659566_113659655_113716630
transcript_123894.known	chr7	-	3346	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTATCTGTGGGATTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	113853946	113814793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
transcript_123900.nic	chr7	-	2155	15	ISM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	-29	11392	-29	-11357	5prime_fragment	FALSE	canonical	3	435	junction_5	29.6321839649158	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGTAAGGTATATACGAA	NA	False	NA	-4	True	NA	NA	NA	113853975	113826185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
transcript_123902.nic	chr7	-	1679	13	ISM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	-29	17769	-29	-17734	5prime_fragment	FALSE	canonical	3	435	junction_3	29.7838276399943	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTGGCGAGTTAAAACC	NA	False	NA	15	True	AATAAA	-5	NA	113853975	113832562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
transcript_123912.known	chr7	-	960	10	FSM	ENSMUSG00000030751.19	ENSMUST00000135570.8	960	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_9	875.758056108824	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGATGTAAGTTTT	NA	False	NA	NA	False	TTTAAA	-39	NA	113875261	113864029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875195
transcript_123913.known	chr7	-	1201	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	0	0	0	0	multi-exon	TRUE	canonical	3	2548	junction_6	196.061655709387	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875353	113863840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
transcript_123918.known	chr7	-	959	5	FSM	ENSMUSG00000030751.19	ENSMUST00000154909.2	959	5	0	0	0	0	multi-exon	FALSE	canonical	3	2548	junction_1	245.338923736125	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	113875289	113869723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
transcript_123919.known	chr7	-	956	1	FSM	ENSMUSG00000030751.19	ENSMUST00000210966.2	956	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113875302	113874346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_113874300_113875300
transcript_123920.known	chr7	-	1627	5	FSM	ENSMUSG00000030670.17	ENSMUST00000032908.15	1627	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.58602010819715	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGTACTAGAGCAATAACAA	NA	False	NA	NA	False	AGTAAA	-21	NA	114162207	114149400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_114149683_114150987_114151318_114151955_114152589_114153825_114153968_114161967
transcript_123922.nic	chr7	-	1002	5	NIC	ENSMUSG00000030669.14	novel	994	5	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	37.532485928859	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2050	False	NA	0	True	ATTAAA	-27	NA	114235576	114230712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235422
transcript_123923.known	chr7	-	994	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2034	False	NA	0	True	ATTAAA	-27	NA	114235592	114230712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
transcript_123924.nic	chr7	-	2879	4	NIC	ENSMUSG00000030669.14	novel	994	5	NA	NA	-17	0	intron_retention	FALSE	canonical	3	87	junction_3	3.77123616632825	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2017	False	NA	0	True	ATTAAA	-27	NA	114235609	114230712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_114231141_114231650_114233844_114234361_114234457_114235446
transcript_123925.known	chr7	-	830	4	FSM	ENSMUSG00000030669.14	ENSMUST00000032907.9	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	40.2022663816634	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGAACCATGGTGGTCA	2079	False	NA	NA	False	AATAAA	-16	NA	114235547	114232527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_114233021_114233702_114233844_114234361_114234457_114235446
transcript_123926.nnic	chr7	-	895	2	Genic_Genomic	ENSMUSG00000086583.4	novel	1019	1	NA	NA	-2	19	multi-exon	FALSE	canonical	3	397	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTCTCAGACATGCTGG	NA	False	NA	NA	False	AATAAA	-34	NA	114305472	114304432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr7_-_114304872_114305016
transcript_123927.known	chr7	-	1019	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6083	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-15	NA	114305470	114304451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_114304500_114305500
transcript_123928.known	chr7	+	2321	13	FSM	ENSMUSG00000048782.16	ENSMUST00000169913.8	2321	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.01036297108185	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATTTTTTATTTTCTGCT	NA	False	NA	NA	False	AATAAA	-19	NA	114345000	114449615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_114345242_114368166_114368268_114390186_114390533_114391480_114391534_114393204_114393329_114403713_114403828_114410837_114410964_114428268_114428441_114433987_114434167_114441357_114441425_114444251_114444408_114445686_114445764_114449050
transcript_123932.known	chr7	+	1430	5	FSM	ENSMUSG00000030663.13	ENSMUST00000151254.2	1430	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	766.33690371794	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	29	True	AATAAA	-20	NA	115692600	115704445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702429_115702556_115703446
transcript_123934.known	chr7	+	927	5	FSM	ENSMUSG00000030663.13	ENSMUST00000106608.8	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	736.785755834082	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTATACTTTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	115692570	115704066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_115692623_115698674_115698759_115701178_115701240_115702445_115702556_115703446
transcript_123937.known	chr7	+	1153	3	FSM	ENSMUSG00000030663.13	ENSMUST00000106607.2	1153	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	845.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGATTGTGATGCCTT	NA	False	NA	26	True	AATAAA	-17	NA	115692575	115704442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_115692623_115702445_115702556_115703446
transcript_123938.nic	chr7	+	300	2	ISM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	-19	5715	-19	-2496	5prime_fragment	FALSE	canonical	3	1867	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTGAGACTCATGGGTG	NA	False	NA	NA	False	AAGAAA	-11	NA	115692516	115698730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_115692761_115698674
transcript_123942.known	chr7	-	5149	27	FSM	ENSMUSG00000045659.19	ENSMUST00000181998.8	5149	27	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	26.6807778245958	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTGTCCTGGCTCTTGCT	NA	False	NA	-6	True	ATTAAA	-13	NA	115907611	115722727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_115724056_115727788_115727929_115728626_115728761_115731855_115732012_115734273_115734475_115735152_115735257_115736221_115736340_115736424_115736614_115739511_115739739_115739850_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776194_115779628_115779734_115780408_115780521_115788504_115788589_115907159_115907218_115907306_115907384_115907485
transcript_123958.known	chr7	-	3476	23	FSM	ENSMUSG00000045659.19	ENSMUST00000182487.8	3476	23	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_11	21.5147460482494	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTCCACAACTCCAGCC	NA	False	NA	NA	False	GGGGCT	-1	NA	115907590	115734167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_115734475_115735152_115735257_115736221_115736340_115736424_115736614_115739511_115739739_115739850_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776194_115779628_115779734_115780408_115780521_115788504_115788589_115907159_115907218_115907306_115907384_115907485
transcript_123970.nic	chr7	-	2545	18	ISM	ENSMUSG00000045659.19	ENSMUST00000182487.8	3476	23	-15	5684	6	2081	5prime_fragment	FALSE	canonical	3	231	junction_6	21.1023211632633	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGACAGCTAGCCATCT	NA	False	NA	NA	False	AATAAA	-40	NA	115907605	115739851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776194_115779628_115779734_115780408_115780521_115788504_115788589_115907159_115907218_115907306_115907384_115907485
transcript_123973.known	chr7	-	589	6	FSM	ENSMUSG00000090862.4	ENSMUST00000170953.3	589	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4075.24362952695	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTGGTTCTTTCTGC	NA	False	NA	0	True	AATAAA	-20	NA	115933430	115930739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
transcript_123975.known	chr7	-	1150	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205906.2	1150	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4265.5784118335	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933401	115930746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_115930819_115931613_115931715_115932163_115933010_115933134_115933184_115933319
transcript_123978.known	chr7	-	2363	3	FSM	ENSMUSG00000090862.4	ENSMUST00000205548.2	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	9102	junction_2	1081.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933370	115930746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_115933010_115933134_115933184_115933319
transcript_123979.known	chr7	-	653	5	FSM	ENSMUSG00000090862.4	ENSMUST00000206963.2	653	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4507.63410782197	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933365	115930746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134
transcript_123980.known	chr7	-	5670	34	FSM	ENSMUSG00000030660.10	ENSMUST00000206219.2	5670	34	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_32	16.3820323083798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACAGCCTTTACCACTG	NA	False	NA	NA	False	NA	NA	NA	116042684	115938961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457_115975669_115975748_115975795_115977854_115977999_115987078_115987143_115987276_115987357_115989678_115989791_115990507_115990629_115993435_115993594_116005094_116005199_116016687_116017817_116041825_116041914_116042538
transcript_123981.known	chr7	-	8044	33	FSM	ENSMUSG00000030660.10	ENSMUST00000170430.3	8044	33	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_32	13.7259733261434	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTCATTTCCTTCC	NA	False	NA	NA	False	AATAAA	-5	NA	116042684	115936499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457_115975669_115975748_115975795_115977854_115977999_115987078_115987143_115987276_115987357_115989678_115989791_115990507_115990629_115993435_115993594_116005094_116005199_116016687_116017817_116042538
transcript_123986.known	chr7	+	750	1	FSM	ENSMUSG00000108461.2	ENSMUST00000206201.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTGGATGAAGTTCTGC	NA	False	NA	NA	False	AATAAA	-17	NA	116042809	116043559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_116042800_116043600
transcript_123987.known	chr7	+	1685	14	FSM	ENSMUSG00000030659.15	ENSMUST00000032895.15	1685	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	11.132340009308	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103603	116139819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
transcript_123988.nnic	chr7	+	1515	13	NIC	ENSMUSG00000030659.15	novel	1685	14	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	13.8283123417944	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103602	116139819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_116103720_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
transcript_123990.known	chr7	-	1342	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCTTGCCAGTCGCCT	NA	False	NA	NA	False	NA	NA	NA	116425086	116423744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_116423700_116425100
transcript_123991.known	chr7	+	9020	12	FSM	ENSMUSG00000030657.12	ENSMUST00000032892.7	9020	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.1242402628269	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATTTTATGGTTACTTT	NA	False	NA	NA	False	AATAAA	-21	NA	116980213	117272803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_116980756_117074726_117074766_117147818_117148333_117191100_117191274_117192763_117192967_117221146_117221228_117233826_117234044_117236821_117236999_117242704_117242968_117249840_117250037_117255634_117255969_117266522
transcript_123994.known	chr7	-	5179	5	FSM	ENSMUSG00000008683.17	ENSMUST00000131374.8	5179	5	0	0	0	0	multi-exon	FALSE	canonical	3	7367	junction_4	1521.10568337641	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCTGAATGGCTTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	117715411	117703594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715358
transcript_124000.known	chr7	-	2171	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	0	0	0	0	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTTTGTTAACTCTGA	NA	False	NA	-11	True	ATTAAA	-25	NA	117728885	117718113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
transcript_124005.known	chr7	-	542	5	FSM	ENSMUSG00000030654.10	ENSMUST00000203154.3	542	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	977.48375945588	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTAGTGTGGCTGCCGC	NA	False	NA	NA	False	GATAAA	-30	NA	117728799	117719522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117728691
transcript_124011.known	chr7	-	454	3	FSM	ENSMUSG00000030654.10	ENSMUST00000206536.2	454	3	0	0	0	0	multi-exon	FALSE	canonical	3	2507	junction_2	41.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAGAATTTCATACCTG	NA	False	NA	NA	False	NA	NA	NA	117728795	117725522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_117725739_117726356_117726491_117728691
transcript_124012.nic	chr7	-	5393	33	ISM	ENSMUSG00000030655.16	ENSMUST00000032891.15	15557	63	-67	37367	-34	-10870	5prime_fragment	TRUE	canonical	3	32	junction_9	8.23649462757064	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAGAAGAGAAAGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	117842927	117767897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_117767970_117768080_117768226_117770908_117771194_117772276_117772526_117776060_117776182_117777587_117777748_117777975_117778124_117779594_117779705_117781596_117781799_117781966_117782110_117782961_117783117_117783695_117783861_117784049_117784247_117784589_117784790_117785256_117785398_117788293_117788396_117788481_117788570_117789005_117789125_117789711_117789874_117790007_117790139_117792672_117792943_117794258_117794361_117795033_117795259_117797413_117797588_117799883_117799982_117801752_117801826_117802226_117802353_117806023_117806238_117807245_117807305_117809961_117810099_117811642_117811799_117812111_117812276_117842427
transcript_124016.nic	chr7	-	4210	26	ISM	ENSMUSG00000030655.16	ENSMUST00000032891.15	15557	63	-67	49067	-34	10383	5prime_fragment	FALSE	canonical	3	32	junction_2	6.67532770731145	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTATTTGGGAATGGTTT	NA	False	NA	NA	False	AAGAAA	-4	NA	117842927	117779597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_117779705_117781596_117781799_117781966_117782110_117782961_117783117_117783695_117783861_117784049_117784247_117784589_117784790_117785256_117785398_117788293_117788396_117788481_117788570_117789005_117789125_117789711_117789874_117790007_117790139_117792672_117792943_117794258_117794361_117795033_117795259_117797413_117797588_117799883_117799982_117801752_117801826_117802226_117802353_117806023_117806238_117807245_117807305_117809961_117810099_117811642_117811799_117812111_117812276_117842427
transcript_124023.known	chr7	-	2287	13	FSM	ENSMUSG00000030655.16	ENSMUST00000208209.2	2287	13	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	6.14353770685552	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTATTTCTGGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	117842846	117792602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_117792943_117794258_117794361_117795033_117795259_117797413_117797588_117799883_117799982_117801752_117801826_117802226_117802353_117806023_117806238_117807245_117807305_117809961_117810099_117811642_117811799_117812111_117812276_117842427
transcript_124026.nic	chr7	-	2025	12	ISM	ENSMUSG00000030655.16	ENSMUST00000208209.2	2287	13	-81	1659	-34	1156	5prime_fragment	FALSE	canonical	3	33	junction_4	6.09023062707063	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGTAAGTAACACATTGAT	NA	False	NA	NA	False	AAGAAA	-3	NA	117842927	117794261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_117794361_117795033_117795259_117797413_117797588_117799883_117799982_117801752_117801826_117802226_117802353_117806023_117806238_117807245_117807305_117809961_117810099_117811642_117811799_117812111_117812276_117842427
transcript_124028.known	chr7	-	2957	8	FSM	ENSMUSG00000058420.9	ENSMUST00000203796.4	2957	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.55550625999976	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTCATTGGAGTTATCTA	NA	False	NA	-7	True	AATAAA	-17	NA	118047442	117979942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_117981276_118007247_118007404_118009146_118009268_118033055_118033676_118036045_118036195_118041570_118041720_118042341_118042365_118047036
transcript_124030.known	chr7	-	914	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	921	junction_3	42.5234053198941	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTGGTTTTCTTGTGCT	6625	False	NA	-2	True	AATAAA	-16	NA	118132579	118124284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
transcript_124033.known	chr7	-	4546	16	FSM	ENSMUSG00000042246.6	ENSMUST00000044195.6	4546	16	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_8	12.8571640211466	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTTGGGTGCGTGTTG	4144	False	NA	-2	True	AATAAA	-18	NA	118183959	118135063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_118137441_118138637_118138717_118141108_118141265_118142521_118142653_118144824_118145012_118146539_118146638_118146826_118146945_118149157_118149316_118150358_118150533_118151920_118152069_118155045_118155192_118158078_118158162_118160213_118160382_118163439_118163589_118165407_118165649_118183826
transcript_124041.known	chr7	-	2298	11	FSM	ENSMUSG00000042246.6	ENSMUST00000153635.2	2298	11	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_3	13.8235306633291	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAAAGAAATTTGAGGG	4194	False	NA	NA	False	NA	NA	NA	118183909	118145807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_118146638_118146826_118146945_118149157_118149316_118150358_118150533_118151920_118152069_118155045_118155192_118158078_118158162_118160213_118160382_118163439_118163589_118165407_118165649_118183826
transcript_124046.known	chr7	+	510	2	FSM	ENSMUSG00000109284.2	ENSMUST00000208859.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGACCCCCAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	118191550	118196024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_118191684_118195647
transcript_124048.known	chr7	-	737	6	FSM	ENSMUSG00000033917.16	ENSMUST00000132509.4	737	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	195.270683923624	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTTGGACTGTCAATAC	NA	False	NA	NA	False	NA	NA	NA	118304603	118288333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304493
transcript_124049.known	chr7	-	1582	6	FSM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	0	0	0	0	multi-exon	TRUE	canonical	3	428	junction_5	40.804901666344	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTACTGATCTTCTGGT	NA	False	NA	3	True	AATAAA	-28	NA	118305001	118287767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304612
transcript_124057.known	chr7	+	5073	16	FSM	ENSMUSG00000033904.17	ENSMUST00000106557.8	5073	16	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_14	14.3789970288458	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTGGATCTCTTTTAG	NA	False	NA	10	True	AATAAA	-20	NA	118311774	118336247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118332109_118332196_118334490
transcript_124058.nic	chr7	+	4996	15	NIC	ENSMUSG00000033904.17	novel	5073	16	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	3	41	junction_14	17.3487634094403	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATCTTGTTGGATCTCT	NA	False	NA	5	True	AATAAA	-15	NA	118311760	118336242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118334490
transcript_124060.nic	chr7	+	2738	9	ISM	ENSMUSG00000033904.17	ENSMUST00000106557.8	5073	16	-14	10498	-14	-5936	5prime_fragment	FALSE	canonical	3	81	junction_5	8.5110222652746	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATAAAATAACTGCCGT	NA	False	NA	NA	False	AATACA	-8	NA	118311760	118325749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722
transcript_124063.nic	chr7	+	2161	5	ISM	ENSMUSG00000033904.17	ENSMUST00000106557.8	5073	16	-14	14108	-14	-9546	5prime_fragment	TRUE	canonical	3	88	junction_3	7.03562363973514	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCCTTATATTATAACAG	NA	False	NA	NA	False	AAAAAG	-5	NA	118311760	118322139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616
transcript_124071.known	chr7	+	5097	31	FSM	ENSMUSG00000030982.20	ENSMUST00000059390.13	5097	31	0	0	0	0	multi-exon	TRUE	canonical	3	302	junction_1	75.0223744403406	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCACTGTGATGCTAATT	9989	False	NA	NA	False	ACTAAA	-15	NA	118339448	118442189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
transcript_12409.known	chr10	-	2501	7	FSM	ENSMUSG00000020232.18	ENSMUST00000132313.2	2501	7	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	31.1202863454407	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186203	81181884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719
transcript_124106.known	chr7	+	1102	9	FSM	ENSMUSG00000030982.20	ENSMUST00000175922.8	1102	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	239.086804320105	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTGCAAAATTTAATTGAA	NA	False	NA	NA	False	NA	NA	NA	118339969	118361369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_118339999_118342832_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118360988
transcript_124107.known	chr7	+	1503	9	FSM	ENSMUSG00000073856.12	ENSMUST00000098087.9	1503	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.992156741649222	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTAAAGTCTGTGATATT	NA	False	NA	NA	False	AATAAA	-24	NA	118454997	118571343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_118455185_118472043_118472118_118475464_118475595_118476822_118476921_118498852_118498906_118499031_118499110_118514733_118514819_118540807_118540920_118570657
transcript_124109.known	chr7	+	2891	1	FSM	ENSMUSG00000073856.12	ENSMUST00000208658.2	2891	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTAGTGGTTTGTGATGTT	NA	False	NA	NA	False	NA	NA	NA	118454974	118457865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_118455000_118457900
transcript_12411.known	chr10	-	1956	14	FSM	ENSMUSG00000020235.17	ENSMUST00000020457.14	1956	14	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	197.594708023907	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTTTGTCTGTGTGTGCG	NA	False	NA	NA	False	NA	NA	NA	81214285	81202931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81203385_81203474_81203568_81203964_81204070_81204356_81204431_81204907_81205093_81205171_81205275_81205804_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
transcript_124113.nnic	chr7	-	5029	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	-4	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTTTGAATGTGTG	NA	False	NA	-12	True	AATAAA	-21	NA	118454911	118441439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
transcript_124115.known	chr7	-	4884	5	FSM	ENSMUSG00000030980.18	ENSMUST00000063607.12	4884	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	184.092877374438	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCATGCCTAAAGCACAAA	NA	False	NA	-32	True	AATAAA	-1	NA	118455224	118441459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118452111_118452564_118454845
transcript_124116.known	chr7	-	5382	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	263.543639650059	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATATAGTCTTTTGAAT	NA	False	NA	-17	True	AATAAA	-16	NA	118455221	118441444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
transcript_124123.known	chr7	-	3253	4	FSM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	268.622411574314	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTATTATTGTTGTTG	NA	False	NA	-10	True	ATTAAA	-17	NA	118455215	118443012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_118445318_118447671_118447798_118452111_118452564_118454845
transcript_124127.nic	chr7	-	309	2	ISM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	302	9310	-6	-337	5prime_fragment	FALSE	canonical	3	591	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGTAGCACTCACTTGG	NA	False	NA	NA	False	AAGAAA	-6	NA	118454913	118452322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_118452564_118454845
transcript_12413.known	chr10	-	3057	14	FSM	ENSMUSG00000020235.17	ENSMUST00000140901.8	3057	14	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_9	52.0083061185946	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTGGTTGTTGCTGTTTA	NA	False	NA	NA	False	NA	NA	NA	81214350	81202055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81203385_81203474_81203568_81203964_81204070_81204356_81204591_81204907_81205093_81205171_81205275_81205804_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
transcript_124131.known	chr7	-	4518	4	FSM	ENSMUSG00000008734.10	ENSMUST00000008878.10	4518	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	4.64279609239471	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGATGCGTGGTAGCTT	NA	False	NA	-3	True	AATAAA	-15	NA	118594434	118571269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_118574427_118575735_118575894_118582837_118583869_118594262
transcript_124138.known	chr7	-	2689	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCATTCTTTTTTATT	NA	False	NA	-1	True	AATAAA	-20	NA	119320021	119314315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
transcript_124142.known	chr7	-	744	2	FSM	ENSMUSG00000030942.9	ENSMUST00000209175.2	744	2	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAGTAACTCAAGGCAGA	NA	False	NA	NA	False	NA	NA	NA	119319987	119318034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_119318525_119319733
transcript_124147.nnic	chr7	+	2192	2	NNC	ENSMUSG00000100153.3	novel	1437	2	NA	NA	-25	18	intron_retention	FALSE	canonical	3	208	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	119339123	119341467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_119339946_119340097
transcript_124148.known	chr7	+	1437	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_1	0	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACG	NA	False	NA	NA	False	NA	NA	NA	119339148	119341449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_119340294_119341157
transcript_124149.nnic	chr7	+	2234	2	NNC	ENSMUSG00000100153.3	novel	1437	2	NA	NA	-20	18	intron_retention	FALSE	canonical	3	37	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	119339128	119341467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_119339769_119339873
transcript_124170.known	chr7	-	1241	10	FSM	ENSMUSG00000030929.18	ENSMUST00000063902.14	1241	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	31.084115271666	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAAATAATTCATT	NA	False	NA	NA	False	NA	NA	NA	119393190	119371160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_119371568_119371767_119371843_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
transcript_124174.known	chr7	-	3564	9	FSM	ENSMUSG00000030929.18	ENSMUST00000150844.3	3564	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	8.7571399440685	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGATTTGTGTGTTTGA	NA	False	NA	-4	True	AATAAA	-32	NA	119393281	119383053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
transcript_124180.nic	chr7	-	775	3	NIC	ENSMUSG00000030929.18	novel	6025	7	NA	NA	1	-4258	intron_retention	FALSE	canonical	3	81	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCACTGGGATCCTGAAAA	NA	False	NA	NA	False	AATAAA	-2	NA	119393204	119389974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_119390452_119391487_119391722_119393140
transcript_124182.known	chr7	+	752	5	FSM	ENSMUSG00000030922.13	ENSMUST00000054440.11	752	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	26.343879744639	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAACTATGACATTGTCC	NA	False	NA	NA	False	NA	NA	NA	119495104	119515656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_119495114_119499333_119499532_119509026_119509186_119513395_119513489_119515363
transcript_124183.known	chr7	+	875	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106518.9	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	16.3095064303001	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACAGCTTTAGATTGATC	NA	False	NA	-11	True	NA	NA	NA	119495083	119515956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_119495114_119509026_119509186_119513395_119513489_119515363
transcript_124184.known	chr7	+	936	4	FSM	ENSMUSG00000030922.13	ENSMUST00000208202.2	936	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	24.5356882927706	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTATAGGCTTTTTTG	NA	False	NA	-74	True	NA	NA	NA	119495092	119515893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_119495114_119508893_119509186_119513395_119513489_119515363
transcript_124191.known	chr7	-	630	3	FSM	ENSMUSG00000048787.14	ENSMUST00000142120.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	52.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCTAGCCTCTTAACAGA	NA	False	NA	NA	False	NA	NA	NA	119461055	119457215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_119457280_119458602_119459139_119461025
transcript_124192.known	chr7	-	3072	3	FSM	ENSMUSG00000048787.14	ENSMUST00000098080.9	3072	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	56	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATATTTATACTCTT	NA	False	NA	-14	True	AATAAA	-9	NA	119494766	119455035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_119457280_119458602_119459139_119494474
transcript_124193.known	chr7	-	5985	3	FSM	ENSMUSG00000048787.14	ENSMUST00000059851.14	5985	3	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_2	16	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGATATCTCATAGTTAG	NA	False	NA	NA	False	AATAAA	-42	NA	119494968	119452018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_119457280_119458602_119459139_119494780
transcript_124194.nnic	chr7	-	2902	3	NNC	ENSMUSG00000048787.14	novel	5985	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	47.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATACTCTTGATACAA	NA	False	NA	-7	True	AATAAA	-16	NA	119494968	119455028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_119457280_119458602_119459139_119494853
transcript_124199.known	chr7	+	1069	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106516.2	1069	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	24.9977776790036	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTTTGTTGATTTT	NA	False	NA	12	True	TATAAA	-23	NA	119499330	119515979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_119499532_119509026_119509186_119513395_119513489_119515363
transcript_1242.nnic	chr1	+	1563	6	NIC	ENSMUSG00000003135.16	novel	3162	7	NA	NA	-57	-19	intron_retention	FALSE	canonical	3	64	junction_1	290.336769975833	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAATTTCCTTTTTCCTA	NA	False	NA	8	True	TATAAA	-19	NA	39574825	39584463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_39575419_39577351_39577505_39578953_39579157_39581480_39581684_39583972_39584070_39584149
transcript_124200.known	chr7	+	1484	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTTTTCTTTTTCTT	NA	False	NA	5	True	ATTAAA	-14	NA	119701575	119720209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
transcript_124202.known	chr7	-	1383	8	FSM	ENSMUSG00000030905.6	ENSMUST00000033198.6	1383	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.55550625999976	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTTTGACAACTTTCTA	NA	False	NA	1	True	AATAAA	-21	NA	119801334	119785602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_119785922_119788948_119789034_119789674_119789797_119794547_119794732_119796872_119796975_119798470_119798534_119800299_119800451_119800977
transcript_124206.known	chr7	+	851	1	FSM	ENSMUSG00000044141.9	ENSMUST00000123576.2	851	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCAGTGTTTTCATTCTC	NA	False	NA	NA	False	AATAAA	-21	NA	120196847	120197698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_120196800_120197700
transcript_124207.known	chr7	+	1896	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACATCCTCTCAGCTGGT	NA	False	NA	22	True	AGTAAA	-14	NA	120234398	120258747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
transcript_124214.known	chr7	-	1812	2	FSM	ENSMUSG00000097343.3	ENSMUST00000180977.3	1812	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAACCACGTTGGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	120276793	120272957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_120274500_120276523
transcript_124220.known	chr7	+	813	2	FSM	ENSMUSG00000046096.8	ENSMUST00000208454.2	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGAAGGCAGTCATTTGC	NA	False	NA	21	True	AATAAA	-27	NA	120276842	120325904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_120277094_120325342
transcript_124222.nic	chr7	+	3200	19	NIC	ENSMUSG00000035064.18	novel	3047	18	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	28.2703002556253	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGGCCTTTATACATGC	NA	False	NA	9	True	AATATA	-16	NA	120442763	120503224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_120443009_120443918_120444013_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
transcript_124223.known	chr7	+	6580	18	FSM	ENSMUSG00000035064.18	ENSMUST00000047875.16	6580	18	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.32971086202773	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTTGATTTGTCCCG	NA	False	NA	NA	False	NA	NA	NA	120442053	120506673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_120442324_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
transcript_124228.known	chr7	+	3047	18	FSM	ENSMUSG00000035064.18	ENSMUST00000106489.9	3047	18	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	20.5168510369059	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGGCCTTTATACATGC	NA	False	NA	9	True	AATATA	-16	NA	120442822	120503224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_120443009_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
transcript_124241.known	chr7	+	3001	22	FSM	ENSMUSG00000030880.15	ENSMUST00000106483.4	3001	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	76.9953616413724	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTCATAGTGCTGCTG	NA	False	NA	NA	False	AATAAA	-14	NA	120516993	120545472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_120517011_120517033_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698
transcript_124243.nnic	chr7	+	3468	22	NNC	ENSMUSG00000030880.15	novel	4194	21	NA	NA	-18	-1	intron_retention	TRUE	canonical	0	0	junction_21	76.9953616413724	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTCTTCAGAATGTGGT	NA	False	NA	NA	False	NA	NA	NA	120516948	120546654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698_120545544_120546326
transcript_124249.known	chr7	+	4194	21	FSM	ENSMUSG00000030880.15	ENSMUST00000033173.15	4194	21	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_16	33.3787357459805	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCTTCAGAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	120517006	120546655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698
transcript_124268.known	chr7	-	2525	5	FSM	ENSMUSG00000030878.12	ENSMUST00000033169.9	2525	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	6.89202437604511	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTACGTCTGTTGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	120581535	120556258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_120558021_120559314_120559480_120559732_120559882_120569548_120569662_120581199
transcript_124269.known	chr7	-	3468	1	FSM	ENSMUSG00000030878.12	ENSMUST00000207722.2	3468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	CATAAA	-17	NA	120581508	120578040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_120578000_120581500
transcript_124271.known	chr7	+	1823	5	FSM	ENSMUSG00000030876.8	ENSMUST00000033163.8	1823	5	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	46.4435140789325	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCACCATGTTCTTCT	9427	False	NA	7	True	AATAAA	-16	NA	120633667	120676058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_120634199_120647060_120647252_120651309_120651520_120656437_120656623_120675352
transcript_124273.nnic	chr7	+	1639	5	NNC	ENSMUSG00000030876.8	novel	1823	5	NA	NA	114	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	114.917361612595	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCACCATGTTCTTCT	9541	False	NA	7	True	AATAAA	-16	NA	120633781	120676058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_120634129_120647060_120647252_120651309_120651520_120656437_120656623_120675352
transcript_124277.known	chr7	-	2902	17	FSM	ENSMUSG00000034951.11	ENSMUST00000057576.8	2902	17	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_8	14.1585607937389	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGGTGTTTCCTTCTTCT	8924	False	NA	0	True	AATAAA	-17	NA	121580934	121522061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
transcript_124279.known	chr7	-	4251	18	FSM	ENSMUSG00000030872.15	ENSMUST00000124566.2	4251	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	199.736521950023	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGTGTCACTGTTTTG	NA	False	NA	-5	True	AATAAA	-14	NA	121620390	121585944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121586888_121587496_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297_121601436_121601889_121601971_121603109_121603211_121606479_121606604_121607553_121607653_121609905_121609982_121611371_121611457_121620211
transcript_124286.known	chr7	-	4915	17	FSM	ENSMUSG00000030872.15	ENSMUST00000033160.15	4915	17	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_16	35.03391214238	1558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGTGTCACTGTTTTG	NA	False	NA	-5	True	AATAAA	-14	NA	121620445	121585944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297_121601436_121601889_121601971_121603109_121603211_121606479_121606604_121607553_121607653_121609905_121609982_121611371_121611457_121620211
transcript_124301.known	chr7	-	3086	5	FSM	ENSMUSG00000030872.15	ENSMUST00000145277.8	3086	5	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_4	55.1565952538769	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAATTTATGTGCAT	NA	False	NA	NA	False	NA	NA	NA	121620403	121603969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121606604_121607553_121607653_121609905_121609982_121611371_121611457_121620211
transcript_124308.known	chr7	-	2046	9	FSM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	13.5317912709294	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTGTTTTGCCTCCAT	NA	False	NA	-1	True	TTTAAA	-18	NA	121666486	121638043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121645956_121647324_121647798_121654781_121654972_121662151_121662308_121666127
transcript_124318.known	chr7	-	3222	8	FSM	ENSMUSG00000030871.12	ENSMUST00000147397.2	3222	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	8.41281820819169	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTGTTTTGCCTCCAT	NA	False	NA	-1	True	TTTAAA	-18	NA	121666293	121638043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121647798_121654781_121654972_121662151_121662308_121666127
transcript_124320.known	chr7	+	4849	7	FSM	ENSMUSG00000030870.13	ENSMUST00000033158.6	4849	7	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_1	33.5642005052341	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTCTCTTTCCTTCC	NA	False	NA	9	True	ATTAAA	-14	NA	121666397	121681417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_121666708_121666886_121667217_121668003_121668213_121670924_121670991_121671132_121671239_121675330_121675414_121677672
transcript_124324.nic	chr7	+	2590	6	ISM	ENSMUSG00000030870.13	ENSMUST00000033158.6	4849	7	-44	4562	-44	0	5prime_fragment	FALSE	canonical	3	624	junction_1	34.3685903115039	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATGTTGTCCCCATTGT	NA	False	NA	NA	False	NA	NA	NA	121666353	121676855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_121666708_121666886_121667217_121668003_121668213_121670924_121670991_121671132_121671239_121675330
transcript_124330.known	chr7	+	3001	3	FSM	ENSMUSG00000030870.13	ENSMUST00000133390.2	3001	3	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_1	49	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	121666662	121670629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_121666708_121666886_121667217_121668003
transcript_124332.known	chr7	-	3479	5	FSM	ENSMUSG00000030869.12	ENSMUST00000033157.10	3479	5	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	2248.42489311963	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTCCTAACATGCATCA	6358	False	NA	NA	False	AATAAA	-37	NA	121701109	121684625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121687562_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_124337.known	chr7	-	552	5	FSM	ENSMUSG00000030869.12	ENSMUST00000106471.9	552	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	2300.90270328843	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTTCTCAATTAGTTT	6508	False	NA	-11	True	AATAAA	-16	NA	121700959	121690053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121690213_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_124339.known	chr7	-	1416	5	FSM	ENSMUSG00000030869.12	ENSMUST00000123296.8	1416	5	0	0	0	0	multi-exon	FALSE	canonical	3	4604	junction_1	400.950978923858	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTTTGAGAGCATCTT	6393	False	NA	NA	False	AATAAA	-13	NA	121701074	121689278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_124341.nnic	chr7	-	790	5	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	-13	-1	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_1	2197.68361007676	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTATTTTTCTCAATTAG	6345	False	NA	-14	True	AATAAA	-13	NA	121701122	121690056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_121690291_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_124347.known	chr7	-	3750	13	FSM	ENSMUSG00000044702.14	ENSMUST00000098068.10	3750	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_9	28.0835806121655	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732169	121706484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
transcript_124348.known	chr7	-	2559	13	FSM	ENSMUSG00000044702.14	ENSMUST00000106469.8	2559	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	41.4242950721219	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732067	121706484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121727360_121727667_121728145_121728240_121728896_121728957_121731942
transcript_124353.nnic	chr7	-	1998	12	NIC	ENSMUSG00000044702.14	novel	2559	13	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_8	40.7258522479556	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTGCTTGGCTTGTTCT	NA	False	NA	-5	True	AATAAA	-15	NA	121732182	121706489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121727360_121727667_121728145_121728240_121728896_121728957_121731942
transcript_124358.known	chr7	-	3304	12	FSM	ENSMUSG00000044702.14	ENSMUST00000106468.7	3304	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	44.3423943183529	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATTGCTTGTCGAATTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	121732140	121710794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121710994_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
transcript_124360.nnic	chr7	-	1692	11	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_8	41.0980534818865	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTGCTTGGCTTGTTCT	NA	False	NA	-5	True	AATAAA	-15	NA	121732182	121706489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728145_121728240_121728896_121728957_121731942
transcript_124362.known	chr7	-	3181	11	FSM	ENSMUSG00000044702.14	ENSMUST00000142952.8	3181	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	58.7323590535916	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATTGCTTGTCGAATTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	121732111	121710794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121710994_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728896_121728957_121731942
transcript_124363.known	chr7	-	1553	10	FSM	ENSMUSG00000044702.14	ENSMUST00000063587.13	1553	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	51.0709987525234	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732132	121706484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728896_121728957_121731942
transcript_124367.known	chr7	-	3216	4	FSM	ENSMUSG00000044702.14	ENSMUST00000130149.3	3216	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	6.34209919681348	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGCTGCTTCTGGTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	121732142	121724804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121727667_121728145_121728240_121728896_121728957_121731942
transcript_124368.known	chr7	-	2145	1	FSM	ENSMUSG00000044702.14	ENSMUST00000205352.2	2145	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	121732208	121730063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_121730100_121732200
transcript_124370.known	chr7	+	1532	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	14	True	AATAAA	-15	NA	121732263	121748267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
transcript_124372.nnic	chr7	+	1434	5	NIC	ENSMUSG00000030868.7	novel	1532	6	NA	NA	-7	-2	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	141.324758977329	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGTTTAGGCTCATTCA	NA	False	NA	12	True	AATAAA	-13	NA	121732256	121748265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121747279
transcript_124376.known	chr7	+	2506	5	FSM	ENSMUSG00000030868.7	ENSMUST00000123602.2	2506	5	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_4	38.4740172064213	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	14	True	AATAAA	-15	NA	121732276	121748267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
transcript_124379.known	chr7	+	2199	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	0	0	0	0	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1783	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTTCTCTTTTTG	NA	False	NA	56	True	ATTAAA	-14	NA	121758661	121769096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
transcript_124380.known	chr7	+	2911	17	FSM	ENSMUSG00000052889.12	ENSMUST00000064989.12	2911	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	2.23257138743647	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAGAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	121888519	122227878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_121888741_121889735_121889768_122024181_122024265_122056437_122056550_122057266_122057396_122116051_122116209_122117267_122117403_122127698_122127796_122143855_122144003_122167356_122167531_122181652_122181745_122183620_122183684_122189267_122189407_122193825_122193907_122194188_122194297_122199912_122200054_122226878
transcript_124387.known	chr7	+	5728	17	FSM	ENSMUSG00000030779.17	ENSMUST00000071590.6	5728	17	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_15	18.1597726789186	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTGCAAATGTATATTA	7920	False	NA	15	True	AATAAA	-21	NA	122570140	122601780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_122570351_122575158_122575259_122577798_122577836_122582185_122582231_122584215_122584305_122584423_122584524_122584882_122585023_122587824_122587998_122589052_122589157_122589267_122589606_122591191_122591289_122591446_122591526_122591622_122591678_122593892_122593962_122596165_122596529_122597747_122599503_122599806
transcript_124393.nic	chr7	+	4624	16	ISM	ENSMUSG00000030779.17	ENSMUST00000071590.6	5728	17	-1024	2432	-670	-1810	5prime_fragment	TRUE	canonical	3	56	junction_15	15.7499911816554	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGGAAATGCAGAAAATGCA	6896	False	NA	NA	False	NA	NA	NA	122569116	122599348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_122570351_122575158_122575259_122577798_122577836_122582185_122582231_122584215_122584305_122584423_122584524_122584882_122585023_122587824_122587998_122589052_122589157_122589267_122589606_122591191_122591289_122591446_122591526_122591622_122591678_122593892_122593962_122596165_122596529_122597747
transcript_124395.known	chr7	+	6345	3	FSM	ENSMUSG00000030779.17	ENSMUST00000098062.9	6345	3	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTGTTTTGTGGATGA	7702	False	NA	NA	False	AATAAA	-13	NA	122569922	122583615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_122570351_122575158_122575259_122577798
transcript_124398.known	chr7	+	662	3	FSM	ENSMUSG00000109814.2	ENSMUST00000211504.2	662	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAACAAAAA	1736	False	NA	NA	False	NA	NA	NA	122630637	122665662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_122630774_122660895_122661022_122665262
transcript_124410.nic	chr7	+	568	3	ISM	ENSMUSG00000052707.9	ENSMUST00000206888.2	3625	9	-391	33891	-20	-18862	5prime_fragment	FALSE	canonical	3	106	junction_2	15.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACGACAAGAAAAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	122723087	122743024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_122723556_122723890_122723939_122742972
transcript_124422.known	chr7	+	2396	17	FSM	ENSMUSG00000030769.16	ENSMUST00000033035.13	2396	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	8.7213817712562	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCAGAGGTGCTGCTGAC	NA	False	NA	15	True	AATAAA	-22	NA	122814035	122872476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_122814221_122832210_122832328_122834820_122834978_122837346_122837419_122838591_122838697_122839961_122840022_122847160_122847266_122849293_122849400_122851635_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971_122867141_122868245_122868462_122869063_122869233_122872223
transcript_124426.nic	chr7	-	3555	21	NIC	ENSMUSG00000030766.16	novel	3311	20	NA	NA	-150	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	48.4230317101274	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAAACTTGCTAATTC	NA	False	NA	-10	True	ATTAAA	-16	NA	122969288	122878502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
transcript_124429.known	chr7	-	3336	20	FSM	ENSMUSG00000030766.16	ENSMUST00000106442.9	3336	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	53.0955862029814	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	-1	True	ATTAAA	-25	NA	122969109	122878493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_122879340_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
transcript_124432.known	chr7	-	3036	20	FSM	ENSMUSG00000030766.16	ENSMUST00000205262.2	3036	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	60.4560690757234	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAACAAAACA	NA	False	NA	NA	False	AATATA	-10	NA	122969108	122878607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
transcript_124433.nic	chr7	-	3351	19	NIC	ENSMUSG00000030766.16	novel	3336	20	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	53.6950982888281	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	-1	True	ATTAAA	-25	NA	122969164	122878493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_122879340_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122968976
transcript_124434.known	chr7	-	3102	19	FSM	ENSMUSG00000030766.16	ENSMUST00000098060.5	3102	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	64.8370226504336	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	-1	True	ATTAAA	-25	NA	122969109	122878493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_122879340_122885720_122886237_122891258_122891429_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
transcript_124439.known	chr7	-	3658	15	FSM	ENSMUSG00000030766.16	ENSMUST00000206294.2	3658	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	55.1393873815835	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	122969138	122894501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
transcript_124441.known	chr7	+	1286	11	FSM	ENSMUSG00000030763.8	ENSMUST00000206574.2	1286	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	37.2322440903043	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGCTACATCTGTACA	6898	False	NA	22	True	AATAAA	-22	NA	122977278	123029572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003712_123009950_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
transcript_124455.known	chr7	-	1100	1	FSM	ENSMUSG00000030766.16	ENSMUST00000205805.2	1100	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAGAAAAATAGAAGGG	NA	False	NA	NA	False	NA	NA	NA	122969099	122967999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_122968000_122969100
transcript_124456.known	chr7	-	3372	21	FSM	ENSMUSG00000030766.16	ENSMUST00000167309.8	3372	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	68.2154491299442	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTGCTAATTCTTAGA	NA	False	NA	-5	True	ATTAAA	-21	NA	122969101	122878497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_122879340_122884642_122884691_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
transcript_124457.known	chr7	+	1487	6	FSM	ENSMUSG00000030762.12	ENSMUST00000033023.10	1487	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	2.57681974534503	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCTGTTGACTTGTCTT	4376	False	NA	7	True	AATAAA	-21	NA	123061513	123067227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_123061682_123061796_123062042_123063411_123063539_123064331_123064547_123065808_123065944_123066630
transcript_124458.known	chr7	-	7831	7	FSM	ENSMUSG00000030757.14	ENSMUST00000042470.14	7831	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	4.54606056566195	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGGATGTCTTTATTG	NA	False	NA	NA	False	AATAAA	-24	NA	123099672	123074606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_123079996_123084162_123084655_123088801_123089486_123094028_123094156_123094515_123094587_123097808_123097996_123098791
transcript_124465.known	chr7	+	2389	8	FSM	ENSMUSG00000030752.9	ENSMUST00000033010.9	2389	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	4.74664220738176	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAGAAACATTTCTTTA	NA	False	NA	NA	False	AATAAA	-27	NA	125043847	125061441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_125043965_125051399_125051901_125054262_125054430_125055604_125055738_125056135_125056181_125059046_125059197_125060086_125060180_125060258
transcript_124468.known	chr7	-	1120	8	FSM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_7	177.832872698624	491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090768	125066811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
transcript_124472.known	chr7	+	3696	12	FSM	ENSMUSG00000030748.10	ENSMUST00000206846.2	3696	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.48136637958772	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTCCTTTACTATACAC	NA	False	NA	NA	False	AATAAA	-15	NA	125151458	125177139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_125151501_125163723_125163900_125164808_125164897_125166327_125166470_125168194_125168347_125169113_125169266_125170605_125170763_125171105_125171220_125172022_125172123_125173809_125173889_125174311_125174362_125174695
transcript_124473.known	chr7	+	5256	11	FSM	ENSMUSG00000030748.10	ENSMUST00000033004.8	5256	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	3.9	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTCTCAGAGAGACAATT	NA	False	NA	NA	False	ATTAAA	-17	NA	125151291	125178646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_125151501_125163723_125163900_125164808_125164897_125166327_125166470_125168194_125168347_125169113_125169266_125170605_125170763_125172022_125172123_125173809_125173889_125174311_125174362_125174695
transcript_124474.nic	chr7	+	3654	11	NIC	ENSMUSG00000030748.10	novel	3696	12	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	3.9	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTCCTTTACTATACAC	NA	False	NA	NA	False	AATAAA	-15	NA	125151395	125177139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_125151501_125163723_125163909_125164808_125164897_125166327_125166470_125168194_125168347_125169113_125169266_125170605_125170763_125172022_125172123_125173809_125173889_125174311_125174362_125174695
transcript_124476.known	chr7	-	6961	37	FSM	ENSMUSG00000032777.10	ENSMUST00000055506.9	6961	37	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_34	23.9112782676933	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGTGTATTGGCCTAATG	NA	False	NA	1	True	ATTAAA	-16	NA	125306952	125240125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125240906_125241618_125241812_125242497_125242538_125243045_125243545_125244686_125244977_125245645_125245906_125246511_125246800_125247568_125247742_125250234_125250329_125251034_125251098_125253638_125253752_125255015_125255098_125256657_125256801_125258228_125258387_125261430_125261620_125261748_125261828_125262130_125262267_125262579_125262719_125266195_125266374_125266483_125266581_125267165_125267264_125268025_125268172_125268320_125268591_125268754_125268940_125269646_125269751_125271856_125272011_125273228_125273366_125275654_125275858_125276472_125276789_125277997_125278114_125280273_125280436_125292310_125292435_125295632_125295730_125298120_125298265_125298515_125298693_125303002_125303213_125306628
transcript_124477.known	chr7	-	4066	23	FSM	ENSMUSG00000032777.10	ENSMUST00000205697.2	4066	23	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_20	17.5878550320413	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTTGTTTTGTCTGC	NA	False	NA	NA	False	AATGAA	-18	NA	125306932	125261129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125261620_125261748_125261828_125262130_125262267_125262579_125262719_125266195_125266374_125266483_125266581_125267165_125267264_125268025_125268172_125268320_125268591_125268754_125268940_125269646_125269751_125271856_125272011_125273228_125273366_125275654_125275858_125276472_125276789_125277997_125278114_125280273_125280436_125292310_125292435_125295632_125295730_125298120_125298265_125298515_125298693_125303002_125303213_125306628
transcript_124493.known	chr7	-	4552	24	FSM	ENSMUSG00000000131.16	ENSMUST00000168189.8	4552	24	0	0	0	0	multi-exon	TRUE	canonical	3	436	junction_21	38.8223134638356	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGATGGGGCATCTTTGT	NA	False	NA	NA	False	AATAAA	-28	NA	125799673	125700886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728813_125730197_125730307_125739736_125739847_125748405_125748533_125751997_125752452_125755895_125755974_125760032_125760193_125768300_125768499_125770201_125770315_125773329_125773421_125799070
transcript_124503.known	chr7	-	4455	24	FSM	ENSMUSG00000000131.16	ENSMUST00000009344.16	4455	24	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_14	102.701045398272	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGATGGGGCATCTTTG	NA	False	NA	NA	False	AATAAA	-27	NA	125799580	125700887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728810_125730197_125730307_125739736_125739847_125748405_125748533_125751997_125752452_125755895_125755974_125760032_125760193_125768300_125768499_125770201_125770315_125773329_125773421_125799070
transcript_124527.known	chr7	+	4109	4	FSM	ENSMUSG00000042978.12	ENSMUST00000056028.11	4109	4	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_2	13.4412301024373	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGAGCTGCAGGGTGG	NA	False	NA	19	True	AATAAA	-16	NA	125871790	125894188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_125872272_125889028_125889262_125890214_125890418_125890996
transcript_124528.known	chr7	-	2053	1	FSM	ENSMUSG00000030742.8	ENSMUST00000205398.2	2053	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAGAAAACAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	125968742	125966689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125966700_125968700
transcript_124529.known	chr7	-	1235	12	FSM	ENSMUSG00000030742.8	ENSMUST00000032997.8	1235	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_9	5.32264769756525	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	125968706	125962998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
transcript_124530.known	chr7	-	1215	11	FSM	ENSMUSG00000030742.8	ENSMUST00000206793.2	1215	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	13.9071923837991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTTGTCTTCTTTTTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	125968713	125962995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
transcript_124534.known	chr7	-	2152	13	FSM	ENSMUSG00000030741.16	ENSMUST00000138141.8	2152	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	168.693735476125	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	-6	True	AATAAA	-14	NA	125976583	125969238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973146_125973372_125973452_125974238_125974376_125975845_125975912_125976008
transcript_124537.nic	chr7	-	2175	13	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_12	122.006830409886	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	-6	True	AATAAA	-14	NA	125976657	125969238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008_125976218_125976289
transcript_124544.known	chr7	-	2219	12	FSM	ENSMUSG00000030741.16	ENSMUST00000032994.15	2219	12	0	0	0	0	multi-exon	TRUE	canonical	3	348	junction_9	48.6508899292612	1139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTTGTCTCTCTGT	NA	False	NA	1	True	AATAAA	-21	NA	125976622	125969231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
transcript_12456.known	chr10	-	2780	11	FSM	ENSMUSG00000020235.17	ENSMUST00000138343.2	2780	11	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_6	55.7831515782319	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTGTGGAGCCAGTGTC	NA	False	NA	-10	True	ATTAAA	-11	NA	81214297	81203205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81203385_81203474_81203568_81203964_81204070_81204356_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
transcript_124576.known	chr7	-	3251	10	FSM	ENSMUSG00000030741.16	ENSMUST00000126810.8	3251	10	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_6	44.3045019031801	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	-6	True	AATAAA	-14	NA	125976583	125969238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125974376_125975845_125975912_125976008
transcript_124614.known	chr7	-	3388	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGGTTTCTGTCTTT	NA	False	NA	-6	True	AATAAA	-20	NA	125995909	125982025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
transcript_12462.known	chr10	+	3971	10	FSM	ENSMUSG00000034854.9	ENSMUST00000044844.9	3971	10	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_9	22.6077666104176	364	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTCAACCCTTTACAG	822	False	NA	30	True	AATAAA	-21	NA	81193324	81202059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81193721_81195915_81196127_81196932_81197072_81197147_81197334_81197858_81197952_81198038_81198132_81198521_81198693_81198766_81198862_81199386_81199518_81199603
transcript_124622.nic	chr7	-	3531	7	NIC	ENSMUSG00000030722.8	novel	3388	8	NA	NA	-53	0	intron_retention	FALSE	canonical	3	215	junction_6	22.8892259953601	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGGTTTCTGTCTTT	NA	False	NA	-6	True	AATAAA	-20	NA	125995962	125982025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989916_125990442_125990567_125995113_125995187_125995527
transcript_124638.nic	chr7	-	619	3	ISM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	-53	8430	-53	-6407	5prime_fragment	FALSE	canonical	3	215	junction_2	26	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGAGTTTCCGTGAGTG	NA	False	NA	19	True	NA	NA	NA	125995962	125990455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_125990567_125995113_125995187_125995527
transcript_124639.nnic	chr7	+	2467	14	NNC	ENSMUSG00000030727.13	novel	2234	13	NA	NA	-901	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	51.0739109399136	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126027029	126045073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_126027224_126028198_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
transcript_124642.known	chr7	+	2234	13	FSM	ENSMUSG00000030727.13	ENSMUST00000106407.9	2234	13	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	15.3541525327841	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126028237	126045073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
transcript_124643.known	chr7	+	2782	12	FSM	ENSMUSG00000030727.13	ENSMUST00000151304.8	2782	12	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	15.3730471446749	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126027930	126045073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126044109_126044468
transcript_124644.known	chr7	+	2279	12	FSM	ENSMUSG00000030727.13	ENSMUST00000106405.2	2279	12	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_3	14.2272001159925	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126028611	126045073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
transcript_124652.known	chr7	-	3393	10	FSM	ENSMUSG00000030733.11	ENSMUST00000032978.8	3393	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	100.767548176147	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGCTGTGGCTGATATT	8204	False	NA	-3	True	AATAAA	-26	NA	126074275	126066167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126066946_126067121_126067222_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126073790
transcript_124653.nic	chr7	-	3061	10	NIC	ENSMUSG00000030733.11	novel	3393	10	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_2	75.3988571154828	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGATGGCTGTGGCTGAT	8156	False	NA	-6	True	AATAAA	-23	NA	126074323	126066170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126066946_126067121_126067222_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074167
transcript_124659.known	chr7	-	3366	10	FSM	ENSMUSG00000030733.11	ENSMUST00000205340.2	3366	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	82.2103595046059	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGGCTGTGGCTGATAT	8177	False	NA	-4	True	AATAAA	-25	NA	126074302	126066168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126073790
transcript_124660.nic	chr7	-	3008	10	NIC	ENSMUSG00000030733.11	novel	3089	11	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	197	junction_2	41.0918873973506	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGATGGCTGTGGCTGAT	8156	False	NA	-6	True	AATAAA	-23	NA	126074323	126066170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074167
transcript_124661.nic	chr7	-	3206	10	NIC	ENSMUSG00000030733.11	novel	3366	10	NA	NA	-114	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	86.4935593120617	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGATGGCTGTGGCTGAT	7769	False	NA	-6	True	AATAAA	-23	NA	126074710	126066170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074356
transcript_124668.known	chr7	-	2854	9	FSM	ENSMUSG00000030733.11	ENSMUST00000205497.2	2854	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	88.9690957580215	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCATCATGATGGCTGTG	8257	False	NA	-12	True	AATAAA	-17	NA	126074222	126066176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126066946_126067591_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244_126072267_126074167
transcript_124675.known	chr7	+	1679	10	FSM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	33.4490583749803	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	0	True	AATAAA	-17	NA	126086532	126089899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
transcript_124677.known	chr7	+	1754	9	FSM	ENSMUSG00000073838.11	ENSMUST00000106392.10	1754	9	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	24.9646625252576	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTCTTGTGTCTTCTGT	NA	False	NA	4	True	AATAAA	-21	NA	126086549	126089903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126089084_126089492
transcript_124698.known	chr7	-	3894	24	FSM	ENSMUSG00000032637.16	ENSMUST00000206577.2	3894	24	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_2	297.839161883737	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGACTTTTACTTTTTA	9496	False	NA	-78	True	NA	NA	NA	126102527	126090957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126091388_126091615_126091781_126091929_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
transcript_124700.nnic	chr7	-	3593	24	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	-4	-9	combination_of_known_splicesites	FALSE	canonical	3	143	junction_23	266.578786716817	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAACTAACTTAACCTG	7238	False	NA	-16	True	NA	NA	NA	126101276	126090895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
transcript_124701.nnic	chr7	-	3669	24	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	-109	-9	combination_of_known_splicesites	FALSE	canonical	3	238	junction_2	256.034939723406	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAACTAACTTAACCTG	6819	False	NA	-16	True	NA	NA	NA	126101695	126090895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
transcript_124708.known	chr7	-	3853	23	FSM	ENSMUSG00000032637.16	ENSMUST00000040202.15	3853	23	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	278.170751413855	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	9414	False	NA	0	True	NA	NA	NA	126102609	126090879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126091388_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
transcript_124734.nic	chr7	-	4252	22	NIC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	0	0	intron_retention	FALSE	canonical	3	143	junction_21	199.099617268271	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAACCTGCCTATGGGT	7024	False	NA	-7	True	NA	NA	NA	126101490	126090886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
transcript_124735.known	chr7	-	2745	22	FSM	ENSMUSG00000032637.16	ENSMUST00000166682.9	2745	22	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_21	274.001324127426	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCTGGGGCTCCCCACCC	7024	False	NA	NA	False	NA	NA	NA	126101490	126092134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101401
transcript_124736.known	chr7	-	4023	22	FSM	ENSMUSG00000032637.16	ENSMUST00000167759.8	4023	22	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_12	243.863600773697	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAACCTGCCTATGGGT	6928	False	NA	-7	True	NA	NA	NA	126101586	126090886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
transcript_124738.nic	chr7	-	4655	22	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	-231	0	intron_retention	FALSE	canonical	3	324	junction_21	166.887513543916	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAACCTGCCTATGGGT	9183	False	NA	-7	True	NA	NA	NA	126102840	126090886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
transcript_124788.known	chr7	-	3383	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	2419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGGAGTTTCTAAAGGT	NA	False	NA	NA	False	NA	NA	NA	126165583	126145626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
transcript_124817.nic	chr7	-	869	8	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	-18	16134	-18	0	5prime_fragment	FALSE	canonical	3	1924	junction_1	265.250824692403	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCCTCAAAGTTCCTTAA	NA	False	NA	22	True	AAAACA	-8	NA	126165601	126161760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
transcript_124820.nic	chr7	-	502	5	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	-18	17275	-18	-726	5prime_fragment	FALSE	canonical	3	1990	junction_4	250.479914364406	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGATGAATAAAAACA	NA	False	NA	-4	True	NA	NA	NA	126165601	126162901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
transcript_124821.nic	chr7	-	467	4	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	-6	17961	-6	-1412	5prime_fragment	FALSE	canonical	3	1990	junction_3	283.983958858399	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGACTCTGAGCATGCAG	NA	False	NA	NA	False	NA	NA	NA	126165589	126163587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_126163778_126163874_126163941_126165250_126165392_126165519
transcript_124822.known	chr7	-	926	7	FSM	ENSMUSG00000030738.12	ENSMUST00000180459.3	926	7	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_1	232.710418522439	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCCTCAAAGTTCCTTAA	NA	False	NA	22	True	AAAACA	-8	NA	126165530	126161760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
transcript_124827.nnic	chr7	-	1878	18	NNC	ENSMUSG00000030720.17	novel	3203	18	NA	NA	-110	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_17	50.8134521599864	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126184068	126171257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345_126183453_126183991
transcript_124828.known	chr7	-	3203	18	FSM	ENSMUSG00000030720.17	ENSMUST00000084589.11	3203	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	51.932615376008	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAAAAGCTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	126184989	126170378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345_126183453_126184466
transcript_124832.known	chr7	-	2487	17	FSM	ENSMUSG00000030720.17	ENSMUST00000116269.9	2487	17	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_16	42.5708508694623	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGATTTCTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	126183452	126170571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345
transcript_124851.known	chr7	+	3685	4	FSM	ENSMUSG00000042759.13	ENSMUST00000039522.8	3685	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGGTAAGGACTGGAGG	NA	False	NA	NA	False	NA	NA	NA	126184113	126188284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126184241_126184547_126186984_126187068_126187335_126187428
transcript_124854.known	chr7	-	1571	14	FSM	ENSMUSG00000030720.17	ENSMUST00000098036.9	1571	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	40.0146422904558	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126182362	126171257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935_126182015_126182171
transcript_124855.known	chr7	-	2386	15	FSM	ENSMUSG00000030720.17	ENSMUST00000032962.11	2386	15	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_11	19.7815880173912	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTGATTTCTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	126182419	126170571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
transcript_124858.known	chr7	-	829	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	0	0	0	0	multi-exon	FALSE	canonical	3	3716	junction_2	16	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGGCGTGTGTTGTGT	NA	False	NA	-8	True	AATAAA	-16	NA	126224848	126222420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126222752_126224061_126224206_126224494
transcript_124859.known	chr7	-	570	3	FSM	ENSMUSG00000030717.10	ENSMUST00000191192.2	570	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	1863	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCAACAATAAATCGTAC	NA	False	NA	-37	True	AATAAA	-18	NA	126224516	126222449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126222752_126224061_126224308_126224494
transcript_124860.known	chr7	-	587	3	FSM	ENSMUSG00000030717.10	ENSMUST00000187609.2	587	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	1865.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTTTCCCACCTAAGT	NA	False	NA	NA	False	NA	NA	NA	126224647	126222613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126222752_126224061_126224358_126224494
transcript_124861.nic	chr7	+	1281	11	NIC	ENSMUSG00000030714.15	novel	1312	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	179.607043291737	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	82	False	NA	33	True	AATAAA	-16	NA	126248451	126271951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_126248650_126260223_126260321_126261737_126261824_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
transcript_124863.known	chr7	+	1312	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTTGTACTTTAGGT	111	False	NA	NA	False	AATACA	-18	NA	126248480	126272097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
transcript_124864.known	chr7	+	777	9	FSM	ENSMUSG00000030714.15	ENSMUST00000205507.2	777	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	157.189724139334	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGAGCAGCTGGTGCTGG	204	False	NA	NA	False	NA	NA	NA	126248573	126271411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270833_126270905_126271053_126271209_126271246_126271327
transcript_124872.known	chr7	-	1660	11	FSM	ENSMUSG00000030707.16	ENSMUST00000032949.14	1660	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	5.95315042645489	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCAGACTCCGGTGAACT	NA	False	NA	NA	False	AATAAA	-21	NA	126303988	126298944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163_126300269_126300461_126300582_126300689_126300875_126300961_126301092_126301177_126301301_126302147_126302347_126303823
transcript_124873.known	chr7	-	3152	6	FSM	ENSMUSG00000059772.13	ENSMUST00000144897.2	3152	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	7.98498591107085	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGGCTTCAGGCCACAA	4987	False	NA	NA	False	AATAAA	-24	NA	126294956	126288639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126291924_126291977_126294596
transcript_124874.known	chr7	-	1390	5	FSM	ENSMUSG00000059772.13	ENSMUST00000142337.7	1390	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	31.8276609256791	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGGCTGAGACAGTTT	5047	False	NA	NA	False	NA	NA	NA	126294896	126290289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126294596
transcript_124875.known	chr7	-	2062	5	FSM	ENSMUSG00000059772.13	ENSMUST00000084586.9	2062	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	7.44983221287567	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAAAGTTCTAGCCG	5132	False	NA	NA	False	NA	NA	NA	126294811	126289849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126290828_126290910_126290996_126291099_126291832_126291924_126291977_126294596
transcript_124876.known	chr7	-	1567	5	FSM	ENSMUSG00000059772.13	ENSMUST00000155012.3	1567	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	8.78919791562347	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGGCTGAGACAGTTT	5026	False	NA	NA	False	NA	NA	NA	126294917	126290289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126290828_126290910_126291228_126291492_126291832_126291924_126291977_126294596
transcript_12488.known	chr10	+	1758	6	FSM	ENSMUSG00000113262.2	ENSMUST00000144647.8	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	364.148541120241	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATGACCTTTTTGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	81220299	81227394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81226192_81226419_81226622
transcript_124883.known	chr7	+	1266	3	FSM	ENSMUSG00000047721.9	ENSMUST00000130498.2	1266	3	0	0	0	0	multi-exon	FALSE	canonical	3	2284	junction_2	148	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACACAATGCACGCTGATG	611	False	NA	NA	False	NA	NA	NA	126294607	126296230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126295272_126295354_126295453_126295726
transcript_124885.known	chr7	+	642	2	FSM	ENSMUSG00000047721.9	ENSMUST00000106369.2	642	2	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCAGTGTGCTGTT	1148	False	NA	22	True	ATTAAA	-17	NA	126295144	126295869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126295272_126295354
transcript_124886.known	chr7	+	1800	9	FSM	ENSMUSG00000063065.14	ENSMUST00000057669.16	1800	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_5	18.155147341732	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTCTGTCTGTGTAT	5216	False	NA	31	True	TATAAA	-24	NA	126358772	126364991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126358991_126359902_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
transcript_124892.known	chr7	+	436	2	FSM	ENSMUSG00000063065.14	ENSMUST00000206875.2	436	2	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCCAGCAAAGTAACTTT	5275	False	NA	NA	False	NA	NA	NA	126358831	126360179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126358991_126359902
transcript_124893.known	chr7	+	1148	10	FSM	ENSMUSG00000030703.9	ENSMUST00000032944.9	1148	10	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_3	2.43938871112224	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTCATGGAACAAGGG	NA	False	NA	12	True	AATAAA	-18	NA	126365505	126374817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126365782_126366073_126366117_126366346_126366483_126366562_126366609_126366738_126366858_126366934_126367025_126367741_126367876_126370159_126370220_126370333_126370386_126374625
transcript_124894.known	chr7	+	973	5	FSM	ENSMUSG00000042675.16	ENSMUST00000038614.12	973	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	12.73528562695	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTGGCTCACATGGAAT	8221	False	NA	17	True	AATAAA	-18	NA	126376126	126379686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126376276_126376942_126377126_126377225_126377270_126377477_126377587_126379198
transcript_124896.nic	chr7	+	953	4	NIC	ENSMUSG00000042675.16	novel	973	5	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	89.6449787897918	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCCTGGCTCACATGG	8194	False	NA	14	True	AATAAA	-15	NA	126376099	126379683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_126376276_126376942_126377126_126377477_126377587_126379198
transcript_124897.known	chr7	+	1594	4	FSM	ENSMUSG00000042675.16	ENSMUST00000106357.8	1594	4	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_1	13.6381816969859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTGGCTCACATGGAAT	8267	False	NA	17	True	AATAAA	-18	NA	126376172	126379686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126377126_126377225_126377270_126377477_126377587_126379198
transcript_12490.known	chr10	+	1444	5	FSM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_3	32.2286751201473	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220261	81224186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81223540
transcript_124911.known	chr7	-	1359	9	FSM	ENSMUSG00000030697.8	ENSMUST00000032936.8	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_8	282.244574792856	4444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5070	False	NA	NA	False	AATAAA	-15	NA	126391668	126385037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232_126391396_126391594
transcript_124915.known	chr7	-	881	8	FSM	ENSMUSG00000030697.8	ENSMUST00000205935.2	881	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	908.071807823184	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAATGTGGCAGCCATCT	5073	False	NA	NA	False	NA	NA	NA	126391665	126385460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126391232_126391396_126391594
transcript_12492.nic	chr10	+	1496	5	NIC	ENSMUSG00000078440.11	novel	1444	5	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	318.019653480724	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220257	81224186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_81220461_81221552_81221882_81222246_81222324_81223073_81223315_81223540
transcript_124928.known	chr7	-	1984	1	FSM	ENSMUSG00000030697.8	ENSMUST00000205862.2	1984	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAAAGGTAGACCT	5070	False	NA	NA	False	NA	NA	NA	126391668	126389684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126389700_126391700
transcript_124929.known	chr7	-	1400	8	FSM	ENSMUSG00000030697.8	ENSMUST00000206570.2	1400	8	0	0	0	0	multi-exon	FALSE	canonical	3	2424	junction_1	142.291307979548	809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAGGTTCTGTCAGGTT	5226	False	NA	NA	False	AATAAA	-13	NA	126391512	126385039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
transcript_124935.known	chr7	-	1549	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	-5	True	AATAAA	-16	NA	126398313	126394407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
transcript_124937.known	chr7	-	1460	9	FSM	ENSMUSG00000030695.17	ENSMUST00000106348.8	1460	9	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	6626.46755325754	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTTCATGTCTTG	NA	False	NA	-4	True	AATAAA	-17	NA	126399619	126394406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459
transcript_124940.known	chr7	-	741	4	FSM	ENSMUSG00000114515.3	ENSMUST00000207534.3	741	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	6.97614984548545	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGAGCTATGGATGGCAG	8434	False	NA	NA	False	NA	NA	NA	126408280	126399961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126400167_126406855_126407012_126407267_126407409_126408041
transcript_124941.known	chr7	-	1511	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	0	0	0	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	5588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398426	126394405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
transcript_124943.known	chr7	+	2538	11	FSM	ENSMUSG00000052301.15	ENSMUST00000064110.14	2538	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.4829240241794	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTTGAGTTTGCTGGC	671	False	NA	4	True	AATAAA	-15	NA	126446724	126451877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126447205_126447586_126448035_126448391_126448472_126448653_126448729_126448833_126448944_126450105_126450233_126450311_126450372_126450454_126450619_126450708_126450791_126450880_126450978_126451062
transcript_124962.nic	chr7	-	1422	8	NIC	ENSMUSG00000030689.16	novel	1741	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_7	292.908775936141	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9903	False	NA	-4	True	ATTAAA	-15	NA	126461563	126451604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
transcript_124966.known	chr7	+	2766	7	FSM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	39.0498257216199	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTCTCAGGCTCAGT	1476	False	NA	8	True	NA	NA	NA	126461143	126464549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
transcript_12498.known	chr10	+	901	4	FSM	ENSMUSG00000078439.10	ENSMUST00000105322.9	901	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCTTTGTGTAGGCTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	81228884	81231226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81228994_81229617_81229730_81229921_81229985_81230609
transcript_124983.known	chr7	+	937	3	FSM	ENSMUSG00000042606.10	ENSMUST00000150942.2	937	3	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGGGGGCACAGTGGG	1968	False	NA	NA	False	NA	NA	NA	126461635	126462897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126461689_126461771_126462099_126462340
transcript_124986.known	chr7	-	1973	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106343.3	1973	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	102.030496530313	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTTTGTGCTTGGA	9194	False	NA	-4	True	ATTAAA	-26	NA	126461010	126450756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
transcript_124987.known	chr7	-	5328	3	FSM	ENSMUSG00000030689.16	ENSMUST00000154881.8	5328	3	0	0	0	0	multi-exon	FALSE	canonical	3	925	junction_2	41	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAAAACAAATGGG	9163	False	NA	NA	False	NA	NA	NA	126461041	126455372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126460465_126460647_126460719_126460876
transcript_124988.known	chr7	-	4720	19	FSM	ENSMUSG00000059981.13	ENSMUST00000071268.11	4720	19	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_2	21.6270292703766	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACAGGATGTCTCCCTTT	8433	False	NA	-5	True	AATAAA	-20	NA	126483875	126464849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126466088_126466168_126466352_126467281_126467495_126470573_126470814_126471077_126471282_126471368_126471735_126473469_126473629_126473820_126474106_126474228_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
transcript_124993.known	chr7	-	4985	16	FSM	ENSMUSG00000059981.13	ENSMUST00000117394.2	4985	16	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_14	9.03228776236797	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTTGGCCCAGGCTGCC	8433	False	NA	NA	False	NA	NA	NA	126483875	126468674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126470814_126471077_126471282_126471368_126471735_126473469_126473629_126473820_126474106_126474228_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
transcript_124997.nic	chr7	-	1987	12	ISM	ENSMUSG00000059981.13	ENSMUST00000117394.2	4985	16	-2	5278	-2	5016	5prime_fragment	FALSE	canonical	3	97	junction_10	8.14943084764181	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGGAGGAAGAAGAAGA	8431	False	NA	NA	False	NA	NA	NA	126483877	126473952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_126474106_126474228_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
transcript_1250.known	chr1	-	2492	7	FSM	ENSMUSG00000048234.14	ENSMUST00000062525.11	2492	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	11.4661337085446	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCTATGTAACAAATTT	4717	False	NA	-3	True	AATAAA	-17	NA	39616486	39590376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_39591597_39594558_39594752_39597395_39597493_39599773_39599857_39603128_39603198_39604162_39604414_39615907
transcript_12500.known	chr10	-	3348	10	FSM	ENSMUSG00000055053.19	ENSMUST00000020461.15	3348	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	5.66557723732532	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCCATTA	3912	False	NA	NA	False	AAAAAG	-44	NA	81263007	81234971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
transcript_125000.nic	chr7	-	1757	11	ISM	ENSMUSG00000059981.13	ENSMUST00000117394.2	4985	16	8	5621	8	4673	5prime_fragment	FALSE	canonical	3	97	junction_9	8.0529497701153	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAAGAAGATACTGTTCC	8441	False	NA	NA	False	NA	NA	NA	126483867	126474295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
transcript_125004.known	chr7	+	1676	6	FSM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	8.49470423263812	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGACTCTCGGGTGAG	NA	False	NA	25	True	AATAAA	-17	NA	126528050	126544803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126528471_126529804_126529975_126540504_126540595_126540682_126540736_126541318_126541515_126544056
transcript_125006.known	chr7	-	1647	3	FSM	ENSMUSG00000046378.12	ENSMUST00000106340.8	1647	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCACGATAGCAGAGCTG	NA	False	NA	NA	False	AATAAA	-12	NA	126548331	126544738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126545383_126545888_126546003_126547442
transcript_125008.known	chr7	+	806	6	FSM	ENSMUSG00000030682.5	ENSMUST00000206346.2	806	6	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_4	157.366578408505	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAGCAGACCGCGCCAAG	NA	False	NA	NA	False	AAGAAA	-15	NA	126575759	126578823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578476_126578576_126578706
transcript_12501.known	chr10	-	1655	10	FSM	ENSMUSG00000055053.19	ENSMUST00000117966.2	1655	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	6.76775214792936	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGGACTCCCAGCTGGAT	80	False	NA	NA	False	NA	NA	NA	81266839	81236786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81266619
transcript_125012.known	chr7	+	1838	6	FSM	ENSMUSG00000030682.5	ENSMUST00000206794.2	1838	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	162.28739938763	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTTTCTCAGAGCATG	NA	False	NA	22	True	NA	NA	NA	126575607	126579671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578037_126578169_126578493_126578576_126578706
transcript_125015.nnic	chr7	-	2799	15	NNC	ENSMUSG00000030681.19	novel	2837	15	NA	NA	8064	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	31.9071516517945	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	NA	False	NA	0	True	AATAAA	-21	NA	126602973	126586031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126602908
transcript_125016.nic	chr7	-	2835	15	NIC	ENSMUSG00000030681.19	novel	2837	15	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	31.9071516517945	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	NA	False	NA	0	True	AATAAA	-21	NA	126611073	126586031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126610972
transcript_125017.known	chr7	-	2837	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	NA	False	NA	0	True	AATAAA	-21	NA	126613793	126586031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
transcript_125023.nnic	chr7	-	2269	11	NNC	ENSMUSG00000030681.19	novel	2837	15	NA	NA	15227	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_10	35.3926546051578	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	5532	False	NA	0	True	AATAAA	-21	NA	126595810	126586031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126595673
transcript_125024.known	chr7	-	4373	3	FSM	ENSMUSG00000107068.2	ENSMUST00000032918.4	4373	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	10	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGCGTGGTGGCGCACG	6455	False	NA	-34	True	AATAAA	-14	NA	126619499	126614236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126614642_126615371_126615455_126615614
transcript_125029.nic	chr7	-	2683	7	NIC	ENSMUSG00000030678.8	novel	2650	6	NA	NA	-158	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	310.082784645219	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	NA	False	NA	-27	True	AATAAA	-18	NA	126626367	126621301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399_126625487_126626122
transcript_12503.known	chr10	-	1531	10	FSM	ENSMUSG00000055053.19	ENSMUST00000221817.2	1531	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	10.2246373958465	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGGACTCCCAGCTGGAT	7347	False	NA	NA	False	NA	NA	NA	81291469	81236786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81291373
transcript_125034.nnic	chr7	-	2867	7	NNC	ENSMUSG00000030678.8	novel	2282	6	NA	NA	-341	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_6	241.899944880798	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGAGTTCCTAAG	NA	False	NA	-31	True	AATAAA	-14	NA	126626550	126621305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_126622341_126622648_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399_126625487_126626122
transcript_125045.known	chr7	-	2282	6	FSM	ENSMUSG00000030678.8	ENSMUST00000206254.2	2282	6	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_5	257.403496479749	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTCTCTGAGTTCCTAA	NA	False	NA	-32	True	AATAAA	-13	NA	126626196	126621306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475_126625327_126625399_126625487_126626122
transcript_125049.known	chr7	-	2650	6	FSM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	289.408085581588	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	256	False	NA	-27	True	AATAAA	-18	NA	126625698	126621301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399
transcript_125050.known	chr7	-	2347	5	FSM	ENSMUSG00000030678.8	ENSMUST00000032916.6	2347	5	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	136.928813622261	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGAGTTCCTAAG	330	False	NA	-31	True	AATAAA	-14	NA	126625624	126621305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475_126625327_126625399
transcript_125057.known	chr7	-	2115	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	1165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAGCCTGGTTTTTGA	7925	False	NA	-6	True	AATACA	-13	NA	126641643	126626902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
transcript_125063.nic	chr7	-	2269	13	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-29	0	intron_retention	FALSE	canonical	3	712	junction_7	45.9422191453569	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	7896	False	NA	-7	True	AATACA	-12	NA	126641672	126626903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
transcript_12508.known	chr10	-	6237	9	FSM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_1	7.0611171212493	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTTCTTCCTTTCTG	3898	False	NA	NA	False	NA	NA	NA	81263021	81232019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81236906_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
transcript_125085.nnic	chr7	+	2257	3	NNC	ENSMUSG00000045165.7	novel	1932	2	NA	NA	-699	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	45	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTTGTATGACCTCTG	NA	False	NA	6	True	NA	NA	NA	126689831	126693158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_126690035_126690408_126690645_126691340
transcript_125086.known	chr7	+	1932	2	FSM	ENSMUSG00000045165.7	ENSMUST00000056288.7	1932	2	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	0	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTTGTATGACCTCTG	NA	False	NA	6	True	NA	NA	NA	126690530	126693158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126690645_126691340
transcript_125088.known	chr7	-	2050	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCTGCATGGCACCTC	NA	False	NA	NA	False	NA	NA	NA	126721398	126706285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
transcript_125090.known	chr7	-	1309	7	FSM	ENSMUSG00000042502.11	ENSMUST00000035771.5	1309	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	224.819680830858	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5583	False	NA	-4	True	AATAAA	-40	NA	126795047	126792829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126794958
transcript_125094.known	chr7	-	2912	7	FSM	ENSMUSG00000042502.11	ENSMUST00000205316.2	2912	7	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_6	218.502034061216	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGTGGTAATTTAATAAA	5471	False	NA	-1	True	NA	NA	NA	126795159	126791196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126795100
transcript_125096.known	chr7	-	3614	9	FSM	ENSMUSG00000042492.13	ENSMUST00000120705.3	3614	9	0	0	0	0	multi-exon	FALSE	canonical	3	338	junction_3	35.2311563108564	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGGTCCAGCTCCTTC	1542	False	NA	NA	False	AGTAAA	-27	NA	126807640	126796630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126798385_126798469_126798625_126798904_126799095_126799266_126799333_126799456_126799572_126802343_126802451_126802545_126802654_126802912_126803013_126806621
transcript_125112.nnic	chr7	+	824	8	NIC	ENSMUSG00000030672.13	novel	653	7	NA	NA	-48	0	combination_of_known_splicesites	FALSE	canonical	3	59	junction_2	781.490099431979	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	194	False	NA	31	True	AATAAA	-23	NA	126808013	126813459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_126808124_126808455_126808571_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_125113.known	chr7	+	653	7	FSM	ENSMUSG00000030672.13	ENSMUST00000206772.2	653	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	719.114598346853	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	251	False	NA	32	True	AATAAA	-24	NA	126808070	126813460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126808124_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_125114.known	chr7	+	766	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	683.213892000318	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTGTGTTCATGCGCA	2960	False	NA	42	True	AATAAA	-34	NA	126810779	126813470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_125115.nic	chr7	+	818	7	NIC	ENSMUSG00000030672.13	novel	268	4	NA	NA	-190	0	combination_of_known_junctions	FALSE	canonical	3	184	junction_1	671.232365793612	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	3841	False	NA	31	True	AATAAA	-23	NA	126811660	126813459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_126811880_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_125120.known	chr7	-	1486	11	FSM	ENSMUSG00000000486.14	ENSMUST00000106314.8	1486	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_10	48.9043965303734	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTCCCGCCTTCCCCCA	NA	False	NA	-22	True	AATAAA	-3	NA	126817670	126813633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
transcript_12513.known	chr10	-	3163	9	FSM	ENSMUSG00000055053.19	ENSMUST00000078185.14	3163	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10.3802697460133	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCCATTA	3971	False	NA	NA	False	AAAAAG	-44	NA	81262948	81234971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
transcript_125137.nic	chr7	-	2390	8	NIC	ENSMUSG00000000486.14	novel	1486	11	NA	NA	-12	0	intron_retention	FALSE	canonical	3	221	junction_7	53.4220775274318	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126817655	126813618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126817230_126817312_126817404_126817578
transcript_125141.known	chr7	-	706	7	FSM	ENSMUSG00000000486.14	ENSMUST00000142356.3	706	7	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_6	94.5035272710319	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATGAAGAAATGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	126817562	126815056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817496
transcript_125145.known	chr7	+	3342	2	FSM	ENSMUSG00000045598.11	ENSMUST00000106312.4	3342	2	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACATTGTCATAGACAACT	8108	False	NA	0	True	AATAAA	-1	NA	126832232	126837351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126832659_126834435
transcript_125149.known	chr7	+	3043	2	FSM	ENSMUSG00000045598.11	ENSMUST00000056232.7	3043	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGGTTATGTGTA	8302	False	NA	28	True	AATAAA	-18	NA	126832426	126837215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126832690_126834435
transcript_125154.known	chr7	+	827	1	FSM	ENSMUSG00000045598.11	ENSMUST00000205367.2	827	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAGAAAAAAAAAAA	8341	False	NA	NA	False	NA	NA	NA	126832465	126833292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126832500_126833300
transcript_125155.known	chr7	-	575	2	FSM	ENSMUSG00000000486.14	ENSMUST00000131208.2	575	2	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126814297	126813618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126814017_126814120
transcript_125157.known	chr7	+	1484	3	FSM	ENSMUSG00000054716.5	ENSMUST00000052509.6	1484	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	20	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACGATGCCTGTAAGTGA	NA	False	NA	31	True	AATAAA	-16	NA	126843445	126853975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_126843781_126844156_126844307_126852976
transcript_125159.known	chr7	-	676	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	3852	junction_1	65	1700	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCGATTTTTCTTGAGT	2490	False	NA	-1	True	AATAAA	-18	NA	126859881	126856130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126856509_126858529_126858641_126859694
transcript_12516.known	chr10	-	4391	12	FSM	ENSMUSG00000034818.18	ENSMUST00000118763.8	4391	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.33903278732157	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTGTCACCTTGTTTTC	NA	False	NA	0	True	AATAAA	-22	NA	81318543	81295060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81298176_81298502_81298606_81300173_81300255_81301800_81301864_81302758_81302906_81302989_81303132_81303818_81303966_81305277_81305358_81306462_81306592_81307139_81307192_81312702_81312786_81318294
transcript_125160.known	chr7	-	2177	1	FSM	ENSMUSG00000049091.8	ENSMUST00000082428.6	2177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1626	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGCTAATGTTTGGTT	2841	False	NA	-8	True	AATAAA	-19	NA	126873227	126871050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126871000_126873200
transcript_125163.known	chr7	-	2356	2	FSM	ENSMUSG00000047371.8	ENSMUST00000060783.7	2356	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTCGTCCTTAAGATGT	5321	False	NA	-1	True	AATAAA	-16	NA	126944595	126941966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126944048_126944320
transcript_125164.known	chr7	-	2513	2	FSM	ENSMUSG00000047371.8	ENSMUST00000205266.2	2513	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTCGTCCTTAAGATGT	5155	False	NA	-1	True	AATAAA	-16	NA	126944761	126941966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126944039_126944320
transcript_125165.known	chr7	-	2684	3	FSM	ENSMUSG00000054381.6	ENSMUST00000067425.6	2684	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	4	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGATTTCTGCTCCTC	915	False	NA	NA	False	NA	NA	NA	126975222	126971708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126973871_126974560_126974675_126974814
transcript_12517.known	chr10	-	2042	12	FSM	ENSMUSG00000034818.18	ENSMUST00000120508.8	2042	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.44273251682626	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCCCTTCAATAGTCTC	NA	False	NA	NA	False	NA	NA	NA	81318518	81297381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81298176_81298502_81298606_81300173_81300255_81301800_81301864_81302758_81302906_81302989_81303132_81303818_81303966_81305277_81305358_81306462_81306592_81307142_81307192_81312702_81312786_81318294
transcript_125170.known	chr7	-	3878	3	FSM	ENSMUSG00000030823.7	ENSMUST00000049052.4	3878	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTATTTTGTGGGTTCT	NA	False	NA	NA	False	NA	NA	NA	126986338	126981431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126984803_126985691_126985806_126985945
transcript_125172.nnic	chr7	-	2102	4	Fusion	ENSMUSG00000054381.6_ENSMUSG00000078580.4	novel	3324	3	NA	NA	-27	-461	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTCTAAATAACTGTA	9116	False	NA	NA	False	AATAAA	-5	NA	126992828	126972169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_-_126972376_126990309_126991688_126992172_126992287_126992424
transcript_125175.known	chr7	-	576	3	FSM	ENSMUSG00000078580.4	ENSMUST00000106303.3	576	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTGCTTCCCCTTCTT	9152	False	NA	NA	False	NA	NA	NA	126992792	126991590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_126991688_126992172_126992284_126992424
transcript_125176.known	chr7	-	2508	3	FSM	ENSMUSG00000045757.7	ENSMUST00000059199.7	2508	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGATTTCTGCTCCTC	8601	False	NA	NA	False	AATAAA	-19	NA	127005994	127002839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127004832_127005337_127005452_127005592
transcript_125177.known	chr7	-	2405	3	FSM	ENSMUSG00000045757.7	ENSMUST00000139118.2	2405	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAGAAAGAAACAA	8640	False	NA	NA	False	TATAAA	-19	NA	127005955	127002866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127004832_127005337_127005452_127005629
transcript_125180.known	chr7	-	1302	4	FSM	ENSMUSG00000045251.14	ENSMUST00000148483.8	1302	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	18.7794213613377	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	-1	True	NA	-4	True	ATTAAA	-17	NA	127021211	127018138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127018814_127019181_127019278_127020576_127020691_127020794
transcript_125181.nnic	chr7	-	1290	4	NNC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	22.553639765383	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6899	False	NA	-4	True	ATTAAA	-17	NA	127021225	127018138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020820
transcript_125182.nic	chr7	-	1153	4	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	9.62635271879577	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6876	False	NA	-4	True	ATTAAA	-17	NA	127021248	127018138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020980
transcript_125185.nnic	chr7	-	1025	3	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	25.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6890	False	NA	-4	True	ATTAAA	-17	NA	127021234	127018138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_127018814_127019181_127019278_127020980
transcript_125186.nic	chr7	-	1214	3	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	12.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6905	False	NA	-4	True	ATTAAA	-17	NA	127021219	127018138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_127018814_127020576_127020691_127020794
transcript_125187.nnic	chr7	-	1194	3	NNC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	17	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6899	False	NA	-4	True	ATTAAA	-17	NA	127021225	127018138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_127018814_127020576_127020691_127020820
transcript_125188.known	chr7	-	1015	3	FSM	ENSMUSG00000045251.14	ENSMUST00000106300.2	1015	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	4	True	NA	-4	True	ATTAAA	-17	NA	127021206	127018138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127018814_127020576_127020691_127020980
transcript_125189.known	chr7	-	338	2	FSM	ENSMUSG00000045251.14	ENSMUST00000126756.2	338	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTGGTGAGCGACCCTT	7102	False	NA	NA	False	NA	NA	NA	127021022	127018517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127018814_127020980
transcript_125190.known	chr7	-	1298	2	FSM	ENSMUSG00000045251.14	ENSMUST00000136123.8	1298	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127018814_127020576
transcript_125192.known	chr7	+	2175	13	FSM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	75.4609446446748	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTCCTTTGTGCC	NA	False	NA	9	True	TATAAA	-14	NA	127069542	127075931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127069596_127070156_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
transcript_125197.known	chr7	+	2402	11	FSM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_10	17.7132718603876	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	8	True	TATAAA	-13	NA	127070661	127075930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
transcript_125198.nic	chr7	+	2735	11	NIC	ENSMUSG00000030822.16	novel	2402	11	NA	NA	42	0	intron_retention	FALSE	canonical	2	49	junction_10	56.3490017657811	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTCTGACTCCTTTG	NA	False	NA	5	True	TATAAA	-10	NA	127070265	127075927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075615
transcript_1252.nic	chr1	-	1784	7	NIC	ENSMUSG00000048234.14	novel	2492	7	NA	NA	-17	-397	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	65.8847900167827	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGGCAAAAAATGCCATAT	4700	False	NA	NA	False	NA	NA	NA	39616503	39590773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_39591597_39594558_39594752_39597395_39597493_39599773_39599857_39603128_39603198_39604162_39604414_39616235
transcript_125203.nic	chr7	+	2713	10	ISM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	-225	4	-184	-1	intron_retention	FALSE	canonical	3	203	junction_3	16.1229841308596	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTTCTGACTCCTTT	NA	False	NA	4	True	TATAAA	-9	NA	127070436	127075926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393
transcript_125224.known	chr7	-	3621	3	FSM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	4.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTGCTCCTTCTGGAA	4357	False	NA	NA	False	ATTAAA	-14	NA	127048330	127041307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127044310_127047534_127047649_127047825
transcript_125230.known	chr7	+	2650	11	FSM	ENSMUSG00000042423.10	ENSMUST00000048896.8	2650	11	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_2	6.82348884369279	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCCGGCTCCTCTTTGAG	560	False	NA	36	True	TATAAA	-30	NA	127084392	127090685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127084415_127084524_127084570_127084765_127084862_127085099_127085169_127086031_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
transcript_125233.known	chr7	+	2048	10	FSM	ENSMUSG00000053877.13	ENSMUST00000188124.7	2048	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	13.723009424114	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCAGTTATTGAGTATT	NA	False	NA	NA	False	AATAAA	-19	NA	127111154	127128494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128309
transcript_125240.known	chr7	+	1257	8	FSM	ENSMUSG00000053877.13	ENSMUST00000098025.11	1257	8	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_5	20.5128133176335	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAACGTAAGAAAGCC	NA	False	NA	NA	False	NA	NA	NA	127111198	127124495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120732_127120732_127120834_127121160_127121302_127124464
transcript_125241.known	chr7	+	2904	8	FSM	ENSMUSG00000053877.13	ENSMUST00000185401.7	2904	8	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	6.55588223176215	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATTTATGCTCT	NA	False	NA	NA	False	TTTAAA	-18	NA	127111154	127126212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802
transcript_125246.nic	chr7	+	1373	4	ISM	ENSMUSG00000053877.13	ENSMUST00000189136.7	1960	6	-5	2562	-5	306	5prime_fragment	FALSE	canonical	3	58	junction_2	2.05480466765633	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAAGGAGGTAACCGAG	NA	False	NA	NA	False	AATAAA	-7	NA	127111168	127119447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752
transcript_125247.nic	chr7	+	1672	4	ISM	ENSMUSG00000053877.13	ENSMUST00000189136.7	1960	6	-5	2263	-5	605	5prime_fragment	FALSE	canonical	3	58	junction_2	2.05480466765633	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGCAAGAAACCAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	127111168	127119746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752
transcript_125251.known	chr7	+	1054	3	FSM	ENSMUSG00000106715.4	ENSMUST00000084563.11	1054	3	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGTCTAATTGCTCTTT	NA	False	NA	17	True	AATAAA	-20	NA	127160561	127164442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127160958_127162293_127162465_127163955
transcript_125252.known	chr7	-	2432	1	FSM	ENSMUSG00000101225.2	ENSMUST00000185351.2	2432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTCCTA	10001	False	NA	NA	False	AATAAA	-35	NA	127112041	127109609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127109600_127112000
transcript_125253.nic	chr7	+	1588	10	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	38.5313724991294	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172486	127182472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_125254.known	chr7	+	1570	10	FSM	ENSMUSG00000030815.12	ENSMUST00000033086.8	1570	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	31.2018517968975	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGTCTGCTGTCTAGT	NA	False	NA	26	True	AATAAA	-27	NA	127172575	127182479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127172629_127173025_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_125256.nic	chr7	+	1533	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	33.5016324229134	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172486	127182472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_125257.nic	chr7	+	1575	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	38.180492401225	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172486	127182472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176861_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_125259.nic	chr7	+	1916	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-25	0	intron_retention	FALSE	canonical	3	65	junction_3	23.0475052879916	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172486	127182472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_125262.known	chr7	-	2536	9	FSM	ENSMUSG00000057176.5	ENSMUST00000072155.5	2536	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	3.80788655293195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCATGCGTAGCATCAGG	8286	False	NA	NA	False	AGTAAA	-18	NA	127187767	127181554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184434_127184625_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
transcript_125277.known	chr7	+	1918	3	FSM	ENSMUSG00000030815.12	ENSMUST00000151908.8	1918	3	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	14	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127172575	127178458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127172629_127173025_127173139_127176706
transcript_125278.known	chr7	+	1426	3	FSM	ENSMUSG00000030815.12	ENSMUST00000129457.2	1426	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	70	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAATTCATGAAGC	NA	False	NA	NA	False	NA	NA	NA	127172511	127177793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127172629_127172916_127173139_127176706
transcript_125279.known	chr7	-	1036	2	FSM	ENSMUSG00000057176.5	ENSMUST00000206220.2	1036	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACTGGATTCTAGACCA	8501	False	NA	NA	False	AATAAA	-20	NA	127187552	127186235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127186768_127187048
transcript_125280.known	chr7	+	1840	9	FSM	ENSMUSG00000030815.12	ENSMUST00000121004.3	1840	9	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	32.8954309137303	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCATGTCTGCTGTCTA	NA	False	NA	24	True	AATAAA	-25	NA	127172700	127182477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_125283.nnic	chr7	+	4164	20	NNC	ENSMUSG00000030816.9	novel	5279	20	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_5	86.3204427500525	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCCCGTCCATTTGGTC	NA	False	NA	21	True	AATAAA	-22	NA	127187881	127202766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190453_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
transcript_125284.known	chr7	+	5279	20	FSM	ENSMUSG00000030816.9	ENSMUST00000205694.2	5279	20	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_5	49.1177002358039	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGCTTTCTTCTCTC	NA	False	NA	NA	False	AAAACA	-27	NA	127187938	127203971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190486_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
transcript_12529.known	chr10	-	2841	14	FSM	ENSMUSG00000020238.15	ENSMUST00000118498.8	2841	14	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_4	76.7224306246012	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCCAGGTGTCCTGAG	NA	False	NA	-30	True	AATAAA	-18	NA	81332160	81322290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324190_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
transcript_125294.nic	chr7	+	4218	19	NIC	ENSMUSG00000030816.9	novel	5279	20	NA	NA	-57	0	intron_retention	FALSE	canonical	3	259	junction_5	49.6009072497671	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCCCGTCCATTTGGTC	NA	False	NA	21	True	AATAAA	-22	NA	127187881	127202766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190486_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
transcript_12530.known	chr10	-	3118	14	FSM	ENSMUSG00000020238.15	ENSMUST00000020463.14	3118	14	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_4	53.9264236863306	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACCAGAACCCTGCTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	81332226	81322082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
transcript_125314.known	chr7	-	891	6	FSM	ENSMUSG00000030814.18	ENSMUST00000205977.2	891	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	191.890176924198	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAGTCATTTACCCACAC	NA	False	NA	NA	False	NA	NA	NA	127307811	127265967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127266219_127304898_127304985_127306347_127306510_127306604_127306714_127307051_127307131_127307607
transcript_125319.known	chr7	-	1132	6	FSM	ENSMUSG00000030814.18	ENSMUST00000061468.9	1132	6	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_4	29.8971570554794	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCATGTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	127308105	127304149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127304348_127304898_127304985_127306347_127306510_127306604_127306714_127307051_127307131_127307607
transcript_125324.known	chr7	-	654	4	FSM	ENSMUSG00000030814.18	ENSMUST00000207019.2	654	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	237.476080666851	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCATGTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	127307898	127304149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127304348_127304898_127304985_127307051_127307131_127307607
transcript_125325.known	chr7	+	1352	3	FSM	ENSMUSG00000042340.7	ENSMUST00000047393.7	1352	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	5.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTCCATGTGGGGAGAG	NA	False	NA	NA	False	AATAAA	-37	NA	127311907	127317364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127311952_127313096_127313216_127316175
transcript_125326.known	chr7	+	784	3	FSM	ENSMUSG00000042340.7	ENSMUST00000206506.2	784	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	127312115	127316762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127312194_127313096_127313216_127316175
transcript_125349.nic	chr7	+	3931	11	NIC	ENSMUSG00000030811.15	novel	3641	11	NA	NA	-231	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	33.2511653931107	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTGACTTTTTGTGTCT	297	False	NA	15	True	TATAAA	-19	NA	127344710	127368655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127345040_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
transcript_125352.nic	chr7	+	3355	11	NIC	ENSMUSG00000030811.15	novel	3410	11	NA	NA	-275	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	29.982661656364	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGAAGTGTTACTTGAAC	1258	False	NA	11	True	NA	NA	NA	127345671	127367899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127346310_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
transcript_125353.nic	chr7	+	3800	11	NIC	ENSMUSG00000030811.15	novel	3410	11	NA	NA	470	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	29.982661656364	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTCCAGTTTGGCTCTTC	1014	False	NA	4	True	NA	NA	NA	127345427	127368100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127346310_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
transcript_125354.nic	chr7	+	4355	11	NIC	ENSMUSG00000030811.15	novel	3449	10	NA	NA	470	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	29.982661656364	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTGACTTTTTGTGTCT	1014	False	NA	15	True	TATAAA	-19	NA	127345427	127368655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127346310_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
transcript_125355.known	chr7	+	3410	11	FSM	ENSMUSG00000030811.15	ENSMUST00000033081.14	3410	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	25.7536405193518	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTCCAGTTTGGCTCTTC	1533	False	NA	4	True	NA	NA	NA	127345946	127368100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127346310_127347421_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350199_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
transcript_125359.known	chr7	+	3641	11	FSM	ENSMUSG00000030811.15	ENSMUST00000186116.7	3641	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	40.5892843001697	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGGCCGCTGACTTTT	544	False	NA	8	True	TATAAA	-12	NA	127344957	127368648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127345040_127347459_127347623_127348881_127349026_127349152_127349240_127349319_127349539_127350036_127350201_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
transcript_12537.nic	chr10	-	2965	13	NIC	ENSMUSG00000020238.15	novel	2841	14	NA	NA	14	0	intron_retention	FALSE	canonical	3	345	junction_12	32.4987179234299	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCCAGGTGTCCTGAG	NA	False	NA	-30	True	AATAAA	-18	NA	81332212	81322290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
transcript_125389.known	chr7	+	2601	9	FSM	ENSMUSG00000030811.15	ENSMUST00000188580.3	2601	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_3	39.2681088798531	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGAAGTGTTACTTGAAC	2905	False	NA	11	True	NA	NA	NA	127347318	127367899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127347623_127348881_127349026_127349152_127349240_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
transcript_125390.known	chr7	+	2141	3	FSM	ENSMUSG00000043964.15	ENSMUST00000121504.2	2141	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTTATTCCCAGACTA	NA	False	NA	NA	False	GATAAA	-15	NA	127368986	127374322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127369389_127369905_127370051_127372728
transcript_125394.known	chr7	+	1996	2	FSM	ENSMUSG00000043964.15	ENSMUST00000061587.13	1996	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTTATTCCCAGACTA	NA	False	NA	NA	False	GATAAA	-15	NA	127368986	127374322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127369389_127372728
transcript_125396.known	chr7	+	5927	19	FSM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_7	11.9666460332021	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGCTTGGTCAGTA	NA	False	NA	10	True	ATTAAA	-10	NA	127376560	127399287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127376686_127377284_127377450_127377677_127377774_127379556_127379828_127382800_127382923_127383144_127383375_127384019_127384909_127385052_127385845_127386297_127386475_127386670_127386759_127387368_127387527_127387653_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
transcript_125399.known	chr7	+	1828	7	FSM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	10.2794292967395	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
transcript_1254.nic	chr1	-	2034	6	NIC	ENSMUSG00000048234.14	novel	2492	7	NA	NA	-36	-397	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	66.5924920693016	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGGCAAAAAATGCCATAT	4681	False	NA	NA	False	NA	NA	NA	39616522	39590773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_39591597_39594558_39594752_39599773_39599857_39603128_39603198_39604162_39604414_39615907
transcript_125404.nic	chr7	+	2250	6	ISM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	-35	0	-35	0	intron_retention	TRUE	canonical	3	82	junction_2	5.54977477020464	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1849	False	NA	14	True	AATAAA	-15	NA	127399740	127402974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407
transcript_125405.known	chr7	+	1899	6	FSM	ENSMUSG00000042289.12	ENSMUST00000132702.8	1899	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	11.2178429299041	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407_127401571_127401957
transcript_125409.known	chr7	+	2286	5	FSM	ENSMUSG00000042289.12	ENSMUST00000144748.8	2286	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	5.22015325445528	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407
transcript_12541.known	chr10	-	2386	1	FSM	ENSMUSG00000044199.7	ENSMUST00000053646.7	2386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCGTTTCTCAGTGTAT	7363	False	NA	NA	False	ATTAAA	-17	NA	81335966	81333580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81333600_81336000
transcript_125412.known	chr7	+	809	5	FSM	ENSMUSG00000042289.12	ENSMUST00000136597.3	809	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	44.4655765733449	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACTGCGCTTTGGAGGTC	1951	False	NA	NA	False	NA	NA	NA	127399842	127401499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127399887_127400298_127400536_127400632_127400789_127401005_127401286_127401407
transcript_125415.known	chr7	+	1000	3	FSM	ENSMUSG00000042289.12	ENSMUST00000206995.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGCCACCAGGTCAATGG	1927	False	NA	NA	False	NA	NA	NA	127399818	127401395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127399887_127400246_127400789_127401005
transcript_125416.nic	chr7	+	2681	3	NIC	ENSMUSG00000042289.12	novel	2286	5	NA	NA	4	0	intron_retention	FALSE	canonical	3	91	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1920	False	NA	14	True	AATAAA	-15	NA	127399811	127402974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_127399887_127400246_127401286_127401407
transcript_125418.nic	chr7	+	2872	2	ISM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	-35	2	-35	-2	intron_retention	FALSE	canonical	3	91	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGTCTACCTTTTACC	1849	False	NA	12	True	AATAAA	-13	NA	127399740	127402972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_127399887_127400246
transcript_125421.known	chr7	+	1456	11	FSM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	24.7872951327893	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127440935	127448191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
transcript_125422.known	chr7	+	1316	10	FSM	ENSMUSG00000030805.15	ENSMUST00000121705.8	1316	10	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	22.9965107390847	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAGAAGAAGCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	127441139	127448172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740
transcript_125425.known	chr7	+	749	5	FSM	ENSMUSG00000030805.15	ENSMUST00000138399.8	749	5	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	16.6808273176123	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACATTTCTCATGTAG	NA	False	NA	NA	False	NA	NA	NA	127441141	127443116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743
transcript_12543.known	chr10	-	1962	7	FSM	ENSMUSG00000034792.9	ENSMUST00000043709.8	1962	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	27.6083723211315	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAGGGAACTGAGGAAG	5779	False	NA	NA	False	AATAAA	-18	NA	81360059	81338146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81338940_81343761_81343916_81345119_81345250_81347830_81347960_81348244_81348400_81350070_81350256_81359643
transcript_125432.known	chr7	-	3132	4	FSM	ENSMUSG00000049728.15	ENSMUST00000106263.8	3132	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	22.8958996814325	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGGTACCTCTGAGAAT	NA	False	NA	NA	False	NA	NA	NA	127475952	127464888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127466536_127466927_127467597_127473848_127473931_127475218
transcript_125436.known	chr7	+	6310	3	FSM	ENSMUSG00000049739.11	ENSMUST00000050383.8	6310	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	27	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTGGTGTGGTTATATC	1663	False	NA	20	True	AAAACA	-19	NA	127476872	127485168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127477280_127477741_127483091_127484614
transcript_125437.known	chr7	-	5768	3	FSM	ENSMUSG00000049728.15	ENSMUST00000054415.12	5768	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	4	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAAAACAC	NA	False	NA	NA	False	AATAAA	-41	NA	127476000	127462218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127466536_127466927_127467597_127475218
transcript_125439.known	chr7	-	748	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	18.5	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	False	NA	-11	True	AATAAA	-19	NA	127494789	127492234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127492664_127493676_127493787_127494580
transcript_125440.known	chr7	-	2410	3	FSM	ENSMUSG00000049728.15	ENSMUST00000106261.8	2410	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	25	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTCTTCTGTATTGTGGT	NA	False	NA	2	True	ATTAAA	-20	NA	127474818	127465164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127466536_127466927_127467597_127474448
transcript_125441.known	chr7	-	2134	11	FSM	ENSMUSG00000044139.13	ENSMUST00000121394.3	2134	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	0.806225774829855	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTTCTCTCTGATCTGC	NA	False	NA	NA	False	AGTAAA	-32	NA	127490142	127485012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127485454_127485699_127485917_127486121_127486268_127486348_127486591_127486670_127486822_127487466_127487687_127487817_127487973_127488105_127488372_127488650_127488814_127488908_127488930_127490030
transcript_125443.known	chr7	+	3405	12	FSM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_9	38.261820946588	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTAGTGCCTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	127503253	127509393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
transcript_12545.nnic	chr10	-	3099	3	NNC	ENSMUSG00000034792.9	novel	1046	2	NA	NA	-53	2038	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	38	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTAAGCACCTGTTATG	6367	False	NA	NA	False	AATAAA	-21	NA	81344060	81336101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_81336729_81336766_81338940_81343761
transcript_12546.known	chr10	-	1046	2	FSM	ENSMUSG00000034792.9	ENSMUST00000147908.2	1046	2	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	0	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACTGAGGAAGAGAGAAA	6420	False	NA	NA	False	AATAAA	-25	NA	81344007	81338139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81338940_81343761
transcript_125463.nnic	chr7	+	1437	12	NNC	ENSMUSG00000030801.11	novel	1579	11	NA	NA	0	-78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	91.4521958852351	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACTTTGGAGGTACGCAG	NA	False	NA	14	True	AGTAAA	-15	NA	127511687	127524931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_127511755_127511818_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
transcript_125464.known	chr7	+	1579	11	FSM	ENSMUSG00000030801.11	ENSMUST00000033070.9	1579	11	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	15.0053323855222	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGATTCCTCGCTCCTTT	NA	False	NA	92	True	NA	NA	NA	127511687	127525009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
transcript_125466.known	chr7	-	1709	7	FSM	ENSMUSG00000030800.11	ENSMUST00000206124.2	1709	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	11.3932241071417	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969_127529086_127529228
transcript_125470.known	chr7	-	1852	6	FSM	ENSMUSG00000030800.11	ENSMUST00000032988.10	1852	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.78567765543682	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969
transcript_125479.known	chr7	-	1132	6	FSM	ENSMUSG00000070371.12	ENSMUST00000156152.3	1132	6	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_5	34.92506263416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAATGTGGCTCAACC	NA	False	NA	NA	False	NA	NA	NA	127534622	127531970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534574
transcript_125491.known	chr7	-	1016	5	FSM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	32.1820990614348	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534651	127531809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533681_127533800_127534618
transcript_125492.known	chr7	-	1052	5	FSM	ENSMUSG00000070371.12	ENSMUST00000152697.3	1052	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	39.2778563569857	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534691	127531809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127532287_127532542_127532665_127533310_127533453_127533561_127533800_127534618
transcript_125493.known	chr7	+	5536	15	FSM	ENSMUSG00000030795.19	ENSMUST00000106251.10	5536	15	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_3	208.17746550205	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGACTGCCCATGAGCTC	1150	False	NA	NA	False	NA	NA	NA	127566628	127584873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
transcript_125496.known	chr7	+	1831	15	FSM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	273.376618440941	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1183	False	NA	37	True	ATTAAA	-20	NA	127566661	127581204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
transcript_12550.known	chr10	-	3414	7	FSM	ENSMUSG00000034781.6	ENSMUST00000043604.6	3414	7	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_6	26.2339898266013	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTTTGTGATTATTAGT	4223	False	NA	0	True	AATAAA	-19	NA	81381024	81364557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81366820_81366925_81367080_81367155_81367286_81368229_81368359_81369085_81369241_81370913_81371099_81380625
transcript_125500.known	chr7	+	4909	13	FSM	ENSMUSG00000030795.19	ENSMUST00000128851.8	4909	13	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	294.416324653071	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTGTTTCCCCCAGTT	1184	False	NA	34	True	ATTAAA	-17	NA	127566662	127581201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
transcript_125508.known	chr7	+	2374	6	FSM	ENSMUSG00000030795.19	ENSMUST00000174196.8	2374	6	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_3	88.8603398598047	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAAAAACCAACCC	1184	False	NA	NA	False	NA	NA	NA	127566662	127573499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725
transcript_125514.known	chr7	+	1102	9	FSM	ENSMUSG00000030795.19	ENSMUST00000121616.9	1102	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	421.89955484096	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1201	False	NA	37	True	ATTAAA	-20	NA	127566679	127581204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571456_127579366_127579419_127580362_127580464_127580582_127580728_127580962
transcript_125516.known	chr7	-	3800	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	0	0	0	0	multi-exon	FALSE	canonical	3	1219	junction_2	45	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACATTTTTGCCTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	127593039	127588879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127592138_127592286_127592344_127592554
transcript_125517.known	chr7	-	680	3	FSM	ENSMUSG00000030785.9	ENSMUST00000033049.9	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	3.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTCTTGTGTTAGTTCT	5383	False	NA	NA	False	AATACA	-20	NA	127805559	127804606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127804985_127805071_127805209_127805394
transcript_125525.known	chr7	-	3574	1	FSM	ENSMUSG00000062944.5	ENSMUST00000078816.5	3574	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTCTGTTTATGCTGCT	5273	False	NA	NA	False	AATAAA	-14	NA	127837203	127833629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127833600_127837200
transcript_125526.known	chr7	+	3834	6	FSM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	5.30659966456864	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGGGGTCGTCTG	NA	False	NA	10	True	ATTAAA	-21	NA	127836528	127844272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127837762_127839053_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
transcript_125527.known	chr7	-	2627	13	FSM	ENSMUSG00000030780.16	ENSMUST00000033044.16	2627	13	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	13.6897670623799	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGCTTCATACTGCAGGC	1106	False	NA	-16	True	AGTAAA	-16	NA	127897342	127870550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873876_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
transcript_125531.known	chr7	+	2277	14	FSM	ENSMUSG00000030781.14	ENSMUST00000118169.8	2277	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.48546068021592	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTTGTGGCTGAAACAT	NA	False	NA	NA	False	AATAAA	-16	NA	127864847	127871602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_127864989_127865516_127865589_127865664_127865770_127866508_127866674_127867084_127867191_127867903_127867985_127868124_127868355_127869100_127869237_127869451_127869560_127869691_127869843_127869955_127870125_127870206_127870423_127870920_127871051_127871135
transcript_125532.known	chr7	-	1625	13	FSM	ENSMUSG00000030780.16	ENSMUST00000126263.8	1625	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.7953582693364	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGGGAACCGGTTCCT	1181	False	NA	-35	True	NA	NA	NA	127897267	127871497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873896_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
transcript_125533.known	chr7	-	880	5	FSM	ENSMUSG00000030844.12	ENSMUST00000033133.12	880	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	4.32290411644765	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTAGTCATTTCTACTT	NA	False	NA	NA	False	ATTAAA	-24	NA	128019897	127975344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127975767_127990687_127990832_128004893_128004981_128006082_128006202_128019789
transcript_125535.known	chr7	-	458	3	FSM	ENSMUSG00000030844.12	ENSMUST00000134144.2	458	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCCAGCGAAGGAGAGGG	9751	False	NA	NA	False	NA	NA	NA	127995409	127975608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_127975767_127990687_127990832_127995253
transcript_125541.known	chr7	-	2319	13	FSM	ENSMUSG00000030846.16	ENSMUST00000123666.8	2319	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	77.5911650182473	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063441	128044003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128048454_128048832_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
transcript_125544.known	chr7	-	2835	13	FSM	ENSMUSG00000030846.16	ENSMUST00000106228.8	2835	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	81.5772895275803	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGGGTTGCTATAAGT	NA	False	NA	NA	False	ATTAAA	-14	NA	128063397	128043126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128060320_128060381_128062848
transcript_125548.known	chr7	-	1580	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063079	128044003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
transcript_125549.known	chr7	-	4451	12	FSM	ENSMUSG00000030846.16	ENSMUST00000106226.9	4451	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_10	64.264304450031	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTTTCTCTTAGTGTTG	NA	False	NA	-6	True	AATAAA	-16	NA	128063396	128041500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050495_128056659_128056757_128062848
transcript_125552.known	chr7	-	4266	11	FSM	ENSMUSG00000030846.16	ENSMUST00000141079.8	4266	11	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_6	28.929051142407	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAAAATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	128063376	128041948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_128044384_128045530_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
transcript_125555.known	chr7	-	2003	13	FSM	ENSMUSG00000030846.16	ENSMUST00000165023.8	2003	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	66.4515278647192	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGCTTTTACATGG	NA	False	NA	NA	False	ATTAAA	-12	NA	128063047	128043518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848_128062903_128062932
transcript_125556.known	chr7	+	2562	4	FSM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_2	8.2192186706253	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTTGTGGTTTCTAA	7142	False	NA	17	True	AATAAA	-22	NA	128125339	128148705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_128125769_128141696_128142036_128143530_128143933_128147313
transcript_125557.known	chr7	+	4734	20	FSM	ENSMUSG00000042105.19	ENSMUST00000043138.13	4734	20	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_6	8.64088073894081	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATGCTGTAGCCTTTTT	7176	False	NA	NA	False	ATTAAA	-3	NA	128213083	128298149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137_128270318_128271654_128271723_128277021_128277147_128278452_128278531_128279720_128279842_128281440_128281570_128283971_128284090_128286809_128287009_128292350_128292423_128293475_128293550_128293977_128294107_128295368_128295457_128295899
transcript_125562.nic	chr7	+	757	4	ISM	ENSMUSG00000042105.19	ENSMUST00000098007.11	1906	10	-46	7856	-46	-4805	5prime_fragment	TRUE	canonical	3	55	junction_3	6.16441400296898	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGACTTTGATTGACGTG	7098	False	NA	NA	False	AAAAAG	-4	NA	128213005	128265490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361
transcript_125565.known	chr7	-	4237	16	FSM	ENSMUSG00000048170.15	ENSMUST00000057557.14	4237	16	0	0	0	0	multi-exon	TRUE	canonical	3	440	junction_10	48.8278608992858	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTACAGCATTCAGTTTTT	3862	False	NA	NA	False	NA	NA	NA	128342219	128298164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_128300295_128301042_128301132_128303966_128304132_128305218_128305353_128306202_128306369_128308771_128308890_128310805_128310930_128311505_128311685_128314387_128314489_128316122_128316275_128317669_128317815_128322288_128322391_128325659_128325702_128325791_128325933_128326836_128326923_128341856
transcript_125580.nnic	chr7	+	4334	20	NNC	ENSMUSG00000055319.9	novel	4505	19	NA	NA	-37	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	34.6985434804919	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTCTCTCCCTGTTTC	1894	False	NA	23	True	AATAAA	-35	NA	128346629	128386560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151_128385885_128386092
transcript_125582.known	chr7	+	4505	19	FSM	ENSMUSG00000055319.9	ENSMUST00000042942.10	4505	19	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_10	14.275615919341	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTCTCTCCCTGTTTC	1931	False	NA	23	True	AATAAA	-35	NA	128346666	128386560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151
transcript_125590.known	chr7	+	4550	29	FSM	ENSMUSG00000042055.14	ENSMUST00000084519.7	4550	29	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_20	18.5519128228804	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTGTTTGAGTCTCTT	NA	False	NA	6	True	AATAAA	-19	NA	129193586	129237462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226428_129226544_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234433_129234580_129235373_129235454_129236541
transcript_125601.nic	chr7	+	2757	20	ISM	ENSMUSG00000042055.14	ENSMUST00000084519.7	4550	29	-21	7625	-21	2473	5prime_fragment	FALSE	canonical	3	127	junction_9	16.0109034870276	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTACTTCATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	129193565	129229837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226428_129226544_129226879_129227052_129229728
transcript_125609.known	chr7	-	3323	18	FSM	ENSMUSG00000030849.19	ENSMUST00000122054.8	3323	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	5.16643412059917	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGTATGCTGGCTGTG	NA	False	NA	NA	False	NA	NA	NA	129867921	129765438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_129765854_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797901_129798105_129800148_129800294_129802712_129802904_129820727_129820852_129830352_129830523_129842929_129843008_129844107_129844375_129863478_129863797_129867523
transcript_125612.known	chr7	-	4223	16	FSM	ENSMUSG00000030849.19	ENSMUST00000117872.8	4223	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	4.75347825866024	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTACAGATATTAATG	NA	False	NA	NA	False	AATAAA	-31	NA	129867975	129764241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_129765854_129769432_129769539_129771468_129771607_129773341_129773413_129774546_129774670_129779404_129779596_129782094_129782206_129784370_129784493_129786958_129787111_129797907_129798105_129800148_129800294_129802712_129802904_129820727_129820852_129830352_129830523_129863478_129863797_129867523
transcript_125614.known	chr7	-	1680	13	FSM	ENSMUSG00000030850.18	ENSMUST00000216011.2	1680	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	69.1801191737112	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTGCACCTCAGCCCAG	NA	False	NA	NA	False	NA	NA	NA	130121191	129996287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
transcript_125615.known	chr7	-	4685	12	FSM	ENSMUSG00000030850.18	ENSMUST00000035458.15	4685	12	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	43.8843333177548	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCGGCCGTGGTTCT	NA	False	NA	-15	True	AATAAA	-16	NA	130121260	129993222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
transcript_125616.known	chr7	-	1530	12	FSM	ENSMUSG00000030850.18	ENSMUST00000178534.8	1530	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	65.693629010445	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTGCACCTCAGCCCAG	NA	False	NA	NA	False	NA	NA	NA	130121691	129996287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121606
transcript_125617.known	chr7	-	4735	12	FSM	ENSMUSG00000030850.18	ENSMUST00000033139.15	4735	12	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_5	49.9651117950737	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCGGCCGTGGTTCT	NA	False	NA	-15	True	AATAAA	-16	NA	130121310	129993222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
transcript_125618.known	chr7	-	1938	12	FSM	ENSMUSG00000030850.18	ENSMUST00000094017.5	1938	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	68.2405807383271	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTGCACCTCAGCCCAG	NA	False	NA	NA	False	NA	NA	NA	130122099	129996287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121606
transcript_125627.known	chr7	-	1435	11	FSM	ENSMUSG00000040331.17	ENSMUST00000160289.9	1435	11	0	0	0	0	multi-exon	FALSE	canonical	3	1333	junction_1	62.2636330453018	791	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACGTGATCGTTTTTATTG	NA	False	NA	-7	True	ATTAAA	-22	NA	130149111	130134255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_130134423_130135306_130135397_130135499_130135592_130137253_130137303_130138712_130138808_130139891_130139983_130140740_130140841_130141543_130141696_130144409_130144541_130147624_130147703_130148721
transcript_125661.nic	chr7	+	4002	17	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-55	0	intron_retention	FALSE	canonical	3	154	junction_1	59.7013400184619	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGCATGTTTCAAATAAA	NA	False	NA	-31	True	NA	NA	NA	130247603	130366454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_130248161_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
transcript_125662.nic	chr7	+	4062	17	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-55	0	intron_retention	FALSE	canonical	3	154	junction_1	59.7013400184619	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGTGTGGCTGTGAGTT	NA	False	NA	29	True	AATAAA	-41	NA	130247603	130366514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_130248161_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
transcript_125670.known	chr7	+	3310	16	FSM	ENSMUSG00000030852.19	ENSMUST00000209108.2	3310	16	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_15	96.4575669515991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCATTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	130247972	130363179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130362905
transcript_125671.nic	chr7	+	3895	16	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-74	0	intron_retention	FALSE	canonical	3	48	junction_1	73.3327272702229	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGCATGTTTCAAATAAA	NA	False	NA	-31	True	NA	NA	NA	130247584	130366454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
transcript_125672.nic	chr7	+	3955	16	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-74	0	intron_retention	FALSE	canonical	3	48	junction_1	73.3327272702229	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGTGTGGCTGTGAGTT	NA	False	NA	29	True	AATAAA	-41	NA	130247584	130366514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
transcript_125691.known	chr7	+	3464	15	FSM	ENSMUSG00000030852.19	ENSMUST00000207282.2	3464	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	76.8787808096324	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGTGTGGCTGTGAGTT	NA	False	NA	29	True	AATAAA	-41	NA	130294494	130366514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130294718_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
transcript_125704.known	chr7	+	2248	1	FSM	ENSMUSG00000030852.19	ENSMUST00000208661.2	2248	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	130294332	130296580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130294300_130296600
transcript_125705.known	chr7	+	3492	16	FSM	ENSMUSG00000030852.19	ENSMUST00000207549.2	3492	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	100.624626983436	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAAAGAAT	NA	False	NA	-47	True	NA	NA	NA	130247959	130366438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335247_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
transcript_125715.known	chr7	+	2301	13	FSM	ENSMUSG00000040268.18	ENSMUST00000075181.11	2301	13	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	52.7225441975884	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGGTGGAAGACCTCAGTT	NA	False	NA	NA	False	AATAGA	-19	NA	130467627	130513798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511359_130512561
transcript_125721.known	chr7	+	3777	13	FSM	ENSMUSG00000040268.18	ENSMUST00000120441.8	3777	13	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_12	62.5128320160482	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCCCTTTTATTTGGTTC	NA	False	NA	23	True	AATAAA	-25	NA	130467485	130515042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130467714_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511466_130512561
transcript_125735.known	chr7	+	2941	5	FSM	ENSMUSG00000040268.18	ENSMUST00000148513.2	2941	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	73.9831061797219	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAGAAAAGAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	130467614	130496471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910
transcript_125737.known	chr7	+	2041	9	FSM	ENSMUSG00000006205.14	ENSMUST00000006367.8	2041	9	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	16.015617378047	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGCGTGCTTCTTTTAT	6622	False	NA	19	True	ATTAAA	-20	NA	130537932	130587390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130538474_130563242_130563343_130563702_130563908_130581030_130581226_130581681_130581715_130583386_130583502_130583966_130584025_130585389_130585486_130586692
transcript_125740.known	chr7	-	6773	6	FSM	ENSMUSG00000040177.11	ENSMUST00000059438.11	6773	6	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	3.61109401705356	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCTGTTTTCAGTAATAAA	NA	False	NA	NA	False	AATAAA	-15	NA	130964488	130939948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_130945534_130952379_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
transcript_125746.nic	chr7	-	3310	5	ISM	ENSMUSG00000040177.11	ENSMUST00000208526.2	3703	6	-14	5294	0	2449	5prime_fragment	FALSE	canonical	3	85	junction_4	3.96074487943871	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACAGAACACACAGCTTA	NA	False	NA	NA	False	NA	NA	NA	130964439	130950208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
transcript_125751.known	chr7	+	1135	6	FSM	ENSMUSG00000063179.14	ENSMUST00000075610.13	1135	6	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	32.2713495224479	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972869	130989568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130989346
transcript_125755.nic	chr7	+	846	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	59.6547357717726	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972863	130989568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130989346
transcript_125759.known	chr7	-	4430	4	FSM	ENSMUSG00000040167.17	ENSMUST00000046306.15	4430	4	0	0	0	0	multi-exon	TRUE	canonical	3	63	junction_1	6.97614984548545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTTGTTTTTTTTTTA	NA	False	NA	-2	True	AATAAA	-17	NA	131012250	130990380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_130994310_130995483_130995667_130998397_130998581_131012115
transcript_125760.known	chr7	-	2231	4	FSM	ENSMUSG00000040167.17	ENSMUST00000121033.8	2231	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	34.7658836600865	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTGGTTTCTGTGTACC	NA	False	NA	NA	False	AATAAA	-13	NA	131012226	130992096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_130993851_130995483_130995667_130998397_130998581_131012115
transcript_125767.known	chr7	+	459	3	FSM	ENSMUSG00000063179.14	ENSMUST00000141914.3	459	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	78.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCATTGGAAAATCCCATAA	NA	False	NA	NA	False	NA	NA	NA	130972885	130985680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130973119_130975793_130975993_130985653
transcript_125768.known	chr7	+	675	1	FSM	ENSMUSG00000063179.14	ENSMUST00000207419.2	675	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGTTA	NA	False	NA	NA	False	AAGAAA	-10	NA	130972884	130973559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_130972900_130973600
transcript_125769.known	chr7	+	6081	11	FSM	ENSMUSG00000030861.16	ENSMUST00000015829.15	6081	11	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	19.6022957839127	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	131012329	131050673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_131012517_131026200_131026361_131027503_131027605_131030157_131030365_131031675_131031847_131033665_131033792_131035998_131036092_131039130_131039221_131042930_131043069_131045197_131045298_131045965
transcript_12577.known	chr10	+	1411	7	FSM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	0	0	0	0	multi-exon	FALSE	canonical	3	2772	junction_6	274.064925397858	1589	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTGTGTCCCTGCTTCT	57	False	NA	14	True	AATAAA	-16	NA	81395327	81402196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
transcript_125777.known	chr7	+	2128	9	FSM	ENSMUSG00000066979.7	ENSMUST00000207736.2	2128	9	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	579.695609781547	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTGTGTTACCTTGG	NA	False	NA	11	True	ATTAAA	-20	NA	131162108	131173624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131164026_131164092_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
transcript_125789.known	chr7	+	2218	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCCAGGTGTGTTACCT	NA	False	NA	8	True	ATTAAA	-17	NA	131161950	131173621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
transcript_125795.known	chr7	+	832	2	FSM	ENSMUSG00000066979.7	ENSMUST00000208848.2	832	2	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	131162119	131163206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_131162184_131162438
transcript_125797.known	chr7	-	3498	14	FSM	ENSMUSG00000030862.14	ENSMUST00000033149.5	3498	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	1.10940039245046	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCATGTAGTTTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	131756468	131644544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_131645876_131649443_131649544_131650717_131650858_131656459_131656758_131659362_131659543_131661462_131661660_131663795_131663920_131672545_131672635_131680501_131680653_131681765_131681851_131708011_131708152_131730080_131730191_131745396_131745496_131756014
transcript_125798.known	chr7	-	4813	8	FSM	ENSMUSG00000030930.15	ENSMUST00000080215.6	4813	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.67819144635296	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGGCCAGTTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	131918957	131837508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_131840194_131843145_131843294_131849592_131849750_131864411_131864569_131868385_131868533_131870647_131870988_131871733_131872731_131918775
transcript_125800.known	chr7	-	2152	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGATGTGAATCTATTTA	NA	False	NA	-5	True	AATAAA	-24	NA	132178127	132159206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
transcript_125809.nnic	chr7	-	3416	3	NNC	ENSMUSG00000048528.8	novel	3264	2	NA	NA	-227	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTTGACGAATTATTC	NA	False	NA	NA	False	AATAAA	-15	NA	132201593	132196608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_132198239_132198311_132199546_132201041
transcript_125811.known	chr7	-	3264	2	FSM	ENSMUSG00000048528.8	ENSMUST00000054562.4	3264	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTGACGAATTATTCAT	NA	False	NA	NA	False	AATAAA	-17	NA	132201366	132196606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132199546_132201041
transcript_125814.nnic	chr7	+	2401	8	NNC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	-14	999	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	111.943681175411	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAAACAGAAGAGTGGGTT	NA	False	NA	NA	False	AAGAAA	-9	NA	132212352	132309148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320_132308288_132308512
transcript_125816.known	chr7	+	1612	7	FSM	ENSMUSG00000030946.14	ENSMUST00000033241.6	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	19.9979165581484	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCAGCCTTTCTTA	NA	False	NA	12	True	AATAAA	-20	NA	132212367	132308149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320
transcript_125818.nic	chr7	+	1532	6	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	-14	0	combination_of_known_junctions	TRUE	canonical	2	20	junction_5	121.921942241747	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTGACTCAGCCTTTC	NA	False	NA	9	True	AATAAA	-17	NA	132212352	132308146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132307320
transcript_125820.nnic	chr7	+	1277	5	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	131.685942681822	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTGACTCAGCCTTTC	NA	False	NA	9	True	AATAAA	-17	NA	132212357	132308146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_132212560_132243252_132243317_132244215_132244309_132251986_132252079_132307320
transcript_125828.known	chr7	-	5465	5	FSM	ENSMUSG00000030956.16	ENSMUST00000097999.9	5465	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	41.3430768085782	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGCCTGCGCATGGCTG	NA	False	NA	-12	True	AATAAA	-19	NA	132415257	132313810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132414794
transcript_125829.nic	chr7	-	5306	5	NIC	ENSMUSG00000030956.16	novel	5052	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_4	27.206387117734	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCCTGCGCATGGC	NA	False	NA	-14	True	AATAAA	-17	NA	132415615	132313812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132415309
transcript_125830.nic	chr7	-	5126	5	NIC	ENSMUSG00000030956.16	novel	5052	5	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	38.4537059332387	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCCTGCGCATGGC	NA	False	NA	-14	True	AATAAA	-17	NA	132415617	132313812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132415491
transcript_125832.nic	chr7	-	3168	5	NIC	ENSMUSG00000030956.16	novel	5465	5	NA	NA	23	-834	combination_of_known_junctions	FALSE	canonical	3	62	junction_4	27.206387117734	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTGTTTCAACTTTAAT	NA	False	NA	NA	False	AAGAAA	-15	NA	132415592	132315927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132415309
transcript_125837.known	chr7	-	3630	4	FSM	ENSMUSG00000030956.16	ENSMUST00000106168.2	3630	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	51.1490197581754	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGTCAGCTTTCAGCAG	NA	False	NA	NA	False	AGTAAA	-21	NA	132378645	132315093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132317732_132361117_132361897_132373306_132373359_132378484
transcript_125841.nic	chr7	-	4670	4	NIC	ENSMUSG00000030956.16	novel	4341	4	NA	NA	-147	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	49.9355139710763	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	NA	False	NA	-18	True	AATAAA	-13	NA	132415762	132313816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_132317732_132373306_132373359_132380864_132381115_132415309
transcript_125842.known	chr7	-	4341	4	FSM	ENSMUSG00000030956.16	ENSMUST00000097998.9	4341	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	53.4852004452322	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCGGCTGCCTGCGCA	NA	False	NA	-18	True	AATAAA	-13	NA	132415615	132313816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132317732_132373306_132373359_132380864_132381115_132415491
transcript_125846.known	chr7	-	1232	4	FSM	ENSMUSG00000030956.16	ENSMUST00000106165.8	1232	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	47.005909793935	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132414824	132360996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132361897_132373306_132373359_132380864_132381115_132414794
transcript_125847.known	chr7	-	516	4	FSM	ENSMUSG00000030956.16	ENSMUST00000134946.3	516	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	31.3155978174881	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGGAATGTCTGCCTGA	NA	False	NA	NA	False	NA	NA	NA	132415458	132361831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132361897_132373306_132373359_132380864_132381115_132415309
transcript_125860.known	chr7	-	1107	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTTGGTTTTTGTGC	NA	False	NA	NA	False	AGTAAA	-18	NA	132454402	132429185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
transcript_125864.nic	chr7	-	896	5	NIC	ENSMUSG00000030960.17	novel	1107	6	NA	NA	-9	-3	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	142.065785817698	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTGTTTTTGGTTTTTG	NA	False	NA	NA	False	AGTAAA	-15	NA	132454411	132429188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_132429612_132438828_132438937_132452323_132452439_132453154_132453221_132454227
transcript_125865.known	chr7	-	811	3	FSM	ENSMUSG00000030960.17	ENSMUST00000154914.2	811	3	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	20.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATAGTCTTGAAAGAGTAA	NA	False	NA	NA	False	CATAAA	-11	NA	132454368	132451834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132452439_132453154_132453221_132454227
transcript_125869.nnic	chr7	+	2961	11	NNC	ENSMUSG00000030967.16	novel	5008	10	NA	NA	10	193	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	39.6359685134601	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	132532880	132585918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_132533275_132549772_132549938_132551313_132552165_132568235_132568424_132572914_132573069_132574418_132574491_132575153_132575353_132583009_132583131_132584099_132584230_132584411_132584642_132585461
transcript_125874.known	chr7	+	5008	10	FSM	ENSMUSG00000030967.16	ENSMUST00000106157.8	5008	10	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	22.7129157795708	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGATTCAGATCTGACT	NA	False	NA	4	True	ATTAAA	-16	NA	132532870	132588120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_132533275_132551313_132552165_132568235_132568424_132572914_132573069_132574418_132574491_132575153_132575353_132583009_132583131_132584099_132584230_132584411_132584642_132585461
transcript_125881.known	chr7	+	2892	9	FSM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_8	19.6273883896967	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATATTTTAGTGTCTGT	NA	False	NA	16	True	AATAAA	-18	NA	132460953	132486840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
transcript_125883.known	chr7	+	2827	9	FSM	ENSMUSG00000030965.20	ENSMUST00000129552.2	2827	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	67.4532245337464	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATACGATATTTTAGTGTC	NA	False	NA	13	True	AATAAA	-15	NA	132460977	132486837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478364_132478447_132480257_132480343_132482495_132482611_132484763
transcript_125889.known	chr7	+	1224	8	FSM	ENSMUSG00000030965.20	ENSMUST00000106161.8	1224	8	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	17.0185972706691	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTATCCTATACGTTGT	NA	False	NA	NA	False	NA	NA	NA	132460972	132483038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495
transcript_125894.known	chr7	+	2620	5	FSM	ENSMUSG00000030965.20	ENSMUST00000144225.9	2620	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	16.5075740192192	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGATAAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	132460977	132478895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555
transcript_125897.known	chr7	+	1778	1	FSM	ENSMUSG00000030965.20	ENSMUST00000210077.2	1778	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132460963	132462741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_132461000_132462700
transcript_125909.nic	chr7	-	2755	12	NIC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	-209	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_11	251.022010164003	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAGAACAAAAGAAAAA	NA	False	NA	43	True	NA	NA	NA	132725794	132589312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724869_132725086_132725386
transcript_12591.known	chr10	-	1961	14	FSM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_8	19.8357158000858	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	-14	True	NA	NA	NA	81436709	81426737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
transcript_125918.known	chr7	-	2321	11	FSM	ENSMUSG00000030970.17	ENSMUST00000033269.15	2321	11	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_8	136.177861636905	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	6	True	AGTAAA	-13	NA	132725096	132589349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724869
transcript_12593.nnic	chr10	-	2109	14	NNC	ENSMUSG00000034758.13	novel	2015	14	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	21.9426363489173	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGATTTGTCCTTTACC	NA	False	NA	-17	True	NA	NA	NA	81436725	81426740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436526
transcript_125930.nnic	chr7	-	2312	11	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	-147	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_10	265.033658239855	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAGAACAAAAGAAAAA	NA	False	NA	43	True	NA	NA	NA	132724491	132589312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724310
transcript_12594.known	chr10	-	2015	14	FSM	ENSMUSG00000034758.13	ENSMUST00000072020.9	2015	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	15.2183321404185	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTGTCCTTTACCCA	NA	False	NA	-15	True	NA	NA	NA	81436734	81426738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
transcript_125944.known	chr7	-	1997	10	FSM	ENSMUSG00000030970.17	ENSMUST00000166439.8	1997	10	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_8	235.790763073148	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAGAACAAAAGAAAAA	NA	False	NA	43	True	NA	NA	NA	132724895	132589312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132683485_132683590_132724869
transcript_125967.known	chr7	+	5424	25	FSM	ENSMUSG00000039990.17	ENSMUST00000051169.13	5424	25	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_10	22.9037463577953	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTGTAATTACTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	133239271	133274700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133248718_133248821_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273094
transcript_125969.known	chr7	+	4380	24	FSM	ENSMUSG00000039990.17	ENSMUST00000128901.9	4380	24	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_6	37.3605535837356	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTGGTAGTTCCCACTT	NA	False	NA	6	True	AATAAA	-19	NA	133239421	133273908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273094
transcript_125972.known	chr7	+	2004	11	FSM	ENSMUSG00000053111.14	ENSMUST00000065359.12	2004	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.56904651573303	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACAGGAGTGGACTCTTA	NA	False	NA	NA	False	AATAAA	-16	NA	133378589	133483261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_133378700_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
transcript_125989.known	chr7	-	2955	12	FSM	ENSMUSG00000030986.14	ENSMUST00000033290.12	2955	12	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_11	48.5725154403017	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCAATGGGTTTCTTG	NA	False	NA	-9	True	AATAAA	-19	NA	133378532	133322670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133378330
transcript_125990.known	chr7	-	2644	12	FSM	ENSMUSG00000030986.14	ENSMUST00000063669.8	2644	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_11	113.27630229292	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTACTATTCCATGCT	NA	False	NA	-7	True	AATAAA	-22	NA	133384455	133322838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133384396
transcript_126.known	SIRV4	-	626	2	FSM	SIRV4A	SIRV405	626	2	0	0	0	0	multi-exon	FALSE	canonical	3	7498	junction_1	0	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTCTCTTTTCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	13937	8629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4_-_8991_13672
transcript_126016.known	chr7	-	2233	11	FSM	ENSMUSG00000030986.14	ENSMUST00000106139.8	2233	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	118.743589300644	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAGAAAAAAATCAT	NA	False	NA	55	True	NA	NA	NA	133378430	133322776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133378330
transcript_126029.known	chr7	-	1644	10	FSM	ENSMUSG00000030979.14	ENSMUST00000106145.10	1644	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	18.4477908610847	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCTGAGTATGGTAGC	NA	False	NA	NA	False	NA	NA	NA	133310798	133288084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310652
transcript_12603.nic	chr10	-	1793	11	NIC	ENSMUSG00000034758.13	novel	1972	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_10	15.7445228571716	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGATTTGTCCTTTACC	NA	False	NA	-17	True	NA	NA	NA	81433201	81426740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81433129
transcript_126030.known	chr7	-	1762	10	FSM	ENSMUSG00000030979.14	ENSMUST00000033276.11	1762	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	13.5163367087644	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATAGGACTGATCTGAG	NA	False	NA	NA	False	NA	NA	NA	133311010	133288093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
transcript_126036.known	chr7	-	2189	9	FSM	ENSMUSG00000030979.14	ENSMUST00000135760.8	2189	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_8	13.9821314541096	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133310823	133287971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_133288846_133291310_133291410_133292236_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
transcript_126041.known	chr7	+	1244	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	0	0	0	0	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	1644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAAGTGTTCATGTCC	1307	False	NA	23	True	AATAAA	-24	NA	133311061	133322874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
transcript_126049.known	chr7	+	253	2	FSM	ENSMUSG00000030983.5	ENSMUST00000132885.2	253	2	0	0	0	0	multi-exon	FALSE	canonical	3	1578	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTCCTTTCCCAGGTGA	1376	False	NA	NA	False	NA	NA	NA	133311130	133316042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_133311258_133315916
transcript_126052.known	chr7	+	6807	52	FSM	ENSMUSG00000058325.7	ENSMUST00000084488.5	6807	52	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_42	17.5348283073368	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGGACTCCTGGTGGCT	NA	False	NA	2	True	AATAAA	-9	NA	134272415	134775368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475_134384577_134390879_134391015_134406270_134406380_134449870_134449942_134453225_134453333_134475786_134475915_134477948_134478045_134592250_134592353_134600952_134601048_134678863_134678943_134683546_134683648_134693102_134693162_134700461_134700611_134710163_134710250_134710434_134710592_134715576_134715618_134717018_134717110_134720636_134720757_134734717_134734808_134735587_134735693_134739543_134739686_134739806_134739886_134742035_134742121_134745484_134745572_134747142_134747320_134748168_134748253_134753937_134754076_134760189_134760336_134765006_134765206_134768828_134768983_134770091_134770244_134774175
transcript_126054.nic	chr7	+	4494	43	ISM	ENSMUSG00000058325.7	ENSMUST00000084488.5	6807	52	-47	33278	-14	-33278	5prime_fragment	FALSE	canonical	3	98	junction_42	18.0855237082163	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAGAGAAAAACCCAGACAA	NA	False	NA	NA	False	NA	NA	NA	134272368	134742090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475_134384577_134390879_134391015_134406270_134406380_134449870_134449942_134453225_134453333_134475786_134475915_134477948_134478045_134592250_134592353_134600952_134601048_134678863_134678943_134683546_134683648_134693102_134693162_134700461_134700611_134710163_134710250_134710434_134710592_134715576_134715618_134717018_134717110_134720636_134720757_134734717_134734808_134735587_134735693_134739543_134739686_134739806_134739886_134742035
transcript_126057.nic	chr7	+	3771	35	ISM	ENSMUSG00000058325.7	ENSMUST00000084488.5	6807	52	-47	64777	-14	-64777	5prime_fragment	FALSE	canonical	3	101	junction_11	18.9351698550461	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGCGAAACCTTAATTAA	NA	False	NA	NA	False	AAAACA	-36	NA	134272368	134710591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475_134384577_134390879_134391015_134406270_134406380_134449870_134449942_134453225_134453333_134475786_134475915_134477948_134478045_134592250_134592353_134600952_134601048_134678863_134678943_134683546_134683648_134693102_134693162_134700461_134700611_134710163_134710250_134710434
transcript_126061.known	chr7	+	3557	27	FSM	ENSMUSG00000058325.7	ENSMUST00000211570.2	3557	27	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_11	21.2171430631769	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAGAGAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	134272382	134478672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475_134384577_134390879_134391015_134406270_134406380_134449870_134449942_134453225_134453333_134475786_134475915_134477948
transcript_126066.known	chr7	+	2589	21	FSM	ENSMUSG00000058325.7	ENSMUST00000211593.2	2589	21	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_11	23.1652217774836	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTTTCTGTTTTGA	NA	False	NA	7	True	NA	NA	NA	134272415	134384915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475
transcript_126069.nic	chr7	-	3735	12	ISM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	-185	10192	-185	4660	5prime_fragment	FALSE	canonical	3	124	junction_7	16.2078442390107	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCAGCAAATCTCCACAC	NA	False	NA	NA	False	NA	NA	NA	135318275	135301704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
transcript_12607.known	chr10	-	1855	11	FSM	ENSMUSG00000034758.13	ENSMUST00000128278.8	1855	11	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_10	22.2937210891318	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	-14	True	NA	NA	NA	81433424	81426737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81433293
transcript_126072.nic	chr7	-	3475	12	ISM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	-280	10547	-280	4305	5prime_fragment	FALSE	canonical	3	124	junction_7	16.2078442390107	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGAACTAGAGTCCTTTG	NA	False	NA	NA	False	GATAAA	-13	NA	135318370	135302059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
transcript_126073.nic	chr7	-	3337	12	ISM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	-280	10685	-280	4167	5prime_fragment	FALSE	canonical	3	124	junction_7	16.2078442390107	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAACATAATAGTATATGC	NA	False	NA	NA	False	AAGAAA	-1	NA	135318370	135302197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
transcript_126076.nic	chr7	-	2996	12	ISM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	-280	11026	-280	3826	5prime_fragment	FALSE	canonical	3	124	junction_7	16.2078442390107	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGCAGTCCTTGCTGAG	NA	False	NA	NA	False	AATGAA	-5	NA	135318370	135302538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
transcript_126084.nic	chr7	-	2409	9	ISM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	-280	14556	-280	296	5prime_fragment	FALSE	canonical	3	124	junction_4	15.229494410518	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATATAGGGCTTCAGCCA	NA	False	NA	NA	False	NA	NA	NA	135318370	135306068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
transcript_126085.nic	chr7	-	2249	9	ISM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	-193	14629	-193	223	5prime_fragment	FALSE	canonical	3	124	junction_4	15.229494410518	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAACGAAAGTTGCGAAA	NA	False	NA	NA	False	NA	NA	NA	135318283	135306141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
transcript_126089.known	chr7	-	10061	14	FSM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_9	63.2390037685062	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGGCCTCTCTGACAA	NA	False	NA	-18	True	AATAAA	-19	NA	135318090	135291512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_135291863_135294808_135295226_135295960_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
transcript_126092.nnic	chr7	+	999	6	NNC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	-28	-2080	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	98.1150345258055	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGTGATGTGGCTGCCCTT	NA	False	NA	31	True	ATTAAA	-22	NA	136496314	136729915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_136496417_136521584_136521742_136552996_136553134_136687677_136687839_136723217_136723358_136729613
transcript_126093.known	chr7	+	2894	5	FSM	ENSMUSG00000054612.5	ENSMUST00000081510.4	2894	5	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_1	21.7887585695009	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAAGCTGTGTTCT	NA	False	NA	NA	False	AATAAA	-12	NA	136496342	136731995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_136496417_136552996_136553134_136687677_136687839_136723217_136723358_136729613
transcript_126096.known	chr7	-	699	5	FSM	ENSMUSG00000040139.15	ENSMUST00000117404.8	699	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	88.1373218336024	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	137012464	136977865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_136978081_136978683_136978847_136989099_136989163_136989268_136989431_137012368
transcript_126098.nnic	chr7	-	1068	5	NNC	ENSMUSG00000040139.15	novel	699	5	NA	NA	-283	37	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	92.2506775042872	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCAAATGGGACGAAGGAG	NA	False	NA	NA	False	AATAAA	-8	NA	137012774	136977828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_136978081_136978661_136978847_136989099_136989163_136989268_136989431_137012368
transcript_126100.known	chr7	-	1126	4	FSM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	38.0292285252044	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012491	136977302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_136978081_136989099_136989163_136989268_136989431_137012368
transcript_126102.known	chr7	-	895	2	FSM	ENSMUSG00000040139.15	ENSMUST00000145881.8	895	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012485	136977302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_136978081_137012368
transcript_126107.known	chr7	+	1685	11	FSM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	3	3305	junction_4	243.181434324251	1708	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTGTTCCAGTAAGCTT	NA	False	NA	NA	False	TTTAAA	-17	NA	137039342	137070323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
transcript_126124.known	chr7	+	2081	9	FSM	ENSMUSG00000041769.14	ENSMUST00000041097.13	2081	9	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_4	89.4111814875522	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448087	138484786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_138448245_138448340_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
transcript_126130.nic	chr7	+	1584	8	NIC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	1	-327	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	212.306863011144	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTAAGTCTGAGCC	NA	False	NA	21	True	AATAAA	-17	NA	138448088	138484456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_138448245_138448340_138448434_138470138_138470237_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
transcript_126131.nic	chr7	+	1932	8	NIC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	212.306863011144	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448070	138484786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_138448245_138448340_138448434_138470138_138470237_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
transcript_12614.nic	chr10	-	2229	8	NIC	ENSMUSG00000034748.17	novel	1891	8	NA	NA	11	0	intron_retention	FALSE	canonical	3	27	junction_7	72.5548349983146	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	9900	False	NA	-11	True	AATAAA	-25	NA	81463389	81457620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81462725
transcript_126149.nic	chr7	+	481	4	ISM	ENSMUSG00000041769.14	ENSMUST00000041097.13	2081	9	-20	13255	-20	0	5prime_fragment	FALSE	canonical	3	549	junction_1	18.3545331972483	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGTGGTTACCGCAAC	NA	False	NA	NA	False	AAGAAA	-11	NA	138448067	138471531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_138448245_138448340_138448434_138470138_138470237_138471418
transcript_126150.known	chr7	+	3823	3	FSM	ENSMUSG00000041769.14	ENSMUST00000128157.2	3823	3	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_1	7	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGGATGTAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	138447807	138473431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_138448245_138448340_138448434_138470138
transcript_126151.known	chr7	-	1502	2	FSM	ENSMUSG00000041775.8	ENSMUST00000075667.5	1502	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAACCAGTCAACTTGT	NA	False	NA	28	True	NA	NA	NA	138447989	138437561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_138438760_138447685
transcript_126152.known	chr7	-	1350	2	FSM	ENSMUSG00000041775.8	ENSMUST00000118810.2	1350	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACAGTTTAATTTAAG	NA	False	NA	-17	True	NA	NA	NA	138447986	138437606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_138438656_138447685
transcript_126153.known	chr7	-	1756	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCGCTGTACTGGCTAGT	NA	False	NA	NA	False	AGTAAA	-19	NA	138511235	138492564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
transcript_12616.known	chr10	-	1891	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_1	20.6723713873254	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	9658	False	NA	-11	True	AATAAA	-25	NA	81463631	81457620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
transcript_126161.known	chr7	+	3552	14	FSM	ENSMUSG00000025478.16	ENSMUST00000026551.15	3552	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	3.36181128975572	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGGCTGGCTGCTGTGC	NA	False	NA	NA	False	NA	NA	NA	138665916	138682620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_138666078_138669425_138669515_138670074_138670260_138671777_138671943_138673521_138673584_138673676_138673758_138674309_138674379_138674772_138674894_138676083_138676241_138676582_138676725_138677737_138677909_138678385_138678566_138679655_138679822_138680817
transcript_126167.nnic	chr7	+	2315	3	NNC	ENSMUSG00000060260.14	novel	3057	3	NA	NA	-343	26	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_2	29.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTCTGCTCCTTTGTCT	NA	False	NA	NA	False	AAAAAG	-21	NA	138828054	138847103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_138828560_138834685_138835780_138846387
transcript_126168.known	chr7	+	3057	3	FSM	ENSMUSG00000060260.14	ENSMUST00000093993.5	3057	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	5.5	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTGCTTCTCTCAACTT	NA	False	NA	NA	False	NA	NA	NA	138828397	138847891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_138828560_138834685_138836077_138846387
transcript_126170.known	chr7	+	2543	3	FSM	ENSMUSG00000060260.14	ENSMUST00000172136.9	2543	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	19.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAACAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	138828402	138847077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_138828560_138834685_138836382_138846387
transcript_126176.known	chr7	+	2774	16	FSM	ENSMUSG00000025477.15	ENSMUST00000026550.14	2774	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_15	41.2685513839938	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGCTTATTCTCC	NA	False	NA	19	True	AATAAA	-20	NA	138969025	139159568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_138969381_139033969_139034012_139057910_139058012_139061547_139061636_139091323_139091388_139096546_139096651_139103752_139103806_139105577_139105698_139118094_139118180_139138789_139138886_139138979_139139055_139147279_139147354_139154859_139154972_139157265_139157335_139158097_139158135_139158269
transcript_126177.known	chr7	+	2826	16	FSM	ENSMUSG00000025477.15	ENSMUST00000106098.8	2826	16	0	0	0	0	multi-exon	TRUE	canonical	3	132	junction_13	16.0850517216728	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGCTTATTCTCC	NA	False	NA	19	True	AATAAA	-20	NA	138969024	139159568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_138969381_139033969_139034012_139057910_139058012_139061547_139061636_139091323_139091388_139096546_139096651_139103752_139103806_139105577_139105698_139118094_139118180_139138789_139138886_139138979_139139055_139147279_139147354_139154859_139154972_139157265_139157335_139158097_139158186_139158269
transcript_126183.known	chr7	-	1907	4	FSM	ENSMUSG00000041309.18	ENSMUST00000097974.9	1907	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	33.9803864996658	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGCTCCGCAGGCGCCTT	NA	False	NA	-9	True	AATAAA	-20	NA	139162713	139159291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139159538_139160780_139161605_139161796_139161970_139162049
transcript_126186.known	chr7	-	1299	3	FSM	ENSMUSG00000041309.18	ENSMUST00000106095.3	1299	3	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	2	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGCACATCGTGTTTC	NA	False	NA	-8	True	AATAAA	-36	NA	139162706	139161135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139161605_139161796_139161970_139162049
transcript_126187.known	chr7	+	1227	2	FSM	ENSMUSG00000047751.10	ENSMUST00000168457.3	1227	2	0	0	0	0	multi-exon	FALSE	canonical	3	805	junction_1	0	879	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGAATGAATTCGGAC	NA	False	NA	NA	False	AATAAA	-20	NA	139523701	139525025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_139524343_139524439
transcript_126188.known	chr7	-	1161	7	FSM	ENSMUSG00000073795.12	ENSMUST00000097970.9	1161	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.06718737290547	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCCCTGGTATGTGCA	NA	False	NA	NA	False	NA	NA	NA	139558668	139552215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139552521_139555774_139555872_139555953_139556042_139556387_139556587_139556984_139557136_139557946_139558059_139558459
transcript_1262.known	chr1	+	3918	31	FSM	ENSMUSG00000026074.16	ENSMUST00000192509.6	3918	31	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	29.3285791601904	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATCAAGGCTGCATT	NA	False	NA	-16	True	NA	NA	NA	39940389	40064085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_39940447_39940668_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046691_40047490_40047500_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
transcript_126200.known	chr7	-	2960	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGCATTATTACTG	NA	False	NA	NA	False	NA	NA	NA	139616179	139575908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
transcript_126202.known	chr7	-	3060	18	FSM	ENSMUSG00000025474.10	ENSMUST00000211638.2	3060	18	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_17	64.0289186395126	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCCTGCGCAATGAGCT	NA	False	NA	NA	False	NA	NA	NA	139616582	139575960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
transcript_126212.known	chr7	-	3341	17	FSM	ENSMUSG00000025474.10	ENSMUST00000209930.2	3341	17	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_16	76.1033169037329	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGAGTTTCTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	139616242	139575880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
transcript_126234.known	chr7	-	2610	15	FSM	ENSMUSG00000025474.10	ENSMUST00000211186.2	2610	15	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_14	66.201801874485	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCGAGCAGTTGTGCAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	139616303	139578440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
transcript_126251.known	chr7	+	1076	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616324	139620515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
transcript_126259.known	chr7	+	1757	5	FSM	ENSMUSG00000025470.12	ENSMUST00000210882.2	1757	5	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	31.3318926973779	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616440	139620515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238
transcript_126274.known	chr7	-	2070	2	FSM	ENSMUSG00000025469.11	ENSMUST00000172775.4	2070	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGCATGGAATTGCCTAT	9989	False	NA	NA	False	AATAAA	-14	NA	139629001	139626286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139628054_139628698
transcript_126275.nic	chr7	-	874	2	ISM	ENSMUSG00000025468.16	ENSMUST00000211044.2	1029	6	11189	6	11189	0	3prime_fragment	FALSE	canonical	3	34	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGGGTCGTGGTTTCTC	9228	False	NA	-7	True	AGTAAA	-11	NA	139650951	139649799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_139649947_139650224
transcript_126279.nic	chr7	-	758	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	128.971934931597	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1910	False	NA	0	True	NA	NA	NA	139681915	139679382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
transcript_126281.nic	chr7	-	810	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	162.288138814887	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1572	False	NA	0	True	NA	NA	NA	139682253	139679382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681993
transcript_126283.known	chr7	-	685	6	FSM	ENSMUSG00000025466.20	ENSMUST00000026539.14	685	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	86.8506764510214	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1471	False	NA	0	True	NA	NA	NA	139682354	139679382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
transcript_126284.known	chr7	-	1685	6	FSM	ENSMUSG00000025466.20	ENSMUST00000148716.8	1685	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	178.471286205933	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCAGCATCTGCAGGTC	1506	False	NA	NA	False	AATAAA	-16	NA	139682319	139678423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139679620_139679715_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
transcript_126285.known	chr7	+	620	5	FSM	ENSMUSG00000025467.9	ENSMUST00000026540.9	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	1.08972473588517	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAATGCGTGTCTTTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	139673307	139677113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_139673382_139674944_139675012_139676062_139676116_139676586_139676694_139676794
transcript_126296.known	chr7	-	1557	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	1183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTTTTTAACT	NA	False	NA	-1	True	NA	NA	NA	139696389	139685622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
transcript_1263.known	chr1	+	1419	9	FSM	ENSMUSG00000026073.14	ENSMUST00000027243.13	1419	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.04633819296811	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACCCATGTGGTTTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	40123857	40164391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_40123980_40141548_40141698_40144423_40144683_40151114_40151296_40154183_40154359_40157114_40157178_40160068_40160205_40162281_40162425_40164200
transcript_126301.known	chr7	+	4655	7	FSM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	25.7552583627758	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAATATAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	139705569	139717137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
transcript_126318.known	chr7	+	1024	5	FSM	ENSMUSG00000025464.16	ENSMUST00000097967.4	1024	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	115.705174905879	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGTGTAGAGTACTTCT	NA	False	NA	22	True	CATAAA	-14	NA	139705620	139714247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_139705796_139708930_139709184_139711559_139711673_139712293_139712452_139713922
transcript_126329.known	chr7	+	1595	11	FSM	ENSMUSG00000039018.16	ENSMUST00000036977.9	1595	11	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_3	26.942345851837	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCGTTTTCATTGTGCAC	NA	False	NA	NA	False	NA	NA	NA	139717476	139730699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_139717687_139718231_139718297_139720108_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
transcript_126330.nnic	chr7	+	1389	11	NNC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	10	168	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	141.576834263237	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTCTGGCTTCTCTTA	NA	False	NA	30	True	AATAAA	-31	NA	139717585	139730528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_139717761_139718231_139718297_139720108_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
transcript_126336.known	chr7	-	1460	13	FSM	ENSMUSG00000025480.6	ENSMUST00000026553.6	1460	13	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_11	16.7779617355625	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367765	140357141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367648
transcript_126337.nnic	chr7	-	1448	13	NNC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_12	46.3269629913294	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367807	140357141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367702
transcript_126338.nic	chr7	-	1429	12	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_11	47.3902385596844	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367797	140357141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140367648
transcript_126350.known	chr7	+	1989	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	0	0	0	0	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140461880	140478555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
transcript_126358.known	chr7	+	1096	12	FSM	ENSMUSG00000025487.16	ENSMUST00000166889.8	1096	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	351.508437762427	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCGGTGTCCTGCAGAC	NA	False	NA	NA	False	NA	NA	NA	140462384	140478201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140462480_140463412_140463492_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
transcript_126359.known	chr7	+	1391	11	FSM	ENSMUSG00000025487.16	ENSMUST00000151644.8	1391	11	0	0	0	0	multi-exon	FALSE	canonical	3	1065	junction_10	119.9970416302	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTGAAATTGCTGCTCC	NA	False	NA	NA	False	NA	NA	NA	140462326	140477825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329
transcript_126371.nic	chr7	-	1421	7	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	62.3475919520732	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461795	140443582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458051_140461675
transcript_126372.known	chr7	-	1416	7	FSM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	42.0135560133737	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461782	140443582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140461675
transcript_126373.known	chr7	-	1461	7	FSM	ENSMUSG00000025486.18	ENSMUST00000026559.14	1461	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	79.4187215543875	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140462222	140443582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140462070
transcript_126374.known	chr7	+	599	6	FSM	ENSMUSG00000025487.16	ENSMUST00000140411.8	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	1147	junction_5	133.449016481951	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTGCTTGGTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	140462341	140467178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931
transcript_126380.known	chr7	-	769	7	FSM	ENSMUSG00000025484.10	ENSMUST00000211624.2	769	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	49.886537930254	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCCTTTGAAATTATCAT	NA	False	NA	NA	False	NA	NA	NA	140437275	140434284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140434537_140434677_140434735_140434986_140435079_140435718_140435844_140436133_140436263_140436676_140436769_140437253
transcript_126383.known	chr7	+	719	4	FSM	ENSMUSG00000025481.13	ENSMUST00000106050.8	719	4	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_1	5.43650214343336	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGATATTCTAGCTGCC	NA	False	NA	-52	True	NA	NA	NA	140414930	140417800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140415172_140415524_140415665_140416659_140416796_140417598
transcript_126389.known	chr7	-	3851	3	FSM	ENSMUSG00000060314.14	ENSMUST00000106052.2	3851	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	4	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCACATTGGAGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	140402045	140389601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140393228_140398500_140398628_140401947
transcript_12639.known	chr10	+	2384	4	FSM	ENSMUSG00000096795.5	ENSMUST00000200889.4	2384	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.5764535535124	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATACTGCCATCCATT	NA	False	NA	NA	False	AATAAA	-23	NA	81540658	81557810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81540735_81554752_81554880_81555078_81555140_81555690
transcript_126392.known	chr7	-	1882	1	FSM	ENSMUSG00000025484.10	ENSMUST00000210157.2	1882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	140436183	140434301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140434300_140436200
transcript_126393.known	chr7	-	2268	4	FSM	ENSMUSG00000025484.10	ENSMUST00000026557.10	2268	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	2.62466929133727	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTCTCTATGTCTGTGT	NA	False	NA	-10	True	CATAAA	-31	NA	140437022	140433306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140434537_140434677_140434735_140434986_140435079_140436133
transcript_126394.known	chr7	-	354	4	FSM	ENSMUSG00000025484.10	ENSMUST00000211590.2	354	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	52.0917993119412	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACACCTGGCATCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	140436159	140434337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140434537_140434677_140434715_140434986_140435079_140436133
transcript_126397.known	chr7	+	2981	14	FSM	ENSMUSG00000062031.14	ENSMUST00000079403.11	2981	14	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	11.3032434995212	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGTGATGGATTCATG	NA	False	NA	15	True	ATTAAA	-27	NA	140521493	140527577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140524996_140525150_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
transcript_1264.known	chr1	-	3160	6	FSM	ENSMUSG00000041945.13	ENSMUST00000039672.6	3160	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	1.46969384566991	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGTGTGTGTGTCGTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	40829823	40811197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_40813707_40820540_40820751_40823536_40823667_40825326_40825371_40826689_40826778_40829644
transcript_12640.known	chr10	+	477	1	FSM	ENSMUSG00000111985.2	ENSMUST00000218202.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	NA	False	NA	NA	False	NA	NA	NA	81844212	81844689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81844200_81844700
transcript_126402.known	chr7	+	3145	13	FSM	ENSMUSG00000062031.14	ENSMUST00000169736.8	3145	13	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	11.7505910016854	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGAGTGTGTGATGGA	NA	False	NA	9	True	ATTAAA	-21	NA	140521478	140527571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
transcript_12641.known	chr10	+	2360	4	FSM	ENSMUSG00000061371.8	ENSMUST00000210325.2	2360	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	1.24721912892465	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTTTTATCTATATTA	NA	False	NA	NA	False	AATAAA	-11	NA	81883956	81897415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350
transcript_126418.known	chr7	-	765	2	FSM	ENSMUSG00000025489.6	ENSMUST00000026562.6	765	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGCTCTTCCTTTCC	NA	False	NA	NA	False	ATTAAA	-19	NA	140530204	140528870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140529362_140529930
transcript_126419.known	chr7	-	655	2	FSM	ENSMUSG00000060591.10	ENSMUST00000081649.10	655	2	0	0	0	0	multi-exon	FALSE	canonical	3	9574	junction_1	0	1767	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	False	NA	-12	True	AATAAA	-22	NA	140535900	140534749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140535087_140535582
transcript_12642.known	chr10	-	2035	4	FSM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	52.6898683071254	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATGTTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	82077107	82060683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_82062428_82063364_82063426_82063632_82063760_82077004
transcript_126421.known	chr7	+	736	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	0	0	0	0	multi-exon	FALSE	canonical	3	1139	junction_1	0	383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547952	140549738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140548352_140549401
transcript_126422.known	chr7	-	678	2	FSM	ENSMUSG00000025492.7	ENSMUST00000026565.7	678	2	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_1	0	799	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTGCTTTTATTCCTC	NA	False	NA	2	True	AATAAA	-23	NA	140590683	140589498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140589803_140590309
transcript_126423.known	chr7	-	813	3	FSM	ENSMUSG00000059108.5	ENSMUST00000211330.2	813	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGTGAGACTTCCTATC	NA	False	NA	NA	False	AATAAA	-17	NA	140597471	140595613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140596073_140596612_140596781_140597285
transcript_126429.known	chr7	+	3556	20	FSM	ENSMUSG00000055629.6	ENSMUST00000048002.7	3556	20	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_14	21.3235203654468	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTTCTGTGAGTGTTC	NA	False	NA	24	True	AATGAA	-25	NA	140641016	140652313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140641338_140643749_140643854_140644190_140644287_140644372_140644469_140644553_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785_140648675_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
transcript_12643.known	chr10	+	3330	4	FSM	ENSMUSG00000073427.5	ENSMUST00000210381.2	3330	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	14.0554457615387	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTTTATGTTGTC	NA	False	NA	3	True	AATAAA	-15	NA	82190149	82215470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82212394
transcript_126432.nnic	chr7	+	3477	20	NNC	ENSMUSG00000055629.6	novel	3556	20	NA	NA	-145	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	45.4790445183791	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTTCTGTGAGTGTTC	NA	False	NA	24	True	AATGAA	-25	NA	140640871	140652313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_140641114_140643749_140643854_140644190_140644287_140644372_140644469_140644553_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785_140648675_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
transcript_12644.known	chr10	+	490	5	FSM	ENSMUSG00000073427.5	ENSMUST00000211099.2	490	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	62.9816441512922	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAGAAAAAAGAAAAAAAAG	NA	False	NA	NA	False	AAAACA	-44	NA	82190088	82236680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82219596_82219679_82236587
transcript_126443.nic	chr7	+	2714	14	ISM	ENSMUSG00000055629.6	ENSMUST00000048002.7	3556	20	-199	3483	-199	-1935	5prime_fragment	FALSE	canonical	3	174	junction_7	12.6579955787244	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGACTTCATCTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	140640817	140648830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_140641338_140643749_140643854_140644190_140644287_140644372_140644469_140644553_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785
transcript_126451.nnic	chr7	+	1260	7	NNC	ENSMUSG00000055629.6	novel	476	3	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	76.3728063878469	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTTCTGTGAGTGTTC	NA	False	NA	24	True	AATGAA	-25	NA	140650161	140652313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_140650225_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
transcript_126453.known	chr7	+	2919	14	FSM	ENSMUSG00000054065.13	ENSMUST00000106039.9	2919	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	30.8055554814503	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCAGCTCCGTGTGTTTC	NA	False	NA	19	True	ATTAAA	-17	NA	140658130	140670423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140658348_140659818_140660015_140662254_140662335_140662467_140663100_140663175_140663300_140663967_140664173_140667548_140667724_140668196_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
transcript_126457.known	chr7	+	2848	13	FSM	ENSMUSG00000054065.13	ENSMUST00000066873.5	2848	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.7431112428279	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCAGCTCCGTGTGTTTC	NA	False	NA	19	True	ATTAAA	-17	NA	140659672	140670423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140660015_140662254_140662335_140662467_140663100_140663175_140663300_140663967_140664173_140667548_140667724_140668196_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
transcript_126459.known	chr7	+	1425	7	FSM	ENSMUSG00000054065.13	ENSMUST00000160403.8	1425	7	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.83156008298049	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCCAGCTCCGTGTGT	614	False	NA	16	True	ATTAAA	-14	NA	140668058	140670420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
transcript_126465.nic	chr7	-	1881	10	NIC	ENSMUSG00000025494.9	novel	1612	10	NA	NA	-153	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	41.7703894176098	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGGGCTTATTTCTGTC	NA	False	NA	-32	True	AATAAA	-15	NA	140676805	140671089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676472
transcript_126466.nnic	chr7	-	1816	10	NIC	ENSMUSG00000025494.9	novel	1612	10	NA	NA	-148	0	combination_of_known_splicesites	FALSE	canonical	3	90	junction_9	19.9616917069288	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGGGCTTATTTCTGTC	NA	False	NA	-32	True	AATAAA	-15	NA	140676800	140671089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
transcript_126468.known	chr7	-	1612	10	FSM	ENSMUSG00000025494.9	ENSMUST00000209294.2	1612	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	39.3474550920669	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGGGCTTATTTCTGTC	NA	False	NA	-32	True	AATAAA	-15	NA	140680455	140671089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
transcript_126471.known	chr7	-	1990	10	FSM	ENSMUSG00000025494.9	ENSMUST00000097958.3	1990	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	46.3395945676196	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140680459	140671087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140675231_140680391
transcript_126474.nic	chr7	-	2184	9	NIC	ENSMUSG00000025494.9	novel	1897	9	NA	NA	-153	0	intron_retention	FALSE	canonical	3	15	junction_8	44.2491172228328	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676805	140671087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676472
transcript_126475.nnic	chr7	-	2119	9	NIC	ENSMUSG00000025494.9	novel	1897	9	NA	NA	-148	0	intron_retention	FALSE	canonical	3	90	junction_8	21.1527185014125	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676800	140671087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
transcript_126477.known	chr7	-	1897	9	FSM	ENSMUSG00000025494.9	ENSMUST00000210167.2	1897	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	41.6921380478382	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140680437	140671087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
transcript_126478.nnic	chr7	-	2481	9	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-138	0	intron_retention	TRUE	canonical	3	5	junction_8	47.4590283823847	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676790	140671087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140675231_140676532
transcript_126481.known	chr7	-	1723	9	FSM	ENSMUSG00000025494.9	ENSMUST00000210978.2	1723	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	41.2445072100516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGGGCTTATTTCTGTC	NA	False	NA	-32	True	AATAAA	-15	NA	140680485	140671089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673244_140673639_140673839_140674694_140674859_140680391
transcript_126494.known	chr7	-	3019	24	FSM	ENSMUSG00000054662.9	ENSMUST00000067836.9	3019	24	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	30.0592986723404	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGATCCAGTTTCTA	NA	False	NA	-8	True	AATAAA	-28	NA	140697719	140681124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
transcript_1265.known	chr1	-	3311	7	FSM	ENSMUSG00000041945.13	ENSMUST00000131390.8	3311	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	5.1234753829798	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGTGTGTGTGTGTGTCG	NA	False	NA	NA	False	ATTAAA	-11	NA	40829847	40811200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_40813707_40820540_40820751_40823536_40823667_40825326_40825371_40826689_40826778_40829430_40829561_40829644
transcript_126511.nic	chr7	-	3300	22	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-39	0	intron_retention	FALSE	canonical	3	95	junction_6	23.6339238865797	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGCCTCATGATGTA	NA	False	NA	-21	True	AATAAA	-15	NA	140697758	140681137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
transcript_12652.known	chr10	-	716	3	FSM	ENSMUSG00000063320.12	ENSMUST00000079648.12	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	73.5	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82459030	82455684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_82456052_82458541_82458659_82458798
transcript_12653.known	chr10	-	406	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	131	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82459024	82455859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_82456052_82458541_82458659_82458927
transcript_12654.known	chr10	-	469	3	FSM	ENSMUSG00000063320.12	ENSMUST00000185168.8	469	3	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	174.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTTCATAACCATCTATG	NA	False	NA	84	True	NA	NA	NA	82459062	82455775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_82456052_82458541_82458659_82458986
transcript_12658.known	chr10	-	586	2	FSM	ENSMUSG00000063320.12	ENSMUST00000176200.8	586	2	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82458760	82455684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_82456052_82458541
transcript_126584.known	chr7	-	3088	23	FSM	ENSMUSG00000054662.9	ENSMUST00000210496.2	3088	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	49.4689359076452	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGATGTAGATCCAG	NA	False	NA	-14	True	AATAAA	-22	NA	140697686	140681130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682974_140683148_140683904_140684058_140684150_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
transcript_126590.known	chr7	+	3624	12	FSM	ENSMUSG00000025495.16	ENSMUST00000026568.10	3624	12	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	17.146910185967	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAACAAAAGTTGGTTG	6810	False	NA	NA	False	NA	NA	NA	140711198	140737519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
transcript_126591.nic	chr7	+	2062	12	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	-19	550	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	88.9139243899021	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATAGCCTCTGGCTGCCC	6791	False	NA	9	True	AATAAA	-14	NA	140711179	140736065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734850_140734910_140735246
transcript_126608.nnic	chr7	+	2038	10	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	-19	550	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	99.4836049523789	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATAGCCTCTGGCTGCCC	6791	False	NA	9	True	AATAAA	-14	NA	140711179	140736065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_140711431_140715221_140715324_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
transcript_12661.known	chr10	+	2959	10	FSM	ENSMUSG00000034674.19	ENSMUST00000092266.11	2959	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	369.308195427446	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTTAGTATACAGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	82465661	82486158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_82465774_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
transcript_126615.known	chr7	+	2119	8	FSM	ENSMUSG00000025495.16	ENSMUST00000174706.8	2119	8	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	19.06701393528	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGCTGCTGGCTCTCT	6825	False	NA	NA	False	AATAAA	-21	NA	140711213	140734236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887
transcript_12662.known	chr10	+	3502	10	FSM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	366.010456573289	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGGCTAACTTGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	82465692	82486633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
transcript_126620.known	chr7	+	655	4	FSM	ENSMUSG00000025495.16	ENSMUST00000173721.8	655	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	147.981980885061	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTAAAAAATAAACACTT	6868	False	NA	NA	False	TATAAA	-30	NA	140711256	140723555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140723259
transcript_126624.known	chr7	-	1658	10	FSM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_9	176.376561249007	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGGTCCTTGTCGTTCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	140748602	140740238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748486
transcript_126625.known	chr7	-	2091	10	FSM	ENSMUSG00000038650.16	ENSMUST00000106033.5	2091	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_9	110.454616120026	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	140749139	140740240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748588
transcript_126626.known	chr7	-	1656	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	7992	False	NA	NA	False	ATTAAA	-14	NA	140752770	140740240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
transcript_126633.known	chr7	-	580	1	FSM	ENSMUSG00000110275.2	ENSMUST00000211731.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATACTTGGCTGAACTGG	2385	False	NA	-83	True	GGGGCT	-31	NA	140758377	140757797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140757800_140758400
transcript_126637.known	chr7	-	2828	6	FSM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	141.994366085419	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTATCTCTGGTTCTCCTG	NA	False	NA	NA	False	AATAAA	-19	NA	140773873	140769017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140771108_140771254_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
transcript_126639.known	chr7	-	2272	6	FSM	ENSMUSG00000025499.19	ENSMUST00000168550.8	2272	6	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	252.24797323269	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGCAGGCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	140773917	140769846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742_140772895_140773752
transcript_126643.known	chr7	-	1199	5	FSM	ENSMUSG00000025499.19	ENSMUST00000097957.11	1199	5	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	76.3392919799496	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGGCTGGAAGTA	NA	False	NA	-2	True	AGTAAA	-18	NA	140773918	140770838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
transcript_126644.known	chr7	-	1122	5	FSM	ENSMUSG00000025499.19	ENSMUST00000124971.2	1122	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	242.211039178647	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGTCTCTGGCTGGA	NA	False	NA	-6	True	AGTAAA	-14	NA	140773795	140770842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140771381_140772043_140772254_140772354_140772534_140772742_140772895_140773752
transcript_126648.known	chr7	-	1073	5	FSM	ENSMUSG00000025499.19	ENSMUST00000124314.3	1073	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	269.37183872855	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTCTGGCTGGAAGT	328	False	NA	-3	True	AGTAAA	-17	NA	140772853	140770839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742
transcript_126649.nnic	chr7	-	2468	15	NNC	ENSMUSG00000025500.13	novel	2095	13	NA	NA	-1575	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_14	3.92792202424786	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCTGAGAGTTGAAAATGA	NA	False	NA	-1	True	AGTAAA	-14	NA	140795568	140789904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_140790118_140790193_140790444_140790603_140790801_140790885_140791006_140791084_140791275_140791390_140791482_140791696_140791969_140792308_140792398_140792498_140792571_140792838_140792995_140793114_140793203_140793546_140793700_140793786_140793991_140794347_140794416_140795263
transcript_126656.known	chr7	+	2502	13	FSM	ENSMUSG00000038637.16	ENSMUST00000070458.11	2502	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	5.23609269080167	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGCCTGGCCTGGCT	416	False	NA	10	True	AATAAA	-14	NA	140774088	140789962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140774531_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
transcript_126658.nnic	chr7	+	2829	13	NNC	ENSMUSG00000038637.16	novel	2502	13	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	7.27247474309048	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGCCTGGCCTGGCT	370	False	NA	10	True	AATAAA	-14	NA	140774042	140789962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_+_140774812_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
transcript_126669.known	chr7	+	2197	13	FSM	ENSMUSG00000038637.16	ENSMUST00000047093.11	2197	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.88597608670453	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTGCCTGGCCTGG	1318	False	NA	8	True	AATAAA	-12	NA	140774990	140789960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140775130_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
transcript_126673.known	chr7	+	1525	6	FSM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	23.1395764870492	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795772	140798571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
transcript_126675.nic	chr7	+	1537	6	NIC	ENSMUSG00000038618.13	novel	1525	6	NA	NA	-41	0	combination_of_known_junctions	TRUE	canonical	3	14	junction_2	127.53258407168	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795731	140798571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_140795854_140796633_140796765_140796941_140797626_140797798_140797931_140798002_140798082_140798182
transcript_126677.nic	chr7	+	1541	6	NIC	ENSMUSG00000038618.13	novel	661	3	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	122.763186664407	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140796075	140798571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_140796173_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
transcript_126679.known	chr7	+	1560	5	FSM	ENSMUSG00000038618.13	ENSMUST00000209500.2	1560	5	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	22.576259654779	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTCAGTGTGTCCTGAG	NA	False	NA	17	True	AATAAA	-14	NA	140795806	140798568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140798082_140798182
transcript_126692.nic	chr7	+	5387	18	NIC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_14	49.6786907872893	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCCATTGTGTTCTAAT	NA	False	NA	34	True	NA	NA	NA	140808681	140842613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840827_140841028_140841125_140841456_140841688_140841818_140842321
transcript_126696.known	chr7	+	5248	18	FSM	ENSMUSG00000038611.18	ENSMUST00000106027.9	5248	18	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_2	28.6346754247049	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGTACCTGTCTGCACC	NA	False	NA	-40	True	AAGAAA	-33	NA	140808701	140842539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841125_140841456_140841688_140841818_140842321
transcript_126698.nic	chr7	+	5533	18	NIC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-281	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_15	49.6653158513657	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCCATTGTGTTCTAAT	NA	False	NA	34	True	NA	NA	NA	140808415	140842613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841200_140841456_140841688_140841818_140842321
transcript_12670.nic	chr10	+	535	3	ISM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	-75	9380	-44	97	5prime_fragment	FALSE	canonical	3	526	junction_2	75	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAGGAAAAGCAGGAGAA	NA	False	NA	NA	False	AAGAAA	-19	NA	82465617	82477253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_82465873_82474534_82474711_82477149
transcript_12671.known	chr10	+	3422	15	FSM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	23.6837152353033	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGTGGTATTATTTCTT	NA	False	NA	NA	False	AATAAA	-23	NA	82534840	82578262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813_82575100_82577114
transcript_126711.nic	chr7	+	3470	14	ISM	ENSMUSG00000038611.18	ENSMUST00000106027.9	5248	18	-286	3151	-281	1406	5prime_fragment	FALSE	canonical	3	178	junction_2	18.9365180531251	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGCCAGAGAGCACCAGA	NA	False	NA	NA	False	NA	NA	NA	140808415	140839388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944
transcript_126717.known	chr7	-	507	4	FSM	ENSMUSG00000038580.14	ENSMUST00000167790.3	507	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.94392028877595	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGGTCTTTTAGCTC	NA	False	NA	NA	False	AATAAA	-11	NA	140859044	140858250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140858435_140858530_140858636_140858745_140858848_140858928
transcript_126718.known	chr7	-	617	3	FSM	ENSMUSG00000038580.14	ENSMUST00000210928.2	617	3	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTAGCTCATGGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	140859036	140858242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140858435_140858530_140858848_140858928
transcript_126719.nic	chr7	-	2837	13	NIC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	-514	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	40.4298947424908	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGAATGTTGTCAAGC	NA	False	NA	-7	True	AATAAA	-24	NA	140908117	140877097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354_140904530_140907191
transcript_126721.known	chr7	-	2135	12	FSM	ENSMUSG00000058886.10	ENSMUST00000080553.9	2135	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	32.0206544912746	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTTGTCAAGCCATTT	NA	False	NA	-2	True	AATAAA	-29	NA	140907585	140877092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140907191
transcript_126726.nic	chr7	-	2572	11	NIC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	-514	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	42.7906531850123	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGAATGTTGTCAAGC	NA	False	NA	-7	True	AATAAA	-24	NA	140908117	140877097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_140877530_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140907191
transcript_126728.nnic	chr7	-	2272	11	NNC	ENSMUSG00000058886.10	novel	2265	11	NA	NA	-531	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.7708807313721	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCTTTGGACTTTT	NA	False	NA	-28	True	GATAAA	-16	NA	140908134	140890205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_140890321_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140907191
transcript_12673.nic	chr10	+	2403	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	84	2950	84	-1917	5prime_fragment	FALSE	canonical	3	69	junction_7	9.81666256450355	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTATATGGATTCTTCCT	NA	False	NA	17	True	AATAAA	-26	NA	82534924	82575312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
transcript_126737.known	chr7	+	3191	21	FSM	ENSMUSG00000025504.15	ENSMUST00000026577.13	3191	21	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_6	10.2434125173206	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGATATCTGTTTCTTGG	NA	False	NA	7	True	AATAAA	-19	NA	140918792	140942933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140918972_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937230_140937455_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
transcript_126738.known	chr7	+	3341	20	FSM	ENSMUSG00000025504.15	ENSMUST00000140025.8	3341	20	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_6	10.3329610036278	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGATATCTGTTTCTTGG	NA	False	NA	7	True	AATAAA	-19	NA	140918868	140942933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140918972_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
transcript_12674.nic	chr10	+	2457	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	84	2896	84	-1863	5prime_fragment	FALSE	canonical	3	69	junction_7	9.81666256450355	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGCAAAATGAAGATAAAAG	NA	False	NA	71	True	TATAAA	-13	NA	82534924	82575366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
transcript_126744.known	chr7	+	1229	8	FSM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	0	0	0	0	multi-exon	FALSE	canonical	3	3267	junction_3	222.11993450864	2526	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3840	False	NA	18	True	ATTAAA	-17	NA	140972111	140982881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
transcript_126753.known	chr7	-	1898	8	FSM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	16.4564980032391	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTACACATTGGTTGTT	5437	False	NA	NA	False	NA	NA	NA	140994049	140987706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990690_140990799_140990898_140991005_140991710_140991788_140993914
transcript_126754.nnic	chr7	-	1461	8	NNC	ENSMUSG00000051007.16	novel	1898	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	60.2725104023723	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTTGTTGTTGTTTGT	5437	False	NA	-3	True	NA	NA	NA	140994049	140988098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990735_140990799_140990898_140991005_140991710_140991788_140993914
transcript_126758.known	chr7	-	2348	7	FSM	ENSMUSG00000051007.16	ENSMUST00000156353.8	2348	7	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	10.4721853816033	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGTGAGTTCTTGCGT	5483	False	NA	48	True	NA	NA	NA	140994003	140988047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140990799_140990898_140991005_140991710_140991788_140993914
transcript_126767.known	chr7	-	2546	10	FSM	ENSMUSG00000019082.19	ENSMUST00000106007.10	2546	10	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_9	39.7436228287703	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGCTTTAAGAGTCTGT	3505	False	NA	-19	True	AATAAA	-18	NA	141014507	141009661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141014443
transcript_126768.nic	chr7	-	2562	10	NIC	ENSMUSG00000019082.19	novel	2811	10	NA	NA	27	0	intron_retention	FALSE	canonical	3	12	junction_9	37.1154355431208	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTTGCTTTAAGAGTC	2729	False	NA	-22	True	AATAAA	-15	NA	141015283	141009664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141015200
transcript_126769.known	chr7	-	2568	10	FSM	ENSMUSG00000019082.19	ENSMUST00000124266.8	2568	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	41.7904827017402	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTTGCTTTAAGAGTC	461	False	NA	-22	True	AATAAA	-15	NA	141017551	141009664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012072_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
transcript_126773.known	chr7	-	3264	9	FSM	ENSMUSG00000019082.19	ENSMUST00000140602.8	3264	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_8	22.1835383787168	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGCTTTAAGAGTCTGT	272	False	NA	-19	True	AATAAA	-18	NA	141017740	141009661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
transcript_126778.nic	chr7	-	3203	8	NIC	ENSMUSG00000019082.19	novel	2568	10	NA	NA	-24	0	intron_retention	FALSE	canonical	3	72	junction_7	23.6246153191876	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCTTGCTTTAAGAGTC	437	False	NA	-22	True	AATAAA	-15	NA	141017575	141009664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
transcript_126785.known	chr7	-	3357	16	FSM	ENSMUSG00000025507.14	ENSMUST00000026580.12	3357	16	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_13	13.4154140201983	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGCAGAGATCATTC	NA	False	NA	-1	True	NA	NA	NA	141023938	141018025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021735_141022063_141022478_141022880_141023267_141023881
transcript_126786.known	chr7	-	3263	15	FSM	ENSMUSG00000025507.14	ENSMUST00000190068.7	3263	15	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_13	16.8336700983354	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGCAGAGATCATTC	NA	False	NA	-1	True	NA	NA	NA	141023266	141018025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021698_141022063_141022478_141022880
transcript_126787.known	chr7	-	3653	15	FSM	ENSMUSG00000025507.14	ENSMUST00000131980.8	3653	15	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_14	11.4118180776218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGCAGAGATCATTC	NA	False	NA	-1	True	NA	NA	NA	141023905	141018025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141022478_141022880_141023267_141023881
transcript_126788.known	chr7	+	964	5	FSM	ENSMUSG00000025508.14	ENSMUST00000084434.11	964	5	0	0	0	0	multi-exon	FALSE	canonical	3	11307	junction_1	1806.73116428538	3189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCACTGCTCTGCTGTA	2117	False	NA	NA	False	NA	NA	NA	141027282	141031498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141027621_141027820_141027945_141028638_141028688_141030916_141031016_141031144
transcript_126790.known	chr7	+	421	5	FSM	ENSMUSG00000025508.14	ENSMUST00000106004.8	421	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	6154.22628666675	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2459	False	NA	27	True	AATAAA	-20	NA	141027624	141031263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141027655_141027820_141027945_141028638_141028688_141030916_141031016_141031144
transcript_126792.known	chr7	+	449	4	FSM	ENSMUSG00000025508.14	ENSMUST00000106003.2	449	4	0	0	0	0	multi-exon	FALSE	canonical	3	11523	junction_3	1651.02843370091	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2597	False	NA	27	True	AATAAA	-20	NA	141027762	141031263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141027945_141028638_141028688_141030916_141031016_141031144
transcript_126793.known	chr7	+	2625	9	FSM	ENSMUSG00000025509.16	ENSMUST00000164016.8	2625	9	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	8.3132048573339	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTATCCTGTGCTGTGT	9945	False	NA	NA	False	NA	NA	NA	141035110	141040656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
transcript_126798.known	chr7	+	2048	10	FSM	ENSMUSG00000025509.16	ENSMUST00000026583.15	2048	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	29.0325487838889	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCCTCACTTCTGCAT	9953	False	NA	17	True	AATAAA	-18	NA	141035118	141040005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141035387_141036480_141036563_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
transcript_126799.nic	chr7	+	1762	10	NIC	ENSMUSG00000048200.13	novel	1158	8	NA	NA	-121	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	4.21929723245501	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTGGCTCTTGTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	141041686	141046526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_141041847_141043296_141043486_141043562_141043675_141044043_141044207_141044608_141044756_141044851_141044943_141045176_141045270_141045431_141045599_141045678_141045751_141045958
transcript_126807.known	chr7	+	1708	8	FSM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	29.0537854500854	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATAAGCACTCGAATC	NA	False	NA	-2	True	NA	NA	NA	141047334	141051376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
transcript_126809.known	chr7	+	1865	8	FSM	ENSMUSG00000025510.15	ENSMUST00000106000.10	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	68.1968938187848	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCGAATCAGCTTGCTGA	NA	False	NA	8	True	NA	NA	NA	141047305	141051386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
transcript_12681.known	chr10	-	2554	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGCCTTGCGTGTGGGT	NA	False	NA	-4	True	AATAAA	-43	NA	82599978	82584534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
transcript_126816.known	chr7	+	1619	7	FSM	ENSMUSG00000025510.15	ENSMUST00000058746.7	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	95.130465969402	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCGAATCAGCTTGCTG	710	False	NA	7	True	NA	NA	NA	141048734	141051385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141048810_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
transcript_126821.known	chr7	-	1650	2	FSM	ENSMUSG00000038489.9	ENSMUST00000043870.9	1650	2	0	0	0	0	multi-exon	FALSE	canonical	3	1072	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	8000	False	NA	NA	False	NA	NA	NA	141055045	141051772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141053318_141054940
transcript_126825.known	chr7	-	4222	13	FSM	ENSMUSG00000025512.16	ENSMUST00000166082.8	4222	13	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_12	22.800310670398	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGTCTGGTGTCTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	141119770	141073049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
transcript_126833.known	chr7	-	3910	11	FSM	ENSMUSG00000025512.16	ENSMUST00000118694.8	3910	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	66.3870469293521	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTCTGGTGTCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	141119717	141073050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141076060_141076283_141076327_141076513_141076595_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
transcript_126834.known	chr7	+	1466	8	FSM	ENSMUSG00000025511.16	ENSMUST00000026585.14	1466	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	68.6787850082111	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGAAGTTCTTTCATTT	3491	False	NA	45	True	NA	NA	NA	141055152	141073340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141055411_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
transcript_126838.known	chr7	+	1281	8	FSM	ENSMUSG00000025511.16	ENSMUST00000117634.2	1281	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	83.3289522657899	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACTGAGGAAGTTCTT	4651	False	NA	39	True	NA	NA	NA	141056312	141073334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141056392_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
transcript_126840.known	chr7	+	1157	7	FSM	ENSMUSG00000025511.16	ENSMUST00000239217.2	1157	7	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_2	25.1241362482817	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCACAGCCTCTGCTTCT	654	False	NA	NA	False	NA	NA	NA	141061976	141072866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
transcript_126848.known	chr7	+	4646	22	FSM	ENSMUSG00000002957.12	ENSMUST00000003038.12	4646	22	0	0	0	0	multi-exon	FALSE	canonical	3	504	junction_7	69.5768877620837	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTGTGGTTTTTGTGG	9596	False	NA	28	True	AATAAA	-22	NA	141142085	141212924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614_141178809_141182145_141182276_141184821_141184924_141189719_141189829_141191248_141191397_141192541_141192711_141194111_141194250_141199363_141199547_141200384_141200483_141200704_141200937_141201027_141201202_141203530_141203695_141206020_141206104_141207806_141207897_141209102_141209227_141209971_141210089_141210197_141210268_141210349_141210485_141211204
transcript_126865.known	chr7	-	3788	6	FSM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	12.1556571192182	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTGTTCTTGAGTAT	2697	False	NA	-5	True	AATAAA	-21	NA	141456224	141435319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141456012
transcript_126869.known	chr7	-	977	5	FSM	ENSMUSG00000025147.8	ENSMUST00000209732.2	977	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	68.6676779860802	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTCTGTGTGTGCGC	NA	False	NA	NA	False	AAAAAG	-5	NA	141579812	141562964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081_141570243_141579566
transcript_126870.known	chr7	-	1490	5	FSM	ENSMUSG00000025147.8	ENSMUST00000084418.4	1490	5	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	10.8857705285386	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCCTCTCAGCCTG	NA	False	NA	-34	True	AATAAA	-18	NA	141614802	141562286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081_141570243_141614721
transcript_126871.known	chr7	-	958	5	FSM	ENSMUSG00000025147.8	ENSMUST00000210684.2	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	69.7006994226026	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGATGTTTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	141614802	141562769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570130_141570243_141614721
transcript_126886.known	chr7	-	1922	9	FSM	ENSMUSG00000007891.17	ENSMUST00000066401.7	1922	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	696.59088378689	3460	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8865	False	NA	-8	True	AATAAA	-17	NA	141941594	141929653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931087_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
transcript_126905.known	chr7	+	1695	11	FSM	ENSMUSG00000018819.11	ENSMUST00000018963.11	1695	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	3.11287648325468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAGTCTGTTCCTGGTA	NA	False	NA	NA	False	AATAAA	-14	NA	142014582	142048604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_142014704_142038215_142038363_142040083_142040243_142042155_142042253_142042584_142042678_142042865_142042910_142043061_142043144_142043636_142043772_142044081_142044160_142044295_142044403_142047972
transcript_126906.known	chr7	+	1395	11	FSM	ENSMUSG00000018819.11	ENSMUST00000105967.8	1395	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	3.19374388453426	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGATCTCCTGTGCTCA	NA	False	NA	NA	False	AATAAA	-23	NA	142014600	142048340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_142014704_142038215_142038363_142040083_142040243_142042155_142042253_142042602_142042678_142042865_142042910_142043061_142043144_142043636_142043772_142044081_142044160_142044295_142044403_142047972
transcript_126907.known	chr7	+	692	5	FSM	ENSMUSG00000037772.14	ENSMUST00000038675.7	692	5	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	229.96847610053	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086748	142094484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094255
transcript_126912.known	chr7	-	1605	3	FSM	ENSMUSG00000009248.7	ENSMUST00000009392.6	1605	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	4	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTTGCAGTGCCTTGTA	NA	False	NA	-9	True	TATAAA	-15	NA	142523001	142520565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_142521077_142521636_142522437_142522707
transcript_126914.known	chr7	+	1582	9	FSM	ENSMUSG00000000244.18	ENSMUST00000009396.13	1582	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	3.07205143186113	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAGAATCCTTTCTT	3169	False	NA	NA	False	NA	NA	NA	142558782	142573223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_142558913_142559640_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142570937_142571022_142571315_142571411_142572427
transcript_126915.known	chr7	+	1876	8	FSM	ENSMUSG00000000244.18	ENSMUST00000075172.12	1876	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_6	2.66496544373966	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCAGACCCCACTTCCT	3761	False	NA	NA	False	NA	NA	NA	142559374	142573381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142570937_142571022_142571315_142571411_142572427
transcript_126917.known	chr7	+	1587	7	FSM	ENSMUSG00000000244.18	ENSMUST00000082008.12	1587	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	2.98142396999972	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAGAATCCTTTCTT	3808	False	NA	NA	False	NA	NA	NA	142559421	142573223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142571315_142571411_142572427
transcript_126927.known	chr7	+	1533	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	0	0	0	0	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	1460	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCAGACCTCTTCCTGT	NA	False	NA	42	True	AATAAA	-30	NA	142606475	142621671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
transcript_126941.known	chr7	+	1735	1	FSM	ENSMUSG00000045752.14	ENSMUST00000207776.2	1735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623089	142624824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_142623100_142624800
transcript_126942.known	chr7	+	1519	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	1	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGCTTTTTCCGGGC	NA	False	NA	22	True	AATAAA	-21	NA	142622985	142624830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_142623251_142623491_142623588_142623672
transcript_126944.known	chr7	-	1901	4	FSM	ENSMUSG00000037664.14	ENSMUST00000037287.8	1901	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	4.02768199119819	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACTTGTAGTCTTCTTG	NA	False	NA	NA	False	AATAAA	-16	NA	143014787	143012078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143012759_143012848_143012988_143013531_143014416_143014589
transcript_126948.known	chr7	-	1888	4	FSM	ENSMUSG00000037664.14	ENSMUST00000167912.9	1888	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.16441400296898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTAGTCTTCTTGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	143014733	143012075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143012759_143012848_143012988_143013531_143014454_143014589
transcript_126950.known	chr7	+	1525	11	FSM	ENSMUSG00000000154.17	ENSMUST00000052348.12	1525	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.44131112314674	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTGGGCTTTGCCTAG	856	False	NA	NA	False	AATAAA	-25	NA	143027472	143053071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_143027575_143029806_143030043_143033021_143033120_143033456_143033618_143034126_143034260_143044548_143044662_143045482_143045591_143046578_143046680_143050687_143050790_143051046_143051168_143052821
transcript_126951.known	chr7	-	757	2	FSM	ENSMUSG00000010760.6	ENSMUST00000010904.5	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTCTGTGTAGTTC	NA	False	NA	2	True	AATAAA	-27	NA	143056278	143055281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143055554_143055793
transcript_126963.known	chr7	-	2285	16	FSM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_2	192.287354411741	1084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTTTTTTTGTTGTTT	NA	False	NA	-1	True	ATTAAA	-20	NA	143102829	143067315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
transcript_126977.known	chr7	-	2281	15	FSM	ENSMUSG00000059119.10	ENSMUST00000209098.2	2281	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_14	301.333092528951	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACTGAGATTGGTTTTT	NA	False	NA	-10	True	ATTAAA	-11	NA	143102565	143067324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102473
transcript_126978.known	chr7	-	2259	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	1070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	-5	True	ATTAAA	-16	NA	143102843	143067319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
transcript_127.known	SIRV4001	+	3997	1	FSM	SIRV4001A	SIRV4001	3997	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4001_+_0_4000
transcript_12700.known	chr10	-	3722	5	FSM	ENSMUSG00000020248.19	ENSMUST00000143749.8	3722	5	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_1	69.3757882838098	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGAAATTTTGGGTACT	NA	False	NA	NA	False	NA	NA	NA	82599935	82585120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
transcript_127015.known	chr7	-	3222	23	FSM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	0	0	0	0	multi-exon	TRUE	canonical	3	290	junction_21	336.211639490553	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTGTCTAGCCTTCGC	NA	False	NA	NA	False	NA	NA	NA	143153827	143110966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
transcript_127022.known	chr7	-	2462	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_21	93.4109735380392	1360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGGTCTGCCCTCTC	NA	False	NA	-3	True	AATAAA	-15	NA	143153793	143111443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
transcript_127075.nic	chr7	-	2067	19	ISM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	-70	4173	-36	-132	5prime_fragment	FALSE	canonical	3	1234	junction_18	93.9579134834998	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGGAAGGAAAGAAAAG	NA	False	NA	-6	True	NA	NA	NA	143153863	143115616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
transcript_1271.known	chr1	+	1418	11	FSM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_3	42.3685024517034	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCCTTTTTTTTTAAA	NA	False	NA	14	True	AATAAA	-16	NA	42890392	42944842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
transcript_127109.known	chr7	-	2213	1	FSM	ENSMUSG00000010755.18	ENSMUST00000207168.2	2213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAAACGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	143153817	143151604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143151600_143153800
transcript_127110.known	chr7	-	2298	7	FSM	ENSMUSG00000010751.16	ENSMUST00000146692.8	2298	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	62.0232931154811	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGCTGTGCCTTGTGCT	NA	False	NA	NA	False	AGTAAA	-24	NA	143203398	143190461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143192174_143192981_143193027_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
transcript_127111.nnic	chr7	-	3242	7	Fusion	ENSMUSG00000010751.16_ENSMUSG00000037613.17	novel	1476	6	NA	NA	36	0	multi-exon	TRUE	canonical	0	0	junction_1	24.8378072032671	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTGGCTTGAATTGGCT	3144	False	NA	NA	False	NA	NA	NA	143239572	143188542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr7_-_143188592_143219596_143222330_143223718_143223793_143224568_143224681_143233681_143233811_143235196_143235288_143239518
transcript_127114.known	chr7	-	4170	6	FSM	ENSMUSG00000010751.16	ENSMUST00000075588.13	4170	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_4	22.3338308402298	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATCTGGCTTGAATTGG	NA	False	NA	NA	False	NA	NA	NA	143203398	143188544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143192174_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
transcript_127117.known	chr7	-	1476	6	FSM	ENSMUSG00000037613.17	ENSMUST00000152703.2	1476	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.9799923017695	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTTGTCCTCACTTTGT	3107	False	NA	NA	False	NA	NA	NA	143239609	143221350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143222330_143223718_143223793_143224568_143224681_143233681_143233811_143235196_143235288_143239518
transcript_127121.known	chr7	-	3775	22	FSM	ENSMUSG00000037606.19	ENSMUST00000119499.8	3775	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	1.94248362422582	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTTTTGGGGGAATCC	5770	False	NA	NA	False	AATAAA	-15	NA	143294078	143242498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143243695_143245624_143245728_143246594_143246722_143247508_143247636_143247934_143248121_143248545_143248683_143248776_143248867_143249251_143249350_143252970_143253070_143254450_143254548_143254928_143255028_143256426_143256509_143256887_143257073_143258246_143258440_143258705_143258878_143261082_143261168_143262744_143262949_143263275_143263378_143263509_143263591_143267232_143267316_143269402_143269560_143294006
transcript_127125.known	chr7	-	2641	21	FSM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	7.20416546173115	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTATTGATGTGTACG	NA	False	NA	NA	False	AATAAA	-25	NA	143376578	143349320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143349794_143351561_143351739_143352191_143352321_143352777_143352848_143353527_143353660_143356932_143357040_143357750_143357887_143359651_143359821_143360616_143360720_143361123_143361173_143361721_143361847_143362528_143362604_143364905_143365038_143366226_143366345_143366499_143366589_143367126_143367179_143369322_143369413_143369910_143369965_143372829_143372947_143374908_143374970_143376395
transcript_127144.known	chr7	+	2815	9	FSM	ENSMUSG00000058454.16	ENSMUST00000073878.12	2815	9	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	137.774045088326	1080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATGTTGTACTGTCTCC	NA	False	NA	31	True	NA	NA	NA	143376903	143402146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_143377278_143383875_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
transcript_127145.nic	chr7	+	2565	9	NIC	ENSMUSG00000058454.16	novel	2815	9	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	171.596137412822	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATGTTGTACTGTCTCC	NA	False	NA	31	True	NA	NA	NA	143383920	143402146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_+_143384003_143387504_143387674_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
transcript_127150.known	chr7	+	1652	9	FSM	ENSMUSG00000058454.16	ENSMUST00000207143.2	1652	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	179.604382950417	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGACAGCTGGAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	143383983	143401394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_143384003_143386586_143386658_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
transcript_127160.known	chr7	-	3286	18	FSM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	258.149054338875	1879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	-20	True	AATAAA	-14	NA	144024746	143989471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
transcript_127175.known	chr7	-	2913	17	FSM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	0	0	0	0	multi-exon	TRUE	canonical	3	340	junction_7	190.956545694956	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGATCTTCTGCAG	NA	False	NA	-18	True	AATAAA	-16	NA	144024482	143989469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
transcript_12719.nnic	chr10	+	3419	15	Fusion	ENSMUSG00000020250.12_ENSMUSG00000056821.14	novel	894	3	NA	NA	-112	0	multi-exon	FALSE	canonical	1	47	junction_2	264.185193238627	122	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCGTGCCTTCTGACTGA	NA	False	NA	13	True	AATAAA	-14	NA	82647844	82733544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr10_+_82647970_82654864_82654958_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
transcript_127211.nic	chr7	-	5133	29	NIC	ENSMUSG00000037519.18	novel	5181	31	NA	NA	-42	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_12	59.3187838061848	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAGAGTGCTGTGAACAG	NA	False	NA	-2	True	AATAAA	-24	NA	144107508	144030494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_144031727_144032763_144032835_144034821_144034988_144035447_144035517_144035996_144036173_144038580_144038679_144038769_144038946_144045188_144045390_144045478_144045561_144052033_144052128_144052443_144052617_144053988_144054141_144056603_144056634_144058639_144058872_144059807_144060032_144061865_144062002_144064018_144064099_144064610_144064674_144066982_144067115_144068177_144068262_144069722_144069858_144071336_144071484_144072885_144073105_144073281_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
transcript_127214.nic	chr7	-	4803	29	NIC	ENSMUSG00000037519.18	novel	5181	31	NA	NA	-42	-110	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	59.3187838061848	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTTACATTTATTTGTA	NA	False	NA	NA	False	AATAAA	-23	NA	144107508	144030824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_144031727_144032763_144032835_144034821_144034988_144035447_144035517_144035996_144036173_144038580_144038679_144038769_144038946_144045188_144045390_144045478_144045561_144052033_144052128_144052443_144052617_144053988_144054141_144056603_144056634_144058639_144058872_144059807_144060032_144061865_144062002_144064018_144064099_144064610_144064674_144066982_144067115_144068177_144068262_144069722_144069858_144071336_144071484_144072885_144073105_144073281_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
transcript_127222.nic	chr7	-	3376	24	NIC	ENSMUSG00000037519.18	novel	5181	31	NA	NA	-42	-654	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	62.1040349181846	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAACTGGAAAGAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	144107508	144038623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr7_-_144038679_144038769_144038946_144045188_144045390_144045478_144045561_144052033_144052128_144052443_144052617_144053988_144054141_144056603_144056634_144058639_144058872_144059807_144060032_144061865_144062002_144064018_144064099_144064610_144064674_144066982_144067115_144068177_144068262_144069722_144069858_144071336_144071484_144072885_144073105_144073281_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
transcript_127227.nic	chr7	-	1285	8	ISM	ENSMUSG00000037519.18	ENSMUST00000168134.10	5181	31	-42	40884	-42	1616	5prime_fragment	FALSE	canonical	2	132	junction_2	32.3526486945199	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAATGAAATTGCAAA	NA	False	NA	NA	False	NA	NA	NA	144107508	144071378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_144071484_144072885_144073105_144073281_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
transcript_127229.nic	chr7	-	877	6	ISM	ENSMUSG00000037519.18	ENSMUST00000168134.10	5181	31	-42	42871	-42	-371	5prime_fragment	FALSE	canonical	3	190	junction_1	19.4586741583285	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAATAATCAGAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	144107508	144073365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_144073384_144073712_144073788_144074361_144074527_144074696_144074799_144106006_144106271_144107255
transcript_12723.known	chr10	+	2297	15	FSM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	0	0	0	0	multi-exon	FALSE	canonical	1	267	junction_3	142.059218034492	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTGTAGCATTGTCTC	NA	False	NA	NA	False	AATACA	-16	NA	82695040	82732439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_82695135_82696357_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
transcript_127233.known	chr7	-	3903	2	FSM	ENSMUSG00000031077.8	ENSMUST00000033394.8	3903	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAGGTTTCTTGTTTATT	NA	False	NA	NA	False	ATTAAA	-12	NA	144136200	144131054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_144134598_144135840
transcript_127238.known	chr7	-	4552	26	FSM	ENSMUSG00000031075.20	ENSMUST00000121758.8	4552	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	7.88984157001901	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGTCTCTCCTGGCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	144292280	144142285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172658_144173211_144173224_144175404_144175488_144187332_144187494_144190811_144190947_144192236_144192302_144198444_144198487_144201760_144201817_144204239_144204292_144207940_144207996_144209335_144209488_144210751_144210851_144223079_144223413_144232370_144232517_144292099
transcript_127240.nic	chr7	-	4454	25	ISM	ENSMUSG00000031075.20	ENSMUST00000121758.8	4552	26	59615	66	-43	-62	3prime_fragment	FALSE	canonical	0	0	junction_12	7.1820329449413	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATGTATACACACCCAC	NA	False	NA	NA	False	NA	NA	NA	144232665	144142351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172658_144173211_144173224_144175404_144175488_144187332_144187494_144190811_144190947_144192236_144192302_144198444_144198487_144201760_144201817_144204239_144204292_144207940_144207996_144209335_144209488_144210751_144210851_144223079_144223413_144232370
transcript_127246.known	chr7	-	834	4	FSM	ENSMUSG00000031075.20	ENSMUST00000131731.2	834	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	4.08248290463863	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGAGTGAGAAGTCCAGG	NA	False	NA	NA	False	NA	NA	NA	144232622	144209337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_144209488_144210751_144210851_144223079_144223413_144232370
transcript_127248.known	chr7	+	2299	3	FSM	ENSMUSG00000031074.15	ENSMUST00000105898.2	2299	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	3.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCATATGGTTGGTG	NA	False	NA	3	True	NA	NA	NA	144392331	144398173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_144392665_144394407_144394512_144396311
transcript_127258.known	chr7	+	3030	3	FSM	ENSMUSG00000050917.6	ENSMUST00000060336.5	3030	3	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_2	22.5	2999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGTGTCTGCTTTG	8002	False	NA	28	True	ATTAAA	-18	NA	144415122	144418980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_144415570_144415968_144416073_144416501
transcript_127261.nic	chr7	+	3652	2	ISM	ENSMUSG00000050917.6	ENSMUST00000060336.5	3030	3	-191	-2	-191	2	intron_retention	FALSE	canonical	3	722	junction_1	0	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTGTCTGCTTTGTC	7811	False	NA	30	True	ATTAAA	-20	NA	144414931	144418982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr7_+_144415570_144415968
transcript_127262.known	chr7	+	1810	3	FSM	ENSMUSG00000031073.7	ENSMUST00000033389.7	1810	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTGTTCTATTCCAAG	NA	False	NA	NA	False	ATTAAA	-23	NA	144450267	144454690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_144450669_144450852_144450957_144453385
transcript_127264.known	chr7	+	2015	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	3.69966214673719	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCTGTCTGGGATCATT	NA	False	NA	8	True	AATAAA	-18	NA	144468871	144474871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
transcript_127266.known	chr7	-	3740	5	FSM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_3	35.5316760088797	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGTTGTCTGTGTTT	NA	False	NA	-4	True	AATAAA	-16	NA	144493606	144483667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_144486509_144487752_144487902_144491030_144491191_144491623_144491840_144493232
transcript_127269.nnic	chr7	-	3142	5	NNC	ENSMUSG00000070348.6	novel	3740	5	NA	NA	-27	-691	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	163.518347594391	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTTCCTGTTCACAATAC	NA	False	NA	59	True	NA	NA	NA	144493633	144484358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr7_-_144486575_144487752_144487902_144491030_144491191_144491623_144491840_144493232
transcript_12728.known	chr10	+	3325	14	FSM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	0	0	0	0	multi-exon	FALSE	canonical	1	113	junction_1	208.745903123884	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGCCTTCTGACTGAGT	NA	False	NA	15	True	AATAAA	-16	NA	82695012	82733546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
transcript_127280.known	chr7	-	2993	25	FSM	ENSMUSG00000048677.10	ENSMUST00000058022.6	2993	25	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	4.91860837364933	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTGGCCCTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	144837748	144807659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr7_-_144808436_144809187_144809271_144809616_144809699_144810250_144810334_144810466_144810549_144810908_144810983_144811532_144811605_144812251_144812352_144813825_144813876_144814608_144814738_144815669_144815730_144815884_144816005_144820294_144820382_144820514_144820597_144821039_144821141_144821804_144821870_144822596_144822663_144823470_144823571_144826016_144826093_144827598_144827706_144830845_144830963_144832473_144832652_144833013_144833091_144833965_144834031_144837587
transcript_127289.known	chr8	-	1675	3	FSM	ENSMUSG00000005534.11	ENSMUST00000139504.2	1675	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	9.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAAATCAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	3329551	3261100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_3261701_3308382_3308935_3329028
transcript_127293.nnic	chr8	+	3514	20	NNC	ENSMUSG00000004568.14	novel	5271	20	NA	NA	-4	276	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_15	61.0774450483058	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATGCTCAAAGTTCTT	NA	False	NA	47	True	NA	NA	NA	3443033	3504816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501606_3501679_3501814_3502286_3503037_3503372_3504158_3504285_3504371
transcript_127296.known	chr8	+	5271	20	FSM	ENSMUSG00000004568.14	ENSMUST00000004684.13	5271	20	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	25.5526180280738	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGCTGAAACAGACCT	NA	False	NA	24	True	AATAAA	-14	NA	3443037	3506601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501630_3501679_3501814_3502286_3503037_3503372_3504158_3504285_3504371
transcript_127303.nic	chr8	+	2785	17	ISM	ENSMUSG00000004568.14	ENSMUST00000004684.13	5271	20	-84	4196	-52	1765	5prime_fragment	TRUE	canonical	3	218	junction_1	25.2904996985034	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAAATGTGGTGGCATAG	NA	False	NA	NA	False	NA	NA	NA	3442953	3502405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501630_3501679_3501814
transcript_127305.nic	chr8	+	2825	16	NIC	ENSMUSG00000004568.14	novel	5271	20	NA	NA	0	1765	intron_retention	FALSE	canonical	3	218	junction_1	25.9508937974955	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAAATGTGGTGGCATAG	NA	False	NA	NA	False	NA	NA	NA	3443005	3502405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501679_3501814
transcript_127311.known	chr8	+	3843	12	FSM	ENSMUSG00000004568.14	ENSMUST00000131773.8	3843	12	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	24.575738893241	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAATAAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	3443005	3500640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382
transcript_127319.known	chr8	-	2870	5	FSM	ENSMUSG00000069633.13	ENSMUST00000004686.13	2870	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4.14578098794425	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	3517680	3507104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_3509435_3510271_3510335_3513921_3514101_3515782_3515972_3517571
transcript_127322.known	chr8	+	1999	2	FSM	ENSMUSG00000047264.9	ENSMUST00000061508.8	1999	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTTGTTACTTGCC	6316	False	NA	16	True	AGTAAA	-17	NA	3543137	3547208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3543310_3545381
transcript_127328.known	chr8	+	2065	14	FSM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_8	29.619280463035	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGTGGTCTAATTTGTAA	NA	False	NA	12	True	AATAAA	-13	NA	3550456	3565232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3550628_3555737_3555944_3557148_3557317_3557400_3557567_3558318_3558428_3558683_3558781_3559135_3559236_3560319_3560427_3560539_3560690_3560813_3560916_3561687_3561811_3562649_3562866_3564782_3564914_3565013
transcript_127365.known	chr8	+	2889	1	FSM	ENSMUSG00000004567.17	ENSMUST00000208739.2	2889	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAGAGAAAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	3550494	3553383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3550500_3553400
transcript_127369.nic	chr8	+	4492	35	NIC	ENSMUSG00000004565.16	novel	4496	35	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	1	8	junction_1	70.8391130011934	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	NA	False	NA	16	True	AATAAA	-20	NA	3565378	3594266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_3565557_3566506_3566569_3566680_3566750_3567076_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
transcript_127373.known	chr8	+	4438	34	FSM	ENSMUSG00000004565.16	ENSMUST00000004681.14	4438	34	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	67.8088925855767	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTGCTGTCTTTGGGT	NA	False	NA	17	True	AATAAA	-21	NA	3565383	3594267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3565557_3566680_3566750_3567076_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
transcript_127382.nic	chr8	+	4448	32	ISM	ENSMUSG00000004565.16	ENSMUST00000111070.4	4496	35	1440	0	-39	0	3prime_fragment	FALSE	canonical	1	71	junction_27	50.3064283424121	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	NA	False	NA	16	True	AATAAA	-20	NA	3566823	3594266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
transcript_127384.nic	chr8	+	4436	32	ISM	ENSMUSG00000004565.16	ENSMUST00000208002.2	4444	35	1399	1	-39	0	3prime_fragment	FALSE	canonical	1	71	junction_27	44.5244031581209	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	NA	False	NA	16	True	AATAAA	-20	NA	3566823	3594266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
transcript_127390.nnic	chr8	+	4375	32	NNC	ENSMUSG00000004565.16	novel	4496	35	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_1	56.946878143415	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	NA	False	NA	16	True	AATAAA	-20	NA	3566862	3594266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_3567143_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
transcript_12740.nic	chr10	+	721	6	ISM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	-60	17256	-32	-2533	5prime_fragment	TRUE	canonical	1	267	junction_3	167.888534450688	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTATAAAGCTGTACTCT	NA	False	NA	NA	False	NA	NA	NA	82694980	82715183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_82695135_82696357_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039
transcript_127401.known	chr8	+	5743	27	FSM	ENSMUSG00000004565.16	ENSMUST00000208851.2	5743	27	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_11	27.0369295987946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGGTGCAGTCAGGCT	NA	False	NA	NA	False	NA	NA	NA	3566862	3590370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968
transcript_127415.known	chr8	+	4496	35	FSM	ENSMUSG00000004565.16	ENSMUST00000111070.4	4496	35	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	73.9681498837968	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	NA	False	NA	16	True	AATAAA	-20	NA	3565383	3594266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3565557_3566509_3566569_3566680_3566750_3567076_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
transcript_127416.nic	chr8	+	781	5	ISM	ENSMUSG00000065952.14	ENSMUST00000136592.2	1621	6	-51	4251	-43	1928	5prime_fragment	FALSE	canonical	3	9	junction_4	8.46684711093805	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGCGATATTCTCACAT	NA	False	NA	NA	False	ATTAAA	-1	NA	3617946	3630525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_3618097_3623120_3623222_3627840_3628046_3629722_3629922_3630399
transcript_127419.known	chr8	+	960	3	FSM	ENSMUSG00000065952.14	ENSMUST00000153341.8	960	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617994	3628597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3618097_3623120_3623222_3627840
transcript_127421.known	chr8	+	637	2	FSM	ENSMUSG00000065952.14	ENSMUST00000138454.2	637	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTGTGTGTATGTGC	NA	False	NA	NA	False	NA	NA	NA	3617989	3623650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3618097_3623120
transcript_127422.known	chr8	+	3865	19	FSM	ENSMUSG00000044433.17	ENSMUST00000207432.2	3865	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	49.6220592623089	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCTGTCTGGTCATGCT	6672	False	NA	-94	True	NA	NA	NA	3637811	3658928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3649216_3649250_3650357_3650406_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
transcript_127432.known	chr8	-	2677	19	FSM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_12	44.2084358744927	1836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGTCTTGACCTCCTTC	1011	False	NA	-4	True	AATACA	-16	NA	3671316	3660086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
transcript_127441.known	chr8	+	3817	18	FSM	ENSMUSG00000044433.17	ENSMUST00000207970.2	3817	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	47.8996933480515	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCTGTCTGGTCATGCT	6672	False	NA	-94	True	NA	NA	NA	3637811	3658928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3649216_3649250_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
transcript_127444.known	chr8	+	3832	18	FSM	ENSMUSG00000044433.17	ENSMUST00000207077.2	3832	18	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	41.5373263579742	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCTGTCTGGTCATGCT	6672	False	NA	-94	True	NA	NA	NA	3637811	3658928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650357_3650406_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
transcript_127446.known	chr8	+	2584	18	FSM	ENSMUSG00000044433.17	ENSMUST00000207533.2	2584	18	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_11	48.3717581820154	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCTGTCTGGTCATGCT	6672	False	NA	-94	True	NA	NA	NA	3637811	3658928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650357_3650406_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3654853_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
transcript_127458.known	chr8	-	4409	18	FSM	ENSMUSG00000019470.13	ENSMUST00000163038.8	4409	18	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_11	45.4063544476041	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGGGTTCCTTGTATAGC	1022	False	NA	NA	False	GATAAA	-15	NA	3671305	3658420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
transcript_12746.known	chr10	+	3531	14	FSM	ENSMUSG00000020250.12	ENSMUST00000219442.3	3531	14	0	0	0	0	multi-exon	FALSE	canonical	1	267	junction_2	143.143532881919	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCGTGCCTTCTGACTGA	NA	False	NA	13	True	AATAAA	-14	NA	82696134	82733544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
transcript_127468.known	chr8	+	3925	17	FSM	ENSMUSG00000044433.17	ENSMUST00000171962.3	3925	17	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_7	34.0677174903163	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACGGTGTCTCCTCCCTA	6654	False	NA	26	True	AATAAA	-22	NA	3637793	3659048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650675_3650815_3651965_3652106_3652185_3652280_3652367_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
transcript_12747.known	chr10	+	5527	3	FSM	ENSMUSG00000034612.8	ENSMUST00000040110.8	5527	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGAATCTGTTTTCTGTG	9127	False	NA	NA	False	ATTAAA	-21	NA	82821331	83031734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_82821817_82927902_82927989_83026778
transcript_127470.known	chr8	+	2539	17	FSM	ENSMUSG00000044433.17	ENSMUST00000207712.2	2539	17	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_10	43.4825755331949	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCTGTCTGGTCATGCT	6672	False	NA	-94	True	NA	NA	NA	3637811	3658928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650675_3650815_3651965_3652106_3652185_3652280_3652367_3652426_3652553_3652628_3653431_3653502_3654853_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
transcript_127481.known	chr8	+	4450	17	FSM	ENSMUSG00000044433.17	ENSMUST00000057028.15	4450	17	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_7	31.8251448347058	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTACGTCTCGTGTT	6153	False	NA	53	True	NA	NA	NA	3637292	3659075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3637960_3647841_3648096_3648685_3648809_3648892_3648989_3650675_3650815_3651965_3652106_3652185_3652280_3652370_3652426_3652553_3652628_3653431_3653502_3653605_3655077_3656266_3656407_3656503_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
transcript_127486.known	chr8	-	2916	16	FSM	ENSMUSG00000019470.13	ENSMUST00000159909.8	2916	16	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_9	47.5294528570327	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCCGGTCTTGACCTCC	1025	False	NA	-7	True	AATACA	-13	NA	3671302	3660089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
transcript_12749.known	chr10	+	123179	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTGTCAGTAAAGTTC	NA	False	NA	5	True	AATAAA	-14	NA	83196084	83324369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
transcript_127501.known	chr8	+	1193	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTACTCTTCATTGATTT	5587	False	NA	NA	False	AAAACA	-14	NA	3671550	3674235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
transcript_127502.known	chr8	+	363	4	FSM	ENSMUSG00000087687.4	ENSMUST00000207389.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	322.072800603977	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5638	False	NA	10	True	NA	NA	NA	3671601	3673372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3671696_3672341_3672429_3672592_3672626_3673223
transcript_127503.known	chr8	-	504	4	FSM	ENSMUSG00000004630.19	ENSMUST00000136105.8	504	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGAGTGTGTGTTATTT	9774	False	NA	NA	False	AATAAA	-22	NA	3675545	3673370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_3673559_3674507_3674633_3674785_3674901_3675469
transcript_127504.known	chr8	+	376	1	FSM	ENSMUSG00000087687.4	ENSMUST00000208185.2	376	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5587	False	NA	NA	False	AATATA	-6	NA	3671550	3671926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3671600_3671900
transcript_127513.known	chr8	+	1847	19	FSM	ENSMUSG00000004626.15	ENSMUST00000004745.9	1847	19	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_17	74.555886735479	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4602	False	NA	16	True	AATAAA	-22	NA	3681169	3692795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691894_3692056_3692645
transcript_127517.nic	chr8	+	1950	19	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	83.3438697042797	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4570	False	NA	16	True	AATAAA	-22	NA	3681137	3692795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_3681279_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
transcript_12752.known	chr10	-	6027	23	FSM	ENSMUSG00000020256.15	ENSMUST00000020497.14	6027	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	8.2773463628096	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTCTCCTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	83370004	83323313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_83326499_83328338_83328539_83329292_83329399_83331732_83331899_83333335_83333435_83335702_83335803_83337757_83337852_83338305_83338394_83339805_83339912_83339989_83340061_83342461_83342613_83343878_83344007_83344476_83344597_83348153_83348302_83349446_83349539_83350318_83350445_83351911_83352047_83354207_83354298_83354496_83354599_83356133_83356300_83358565_83358801_83363168_83363314_83369830
transcript_127550.known	chr8	+	2908	19	FSM	ENSMUSG00000004626.15	ENSMUST00000160708.8	2908	19	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_10	31.5352536413174	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCGGCTTCCTAGTAAC	4387	False	NA	NA	False	NA	NA	NA	3680954	3693644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
transcript_127551.known	chr8	-	392	2	FSM	ENSMUSG00000089665.3	ENSMUST00000159364.3	392	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTGATGTCTTTCTAT	NA	False	NA	-4	True	AATACA	-15	NA	3722362	3721187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_3721397_3722179
transcript_127552.known	chr8	+	2546	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	0	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAATGTGTTTATGTA	NA	False	NA	NA	False	NA	NA	NA	3726298	3731255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_3726604_3729014
transcript_127554.known	chr8	-	1186	8	FSM	ENSMUSG00000051906.16	ENSMUST00000145007.8	1186	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	2.39045721866879	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGTGTCCCATTTAG	NA	False	NA	NA	False	AATAAA	-19	NA	4155835	4152786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_4153250_4153621_4153735_4154101_4154254_4154484_4154572_4154822_4154892_4155270_4155355_4155465_4155547_4155698
transcript_127557.known	chr8	+	3938	20	FSM	ENSMUSG00000011832.17	ENSMUST00000176149.9	3938	20	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_12	7.46144290294483	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATGCCGAATAGAGAGCCA	NA	False	NA	7	True	AATAAA	-22	NA	4216566	4258051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4250867_4250922_4251933_4251967_4252935_4253077_4253513_4253643_4255321_4255463_4255571_4255728_4255823_4255971_4256055_4256152_4256231_4256328_4256495
transcript_127559.known	chr8	+	3728	19	FSM	ENSMUSG00000011832.17	ENSMUST00000176825.3	3728	19	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_13	6.86285402963656	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGGGATGCCGAATAGAG	NA	False	NA	2	True	AATAAA	-17	NA	4216738	4258046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4250867_4250922_4252935_4253077_4253513_4253643_4255321_4255463_4255571_4255728_4255823_4255971_4256055_4256152_4256231_4256328_4256495
transcript_127560.nnic	chr8	+	3912	19	NIC	ENSMUSG00000011832.17	novel	3938	20	NA	NA	-54	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	9.20899318902754	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGGGATGCCGAATAGAG	NA	False	NA	2	True	AATAAA	-17	NA	4216512	4258046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4250867_4250922_4251933_4251967_4252935_4253077_4253513_4253643_4255321_4255463_4255571_4255728_4255823_4255971_4256055_4256152_4256231_4256328_4256495
transcript_127564.known	chr8	+	1542	11	FSM	ENSMUSG00000011832.17	ENSMUST00000239400.2	1542	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	5.9464274989274	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCTCCGGATGTAGT	NA	False	NA	NA	False	AATAAA	-24	NA	4216566	4243701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4243548
transcript_127568.nic	chr8	+	2167	5	NIC	ENSMUSG00000011832.17	novel	3728	19	NA	NA	-278	0	intron_retention	FALSE	canonical	3	19	junction_1	6.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGGGATGCCGAATAGAG	2317	False	NA	2	True	AATAAA	-17	NA	4255450	4258046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_4255728_4255823_4255971_4256055_4256152_4256231_4256328_4256495
transcript_127570.known	chr8	+	3878	3	FSM	ENSMUSG00000046589.8	ENSMUST00000053035.7	3878	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCTTGTACAGTATGATT	NA	False	NA	NA	False	AATAAA	-19	NA	4276826	4287470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4277006_4281661_4281805_4283914
transcript_127574.known	chr8	+	3525	12	FSM	ENSMUSG00000002948.20	ENSMUST00000062686.11	3525	12	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	114.000217485656	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	20	True	AATAAA	-21	NA	4288760	4297897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4289034_4290687_4290736_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
transcript_127577.known	chr8	+	3497	11	FSM	ENSMUSG00000002948.20	ENSMUST00000110998.9	3497	11	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_7	24.9617707705203	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGGTGTCCTAAGCCTG	NA	False	NA	19	True	AATAAA	-20	NA	4288739	4297896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
transcript_127589.known	chr8	+	1578	12	FSM	ENSMUSG00000002948.20	ENSMUST00000110999.8	1578	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	89.4399470719399	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	20	True	AATAAA	-21	NA	4288828	4297897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694_4295826_4297656
transcript_127592.known	chr8	+	1536	5	FSM	ENSMUSG00000011837.5	ENSMUST00000011981.5	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	11.3880419739304	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGATTCCCCCTTTGAC	NA	False	NA	16	True	AATAAA	-16	NA	4303079	4306220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4303305_4304281_4304402_4304550_4304620_4304991_4305374_4305480
transcript_127594.known	chr8	-	1212	2	FSM	ENSMUSG00000048644.9	ENSMUST00000053252.9	1212	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTGAGTTAACCAGTC	NA	False	NA	-16	True	AATAAA	-34	NA	4309274	4307659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_4308648_4309050
transcript_127600.known	chr8	-	1790	13	FSM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_5	35.4920765805553	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	False	NA	-13	True	AATAAA	-22	NA	4325913	4309730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
transcript_127601.nnic	chr8	-	2144	13	NNC	ENSMUSG00000002949.16	novel	1790	13	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	148.130479270435	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	False	NA	-13	True	AATAAA	-22	NA	4325959	4309730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_4310256_4310511_4310931_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
transcript_127606.known	chr8	-	3041	12	FSM	ENSMUSG00000002949.16	ENSMUST00000149827.8	3041	12	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_4	34.7196564708602	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	False	NA	-13	True	AATAAA	-22	NA	4325885	4309730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
transcript_127616.known	chr8	-	904	6	FSM	ENSMUSG00000002949.16	ENSMUST00000160549.2	904	6	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_5	26.8670802284134	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCCTGGGCTGACCTCTG	NA	False	NA	NA	False	NA	NA	NA	4325873	4317401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
transcript_127618.nic	chr8	-	431	4	ISM	ENSMUSG00000002949.16	ENSMUST00000160371.9	444	5	-110	406	-46	-406	5prime_fragment	FALSE	canonical	3	521	junction_3	24.1798814444295	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCTTGGAGAATTAACAG	NA	False	NA	NA	False	AATAAA	-4	NA	4325959	4318333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_4318381_4319854_4320026_4324136_4324233_4325842
transcript_127619.nic	chr8	-	297	3	ISM	ENSMUSG00000002949.16	ENSMUST00000160371.9	444	5	-110	2014	-46	-2014	5prime_fragment	FALSE	canonical	3	521	junction_2	29.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGATGAAAGAAAGTATAAA	NA	False	NA	NA	False	AAAACA	-3	NA	4325959	4319941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_4320026_4324136_4324233_4325842
transcript_127622.known	chr8	+	867	8	FSM	ENSMUSG00000023235.15	ENSMUST00000127460.8	867	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7.29830844253989	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAGGAAGGAACTACTGC	NA	False	NA	NA	False	NA	NA	NA	4375232	4409654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4375289_4377756_4377894_4399605_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
transcript_127630.nnic	chr8	-	2548	7	NNC	ENSMUSG00000040028.11	novel	2317	6	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	192	junction_6	712.072483826065	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTTGTTTTTTGTT	NA	False	NA	-1	True	ATTAAA	-21	NA	4375121	4338342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4362556_4362615_4374885
transcript_127634.known	chr8	-	5743	6	FSM	ENSMUSG00000040028.11	ENSMUST00000098950.6	5743	6	0	0	0	0	multi-exon	FALSE	canonical	3	1349	junction_5	146.904594890698	1400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAATCCCATTGTGTTCTT	NA	False	NA	NA	False	AATAAA	-33	NA	4375413	4335381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4374885
transcript_127643.known	chr8	-	2317	6	FSM	ENSMUSG00000040028.11	ENSMUST00000209010.2	2317	6	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_5	599.918127747445	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTTGTTTTTTGTT	NA	False	NA	-1	True	ATTAAA	-21	NA	4362619	4338342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4362556
transcript_127644.known	chr8	+	1058	6	FSM	ENSMUSG00000023235.15	ENSMUST00000024004.9	1058	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	5.67097875150313	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGTCTAGTGTGCAGTA	7913	False	NA	NA	False	AATAAA	-35	NA	4399587	4410020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
transcript_127645.known	chr8	+	485	3	FSM	ENSMUSG00000023235.15	ENSMUST00000069762.16	485	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCCAGCAACTGGAATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	4375226	4398788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4375289_4377756_4377894_4398502
transcript_127646.known	chr8	+	408	1	FSM	ENSMUSG00000109241.2	ENSMUST00000208558.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTGGTGTGCATGTTTT	NA	False	NA	NA	False	AAGAAA	-9	NA	4441725	4442133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_4441700_4442100
transcript_127651.known	chr8	-	2156	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_9	39.0672497112351	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	NA	False	NA	-5	True	TATAAA	-15	NA	4829554	4785975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
transcript_127654.known	chr8	-	2365	12	FSM	ENSMUSG00000022322.9	ENSMUST00000208856.2	2365	12	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	40.3396734765956	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAGAAAAGACTGAGTG	NA	False	NA	NA	False	TATAAA	-34	NA	4829551	4786229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
transcript_127657.nic	chr8	-	1761	12	ISM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	-50	3162	-37	-293	5prime_fragment	FALSE	canonical	3	204	junction_8	39.6578340514569	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAAATTAATGGTATGCT	NA	False	NA	NA	False	AATACA	-4	NA	4829604	4789137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
transcript_127659.nic	chr8	-	1007	4	ISM	ENSMUSG00000022322.9	ENSMUST00000208856.2	2365	12	-53	28321	-37	61	5prime_fragment	FALSE	canonical	3	272	junction_2	23.7205958328763	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTTTACAAAAGATAAAGAA	NA	False	NA	NA	False	ATTAAA	-11	NA	4829604	4814550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_4815090_4817906_4818023_4818143_4818312_4829420
transcript_127662.known	chr8	-	4793	5	FSM	ENSMUSG00000001300.17	ENSMUST00000001319.15	4793	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCTTCAAAGTATTTTCC	NA	False	NA	NA	False	AATAAA	-23	NA	8711242	8667433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_8670977_8672330_8672445_8673147_8673241_8689205_8689490_8710483
transcript_127666.known	chr8	-	3197	4	FSM	ENSMUSG00000040459.12	ENSMUST00000048545.10	3197	4	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_2	83.8424448328861	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTGTGAGGACTCTT	5255	False	NA	NA	False	TATAAA	-16	NA	8740521	8715074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_8717417_8731383_8731468_8733747_8733974_8739976
transcript_127671.known	chr8	-	3559	3	FSM	ENSMUSG00000040459.12	ENSMUST00000208252.2	3559	3	0	0	0	0	multi-exon	FALSE	canonical	3	891	junction_2	32	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTAAGCAATTTTTAT	5672	False	NA	-11	True	AATAAA	-35	NA	8740104	8716575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_8717417_8731383_8733974_8739976
transcript_127674.nnic	chr8	-	579	3	NNC	ENSMUSG00000040459.12	novel	3559	3	NA	NA	-15	-16551	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_2	445	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAGAAGAAGAATTGGAG	5240	False	NA	-20	True	AAGAAA	-34	NA	8740536	8733899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_8733974_8739976_8740105_8740159
transcript_127676.nic	chr8	-	2251	2	ISM	ENSMUSG00000040459.12	ENSMUST00000207817.2	970	5	-237	15095	-27	-14946	5prime_fragment	FALSE	canonical	3	891	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGAATTTTATTTCCTG	5228	False	NA	NA	False	ATTAAA	-20	NA	8740548	8732294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_8733974_8739976
transcript_127677.nic	chr8	-	646	2	ISM	ENSMUSG00000040459.12	ENSMUST00000207817.2	970	5	-237	16700	-27	-16551	5prime_fragment	FALSE	canonical	3	891	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAGAAGAAGAATTGGAG	5228	False	NA	-20	True	AAGAAA	-34	NA	8740548	8733899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_8733974_8739976
transcript_127680.known	chr8	-	5028	2	FSM	ENSMUSG00000049717.10	ENSMUST00000095476.6	5028	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTAGAATCAGTCTCCA	NA	False	NA	NA	False	NA	NA	NA	10026299	10019048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_10023808_10026030
transcript_127681.known	chr8	+	5191	3	FSM	ENSMUSG00000040396.13	ENSMUST00000139793.8	5191	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAGTCTTATTCTAAT	NA	False	NA	19	True	AATAAA	-20	NA	10027706	10042155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_10028020_10032863_10032971_10037384
transcript_127684.known	chr8	+	5074	2	FSM	ENSMUSG00000040396.13	ENSMUST00000048216.6	5074	2	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAGTCTTATTCTAAT	NA	False	NA	19	True	AATAAA	-20	NA	10027716	10042155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_10028020_10037384
transcript_127687.known	chr8	-	6323	2	FSM	ENSMUSG00000038894.8	ENSMUST00000040514.8	6323	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGATTGGAGGACATTTT	NA	False	NA	NA	False	AATAAA	-27	NA	11058458	11034680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11037015_11054469
transcript_127688.known	chr8	-	6615	52	FSM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_49	11.4163456879082	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCATTTTTATTTTGTATG	NA	False	NA	NA	False	AATAAA	-26	NA	11362826	11248422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601_11262736_11263503_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912_11268053_11268680_11268771_11268868_11268968_11269079_11269233_11269986_11270077_11270208_11270377_11270981_11271096_11271288_11271440_11272195_11272294_11272998_11273104_11273575_11273669_11276324_11276494_11276949_11277142_11281397_11281469_11281946_11282031_11283827_11283924_11285094_11285260_11286051_11286088_11286425_11286511_11287844_11287887_11288997_11289052_11289133_11289179_11289826_11289878_11290040_11290068_11291121_11291209_11292172_11292215_11292781_11292818_11294340_11294404_11294485_11294570_11295057_11295085_11295210_11295265_11295736_11295800_11295892_11295938_11296862_11296908_11297005_11297096_11317596_11317657_11362515
transcript_127695.nic	chr8	-	1396	13	ISM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	-416	42726	-416	3214	5prime_fragment	FALSE	canonical	3	33	junction_10	8.21034239372648	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACTTTGCCCCAACAGG	NA	False	NA	NA	False	NA	NA	NA	11363242	11291148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_11291209_11292172_11292215_11292781_11292818_11294340_11294404_11294485_11294570_11295057_11295085_11295210_11295265_11295736_11295800_11295892_11295938_11296862_11296908_11297005_11297096_11317596_11317657_11362515
transcript_127696.known	chr8	+	6450	48	FSM	ENSMUSG00000031503.14	ENSMUST00000033899.14	6450	48	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_4	6.83737233737166	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTTTTCTGTCCCCCGA	8480	False	NA	10	True	AATAAA	-20	NA	11362804	11499287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11363115_11363418_11363508_11363629_11363685_11404276_11404358_11448661_11448797_11449703_11449749_11451147_11451265_11452162_11452235_11452983_11453020_11453341_11453405_11454963_11455000_11456812_11456855_11458051_11458145_11458881_11458918_11459421_11459473_11460054_11460100_11463978_11464033_11464741_11464809_11465363_11465475_11465925_11466076_11470576_11470670_11471167_11471323_11473551_11473625_11473716_11473824_11475338_11475541_11475928_11475989_11477006_11477064_11477552_11477661_11479306_11479529_11481239_11481402_11483653_11483825_11484627_11484772_11487586_11487710_11487923_11488106_11488353_11488418_11488554_11488630_11488946_11489055_11489305_11489414_11490378_11490451_11491221_11491348_11491879_11491997_11493070_11493233_11493316_11493416_11493555_11493703_11493830_11493948_11494930_11495123_11495959_11496247_11498058
transcript_127700.known	chr8	-	1392	2	FSM	ENSMUSG00000031504.7	ENSMUST00000033900.7	1392	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTTCTTGGGAATGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	11528710	11503517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11504527_11528327
transcript_127716.known	chr8	-	1902	15	FSM	ENSMUSG00000056228.11	ENSMUST00000049461.7	1902	15	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	50.1547096288991	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTGGAAGATTAACTGT	NA	False	NA	-16	True	AGTAAA	-36	NA	11600783	11563976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580428_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
transcript_127717.nnic	chr8	-	1771	15	NNC	ENSMUSG00000056228.11	novel	2007	15	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_14	53.8474792391265	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTAAAGTGGGCCTATG	NA	False	NA	-60	True	ATTAAA	-25	NA	11600764	11564020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600563
transcript_127719.known	chr8	-	2007	15	FSM	ENSMUSG00000056228.11	ENSMUST00000210478.2	2007	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	58.1264016728076	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTAAAGTGGGCCTATG	NA	False	NA	-60	True	ATTAAA	-25	NA	11600741	11564020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580619_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
transcript_127727.known	chr8	+	1307	10	FSM	ENSMUSG00000031505.12	ENSMUST00000177955.8	1307	10	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	41.4568048294447	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547505	11563287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
transcript_127728.known	chr8	+	1359	10	FSM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	63.9388210675343	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547567	11563287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
transcript_127729.known	chr8	-	1375	10	FSM	ENSMUSG00000056228.11	ENSMUST00000209218.2	1375	10	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_1	59.3585048562161	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGAAGACATGGGATGCA	NA	False	NA	NA	False	NA	NA	NA	11600744	11571852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11572219_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
transcript_12773.nnic	chr10	+	5565	34	NNC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	0	-93	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_33	60.9430630422038	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGCAAGTTTGTTATCTC	NA	False	NA	-79	True	ATTAAA	-11	NA	83379804	83432244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034_83431755_83431954
transcript_127730.known	chr8	-	1352	10	FSM	ENSMUSG00000056228.11	ENSMUST00000211406.2	1352	10	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_1	59.6396586919215	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAATAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	11600766	11571887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11572209_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
transcript_127731.known	chr8	+	1108	9	FSM	ENSMUSG00000031505.12	ENSMUST00000178721.2	1108	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	91.7509366437204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547583	11563287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11562894
transcript_127739.known	chr8	-	826	4	FSM	ENSMUSG00000056228.11	ENSMUST00000210845.2	826	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	105.379736614251	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTCAGCCTGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	11600744	11596676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11597088_11597726_11597845_11600257_11600309_11600498
transcript_12774.nnic	chr10	+	5658	34	NNC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_33	60.9430630422038	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAACTGTCCTTCCAT	NA	False	NA	14	True	AATAAA	-17	NA	83379804	83432337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034_83431755_83431954
transcript_127741.known	chr8	+	664	1	FSM	ENSMUSG00000031505.12	ENSMUST00000209932.2	664	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAGAAAACGGTG	NA	False	NA	NA	False	NA	NA	NA	11547586	11548250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11547600_11548200
transcript_127743.known	chr8	+	2241	2	FSM	ENSMUSG00000045969.9	ENSMUST00000211007.2	2241	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11605570	11613250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11605979_11611417
transcript_127744.known	chr8	+	1866	2	FSM	ENSMUSG00000045969.9	ENSMUST00000210740.2	1866	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11606062	11613250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11606096_11611417
transcript_127747.known	chr8	+	721	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209646.2	721	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTGGGGAGAGCGAGAAGA	NA	False	NA	NA	False	CATAAA	-30	NA	11606110	11612048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11606201_11611417
transcript_127749.known	chr8	+	2814	2	FSM	ENSMUSG00000045969.9	ENSMUST00000054399.6	2814	2	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTTATTTCCTTATG	NA	False	NA	16	True	NA	NA	NA	11606065	11613251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11607046_11611417
transcript_12775.known	chr10	+	5858	33	FSM	ENSMUSG00000034560.7	ENSMUST00000038388.7	5858	33	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_12	27.5850956133924	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAACTGTCCTTCCAT	NA	False	NA	14	True	AATAAA	-17	NA	83379804	83432337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034
transcript_127752.known	chr8	+	1971	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11608428	11613250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11608567_11611417
transcript_127767.nic	chr8	-	2501	7	NIC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	-222	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	194.263280684287	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685258	11661583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11684810
transcript_127768.known	chr8	-	2398	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685754	11661582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
transcript_127775.nic	chr8	-	2489	7	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	-160	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	217.434281259112	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685196	11661583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11684810
transcript_127776.known	chr8	-	2447	7	FSM	ENSMUSG00000031508.15	ENSMUST00000211174.2	2447	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	195.638626610959	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
transcript_127789.known	chr8	-	2285	6	FSM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	111.790876193006	811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
transcript_127791.known	chr8	-	1767	6	FSM	ENSMUSG00000031508.15	ENSMUST00000211445.2	1767	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	197.58299521973	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGCCCAGAACTTGCTCT	NA	False	NA	NA	False	AATAAA	-39	NA	11685036	11664962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11684810
transcript_127801.known	chr8	-	5156	5	FSM	ENSMUSG00000031508.15	ENSMUST00000169782.3	5156	5	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_2	122.541829593001	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685757	11661582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
transcript_127811.known	chr8	-	1359	3	FSM	ENSMUSG00000031508.15	ENSMUST00000211389.2	1359	3	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_2	21.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACTGACAATACCAG	NA	False	NA	NA	False	NA	NA	NA	11685754	11677668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_11678531_11682865_11683019_11685410
transcript_127814.nnic	chr8	-	823	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3584	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_3	15.5897402159241	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTGATAGGGCTGTTT	NA	False	NA	-8	True	AATAAA	-22	NA	11716188	11705477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11715899
transcript_127817.nnic	chr8	-	439	3	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3584	-7125	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	3	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACGAAGGAAAAAGGCAAG	NA	False	NA	NA	False	NA	NA	NA	11716188	11712604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_11712692_11715035_11715099_11715899
transcript_127818.nic	chr8	+	4655	21	NIC	ENSMUSG00000031511.17	novel	4628	21	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	19.8655480669424	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTTGCTTCATCTTCCTT	NA	False	NA	17	True	ATTAAA	-27	NA	11778135	11885219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_11778417_11808430_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492_11881593_11881894_11881950_11882969
transcript_127822.known	chr8	+	4451	20	FSM	ENSMUSG00000031511.17	ENSMUST00000074856.13	4451	20	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_7	14.3717944757881	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTTGCTTCATCTTCCTT	9628	False	NA	17	True	ATTAAA	-27	NA	11808353	11885219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492_11881593_11881894_11881950_11882969
transcript_127825.nic	chr8	+	2301	19	NIC	ENSMUSG00000031511.17	novel	4926	19	NA	NA	31	-757	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	20.8732210744938	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATAGTCGAAGAAACCAAG	NA	False	NA	NA	False	AAGAAA	-4	NA	11778135	11881543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_11778417_11808430_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492
transcript_127831.nic	chr8	+	2133	18	ISM	ENSMUSG00000031511.17	ENSMUST00000074856.13	4451	20	-36	3676	1	-757	5prime_fragment	FALSE	canonical	3	61	junction_7	15.0390495171943	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATAGTCGAAGAAACCAAG	9592	False	NA	NA	False	AAGAAA	-4	NA	11808317	11881543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492
transcript_127838.known	chr8	+	2205	3	FSM	ENSMUSG00000031511.17	ENSMUST00000209686.2	2205	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	12	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGATTCTCCTGCCTCA	9591	False	NA	NA	False	NA	NA	NA	11808316	11836215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_11808518_11831154_11832656_11835712
transcript_127846.known	chr8	-	3797	22	FSM	ENSMUSG00000000759.15	ENSMUST00000000776.15	3797	22	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_11	12.9206544206397	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATGTGGTTTCTGAA	NA	False	NA	1	True	ATTAAA	-18	NA	12722248	12664276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
transcript_127848.nnic	chr8	-	4872	22	NNC	ENSMUSG00000000759.15	novel	3797	22	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_8	35.7078089365284	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTCATGTGGTTTCTG	NA	False	NA	-1	True	ATTAAA	-16	NA	12722141	12664278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12688987_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
transcript_127849.known	chr8	-	3515	21	FSM	ENSMUSG00000000759.15	ENSMUST00000164774.8	3515	21	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_12	36.8876673157846	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATGTGGTTTCTGAA	NA	False	NA	1	True	ATTAAA	-18	NA	12722099	12664276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
transcript_127862.known	chr8	+	604	4	FSM	ENSMUSG00000031441.16	ENSMUST00000143359.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	25.3683967872539	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTGATGTGCTGCTTT	NA	False	NA	10	True	AATAAA	-17	NA	12906959	12912205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_12907000_12907882_12907987_12909313_12909480_12911911
transcript_127867.known	chr8	+	3926	30	FSM	ENSMUSG00000031442.22	ENSMUST00000095456.10	3926	30	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	5.78098074781942	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCGTGCAGTAGACCAG	7904	False	NA	NA	False	NA	NA	NA	12923826	13069053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_12924017_12929881_12930151_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
transcript_127872.nic	chr8	+	5179	29	ISM	ENSMUSG00000031442.22	ENSMUST00000110879.9	3664	30	-184	-1192	-102	0	intron_retention	FALSE	canonical	2	4	junction_1	7.42548012602827	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGTAGCATTTCTGGTT	NA	False	NA	11	True	AATAAA	-18	NA	12965790	13070501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_12966055_13013163_13013248_13022978_13023094_13034859_13034951_13043828_13043949_13046609_13046727_13047245_13047396_13048368_13048494_13049948_13050064_13050742_13050863_13051281_13051474_13051810_13052003_13052637_13052798_13053574_13053649_13053884_13053962_13055449_13055517_13056724_13056841_13057684_13057755_13059466_13059560_13059653_13059747_13060415_13060542_13061378_13061601_13061728_13061822_13062800_13062880_13062997_13063065_13063534_13063651_13067346_13067469_13068060_13068174_13068695
transcript_127878.known	chr8	-	2860	14	FSM	ENSMUSG00000038542.15	ENSMUST00000164416.8	2860	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.1979915149282	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTTGTGTTTTGTCC	NA	False	NA	-6	True	AATAAA	-17	NA	13155459	13127188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145873_13147602_13147669_13148562_13148637_13150324_13150415_13154774
transcript_127887.known	chr8	-	2678	11	FSM	ENSMUSG00000038542.15	ENSMUST00000168164.8	2678	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	93.0666965138443	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTTGTGTTTTGTCC	NA	False	NA	-6	True	AATAAA	-17	NA	13155459	13127188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13150324_13150415_13154774
transcript_127895.known	chr8	+	3728	20	FSM	ENSMUSG00000031446.15	ENSMUST00000016680.14	3728	20	0	0	0	0	multi-exon	TRUE	canonical	2	216	junction_3	44.2424070515772	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTACTAATACATTGG	NA	False	NA	26	True	AATAAA	-23	NA	13155620	13197940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13155904_13156193_13156310_13165469_13165574_13171676_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
transcript_12790.nic	chr10	+	343	3	ISM	ENSMUSG00000034560.7	ENSMUST00000217842.2	5014	33	189	45932	0	-38698	5prime_fragment	FALSE	canonical	3	353	junction_2	3.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTGAAAACAAGGTATGTG	NA	False	NA	NA	False	CATAAA	-1	NA	83379804	83385366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_83379967_83382648_83382789_83385325
transcript_127910.nnic	chr8	+	3454	18	NIC	ENSMUSG00000031446.15	novel	3728	20	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	84.9753475343368	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTACTAATACATTGG	NA	False	NA	26	True	AATAAA	-23	NA	13155720	13197940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_13155904_13156193_13156310_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
transcript_127916.known	chr8	+	2229	9	FSM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	0	0	0	0	multi-exon	FALSE	canonical	3	2416	junction_1	214.397848636594	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACGTGTCCTTCTGTGAC	8202	False	NA	21	True	AATAAA	-22	NA	13209160	13225338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13209435_13215848_13215968_13217157_13217378_13217806_13217966_13221204_13221384_13222540_13222661_13223626_13223694_13223779_13223951_13224418
transcript_127919.nic	chr8	+	578	3	ISM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	-48	8044	-48	-6590	5prime_fragment	FALSE	canonical	3	2416	junction_1	197.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACACGTTACAGTGTCC	8154	False	NA	NA	False	NA	NA	NA	13209112	13217294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_13209435_13215848_13215968_13217157
transcript_12792.nic	chr10	-	2847	21	NIC	ENSMUSG00000020263.15	novel	3020	21	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	21.7591360122593	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	83484643	83435896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_83436692_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
transcript_127920.known	chr8	-	3013	8	FSM	ENSMUSG00000038515.11	ENSMUST00000210317.2	3013	8	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_2	30.9812319750826	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAGTAAATAAAAAT	3637	False	NA	NA	False	NA	NA	NA	13250620	13225161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
transcript_127921.known	chr8	+	1039	1	FSM	ENSMUSG00000099338.2	ENSMUST00000190461.2	1039	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGCCTCCATCTTT	NA	False	NA	NA	False	NA	NA	NA	13250751	13251790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13250800_13251800
transcript_127922.known	chr8	+	913	2	FSM	ENSMUSG00000099338.2	ENSMUST00000190673.2	913	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGAAAAGCACCTTGATT	NA	False	NA	NA	False	NA	NA	NA	13250719	13257702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13251294_13257363
transcript_127925.known	chr8	-	2729	7	FSM	ENSMUSG00000038506.14	ENSMUST00000203467.3	2729	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	15.2397506541282	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13337830	13305963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330916_13331126_13337803
transcript_127928.known	chr8	-	2937	6	FSM	ENSMUSG00000038506.14	ENSMUST00000110839.10	2937	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	17.0105849399719	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATGTCCTTTATTCT	NA	False	NA	-2	True	AATAAA	-15	NA	13338126	13305962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13307977_13311384_13311468_13321589_13321721_13328516_13328686_13330908_13331126_13337803
transcript_127929.known	chr8	-	2955	6	FSM	ENSMUSG00000038506.14	ENSMUST00000110838.8	2955	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	13.5558105622644	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13338131	13305963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13307977_13308946_13309044_13321589_13321721_13328516_13328686_13330908_13331126_13337803
transcript_12793.known	chr10	-	3020	21	FSM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	12.9324205004322	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	83484602	83435896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
transcript_127931.known	chr8	-	2853	5	FSM	ENSMUSG00000038506.14	ENSMUST00000110840.8	2853	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	12.0701077045733	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATGTCCTTTATTCT	NA	False	NA	-2	True	AATAAA	-15	NA	13338125	13305962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13307977_13321589_13321721_13328516_13328686_13330908_13331126_13337803
transcript_127936.known	chr8	+	4335	13	FSM	ENSMUSG00000038497.8	ENSMUST00000045229.7	4335	13	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_7	13.4873912311545	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGCTTTCCTGAGTGGT	NA	False	NA	NA	False	AATAGA	-22	NA	13338210	13372924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358345_13358467_13360144_13360341_13363805_13363957_13368842_13368923_13369762_13369913_13370760
transcript_127947.nic	chr8	+	2576	9	ISM	ENSMUSG00000038497.8	ENSMUST00000045229.7	4335	13	-319	12117	-298	6722	5prime_fragment	FALSE	canonical	3	15	junction_7	14.0512454963964	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATTTGTGTTAGGAAGT	NA	False	NA	NA	False	AAAACA	-8	NA	13337891	13360807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358345_13358467_13360144
transcript_127951.known	chr8	+	2723	5	FSM	ENSMUSG00000038497.8	ENSMUST00000210063.2	2723	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	9.44391338376205	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13338189	13347617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979
transcript_127953.nic	chr8	+	3993	4	ISM	ENSMUSG00000038497.8	ENSMUST00000210063.2	2723	5	-298	-30	-298	-2	intron_retention	FALSE	canonical	3	38	junction_3	9.41629792788369	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGCAAATGGGTCAA	NA	False	NA	NA	False	NA	NA	NA	13337891	13347647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845
transcript_127954.known	chr8	+	1802	1	FSM	ENSMUSG00000038497.8	ENSMUST00000211402.2	1802	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-40	NA	13338208	13340010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13338200_13340000
transcript_127975.known	chr8	+	2511	12	FSM	ENSMUSG00000038482.12	ENSMUST00000209885.2	2511	12	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	150.974903502547	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2103	False	NA	94	True	AATAAA	-24	NA	13388750	13428448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_127983.nic	chr8	+	2362	12	NIC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-5	-262	combination_of_known_junctions	FALSE	canonical	3	464	junction_1	173.205128471779	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTCAATCATTTTTAATA	2098	False	NA	NA	False	ATTAAA	-36	NA	13388745	13428180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_13388921_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_127984.nic	chr8	+	2546	12	NIC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-5	-78	combination_of_known_junctions	FALSE	canonical	3	464	junction_1	173.205128471779	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAAGAGACTTTAATTGT	2098	False	NA	10	True	AATAAA	-24	NA	13388745	13428364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_13388921_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_127985.nic	chr8	+	2630	12	NIC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	464	junction_1	173.205128471779	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2098	False	NA	94	True	AATAAA	-24	NA	13388745	13428448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_13388921_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_128.known	SIRV4002	+	3999	1	FSM	SIRV4002A	SIRV4002	3999	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	612	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4002_+_0_4000
transcript_128003.known	chr8	+	2421	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2120	False	NA	88	True	AATAAA	-18	NA	13388767	13428442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_128012.nic	chr8	+	2563	11	NIC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	161	junction_2	301.20167662216	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2098	False	NA	94	True	AATAAA	-24	NA	13388745	13428448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_13388921_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_12802.nic	chr10	-	1579	10	ISM	ENSMUSG00000020263.15	ENSMUST00000147582.8	3377	14	-44	7916	24	698	5prime_fragment	FALSE	canonical	3	97	junction_4	6.21825270205921	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACATAGTGCCTTGCATA	NA	False	NA	NA	False	ATTAAA	-17	NA	83484578	83449424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
transcript_128027.known	chr8	+	2682	13	FSM	ENSMUSG00000038482.12	ENSMUST00000210501.2	2682	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	432.048311020371	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2143	False	NA	94	True	AATAAA	-24	NA	13388790	13428448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13388912_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420168_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_12803.known	chr10	+	1194	6	FSM	ENSMUSG00000087651.4	ENSMUST00000150459.3	1194	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	8.16333265278342	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGATTTCTTAATTATTT	NA	False	NA	6	True	ATTAAA	-19	NA	83558728	83598626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595456_83595495_83597781
transcript_128031.known	chr8	-	2548	15	FSM	ENSMUSG00000031451.7	ENSMUST00000033828.7	2548	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	9.27719389312373	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTTGGTCACTGTCT	5760	False	NA	1	True	AATAAA	-23	NA	13544490	13515373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13515901_13516626_13516856_13518191_13518365_13520218_13520388_13521448_13521614_13524656_13524847_13525038_13525158_13526111_13526234_13527043_13527167_13528251_13528375_13529006_13529130_13533673_13533737_13535670_13535696_13543845_13544013_13544260
transcript_128038.known	chr8	-	4404	24	FSM	ENSMUSG00000031453.17	ENSMUST00000117551.4	4404	24	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	7.20402114134286	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGCTTTGAGAGCAATG	NA	False	NA	NA	False	ATTAAA	-14	NA	13727603	13616947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13618767_13620238_13620423_13626336_13626441_13627359_13627569_13627806_13627890_13628607_13628715_13630033_13630108_13631250_13631329_13632298_13632377_13633749_13633857_13634912_13635037_13635673_13635749_13636873_13636989_13637951_13638101_13638863_13639021_13640201_13640307_13642003_13642081_13645334_13645408_13645808_13645890_13648213_13648291_13655861_13655957_13664533_13664638_13681774_13681893_13727392
transcript_128041.nic	chr8	-	3237	21	ISM	ENSMUSG00000031453.17	ENSMUST00000117551.4	4404	24	-53	9525	-53	997	5prime_fragment	FALSE	canonical	3	48	junction_6	6.62947961758689	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCACCGTTTTGTCTCTGCT	NA	False	NA	NA	False	CATAAA	-20	NA	13727656	13626472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_13627569_13627806_13627890_13628607_13628715_13630033_13630108_13631250_13631329_13632298_13632377_13633749_13633857_13634912_13635037_13635673_13635749_13636873_13636989_13637951_13638101_13638863_13639021_13640201_13640307_13642003_13642081_13645334_13645408_13645808_13645890_13648213_13648291_13655861_13655957_13664533_13664638_13681774_13681893_13727392
transcript_128044.known	chr8	+	2301	18	FSM	ENSMUSG00000038416.16	ENSMUST00000043962.9	2301	18	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_10	60.600055957127	745	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCAAGCTGGTAGAGTG	NA	False	NA	17	True	AATAAA	-24	NA	13807675	13831938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13807855_13808997_13809053_13809139_13809238_13810529_13810569_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13818560_13818635_13819376_13819503_13821297_13821451_13823340_13823405_13825707_13825770_13827471_13827608_13829227_13829319_13831371
transcript_128063.known	chr8	+	2057	9	FSM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_6	38.5873603010105	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCATCTTGTGGTGCT	NA	False	NA	NA	False	NA	NA	NA	13835614	13849193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
transcript_12807.known	chr10	-	3089	2	FSM	ENSMUSG00000046841.6	ENSMUST00000053871.5	3089	2	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_1	0	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGGGTTCTGAGAACT	NA	False	NA	-15	True	AATAAA	-26	NA	84369926	84362168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_84364642_84369310
transcript_128071.known	chr8	+	1131	2	FSM	ENSMUSG00000038398.9	ENSMUST00000211643.2	1131	2	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGGAGCCTAGACAAGT	NA	False	NA	NA	False	AATACA	-12	NA	13835644	13837037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13835885_13836146
transcript_128072.known	chr8	+	4013	2	FSM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	0	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATGTGTACTTAATTT	NA	False	NA	17	True	ATTAAA	-19	NA	13919640	13931639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13919812_13927797
transcript_128075.known	chr8	+	3977	2	FSM	ENSMUSG00000047710.9	ENSMUST00000128557.3	3977	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATGTGTACTTAATTT	NA	False	NA	17	True	ATTAAA	-19	NA	13919703	13931639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13919839_13927797
transcript_128078.known	chr8	-	793	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTATGCTCTGTCTGCG	NA	False	NA	-8	True	AATAAA	-16	NA	13940268	13934793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
transcript_128083.nnic	chr8	-	632	3	NIC	ENSMUSG00000031458.9	novel	793	4	NA	NA	-45	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	324	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTAGTATGCTCTGTCT	NA	False	NA	-11	True	AATAAA	-13	NA	13940326	13934796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_13935202_13937759_13937827_13940166
transcript_128084.known	chr8	+	2035	11	FSM	ENSMUSG00000038365.9	ENSMUST00000209913.2	2035	11	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_9	44.5353791945235	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAATTTTTCTGCAACAA	NA	False	NA	13	True	AATAAA	-19	NA	13957802	13990521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981184_13981365_13985145_13985290_13988921_13988949_13989562
transcript_128085.known	chr8	+	2012	10	FSM	ENSMUSG00000038365.9	ENSMUST00000043520.5	2012	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_9	11.3572731903828	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTTTTCTGCAACAAT	NA	False	NA	14	True	AATAAA	-20	NA	13957802	13990522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
transcript_128091.known	chr8	-	373	4	FSM	ENSMUSG00000050052.13	ENSMUST00000145695.2	373	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	120.875509880575	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCTGAAGGCAGAGAAGAAA	4525	False	NA	NA	False	ACTAAA	-39	NA	14025032	14004112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_14004136_14005719_14005818_14024540_14024730_14024969
transcript_128097.known	chr8	-	323	2	FSM	ENSMUSG00000050052.13	ENSMUST00000210414.2	323	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGGCTGCCCACCCTGG	4864	False	NA	NA	False	NA	NA	NA	14024693	14003965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_14004136_14024540
transcript_128098.known	chr8	-	2463	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_2	12.5	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4780	False	NA	-4	True	ATTAAA	-18	NA	14024777	14002007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_14004136_14005719_14005818_14024540
transcript_1281.known	chr1	-	5607	13	FSM	ENSMUSG00000070939.10	ENSMUST00000095014.8	5607	13	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_11	15.5393765068687	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGCCTCACTCTAAGGTC	7783	False	NA	61	True	AATAAA	-33	NA	43137782	43086359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_43088996_43090717_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43136011_43136210_43137429
transcript_128102.nnic	chr8	-	1647	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140327	14077560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
transcript_128103.known	chr8	-	1557	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140301	14077560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
transcript_128104.nnic	chr8	-	1314	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	-26	-333	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCTGTCATTTGACTC	NA	False	NA	NA	False	NA	NA	NA	14140327	14077893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
transcript_128107.nnic	chr8	-	609	4	NNC	ENSMUSG00000051978.10	novel	422	5	NA	NA	-26	108	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_3	92.9241028414528	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGACGAAGCTGCGGCT	NA	False	NA	NA	False	AATAAA	-10	NA	14140327	14083588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_14083765_14114204_14114340_14128769_14128917_14140176
transcript_128108.nic	chr8	-	564	4	ISM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	-45	6028	-45	108	5prime_fragment	FALSE	canonical	3	204	junction_3	44.5745318414999	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGACGAAGCTGCGGCT	NA	False	NA	NA	False	AATAAA	-10	NA	14140346	14083588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_14083765_14114204_14114340_14128769_14128917_14140240
transcript_128110.nic	chr8	-	511	4	ISM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	-45	6081	-45	55	5prime_fragment	FALSE	canonical	3	204	junction_3	44.5745318414999	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACCCACAGCATCCAGAC	NA	False	NA	NA	False	AAGAAA	-2	NA	14140346	14083641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_14083765_14114204_14114340_14128769_14128917_14140240
transcript_128111.nnic	chr8	-	460	4	NNC	ENSMUSG00000051978.10	novel	422	5	NA	NA	-26	-41	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_3	92.9241028414528	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACGAAGAATTAGAAGACAC	NA	False	NA	NA	False	NA	NA	NA	14140327	14083737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_14083765_14114204_14114340_14128769_14128917_14140176
transcript_128112.nic	chr8	-	415	4	ISM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	-45	6177	-45	-41	5prime_fragment	FALSE	canonical	3	204	junction_3	44.5745318414999	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACGAAGAATTAGAAGACAC	NA	False	NA	NA	False	NA	NA	NA	14140346	14083737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_14083765_14114204_14114340_14128769_14128917_14140240
transcript_128113.known	chr8	+	2130	1	FSM	ENSMUSG00000074461.3	ENSMUST00000098916.3	2130	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGACTTGCCTTGGTCA	4307	False	NA	NA	False	NA	NA	NA	14140460	14142590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_14140500_14142600
transcript_128115.nic	chr8	+	2488	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-173	2880	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938830	14947939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
transcript_128116.known	chr8	+	6857	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	24.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTGCCATATATATGT	NA	False	NA	6	True	NA	NA	NA	14938110	14951720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_14939119_14944571_14945231_14946530
transcript_128118.known	chr8	+	5528	29	FSM	ENSMUSG00000071176.11	ENSMUST00000084207.12	5528	29	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_9	8.00541908296359	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAAGTTGCTTTTTTTCC	NA	False	NA	NA	False	AATAAA	-26	NA	14961662	15051085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_14961764_14975049_14975221_14978771_14978937_14979963_14980246_14982356_14982421_14984769_14984847_14986740_14986798_14990208_14990373_14992609_14992727_14995279_14995395_14997156_14997264_15004434_15004513_15004748_15004929_15006862_15006980_15008563_15008657_15011114_15011286_15012517_15012664_15014086_15014263_15024975_15025092_15025569_15025698_15025887_15025989_15027547_15027670_15028436_15028524_15029799_15030027_15030551_15030710_15033769_15033913_15041059_15041235_15047541_15047665_15049318
transcript_128121.known	chr8	+	5336	28	FSM	ENSMUSG00000071176.11	ENSMUST00000110800.9	5336	28	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	7.20558387346064	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAAGTTGCTTTTTTTCC	NA	False	NA	NA	False	AATAAA	-26	NA	14961737	15051085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_14961764_14975049_14975221_14978771_14978937_14979963_14980246_14982356_14982421_14984769_14984847_14986740_14986798_14990208_14990373_14995279_14995395_14997156_14997264_15004434_15004513_15004748_15004929_15006862_15006980_15008563_15008657_15011114_15011286_15012517_15012664_15014086_15014263_15024975_15025092_15025569_15025698_15025887_15025989_15027547_15027670_15028436_15028524_15029799_15030027_15030551_15030710_15033769_15033913_15041059_15041235_15047541_15047665_15049318
transcript_128124.known	chr8	+	4662	14	FSM	ENSMUSG00000039842.16	ENSMUST00000039412.15	4662	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	12.6528524276628	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGCAATAATTTTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	18645146	18853205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
transcript_128134.nnic	chr8	+	3502	13	NIC	ENSMUSG00000039842.16	novel	4662	14	NA	NA	-20	-942	combination_of_known_splicesites	FALSE	canonical	2	8	junction_12	46.4396262785231	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGAGATTTGTGTGTAC	NA	False	NA	3	True	NA	NA	NA	18645126	18852263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18851421
transcript_128145.nic	chr8	+	2364	9	ISM	ENSMUSG00000039842.16	ENSMUST00000153133.2	2998	12	-465	48305	-20	8747	5prime_fragment	FALSE	canonical	3	150	junction_4	13.9636805678159	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAGAAAGAAGAAAAGGTC	NA	False	NA	NA	False	AAGAAA	-2	NA	18645126	18691664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580
transcript_128147.known	chr8	+	2067	8	FSM	ENSMUSG00000039842.16	ENSMUST00000146819.8	2067	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	14.4391757354209	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTTGACCTGTATACC	NA	False	NA	NA	False	ATTAAA	-22	NA	18645597	18682917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531
transcript_128152.nic	chr8	+	871	5	ISM	ENSMUSG00000039842.16	ENSMUST00000146819.8	2067	8	-471	7295	-20	-6274	5prime_fragment	FALSE	canonical	3	150	junction_4	16.7388022271607	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGACAAAAGACTTCAAAAGA	NA	False	NA	NA	False	AAAACA	-9	NA	18645126	18675622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575
transcript_128153.nic	chr8	+	808	4	ISM	ENSMUSG00000039842.16	ENSMUST00000146819.8	2067	8	-471	10223	-20	-9202	5prime_fragment	FALSE	canonical	3	152	junction_1	17.5182444579612	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAGTAGAAAAAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	18645126	18672694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622
transcript_128158.known	chr8	+	2841	8	FSM	ENSMUSG00000031467.11	ENSMUST00000033847.5	2841	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	241.544266446259	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTCTTGTTTTTTCAA	NA	False	NA	15	True	AATAAA	-25	NA	18896294	18933437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929749_18931753
transcript_12817.known	chr10	+	2725	10	FSM	ENSMUSG00000020034.8	ENSMUST00000020223.8	2725	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.1308895119123	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAATCTTTTCATTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	84412489	84450223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_84412877_84420611_84420920_84422967_84423104_84425747_84425869_84426951_84427173_84430511_84430649_84440370_84440553_84440749_84440932_84444328_84444502_84449345
transcript_128170.nic	chr8	+	560	2	ISM	ENSMUSG00000031467.11	ENSMUST00000033847.5	2841	8	-22	21907	-20	-21907	5prime_fragment	FALSE	canonical	3	729	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAATATATCTAGCGAATC	NA	False	NA	NA	False	AATAAA	-6	NA	18896272	18911530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_18896795_18911492
transcript_128174.known	chr8	-	3116	7	FSM	ENSMUSG00000039814.16	ENSMUST00000152974.8	3116	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	13.3998341614945	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCATTAGTGTTAGTAT	NA	False	NA	-6	True	NA	NA	NA	19000932	18982747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000551
transcript_128175.nnic	chr8	-	2942	7	NNC	ENSMUSG00000039814.16	novel	3116	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	13.7204227340122	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCATTAGTGTTAGTAT	NA	False	NA	-6	True	NA	NA	NA	19000991	18982747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000784
transcript_128176.known	chr8	-	2838	7	FSM	ENSMUSG00000039814.16	ENSMUST00000095438.10	2838	7	0	0	0	0	multi-exon	TRUE	canonical	2	24	junction_4	7.05730511991338	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTGTTAGTATCTA	NA	False	NA	-3	True	NA	NA	NA	19000991	18982744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000891
transcript_128181.known	chr8	+	591	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTCGTGTCTGTAC	7117	False	NA	NA	False	AAGAAA	-4	NA	19542951	19543542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_19543000_19543500
transcript_128194.nnic	chr8	+	1990	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	20	-2739	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	519.250844968017	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016485	20043149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20042916_20043091
transcript_12820.known	chr10	+	4975	28	FSM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_10	22.7726281441689	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTCTGAGAGGTGATGT	NA	False	NA	22	True	NA	NA	NA	84458155	84563042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549597_84550108_84550276_84554273_84554388_84556207_84556382_84561514
transcript_128208.nnic	chr8	+	2852	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-165	-2120	multi-exon	FALSE	canonical	3	906	junction_2	214.058403245469	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGAAGTCAGTTAAG	NA	False	NA	NA	False	AATAAA	-1	NA	19834596	20043768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_128217.nnic	chr8	+	3019	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-165	-2120	multi-exon	FALSE	canonical	3	606	junction_2	335.627770007191	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGAAGTCAGTTAAG	NA	False	NA	NA	False	AATAAA	-1	NA	19834596	20043768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_128218.nnic	chr8	+	4379	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-165	-760	multi-exon	FALSE	canonical	3	606	junction_2	335.627770007191	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGGCACCATTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	19834596	20045128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_128219.nnic	chr8	+	1119	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-62	-3868	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGAGCCTCATCTTTTCT	NA	False	NA	NA	False	AGTAAA	-37	NA	20016403	20042020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_128221.nnic	chr8	+	1264	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-5	-3666	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATCTGAGTCTTGAGAT	NA	False	NA	NA	False	ATTAAA	-22	NA	20016460	20042222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_128224.nnic	chr8	+	2248	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-62	-2739	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016403	20043149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_128225.nnic	chr8	+	2867	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-62	-2120	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	31	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGAAGTCAGTTAAG	NA	False	NA	NA	False	AATAAA	-1	NA	20016403	20043768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_128231.nic	chr8	+	1233	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-9	13478	-9	-3868	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGAGCCTCATCTTTTCT	NA	False	NA	NA	False	AGTAAA	-37	NA	20016456	20042020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_128235.nic	chr8	+	2046	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	10	12646	10	-3036	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGCAATAATTGTTCAGCC	NA	False	NA	NA	False	NA	NA	NA	20016475	20042852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_128236.nic	chr8	+	2415	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-62	12349	-62	-2739	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016403	20043149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_128237.nic	chr8	+	2977	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-5	11730	-5	-2120	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGAAGTCAGTTAAG	NA	False	NA	NA	False	AATAAA	-1	NA	20016460	20043768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_128238.nic	chr8	+	4338	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-6	10370	-6	-760	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGGCACCATTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	20016459	20045128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_128251.nnic	chr8	+	1011	3	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	21	-9425	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	12	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATATTTAAGATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20016486	20036463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_20016689_20030550_20030757_20035860
transcript_128253.nic	chr8	+	1178	3	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	21	19035	21	-9425	5prime_fragment	FALSE	canonical	3	606	junction_2	138	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATATTTAAGATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20016486	20036463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_20016689_20030550_20030924_20035860
transcript_128257.nic	chr8	+	388	2	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	0	24783	0	-15173	5prime_fragment	FALSE	canonical	3	882	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGGAGAACTACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	20016465	20030715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_20016689_20030550
transcript_128258.nic	chr8	+	772	2	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-62	24461	-62	-14851	5prime_fragment	FALSE	canonical	3	882	junction_1	0	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGACAGAACAACAGTAGG	NA	False	NA	NA	False	NA	NA	NA	20016403	20031037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_20016689_20030550
transcript_128259.nic	chr8	+	850	2	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-62	24383	-62	-14773	5prime_fragment	FALSE	canonical	3	882	junction_1	0	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAACAAGAATGATCTACT	NA	False	NA	NA	False	AGTAAA	-24	NA	20016403	20031115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_20016689_20030550
transcript_128282.nnic	chr8	+	741	2	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21097	-7299	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGACAGAACAACGGTAGG	5292	False	NA	NA	False	NA	NA	NA	20555602	20577038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_20555835_20576529
transcript_128286.nnic	chr8	+	2531	6	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-13	-2153	multi-exon	FALSE	non_canonical	0	0	junction_5	443.975224533982	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGAAGTCAGTTAAG	NA	False	NA	NA	False	NA	NA	NA	20697971	20725113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149_20724256_20724431
transcript_128289.nnic	chr8	+	1898	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-125	-3074	multi-exon	FALSE	canonical	3	434	junction_2	317.198183317622	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGCAATAATTGTTCAGCC	NA	False	NA	NA	False	NA	NA	NA	20697859	20724192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
transcript_128290.nnic	chr8	+	2181	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-111	-2777	multi-exon	FALSE	canonical	3	434	junction_2	317.198183317622	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20697873	20724489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
transcript_128291.nnic	chr8	+	2821	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-127	-2153	multi-exon	FALSE	canonical	3	434	junction_2	317.198183317622	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGAAGTCAGTTAAG	NA	False	NA	NA	False	NA	NA	NA	20697857	20725113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
transcript_128292.nnic	chr8	+	4246	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-192	-793	multi-exon	FALSE	canonical	3	434	junction_2	317.198183317622	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTACGTGTGGCACCATT	NA	False	NA	NA	False	AATAAA	-22	NA	20697792	20726473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
transcript_128293.nnic	chr8	+	4367	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-111	-591	multi-exon	FALSE	canonical	3	434	junction_2	317.198183317622	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCAGGGGGTAAATTTAC	NA	False	NA	NA	False	AATAAA	-22	NA	20697873	20726675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
transcript_128297.nnic	chr8	+	2051	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-111	-3074	multi-exon	FALSE	canonical	3	200	junction_2	399.990234255788	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGCAATAATTGTTCAGCC	NA	False	NA	NA	False	NA	NA	NA	20697873	20724192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120_20721241_20723149
transcript_128298.nnic	chr8	+	2972	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-111	-2153	multi-exon	FALSE	canonical	3	200	junction_2	399.990234255788	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGAAGTCAGTTAAG	NA	False	NA	NA	False	NA	NA	NA	20697873	20725113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120_20721241_20723149
transcript_128299.nnic	chr8	+	4344	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-123	-793	multi-exon	FALSE	canonical	3	200	junction_2	399.990234255788	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTACGTGTGGCACCATT	NA	False	NA	NA	False	AATAAA	-22	NA	20697861	20726473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120_20721241_20723149
transcript_128303.nnic	chr8	+	1271	4	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-192	288	multi-exon	FALSE	canonical	3	112	junction_3	226.010324247957	66	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGGCATTCAAAGTTAG	NA	False	NA	NA	False	AATAAA	-12	NA	20697792	20727554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717493_20727081
transcript_128307.nnic	chr8	+	1370	4	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-124	288	multi-exon	FALSE	canonical	3	112	junction_3	241.687125570781	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGGCATTCAAAGTTAG	NA	False	NA	NA	False	AATAAA	-12	NA	20697860	20727554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717493_20727081
transcript_128321.nnic	chr8	+	711	2	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17391	-14851	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGACAGAACAACAGTAGG	5821	False	NA	NA	False	NA	NA	NA	21090221	21107936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_21090445_21107448
transcript_128322.known	chr8	+	411	2	FSM	ENSMUSG00000074446.4	ENSMUST00000098899.4	411	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTGTGTTCACATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	21545062	21546032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_21545269_21545827
transcript_128323.known	chr8	+	377	2	FSM	ENSMUSG00000074442.5	ENSMUST00000098896.5	377	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTGTGTTCACATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	21681629	21682565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_21681802_21682360
transcript_128324.known	chr8	+	4960	4	FSM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.93310961716756	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGGCTCCCTTTGGTG	NA	False	NA	5	True	NA	NA	NA	22550736	22561643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_22550787_22551901_22552133_22555015_22555948_22557896
transcript_128331.known	chr8	-	2050	16	FSM	ENSMUSG00000031478.17	ENSMUST00000110730.10	2050	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	9.555917305814	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTGTGCTGGTTTTCAA	NA	False	NA	2	True	AATACA	-17	NA	22656451	22618298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622216_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
transcript_128333.known	chr8	-	2593	9	FSM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_6	17.1973835219198	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAACAAATGAGAGTTA	NA	False	NA	NA	False	NA	NA	NA	22675835	22658175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
transcript_128335.nnic	chr8	-	2319	9	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	283	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	79.0283770236995	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCATTGATTGACTTATT	NA	False	NA	-1	True	AATAAA	-26	NA	22675552	22658460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675405
transcript_128341.nic	chr8	-	1890	6	ISM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	-17	6441	-17	0	5prime_fragment	FALSE	canonical	3	249	junction_3	10.2683981223947	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTTAGAAAATAGATACC	NA	False	NA	NA	False	NA	NA	NA	22675852	22664616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
transcript_128345.nic	chr8	-	284	3	ISM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	-17	9531	-17	-3090	5prime_fragment	FALSE	canonical	3	261	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTGTGAAACTCAAAACAGA	NA	False	NA	NA	False	NA	NA	NA	22675852	22667706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_22667756_22669529_22669612_22675699
transcript_128347.known	chr8	+	3574	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	0	0	0	0	multi-exon	TRUE	canonical	3	316	junction_5	36.370219952707	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAATTTTTCTGTTTT	NA	False	NA	9	True	GATAAA	-22	NA	22682824	22710859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
transcript_128354.nic	chr8	+	618	6	ISM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	-48	12920	-48	-10709	5prime_fragment	FALSE	canonical	3	316	junction_5	36.7564960245125	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCGATAAAAACATTTCTGAG	NA	False	NA	NA	False	AAAAAG	-9	NA	22682776	22697939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872
transcript_128355.nic	chr8	+	486	5	ISM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	-48	14042	-48	-11831	5prime_fragment	FALSE	canonical	3	347	junction_4	26.8840101175401	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACACAGAGAAGATGGGAG	NA	False	NA	NA	False	AAGAAA	-1	NA	22682776	22696817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792
transcript_128356.known	chr8	+	4422	5	FSM	ENSMUSG00000031480.16	ENSMUST00000069828.10	4422	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4790199457749	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCGTGTATTTCAGAACT	NA	False	NA	NA	False	AATATA	-24	NA	22717328	22751350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_22717446_22728470_22728614_22733012_22733973_22742168_22742328_22748307
transcript_128358.known	chr8	+	3276	4	FSM	ENSMUSG00000031480.16	ENSMUST00000160585.2	3276	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTTCTCAGTGATGACTGC	NA	False	NA	NA	False	ATTAAA	-18	NA	22717360	22750395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_22717446_22728470_22728614_22733012_22733973_22748307
transcript_128362.nnic	chr8	-	3907	7	NNC	ENSMUSG00000031482.10	novel	3430	7	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	86.8192566965033	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTCTGGTCGTAGTGT	NA	False	NA	-6	True	NA	NA	NA	22888608	22865566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22887973
transcript_128363.known	chr8	-	3430	7	FSM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_4	26.1002341411379	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTCTGGTCGTAGTGT	NA	False	NA	-6	True	NA	NA	NA	22888613	22865566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22888455
transcript_128365.nnic	chr8	-	3316	7	NNC	ENSMUSG00000031482.10	novel	3430	7	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	87.5893194909567	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTCTGGTCGTAGTGT	NA	False	NA	-6	True	NA	NA	NA	22888642	22865566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879972_22880089_22885728_22885844_22888455
transcript_128374.known	chr8	+	1515	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTTGTGTAATTTGC	NA	False	NA	NA	False	NA	NA	NA	22901376	22919681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
transcript_128379.known	chr8	+	2625	5	FSM	ENSMUSG00000031533.5	ENSMUST00000211083.2	2625	5	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_2	50.8551865594848	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTGTGTCGTGTGAGA	NA	False	NA	NA	False	NA	NA	NA	22901413	22916212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362
transcript_128381.nic	chr8	+	779	4	ISM	ENSMUSG00000031533.5	ENSMUST00000211083.2	2625	5	-5	4747	-5	-4747	5prime_fragment	FALSE	canonical	3	683	junction_2	56.4052795007307	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTCAGGCTTTGTCATC	NA	False	NA	21	True	NA	NA	NA	22901408	22911465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325
transcript_128398.known	chr8	+	3566	11	FSM	ENSMUSG00000037656.10	ENSMUST00000067786.9	3566	11	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_6	45.0493063209635	1319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTTCTGACGTCTTTTT	NA	False	NA	15	True	AATAAA	-20	NA	22966803	23059628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_22966942_23025034_23025589_23028819_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902_23051495_23054044_23054231_23055629_23055715_23058262
transcript_128411.known	chr8	-	1402	4	FSM	ENSMUSG00000031534.16	ENSMUST00000033935.16	1402	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	20.3960780543711	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCCTTGCATCATTTTG	NA	False	NA	-1	True	NA	NA	NA	22966898	22952630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22966521
transcript_128416.known	chr8	-	1354	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	0	0	0	0	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	-11	True	AATAAA	-22	NA	23083774	23067101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
transcript_12842.known	chr10	+	3069	10	FSM	ENSMUSG00000035620.16	ENSMUST00000038523.15	3069	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	27.2890336586822	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTGTGTGTGTGTTTC	NA	False	NA	22	True	AATAAA	-23	NA	84753479	84852311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84837645_84837766_84850939
transcript_128424.known	chr8	-	517	5	FSM	ENSMUSG00000008892.13	ENSMUST00000210096.2	517	5	0	0	0	0	multi-exon	FALSE	canonical	3	2053	junction_4	157.696504400066	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCAGGTCTATGTGGG	NA	False	NA	NA	False	NA	NA	NA	23083727	23071934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
transcript_128426.known	chr8	-	1423	9	FSM	ENSMUSG00000008892.13	ENSMUST00000179233.2	1423	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	726.253560662528	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTAGTAGTGGTTGGT	NA	False	NA	0	True	AATAAA	-33	NA	23083829	23067090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077565_23077619_23078741_23078811_23083699
transcript_12843.known	chr10	+	2909	9	FSM	ENSMUSG00000035620.16	ENSMUST00000095385.5	2909	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	11.5325625946708	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTGTGTGTGTGTTTC	NA	False	NA	22	True	AATAAA	-23	NA	84753519	84852311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84850939
transcript_128430.known	chr8	-	1201	14	FSM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_8	16.1157058899497	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTTAACAAATGTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	23143434	23118141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
transcript_128442.known	chr8	-	3536	22	FSM	ENSMUSG00000031537.16	ENSMUST00000125314.8	3536	22	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	24.8396216299904	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAGTCATGTCATTG	NA	False	NA	-1	True	NA	NA	NA	23196556	23149228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159742_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
transcript_128452.known	chr8	-	3977	21	FSM	ENSMUSG00000031537.16	ENSMUST00000063401.10	3977	21	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_9	16.2802794816305	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCAACTACTACCCTACT	NA	False	NA	NA	False	AAAAAG	-16	NA	23196605	23149783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
transcript_12846.known	chr10	+	3616	3	FSM	ENSMUSG00000060935.7	ENSMUST00000095383.6	3616	3	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	7	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGAATGTTTCATAAAG	NA	False	NA	17	True	AATAAA	-17	NA	84938490	84953449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_84938862_84946662_84946730_84950271
transcript_128467.nic	chr8	-	2900	12	ISM	ENSMUSG00000031537.16	ENSMUST00000146212.8	4845	20	-16	9757	-5	-2103	5prime_fragment	FALSE	canonical	3	74	junction_1	13.6078489747281	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCGAATTCTCACTATATA	NA	False	NA	NA	False	NA	NA	NA	23196610	23160129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
transcript_12847.known	chr10	-	1567	3	FSM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTATTCCAAAACATCAT	NA	False	NA	2	True	AATAAA	-23	NA	84963891	84955296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_84956679_84962231_84962351_84963825
transcript_128476.known	chr8	-	601	3	FSM	ENSMUSG00000031537.16	ENSMUST00000150214.2	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	54.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATTTTATTTTTTGA	NA	False	NA	NA	False	AATAAA	-36	NA	23196541	23192467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23192890_23196097_23196221_23196485
transcript_128477.known	chr8	-	3587	8	FSM	ENSMUSG00000031537.16	ENSMUST00000150259.8	3587	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	13.3064354539372	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAACAAAAAAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	23196556	23165999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
transcript_128478.known	chr8	+	2525	14	FSM	ENSMUSG00000031538.7	ENSMUST00000033941.7	2525	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.12619614785927	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTGGTGCATATCCATG	NA	False	NA	NA	False	AATAAA	-24	NA	23247762	23272860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_23247845_23257095_23257184_23258461_23258505_23261709_23261848_23262221_23262333_23262651_23262827_23263632_23263725_23265580_23265756_23266806_23266893_23268118_23268315_23268428_23268566_23268670_23268812_23270441_23270606_23271963
transcript_128479.known	chr8	-	3417	9	FSM	ENSMUSG00000031539.7	ENSMUST00000163739.3	3417	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	7.29618907375624	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	False	NA	-1	True	AATAAA	-18	NA	23295620	23277369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295529
transcript_12848.known	chr10	-	477	2	FSM	ENSMUSG00000049038.4	ENSMUST00000214607.2	477	2	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGGAAGAAACCTACGTT	NA	False	NA	NA	False	NA	NA	NA	84962441	84956411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_84956679_84962231
transcript_128480.known	chr8	-	3373	9	FSM	ENSMUSG00000031539.7	ENSMUST00000210656.2	3373	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	1.96452920568771	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	False	NA	-1	True	AATAAA	-18	NA	23295638	23277369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295591
transcript_128485.known	chr8	-	1351	6	FSM	ENSMUSG00000031539.7	ENSMUST00000210148.2	1351	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	1.89736659610103	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACTCCAATGCAGTGAG	NA	False	NA	NA	False	AATAAA	-19	NA	23295638	23282302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295591
transcript_128487.known	chr8	+	9113	18	FSM	ENSMUSG00000031540.15	ENSMUST00000044331.7	9113	18	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_7	4.68894009020697	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTTGCCTGTGGAA	NA	False	NA	9	True	AATAAA	-21	NA	23349564	23433275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_23349649_23351532_23351619_23351903_23352818_23393123_23393233_23397661_23397778_23398258_23398341_23400147_23400284_23401675_23401993_23404284_23404404_23409340_23409457_23413530_23413673_23415296_23415459_23416392_23416487_23419231_23419464_23420180_23420395_23422130_23422731_23425495_23425815_23428004
transcript_128492.known	chr8	+	9041	17	FSM	ENSMUSG00000031540.15	ENSMUST00000110696.8	9041	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	4.83476990145343	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTTGCCTGTGGAA	NA	False	NA	9	True	AATAAA	-21	NA	23349550	23433275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_23349649_23351903_23352818_23393123_23393233_23397661_23397778_23398258_23398341_23400147_23400284_23401675_23401993_23404284_23404404_23409340_23409457_23413530_23413673_23415296_23415459_23416392_23416487_23419231_23419464_23420180_23420395_23422130_23422731_23425495_23425815_23428004
transcript_128494.nic	chr8	+	3742	16	ISM	ENSMUSG00000031540.15	ENSMUST00000044331.7	9113	18	-220	10546	-206	9068	5prime_fragment	FALSE	canonical	2	9	junction_7	4.56362429069996	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGATGCATCTTTGTGTTC	NA	False	NA	NA	False	AAGAAA	-1	NA	23349344	23422729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_23349649_23351532_23351619_23351903_23352818_23393123_23393233_23397661_23397778_23398258_23398341_23400147_23400284_23401675_23401993_23404284_23404404_23409340_23409457_23413530_23413673_23415296_23415459_23416392_23416487_23419231_23419464_23420180_23420395_23422130
transcript_128498.nic	chr8	+	1885	9	ISM	ENSMUSG00000031540.15	ENSMUST00000044331.7	9113	18	-7	28957	-7	-9343	5prime_fragment	FALSE	canonical	2	9	junction_7	4.84606799374503	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAACGGCTTTTTGGGA	NA	False	NA	NA	False	AAGAAA	-2	NA	23349557	23404318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_23349649_23351532_23351619_23351903_23352818_23393123_23393233_23397661_23397778_23398258_23398341_23400147_23400284_23401675_23401993_23404284
transcript_128501.known	chr8	+	2238	3	FSM	ENSMUSG00000063672.8	ENSMUST00000071588.8	2238	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATCCATAGACCAAATTG	NA	False	NA	NA	False	AATAAA	-44	NA	23643284	23648964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_23643986_23646216_23646387_23647597
transcript_128504.known	chr8	-	5518	13	FSM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_11	21.3085793884894	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTTGATTTATTAAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	23698362	23661280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
transcript_12851.known	chr10	-	3026	13	FSM	ENSMUSG00000020038.11	ENSMUST00000020227.11	3026	13	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_12	27.3651999200932	506	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGTGTACTTGTGTTCAT	NA	False	NA	-5	True	ATTAAA	-19	NA	85020928	84967563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_84968172_84968914_84969023_84969105_84969178_84978879_84979033_84979502_84979706_84980017_84980170_84982207_84982520_84982599_84982741_84983770_84983860_84984477_84984663_84987076_84987220_84992949_84993059_85020177
transcript_128512.known	chr8	-	2316	7	FSM	ENSMUSG00000031545.7	ENSMUST00000211260.2	2316	7	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_5	17.4992063312089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTGGGGGAGTTTGT	NA	False	NA	NA	False	AATAAA	-17	NA	23698361	23669986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
transcript_128514.known	chr8	-	1349	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCAAATGTCTTTTTTT	NA	False	NA	-22	True	AAAACA	-3	NA	23727675	23716631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
transcript_128524.known	chr8	-	1792	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	0	0	0	0	multi-exon	TRUE	canonical	3	715	junction_5	234.329170185873	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	False	NA	-19	True	AATAAA	-1	NA	23747090	23731361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
transcript_128527.known	chr8	-	1945	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	0	0	0	0	multi-exon	FALSE	canonical	3	1223	junction_2	41.2946727799119	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCCTCTCTTGTCT	NA	False	NA	-26	True	AGTAAA	-10	NA	23747037	23731368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
transcript_128528.known	chr8	-	4771	3	FSM	ENSMUSG00000015341.18	ENSMUST00000211602.2	4771	3	0	0	0	0	multi-exon	FALSE	canonical	3	715	junction_2	306.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATGATGGTATTATTTGG	NA	False	NA	NA	False	NA	NA	NA	23747082	23735826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_23740418_23746689_23746823_23747035
transcript_128540.known	chr8	+	4372	3	FSM	ENSMUSG00000031548.8	ENSMUST00000033952.8	4372	3	0	0	0	0	multi-exon	FALSE	canonical	3	1172	junction_2	95.5	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGTGAGTTGTGATTGAC	NA	False	NA	24	True	ACTAAA	-17	NA	23901517	23939648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_23902345_23907345_23907424_23936181
transcript_128550.known	chr8	-	3834	23	FSM	ENSMUSG00000031555.16	ENSMUST00000084032.6	3834	23	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_3	30.3693856832314	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAACATTTACAAC	NA	False	NA	NA	False	TTTAAA	-30	NA	25506828	25439668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_25441027_25445947_25446016_25452875_25452902_25452954_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
transcript_128553.nnic	chr8	-	4200	22	NNC	ENSMUSG00000031555.16	novel	4044	22	NA	NA	-183	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	31.0462313449736	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCGTCCTCTTTATA	NA	False	NA	NA	False	AATAAA	-35	NA	25507126	25439626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_25441027_25445947_25446016_25452902_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
transcript_128554.known	chr8	-	3985	22	FSM	ENSMUSG00000031555.16	ENSMUST00000084035.12	3985	22	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	31.0462313449736	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCGTCCTCTTTATA	NA	False	NA	NA	False	AATAAA	-35	NA	25506938	25439626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_25441027_25445947_25446016_25452929_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
transcript_128560.known	chr8	+	1281	4	FSM	ENSMUSG00000031556.7	ENSMUST00000033961.7	1281	4	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	26.3185612575358	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGAGTATTTC	NA	False	NA	14	True	AATAAA	-14	NA	25507226	25513276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_25507609_25508081_25508170_25510454_25510571_25512581
transcript_128563.known	chr8	-	1158	12	FSM	ENSMUSG00000031557.17	ENSMUST00000098866.11	1158	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAGAAGAGAAAAGAGGTC	5825	False	NA	NA	False	NA	NA	NA	25591787	25532959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591662
transcript_128564.known	chr8	-	5176	12	FSM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_11	35.6008635794598	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTTGTGTGTTTTCCTG	9688	False	NA	NA	False	AATAAA	-19	NA	25592392	25529159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25592049
transcript_128570.known	chr8	-	7788	13	FSM	ENSMUSG00000065954.12	ENSMUST00000084030.6	7788	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	24.1986856851542	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGGGTGTGTTGTCTTCC	NA	False	NA	0	True	AATAAA	-21	NA	25691558	25644567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25671838_25672947_25690106_25690223_25691137
transcript_128577.known	chr8	-	6471	11	FSM	ENSMUSG00000065954.12	ENSMUST00000084512.11	6471	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	23.6550206087418	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGGGTGTGTTGTCTTCC	NA	False	NA	0	True	AATAAA	-21	NA	25691465	25644567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25691137
transcript_128578.nic	chr8	-	3137	11	NIC	ENSMUSG00000065954.12	novel	6471	11	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	20.3492014585339	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAGAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25730980	25647744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25730809
transcript_128580.nic	chr8	-	2093	8	ISM	ENSMUSG00000065954.12	ENSMUST00000084030.6	7788	13	-61	13017	-61	0	5prime_fragment	FALSE	canonical	0	0	junction_7	24.8522162605516	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAATGGAAGAAGAAAT	NA	False	NA	NA	False	ACTAAA	-12	NA	25691619	25657584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25671838_25672947_25690106_25690223_25691137
transcript_128583.nic	chr8	-	861	6	ISM	ENSMUSG00000065954.12	ENSMUST00000084512.11	6471	11	-146	13017	-53	0	5prime_fragment	FALSE	canonical	0	0	junction_5	27.4124059505911	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAATGGAAGAAGAAAT	NA	False	NA	NA	False	ACTAAA	-12	NA	25691611	25657584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25691137
transcript_128584.nic	chr8	-	558	6	NIC	ENSMUSG00000065954.12	novel	1661	9	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	22.494443758404	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAATGGAAGAAGAAAT	NA	False	NA	NA	False	ACTAAA	-12	NA	25730980	25657584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25730809
transcript_128587.known	chr8	+	432	1	FSM	ENSMUSG00000074412.5	ENSMUST00000098864.5	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTGACAATGAAAACACA	NA	False	NA	NA	False	AAGAAA	-19	NA	25944288	25944720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_25944300_25944700
transcript_12859.known	chr10	+	952	1	FSM	ENSMUSG00000050490.8	ENSMUST00000079684.7	952	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85149351	85150303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_85149400_85150300
transcript_128591.known	chr8	+	4046	18	FSM	ENSMUSG00000031565.19	ENSMUST00000117179.9	4046	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	66.5202833494101	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTTTATCCTGGGCGT	NA	False	NA	11	True	AATAAA	-14	NA	26008810	26064797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047831_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056930_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
transcript_128594.known	chr8	+	5025	18	FSM	ENSMUSG00000031565.19	ENSMUST00000084027.13	5025	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	63.8572694769507	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTACTTGACTCACTGCT	NA	False	NA	81	True	NA	NA	NA	26008774	26065734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26009446_26022265_26022445_26045523_26045791_26047746_26047837_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056930_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
transcript_12860.known	chr10	+	5788	17	FSM	ENSMUSG00000020042.16	ENSMUST00000105307.8	5788	17	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_1	8.15379512865022	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCATCCTCTTTATGGT	NA	False	NA	13	True	ATTAAA	-18	NA	85222677	85496156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_85224343_85382305_85382456_85397368_85397574_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
transcript_128618.known	chr8	-	2126	11	FSM	ENSMUSG00000037363.10	ENSMUST00000079160.8	2126	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTCGAATGGCTTCC	2349	False	NA	NA	False	CATAAA	-15	NA	26087529	26068505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26068821_26069735_26069811_26070331_26070425_26071688_26071803_26075364_26075485_26076622_26076824_26077311_26077450_26082467_26082612_26083734_26084183_26086377_26086462_26087135
transcript_128619.known	chr8	+	10105	24	FSM	ENSMUSG00000054823.18	ENSMUST00000142395.8	10105	24	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_15	30.6634885068579	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATGGGCTGGTTCTTTA	9685	False	NA	19	True	AATAAA	-23	NA	26092299	26209694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26168731_26168863_26169881_26170011_26170663_26170791_26172514_26172713_26173167_26173339_26181041_26181189_26184715_26184873_26188760_26188964_26189938_26190052_26190478_26190749_26196551_26196669_26199089_26199232_26200699_26200807_26203384_26203587_26204185
transcript_128621.known	chr8	+	5261	23	FSM	ENSMUSG00000054823.18	ENSMUST00000139966.8	5261	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_14	32.1331488683936	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGCCTCTTGAAAACAAA	9685	False	NA	NA	False	NA	NA	NA	26092299	26204997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26168731_26168863_26169881_26170011_26170663_26170791_26172514_26172713_26173167_26173339_26184715_26184873_26188760_26188964_26189938_26190052_26190478_26190749_26196551_26196669_26199089_26199232_26200699_26200807_26203384_26203587_26204185
transcript_128624.known	chr8	+	3652	10	FSM	ENSMUSG00000054823.18	ENSMUST00000146919.8	3652	10	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_9	30.118285328204	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTTTTTTTTCCCA	9685	False	NA	15	True	TTTAAA	-20	NA	26092299	26167988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26166718
transcript_128627.known	chr8	+	3818	8	FSM	ENSMUSG00000054823.18	ENSMUST00000136107.9	3818	8	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	11.0435131943358	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTTACATATTTACAAAAT	9685	False	NA	NA	False	AATAAA	-26	NA	26092299	26164932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349
transcript_128629.known	chr8	+	2416	6	FSM	ENSMUSG00000054823.18	ENSMUST00000143445.2	2416	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	11.4960862905599	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTGCCTGCTGATT	9720	False	NA	NA	False	ATTAAA	-13	NA	26092334	26153615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756
transcript_128631.nic	chr8	+	1171	2	ISM	ENSMUSG00000054823.18	ENSMUST00000143445.2	2416	6	-105	22375	-70	-22375	5prime_fragment	FALSE	canonical	3	98	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGAAAGGAAAAGAGGAAA	9615	False	NA	NA	False	AATGAA	-38	NA	26092229	26131240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_26092753_26130592
transcript_128632.known	chr8	+	1539	8	FSM	ENSMUSG00000031570.18	ENSMUST00000139836.8	1539	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	28.6997120087947	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210090	26214914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26213057_26213141_26214106
transcript_128633.known	chr8	+	1419	7	FSM	ENSMUSG00000031570.18	ENSMUST00000124764.8	1419	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	20.3141986469235	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210087	26214914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
transcript_128634.known	chr8	+	1483	7	FSM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.9269164205337	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210063	26214914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
transcript_128637.known	chr8	+	2099	6	FSM	ENSMUSG00000031570.18	ENSMUST00000133117.8	2099	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.0545674132471	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210090	26214914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26212628_26214106
transcript_12864.known	chr10	+	3945	15	FSM	ENSMUSG00000020042.16	ENSMUST00000105306.3	3945	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.689582743498	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCATCCTCTTTATGGT	NA	False	NA	13	True	ATTAAA	-18	NA	85434264	85496156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_85434442_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
transcript_128644.known	chr8	+	921	4	FSM	ENSMUSG00000031570.18	ENSMUST00000138879.8	921	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	19.2238278070616	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGACCTTTGTAGCT	NA	False	NA	NA	False	AATATA	-40	NA	26210126	26212178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26210403_26210581_26210673_26211200_26211265_26211688
transcript_128647.known	chr8	-	4246	18	FSM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_17	11.1150012413475	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGGCCTTATCTATC	NA	False	NA	-3	True	AATAAA	-22	NA	26244308	26215372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244212
transcript_128648.nic	chr8	-	4304	18	NIC	ENSMUSG00000061313.11	novel	4246	18	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	1	18	junction_17	11.4631952042464	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGGCCTTATCTATC	NA	False	NA	-3	True	AATAAA	-22	NA	26244447	26215372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
transcript_128655.known	chr8	-	4876	5	FSM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_2	10.356157588604	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTTTTCTCTCTAGCA	NA	False	NA	NA	False	AATAAA	-25	NA	26275315	26254565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26258438_26259309_26259565_26261106_26261362_26267450_26267556_26274926
transcript_128663.nic	chr8	-	712	4	ISM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	-153	25401	-20	1373	5prime_fragment	FALSE	canonical	3	20	junction_3	20.2868320729373	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAATCTCCAAACAGAGAA	NA	False	NA	NA	False	NA	NA	NA	26244461	26240773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_26240820_26242126_26242318_26242974_26243201_26244212
transcript_128664.known	chr8	-	2266	16	FSM	ENSMUSG00000061313.11	ENSMUST00000211688.4	2266	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	17.3837727652991	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTTCCTTCTCAGCTAC	NA	False	NA	NA	False	NA	NA	NA	26244624	26217344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26228241_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
transcript_128670.known	chr8	-	2506	2	FSM	ENSMUSG00000037316.10	ENSMUST00000209948.2	2506	2	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	26275226	26265349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26267556_26274926
transcript_128671.nnic	chr8	+	1375	5	NNC	ENSMUSG00000037296.8	novel	2663	4	NA	NA	-43	413	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	192.3856803403	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTTCTGGTGGAGAGT	8397	False	NA	24	True	AATAAA	-27	NA	26275272	26292565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_26275746_26282184_26282254_26283704_26283821_26286980_26287088_26291955
transcript_128673.known	chr8	+	2663	4	FSM	ENSMUSG00000037296.8	ENSMUST00000038421.8	2663	4	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_2	35.9660333586504	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAGAGAAGACACAT	8440	False	NA	NA	False	NA	NA	NA	26275315	26294003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26275746_26282184_26282254_26283704_26283821_26291955
transcript_12868.known	chr10	+	2572	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCACCTCACTTTGACT	NA	False	NA	8	True	AATAAA	-19	NA	85707694	85724960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
transcript_128683.known	chr8	-	2300	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110609.8	2300	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_15	868.905733283728	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCTTGTATGGTACTTG	NA	False	NA	-22	True	AATAAA	-9	NA	26330485	26306913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330396
transcript_128684.known	chr8	-	3307	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAATGTTTGAATGAC	NA	False	NA	NA	False	NA	NA	NA	26330815	26306023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
transcript_128685.known	chr8	-	2337	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	0	0	0	0	multi-exon	TRUE	canonical	3	3119	junction_12	186.058007680998	1945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTACTTGGCTTCACTGG	NA	False	NA	-12	True	AATAAA	-19	NA	26337722	26306903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
transcript_1287.known	chr1	-	5385	12	FSM	ENSMUSG00000070939.10	ENSMUST00000186694.7	5385	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_11	7.4512187699077	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTACTGGTTTCCACAGA	9974	False	NA	41	True	AATAAA	-13	NA	43131889	43086379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_43088996_43090717_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43131540
transcript_128731.known	chr8	-	3702	1	FSM	ENSMUSG00000031575.19	ENSMUST00000211188.2	3702	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAGAAAATCAAACTGA	NA	False	NA	NA	False	CATAAA	-34	NA	26323573	26319871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26319900_26323600
transcript_128733.nnic	chr8	-	2094	18	NNC	ENSMUSG00000037260.9	novel	485	5	NA	NA	-30	1986	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_1	29.6162304702411	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGATTTTTTAAAATT	NA	False	NA	NA	False	NA	NA	NA	26466811	26432494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_26432728_26436263_26436377_26436474_26436546_26437961_26438040_26441996_26442084_26443308_26443436_26444633_26444756_26445701_26445818_26447217_26447379_26449610_26449642_26450853_26450931_26453382_26453487_26454821_26454892_26458390_26458461_26461074_26461197_26461593_26461731_26462869_26462986_26466552
transcript_128734.known	chr8	-	2694	18	FSM	ENSMUSG00000037260.9	ENSMUST00000037609.8	2694	18	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_10	15.0390495171943	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCGTTACAGCTCTGTCT	NA	False	NA	NA	False	AATATA	-20	NA	26466781	26434480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26435344_26436263_26436377_26436474_26436546_26437961_26438040_26441996_26442084_26443308_26443436_26444633_26444756_26445701_26445818_26447217_26447379_26449610_26449642_26450853_26450931_26453382_26453487_26454821_26454892_26458390_26458461_26461074_26461197_26461593_26461731_26462869_26462986_26466552
transcript_128744.nnic	chr8	-	2986	6	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	-20	-825	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	45.3431361950185	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCCCTGTGGTGCTGGC	NA	False	NA	NA	False	AATAAA	-11	NA	26484181	26471456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_26473673_26476273_26476561_26477522_26477669_26479193_26479372_26479677_26479770_26484114
transcript_128746.nnic	chr8	-	3292	5	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	-20	-825	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	38.9711431702997	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCCCTGTGGTGCTGGC	NA	False	NA	NA	False	AATAAA	-11	NA	26484181	26471456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_26473673_26476273_26476561_26477522_26477669_26479193_26479770_26484114
transcript_128748.known	chr8	-	3613	5	FSM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	28.3681159050086	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAATGGAATTATTCAGC	NA	False	NA	NA	False	NA	NA	NA	26484161	26470631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479770_26484114
transcript_128756.known	chr8	-	1930	9	FSM	ENSMUSG00000015994.11	ENSMUST00000016138.11	1930	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_5	99.1573875210516	1257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATTGGTCCTGTTTTTCT	NA	False	NA	NA	False	ATTAAA	-5	NA	26505678	26488749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117_26501233_26503497_26503584_26505408
transcript_128759.known	chr8	-	12836	22	FSM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	10.5632744184703	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGCTCGTTTTTTCTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	26609252	26511448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_26522059_26524958_26525031_26525160_26525266_26528049_26528151_26529696_26529780_26534267_26534303_26538279_26538368_26549267_26549409_26551404_26551475_26557877_26557966_26558586_26558698_26560101_26560304_26561085_26561227_26562284_26562449_26563627_26563712_26564895_26564959_26572541_26572610_26578087_26578221_26583684_26583736_26585785_26585859_26600763_26600850_26608985
transcript_128770.known	chr8	+	1000	8	FSM	ENSMUSG00000013878.19	ENSMUST00000209707.2	1000	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	23.7469654344916	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGTTTGGAATTCTG	NA	False	NA	NA	False	NA	NA	NA	26609415	26630995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26609629_26610472_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
transcript_128782.known	chr8	+	1026	7	FSM	ENSMUSG00000013878.19	ENSMUST00000153528.8	1026	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	26.5560204515327	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAAGGATCCATGGCA	NA	False	NA	NA	False	TATAAA	-4	NA	26609410	26631152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26609629_26610467_26610592_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
transcript_128784.known	chr8	+	2295	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	13	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGCCCTGCTTTTTT	NA	False	NA	7	True	ATTAAA	-18	NA	26648168	26654179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26648550_26650802_26650999_26652461
transcript_128786.known	chr8	+	966	5	FSM	ENSMUSG00000013878.19	ENSMUST00000110575.8	966	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	16.3152535990097	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	26609503	26619574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_26609629_26610467_26610592_26613874_26614016_26615931_26616008_26619074
transcript_128793.known	chr8	+	4838	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTTTTTCATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	27513826	27530356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
transcript_128798.nic	chr8	+	4191	12	NIC	ENSMUSG00000031483.9	novel	4838	12	NA	NA	7	-891	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	86.8177534496809	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACCAGTAGATTGGAGGA	NA	False	NA	35	True	AATAAA	-32	NA	27513841	27529465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_27514194_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
transcript_128803.nnic	chr8	+	2661	9	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	-87	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	86.0112637972493	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTATGCGTGTGGGTGT	NA	False	NA	23	True	AATAAA	-15	NA	27532495	27546158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544055_27545081
transcript_128808.known	chr8	+	3603	8	FSM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	11.5881713089561	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	27532582	27546160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
transcript_128815.known	chr8	+	5767	5	FSM	ENSMUSG00000031485.16	ENSMUST00000209525.2	5767	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	15.0416089564913	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGGTGTGATGAGTGAAT	NA	False	NA	13	True	ATTAAA	-15	NA	27532588	27544595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201
transcript_128822.known	chr8	+	5760	19	FSM	ENSMUSG00000031486.16	ENSMUST00000033876.14	5760	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	8.55699843532896	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCGCCCACCCATGGTC	NA	False	NA	NA	False	ATTAAA	-26	NA	27575625	27613464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_27576240_27588813_27588886_27599355_27599428_27599728_27599801_27599968_27600041_27600462_27600627_27601079_27601294_27602370_27602536_27603313_27603513_27604107_27604258_27604372_27604535_27605264_27605490_27605682_27605903_27607343_27607544_27608751_27608880_27609161_27609286_27609733_27609880_27610474_27610565_27610793
transcript_128824.nic	chr8	+	2076	8	ISM	ENSMUSG00000031486.16	ENSMUST00000178514.8	5129	16	-98	10410	-98	-8598	5prime_fragment	FALSE	canonical	3	17	junction_4	4.03049599419025	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATATTGTGGCAATTAGTG	NA	False	NA	NA	False	AATAAA	-16	NA	27575512	27603053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_27576240_27588813_27588886_27599355_27599428_27599728_27599801_27599968_27600041_27600462_27600627_27601079_27601294_27602370
transcript_128825.known	chr8	-	790	4	FSM	ENSMUSG00000031487.6	ENSMUST00000211151.2	790	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	39.5080863734108	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCAAGCGTCCCCGTCCG	NA	False	NA	NA	False	NA	NA	NA	27618651	27614639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618252
transcript_128826.known	chr8	-	1899	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACCAGAGCTTTTAAA	NA	False	NA	-26	True	ATTAAA	-35	NA	27618708	27613391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
transcript_128827.known	chr8	-	620	4	FSM	ENSMUSG00000031487.6	ENSMUST00000210230.2	620	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	38.1255236758206	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCATCCCTTGCCCATCAT	NA	False	NA	NA	False	NA	NA	NA	27618641	27614527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618524
transcript_128830.nic	chr8	-	828	3	ISM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	7	2263	7	0	5prime_fragment	FALSE	canonical	3	93	junction_2	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27618701	27615654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_27616170_27617487_27617548_27618448
transcript_128831.known	chr8	-	3769	7	FSM	ENSMUSG00000031488.15	ENSMUST00000209377.2	3769	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	35.5293306063221	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATCTCCCAGCGTTTTGT	NA	False	NA	-3	True	NA	NA	NA	27664674	27633055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_27633423_27639063_27639123_27640722_27640832_27641624_27643188_27644173_27644964_27646254_27646698_27664236
transcript_128833.known	chr8	-	7965	6	FSM	ENSMUSG00000031488.15	ENSMUST00000054212.7	7965	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	30.9283041888817	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTGTCTGTACTTCAG	NA	False	NA	NA	False	AATAAA	-22	NA	27664674	27628800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_27633423_27640722_27640832_27641624_27643188_27644173_27644964_27646254_27646698_27664236
transcript_128834.nic	chr8	-	2257	6	NIC	ENSMUSG00000031488.15	novel	3769	7	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	38.0242028187311	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATCTCCCAGCGTTTTGT	NA	False	NA	-3	True	NA	NA	NA	27664725	27633055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_27633423_27639063_27639123_27640722_27640832_27644173_27644964_27646254_27646698_27664236
transcript_128838.known	chr8	-	3217	5	FSM	ENSMUSG00000031488.15	ENSMUST00000033878.14	3217	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	8.6421930087218	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGAGAGTCGGTCTCTC	NA	False	NA	NA	False	TTTAAA	-4	NA	27664674	27631985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_27633423_27640722_27640832_27644173_27644964_27646254_27646698_27664236
transcript_128846.nic	chr8	-	1431	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	28.2016547977833	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713874	27687486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
transcript_128847.nic	chr8	-	1636	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_6	20.0831604418561	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713891	27687486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
transcript_128850.nnic	chr8	-	1321	9	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_8	38.0813274453504	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713856	27687486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27713715
transcript_128867.nnic	chr8	-	2921	6	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	-301	-1	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_4	41.735356713463	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGTCCCCTGCTCGCCT	NA	False	NA	-13	True	AATAAA	-14	NA	27740945	27715804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_27716498_27716753_27716822_27717284_27718779_27719136_27719313_27739175_27739238_27740517
transcript_12887.nic	chr10	-	3998	13	NIC	ENSMUSG00000035529.11	novel	3962	12	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	78.1381877758173	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGAATTTGTCATGATCT	NA	False	NA	NA	False	ATTAAA	-18	NA	85752843	85727829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139_85743935_85744159_85744224_85746086_85746273_85748701_85748836_85752387_85752594_85752671
transcript_128872.nnic	chr8	-	2833	6	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	-301	-2	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_4	40.6890648700606	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTGTCCCCTGCTCGCC	NA	False	NA	-14	True	AATAAA	-13	NA	27740945	27715805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_27716411_27716753_27716822_27717284_27718779_27719136_27719313_27739175_27739238_27740517
transcript_128883.nnic	chr8	-	2447	5	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	-9466	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	47.5887329102173	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTGTCCCCTGCTCGCC	NA	False	NA	-14	True	AATAAA	-13	NA	27730318	27715805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_27716411_27716753_27716822_27717284_27718779_27719136_27719313_27730214
transcript_128884.nnic	chr8	-	2470	5	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	-9468	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	47.3312792981555	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTGTCCCCTGCTCGCC	NA	False	NA	-14	True	AATAAA	-13	NA	27730320	27715805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_27716411_27716753_27716822_27717284_27718779_27719136_27719334_27730214
transcript_128893.nnic	chr8	-	1116	3	NNC	ENSMUSG00000031489.16	novel	1864	3	NA	NA	898	-2	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	15.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTGTCCCCTGCTCGCC	NA	False	NA	-14	True	AATAAA	-13	NA	27717624	27715805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_27716411_27716753_27716925_27717284
transcript_128894.known	chr8	-	1864	3	FSM	ENSMUSG00000031489.16	ENSMUST00000121838.2	1864	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	27.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGAAAAAAAAAAAGTTTGA	NA	False	NA	NA	False	NA	NA	NA	27718611	27716028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_27716498_27716753_27716822_27717284
transcript_128898.known	chr8	+	1997	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	0	0	0	0	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	6923	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGATTGGTTCCCAGTGG	NA	False	NA	15	True	NA	NA	NA	27750356	27766702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_27750579_27763350_27763531_27765107
transcript_128902.known	chr8	+	1524	3	FSM	ENSMUSG00000039661.15	ENSMUST00000161713.2	1524	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTTGGCGTTATTAACA	NA	False	NA	NA	False	AATAAA	-19	NA	31581677	31587074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_31582129_31584115_31584331_31586216
transcript_128903.known	chr8	+	1726	6	FSM	ENSMUSG00000039328.12	ENSMUST00000217278.2	1726	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.55527776692624	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAATTAAATTTAATAACA	NA	False	NA	-23	True	TTTAAA	-1	NA	31601857	31619661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_31602201_31608458_31608616_31614879_31614926_31615193_31615236_31618279_31618363_31618606
transcript_128904.known	chr8	+	2114	1	FSM	ENSMUSG00000039328.12	ENSMUST00000209547.2	2114	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31601891	31604005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_31601900_31604000
transcript_128908.known	chr8	-	1902	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	-2	True	TATAAA	-20	NA	31658792	31649490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
transcript_128916.known	chr8	+	3652	8	FSM	ENSMUSG00000031577.11	ENSMUST00000209986.2	3652	8	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_7	52.8432414152019	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCAGCAACAGCACTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	31640367	31653367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909_31650078_31651818
transcript_128919.nic	chr8	-	748	8	ISM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	-57	2289	-57	-2289	5prime_fragment	FALSE	canonical	3	749	junction_3	35.3789975746594	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAGATGAAGA	NA	False	NA	NA	False	NA	NA	NA	31658849	31651779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
transcript_128921.known	chr8	+	3133	7	FSM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	19.2476549798208	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAAATTTGG	NA	False	NA	NA	False	NA	NA	NA	31640342	31651082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909
transcript_128932.nic	chr8	-	546	6	ISM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	-5	5246	-5	0	5prime_fragment	FALSE	canonical	3	749	junction_1	36.6715148309965	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGATGTTTACATGTT	NA	False	NA	32	True	NA	NA	NA	31658797	31654736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
transcript_128933.nic	chr8	+	1915	5	ISM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	-19	5034	-19	-5034	5prime_fragment	FALSE	canonical	3	141	junction_1	15.352117117844	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAATCCGTTTCACTCTC	NA	False	NA	11	True	GATAAA	-23	NA	31640323	31646048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805
transcript_128938.nic	chr8	+	3300	6	NIC	ENSMUSG00000046152.17	novel	3183	5	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_3	16.1195533436879	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTATTCTTTGGAG	NA	False	NA	10	True	AATAAA	-23	NA	31677341	31751511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_31677491_31684981_31685318_31691237_31691533_31715829_31715930_31725622_31726459_31749927
transcript_128940.known	chr8	+	3527	6	FSM	ENSMUSG00000046152.17	ENSMUST00000161502.2	3527	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	15.0519101777814	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTCAGTGCTTTCATG	NA	False	NA	NA	False	CATAAA	-11	NA	31677374	31751766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_31677491_31678329_31678435_31684981_31685318_31691237_31691533_31725622_31726459_31749927
transcript_128942.known	chr8	+	3183	5	FSM	ENSMUSG00000046152.17	ENSMUST00000066173.12	3183	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	11.5758369027902	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTATTCTTTGGAG	NA	False	NA	10	True	AATAAA	-23	NA	31677358	31751511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622_31726459_31749927
transcript_128945.known	chr8	+	2962	4	FSM	ENSMUSG00000046152.17	ENSMUST00000161788.8	2962	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	13.29995822884	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTGTCGCAGACTCTC	NA	False	NA	6	True	AATAAA	-16	NA	31677359	31727822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622
transcript_128946.known	chr8	+	2327	4	FSM	ENSMUSG00000046152.17	ENSMUST00000110527.9	2327	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	19.3964487013015	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTTCAAGAAATGTATT	NA	False	NA	2	True	AATAAA	-15	NA	31677370	31751503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31749927
transcript_128947.known	chr8	-	1625	7	FSM	ENSMUSG00000062991.10	ENSMUST00000238826.2	1625	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.86338998124982	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCGCATGTAGGCATAAAG	NA	False	NA	NA	False	AATAAA	-42	NA	32499569	32327195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_32327757_32339337_32339468_32437011_32437063_32439944_32439996_32448539_32448662_32458035_32458214_32499037
transcript_128948.known	chr8	-	5019	34	FSM	ENSMUSG00000031583.14	ENSMUST00000033990.7	5019	34	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_14	7.07885533384216	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTTCTTGGTAAACTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	33875500	33725709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33875369
transcript_128949.known	chr8	-	6262	34	FSM	ENSMUSG00000031583.14	ENSMUST00000033991.13	6262	34	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_33	8.54201521159467	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGCCTCAGATATGAT	NA	False	NA	NA	False	NA	NA	NA	33875555	33724411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33875479
transcript_128957.known	chr8	+	4014	8	FSM	ENSMUSG00000009628.15	ENSMUST00000124496.8	4014	8	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	4.09579176766613	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAAAAAGGACATGCA	NA	False	NA	NA	False	NA	NA	NA	34007351	34063586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34007456_34017251_34017328_34029640_34029777_34036214_34036381_34047229_34047468_34053003_34053151_34055070_34055234_34060602
transcript_128958.known	chr8	+	1469	7	FSM	ENSMUSG00000009630.11	ENSMUST00000009774.11	1469	7	0	0	0	0	multi-exon	FALSE	canonical	3	909	junction_3	33.4398298772919	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTCTTGACTGGTTAAG	8865	False	NA	NA	False	NA	NA	NA	34089652	34109469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34090047_34100682_34100893_34101775_34101950_34105477_34105568_34105693_34105856_34107054_34107174_34109149
transcript_12896.known	chr10	-	3877	12	FSM	ENSMUSG00000035529.11	ENSMUST00000037646.9	3877	12	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_11	19.4396714593195	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATGGAATTTGTCATG	NA	False	NA	NA	False	ATTAAA	-14	NA	85752790	85727833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387_85752594_85752671
transcript_128960.known	chr8	-	2808	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAAGTCAGCTTGTGAAT	4670	False	NA	NA	False	AATAAA	-21	NA	34131995	34109613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
transcript_128968.known	chr8	+	2673	13	FSM	ENSMUSG00000031584.17	ENSMUST00000033992.9	2673	13	0	0	0	0	multi-exon	FALSE	canonical	3	1474	junction_4	147.314360580811	2269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCAGTGTATTTTC	402	False	NA	14	True	TATAAA	-17	NA	34143265	34188191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34143808_34159180_34159208_34159920_34160010_34161550_34161621_34164114_34164263_34170290_34170346_34171492_34171593_34172620_34172708_34175571_34175731_34179368_34179481_34183826_34183959_34185026_34185161_34187173
transcript_12897.nic	chr10	-	3878	12	NIC	ENSMUSG00000035529.11	novel	3962	12	NA	NA	48	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	62.8899077425605	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGAATTTGTCATGATCT	NA	False	NA	NA	False	ATTAAA	-18	NA	85752954	85727829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387_85752594_85752838
transcript_12898.nnic	chr10	-	3846	12	NNC	ENSMUSG00000035529.11	novel	3962	12	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_11	63.1680168052428	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGAATTTGTCATGATCT	NA	False	NA	NA	False	ATTAAA	-18	NA	85752999	85727829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387_85752594_85752915
transcript_128988.known	chr8	+	1634	8	FSM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	317.681974204855	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5025	False	NA	9	True	AATAAA	-13	NA	34221860	34267192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
transcript_128990.known	chr8	+	1566	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5234	False	NA	9	True	AATAAA	-13	NA	34222069	34267192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
transcript_128992.known	chr8	+	1664	8	FSM	ENSMUSG00000031585.14	ENSMUST00000171010.8	1664	8	0	0	0	0	multi-exon	FALSE	canonical	2	96	junction_1	434.890697034723	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTTTGTTTTAAAAAGC	5531	False	NA	18	True	AATAAA	-22	NA	34222366	34267201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34222544_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
transcript_129.known	SIRV4003	+	4001	1	FSM	SIRV4003A	SIRV4003	4001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	TATAAA	-45	NA	0	4001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV4003_+_0_4000
transcript_129000.nnic	chr8	+	991	4	NNC	ENSMUSG00000031585.14	novel	471	3	NA	NA	-211	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	629.461321731173	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTTTGTTTTAAAAAGC	NA	False	NA	18	True	AATAAA	-22	NA	34254818	34267201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_34254942_34255027_34255059_34265971_34266088_34266480
transcript_129003.known	chr8	+	471	3	FSM	ENSMUSG00000031585.14	ENSMUST00000186200.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	654	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTGTTTTATTTTAT	NA	False	NA	-39	True	NA	NA	NA	34255029	34266806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34255059_34265971_34266088_34266480
transcript_129008.known	chr8	-	1385	9	FSM	ENSMUSG00000031586.18	ENSMUST00000182987.8	1385	9	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	473.977962963469	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTCCCTCTGCCTGGCCC	NA	False	NA	NA	False	NA	NA	NA	34419844	34273808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_12901.known	chr10	-	3962	12	FSM	ENSMUSG00000035529.11	ENSMUST00000220032.2	3962	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	54.6866354713247	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGAATTTGTCATGATCT	NA	False	NA	NA	False	ATTAAA	-18	NA	85752850	85727829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740135_85741212_85741363_85743139_85743935_85746086_85746273_85748701_85748836_85752387_85752594_85752671
transcript_129014.known	chr8	-	2466	8	FSM	ENSMUSG00000031586.18	ENSMUST00000053251.12	2466	8	0	0	0	0	multi-exon	FALSE	canonical	3	696	junction_1	308.820996959833	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTGTCTGACAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	34419891	34272670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_129016.known	chr8	-	2375	8	FSM	ENSMUSG00000031586.18	ENSMUST00000033994.15	2375	8	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	606.753118606551	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACATGATTTGTCTGACA	NA	False	NA	NA	False	AATAAA	-15	NA	34419834	34272674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_129027.known	chr8	-	1039	7	FSM	ENSMUSG00000031586.18	ENSMUST00000033995.14	1039	7	0	0	0	0	multi-exon	FALSE	canonical	3	456	junction_1	404.856524654791	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTACAGCGTTTTTGGTT	NA	False	NA	-7	True	AATAAA	-36	NA	34419833	34293966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_34294211_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_129042.known	chr8	-	1249	7	FSM	ENSMUSG00000031516.12	ENSMUST00000033913.11	1249	7	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_6	39.9485780584101	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGCTGCCTCAATTTCC	NA	False	NA	-3	True	AATAAA	-28	NA	34575950	34557576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
transcript_129044.known	chr8	-	501	4	FSM	ENSMUSG00000031516.12	ENSMUST00000153537.2	501	4	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_3	45.4386032649185	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGAGTACTAGCTGCTC	NA	False	NA	NA	False	AAGAAA	-33	NA	34575631	34561855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_34562127_34564342_34564449_34573495_34573561_34575572
transcript_129045.known	chr8	-	736	1	FSM	ENSMUSG00000063412.5	ENSMUST00000080152.5	736	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	513	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGTATTTTCAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	34578891	34578155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_34578200_34578900
transcript_129046.known	chr8	-	2879	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGCTTGTGGGTGTTTT	8786	False	NA	-4	True	AATAAA	-16	NA	34614187	34602725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
transcript_129051.known	chr8	+	1860	6	FSM	ENSMUSG00000031532.8	ENSMUST00000033933.8	1860	6	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTTGTTCTTTGTACT	NA	False	NA	9	True	AATAAA	-16	NA	34621729	34637975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
transcript_129052.known	chr8	+	2351	5	FSM	ENSMUSG00000031532.8	ENSMUST00000211664.2	2351	5	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	37.4098917400198	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTATTCTTGTTCTTTGT	NA	False	NA	6	True	AATAAA	-13	NA	34621834	34637972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635766_34637249
transcript_129054.known	chr8	+	418	4	FSM	ENSMUSG00000100605.2	ENSMUST00000188318.2	418	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	5.71547606649408	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTACTCTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-41	NA	34684012	34693299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_34684111_34688020_34688119_34691015_34691123_34693184
transcript_129055.known	chr8	+	2740	4	FSM	ENSMUSG00000031530.7	ENSMUST00000033930.5	2740	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	1.63299316185545	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGGCCTCCTAAAAGTC	NA	False	NA	NA	False	AATAAA	-19	NA	35274450	35287048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_35275328_35283600_35283747_35284277_35284498_35285551
transcript_129059.known	chr8	-	9163	27	FSM	ENSMUSG00000031529.6	ENSMUST00000033929.6	9163	27	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_19	17.0294297993192	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTGTAGCATTCAGC	NA	False	NA	-17	True	AATAAA	-15	NA	35432844	35293613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_35298876_35301591_35301749_35305537_35305725_35306041_35306148_35307121_35307197_35308906_35309005_35310068_35310190_35314434_35314518_35315735_35315974_35316306_35316496_35318251_35318362_35318767_35318988_35320377_35320544_35323081_35323228_35324607_35324688_35328668_35328841_35334434_35334514_35334847_35334940_35336625_35336748_35340181_35340369_35340756_35340824_35342367_35342463_35356829_35356906_35357657_35357695_35385532_35385629_35407849_35408075_35432167
transcript_129061.nic	chr8	-	2701	13	ISM	ENSMUSG00000031529.6	ENSMUST00000033929.6	9163	27	-29	30327	-29	-19032	5prime_fragment	FALSE	canonical	3	108	junction_5	17.2841851284796	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCCTCCCCTTCCTCTC	NA	False	NA	-2	True	NA	NA	NA	35432873	35323940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_35324688_35328668_35328841_35334434_35334514_35334847_35334940_35336625_35336748_35340181_35340369_35340756_35340824_35342367_35342463_35356829_35356906_35357657_35357695_35385532_35385629_35407849_35408075_35432167
transcript_129065.nic	chr8	-	1029	3	ISM	ENSMUSG00000031529.6	ENSMUST00000033929.6	9163	27	-29	91917	-29	2	5prime_fragment	FALSE	canonical	3	137	junction_2	6	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAGCCAGCGCTAGGAGG	NA	False	NA	NA	False	NA	NA	NA	35432873	35385530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_35385629_35407849_35408075_35432167
transcript_129066.known	chr8	+	4221	2	FSM	ENSMUSG00000046794.10	ENSMUST00000070481.8	4221	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACTATTCCTTCTATT	NA	False	NA	NA	False	NA	NA	NA	35842894	35855293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_35842960_35851137
transcript_129067.known	chr8	+	4349	2	FSM	ENSMUSG00000046794.10	ENSMUST00000210337.2	4349	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAAATGAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	35842892	35855283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_35843096_35851137
transcript_129069.known	chr8	+	4386	3	FSM	ENSMUSG00000046794.10	ENSMUST00000211648.2	4386	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGAAAACTATTCCTT	NA	False	NA	NA	False	NA	NA	NA	35842911	35855288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_35842960_35843720_35843908_35851137
transcript_129073.known	chr8	-	5079	7	FSM	ENSMUSG00000031527.8	ENSMUST00000033927.8	5079	7	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_2	28.274939827031	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGCCTGCGTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	35962687	35932406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_35936525_35941550_35941666_35943612_35943723_35945713_35945798_35949669_35949881_35958354_35958534_35962425
transcript_129085.known	chr8	+	6408	3	FSM	ENSMUSG00000070056.7	ENSMUST00000037666.6	6408	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	1	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTGGTAGCTCCAGCATT	NA	False	NA	NA	False	NA	NA	NA	36054951	36146603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_36058513_36131821_36131949_36143883
transcript_129087.known	chr8	+	4780	6	FSM	ENSMUSG00000050271.13	ENSMUST00000110492.2	4780	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	3.13687742827162	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTGTTTTTATTGCGT	NA	False	NA	10	True	AATAAA	-16	NA	36561981	36614941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_36562143_36566723_36567142_36569709_36571506_36596157_36596316_36606505_36607267_36613455
transcript_129089.known	chr8	-	3930	12	FSM	ENSMUSG00000039633.8	ENSMUST00000239119.2	3930	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_8	13.2583982428852	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCCCCCCCCCTTTAAAT	NA	False	NA	-2	True	AATAAA	-15	NA	36716670	36683217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_36684756_36686979_36687133_36689769_36689933_36690017_36690177_36692710_36692833_36696289_36696405_36697234_36697332_36697436_36697678_36698191_36698342_36701053_36701177_36703142_36703262_36715720
transcript_129094.nic	chr8	+	2468	6	NIC	ENSMUSG00000039620.18	novel	2573	7	NA	NA	48	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	1.6	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTAGACCTCTGTGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	36924775	36980167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_36925046_36925311_36925538_36956197_36956400_36965480_36965636_36972705_36972880_36978726
transcript_129098.known	chr8	-	6159	14	FSM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_4	11.0077971289962	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACACTGATTGAATTT	NA	False	NA	-13	True	NA	NA	NA	37081097	37034904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_37037558_37038418_37038593_37039821_37040040_37041108_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
transcript_129100.nic	chr8	-	2808	10	ISM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	-12	7155	-12	-2761	5prime_fragment	FALSE	canonical	3	12	junction_2	10.9555780932831	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGTTTGGGCAAACCAGA	NA	False	NA	NA	False	AAGAAA	-2	NA	37081109	37042059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
transcript_129101.nic	chr8	-	2793	9	ISM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	-12	9283	-12	-4889	5prime_fragment	FALSE	canonical	3	12	junction_1	10.7985820828477	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGATCAGATGCAAGGGG	NA	False	NA	NA	False	NA	NA	NA	37081109	37044187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
transcript_129106.known	chr8	-	616	3	FSM	ENSMUSG00000031523.17	ENSMUST00000145245.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	11.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTAAAAAAAAAAAATGATT	NA	False	NA	NA	False	NA	NA	NA	37081028	37060384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_37060613_37066522_37066595_37080712
transcript_129107.known	chr8	+	2747	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.2153269054433	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACACGTCAAATCTCA	NA	False	NA	NA	False	ATTAAA	-9	NA	39472998	39619367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
transcript_129110.nic	chr8	+	1474	9	NIC	ENSMUSG00000118664.1	novel	2747	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	47.9785108147387	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTTAGAATTGTGT	NA	False	NA	29	True	AATAAA	-19	NA	39472969	39618155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39593682_39593747_39597896_39597972_39610300_39610392_39617866
transcript_129113.known	chr8	+	2219	15	FSM	ENSMUSG00000039478.16	ENSMUST00000068999.14	2219	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	1.75691055374984	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTTGAGTGGATCCAAA	8262	False	NA	NA	False	NA	NA	NA	40760498	40837703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_40761452_40788850_40789005_40793338_40793371_40801980_40802060_40805076_40805125_40807343_40807427_40809896_40809969_40812450_40812490_40819189_40819286_40828577_40828679_40829136_40829309_40831872_40831982_40833712_40833871_40835149_40835219_40837649
transcript_129119.known	chr8	+	3381	13	FSM	ENSMUSG00000039470.16	ENSMUST00000049389.11	3381	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	8.82664841387841	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGTCTCCATCCAGTT	1220	False	NA	2	True	AATAAA	-26	NA	40876855	40938766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_40877211_40898818_40898846_40900091_40900187_40907538_40907660_40909071_40909142_40909703_40909737_40915128_40915250_40917198_40917332_40920469_40920597_40920951_40921045_40925953_40926067_40927775_40927849_40936746
transcript_129124.known	chr8	+	6002	12	FSM	ENSMUSG00000031600.12	ENSMUST00000098817.4	6002	12	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_7	12.6869491086687	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGGTGTC	NA	False	NA	12	True	NA	NA	NA	40964823	41003798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850_40996995_40997984_40998066_40999316
transcript_129132.nnic	chr8	-	2643	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	195.288177374418	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGACTGATGGCTT	NA	False	NA	-1	True	AATAAA	-23	NA	40964373	40945580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964130
transcript_129133.known	chr8	-	2615	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	67.4388612003495	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGACTGATGGCTT	NA	False	NA	-1	True	AATAAA	-23	NA	40964795	40945580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
transcript_129135.nnic	chr8	-	2727	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-7	-1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	186.712271214889	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATGGTTGTGACTGATG	NA	False	NA	-5	True	AATAAA	-19	NA	40964802	40945584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_40947157_40948736_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
transcript_129136.known	chr8	-	2461	6	FSM	ENSMUSG00000031601.17	ENSMUST00000135269.8	2461	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	206.645203186524	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTATATGGTTGTGACTG	NA	False	NA	-8	True	AATAAA	-16	NA	40964759	40945587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_40947157_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
transcript_12914.known	chr10	-	2009	12	FSM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	0	0	0	0	multi-exon	FALSE	canonical	3	1317	junction_1	96.7988457003782	1906	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	-12	True	ATTAAA	-17	NA	85793687	85774500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
transcript_129142.known	chr8	-	726	3	FSM	ENSMUSG00000031601.17	ENSMUST00000146280.2	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_2	66.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTAGTTATAGAGA	NA	False	NA	-4	True	AATAAA	-15	NA	40964763	40960358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_40960690_40963055_40963268_40964580
transcript_129149.known	chr8	-	2488	14	FSM	ENSMUSG00000039431.17	ENSMUST00000048898.17	2488	14	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_13	15.5985130530912	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATGTAATCATTTTAT	NA	False	NA	38	True	AATAAA	-23	NA	41087819	41004141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41061936_41062060_41087740
transcript_129158.nic	chr8	-	2417	13	NIC	ENSMUSG00000039431.17	novel	2488	14	NA	NA	-25	0	combination_of_known_junctions	TRUE	canonical	3	4	junction_12	79.1157731148192	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATCATTTTATTTTTCC	NA	False	NA	44	True	AATAAA	-29	NA	41087865	41004135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41087740
transcript_129168.known	chr8	-	151	1	FSM	ENSMUSG00000109658.2	ENSMUST00000210267.2	151	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	41136686	41136535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_41136500_41136700
transcript_129173.known	chr8	-	6548	14	FSM	ENSMUSG00000045636.17	ENSMUST00000059115.13	6548	14	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_13	16.5128603280297	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTGAGTCCTTGCTTTT	NA	False	NA	-2	True	TATAAA	-45	NA	41586763	41443950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650_41537878_41586517
transcript_129182.known	chr8	-	3964	10	FSM	ENSMUSG00000045636.17	ENSMUST00000051379.14	3964	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	37.6133677314165	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGCAGTTATTTTTGAA	NA	False	NA	NA	False	ATTAAA	-20	NA	41494903	41444088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41494509
transcript_129187.nic	chr8	-	2133	2	ISM	ENSMUSG00000045636.17	ENSMUST00000145860.2	2686	4	-50	32904	-50	1559	5prime_fragment	FALSE	canonical	3	90	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAGAAATCCCAATTAACAA	NA	False	NA	NA	False	TTTAAA	-13	NA	41586813	41536040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_41537878_41586517
transcript_129194.known	chr8	+	6624	38	FSM	ENSMUSG00000031592.11	ENSMUST00000045218.9	6624	38	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_5	37.5002702692963	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCTTTTGGGAAATGTT	NA	False	NA	8	True	AATAAA	-20	NA	41692809	41785381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842_41783958_41785019
transcript_129222.nic	chr8	+	2244	12	ISM	ENSMUSG00000031592.11	ENSMUST00000045218.9	6624	38	-33	56234	-12	1016	5prime_fragment	FALSE	canonical	3	55	junction_5	33.2103239947266	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAACTTAAACAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	41692776	41729147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962
transcript_129224.nic	chr8	+	2113	11	ISM	ENSMUSG00000031592.11	ENSMUST00000211247.2	6484	39	-198	56992	-172	6	5prime_fragment	FALSE	canonical	3	93	junction_5	27.2956040416767	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAGAAACTGAAGAGTC	NA	False	NA	NA	False	AATACA	-4	NA	41692616	41728137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031
transcript_129228.nic	chr8	+	1996	10	ISM	ENSMUSG00000031592.11	ENSMUST00000045218.9	6624	38	-193	57244	-172	6	5prime_fragment	FALSE	canonical	3	55	junction_5	34.9850056064588	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAGAAACTGAAGAGTC	NA	False	NA	NA	False	AATACA	-4	NA	41692616	41728137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031
transcript_129236.nic	chr8	+	555	3	ISM	ENSMUSG00000031592.11	ENSMUST00000210862.2	691	4	-185	1420	-172	-1420	5prime_fragment	FALSE	canonical	3	147	junction_1	7.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGGTGTAGCAAGTGATA	NA	False	NA	NA	False	AATAGA	-24	NA	41692616	41710883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_41693001_41709032_41709148_41710827
transcript_129241.known	chr8	-	2773	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	1193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTTTTTAAATAACTT	7501	False	NA	NA	False	NA	NA	NA	41827810	41793233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
transcript_129252.known	chr8	-	764	10	FSM	ENSMUSG00000031591.15	ENSMUST00000110417.8	764	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	446.180442931244	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGATGTTCGGAAGGAAA	7639	False	NA	NA	False	NA	NA	NA	41827672	41799216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827542
transcript_129255.known	chr8	-	1039	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	88.4737778949221	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTCTCGAGTCCTTT	NA	False	NA	-7	True	AATAAA	-23	NA	41870111	41850495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
transcript_129256.nic	chr8	-	848	8	ISM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	-68	1570	-68	-1570	5prime_fragment	FALSE	canonical	3	844	junction_3	78.6215424599105	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGCAAAGAAGATAGTAAA	NA	False	NA	NA	False	AAGAAA	-32	NA	41870179	41852065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
transcript_129257.nic	chr8	-	753	7	ISM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	-68	2163	-68	-2163	5prime_fragment	FALSE	canonical	3	844	junction_2	71.5541752799933	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATGACATCCCAGAAGAAG	NA	False	NA	NA	False	AAGAAA	-3	NA	41870179	41852658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
transcript_129258.nic	chr8	-	684	6	ISM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	-68	3337	-68	-3337	5prime_fragment	FALSE	canonical	3	844	junction_1	59.9819972991897	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAGACGGCAGGAGAAG	NA	False	NA	NA	False	AATGAA	-21	NA	41870179	41853832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
transcript_129268.nnic	chr8	-	1806	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38816	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_5	54.8005660629188	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633339	43582843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43633233
transcript_129273.nnic	chr8	-	1543	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38890	0	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_6	46.881647676771	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633413	43582843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43633233
transcript_129277.nnic	chr8	-	1255	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38828	0	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_6	46.881647676771	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCCTCTCCCCAAAGAC	NA	False	NA	NA	False	NA	NA	NA	43633351	43583069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43633233
transcript_12928.known	chr10	+	5388	9	FSM	ENSMUSG00000001786.15	ENSMUST00000130320.8	5388	9	0	0	0	0	multi-exon	TRUE	canonical	3	208	junction_3	24.7878498462452	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACAATGGCCCTACCCTG	NA	False	NA	3	True	AATAAA	-20	NA	85857835	85887737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_129297.known	chr8	+	1552	9	FSM	ENSMUSG00000091490.4	ENSMUST00000210136.2	1552	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	178.11092049619	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_43633650_43635378_43635395_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
transcript_129307.known	chr8	+	1519	8	FSM	ENSMUSG00000091490.4	ENSMUST00000209200.2	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_1	49.9477277781891	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGCCATTAGACTTAA	NA	False	NA	4	True	AATATA	-5	NA	43633577	43646901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
transcript_129308.known	chr8	+	1395	7	FSM	ENSMUSG00000091490.4	ENSMUST00000209872.2	1395	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	183.817542386163	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43643105_43643129_43643305_43643407_43646239
transcript_12931.known	chr10	+	1799	9	FSM	ENSMUSG00000001786.15	ENSMUST00000117597.2	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	75.1232320923428	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858060	85884187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_85858195_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_12932.known	chr10	+	1655	9	FSM	ENSMUSG00000001786.15	ENSMUST00000120344.8	1655	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	78.2747564672034	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858052	85884187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_85858195_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_129334.known	chr8	-	1837	5	FSM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1844.21519555067	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759973	43748099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43759877
transcript_12935.known	chr10	-	1889	1	FSM	ENSMUSG00000097692.3	ENSMUST00000190739.2	1889	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTGTAGATTGGGAAC	NA	False	NA	NA	False	NA	NA	NA	85858193	85856304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_85856300_85858200
transcript_129367.known	chr8	-	1772	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	0	0	0	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	3159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	AATAAA	-17	NA	43760017	43748103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
transcript_12937.known	chr10	-	2360	14	FSM	ENSMUSG00000059602.15	ENSMUST00000120638.8	2360	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.64622573531021	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAAGAGGCAATACTTT	NA	False	NA	NA	False	NA	NA	NA	86334720	85890988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_85891529_85893234_85893527_85899825_85899914_85900659_85900795_85904889_85904993_85909089_85909165_85916070_85916214_85970849_85970913_86187414_86187505_86190209_86190367_86243476_86243569_86284729_86284788_86302842_86303300_86334653
transcript_129379.known	chr8	-	1744	4	FSM	ENSMUSG00000051176.7	ENSMUST00000209356.2	1744	4	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	1933.09774426667	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759987	43748099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757595_43759877
transcript_12938.known	chr10	+	4722	5	FSM	ENSMUSG00000020044.14	ENSMUST00000020234.14	4722	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.15331193145904	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGCTGTCTCTTGCCTT	NA	False	NA	19	True	AGTAAA	-21	NA	86136235	86185370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_86136839_86174236_86174320_86179796_86179909_86180417_86180540_86181568
transcript_129380.known	chr8	+	14651	27	FSM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	17.6869557122435	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGCTTTAATGCCTGGT	NA	False	NA	8	True	AATAAA	-15	NA	45403244	45505282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_45406519_45441967_45442283_45460278_45460341_45462829_45463163_45463437_45463649_45466000_45466141_45470401_45470678_45470871_45471083_45475840_45479909_45480520_45480718_45482492_45482647_45483148_45483383_45484301_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
transcript_129381.known	chr8	+	1576	2	FSM	ENSMUSG00000054764.10	ENSMUST00000067984.9	1576	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGGTGAACGTGGACAT	NA	False	NA	NA	False	ATTAAA	-18	NA	45522173	45541543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_45522440_45540233
transcript_129384.known	chr8	+	1640	12	FSM	ENSMUSG00000031634.14	ENSMUST00000034051.7	1640	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_6	20.6765727613893	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTAGTCATGTAAATAC	8860	False	NA	104	True	AGTAAA	-19	NA	46428564	46449995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
transcript_129389.known	chr8	-	927	5	FSM	ENSMUSG00000050914.17	ENSMUST00000053558.10	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	16.393596310755	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452653
transcript_129390.known	chr8	-	884	5	FSM	ENSMUSG00000050914.17	ENSMUST00000153674.8	884	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	25.936219847927	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAAAATTTCTGTGCAT	NA	False	NA	NA	False	ATTAAA	-13	NA	46452904	46449947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452687
transcript_129391.nnic	chr8	-	731	5	NNC	ENSMUSG00000050914.17	novel	884	5	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	13.6083614002568	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAAAATTTCTGTGCAT	NA	False	NA	NA	False	ATTAAA	-13	NA	46452959	46449947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452895
transcript_129393.known	chr8	+	603	4	FSM	ENSMUSG00000031634.14	ENSMUST00000123041.8	603	4	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_3	26.5873821368124	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAGTTTTTTTCACT	8876	False	NA	NA	False	NA	NA	NA	46428580	46433902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609
transcript_129396.known	chr8	-	3206	19	FSM	ENSMUSG00000038291.17	ENSMUST00000041582.15	3206	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_18	14.0391867795859	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGTGCTCAAAGGTATT	NA	False	NA	NA	False	AATAAA	-14	NA	46604742	46486302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_46486860_46487438_46487540_46488574_46488757_46491491_46491559_46494353_46494472_46497004_46497170_46498222_46498337_46500327_46500469_46502402_46502535_46507355_46507518_46508884_46509161_46511503_46511636_46521092_46521275_46533258_46533330_46556551_46556739_46558155_46558329_46569218_46569436_46577098_46577184_46604598
transcript_129398.known	chr8	+	4619	5	FSM	ENSMUSG00000031631.16	ENSMUST00000034048.13	4619	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	7.58287544405155	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGATTCTGTTTTGTTC	NA	False	NA	18	True	AATAAA	-19	NA	46616687	46648627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_46616787_46622595_46623690_46634754_46635024_46644616_46644768_46645621
transcript_1294.nic	chr1	-	2617	11	ISM	ENSMUSG00000070939.10	ENSMUST00000186694.7	5385	12	225	4265	-41	3223	5prime_fragment	FALSE	canonical	3	38	junction_10	7.81280999384984	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCCAGTTTTTATTT	NA	False	NA	NA	False	TTTAAA	-14	NA	43131664	43090644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43131540
transcript_129403.nic	chr8	+	1206	2	ISM	ENSMUSG00000031631.16	ENSMUST00000034048.13	4619	5	-204	25129	-204	21	5prime_fragment	FALSE	canonical	3	40	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCGGGATGTATATG	NA	False	NA	NA	False	AGTAAA	-19	NA	46616483	46623498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_46616787_46622595
transcript_129404.nic	chr8	+	1119	2	ISM	ENSMUSG00000031631.16	ENSMUST00000034048.13	4619	5	-36	25048	-36	102	5prime_fragment	FALSE	canonical	3	40	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGGACAGAGTTTTGCTC	NA	False	NA	NA	False	AAGAAA	-2	NA	46616651	46623579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_46616787_46622595
transcript_129405.nic	chr8	+	1069	2	ISM	ENSMUSG00000031631.16	ENSMUST00000110376.8	2043	6	-37	25125	6	21	5prime_fragment	FALSE	canonical	2	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCGGGATGTATATG	NA	False	NA	NA	False	AGTAAA	-19	NA	46616734	46623498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_46616901_46622595
transcript_129406.known	chr8	+	1166	3	FSM	ENSMUSG00000031631.16	ENSMUST00000145229.2	1166	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	7	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGTTAAAAAACAAGAAA	NA	False	NA	NA	False	AAAAAG	-2	NA	46616751	46623477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_46616901_46617798_46617934_46622595
transcript_129408.known	chr8	-	1925	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	0	0	0	0	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGAGTTTGGGCTGGAA	NA	False	NA	NA	False	TATAAA	-13	NA	46664321	46659833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
transcript_129414.known	chr8	-	1275	3	FSM	ENSMUSG00000031633.5	ENSMUST00000155986.2	1275	3	0	0	0	0	multi-exon	FALSE	canonical	3	7715	junction_1	86	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	46664067	46661006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_46661576_46662058_46662546_46663848
transcript_129425.nnic	chr8	+	3868	22	NNC	ENSMUSG00000018796.14	novel	3897	21	NA	NA	-24	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_21	91.7312944718842	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTGAGTGGAGAATGTCT	2182	False	NA	5	True	AATAAA	-14	NA	46924049	46989076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376_46988383_46988423
transcript_129429.known	chr8	+	3897	21	FSM	ENSMUSG00000018796.14	ENSMUST00000034046.13	3897	21	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_9	34.1571368823559	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTCTTTCAAGTGCCTT	2206	False	NA	17	True	AATAAA	-26	NA	46924073	46989088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
transcript_129437.known	chr8	+	3429	21	FSM	ENSMUSG00000018796.14	ENSMUST00000110372.9	3429	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	90.7041344151412	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTACCTGATTTATGTG	9507	False	NA	NA	False	ATTAAA	-32	NA	46944002	46988618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_46944199_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
transcript_129460.known	chr8	-	3772	15	FSM	ENSMUSG00000038225.16	ENSMUST00000040468.16	3772	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	36.5959739059155	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAATATAAAAAAAA	NA	False	NA	-35	True	NA	NA	NA	47070235	47028653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
transcript_129473.known	chr8	+	3010	14	FSM	ENSMUSG00000031629.15	ENSMUST00000135432.8	3010	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	96.1013395100261	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAGATACTATTTTAAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	47005089	47033042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
transcript_129481.known	chr8	-	3943	14	FSM	ENSMUSG00000038225.16	ENSMUST00000136335.8	3943	14	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	37.9362592161327	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTGGTGTTTGTGGACT	NA	False	NA	NA	False	AATACA	-14	NA	47070235	47029196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
transcript_129490.known	chr8	-	1833	14	FSM	ENSMUSG00000038225.16	ENSMUST00000209787.2	1833	14	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_6	19.6766764885012	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTAAATTAGTGCCGG	NA	False	NA	NA	False	NA	NA	NA	47070243	47031897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
transcript_129497.known	chr8	+	2931	13	FSM	ENSMUSG00000031629.15	ENSMUST00000034045.15	2931	13	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_11	27.7942589995368	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAGATACTATTTTAAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	47005062	47033042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
transcript_129506.nnic	chr8	-	2045	13	NIC	ENSMUSG00000038225.16	novel	1833	14	NA	NA	-40	266	combination_of_known_splicesites	FALSE	canonical	3	19	junction_10	37.7258937012174	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTATGCCTGGTGATGACT	NA	False	NA	-4	True	ATTAAA	-19	NA	47070287	47031631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47063474_47063661_47065404_47065482_47070168
transcript_129509.nnic	chr8	-	1909	13	NIC	ENSMUSG00000038225.16	novel	1833	14	NA	NA	-40	266	combination_of_known_splicesites	FALSE	canonical	3	31	junction_7	35.2230984819148	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTATGCCTGGTGATGACT	NA	False	NA	-4	True	ATTAAA	-19	NA	47070287	47031631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
transcript_12951.known	chr10	-	2825	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	0	0	0	0	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	2383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541373	86526703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
transcript_129530.known	chr8	+	997	6	FSM	ENSMUSG00000031629.15	ENSMUST00000211217.2	997	6	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_2	30.0865418418269	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTTTTATTTTTGAG	NA	False	NA	21	True	NA	NA	NA	47005072	47016034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452
transcript_129532.known	chr8	-	1748	2	FSM	ENSMUSG00000038225.16	ENSMUST00000132472.3	1748	2	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-10	NA	47070247	47063812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_47065482_47070168
transcript_129535.known	chr8	+	1520	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	80.3189821205977	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTTTATTACTGGAAC	NA	False	NA	NA	False	TTTAAA	-9	NA	47070429	47091752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
transcript_129542.known	chr8	-	10467	4	FSM	ENSMUSG00000038143.17	ENSMUST00000079195.6	10467	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGATTTTTTTTCTTTTTT	7739	False	NA	0	True	ATTAAA	-23	NA	47742437	47633082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_47639608_47644873_47647140_47656155_47656309_47740914
transcript_129549.known	chr8	-	4332	30	FSM	ENSMUSG00000038102.16	ENSMUST00000039061.15	4332	30	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_18	20.4181612288351	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTTGGTTTTCTTTTAT	4054	False	NA	3	True	AATAAA	-29	NA	47986502	47943149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
transcript_129562.known	chr8	+	1371	8	FSM	ENSMUSG00000031568.17	ENSMUST00000175692.8	1371	8	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_2	58.3067189043231	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTTTCTCTCGGACTG	NA	False	NA	5	True	AATAAA	-13	NA	47986698	48004314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_47986979_47990313_47990395_47995730_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48001006_48001010_48003729
transcript_129567.nic	chr8	+	681	5	ISM	ENSMUSG00000031568.17	ENSMUST00000033973.14	2921	8	-29	8682	-29	0	5prime_fragment	FALSE	canonical	3	180	junction_4	12.1320855585509	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACCACAGCCCCATCAAG	NA	False	NA	NA	False	NA	NA	NA	47986669	47997178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_47986979_47990313_47990395_47995726_47995837_47995916_47996065_47997145
transcript_129568.known	chr8	-	2812	2	FSM	ENSMUSG00000063049.5	ENSMUST00000080353.3	2812	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATGTCCTCCATCCTGA	NA	False	NA	NA	False	AATGAA	-21	NA	48128193	48120212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_48122372_48127540
transcript_129574.known	chr8	+	1665	1	FSM	ENSMUSG00000074357.4	ENSMUST00000098781.3	1665	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAG	NA	False	NA	NA	False	NA	NA	NA	48128425	48130090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_48128400_48130100
transcript_129575.known	chr8	-	628	2	FSM	ENSMUSG00000063049.5	ENSMUST00000125536.2	628	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTATTGCCCAAAGTGT	NA	False	NA	NA	False	TATAAA	-11	NA	48128591	48121789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_48122372_48128545
transcript_129576.known	chr8	-	3393	3	FSM	ENSMUSG00000038069.7	ENSMUST00000212175.2	3393	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	31	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTAGATGATTGGGTA	NA	False	NA	NA	False	AATAAA	-18	NA	48166966	48162479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_48165330_48165922_48166054_48166554
transcript_129578.known	chr8	-	3464	3	FSM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	33.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAATGTGTGCTCTCAT	NA	False	NA	NA	False	TATAAA	-45	NA	48166967	48162378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_48165330_48165953_48166054_48166554
transcript_129579.known	chr8	-	842	1	FSM	ENSMUSG00000038069.7	ENSMUST00000212658.2	842	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATAAAGCATA	NA	False	NA	NA	False	NA	NA	NA	48166967	48166125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_48166100_48167000
transcript_129584.known	chr8	-	8678	23	FSM	ENSMUSG00000031563.9	ENSMUST00000057561.9	8678	23	0	0	0	0	multi-exon	TRUE	canonical	3	189	junction_17	22.8505746170765	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCCCTCTAGACTTGAAA	NA	False	NA	NA	False	AATAAA	-14	NA	48443586	48276993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_48281820_48284646_48284775_48295899_48296143_48299181_48299275_48300428_48300594_48302340_48302525_48304939_48305062_48309218_48309384_48311764_48311958_48316887_48316975_48317086_48317168_48317539_48317670_48321206_48321827_48322813_48322904_48328263_48328507_48331862_48331937_48333135_48333283_48336528_48336659_48340106_48340187_48352470_48352548_48353687_48353892_48373623_48373734_48443100
transcript_1296.nic	chr1	-	1782	3	ISM	ENSMUSG00000070939.10	ENSMUST00000095014.8	5607	13	-77	27599	-62	-317	5prime_fragment	FALSE	canonical	3	11	junction_1	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTAGGGCTCATTCTTGGT	7706	False	NA	NA	False	NA	NA	NA	43137859	43113958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_43115113_43136011_43136210_43137429
transcript_129612.nic	chr8	-	813	3	ISM	ENSMUSG00000031563.9	ENSMUST00000057561.9	8678	23	-32	76713	-32	-76713	5prime_fragment	FALSE	canonical	3	204	junction_1	21	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGCTCTCATACCAGCCG	NA	False	NA	NA	False	AAGAAA	-3	NA	48443618	48353706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_48353892_48373623_48373734_48443100
transcript_129618.known	chr8	+	2493	6	FSM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	146.129531580718	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563196	48594698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213_48591914_48593377
transcript_129619.known	chr8	+	2096	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	42.4480859403578	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48562992	48594700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
transcript_129621.nic	chr8	+	2374	6	NIC	ENSMUSG00000031562.17	novel	2096	6	NA	NA	-10	0	combination_of_known_junctions	TRUE	canonical	3	56	junction_1	132.43775896624	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48562982	48594700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
transcript_129622.known	chr8	+	2072	6	FSM	ENSMUSG00000031562.17	ENSMUST00000033966.14	2072	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	152.941034389074	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563047	48594698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_48563317_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
transcript_129630.known	chr8	+	786	4	FSM	ENSMUSG00000031562.17	ENSMUST00000173991.8	786	4	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	45.0209827623619	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTGACATATTGTGCAT	NA	False	NA	NA	False	AATATA	-19	NA	48563199	48590726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292
transcript_129640.nnic	chr8	+	1300	9	NIC	ENSMUSG00000031521.6	novel	2250	10	NA	NA	-58	0	combination_of_known_splicesites	TRUE	canonical	3	23	junction_6	114.178314490975	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTTGTCTACTTCCTT	NA	False	NA	22	True	AATAAA	-16	NA	53964703	53976456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972005_53973271_53973380_53974084_53974219_53976210
transcript_129641.known	chr8	+	1181	9	FSM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	34.8440723079264	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGACATTATGGAATGT	NA	False	NA	-61	True	NA	NA	NA	53964761	53976373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084_53974219_53976210
transcript_129646.known	chr8	-	2253	10	FSM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6.19039478985961	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54092100	54039901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_54040363_54041959_54042135_54052133_54052555_54053985_54054156_54058667_54058835_54060362_54060438_54061749_54061964_54062438_54062574_54076652_54076778_54091790
transcript_129651.known	chr8	+	2449	7	FSM	ENSMUSG00000031520.7	ENSMUST00000033919.6	2449	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	8.69386757049665	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAAGAAATCACTA	1021	False	NA	NA	False	NA	NA	NA	54530640	54640131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_54530961_54609992_54610195_54612327_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
transcript_129659.known	chr8	-	3466	5	FSM	ENSMUSG00000054408.10	ENSMUST00000067476.9	3466	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	423.496753234308	662	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTTTATGTGTTTTT	NA	False	NA	-4	True	AATAAA	-38	NA	54983033	54973467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_54976431_54977975_54978092_54979485_54979563_54981376_54981451_54982797
transcript_129661.known	chr8	+	1683	7	FSM	ENSMUSG00000031613.10	ENSMUST00000034026.10	1683	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	3.18416219575713	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAATTGCCTATTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	56747619	56774078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_56747748_56747973_56748098_56751390_56751498_56760628_56760726_56770784_56770862_56772027_56772192_56773092
transcript_129668.nic	chr8	-	1618	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_11	54.5031654247927	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003904	56984556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003722
transcript_129670.nic	chr8	-	2352	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	10	0	intron_retention	FALSE	canonical	3	38	junction_10	43.2676553559353	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57004072	56984556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097
transcript_129671.known	chr8	-	1690	11	FSM	ENSMUSG00000038215.16	ENSMUST00000040330.15	1690	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	43.9777216326631	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003892	56984556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003579
transcript_129672.nic	chr8	-	1559	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_10	38.0914688611505	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003904	56984556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003722
transcript_129673.nnic	chr8	-	1490	11	NNC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	51.662849321345	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003911	56984556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003798
transcript_129682.known	chr8	+	3571	6	FSM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	0	0	0	0	multi-exon	TRUE	canonical	3	53	junction_4	8.56504524214554	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTGCTGAATATGCA	NA	False	NA	NA	False	NA	NA	NA	57004124	57046974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_57004412_57017592_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
transcript_129688.known	chr8	-	1178	4	FSM	ENSMUSG00000031609.4	ENSMUST00000034022.4	1178	4	0	0	0	0	multi-exon	FALSE	canonical	3	1617	junction_3	52.2961651451508	2662	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTGCTTCAGCCTGTTT	NA	False	NA	97	True	AATAAA	-14	NA	57940894	57935740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_57936085_57938075_57938175_57938543_57938670_57940285
transcript_129690.known	chr8	+	298	2	FSM	ENSMUSG00000096917.3	ENSMUST00000210752.2	298	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTCCTGCTTCTTTCAA	NA	False	NA	9	True	NA	NA	NA	57958848	57959765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_57958943_57959561
transcript_1297.known	chr1	-	1795	2	FSM	ENSMUSG00000070939.10	ENSMUST00000187525.2	1795	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTGCTATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	43131623	43113400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_43115113_43131540
transcript_129708.known	chr8	+	414	3	FSM	ENSMUSG00000054717.8	ENSMUST00000210871.2	414	3	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	3614	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTGATCTGAGAACTAAC	NA	False	NA	NA	False	AAAAAG	-28	NA	57965007	57966243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_57965040_57965548_57965783_57966095
transcript_129711.known	chr8	+	2628	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGTTCTGTTTTGCTT	NA	False	NA	5	True	AAAACA	-17	NA	57964940	57969033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
transcript_129712.known	chr8	-	4313	12	FSM	ENSMUSG00000031608.14	ENSMUST00000034021.12	4313	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_6	43.6895509190027	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTTTCAGTGCTTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	58106065	57976861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995545_57995729_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
transcript_129713.known	chr8	-	3413	12	FSM	ENSMUSG00000031608.14	ENSMUST00000110316.3	3413	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	28.2342620537355	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAGAAAAGC	NA	False	NA	NA	False	GATAAA	-19	NA	58106037	57977733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995868_57996052_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
transcript_129730.known	chr8	+	1191	8	FSM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	79.3373062516324	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTAGTGTTTCTTTCA	NA	False	NA	22	True	AATAAA	-35	NA	61343484	61360614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
transcript_129739.known	chr8	+	1000	7	FSM	ENSMUSG00000038005.16	ENSMUST00000149267.8	1000	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	318.3514829032	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343478	61360607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_61343571_61346734_61346895_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
transcript_129745.nic	chr8	+	640	5	ISM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	-58	7450	-25	3082	5prime_fragment	FALSE	canonical	3	724	junction_4	61.9329274295992	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGCATTTTGAAAAACATA	NA	False	NA	NA	False	AAGAAA	-2	NA	61343426	61353164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117
transcript_129746.known	chr8	+	871	5	FSM	ENSMUSG00000038005.16	ENSMUST00000136098.2	871	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	440.137478522336	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGGATGTGGAAATGTAT	NA	False	NA	NA	False	NA	NA	NA	61343484	61359019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_61343571_61346734_61346895_61349771_61349871_61357033_61357122_61358581
transcript_129749.nnic	chr8	+	790	5	NIC	ENSMUSG00000038005.16	novel	1000	7	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	382.667610335654	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343429	61360607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_61343571_61353117_61353269_61357033_61357122_61358581_61358755_61360370
transcript_129750.nnic	chr8	+	652	4	NIC	ENSMUSG00000038005.16	novel	1000	7	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	388.477655585091	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343416	61360607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_61343571_61357033_61357122_61358581_61358755_61360370
transcript_129752.known	chr8	+	709	4	FSM	ENSMUSG00000038005.16	ENSMUST00000134886.2	709	4	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_2	46.3033476111609	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTGATCTTCATTTC	NA	False	NA	NA	False	NA	NA	NA	61343522	61350082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771
transcript_129756.known	chr8	+	531	3	FSM	ENSMUSG00000038005.16	ENSMUST00000146863.2	531	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	396.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343451	61360609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_61343571_61358581_61358755_61360370
transcript_129758.known	chr8	-	4175	14	FSM	ENSMUSG00000004319.16	ENSMUST00000004430.14	4175	14	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	79.7742376590516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAGTTAATATTGCACA	NA	False	NA	NA	False	ATTAAA	-14	NA	61436273	61364956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_61366210_61367786_61367863_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
transcript_129763.known	chr8	-	4099	13	FSM	ENSMUSG00000004319.16	ENSMUST00000110301.2	4099	13	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_11	50.7408995672021	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAGTTAATATTGCACA	NA	False	NA	NA	False	ATTAAA	-14	NA	61436273	61364956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
transcript_129775.known	chr8	-	5518	12	FSM	ENSMUSG00000004319.16	ENSMUST00000093490.9	5518	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_11	42.8184713366008	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGCTTTTAATTGCA	NA	False	NA	-1	True	ATTAAA	-18	NA	61436334	61363422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
transcript_129780.known	chr8	-	5684	12	FSM	ENSMUSG00000004319.16	ENSMUST00000056508.12	5684	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_11	67.8276863922271	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGCTTTTAATTGCA	NA	False	NA	-1	True	ATTAAA	-18	NA	61408267	61363422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61407576
transcript_129790.nic	chr8	-	2707	11	ISM	ENSMUSG00000004319.16	ENSMUST00000004430.14	4175	14	-78	10867	-17	5505	5prime_fragment	FALSE	canonical	3	96	junction_9	54.4477731408733	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACGGCTTTTAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	61436351	61375823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
transcript_129799.known	chr8	-	3034	5	FSM	ENSMUSG00000004319.16	ENSMUST00000147824.8	3034	5	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	69.2188558125602	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTTAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	61436278	61388390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
transcript_129803.known	chr8	-	3462	3	FSM	ENSMUSG00000004319.16	ENSMUST00000145493.2	3462	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	5.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAGAATCAGCAT	NA	False	NA	NA	False	AATACA	-41	NA	61436320	61391673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_61394449_61428765_61428942_61435809
transcript_129804.known	chr8	+	5109	35	FSM	ENSMUSG00000031644.20	ENSMUST00000211672.2	5109	35	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_18	18.7248331678183	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGGTCACCTGTGTTAA	NA	False	NA	NA	False	CATAAA	-40	NA	61446298	61583942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61503061_61503194_61507553_61507657_61524784_61524869_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
transcript_129808.known	chr8	+	5401	33	FSM	ENSMUSG00000031644.20	ENSMUST00000034065.14	5401	33	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_16	13.1719028024618	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATCAGTTGTCCTTATT	NA	False	NA	9	True	NA	NA	NA	61446228	61584380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
transcript_129813.nic	chr8	+	1734	13	ISM	ENSMUSG00000031644.20	ENSMUST00000125717.8	2068	15	-15	585	-10	-585	5prime_fragment	FALSE	canonical	3	39	junction_2	9.11805291105995	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCAAAAGGATCAGGTAG	NA	False	NA	NA	False	AAAAAG	-28	NA	61446218	61496992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948
transcript_129815.nic	chr8	+	1691	12	ISM	ENSMUSG00000031644.20	ENSMUST00000125717.8	2068	15	-15	1250	-10	-1250	5prime_fragment	FALSE	canonical	3	39	junction_2	9.47113928410109	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAGACACATGTGTGTT	NA	False	NA	NA	False	AAGAAA	-38	NA	61446218	61496327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266
transcript_129817.known	chr8	+	5479	12	FSM	ENSMUSG00000031642.10	ENSMUST00000034060.7	5479	12	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_9	7.49876022810956	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGGCCCTTTTTTTTTTA	NA	False	NA	7	True	ATTAAA	-18	NA	61676905	61849105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_61677381_61678865_61679353_61782252_61782529_61782956_61783053_61802433_61802737_61806771_61806883_61814621_61814807_61816108_61816280_61825541_61825802_61827042_61827402_61837610_61837964_61846702
transcript_129821.nic	chr8	+	2703	5	ISM	ENSMUSG00000031642.10	ENSMUST00000209611.2	4416	11	-259	35760	113	-13707	5prime_fragment	FALSE	canonical	3	51	junction_3	6.25999201277446	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATAATCCAGGTTCTCA	NA	False	NA	NA	False	AGTAAA	-4	NA	61677018	61803915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_61677381_61678865_61679353_61782252_61782529_61782956_61783053_61802433
transcript_129822.known	chr8	+	4309	5	FSM	ENSMUSG00000031641.15	ENSMUST00000034058.14	4309	5	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	10.8483869768736	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCCTCCTCCTCTCT	2566	False	NA	NA	False	ATTAAA	-29	NA	61940767	61959728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_61941025_61942973_61943095_61944578_61944713_61948101_61948237_61956066
transcript_129826.known	chr8	-	4193	12	FSM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	23.5231554638234	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTGGCCCTCTGTGAT	NA	False	NA	-8	True	AATAAA	-17	NA	62044176	61964466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387_61986610_61988719_61988819_61991721_61991858_62002604_62003280_62044093
transcript_129829.nic	chr8	-	2013	10	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	-90	4480	-90	0	5prime_fragment	FALSE	canonical	3	58	junction_6	22.9836227253287	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAGAAAATGAATCGCT	NA	False	NA	NA	False	NA	NA	NA	62044266	61968946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387_61986610_61988719_61988819_61991721_61991858_62002604_62003280_62044093
transcript_129832.known	chr8	-	2117	9	FSM	ENSMUSG00000037852.9	ENSMUST00000048967.9	2117	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	3.34477204006491	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATGGTGTGCATTTCTC	NA	False	NA	NA	False	AATAAA	-20	NA	65146088	65045575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_65046256_65047930_65048050_65050493_65050594_65059636_65059777_65062081_65062265_65064407_65064526_65070571_65070740_65072384_65072582_65145676
transcript_129840.known	chr8	-	2044	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	0	0	0	0	multi-exon	TRUE	canonical	3	690	junction_2	21.3822356174466	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186826	65171172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
transcript_129846.known	chr8	-	2969	2	FSM	ENSMUSG00000031604.11	ENSMUST00000135943.8	2969	2	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATCACATTTTTAT	NA	False	NA	NA	False	AATAAA	-4	NA	65186582	65178014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_65180943_65186541
transcript_129850.known	chr8	-	3412	15	FSM	ENSMUSG00000031605.9	ENSMUST00000034017.9	3412	15	0	0	0	0	multi-exon	FALSE	canonical	1	64	junction_10	38.1758150815782	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTGGGAGTTGTTCTTG	NA	False	NA	NA	False	ATTAAA	-13	NA	65302669	65192708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_65194009_65195988_65196133_65202065_65202207_65202728_65202858_65204762_65204865_65205682_65205881_65207318_65207437_65211125_65211276_65212766_65212884_65217156_65217267_65232731_65232895_65264331_65264454_65275642_65275750_65287094_65287221_65302284
transcript_129856.known	chr8	+	1122	6	FSM	ENSMUSG00000025521.16	ENSMUST00000026595.13	1122	6	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_4	36.201657420621	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTTTTGTATGTTGTGA	NA	False	NA	25	True	TATAAA	-17	NA	65399836	65421685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65416849_65416985_65418190_65418294_65421362
transcript_129859.known	chr8	+	916	5	FSM	ENSMUSG00000025521.16	ENSMUST00000079896.9	916	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	253.637536654179	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAATGTTTTGTATGTTGT	NA	False	NA	23	True	TATAAA	-15	NA	65399905	65421683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65418190_65418294_65421362
transcript_129862.known	chr8	-	945	3	FSM	ENSMUSG00000079042.11	ENSMUST00000124790.8	945	3	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	5	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTATGAGTTTATTGTG	NA	False	NA	-24	True	ATTAAA	-18	NA	65489824	65481071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_65481644_65488316_65488407_65489541
transcript_129863.known	chr8	-	975	4	FSM	ENSMUSG00000079042.11	ENSMUST00000142822.4	975	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	201.802433638007	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGAGTTTATTGTGTGT	NA	False	NA	-21	True	ATTAAA	-21	NA	65489988	65481068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_65481644_65488316_65488407_65489541_65489796_65489932
transcript_129866.known	chr8	-	4328	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTGAGTCTGATAACAAA	NA	False	NA	0	True	AATAAA	-17	NA	66939171	66925769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
transcript_129867.known	chr8	-	3150	7	FSM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_5	270.629153804406	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAAAAAAGATAATTAT	NA	False	NA	NA	False	NA	NA	NA	66939149	66926981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935252_66936709_66936823_66939063
transcript_129876.nic	chr8	-	2526	6	NIC	ENSMUSG00000025591.7	novel	3150	7	NA	NA	-10	-2125	intron_retention	FALSE	canonical	3	740	junction_4	84.295670114188	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTGTATGTAAGAATTT	NA	False	NA	-15	True	AATAAA	-15	NA	66939192	66929106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66936823_66939063
transcript_129877.known	chr8	-	1895	2	FSM	ENSMUSG00000025591.7	ENSMUST00000145787.2	1895	2	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	66939182	66935046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_66936823_66939063
transcript_129879.known	chr8	-	1787	1	FSM	ENSMUSG00000025591.7	ENSMUST00000213036.2	1787	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAAACAA	NA	False	NA	NA	False	AATATA	-29	NA	66939173	66937386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_66937400_66939200
transcript_129880.known	chr8	+	5485	2	FSM	ENSMUSG00000025519.6	ENSMUST00000183187.2	5485	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGGAATCCTCCTAAATT	NA	False	NA	NA	False	AATAAA	-8	NA	66964410	66970987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_66966353_66967444
transcript_129886.nnic	chr8	+	2734	9	NNC	ENSMUSG00000014907.11	novel	2990	8	NA	NA	4	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	23.6801604724292	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAGAGTTTTTAATTAA	NA	False	NA	14	True	AATAAA	-22	NA	67312872	67343216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_67313152_67313403_67313699_67317189_67317353_67330318_67330413_67332250_67332334_67336094_67336256_67338416_67338469_67340424_67340528_67341712
transcript_129889.known	chr8	+	2990	8	FSM	ENSMUSG00000014907.11	ENSMUST00000118009.2	2990	8	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_6	3.64215679542342	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTAGAGTTTTTAATTAA	NA	False	NA	14	True	AATAAA	-22	NA	67312868	67343216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_67313699_67317189_67317353_67330318_67330413_67332250_67332334_67336094_67336256_67338416_67338469_67340424_67340528_67341712
transcript_129890.known	chr8	+	1396	2	FSM	ENSMUSG00000051147.11	ENSMUST00000093470.7	1396	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCAAAGTGGTATATTGA	NA	False	NA	NA	False	AATAAA	-25	NA	67947509	67955236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_67947555_67953885
transcript_129891.nnic	chr8	+	2736	10	NNC	ENSMUSG00000053886.5	novel	2718	9	NA	NA	126	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	15.2372188901444	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGTTGCCTTGGTCA	NA	False	NA	17	True	NA	NA	NA	68729344	68800346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_68729525_68734684_68735064_68746954_68747112_68747507_68747652_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
transcript_129892.known	chr8	+	2718	9	FSM	ENSMUSG00000053886.5	ENSMUST00000066594.4	2718	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	6.37867541108654	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGTTGCCTTGGTCA	NA	False	NA	17	True	NA	NA	NA	68729218	68800346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_68729525_68734684_68735064_68746954_68747112_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
transcript_129908.known	chr8	+	4250	18	FSM	ENSMUSG00000031864.17	ENSMUST00000110242.8	4250	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_16	214.082317705889	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGGCCTAATGCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	69246607	69282060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69276841_69276920_69279928
transcript_129911.known	chr8	+	4192	18	FSM	ENSMUSG00000031864.17	ENSMUST00000070713.8	4192	18	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_17	216.037065895717	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGGCCTAATGCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	69246665	69282060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69277703_69277782_69279928
transcript_129912.nnic	chr8	+	3211	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	-26	-817	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	169.630210471184	132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGAGTGTTATTGTCC	NA	False	NA	NA	False	AATAAA	-10	NA	69246554	69281243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928_69280814_69281010
transcript_129919.known	chr8	+	4201	17	FSM	ENSMUSG00000031864.17	ENSMUST00000034328.13	4201	17	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_4	79.6960779696843	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGGCCTAATGCCATGT	NA	False	NA	NA	False	AATAAA	-26	NA	69246580	69282062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
transcript_129921.known	chr8	+	2322	16	FSM	ENSMUSG00000031864.17	ENSMUST00000110241.8	2322	16	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_4	82.2904341679855	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAGTACTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	69246586	69275163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808
transcript_129925.known	chr8	+	1408	4	FSM	ENSMUSG00000031864.17	ENSMUST00000146322.8	1408	4	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_3	36.0030862874591	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	69246607	69251453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410
transcript_129926.known	chr8	+	2328	3	FSM	ENSMUSG00000031864.17	ENSMUST00000145140.2	2328	3	0	0	0	0	multi-exon	FALSE	canonical	3	700	junction_1	15.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	69246625	69251453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69246801_69247262_69247331_69249368
transcript_129928.known	chr8	+	4115	10	FSM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_5	14.4871164560059	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTCATCATTTTGTATC	NA	False	NA	13	True	AATAAA	-24	NA	69333142	69359586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
transcript_129932.known	chr8	+	3954	1	FSM	ENSMUSG00000015568.17	ENSMUST00000213071.2	3954	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69333206	69337160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69333200_69337200
transcript_129935.known	chr8	-	3115	17	FSM	ENSMUSG00000036330.13	ENSMUST00000037478.13	3115	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.29753371825167	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGATAGTATATGCTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	69541874	69490362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_69491558_69492892_69493027_69493233_69493354_69493629_69493694_69495365_69495418_69496576_69496656_69503931_69504028_69504104_69504166_69517945_69517990_69518207_69518298_69519791_69519885_69520795_69520880_69524714_69524774_69526207_69526563_69527685_69527958_69529840_69529916_69541632
transcript_129941.known	chr8	+	2825	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	0	0	0	0	multi-exon	TRUE	canonical	3	1214	junction_12	88.1479391228044	1811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGACTCTGTGTTT	NA	False	NA	18	True	AATAAA	-22	NA	69541297	69566363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
transcript_129948.known	chr8	+	2507	10	FSM	ENSMUSG00000006273.15	ENSMUST00000153079.8	2507	10	0	0	0	0	multi-exon	FALSE	canonical	3	1265	junction_7	83.2199228283442	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69541419	69560015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460
transcript_129951.known	chr8	+	3001	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACCCTTGTCCTGTA	7200	False	NA	27	True	AATAAA	-18	NA	69661689	69683188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
transcript_129952.known	chr8	+	2327	1	FSM	ENSMUSG00000059897.6	ENSMUST00000212020.2	2327	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAAAGTTAAAATA	7210	False	NA	NA	False	AATAGA	-3	NA	69661699	69664026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_69661700_69664000
transcript_129953.known	chr8	-	928	1	FSM	ENSMUSG00000110444.3	ENSMUST00000211874.2	928	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	69848191	69847263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_69847300_69848200
transcript_129956.known	chr8	-	1480	6	FSM	ENSMUSG00000111594.2	ENSMUST00000216296.2	1480	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	37.4806616803919	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTATGTTGCTGCTGCTGC	4887	False	NA	NA	False	NA	NA	NA	70037814	70007453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70007608_70017134_70017508_70019411_70019532_70023186_70023486_70028451_70028852_70037680
transcript_129957.nnic	chr8	-	2275	5	NNC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	339	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	46.3215662515852	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTATTACTTAGTACTC	NA	False	NA	-6	True	AATAAA	-23	NA	70077857	70063507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70077727
transcript_129958.known	chr8	-	2259	5	FSM	ENSMUSG00000060427.16	ENSMUST00000121886.8	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	33.7083075813663	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTATTACTTAGTACTC	NA	False	NA	-6	True	AATAAA	-23	NA	70078199	70063507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70078085
transcript_129960.known	chr8	-	914	2	FSM	ENSMUSG00000060427.16	ENSMUST00000140522.2	914	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	70078196	70071519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70072323_70078085
transcript_129961.known	chr8	-	6080	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238292.2	6080	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	30.1029483605842	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGCCTCCATTGCTTAT	NA	False	NA	NA	False	CATAAA	-30	NA	70169487	70155305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70168933
transcript_129962.known	chr8	-	882	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238460.2	882	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	33.4542598184446	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACTGGAAAAAAACTCTAT	NA	False	NA	NA	False	NA	NA	NA	70169136	70160051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169034
transcript_129963.known	chr8	-	3180	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238418.2	3180	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	9.33742469849155	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	False	NA	0	True	NA	NA	NA	70169552	70157786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169417
transcript_129971.known	chr8	+	3915	26	FSM	ENSMUSG00000031862.12	ENSMUST00000034326.7	3915	26	0	0	0	0	multi-exon	TRUE	canonical	3	203	junction_10	47.3625337160081	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTGCCACTTATATCT	9164	False	NA	NA	False	AATAAA	-23	NA	70243812	70260399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252411_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
transcript_129972.nic	chr8	+	3783	26	NIC	ENSMUSG00000031862.12	novel	3915	26	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	87	junction_13	62.842609748482	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTGCCACTTATATCT	9226	False	NA	NA	False	AATAAA	-23	NA	70243874	70260399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252481_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
transcript_129977.nic	chr8	+	3923	25	NIC	ENSMUSG00000031862.12	novel	3915	26	NA	NA	-25	0	intron_retention	FALSE	canonical	3	223	junction_12	42.3897262186121	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTGCCACTTATATCT	9226	False	NA	NA	False	AATAAA	-23	NA	70243874	70260399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251372_70251461_70251583_70251970_70252129_70252411_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
transcript_129979.nic	chr8	+	3853	25	NIC	ENSMUSG00000031862.12	novel	3915	26	NA	NA	-25	0	intron_retention	FALSE	canonical	3	87	junction_12	60.2107410129898	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTGCCACTTATATCT	9226	False	NA	NA	False	AATAAA	-23	NA	70243874	70260399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251372_70251461_70251583_70251970_70252129_70252481_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
transcript_13.known	ERCC-00042	+	1007	1	FSM	ERCC-00042A	DQ516783	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	163	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAACA	-5	NA	0	1007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00042_+_0_1000
transcript_1300.known	chr1	+	3458	4	FSM	ENSMUSG00000010290.8	ENSMUST00000010434.8	3458	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	24.6080384337223	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGCAGGCCTGTCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	43137869	43155107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_43138023_43139874_43140042_43150157_43150534_43152345
transcript_130002.known	chr8	-	3245	4	FSM	ENSMUSG00000043090.19	ENSMUST00000137573.2	3245	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	2.44948974278318	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAAACAAAAACAAC	6869	False	NA	NA	False	NA	NA	NA	70227561	70216492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70219428_70220282_70220344_70221770_70221898_70227439
transcript_130003.known	chr8	-	2291	4	FSM	ENSMUSG00000092260.8	ENSMUST00000130458.8	2291	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.24721912892465	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATTTGGAAAAGGTATCA	9672	False	NA	NA	False	AATAAA	-16	NA	70202612	70194288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70196261_70196841_70196903_70197110_70197238_70202481
transcript_130006.known	chr8	+	5837	3	FSM	ENSMUSG00000031861.17	ENSMUST00000034325.6	5837	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTGAAGTTGTTTCTT	334	False	NA	NA	False	NA	NA	NA	70275078	70283752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70275362_70276203_70276946_70278940
transcript_130007.known	chr8	+	1350	2	FSM	ENSMUSG00000031861.17	ENSMUST00000238452.2	1350	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCCCCAGCCTTTCTTCA	489	False	NA	NA	False	NA	NA	NA	70275233	70277425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70275362_70276203
transcript_130010.known	chr8	+	1560	8	FSM	ENSMUSG00000031860.18	ENSMUST00000081503.13	1560	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	14.9543523116591	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2073	False	NA	5	True	ATTAAA	-18	NA	70285140	70324942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70285502_70311729_70311804_70316961_70317201_70317473_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_130012.known	chr8	+	1101	7	FSM	ENSMUSG00000031860.18	ENSMUST00000156319.8	1101	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	13.7446959466795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2219	False	NA	5	True	ATTAAA	-18	NA	70285286	70324942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70285502_70311729_70311804_70317547_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_130015.known	chr8	+	931	6	FSM	ENSMUSG00000031860.18	ENSMUST00000134777.10	931	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	11.2178429299041	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2272	False	NA	5	True	ATTAAA	-18	NA	70285339	70324942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70285502_70311729_70311804_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_130019.nic	chr8	+	834	4	NIC	ENSMUSG00000031860.18	novel	823	5	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	13.4246870437348	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2079	False	NA	5	True	ATTAAA	-18	NA	70285146	70324942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_70285502_70311729_70311804_70323227_70323335_70324644
transcript_130020.known	chr8	-	4314	8	FSM	ENSMUSG00000044006.9	ENSMUST00000057831.8	4314	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.8516401995451	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCCTTTGTGTCAATTGA	NA	False	NA	-1	True	ATTAAA	-15	NA	70340337	70333018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70335859_70335949_70336108_70336640_70336750_70336936_70337216_70338037_70338194_70338645_70338919_70339083_70339183_70339937
transcript_130039.known	chr8	-	3363	13	FSM	ENSMUSG00000036180.16	ENSMUST00000116463.4	3363	13	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_12	181.0697187703	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACCTGTGTGGAAATC	NA	False	NA	-24	True	AATAAA	-17	NA	70426921	70361305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
transcript_13004.nic	chr10	-	1192	7	ISM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	-71	7487	-71	3619	5prime_fragment	FALSE	canonical	3	3024	junction_4	197.189418242122	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGAAAGTAAGCCTGGCT	NA	False	NA	25	True	NA	NA	NA	86541444	86534190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
transcript_130041.known	chr8	-	3622	13	FSM	ENSMUSG00000036180.16	ENSMUST00000212478.2	3622	13	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_12	239.231916186412	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTCACCTGTGTGGAAAT	NA	False	NA	-25	True	AATAAA	-16	NA	70449034	70361306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
transcript_130049.nnic	chr8	-	3539	12	NIC	ENSMUSG00000036180.16	novel	3622	13	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	45	junction_11	319.205107769983	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACCTGTGTGGAAATC	NA	False	NA	-24	True	AATAAA	-17	NA	70449052	70361305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70448592
transcript_130055.nnic	chr8	-	3566	12	NIC	ENSMUSG00000036180.16	novel	3622	13	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	348.613831202643	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCACCTGTGTGGAAATC	NA	False	NA	-24	True	AATAAA	-17	NA	70449052	70361305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_70362625_70364326_70364520_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
transcript_13006.nic	chr10	-	1081	7	ISM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	-27	7554	-27	3552	5prime_fragment	FALSE	canonical	3	3024	junction_4	197.189418242122	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGAAAGAAGAATCTGA	NA	False	NA	-42	True	NA	NA	NA	86541400	86534257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
transcript_130068.known	chr8	-	5007	12	FSM	ENSMUSG00000036180.16	ENSMUST00000177851.9	5007	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	439.016726276361	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTCAACTGTATTGTTC	NA	False	NA	-9	True	AATAAA	-11	NA	70448883	70359725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70362625_70364326_70364520_70365551_70365875_70367168_70367449_70368933_70369099_70369209_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
transcript_130071.known	chr8	-	1931	19	FSM	ENSMUSG00000031858.17	ENSMUST00000212451.2	1931	19	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	54.8951019875382	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACACTGGAGCTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	70495384	70472213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70475320_70476260_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481425_70481857_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
transcript_130075.known	chr8	-	5369	19	FSM	ENSMUSG00000031858.17	ENSMUST00000050561.13	5369	19	0	0	0	0	multi-exon	TRUE	canonical	3	161	junction_6	45.5936155374607	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAAAAATGTCA	NA	False	NA	NA	False	NA	NA	NA	70495384	70468772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70475320_70476263_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481425_70481857_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
transcript_130087.known	chr8	-	1711	13	FSM	ENSMUSG00000031858.17	ENSMUST00000212055.2	1711	13	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_7	40.0696442321228	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGCATCCAACCTGG	NA	False	NA	NA	False	NA	NA	NA	70495350	70475890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481425_70481857_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
transcript_130088.nic	chr8	-	2179	12	ISM	ENSMUSG00000031858.17	ENSMUST00000212401.2	4269	17	-35	4675	-1	0	5prime_fragment	FALSE	canonical	3	224	junction_7	36.158740927396	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGCATCCAACCTGG	NA	False	NA	NA	False	NA	NA	NA	70495385	70475890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
transcript_130093.nnic	chr8	+	2186	15	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	-40	-392	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	133.476685268267	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2117	False	NA	11	True	ATTAAA	-16	NA	70495422	70524605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_70495528_70495670_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
transcript_130094.known	chr8	+	2681	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGCTCCTCTGGTCTTC	2157	False	NA	NA	False	GATAAA	-14	NA	70495462	70524997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
transcript_13010.known	chr10	+	1622	3	FSM	ENSMUSG00000097412.3	ENSMUST00000218095.2	1622	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	95.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521388	86525818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_86521473_86521743_86521861_86524397
transcript_130104.known	chr8	+	2963	8	FSM	ENSMUSG00000011306.8	ENSMUST00000211808.2	2963	8	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_4	42.1644012728021	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGAAAGGCTGTCTGTGT	2378	False	NA	NA	False	CATAAA	-19	NA	70495683	70519561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486
transcript_130105.known	chr8	+	2239	4	FSM	ENSMUSG00000011306.8	ENSMUST00000213035.2	2239	4	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_3	13.8884444373331	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGGAAATAAAAAAGT	2393	False	NA	NA	False	NA	NA	NA	70495698	70510969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035
transcript_130106.known	chr8	+	3648	5	FSM	ENSMUSG00000007594.11	ENSMUST00000007738.11	3648	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.08972473588517	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCCAATTTTTATT	1089	False	NA	3	True	NA	NA	NA	70536106	70543512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70536214_70537069_70537191_70537431_70537795_70539457_70539782_70540779
transcript_130110.known	chr8	-	1121	9	FSM	ENSMUSG00000036120.11	ENSMUST00000212320.2	1121	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	20.7590341779188	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCAGGGTGCCTCCCA	9603	False	NA	2	True	AATAAA	-18	NA	70591746	70585915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588185_70588282_70588859_70588941_70590678_70590874_70591570
transcript_130111.known	chr8	-	3609	9	FSM	ENSMUSG00000036120.11	ENSMUST00000075724.9	3609	9	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_5	11.7626261948597	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTAATGTGTAATGAGTG	9545	False	NA	-12	True	ATTAAA	-22	NA	70591804	70583455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588215_70588282_70588859_70588941_70590678_70590874_70591570
transcript_130114.known	chr8	+	1161	5	FSM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	248.840310239318	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAAACACCCCA	461	False	NA	9	True	NA	NA	NA	70583996	70586389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585746
transcript_130115.nic	chr8	+	1286	4	NIC	ENSMUSG00000071078.7	novel	1161	5	NA	NA	-33	0	intron_retention	FALSE	canonical	0	0	junction_3	279.964680312039	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACCCCATTTGTGGTA	414	False	NA	18	True	NA	NA	NA	70583949	70586398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_70584250_70584567_70584659_70585061_70585305_70585746
transcript_130116.known	chr8	+	1078	4	FSM	ENSMUSG00000071078.7	ENSMUST00000211898.2	1078	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	271.261661295674	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACCCCATTTGTGGTA	447	False	NA	18	True	NA	NA	NA	70583982	70586398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70584250_70584567_70584659_70585236_70585305_70585746
transcript_130118.known	chr8	+	1507	3	FSM	ENSMUSG00000071078.7	ENSMUST00000212851.2	1507	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	269.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCCCATTTGTGGTAC	461	False	NA	19	True	NA	NA	NA	70583996	70586399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70584250_70584567_70584659_70585236
transcript_13012.known	chr10	+	1665	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	104.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521474	86525818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_86521602_86521743_86521861_86524397
transcript_130128.nnic	chr8	+	1637	10	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5791	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	98.8253228906663	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	513	False	NA	5	True	NA	NA	NA	70611221	70620138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_70611545_70612035_70612105_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
transcript_130132.known	chr8	+	1312	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110143.8	1312	9	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_6	45.467021015237	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8589	False	NA	5	True	NA	NA	NA	70605427	70620138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
transcript_130136.known	chr8	+	1342	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110146.9	1342	9	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_6	49.3303595669036	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8589	False	NA	5	True	NA	NA	NA	70605427	70620138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
transcript_130143.nnic	chr8	+	1495	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5864	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	77.3801492632316	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	586	False	NA	5	True	NA	NA	NA	70611294	70620138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
transcript_130146.nnic	chr8	+	1525	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5864	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	79.2668554630496	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	586	False	NA	5	True	NA	NA	NA	70611294	70620138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
transcript_130147.known	chr8	+	1223	8	FSM	ENSMUSG00000079033.11	ENSMUST00000110140.2	1223	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_6	83.5031467083971	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATCTCCTCAAAGATC	8592	False	NA	4	True	NA	NA	NA	70605430	70620137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619468_70619557_70619715
transcript_130148.known	chr8	+	1253	8	FSM	ENSMUSG00000079033.11	ENSMUST00000110141.9	1253	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	84.1783820229398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATCTCCTCAAAGATC	8592	False	NA	4	True	NA	NA	NA	70605430	70620137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619468_70619557_70619715
transcript_130159.known	chr8	+	810	6	FSM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_5	44.6183818621877	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACCGTCTCTTTCCATG	8613	False	NA	17	True	AATACA	-11	NA	70592148	70599906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70599739
transcript_130165.known	chr8	+	756	4	FSM	ENSMUSG00000002345.19	ENSMUST00000123976.2	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	5.79271573232759	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCGAGCCTCAGCCAGC	8821	False	NA	11	True	AATAAA	-11	NA	70592356	70598185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673
transcript_130168.known	chr8	+	3018	12	FSM	ENSMUSG00000002342.18	ENSMUST00000002413.15	3018	12	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	38.6768771547844	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGATCCTTATCTTTT	5866	False	NA	NA	False	AATAAA	-44	NA	70625054	70636331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70625091_70626952_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
transcript_130173.known	chr8	+	2080	11	FSM	ENSMUSG00000002342.18	ENSMUST00000182980.8	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	59.2504008425259	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	5869	False	NA	7	True	AATAAA	-17	NA	70625057	70635500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70625091_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
transcript_130179.known	chr8	+	2109	11	FSM	ENSMUSG00000002342.18	ENSMUST00000147656.8	2109	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	71.0071123198233	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTGGCCCAGTCATGT	5874	False	NA	32	True	AATAAA	-42	NA	70625062	70635525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70625091_70626952_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633519_70633798_70633974_70634079_70634177_70634532
transcript_130180.known	chr8	+	2093	11	FSM	ENSMUSG00000002342.18	ENSMUST00000149105.2	2093	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	65.1644841919278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCAGTGTGGTCTGGCCC	7764	False	NA	24	True	AATAAA	-34	NA	70626952	70635517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70627057_70629494_70629576_70629890_70629989_70630176_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
transcript_130182.known	chr8	-	3081	9	FSM	ENSMUSG00000002346.17	ENSMUST00000063788.8	3081	9	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	10.6389614154766	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTCTTACTTCTTCA	NA	False	NA	NA	False	AATAAA	-13	NA	70664906	70636989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70637876_70637941_70639427_70640949_70641102_70641482_70641600_70642060_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
transcript_130184.nnic	chr8	+	3892	13	NNC	ENSMUSG00000036054.16	novel	4609	11	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	31.1430391723237	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGGCTCCTGTGCTGCC	1061	False	NA	26	True	AATAAA	-17	NA	70686844	70715755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_70686937_70687043_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332_70712470_70713118_70713240_70713880_70713968_70715520
transcript_130194.nnic	chr8	-	2338	8	NNC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	32.2256077664699	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATAAGTGAGTGTAAT	4648	False	NA	-26	True	NA	NA	NA	70687136	70672847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_70673528_70674755_70674894_70675167_70675300_70676112_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
transcript_130196.nic	chr8	-	2067	8	NIC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	30.2722341967901	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATAAGTGAGTGTAAT	5002	False	NA	-26	True	NA	NA	NA	70686782	70672847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686595
transcript_130197.known	chr8	-	2263	8	FSM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	11.6741472616082	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCATTTTTCTCACCT	4668	False	NA	0	True	TTTAAA	-1	NA	70687116	70672821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
transcript_130198.nnic	chr8	-	2199	8	NNC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_7	30.9258494348224	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATAAGTGAGTGTAAT	4658	False	NA	-26	True	NA	NA	NA	70687126	70672847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686807
transcript_1302.known	chr1	-	1563	6	FSM	ENSMUSG00000008136.15	ENSMUST00000008280.14	1563	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.4	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGTGTGGACTAATGAT	NA	False	NA	-2	True	AATAAA	-30	NA	43203121	43162233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_43162826_43167403_43167591_43170811_43170982_43180857_43181033_43192235_43192415_43202861
transcript_13020.known	chr10	+	5952	14	FSM	ENSMUSG00000054027.9	ENSMUST00000099396.3	5952	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_13	8.52632540148867	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGTTAGACCTATCG	NA	False	NA	12	True	AATAAA	-22	NA	86614868	86674253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_86615176_86640644_86640830_86647393_86647469_86648188_86648245_86651717_86651809_86652816_86652955_86656070_86656132_86656531_86656635_86656773_86656876_86658927_86659010_86660050_86660138_86661018_86661160_86667563_86667629_86669794
transcript_130207.nic	chr8	-	1418	5	ISM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	-20	3261	-20	-247	5prime_fragment	FALSE	canonical	3	75	junction_4	11.8822346383161	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTTAGGGTCGTGGTTC	4648	False	NA	NA	False	AATGAA	-14	NA	70687136	70676082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
transcript_130209.known	chr8	-	1414	4	FSM	ENSMUSG00000002343.12	ENSMUST00000135931.2	1414	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_3	12.0830459735946	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGAGCCTTGTCTGCCTTG	4685	False	NA	NA	False	AATAGA	-16	NA	70687099	70677259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70678124_70682177_70682261_70683929_70684057_70686759
transcript_130211.known	chr8	+	3517	6	FSM	ENSMUSG00000036054.16	ENSMUST00000136758.2	3517	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	8.51821577561874	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATTATGTACACAGCG	1489	False	NA	NA	False	AATAAA	-18	NA	70687272	70707413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228
transcript_130214.known	chr8	-	2137	13	FSM	ENSMUSG00000057788.14	ENSMUST00000008004.10	2137	13	0	0	0	0	multi-exon	TRUE	canonical	3	250	junction_9	19.6148682268211	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGAATCCAATAGCTAC	9931	False	NA	-24	True	NA	NA	NA	70755139	70745515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
transcript_130216.known	chr8	-	2163	13	FSM	ENSMUSG00000057788.14	ENSMUST00000144890.8	2163	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	78.7772439646543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTACTGAGTTTGGAAT	9968	False	NA	-35	True	NA	NA	NA	70755102	70745526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747486_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
transcript_130229.known	chr8	+	2445	10	FSM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_9	38.9171326009065	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGGCTCCCTGAGAGGC	NA	False	NA	NA	False	AATAAA	-25	NA	70735648	70747011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166_70744254_70745624
transcript_130242.nic	chr8	+	1739	9	ISM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	-3	2080	-3	543	5prime_fragment	FALSE	canonical	3	150	junction_8	37.4814537471534	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCATGCTATTAAGCATTC	NA	False	NA	6	True	ATTAAA	-15	NA	70735645	70744931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166
transcript_130245.nic	chr8	+	2629	9	NIC	ENSMUSG00000003573.16	novel	2445	10	NA	NA	-38	0	intron_retention	FALSE	canonical	3	142	junction_8	39.3660704160321	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTGAGATCTGGCTCCC	NA	False	NA	NA	False	AATAAA	-17	NA	70735610	70747003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70744079_70744166_70744254_70745624
transcript_13025.nic	chr10	-	3367	12	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	16	0	intron_retention	FALSE	canonical	3	12	junction_11	22.0262803213204	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	-11	True	ATTAAA	-13	NA	87982779	87927293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357_87982511_87982713
transcript_130257.known	chr8	-	1441	7	FSM	ENSMUSG00000057788.14	ENSMUST00000138688.2	1441	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	14.1705876926667	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACACAAAAGAAG	9957	False	NA	NA	False	NA	NA	NA	70755113	70748469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
transcript_130261.known	chr8	+	880	5	FSM	ENSMUSG00000003573.16	ENSMUST00000087467.12	880	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	81.1202810646018	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTTTTTTATTTGCTT	NA	False	NA	NA	False	ATTAAA	-9	NA	70735476	70739180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70738945
transcript_130263.known	chr8	+	678	4	FSM	ENSMUSG00000003573.16	ENSMUST00000155711.2	678	4	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	13.6707311029399	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGCGTTTGTGTGCATT	NA	False	NA	NA	False	NA	NA	NA	70735683	70738952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580
transcript_130264.known	chr8	+	2608	10	FSM	ENSMUSG00000003573.16	ENSMUST00000140212.8	2608	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	70.7611178718167	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGGCTCCCTGAGAGGC	NA	False	NA	NA	False	AATAAA	-25	NA	70735476	70747011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744175_70744254_70745624
transcript_130273.known	chr8	+	1300	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	2161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	452	False	NA	26	True	AATAAA	-15	NA	70755167	70765640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
transcript_130289.known	chr8	+	2753	8	FSM	ENSMUSG00000055681.15	ENSMUST00000134822.8	2753	8	0	0	0	0	multi-exon	FALSE	canonical	3	1283	junction_7	34.9203174588744	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTGATACCCACCAGGC	703	False	NA	29	True	AATAAA	-18	NA	70755418	70765643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70755583_70757283_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
transcript_13029.known	chr10	-	3594	11	FSM	ENSMUSG00000035365.16	ENSMUST00000048518.16	3594	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	14.3666279968544	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	-11	True	ATTAAA	-13	NA	87982803	87927293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357
transcript_130297.known	chr8	+	1038	3	FSM	ENSMUSG00000055681.15	ENSMUST00000140363.2	1038	3	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_1	23.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCTCCTGAAGAATGGGAT	675	False	NA	NA	False	NA	NA	NA	70755390	70759067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70755583_70757283_70757347_70758284
transcript_130298.known	chr8	+	2429	2	FSM	ENSMUSG00000055681.15	ENSMUST00000128822.2	2429	2	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGCAAG	727	False	NA	NA	False	TTTAAA	-8	NA	70755442	70759572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70755583_70757283
transcript_1303.known	chr1	+	483	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	43228315	43228798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_43228300_43228800
transcript_13030.nic	chr10	-	3253	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-15	0	intron_retention	FALSE	canonical	3	53	junction_4	10.555093557141	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	-11	True	ATTAAA	-13	NA	87982818	87927293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
transcript_130300.known	chr8	-	4618	24	FSM	ENSMUSG00000058301.9	ENSMUST00000075666.8	4618	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.934304983882	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCTGCTTTTGCGTGGGG	NA	False	NA	-29	True	AATAAA	-14	NA	70805928	70784174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70785130_70785269_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792631_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
transcript_130301.known	chr8	-	4518	24	FSM	ENSMUSG00000058301.9	ENSMUST00000215817.2	4518	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	119.404999372875	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCTGCTTTTGCGTGGGG	NA	False	NA	-29	True	AATAAA	-14	NA	70805861	70784174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70785130_70785269_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792664_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
transcript_130305.nic	chr8	-	3902	23	NIC	ENSMUSG00000058301.9	novel	4518	24	NA	NA	-31	-854	intron_retention	FALSE	canonical	3	421	junction_16	57.309367788902	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGCACCACTGTGTGAG	NA	False	NA	NA	False	AATAAA	-40	NA	70805959	70785028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792664_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875_70797016_70805427
transcript_130309.known	chr8	+	2711	8	FSM	ENSMUSG00000087408.11	ENSMUST00000140239.4	2711	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	3.65892813567591	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCGTTGGCGCAGGTGTG	2370	False	NA	NA	False	AAAAAG	-33	NA	70768436	70784237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70768759_70770840_70771001_70774153_70774335_70775177_70775340_70775751_70775900_70776010_70776121_70782187_70782927_70783348
transcript_130312.known	chr8	-	5683	14	FSM	ENSMUSG00000003575.14	ENSMUST00000076615.6	5683	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_8	14.7616166270428	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCCTCTTCCTCTTTTTC	5213	False	NA	-4	True	AATAAA	-18	NA	70892229	70835004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70861544_70861662_70892082
transcript_130317.known	chr8	-	870	4	FSM	ENSMUSG00000003575.14	ENSMUST00000125613.8	870	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	6.48074069840786	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGTTCCCCAATGCG	5217	False	NA	NA	False	NA	NA	NA	70892225	70857498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70857971_70858727_70858866_70861544_70861662_70892082
transcript_130327.nnic	chr8	-	3204	4	NNC	ENSMUSG00000055707.14	novel	2991	3	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	22.4251842554055	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGAGCAGACCTGTGCT	NA	False	NA	-18	True	AATAAA	-16	NA	70929638	70902917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_70905670_70908115_70908299_70928456_70928587_70929499
transcript_130328.known	chr8	-	2919	3	FSM	ENSMUSG00000055707.14	ENSMUST00000209415.2	2919	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	26.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTGTGACCTGTGCCAC	NA	False	NA	31	True	NA	NA	NA	70929600	70902868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70905504_70908115_70908299_70929499
transcript_130329.known	chr8	-	2974	3	FSM	ENSMUSG00000055707.14	ENSMUST00000210250.2	2974	3	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	21.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGCCACCAGTGTGACC	NA	False	NA	23	True	NA	NA	NA	70929599	70902876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70905568_70908115_70908299_70929499
transcript_13033.nic	chr10	-	2638	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-15	-615	combination_of_known_junctions	FALSE	canonical	3	53	junction_4	10.555093557141	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTTTGAAAAATCCCCAT	NA	False	NA	-8	True	AATAAA	-15	NA	87982818	87927908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
transcript_130330.known	chr8	-	2991	3	FSM	ENSMUSG00000055707.14	ENSMUST00000066597.13	2991	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	2	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGAGCAGACCTGTGCT	NA	False	NA	-18	True	AATAAA	-16	NA	70929555	70902917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70905670_70908115_70908299_70929499
transcript_130332.known	chr8	-	2734	2	FSM	ENSMUSG00000055707.14	ENSMUST00000166976.3	2734	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGGTGTCCCTTGCTGC	NA	False	NA	NA	False	NA	NA	NA	70929618	70903054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70905670_70929499
transcript_130335.known	chr8	-	1491	8	FSM	ENSMUSG00000035964.9	ENSMUST00000045286.9	1491	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.03015750727543	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGGCTGAGCCTGCTT	NA	False	NA	NA	False	AATAAA	-13	NA	70940008	70936516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70937085_70937183_70937302_70937381_70937497_70937729_70937833_70938324_70938478_70938686_70938785_70938877_70939023_70939817
transcript_130336.known	chr8	+	1644	9	FSM	ENSMUSG00000007888.16	ENSMUST00000008032.14	1644	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.09901951359278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTGTTTGGGGCCTAT	NA	False	NA	NA	False	AATAAA	-27	NA	70945807	70956731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70946051_70951246_70951529_70951742_70951873_70951979_70952150_70953533_70953692_70953759_70953929_70955954_70956143_70956246_70956290_70956470
transcript_130337.known	chr8	+	544	3	FSM	ENSMUSG00000007888.16	ENSMUST00000127983.2	544	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	5.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCCAAGAGTCTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	70953782	70956680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70953929_70955954_70956143_70956470
transcript_130338.known	chr8	-	671	5	FSM	ENSMUSG00000058833.12	ENSMUST00000136913.2	671	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	340.250918441082	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTTTCCCATCAGCTC	NA	False	NA	-12	True	AATAAA	-13	NA	70959387	70956948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70957179_70957633_70957711_70958405_70958611_70959146_70959230_70959311
transcript_130340.known	chr8	-	632	4	FSM	ENSMUSG00000058833.12	ENSMUST00000133683.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	338.518340222013	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959076	70956944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70958941
transcript_130342.nic	chr8	-	594	4	NIC	ENSMUSG00000058833.12	novel	671	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	348.934887272046	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959402	70956944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_70957160_70958405_70958611_70959146_70959230_70959311
transcript_130345.known	chr8	-	725	4	FSM	ENSMUSG00000058833.12	ENSMUST00000135773.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_3	46.3968389727864	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCATCAGCTCTGTATCT	NA	False	NA	-5	True	AATAAA	-20	NA	70959371	70956941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146
transcript_130346.known	chr8	-	572	2	FSM	ENSMUSG00000058833.12	ENSMUST00000143598.8	572	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70958762	70956944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70957160_70958405
transcript_130351.known	chr8	+	1698	9	FSM	ENSMUSG00000019428.17	ENSMUST00000075491.14	1698	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	448.998590615828	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTCTAGGCCTCTT	NA	False	NA	25	True	AATAAA	-17	NA	70980396	70987976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
transcript_130354.known	chr8	+	1799	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_1	286.852068800279	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTTTCTAGGCCTCTTT	NA	False	NA	26	True	AATAAA	-18	NA	70980495	70987977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
transcript_130359.nic	chr8	+	1977	8	ISM	ENSMUSG00000019428.17	ENSMUST00000075491.14	1698	9	-27	0	-4	0	intron_retention	FALSE	canonical	0	0	junction_1	458.365107123755	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTCTAGGCCTCTT	NA	False	NA	25	True	AATAAA	-17	NA	70980369	70987976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132
transcript_130360.nic	chr8	+	2559	8	NIC	ENSMUSG00000019428.17	novel	1698	9	NA	NA	-4	0	intron_retention	FALSE	canonical	0	0	junction_1	479.613790205309	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTCTAGGCCTCTT	NA	False	NA	25	True	AATAAA	-17	NA	70980369	70987976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70985400_70986766_70986845_70987132_70987265_70987516
transcript_130363.nic	chr8	+	2128	8	ISM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	-78	1	6	0	intron_retention	FALSE	canonical	3	550	junction_1	284.398039546617	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTCTAGGCCTCTT	NA	False	NA	25	True	AATAAA	-17	NA	70980417	70987976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132
transcript_13037.known	chr10	+	1267	10	FSM	ENSMUSG00000035351.17	ENSMUST00000052355.15	1267	10	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	64.7921653547559	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTTCCTATTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	87982853	88014252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
transcript_130379.known	chr8	-	884	7	FSM	ENSMUSG00000055553.17	ENSMUST00000121623.8	884	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	10409.9140993361	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTAATTGGTGTCTAG	NA	False	NA	-13	True	AATAAA	-19	NA	70975813	70960921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70975712
transcript_13038.known	chr10	+	1277	10	FSM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	172.048514547568	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	10	True	AATAAA	-18	NA	87982938	88014250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_87983032_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
transcript_130380.known	chr8	-	917	7	FSM	ENSMUSG00000055553.17	ENSMUST00000138260.8	917	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_6	10452.4158770433	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGACAAGATGATCTGCC	NA	False	NA	NA	False	NA	NA	NA	70980606	70961099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70980294
transcript_130396.known	chr8	-	1216	5	FSM	ENSMUSG00000055553.17	ENSMUST00000093456.12	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_4	146.224784150978	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70975830	70966045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70975712
transcript_1304.known	chr1	+	2772	5	FSM	ENSMUSG00000066877.12	ENSMUST00000086421.9	2772	5	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	15.4757875405422	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGCTGTGTGTTTGTGTT	NA	False	NA	11	True	AATAAA	-15	NA	43484910	43609675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_43485188_43548780_43548944_43572711_43572954_43593020_43593743_43608307
transcript_130403.known	chr8	-	697	4	FSM	ENSMUSG00000090137.9	ENSMUST00000140679.8	697	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10633.6606532694	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963000	70960912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962767
transcript_130404.known	chr8	-	541	4	FSM	ENSMUSG00000090137.9	ENSMUST00000081940.11	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	1892	junction_3	9741.86690983247	2870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963067	70960915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962987
transcript_130408.known	chr8	-	1033	2	FSM	ENSMUSG00000055553.17	ENSMUST00000138586.2	1033	2	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70975754	70971720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_70972712_70975712
transcript_130409.known	chr8	+	3072	12	FSM	ENSMUSG00000070002.8	ENSMUST00000093454.8	3072	12	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_2	19.7818683154445	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGTGGTTTGAGTAT	NA	False	NA	8	True	AATAAA	-16	NA	70992337	71045508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_70992492_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
transcript_130413.known	chr8	+	1836	11	FSM	ENSMUSG00000019139.11	ENSMUST00000019283.10	1836	11	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	49.1426495012225	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	False	NA	18	True	AATAAA	-14	NA	71047130	71049938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
transcript_130416.known	chr8	+	1916	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210878.2	1916	10	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	45.5894183087303	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	False	NA	18	True	AATAAA	-14	NA	71047139	71049938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
transcript_130437.known	chr8	-	1475	17	FSM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	0	0	0	0	multi-exon	TRUE	canonical	3	428	junction_1	289.200298236361	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTACTGCTGATGTCT	NA	False	NA	-10	True	AATAAA	-17	NA	71060964	71050139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
transcript_13045.known	chr10	+	838	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	103.215658803411	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGTTTGTTGACCAA	NA	False	NA	13	True	AATAAA	-16	NA	88037013	88081868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
transcript_130452.nic	chr8	-	1655	17	NIC	ENSMUSG00000070003.8	novel	1475	17	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_1	351.765524710708	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGCCATTCCGTTTT	NA	False	NA	-32	True	NA	NA	NA	71061050	71050161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_71050419_71050546_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
transcript_130455.known	chr8	-	1549	16	FSM	ENSMUSG00000070003.8	ENSMUST00000211134.2	1549	16	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	298.200603621119	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGGTACTGCTGATG	NA	False	NA	-13	True	AATAAA	-14	NA	71060952	71050142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
transcript_130457.nic	chr8	-	1632	16	NIC	ENSMUSG00000070003.8	novel	1475	17	NA	NA	-73	0	intron_retention	FALSE	canonical	3	428	junction_1	272.959695844562	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTACTGCTGATGTCT	NA	False	NA	-10	True	AATAAA	-17	NA	71061037	71050139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
transcript_130462.nic	chr8	-	1979	16	NIC	ENSMUSG00000070003.8	novel	1828	16	NA	NA	-261	0	intron_retention	FALSE	canonical	3	751	junction_3	214.93682792858	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTACTGCTGATGTC	NA	False	NA	-11	True	AATAAA	-16	NA	71061225	71050140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
transcript_13048.known	chr10	-	2807	7	FSM	ENSMUSG00000020057.3	ENSMUST00000020249.2	2807	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.21335164821342	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGTCTCGGTTGCATT	NA	False	NA	NA	False	AATAAA	-18	NA	88192937	88158665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_88160648_88161195_88161289_88164944_88165004_88172672_88172851_88176381_88176525_88180505_88180574_88192653
transcript_130488.nic	chr8	-	2063	15	NIC	ENSMUSG00000070003.8	novel	1828	16	NA	NA	-261	0	intron_retention	FALSE	canonical	3	981	junction_3	172.790615887482	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTACTGCTGATGTC	NA	False	NA	-11	True	AATAAA	-16	NA	71061225	71050140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_71050771_71050855_71050885_71051188_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
transcript_130535.known	chr8	+	1906	3	FSM	ENSMUSG00000049988.6	ENSMUST00000052437.6	1906	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGCCCGGCTTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	71069493	71074133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71069677_71070211_71071015_71073213
transcript_130536.nnic	chr8	-	1404	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-187	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_3	120.610484158256	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	467	False	NA	-7	True	AATAAA	-17	NA	71085293	71082043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_71082825_71083982_71084242_71084799_71085030_71085159
transcript_130538.nnic	chr8	-	1443	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-6431	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	125.762562880303	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	NA	False	NA	-7	True	AATAAA	-17	NA	71091537	71082043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_71082825_71083982_71084242_71084799_71085030_71091364
transcript_130539.nnic	chr8	-	1437	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-187	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_3	121.491654948899	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	467	False	NA	-7	True	AATAAA	-17	NA	71085293	71082043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_71082825_71083982_71084275_71084799_71085030_71085159
transcript_130541.nnic	chr8	-	1476	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-6431	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	126.533263083929	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	NA	False	NA	-7	True	AATAAA	-17	NA	71091537	71082043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_71082825_71083982_71084275_71084799_71085030_71091364
transcript_130542.nnic	chr8	-	1522	3	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-175	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_2	115.5	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	479	False	NA	-7	True	AATAAA	-17	NA	71085281	71082043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_71082825_71083982_71084242_71084799
transcript_130543.known	chr8	-	1380	3	FSM	ENSMUSG00000038508.8	ENSMUST00000110103.2	1380	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	118	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	654	False	NA	-7	True	AATAAA	-17	NA	71085106	71082043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71082825_71083982_71084275_71084799
transcript_130544.nnic	chr8	-	1962	3	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-187	0	intron_retention	FALSE	canonical	3	33	junction_2	137.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	467	False	NA	-7	True	AATAAA	-17	NA	71085293	71082043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_71082825_71083982_71085030_71085159
transcript_130547.known	chr8	-	4883	5	FSM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_1	24.3554408705735	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCATCCAGTGTCACCT	NA	False	NA	-5	True	AATAAA	-18	NA	71112388	71099084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112259
transcript_13056.known	chr10	+	5390	21	FSM	ENSMUSG00000035311.17	ENSMUST00000020251.10	5390	21	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	23.2735901828661	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTATTGTTAGTATTTTT	NA	False	NA	22	True	CATAAA	-24	NA	88215087	88283191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_88215398_88236513_88236600_88247777_88247898_88248466_88248509_88250254_88250461_88254986_88255052_88255287_88255423_88264354_88264517_88265322_88265503_88265701_88265873_88267194_88267319_88268302_88268507_88268910_88269951_88271863_88272064_88272213_88272434_88273296_88273411_88274989_88275076_88275312_88275412_88276085_88276254_88279170_88279262_88281624
transcript_130564.known	chr8	+	925	5	FSM	ENSMUSG00000031848.16	ENSMUST00000034311.15	925	5	0	0	0	0	multi-exon	FALSE	canonical	3	2963	junction_1	310.191070148707	2086	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71125897	71131402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130785_71131009
transcript_130565.known	chr8	+	1667	1	FSM	ENSMUSG00000071076.9	ENSMUST00000095267.8	1667	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	933	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTGTCCGCCTCCTT	NA	False	NA	34	True	AGTAAA	-16	NA	71151598	71153265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71151600_71153300
transcript_130566.known	chr8	+	1149	4	FSM	ENSMUSG00000095026.3	ENSMUST00000179347.3	1149	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	14.4299072146089	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTAAAGTCTCACGATT	NA	False	NA	NA	False	CATAAA	-1	NA	71171191	71175281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71171282_71173068_71173378_71174425_71174587_71174692
transcript_130567.known	chr8	+	842	3	FSM	ENSMUSG00000095026.3	ENSMUST00000213065.2	842	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	4.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAAAGTCTCACGATTCA	NA	False	NA	NA	False	CATAAA	-3	NA	71171191	71175283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71171282_71174425_71174587_71174692
transcript_130568.known	chr8	+	3099	15	FSM	ENSMUSG00000031842.16	ENSMUST00000224874.2	3099	15	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_14	1.61150202466835	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTAGCTGGA	NA	False	NA	NA	False	NA	NA	NA	71195680	71203824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71195899_71197922_71198115_71198515_71198553_71198636_71198708_71198832_71198886_71199180_71199294_71199435_71199530_71199868_71200030_71200115_71200215_71200463_71200629_71200705_71200806_71201016_71201172_71201559_71201683_71201871_71202055_71202489
transcript_130572.known	chr8	+	1363	5	FSM	ENSMUSG00000031840.15	ENSMUST00000034301.12	1363	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.43303437365925	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGCAGTCCTTGACAT	NA	False	NA	46	True	NA	NA	NA	71207359	71211281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71207513_71208502_71208731_71209093_71209213_71209783_71209909_71210543
transcript_130575.known	chr8	-	980	5	FSM	ENSMUSG00000035559.10	ENSMUST00000038626.10	980	5	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_3	27.2304976083802	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213592	71211294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71211671_71211754_71211884_71212036_71212114_71213013_71213185_71213365
transcript_130577.nnic	chr8	-	1060	5	NNC	ENSMUSG00000035559.10	novel	980	5	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_3	276.99311814556	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213631	71211294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_71211671_71211754_71211884_71212036_71212155_71213013_71213185_71213365
transcript_130590.known	chr8	-	339	2	FSM	ENSMUSG00000035559.10	ENSMUST00000212385.2	339	2	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCCTGGGTAAGGAGCAG	NA	False	NA	NA	False	NA	NA	NA	71213546	71213022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71213181_71213365
transcript_130591.known	chr8	+	1375	5	FSM	ENSMUSG00000031840.15	ENSMUST00000110090.8	1375	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	23.3492505233037	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGCAGTCCTTGACAT	NA	False	NA	46	True	NA	NA	NA	71207372	71211281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71207513_71208477_71208731_71209093_71209213_71209783_71209909_71210543
transcript_130604.known	chr8	-	3165	16	FSM	ENSMUSG00000031834.16	ENSMUST00000034296.15	3165	16	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_15	21.8259784049498	598	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTTTGGGGACTGG	NA	False	NA	-8	True	NA	NA	NA	71229357	71220819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299_71227997_71229250
transcript_130624.known	chr8	-	980	7	FSM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_6	19.0065778087482	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTTTCCTAGAGTTG	NA	False	NA	-15	True	AATAAA	-18	NA	71219307	71215418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563_71217747_71219152
transcript_130625.known	chr8	+	1009	1	FSM	ENSMUSG00000100691.2	ENSMUST00000191396.2	1009	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGGCTGTATCTGAACT	2325	False	NA	NA	False	NA	NA	NA	71229458	71230467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71229500_71230500
transcript_130626.known	chr8	-	2355	8	FSM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	35.6330504688314	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71292364	71287772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622_71291690_71291771
transcript_130627.nic	chr8	-	2253	7	ISM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	184	0	-18	0	intron_retention	FALSE	canonical	0	0	junction_5	38.4476556141232	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71292180	71287772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622
transcript_130633.known	chr8	-	2528	11	FSM	ENSMUSG00000002908.18	ENSMUST00000212611.2	2528	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10.4446158378372	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAACTGGAGTAAGATACAA	NA	False	NA	NA	False	NA	NA	NA	71315902	71296549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71297206_71299138_71299209_71299407_71299417_71300818_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71314308_71314418_71315591
transcript_130639.known	chr8	-	4047	10	FSM	ENSMUSG00000002908.18	ENSMUST00000110078.5	4047	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11.7378779077727	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTGTCTCAGTTTACCT	NA	False	NA	NA	False	NA	NA	NA	71309657	71294692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71297206_71299138_71299209_71299407_71299417_71300818_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71309575
transcript_130658.known	chr8	-	1356	5	FSM	ENSMUSG00000007721.7	ENSMUST00000007865.7	1356	5	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_4	97.9030132324843	359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATGTCTGTATGTGTG	NA	False	NA	-5	True	AATAAA	-18	NA	71326579	71320870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71321290_71321380_71321496_71321576_71321752_71322548_71322719_71326102
transcript_130661.known	chr8	-	2928	15	FSM	ENSMUSG00000000792.3	ENSMUST00000000809.3	2928	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.30149051130633	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGGCCTGTGGCGTAA	NA	False	NA	NA	False	NA	NA	NA	71345401	71335532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71336613_71337564_71337681_71338673_71338799_71340337_71340520_71340597_71340685_71341024_71341096_71341166_71341280_71341469_71341559_71341983_71342114_71342210_71342352_71342860_71343016_71343757_71343826_71343921_71343974_71344295_71344362_71344948
transcript_130662.known	chr8	-	700	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212709.2	700	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	13791.0578727667	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTGCTTGTTTGCTTC	NA	False	NA	-19	True	AATAAA	-11	NA	71349927	71348026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349772
transcript_130663.known	chr8	-	576	5	FSM	ENSMUSG00000045128.10	ENSMUST00000213053.2	576	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	13769.0618144447	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	False	NA	-51	True	NA	NA	NA	71350039	71348058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349976
transcript_130664.known	chr8	-	1260	5	FSM	ENSMUSG00000045128.10	ENSMUST00000054220.10	1260	5	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_4	7934.97659101777	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGGCATCTGGTCTATA	NA	False	NA	NA	False	NA	NA	NA	71350056	71347365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71350002
transcript_130666.known	chr8	-	795	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212019.2	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7846.8208565989	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350042	71348022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71348152_71348243_71348690_71348776_71348957_71350002
transcript_130667.known	chr8	-	679	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212796.2	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7152.95244403782	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350040	71348022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71348354_71348559_71348690_71348776_71348957_71350002
transcript_130669.nic	chr8	-	902	3	NIC	ENSMUSG00000045128.10	novel	795	4	NA	NA	-1	0	intron_retention	FALSE	canonical	3	16397	junction_2	1536.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350057	71348022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_71348690_71348776_71348957_71350002
transcript_130672.known	chr8	-	578	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212129.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	1	58	junction_3	13957.9624766654	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350044	71348022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348789_71348957_71350002
transcript_130681.known	chr8	+	3314	7	FSM	ENSMUSG00000019261.4	ENSMUST00000019405.4	3314	7	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	20.5236990384829	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTGGTCTTACTGTCTT	NA	False	NA	13	True	AATAAA	-13	NA	71358575	71370171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71358772_71363588_71363694_71364489_71364573_71365156_71365298_71365549_71367639_71368994_71369219_71369695
transcript_130683.known	chr8	+	1911	1	FSM	ENSMUSG00000019261.4	ENSMUST00000212823.2	1911	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCAAAACAAAAAAACAACAA	NA	False	NA	NA	False	NA	NA	NA	71358887	71360798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71358900_71360800
transcript_13069.known	chr10	+	1139	9	FSM	ENSMUSG00000020059.10	ENSMUST00000020252.10	1139	9	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.47391296443837	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTGGTTTCAGTATAT	NA	False	NA	3	True	AATAAA	-15	NA	88295430	88309097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537_88308643_88308766
transcript_130695.known	chr8	-	1452	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	696	False	NA	-9	True	NA	NA	NA	71725020	71703768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
transcript_130698.nic	chr8	-	1537	10	NIC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	153.13787864713	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	555	False	NA	-9	True	NA	NA	NA	71725161	71703768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71724927
transcript_13070.known	chr10	-	4863	9	FSM	ENSMUSG00000060002.15	ENSMUST00000117440.8	4863	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	46.4837001001426	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTAAAAGTAGTTTTGT	4021	False	NA	NA	False	ATTAAA	-19	NA	88339935	88305375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_88308847_88311287_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
transcript_130703.known	chr8	-	471	4	FSM	ENSMUSG00000035439.14	ENSMUST00000128833.2	471	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	232.32496398125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTTAACAAAATGTGTG	714	False	NA	NA	False	NA	NA	NA	71725002	71712870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71713155_71715695_71715749_71721869_71721929_71724927
transcript_130704.known	chr8	-	2013	11	FSM	ENSMUSG00000035439.14	ENSMUST00000035960.13	2013	11	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_6	24.6578587878185	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	138	False	NA	-9	True	NA	NA	NA	71725578	71703768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
transcript_130705.known	chr8	+	3614	19	FSM	ENSMUSG00000004677.18	ENSMUST00000212412.2	3614	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_18	41.6278337559124	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGTGGTCTTGCTGCT	NA	False	NA	12	True	AATAAA	-15	NA	71801421	71813353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71801546_71801578_71801839_71802778_71802834_71803570_71803693_71804530_71804659_71804813_71804990_71806385_71806485_71806605_71806780_71807157_71807200_71807359_71807472_71807881_71807956_71808338_71808532_71808609_71808739_71808928_71809035_71809164_71809297_71810756_71810881_71811259_71811308_71811606_71811738_71811968
transcript_130706.known	chr8	-	470	5	FSM	ENSMUSG00000035439.14	ENSMUST00000134361.8	470	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	209.237902876128	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCACATCTTTTATCAG	594	False	NA	NA	False	NA	NA	NA	71725122	71708708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71724927
transcript_130709.known	chr8	+	973	9	FSM	ENSMUSG00000002395.15	ENSMUST00000110054.8	973	9	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	224.605626599157	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819585	71822376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_13071.known	chr10	-	1447	9	FSM	ENSMUSG00000060002.15	ENSMUST00000139109.8	1447	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	64.1847918123912	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAACATTTCAGTGCCTC	4205	False	NA	-29	True	TATAAA	-12	NA	88339751	88308700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_88308847_88311194_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
transcript_13072.known	chr10	+	1169	8	FSM	ENSMUSG00000020059.10	ENSMUST00000125612.2	1169	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.98212288268514	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537
transcript_130721.known	chr8	+	854	8	FSM	ENSMUSG00000002395.15	ENSMUST00000019169.8	854	8	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	107.997165495683	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_130722.known	chr8	+	1000	8	FSM	ENSMUSG00000002395.15	ENSMUST00000154550.8	1000	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	297.542656862947	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71820014_71820141_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_130723.known	chr8	+	1611	4	FSM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	9.2736184954957	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGCCTTGAACCGAGAT	NA	False	NA	NA	False	NA	NA	NA	71823982	71826333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71824630_71825111_71825278_71825392_71825447_71825589
transcript_130724.nic	chr8	-	2983	4	NIC	ENSMUSG00000002393.15	novel	2218	4	NA	NA	-16	1	intron_retention	FALSE	canonical	2	6	junction_1	61.937244225282	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTCAGCCTCTGCTTTC	NA	False	NA	-7	True	AATAAA	-13	NA	71834620	71826769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_71828147_71828392_71828918_71831032_71831128_71833634
transcript_130729.known	chr8	-	2218	4	FSM	ENSMUSG00000002393.15	ENSMUST00000002466.9	2218	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	9.56846672960488	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTCAGCCTCTGCTTT	NA	False	NA	-8	True	AATAAA	-12	NA	71834604	71826770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71827399_71828392_71828918_71831032_71831128_71833634
transcript_130732.known	chr8	+	2179	3	FSM	ENSMUSG00000002396.9	ENSMUST00000110051.2	2179	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	15.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAGAAATCAGTCT	NA	False	NA	NA	False	AATAAA	-24	NA	71823941	71827026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71824630_71825392_71825447_71825589
transcript_130733.nic	chr8	-	3226	3	NIC	ENSMUSG00000002393.15	novel	2218	4	NA	NA	-16	-2	intron_retention	FALSE	canonical	3	125	junction_1	11	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTGGTCAGCCTCTGCT	NA	False	NA	-10	True	AATAAA	-10	NA	71834620	71826772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_71828918_71831032_71831128_71833634
transcript_13074.known	chr10	+	927	8	FSM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	38.7767024521326	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537_88308643_88308766
transcript_130742.known	chr8	+	1433	9	FSM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	29.4573314303927	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGTATGGCTTCAGGC	NA	False	NA	89	True	ACTAAA	-7	NA	71849504	71857263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71849665_71850322_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
transcript_130751.nic	chr8	+	1529	3	ISM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	-24	5230	-24	-567	5prime_fragment	FALSE	canonical	3	350	junction_2	7	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCACAGGTGTGCCCAG	NA	False	NA	NA	False	NA	NA	NA	71849480	71852033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_71849665_71850322_71850670_71851035
transcript_130753.known	chr8	+	2136	9	FSM	ENSMUSG00000046295.14	ENSMUST00000119976.8	2136	9	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_4	30.5366071298041	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858653	71862548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859856_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_130755.known	chr8	+	1641	9	FSM	ENSMUSG00000046295.14	ENSMUST00000120725.2	1641	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	33.431833632034	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGACAGTGTGTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	71858667	71862127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859916_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_13076.known	chr10	-	3898	8	FSM	ENSMUSG00000060002.15	ENSMUST00000020253.15	3898	8	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_3	42.2794396889098	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTCATATTTCTGCAAT	4124	False	NA	-7	True	AATAAA	-18	NA	88339832	88308678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
transcript_130769.known	chr8	+	1935	8	FSM	ENSMUSG00000046295.14	ENSMUST00000124520.8	1935	8	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	7.9256751466744	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCAGAGGACAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	71858665	71862120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_130777.known	chr8	+	2410	7	FSM	ENSMUSG00000046295.14	ENSMUST00000125290.8	2410	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	8.31998931623246	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAACAACAAAGCCA	NA	False	NA	-18	True	NA	NA	NA	71858659	71862512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_130787.nic	chr8	+	1708	4	ISM	ENSMUSG00000046295.14	ENSMUST00000125290.8	2410	7	-28	1624	-22	-913	5prime_fragment	FALSE	canonical	3	99	junction_2	7.25718035235908	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCCCAACAAACAGTAGGAA	NA	False	NA	NA	False	NA	NA	NA	71858631	71860888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_71858742_71858830_71858984_71859322_71860394_71860514
transcript_130792.known	chr8	-	1978	5	FSM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	6.41774882649672	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCTCCAATTTGTGATT	NA	False	NA	-6	True	NA	NA	NA	71916299	71909348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71910022_71910681_71910899_71911021_71911193_71913889_71914617_71916109
transcript_130793.known	chr8	+	607	2	FSM	ENSMUSG00000034880.8	ENSMUST00000048914.8	607	2	0	0	0	0	multi-exon	FALSE	canonical	3	904	junction_1	0	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTACGTATGTATTAACT	8920	False	NA	18	True	AATAAA	-18	NA	71917602	71918391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71917712_71917893
transcript_130795.known	chr8	-	3653	17	FSM	ENSMUSG00000034863.10	ENSMUST00000093450.6	3653	17	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	6.28987281270456	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTCGAGGTCAGAGCAGT	NA	False	NA	-21	True	AATAAA	-16	NA	71938607	71928662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71929566_71931364_71931476_71931570_71931703_71931794_71931987_71933079_71933887_71934595_71934671_71934776_71934833_71934927_71935055_71935150_71935304_71935623_71935786_71935883_71936012_71936091_71936209_71936911_71937009_71937077_71937217_71937392_71937526_71937643_71937755_71938397
transcript_130800.known	chr8	+	1929	5	FSM	ENSMUSG00000074247.11	ENSMUST00000135052.8	1929	5	0	0	0	0	multi-exon	FALSE	canonical	2	81	junction_1	303.826739277503	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71921970_71924684_71924762_71924838_71924891_71926418_71926481_71927131
transcript_130804.known	chr8	+	1881	4	FSM	ENSMUSG00000074247.11	ENSMUST00000130098.8	1881	4	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	319.275568888208	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71921970_71924680_71924762_71926418_71926481_71927131
transcript_130806.known	chr8	+	874	4	FSM	ENSMUSG00000074247.11	ENSMUST00000098645.11	874	4	0	0	0	0	multi-exon	FALSE	canonical	2	515	junction_3	146.765875537273	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGCCCGTGCCAGGGCA	NA	False	NA	NA	False	NA	NA	NA	71921854	71927618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71921970_71924680_71924891_71926418_71926481_71927131
transcript_130809.known	chr8	+	1865	4	FSM	ENSMUSG00000074247.11	ENSMUST00000147642.2	1865	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	377.602966090045	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921848	71928742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71927131
transcript_13081.known	chr10	-	852	4	FSM	ENSMUSG00000060002.15	ENSMUST00000073783.6	852	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	64.2201076160903	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTTTCTTCCATATCTT	4169	False	NA	NA	False	NA	NA	NA	88339787	88322903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_88323125_88324243_88324386_88325442_88325591_88339446
transcript_130811.known	chr8	+	2392	9	FSM	ENSMUSG00000007610.16	ENSMUST00000127741.2	2392	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71941394	71946044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943298_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
transcript_130816.known	chr8	+	2800	9	FSM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71940746	71946044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
transcript_13082.known	chr10	-	1043	4	FSM	ENSMUSG00000060002.15	ENSMUST00000117579.8	1043	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	100.223084499863	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCCAACAGTCTTAGC	4176	False	NA	NA	False	NA	NA	NA	88339780	88321454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_88321874_88324243_88324386_88325442_88325591_88339446
transcript_130820.nic	chr8	+	1397	8	ISM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	621	965	3	-965	5prime_fragment	FALSE	canonical	0	0	junction_4	25.2303671905787	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCAGCCTCAGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	71941367	71945079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720
transcript_130825.known	chr8	+	2109	8	FSM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	25.5774135055258	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71941364	71946044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943709_71943854_71944068_71944235_71944720_71945000_71945182
transcript_130834.known	chr8	+	2830	6	FSM	ENSMUSG00000007610.16	ENSMUST00000124349.8	2830	6	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	10.7962956610126	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71941386	71946044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71944235_71944720_71945000_71945182
transcript_130838.known	chr8	-	792	5	FSM	ENSMUSG00000046718.9	ENSMUST00000051672.9	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_3	21.2176223927187	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTGCTTCTAAGTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	71990100	71986898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_71987125_71987315_71987437_71988429_71988470_71989002_71989079_71989771
transcript_130844.known	chr8	+	1062	9	FSM	ENSMUSG00000031813.9	ENSMUST00000034272.9	1062	9	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	32.3177582762171	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGAGTGTATTGTTTT	NA	False	NA	11	True	AGTAAA	-18	NA	71995573	72000670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
transcript_130852.known	chr8	+	1519	2	FSM	ENSMUSG00000031813.9	ENSMUST00000212341.2	1519	2	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGGCTGGAGCATTAGC	NA	False	NA	NA	False	NA	NA	NA	71995571	71997165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_71995702_71995776
transcript_130853.known	chr8	-	1604	4	FSM	ENSMUSG00000043664.8	ENSMUST00000052072.8	1604	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTTGTGTGGTTTCAT	NA	False	NA	NA	False	AATAAA	-12	NA	72011515	72006881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_72007787_72008401_72008633_72010463_72010550_72011133
transcript_13086.known	chr10	-	646	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGGCCAGAGCCCTGA	NA	False	NA	NA	False	NA	NA	NA	88520877	88511751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
transcript_130864.known	chr8	+	2730	13	FSM	ENSMUSG00000031808.8	ENSMUST00000212889.2	2730	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	50.6959208308606	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTGGCTGTTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	72021525	72039349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72021668_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
transcript_130867.nic	chr8	+	2857	13	NIC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	-106	0	combination_of_known_junctions	FALSE	canonical	1	37	junction_11	40.1631222502545	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTGGCTGTTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	72022216	72039349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_72022486_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
transcript_130868.nic	chr8	+	3365	13	NIC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	1	37	junction_11	40.1631222502545	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCTGCCAGAGCACAGCG	NA	False	NA	19	True	AATAAA	-15	NA	72022305	72039946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_72022486_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
transcript_130876.nnic	chr8	+	2673	13	NNC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	-174	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	50.2843995025628	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTGGCTGTTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	72023124	72039349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_72023210_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
transcript_130890.nic	chr8	+	2645	12	NIC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	1	12	junction_1	50.3216102962725	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTGGCTGTTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	72022260	72039349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_72022486_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
transcript_130891.nic	chr8	+	3179	12	NIC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	12	junction_1	50.3216102962725	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCTGCCAGAGCACAGCG	NA	False	NA	19	True	AATAAA	-15	NA	72022323	72039946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_72022486_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
transcript_130895.nic	chr8	+	3647	12	ISM	ENSMUSG00000031808.8	ENSMUST00000034267.5	2795	14	735	3	-17	0	3prime_fragment	FALSE	canonical	1	37	junction_10	35.20847005532	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTGGCTGTTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	72022305	72039349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
transcript_130896.nic	chr8	+	3336	12	ISM	ENSMUSG00000031808.8	ENSMUST00000034267.5	2795	14	1643	-594	-85	0	3prime_fragment	FALSE	canonical	1	37	junction_10	35.20847005532	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCTGCCAGAGCACAGCG	NA	False	NA	19	True	AATAAA	-15	NA	72023213	72039946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
transcript_1309.known	chr1	-	4620	15	FSM	ENSMUSG00000057363.13	ENSMUST00000126008.8	4620	15	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_12	17.2527726254451	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGTAATGGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	43866960	43786125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
transcript_13092.nnic	chr10	-	1728	5	NIC	ENSMUSG00000004359.17	novel	1763	6	NA	NA	-60	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520937	88510633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
transcript_130934.known	chr8	+	2809	4	FSM	ENSMUSG00000031808.8	ENSMUST00000211886.2	2809	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	7.36357401145817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	72023298	72035093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72023533_72032047_72032713_72032788_72032859_72033253
transcript_130949.known	chr8	+	893	5	FSM	ENSMUSG00000031807.11	ENSMUST00000034264.11	893	5	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_2	58.7132864009502	1077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044819	72048913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72045149_72046727_72046836_72047312_72047415_72047704_72047846_72048700
transcript_13095.nnic	chr10	-	1231	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-60	3	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTGTAGACTGTCTCTT	NA	False	NA	-2	True	AATAAA	-25	NA	88520937	88511130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
transcript_130951.known	chr8	+	1062	5	FSM	ENSMUSG00000031807.11	ENSMUST00000143441.2	1062	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	254.639941878724	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044934	72048913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72045433_72046727_72046836_72047312_72047415_72047704_72047846_72048700
transcript_130953.known	chr8	+	2688	3	FSM	ENSMUSG00000031807.11	ENSMUST00000123240.2	2688	3	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_1	62.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATAAAAAAGAATTT	NA	False	NA	NA	False	NA	NA	NA	72044854	72048309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72046836_72047312_72047415_72047704
transcript_130954.known	chr8	-	10255	44	FSM	ENSMUSG00000034799.17	ENSMUST00000030170.15	10255	44	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	15.3940841186415	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTAGACTCTGTCATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	72124401	72077060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_72082368_72083159_72083320_72083597_72083691_72087160_72087309_72087532_72087614_72087813_72087871_72089181_72089212_72090415_72090455_72091860_72091867_72092343_72092468_72093999_72094153_72094496_72094586_72094772_72094851_72095735_72095820_72097196_72097341_72097516_72097614_72098328_72098456_72098541_72098628_72100544_72100679_72101541_72101677_72102191_72102282_72102497_72102567_72103170_72103322_72103767_72103932_72104596_72104713_72104877_72105048_72105161_72105304_72106031_72106260_72107447_72107668_72107776_72107849_72108146_72108153_72108306_72108386_72108898_72108946_72110646_72110756_72110899_72111446_72113085_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72119284_72119315_72124269
transcript_130969.known	chr8	+	3207	12	FSM	ENSMUSG00000034807.10	ENSMUST00000047903.10	3207	12	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_9	75.1827525499814	1219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGGGTTTGGTGCCCC	NA	False	NA	30	True	ATTAAA	-22	NA	72063641	72077555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72064089_72064727_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72074541_72075346_72075475_72075733_72075941_72076136
transcript_13098.nic	chr10	-	2253	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-71	3	intron_retention	FALSE	canonical	3	380	junction_3	53.1859943970215	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTGTAGACTGTCTCTT	NA	False	NA	-2	True	AATAAA	-25	NA	88520948	88511130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_88511933_88513361_88514499_88515720_88515818_88516340_88516437_88520827
transcript_130981.nic	chr8	+	4055	11	NIC	ENSMUSG00000034807.10	novel	3207	12	NA	NA	-42	0	intron_retention	FALSE	canonical	3	838	junction_7	59.7648726259832	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGGGTTTGGTGCCCC	NA	False	NA	30	True	ATTAAA	-22	NA	72063599	72077555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_72064089_72064727_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72075475_72075733_72075941_72076136
transcript_13099.nnic	chr10	-	1174	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-16	3	combination_of_known_splicesites	FALSE	canonical	3	38	junction_1	186.499329757509	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTGTAGACTGTCTCTT	NA	False	NA	-2	True	AATAAA	-25	NA	88520893	88511130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_88511933_88514385_88514499_88515720_88515818_88516340_88516437_88520827
transcript_13100.nnic	chr10	-	957	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-60	-271	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGCAGAGAGACACAGAAC	NA	False	NA	NA	False	AAAACA	-26	NA	88520937	88511404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
transcript_131004.known	chr8	-	944	8	FSM	ENSMUSG00000034799.17	ENSMUST00000176777.8	944	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	16.3682120998886	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTATATATAACAAGTTG	NA	False	NA	3	True	NA	NA	NA	72124385	72112984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_72113294_72114462_72114496_72115124_72115180_72115483_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
transcript_131017.nnic	chr8	+	3028	20	NNC	ENSMUSG00000031805.18	novel	4049	22	NA	NA	1725	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	58.1943919773867	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTTCCCCCCTGGG	NA	False	NA	10	True	AATAAA	-13	NA	72132703	72143219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_72132862_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683_72140807_72142815
transcript_131030.known	chr8	+	4019	25	FSM	ENSMUSG00000031805.18	ENSMUST00000051995.14	4019	25	0	0	0	0	multi-exon	TRUE	canonical	3	125	junction_24	33.9656689418399	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTTCCCCCCTGGG	NA	False	NA	10	True	AATAAA	-13	NA	72128939	72143219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683_72140807_72142815
transcript_131031.known	chr8	+	623	2	FSM	ENSMUSG00000079019.3	ENSMUST00000034261.8	623	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTTCCCCCCTGGG	3210	False	NA	10	True	AATAAA	-13	NA	72141857	72143219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72142077_72142815
transcript_131037.nnic	chr8	-	2661	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-18	-456	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	77	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCGGTAATATTTCTGT	8503	False	NA	-5	True	NA	NA	NA	72154451	72143855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_72145800_72145960_72146544_72154317
transcript_131038.known	chr8	-	3055	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	27	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACTGTCTATTGTGCAC	8521	False	NA	NA	False	NA	NA	NA	72154433	72143399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_72145800_72145960_72146544_72154361
transcript_131042.nnic	chr8	-	2711	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-1808	-456	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	71.5	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCGGTAATATTTCTGT	6713	False	NA	-5	True	NA	NA	NA	72156241	72143855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_72145800_72145960_72146544_72156057
transcript_131043.nnic	chr8	-	2632	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-1753	-456	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	75.5	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCGGTAATATTTCTGT	6768	False	NA	-5	True	NA	NA	NA	72156186	72143855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_72145800_72145960_72146544_72156081
transcript_131058.nic	chr8	-	2955	28	NIC	ENSMUSG00000070000.14	novel	3188	28	NA	NA	-22	0	combination_of_known_junctions	FALSE	non_canonical	2	21	junction_17	33.2694861782146	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAATAAAGAGGAATCC	NA	False	NA	-15	True	AATAAA	-10	NA	72178382	72161296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_72161476_72161569_72161735_72161973_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167522_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
transcript_131070.nic	chr8	-	3194	27	NIC	ENSMUSG00000070000.14	novel	3351	27	NA	NA	-22	0	intron_retention	FALSE	non_canonical	2	21	junction_16	33.8988226567648	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAATAAAGAGGAATCC	NA	False	NA	-15	True	AATAAA	-10	NA	72178382	72161296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_72161476_72161569_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167522_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
transcript_131077.nic	chr8	-	3413	26	NIC	ENSMUSG00000070000.14	novel	2966	26	NA	NA	-22	0	intron_retention	FALSE	non_canonical	2	21	junction_15	34.5495817630257	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAATAAAGAGGAATCC	NA	False	NA	-15	True	AATAAA	-10	NA	72178382	72161296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_72161476_72161569_72162030_72162218_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167522_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
transcript_13109.known	chr10	+	2080	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	0	0	0	0	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	False	NA	14	True	AATAAA	-23	NA	88566929	88579956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
transcript_131091.known	chr8	-	3188	28	FSM	ENSMUSG00000070000.14	ENSMUST00000146100.8	3188	28	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_17	36.1995308763152	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATAGCTGTGATTTTT	NA	False	NA	-6	True	NA	NA	NA	72178360	72161037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_72161476_72161569_72161735_72161973_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
transcript_131092.known	chr8	-	3351	27	FSM	ENSMUSG00000070000.14	ENSMUST00000143699.8	3351	27	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_16	36.8870216588966	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAACCATAAAATTATTTC	NA	False	NA	-32	True	NA	NA	NA	72178310	72161063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_72161476_72161569_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
transcript_131093.known	chr8	+	7186	4	FSM	ENSMUSG00000056019.13	ENSMUST00000188685.7	7186	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	3.85861230093008	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCGCATGTTGGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	72635862	72649571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72636053_72641107_72641235_72641444_72641506_72642763
transcript_131096.known	chr8	+	2920	4	FSM	ENSMUSG00000066880.16	ENSMUST00000119003.2	2920	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	7.78888096369861	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGTGTTCTATTGCTGT	NA	False	NA	29	True	AATAAA	-17	NA	72676695	72688473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72676817_72682045_72682173_72682981_72683043_72685862
transcript_131099.known	chr8	+	2713	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704914	72724177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
transcript_13110.known	chr10	-	8821	62	FSM	ENSMUSG00000004356.9	ENSMUST00000004470.9	8821	62	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_48	34.745281900583	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTGCCTGAAAGACTATG	NA	False	NA	-1	True	ATTAAA	-16	NA	88662666	88582468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_88582922_88583137_88583284_88584087_88584215_88585121_88585404_88586513_88586586_88587206_88587395_88588768_88588902_88589497_88589630_88590338_88590522_88590612_88590683_88591049_88591130_88592886_88592998_88593718_88593851_88594165_88594337_88596731_88596849_88597604_88597747_88598630_88598798_88600535_88600704_88601272_88601372_88602924_88603082_88603314_88603455_88604496_88604787_88606233_88606317_88606546_88606687_88607723_88607862_88608289_88608431_88608713_88608870_88610533_88610687_88610786_88610838_88611070_88611215_88612025_88612114_88613266_88613412_88614084_88614309_88616809_88616890_88618434_88618579_88621851_88622061_88623316_88623484_88626912_88627039_88627545_88627632_88628460_88628552_88631238_88631428_88634142_88634384_88634545_88634626_88636978_88637056_88640384_88640544_88641997_88642061_88643188_88643340_88644943_88645050_88645576_88645666_88645791_88645948_88649778_88649958_88651730_88651809_88652739_88652875_88653040_88653188_88653727_88653884_88654350_88654489_88655129_88655212_88656688_88656878_88657601_88657735_88657865_88657933_88661279_88661361_88662467
transcript_131100.known	chr8	+	504	4	FSM	ENSMUSG00000052446.18	ENSMUST00000145256.8	504	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	168.256418071413	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATATGTAAAGAAATAC	NA	False	NA	NA	False	AATACA	-16	NA	72704913	72721897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72705005_72719637_72719835_72719943_72720005_72721742
transcript_131103.known	chr8	+	698	4	FSM	ENSMUSG00000052446.18	ENSMUST00000151168.2	698	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	148.102066907327	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCCTTCAGTTACCGG	NA	False	NA	NA	False	NA	NA	NA	72707290	72722020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72707523_72719637_72719765_72719943_72720005_72721742
transcript_131104.known	chr8	+	416	3	FSM	ENSMUSG00000052446.18	ENSMUST00000139781.8	416	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	148.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTGAGAAAGCCTTCAG	NA	False	NA	NA	False	NA	NA	NA	72704920	72722013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72705005_72719943_72720005_72721742
transcript_131105.known	chr8	+	701	2	FSM	ENSMUSG00000052446.18	ENSMUST00000144807.2	701	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATTCCAGCCATGTTCAA	NA	False	NA	NA	False	NA	NA	NA	72704923	72722362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72705005_72721742
transcript_131106.known	chr8	+	422	3	FSM	ENSMUSG00000052446.18	ENSMUST00000147033.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	200	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTTTGTTTGTTTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	72704924	72720088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72705005_72719637_72719835_72719943
transcript_131110.known	chr8	+	2158	8	FSM	ENSMUSG00000031799.11	ENSMUST00000003575.11	2158	8	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_1	35.3714978074559	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGATTTATTCTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	72889072	72906986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
transcript_131114.known	chr8	+	2044	8	FSM	ENSMUSG00000031799.11	ENSMUST00000238492.2	2044	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	228.433708510092	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGGATTTATTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	72889651	72906984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
transcript_131119.known	chr8	+	2063	1	FSM	ENSMUSG00000031799.11	ENSMUST00000238752.2	2063	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AACAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	72889101	72891164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72889100_72891200
transcript_131123.known	chr8	+	4550	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	0	0	0	0	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCCTGCAGTAGCAAGTT	NA	False	NA	NA	False	NA	NA	NA	72915043	72937748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
transcript_131129.known	chr8	+	1824	6	FSM	ENSMUSG00000062007.14	ENSMUST00000072097.14	1824	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	2.28035085019828	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTGCATCATTTGCG	NA	False	NA	NA	False	NA	NA	NA	72943481	72955371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72943532_72947282_72947430_72950639_72950730_72951582_72951749_72952211_72952332_72954120
transcript_131133.known	chr8	+	2564	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGCTGCAGTCCTAAAAA	NA	False	NA	NA	False	NA	NA	NA	72973573	72978262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
transcript_131138.known	chr8	+	3387	3	FSM	ENSMUSG00000003039.10	ENSMUST00000212117.2	3387	3	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_2	33.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTTTGTGCGTGAAAC	NA	False	NA	18	True	AATATA	-14	NA	72973607	72977274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72973705_72973784_72975826_72976025
transcript_131146.known	chr8	+	2084	12	FSM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_9	40.3802177244139	1173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCTTCTCTCTGTGT	NA	False	NA	19	True	ATTAAA	-20	NA	72993861	73011229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
transcript_131170.known	chr8	-	1151	1	FSM	ENSMUSG00000070713.6	ENSMUST00000075602.8	1151	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	527	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAAAAAT	NA	False	NA	NA	False	AATAAA	-22	NA	73059104	73057953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73058000_73059100
transcript_13118.known	chr10	-	6748	11	FSM	ENSMUSG00000074802.12	ENSMUST00000099374.9	6748	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	13.3450365304858	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTGCCTAACTTTATAA	NA	False	NA	49	True	AATAAA	-18	NA	89279829	89244684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270151_89270224_89272364_89272472_89279716
transcript_131183.known	chr8	+	1847	3	FSM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	0	0	0	0	multi-exon	FALSE	canonical	3	2955	junction_2	16	3586	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTTGGGGTTTAGCCAA	NA	False	NA	21	True	ATTAAA	-16	NA	73072876	73075500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_73072994_73073269_73074087_73074587
transcript_13119.known	chr10	-	6305	11	FSM	ENSMUSG00000074802.12	ENSMUST00000105298.3	6305	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	9.03382532485547	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTTGCTTTTTTAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	89279829	89245124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270154_89270224_89272364_89272472_89279716
transcript_131197.known	chr8	-	3129	24	FSM	ENSMUSG00000006276.11	ENSMUST00000163643.3	3129	24	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	82.9540606689901	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAGACTATCTTCT	NA	False	NA	NA	False	TATAAA	-39	NA	73175304	73094842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_131202.nnic	chr8	-	2945	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-18	4	combination_of_known_splicesites	FALSE	canonical	3	42	junction_1	80.7011756547953	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	NA	False	NA	NA	False	TATAAA	-43	NA	73175322	73094838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_73095369_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_131207.nic	chr8	-	3045	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_2	86.0488161471765	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAGACTATCTTCT	NA	False	NA	NA	False	TATAAA	-39	NA	73175353	73094842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_73095369_73099809_73100016_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_13121.known	chr10	-	3566	18	FSM	ENSMUSG00000069539.12	ENSMUST00000092227.12	3566	18	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTATGCTTAGTAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	89522130	89475813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_89476979_89477852_89477973_89481323_89481417_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
transcript_131215.nnic	chr8	-	2929	22	NNC	ENSMUSG00000006276.11	novel	2686	22	NA	NA	-121	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	95.1691893586081	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACATGAGACTATCTT	NA	False	NA	NA	False	TATAAA	-37	NA	73175425	73094844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126849_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_131217.nic	chr8	-	2909	22	NIC	ENSMUSG00000006276.11	novel	2686	22	NA	NA	-121	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	69.7814859566126	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACATGAGACTATCTT	NA	False	NA	NA	False	TATAAA	-37	NA	73175425	73094844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_131219.known	chr8	-	2686	22	FSM	ENSMUSG00000006276.11	ENSMUST00000212121.2	2686	22	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	89.8414577371977	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACATGAGACTATCTT	NA	False	NA	NA	False	TATAAA	-37	NA	73175295	73094844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132927_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_13122.known	chr10	-	4817	18	FSM	ENSMUSG00000069539.12	ENSMUST00000174252.8	4817	18	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTTTGGAACAGTTCAG	NA	False	NA	0	True	AATAAA	-17	NA	89522147	89474582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_89476979_89477852_89477973_89481323_89481420_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
transcript_131223.known	chr8	-	2620	22	FSM	ENSMUSG00000006276.11	ENSMUST00000212950.2	2620	22	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	58.0603720511769	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCTATCTAGTAGCCTC	NA	False	NA	NA	False	NA	NA	NA	73175282	73111911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_131230.known	chr8	-	3376	16	FSM	ENSMUSG00000006276.11	ENSMUST00000212590.2	3376	16	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	26.4222128772995	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTTTGTTCAGTGTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	73175299	73131261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_131232.known	chr8	-	1641	4	FSM	ENSMUSG00000006276.11	ENSMUST00000211977.2	1641	4	0	0	0	0	multi-exon	FALSE	canonical	3	342	junction_3	24.5356882927706	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATTAAAAAAAAATAGATT	NA	False	NA	NA	False	NA	NA	NA	73175285	73151425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73152898_73153520_73153611_73154035_73154078_73175248
transcript_131233.known	chr8	-	1769	9	FSM	ENSMUSG00000019732.15	ENSMUST00000019876.12	1769	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	4.64858849544676	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATATTTTGTTT	9998	False	NA	NA	False	AATAAA	-15	NA	73197714	73178019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73178600_73179610_73179704_73181005_73181138_73181913_73182010_73185216_73185406_73188633_73188729_73192275_73192480_73197238_73197341_73197436
transcript_131237.known	chr8	-	3646	18	FSM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_13	64.9317448394025	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAGACACTTGATTTTT	NA	False	NA	-2	True	AATAAA	-31	NA	73229070	73214473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
transcript_131238.known	chr8	-	3713	18	FSM	ENSMUSG00000052488.8	ENSMUST00000079510.6	3713	18	0	0	0	0	multi-exon	TRUE	canonical	3	101	junction_13	118.126552277382	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTTCCTCTAGCTGT	NA	False	NA	-12	True	AATAAA	-10	NA	73228963	73214332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
transcript_131251.nic	chr8	-	2967	9	ISM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	63	4199	-2	3062	5prime_fragment	FALSE	canonical	3	416	junction_4	64.1482657598785	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGACAGGTGTTCCAGGC	NA	False	NA	NA	False	NA	NA	NA	73229007	73218672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
transcript_131255.known	chr8	+	2887	8	FSM	ENSMUSG00000052794.14	ENSMUST00000064853.13	2887	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	11.7334338276463	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTCAGGAGTCAGAAAATC	NA	False	NA	NA	False	ATTAAA	-15	NA	73197723	73214845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
transcript_131257.known	chr8	+	2373	8	FSM	ENSMUSG00000052794.14	ENSMUST00000121902.2	2373	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	27.5251276665745	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGAGGACTCTGCATTT	NA	False	NA	NA	False	AAAACA	-32	NA	73197775	73214485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73209059_73209412_73211816_73211913_73212446_73212614_73213872
transcript_131266.known	chr8	-	912	2	FSM	ENSMUSG00000052488.8	ENSMUST00000212586.2	912	2	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73229005	73227821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73228630_73228901
transcript_131270.known	chr8	-	4383	6	FSM	ENSMUSG00000019731.14	ENSMUST00000152080.8	4383	6	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_3	20.3901937214927	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGGAGTTTGGTTCTGGT	NA	False	NA	-6	True	AATAAA	-15	NA	73246458	73234484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73237838_73238504_73238751_73241964_73242091_73243295_73243434_73245685_73245757_73246009
transcript_131278.known	chr8	-	2997	3	FSM	ENSMUSG00000045248.7	ENSMUST00000058534.7	2997	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	2.5	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTTGGAATCATT	3617	False	NA	-5	True	AATAAA	-15	NA	73302114	73248404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73250951_73251366_73251442_73301738
transcript_131280.known	chr8	+	2994	2	FSM	ENSMUSG00000097000.3	ENSMUST00000181452.2	2994	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTCTTTAAAAATTATCA	NA	False	NA	NA	False	AATAAA	-14	NA	73246777	73259343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_73246895_73256466
transcript_131281.known	chr8	+	1998	1	FSM	ENSMUSG00000097000.3	ENSMUST00000212699.2	1998	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCTGCAGCATTTCTT	NA	False	NA	NA	False	AATAAA	-12	NA	73246787	73248785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_73246800_73248800
transcript_131285.known	chr8	-	2892	5	FSM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_4	37.7582772382427	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTCTATCTACTCCTAT	NA	False	NA	1	True	AATAAA	-27	NA	73324932	73319031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717_73324760_73324847
transcript_131292.known	chr8	+	2124	6	FSM	ENSMUSG00000031791.9	ENSMUST00000034244.9	2124	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.51821577561874	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTTTTTCTTTATTCA	NA	False	NA	NA	False	AATAAA	-18	NA	73325916	73341126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_73326072_73333406_73333564_73333803_73333989_73335028_73335117_73338543_73338662_73339705
transcript_131293.known	chr8	+	4115	19	FSM	ENSMUSG00000031622.17	ENSMUST00000004494.16	4115	19	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_6	282.896831519815	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTCAGGGTCCTTCGTC	NA	False	NA	26	True	ATTAAA	-17	NA	73449915	73484829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73468101_73468192_73468437_73468557_73471085_73471294_73471521_73471639_73473037_73473277_73474312_73474497_73476346_73476897_73477063_73477234_73479794_73479969_73480172_73480266_73483100_73483196_73483475_73483681_73483802
transcript_131294.known	chr8	+	1024	7	FSM	ENSMUSG00000031622.17	ENSMUST00000109950.5	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_5	27.2197844713485	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTTATGTGCAGCAGT	NA	False	NA	24	True	AATAAA	-21	NA	73449912	73466534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73466357
transcript_131296.known	chr8	-	4746	16	FSM	ENSMUSG00000004383.19	ENSMUST00000212459.2	4746	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	11.2834194974554	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTCTTCTCCCTCCCA	NA	False	NA	-8	True	AATAAA	-17	NA	74080168	73541226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034_73564314_73578752_73578917_73585817_73585974_73609835_73609962_73612318_73612432_73638683_73638789_73774921_73775094_73825457_73825582_73843030_73843114_73858458_73858761_73940752_73940941_74066821_74066915_74079093
transcript_131297.known	chr8	-	3669	15	FSM	ENSMUSG00000004383.19	ENSMUST00000004497.11	3669	15	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_14	8.74000887310996	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTCTTCTCCCTCCCA	NA	False	NA	-8	True	AATAAA	-17	NA	74079184	73541226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034_73564314_73578752_73578917_73585817_73585974_73609835_73609962_73612318_73612432_73638683_73638789_73774921_73775094_73825457_73825582_73843030_73843114_73858458_73858761_73940752_73940941_74079093
transcript_131302.known	chr8	-	4647	15	FSM	ENSMUSG00000004383.19	ENSMUST00000119826.7	4647	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	10.2152846664362	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTCTTCTCCCTCCCA	NA	False	NA	-8	True	AATAAA	-17	NA	74080168	73541226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_73542650_73544703_73544900_73550320_73550468_73564034_73564314_73578752_73578917_73585817_73585974_73609835_73609962_73612318_73612432_73638683_73638789_73774921_73775094_73825457_73825582_73843030_73843114_73858458_73858761_73940752_73940941_74079099
transcript_131303.known	chr8	+	1769	16	FSM	ENSMUSG00000042870.16	ENSMUST00000078847.13	1769	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	108.765680861811	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTGCCTTCTTCCCA	NA	False	NA	NA	False	NA	NA	NA	75760364	75796211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75785816_75785889_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
transcript_131305.known	chr8	+	2267	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	29.4884965464743	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTCTGGCGGAAGCAA	NA	False	NA	12	True	AATAAA	-25	NA	75760332	75796749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
transcript_131315.known	chr8	+	3989	12	FSM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	21.8858798209528	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCTTAGCTGTCTTT	NA	False	NA	32	True	ATTAAA	-23	NA	75720306	75758606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
transcript_131321.known	chr8	+	4191	11	FSM	ENSMUSG00000034518.15	ENSMUST00000041759.14	4191	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	33.0128762757806	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAGTCCAGTCTTAGCT	NA	False	NA	26	True	ATTAAA	-17	NA	75719983	75758600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
transcript_131327.nic	chr8	+	3909	11	NIC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	24.8185414559357	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCTTAGCTGTCTTT	NA	False	NA	32	True	ATTAAA	-23	NA	75720282	75758606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_75720378_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
transcript_131334.known	chr8	+	2656	7	FSM	ENSMUSG00000034518.15	ENSMUST00000109940.2	2656	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	40.0489284084689	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTACAGTTGTATAAAGAAA	NA	False	NA	-33	True	AATAAA	-25	NA	75742849	75758541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75743035_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
transcript_131338.nic	chr8	+	1265	6	ISM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	-35	30617	-35	53	5prime_fragment	FALSE	canonical	3	57	junction_2	17.0926884953772	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGCAAAAAGAAGAAGGACA	NA	False	NA	NA	False	NA	NA	NA	75720271	75727989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277
transcript_131339.nic	chr8	+	1450	6	ISM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	-35	30432	-35	238	5prime_fragment	FALSE	canonical	3	57	junction_2	17.0926884953772	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGAAGACAAAGACAGAGAC	NA	False	NA	NA	False	NA	NA	NA	75720271	75728174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277
transcript_13134.known	chr10	-	2814	3	FSM	ENSMUSG00000069539.12	ENSMUST00000174575.2	2814	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAACAAAAAC	NA	False	NA	NA	False	ATTAAA	-32	NA	89522130	89503286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_89505665_89514139_89514345_89521899
transcript_131341.nic	chr8	+	1150	5	NIC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	-24	53	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	24.8432586429397	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGCAAAAAGAAGAAGGACA	NA	False	NA	NA	False	NA	NA	NA	75720282	75727989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_75720378_75726187_75726337_75726440_75726520_75726626_75726742_75727277
transcript_131343.known	chr8	+	512	4	FSM	ENSMUSG00000034518.15	ENSMUST00000211863.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	32.7244387100664	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAATGCCCACAAATCCA	NA	False	NA	NA	False	NA	NA	NA	75720322	75727506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75720378_75726187_75726337_75726440_75726520_75727277
transcript_131346.known	chr8	+	1569	5	FSM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.358456772798	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGTGCATTCATGTC	NA	False	NA	10	True	AATAAA	-19	NA	75820248	75827217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513
transcript_131347.nnic	chr8	+	1606	5	NNC	ENSMUSG00000005413.9	novel	1569	5	NA	NA	120	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	92.3102784092866	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGTGCATTCATGTC	NA	False	NA	10	True	AATAAA	-19	NA	75820368	75827217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_75820558_75822483_75822605_75823477_75823970_75825393_75825494_75826513
transcript_131357.known	chr8	+	3381	17	FSM	ENSMUSG00000005410.7	ENSMUST00000164309.3	3381	17	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	234.54782794507	1901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCTGGCTGAAGTGTTTG	NA	False	NA	1	True	NA	NA	NA	75836196	75855067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
transcript_13136.known	chr10	-	1705	11	FSM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	22.702422778197	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568157	89547832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
transcript_131364.known	chr8	+	2604	17	FSM	ENSMUSG00000005410.7	ENSMUST00000212426.2	2604	17	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	269.284113147712	1436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTGCTGTGTGAATACA	NA	False	NA	32	True	AATAAA	-45	NA	75836203	75854321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
transcript_131396.known	chr8	+	2653	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	27	True	AATAAA	-40	NA	75836251	75854316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
transcript_131397.nnic	chr8	+	3532	4	NNC	ENSMUSG00000034472.14	novel	2810	3	NA	NA	-775	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	7.31816613336672	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGATGCTTACTTCC	NA	False	NA	7	True	ATTAAA	-17	NA	75939796	75950737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_75940707_75945163_75945444_75948346_75949348_75949396
transcript_131399.nnic	chr8	+	3522	4	NNC	ENSMUSG00000034472.14	novel	2810	3	NA	NA	-775	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	7.31816613336672	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGATGCTTACTTCC	NA	False	NA	7	True	ATTAAA	-17	NA	75939796	75950737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_75940707_75945163_75945444_75948346_75949362_75949420
transcript_13140.nic	chr10	-	579	5	ISM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	-24	13811	-24	-157	5prime_fragment	FALSE	canonical	3	288	junction_3	8.61321658847611	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAATTATTCGGTGAGC	NA	False	NA	NA	False	AAAAAG	-7	NA	89568181	89561643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
transcript_131400.known	chr8	-	1250	1	FSM	ENSMUSG00000110469.2	ENSMUST00000212864.2	1250	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-12	NA	76133217	76131967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_76132000_76133200
transcript_131402.known	chr8	-	3084	23	FSM	ENSMUSG00000037148.9	ENSMUST00000076316.6	3084	23	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	5.93072961101822	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTGTCCGGCCTAAT	NA	False	NA	NA	False	AATAAA	-14	NA	78244582	77976994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_77977637_77983954_77984047_77985685_77985839_78003776_78003937_78037359_78037511_78071268_78071429_78072900_78073007_78078242_78078302_78085175_78085264_78091714_78091790_78109353_78109420_78111379_78111426_78115282_78115365_78136176_78136272_78137650_78137758_78140126_78140257_78146700_78146806_78147265_78147377_78152958_78153061_78159368_78159441_78177321_78177384_78177456_78177553_78244258
transcript_131403.nnic	chr8	-	3004	22	NIC	ENSMUSG00000037148.9	novel	3084	23	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_19	7.73131571146758	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTGTCCGGCCTAAT	NA	False	NA	NA	False	AATAAA	-14	NA	78244574	77976994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_77977637_77983954_77984047_77985685_77985839_78003776_78003937_78037359_78037511_78071268_78071429_78072900_78073007_78078242_78078302_78085175_78085264_78091714_78091790_78109353_78109420_78111379_78111426_78115282_78115365_78136176_78136272_78137650_78137758_78140126_78140257_78146700_78146806_78147265_78147377_78152958_78153061_78177321_78177384_78177456_78177553_78244258
transcript_131404.known	chr8	-	2295	22	FSM	ENSMUSG00000037148.9	ENSMUST00000210519.2	2295	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	7.5523869573026	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCGGCCGTGGGGGGTCC	NA	False	NA	NA	False	NA	NA	NA	78244412	77977547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_77977637_77983954_77984047_77985685_77985839_78003776_78003937_78037359_78037511_78071268_78071429_78072900_78073007_78078242_78078302_78085175_78085264_78091714_78091790_78111379_78111426_78115282_78115365_78136176_78136272_78137650_78137758_78140126_78140257_78146700_78146806_78147265_78147377_78152958_78153061_78159368_78159441_78177321_78177384_78177456_78177553_78244258
transcript_131407.known	chr8	-	2208	22	FSM	ENSMUSG00000037148.9	ENSMUST00000210922.2	2208	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8.01868566087306	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCGGCCGTGGGGGGTCC	NA	False	NA	NA	False	NA	NA	NA	78244412	77977547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_77977637_77983954_77984047_78003776_78003937_78037359_78037511_78071268_78071429_78072900_78073007_78078242_78078302_78085175_78085264_78091714_78091790_78109353_78109420_78111379_78111426_78115282_78115365_78136176_78136272_78137650_78137758_78140126_78140257_78146700_78146806_78147265_78147377_78152958_78153061_78159368_78159441_78177321_78177384_78177456_78177553_78244258
transcript_13141.nic	chr10	-	438	4	ISM	ENSMUSG00000019948.5	ENSMUST00000218965.2	618	7	-23	736	-1	-157	5prime_fragment	FALSE	canonical	3	25	junction_3	131.788551180375	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAATTATTCGGTGAGC	NA	False	NA	NA	False	AAAAAG	-7	NA	89568158	89561643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_89561766_89562498_89562623_89564015_89564085_89568035
transcript_131419.known	chr8	+	2781	12	FSM	ENSMUSG00000037134.18	ENSMUST00000056237.15	2781	12	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	20.627751506924	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTGTATGTAACATTAT	NA	False	NA	13	True	AATAAA	-18	NA	78276025	78307967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289042_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
transcript_131422.known	chr8	+	2688	12	FSM	ENSMUSG00000037134.18	ENSMUST00000210040.2	2688	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	44.8630606944737	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGTGTATGTAACATTA	NA	False	NA	12	True	AATAAA	-17	NA	78276082	78307966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289077_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
transcript_131426.known	chr8	-	2678	10	FSM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	10.9927024053615	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTTACGTGTCTTCT	NA	False	NA	-4	True	TTTAAA	-6	NA	78337282	78322610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731
transcript_131428.known	chr8	-	3625	8	FSM	ENSMUSG00000031616.8	ENSMUST00000034029.8	3625	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.1780301787479	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTCTGTGGTTGTCTC	NA	False	NA	NA	False	TATAAA	-31	NA	78451065	78389659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_78391746_78393951_78394061_78394427_78394562_78398145_78398299_78401541_78401741_78415697_78415826_78446656_78447132_78450724
transcript_131429.known	chr8	+	673	3	FSM	ENSMUSG00000037101.17	ENSMUST00000124713.2	673	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGTTGTAAAAAGAAGATT	NA	False	NA	NA	False	NA	NA	NA	79117610	79120403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_79118107_79119699_79119767_79120293
transcript_13143.known	chr10	-	594	6	FSM	ENSMUSG00000019948.5	ENSMUST00000220388.2	594	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	125.158459562268	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAAGAGATCATATCCTA	NA	False	NA	NA	False	GATAAA	-29	NA	89568135	89561486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_89561521_89561629_89561766_89562498_89562623_89564002_89564085_89564761_89564880_89568035
transcript_131430.known	chr8	-	377	1	FSM	ENSMUSG00000110057.2	ENSMUST00000209570.2	377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	72	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGTTCAATCAGCTGTAC	NA	False	NA	NA	False	NA	NA	NA	79213039	79212662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_79212700_79213000
transcript_131431.known	chr8	-	1695	2	FSM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTCTTGATTTCTCC	NA	False	NA	NA	False	AGTAAA	-18	NA	79235527	79231897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_79233493_79235427
transcript_131432.known	chr8	-	1622	2	FSM	ENSMUSG00000037070.11	ENSMUST00000211719.2	1622	2	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	0	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCAATTTTCTGTCTTG	NA	False	NA	NA	False	AGTAAA	-10	NA	79235508	79231905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_79233447_79235427
transcript_131439.known	chr8	+	2752	13	FSM	ENSMUSG00000031684.12	ENSMUST00000211286.2	2752	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_12	35.903806669117	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAAATCAAAATT	NA	False	NA	NA	False	NA	NA	NA	79236078	79460208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237_79458779_79459115
transcript_131442.nnic	chr8	+	3403	12	NNC	ENSMUSG00000031684.12	novel	680	4	NA	NA	-377	0	intron_retention	FALSE	canonical	0	0	junction_1	38.6674741057521	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTCTGGAAATGTCGTG	9665	False	NA	31	True	ATTAAA	-16	NA	79235597	79460631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_79235714_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
transcript_131447.known	chr8	+	3595	12	FSM	ENSMUSG00000031684.12	ENSMUST00000034111.10	3595	12	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	15.4524062690615	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGGAAATGTCGTGG	NA	False	NA	32	True	ATTAAA	-17	NA	79235996	79460632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
transcript_13146.nic	chr10	+	5104	22	NIC	ENSMUSG00000019951.11	novel	6448	21	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	36.4327728669602	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGATAC	NA	False	NA	NA	False	NA	NA	NA	89580861	89654264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_89581151_89591282_89591417_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
transcript_131462.known	chr8	+	3494	11	FSM	ENSMUSG00000031684.12	ENSMUST00000210630.2	3494	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.9035988052519	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTCTGGAAATGTCGTG	NA	False	NA	31	True	ATTAAA	-16	NA	79236020	79460631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
transcript_131464.known	chr8	+	3485	10	FSM	ENSMUSG00000031684.12	ENSMUST00000209490.2	3485	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	40.5392661350132	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGGAAATGTCGTGG	NA	False	NA	32	True	ATTAAA	-17	NA	79235980	79460632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79456246_79456393_79458237
transcript_131471.known	chr8	-	3792	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	0	0	0	0	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATCTTTCCCATCTATG	NA	False	NA	NA	False	GATAAA	-24	NA	79547769	79531493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
transcript_131474.known	chr8	-	2107	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACAGTTGCCACCATCT	NA	False	NA	NA	False	AGTAAA	-27	NA	79547769	79533079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
transcript_131479.known	chr8	-	1685	8	FSM	ENSMUSG00000037022.4	ENSMUST00000210231.2	1685	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	28.5742855714429	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021309	79994536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007809_80008284_80010837_80011076_80021174
transcript_131481.known	chr8	-	5650	7	FSM	ENSMUSG00000037022.4	ENSMUST00000048718.4	5650	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	17.5214154679352	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGTATCTTGTTCTGTA	NA	False	NA	NA	False	AATAAA	-17	NA	80021566	79990226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805_80008284_80021542
transcript_131483.nnic	chr8	-	767	5	NIC	ENSMUSG00000037022.4	novel	5650	7	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	28.7782469931718	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021594	79994536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80021542
transcript_131487.known	chr8	-	3099	7	FSM	ENSMUSG00000031681.17	ENSMUST00000066091.14	3099	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	13.1835335003767	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCATTTTTTTTCTTTG	NA	False	NA	15	True	AATAAA	-33	NA	80126147	80065023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_80066422_80070282_80070540_80076219_80076442_80079958_80080076_80082840_80083099_80098412_80098994_80125881
transcript_13149.known	chr10	+	6448	21	FSM	ENSMUSG00000019951.11	ENSMUST00000020112.7	6448	21	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_11	11.4144645078076	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTTTGTCCGATTGGTT	NA	False	NA	21	True	TATAAA	-32	NA	89580852	89655733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_89581151_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
transcript_131498.known	chr8	+	7354	21	FSM	ENSMUSG00000036990.14	ENSMUST00000173078.8	7354	21	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_10	41.3350940485201	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATGAATCTTAGTAAACT	NA	False	NA	-23	True	AATATA	-16	NA	80366246	80404353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_80366694_80370382_80370467_80372926_80372978_80377634_80377682_80378300_80378374_80379991_80380074_80382288_80382422_80385537_80385593_80385812_80385931_80386026_80386092_80387666_80387765_80390353_80390455_80390550_80390741_80391609_80391773_80393344_80393469_80394229_80394286_80395065_80395141_80395902_80396042_80396552_80396808_80397674_80397716_80399396
transcript_131502.known	chr8	+	7213	21	FSM	ENSMUSG00000036990.14	ENSMUST00000173286.8	7213	21	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_10	41.3350940485201	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGGATTCTTTGGTCT	NA	False	NA	17	True	ATTAAA	-17	NA	80366332	80404301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_80366694_80370382_80370467_80372926_80372978_80377634_80377682_80378300_80378374_80379991_80380074_80382288_80382422_80385537_80385593_80385812_80385931_80386026_80386092_80387669_80387765_80390353_80390455_80390550_80390741_80391609_80391773_80393344_80393469_80394229_80394286_80395065_80395141_80395902_80396042_80396552_80396808_80397674_80397716_80399396
transcript_131506.nic	chr8	+	1580	12	ISM	ENSMUSG00000036990.14	ENSMUST00000173078.8	7354	21	-254	13927	-254	2554	5prime_fragment	FALSE	canonical	3	98	junction_10	44.8195647951846	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAATTCTGGGCAAAATTT	NA	False	NA	NA	False	NA	NA	NA	80365992	80390426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_80366694_80370382_80370467_80372926_80372978_80377634_80377682_80378300_80378374_80379991_80380074_80382288_80382422_80385537_80385593_80385812_80385931_80386026_80386092_80387666_80387765_80390353
transcript_131517.known	chr8	-	3793	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	0	0	0	0	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	899	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTTTTTGACTTCTTT	NA	False	NA	NA	False	AATACA	-13	NA	80438369	80410090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
transcript_131541.nnic	chr8	+	850	5	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	-76	-1	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	137.767920794356	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACATGAATTTGAAGTCAA	NA	False	NA	1	True	AATAAA	-19	NA	80438372	80501970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80455758_80455880_80501560
transcript_131542.nnic	chr8	+	917	5	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	-76	66	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	137.767920794356	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAGATATATATACTAT	NA	False	NA	17	True	ATTAAA	-23	NA	80438372	80502037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80455758_80455880_80501560
transcript_131543.known	chr8	+	2801	5	FSM	ENSMUSG00000036977.9	ENSMUST00000048147.9	2801	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	177.95698216142	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGTGGATTTATGAC	NA	False	NA	NA	False	NA	NA	NA	80438448	80503949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_80438474_80439733_80439909_80446286_80446378_80455758_80455880_80501560
transcript_131545.known	chr8	+	4591	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	166.717388115337	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80438479	80505688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
transcript_131547.nnic	chr8	+	925	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	-4	-1	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACATGAATTTGAAGTCAA	NA	False	NA	1	True	AATAAA	-19	NA	80438475	80501970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
transcript_131548.nnic	chr8	+	992	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	-4	66	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAGATATATATACTAT	NA	False	NA	17	True	ATTAAA	-23	NA	80438475	80502037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
transcript_131551.known	chr8	-	9074	13	FSM	ENSMUSG00000064325.5	ENSMUST00000079038.4	9074	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	3.65433532488012	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTCTTGTGCCCTTTTA	4306	False	NA	-2	True	ATTAAA	-17	NA	80784635	80692481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_80699156_80701623_80701773_80713564_80713647_80715876_80716008_80716874_80716999_80719102_80719225_80723351_80723496_80724083_80724258_80724787_80724940_80770574_80770777_80771679_80771837_80778056_80778250_80783865
transcript_131555.known	chr8	-	6113	24	FSM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	0	0	0	0	multi-exon	FALSE	canonical	3	1231	junction_15	129.150386396008	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGGGTAAGTCTGAATA	NA	False	NA	NA	False	AATAAA	-15	NA	81466126	81425135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_81427758_81428756_81428865_81431233_81431447_81431847_81431967_81432075_81432209_81435311_81435435_81435741_81435856_81436284_81436396_81437185_81437306_81438285_81438435_81440562_81440696_81443077_81443231_81444150_81444273_81446206_81446434_81447316_81447427_81450797_81450867_81452618_81452751_81452839_81452996_81454244_81454425_81455101_81455203_81456723_81456825_81460318_81460486_81463317_81463393_81465551
transcript_131559.nic	chr8	-	3540	23	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	-89	3661	-89	3317	5prime_fragment	FALSE	canonical	3	1231	junction_14	132.011331845176	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAGAAGGCAGAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81466215	81428796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_81428865_81431233_81431447_81431847_81431967_81432075_81432209_81435311_81435435_81435741_81435856_81436284_81436396_81437185_81437306_81438285_81438435_81440562_81440696_81443077_81443231_81444150_81444273_81446206_81446434_81447316_81447427_81450797_81450867_81452618_81452751_81452839_81452996_81454244_81454425_81455101_81455203_81456723_81456825_81460318_81460486_81463317_81463393_81465551
transcript_131569.nic	chr8	-	2688	17	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	-89	11231	-89	0	5prime_fragment	FALSE	canonical	3	1231	junction_8	118.568018453544	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAGAAAGAAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	81466215	81436366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_81436396_81437185_81437306_81438285_81438435_81440562_81440696_81443077_81443231_81444150_81444273_81446206_81446434_81447316_81447427_81450797_81450867_81452618_81452751_81452839_81452996_81454244_81454425_81455101_81455203_81456723_81456825_81460318_81460486_81463317_81463393_81465551
transcript_131572.nic	chr8	-	2601	16	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	-32	12051	-32	-820	5prime_fragment	FALSE	canonical	3	1231	junction_7	122.433002086856	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACTTATTTTAGAATGAA	NA	False	NA	NA	False	AAAACA	-4	NA	81466158	81437186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_81437306_81438285_81438435_81440562_81440696_81443077_81443231_81444150_81444273_81446206_81446434_81447316_81447427_81450797_81450867_81452618_81452751_81452839_81452996_81454244_81454425_81455101_81455203_81456723_81456825_81460318_81460486_81463317_81463393_81465551
transcript_131573.nic	chr8	-	2539	15	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	-89	13150	-89	-1919	5prime_fragment	FALSE	canonical	3	1231	junction_6	112.139968115653	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGATGCATAGTAAATGA	NA	False	NA	NA	False	NA	NA	NA	81466215	81438285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_81438435_81440562_81440696_81443077_81443231_81444150_81444273_81446206_81446434_81447316_81447427_81450797_81450867_81452618_81452751_81452839_81452996_81454244_81454425_81455101_81455203_81456723_81456825_81460318_81460486_81463317_81463393_81465551
transcript_131583.nic	chr8	-	1438	7	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	-89	27710	-89	-635	5prime_fragment	FALSE	canonical	3	1273	junction_6	99.4491774168539	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAGGTAATTTGATACTT	NA	False	NA	NA	False	GATAAA	-11	NA	81466215	81452845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_81452996_81454244_81454425_81455101_81455203_81456723_81456825_81460318_81460486_81463317_81463393_81465551
transcript_131586.nic	chr8	-	737	2	ISM	ENSMUSG00000031715.15	ENSMUST00000122807.8	3292	20	-161	31206	-89	-11109	5prime_fragment	FALSE	canonical	3	1273	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGTTCTAGACATGTG	NA	False	NA	NA	False	AAAAAG	-37	NA	81466215	81463319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_81463393_81465551
transcript_131589.nnic	chr8	-	4075	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21222	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	171.228765106801	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	-9	True	AATAAA	-15	NA	81585903	81491068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81502789_81502880_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
transcript_131590.known	chr8	-	4985	11	FSM	ENSMUSG00000031714.10	ENSMUST00000210676.2	4985	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	194.66638127833	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGAGCTGTGTTACTTT	NA	False	NA	-7	True	AATAAA	-17	NA	81607148	81491066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81502789_81502880_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81606160
transcript_131597.nnic	chr8	-	3985	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21222	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	-9	True	AATAAA	-15	NA	81585903	81491068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
transcript_131598.known	chr8	-	4870	10	FSM	ENSMUSG00000031714.10	ENSMUST00000034150.10	4870	10	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_9	135.607913385759	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	-9	True	AATAAA	-15	NA	81607125	81491068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81606160
transcript_131602.known	chr8	-	4707	10	FSM	ENSMUSG00000038250.10	ENSMUST00000042724.8	4707	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	8.95392871906924	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCTACTGTCCTGTTTT	NA	False	NA	-9	True	ATTAAA	-14	NA	81741557	81707361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_81708610_81711066_81712430_81714115_81714223_81716635_81716730_81719824_81720019_81722310_81722470_81727681_81727784_81731960_81732091_81738795_81738932_81740383
transcript_131614.known	chr8	-	1675	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500789	83490249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
transcript_131616.nic	chr8	-	787	9	ISM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	-50	1301	-50	-412	5prime_fragment	FALSE	canonical	3	422	junction_2	45.6753147225063	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACAACCTCCTTGCCC	NA	False	NA	NA	False	AAGAAA	-3	NA	83500839	83491550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
transcript_131617.known	chr8	-	761	8	FSM	ENSMUSG00000031711.8	ENSMUST00000211462.2	761	8	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_6	164.077259054311	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGATACTGGATACCATG	NA	False	NA	-47	True	NA	NA	NA	83500743	83491026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83499508_83499641_83500685
transcript_131619.nic	chr8	-	781	7	ISM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	-50	2956	-50	-2067	5prime_fragment	FALSE	canonical	3	426	junction_4	44.8094732047688	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTTAGTGTGTTGTATGA	NA	False	NA	NA	False	AATAAA	-16	NA	83500839	83493205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
transcript_131620.known	chr8	+	5334	21	FSM	ENSMUSG00000031709.16	ENSMUST00000093393.5	5334	21	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_8	3.27528624703246	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGATGTCCTTGTACTTG	NA	False	NA	3	True	AATAAA	-15	NA	83892488	83999563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_83892834_83937049_83937161_83948066_83948186_83960108_83960338_83960740_83961003_83963140_83963349_83966459_83966667_83968166_83968338_83969150_83969302_83976030_83976246_83980086_83980205_83981255_83981542_83982423_83982554_83985623_83985723_83985932_83986002_83987547_83987789_83991475_83991542_83992709_83992797_83995611_83995687_83995772_83995877_83997522
transcript_131623.known	chr8	+	4631	18	FSM	ENSMUSG00000031709.16	ENSMUST00000034145.11	4631	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	4.46516699161138	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAATAATAAAATTAAA	NA	False	NA	NA	False	AATACA	-3	NA	83891980	83999051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_83892834_83937049_83937161_83948066_83948186_83966459_83966667_83968166_83968338_83969150_83969302_83976030_83976246_83980086_83980205_83981255_83981542_83982423_83982554_83985623_83985723_83985932_83986002_83987547_83987789_83991475_83991542_83992709_83992797_83995611_83995687_83995772_83995877_83997522
transcript_131624.known	chr8	-	4319	9	FSM	ENSMUSG00000035151.13	ENSMUST00000053902.4	4319	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_4	7.29297607290741	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCTGTGGATGCTTGA	8170	False	NA	3	True	AATAAA	-23	NA	84059115	84039650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84043091_84043429_84043564_84044359_84044429_84046042_84046177_84048061_84048192_84049295_84049394_84055740_84055770_84057739_84057888_84058978
transcript_131627.known	chr8	+	3902	15	FSM	ENSMUSG00000002190.14	ENSMUST00000002259.13	3902	15	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_1	9.63756468519016	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTGTGTCTTGCTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	84116495	84155181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84116607_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
transcript_131629.known	chr8	+	2293	15	FSM	ENSMUSG00000002190.14	ENSMUST00000109831.3	2293	15	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	6.81834260787527	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAGAGCCAAGAGATTCG	NA	False	NA	12	True	AATAAA	-18	NA	84116506	84153460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84116730_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
transcript_13163.known	chr10	+	1924	7	FSM	ENSMUSG00000019951.11	ENSMUST00000219712.2	1924	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	55.9982638619766	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTTGTTTATCATTTATC	NA	False	NA	NA	False	AATAAA	-17	NA	89580978	89618122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_89581151_89591282_89591417_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988
transcript_131633.known	chr8	-	409	4	FSM	ENSMUSG00000063253.12	ENSMUST00000212031.2	409	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	12.1928941054479	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGCTTTTTTTCTTCC	7419	False	NA	NA	False	AGTAAA	-26	NA	84169134	84162500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84169050
transcript_131638.known	chr8	+	623	3	FSM	ENSMUSG00000033938.6	ENSMUST00000036996.6	623	3	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_2	87.5	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTGTGCTACTTCAA	NA	False	NA	23	True	AATAAA	-23	NA	84293299	84298255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84293560_84297458_84297628_84298061
transcript_131639.known	chr8	+	4435	2	FSM	ENSMUSG00000033938.6	ENSMUST00000127162.2	4435	2	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTGTGCTACTTCAA	NA	False	NA	23	True	AATAAA	-23	NA	84293386	84298255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84297628_84298061
transcript_131640.known	chr8	-	1158	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	0	0	0	0	multi-exon	FALSE	canonical	3	3555	junction_3	302.48290814891	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321106	84298328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
transcript_131642.known	chr8	-	1120	12	FSM	ENSMUSG00000031708.18	ENSMUST00000165740.9	1120	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_9	1051.54616581631	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321113	84298328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
transcript_131645.nnic	chr8	-	1091	11	NIC	ENSMUSG00000031708.18	novel	1120	12	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_9	1190.40285617937	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	-3	True	AATAAA	-15	NA	84321134	84298326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84301106_84301158_84320968
transcript_131662.known	chr8	+	2996	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_2	45.5	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATACGAGGTGCTCGGCT	NA	False	NA	NA	False	AATAAA	-23	NA	84334821	84339282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84335172_84336442_84337024_84337217
transcript_131666.known	chr8	+	1522	7	FSM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	0	0	0	0	multi-exon	FALSE	canonical	3	964	junction_1	101.245027312731	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAACTCATTCTGTAGAC	NA	False	NA	16	True	NA	NA	NA	84379305	84391323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84379367_84387587_84387910_84388583_84388770_84388863_84389045_84389677_84389791_84390548_84390631_84390746
transcript_131668.nic	chr8	+	1728	6	NIC	ENSMUSG00000019433.10	novel	1522	7	NA	NA	-17	95	intron_retention	FALSE	canonical	3	964	junction_1	105.526489565417	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTGCTCTCCCTGCTTT	NA	False	NA	21	True	NA	NA	NA	84379288	84391418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_84379367_84387587_84387910_84388583_84389045_84389677_84389791_84390548_84390631_84390746
transcript_13168.known	chr10	-	6433	27	FSM	ENSMUSG00000019979.13	ENSMUST00000159110.8	6433	27	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_15	13.5705476423617	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTTTCGGGATCCTTT	NA	False	NA	NA	False	AATAAA	-25	NA	90918524	90825172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90827459_90831509_90831657_90833073_90833200_90835513_90835640_90836871_90836992_90844985_90845112_90849921_90850039_90854827_90854948_90856517_90856644_90859581_90859711_90867410_90867573_90872771_90872898_90875646_90875779_90883947_90884074_90885219_90885347_90890241_90890427_90891776_90891891_90894172_90894305_90895434_90895603_90895909_90896149_90897559_90897692_90897965_90898079_90902942_90903127_90913395_90913594_90915308_90915499_90915748_90915951_90918044
transcript_131686.known	chr8	-	6662	22	FSM	ENSMUSG00000057672.17	ENSMUST00000005616.16	6662	22	0	0	0	0	multi-exon	TRUE	canonical	3	231	junction_13	29.0604187256126	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACTGGAAAATGTGAGC	NA	False	NA	-9	True	AATAAA	-14	NA	84425808	84393164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84425595
transcript_13169.known	chr10	-	6577	27	FSM	ENSMUSG00000019979.13	ENSMUST00000020157.13	6577	27	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_26	18.4606169641815	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATTTTGGTTTCGGG	NA	False	NA	NA	False	AATAAA	-18	NA	90918632	90825179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90827459_90831509_90831657_90833073_90833200_90835513_90835640_90836871_90836992_90844985_90845112_90849921_90850039_90854827_90854948_90856517_90856644_90859581_90859711_90867410_90867573_90872771_90872898_90875646_90875779_90883947_90884074_90885219_90885347_90890241_90890427_90891776_90891891_90894172_90894305_90895434_90895603_90895909_90896149_90897559_90897692_90897965_90898079_90902942_90903127_90913395_90913594_90915308_90915499_90915748_90915994_90918044
transcript_131698.nic	chr8	-	3044	21	ISM	ENSMUSG00000057672.17	ENSMUST00000005616.16	6662	22	-63	4051	-63	0	5prime_fragment	FALSE	canonical	3	231	junction_12	28.1539961639551	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCGTTTGTCTGCAACCT	NA	False	NA	-15	True	NA	NA	NA	84425871	84397215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84425595
transcript_131709.known	chr8	-	1783	3	FSM	ENSMUSG00000057672.17	ENSMUST00000135356.2	1783	3	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAAAGAGAGAAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	84425796	84416548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84417830_84419264_84419566_84425595
transcript_131710.known	chr8	-	2995	22	FSM	ENSMUSG00000057672.17	ENSMUST00000144258.8	2995	22	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_21	57.6705790816251	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCAGCCTCTGTGTGCA	NA	False	NA	-18	True	TTTAAA	-33	NA	84420689	84396719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84420588
transcript_131717.known	chr8	+	1551	12	FSM	ENSMUSG00000005481.19	ENSMUST00000140521.8	1551	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	911.296107223839	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	26	True	AATAAA	-12	NA	84441896	84449904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_131720.known	chr8	+	1927	11	FSM	ENSMUSG00000005481.19	ENSMUST00000127505.8	1927	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	947.235852362019	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCATGGCTCCAGCCCC	NA	False	NA	25	True	AATAAA	-11	NA	84441896	84449903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_131721.known	chr8	+	1656	11	FSM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_5	95.6715736256073	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84441805	84449977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_131724.known	chr8	+	1794	11	FSM	ENSMUSG00000005481.19	ENSMUST00000109810.2	1794	11	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	682.0140834323	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84442176	84449977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84442476_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_131732.known	chr8	-	3000	20	FSM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_16	54.4176930653952	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACGTTTGCTGGTGAGA	NA	False	NA	-9	True	ATTAAA	-21	NA	84467798	84449990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
transcript_131733.known	chr8	-	2867	19	FSM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_15	26.9886235749276	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCACGTTTGCTGGTGA	NA	False	NA	-11	True	ATTAAA	-19	NA	84467802	84449992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
transcript_131734.known	chr8	+	5643	24	FSM	ENSMUSG00000013033.17	ENSMUST00000045393.15	5643	24	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	19.7858095833748	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATCACTTGAAGCCACC	3682	False	NA	NA	False	NA	NA	NA	84627343	84666640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84627554_84642035_84642198_84645448_84645663_84649627_84649738_84652890_84652906_84656092_84656894_84657590_84657906_84658241_84658346_84658596_84658783_84659000_84659040_84659136_84659321_84659468_84659592_84660054_84660270_84660505_84660677_84661055_84661266_84661346_84661568_84661692_84661760_84662170_84662263_84662648_84662818_84663825_84663955_84664089_84664187_84664277_84664407_84664544_84664563_84664978
transcript_131736.known	chr8	-	2798	5	FSM	ENSMUSG00000074219.4	ENSMUST00000098595.3	2798	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.12132034355964	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCTCCTCTAGCCTTA	6070	False	NA	NA	False	AATAAA	-15	NA	84681834	84658957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84661236_84661487_84661700_84662360_84662458_84662696_84662805_84681731
transcript_131739.known	chr8	-	609	4	FSM	ENSMUSG00000074219.4	ENSMUST00000238531.2	609	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.4142135623731	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTGCAAGCCCCGCAGG	5932	False	NA	NA	False	NA	NA	NA	84681972	84661176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84661236_84661487_84661700_84662360_84662458_84681731
transcript_131741.known	chr8	+	1788	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	3.39934634239519	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTCTCTC	5716	False	NA	23	True	AATAAA	-16	NA	84682135	84696826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
transcript_131748.known	chr8	+	2276	10	FSM	ENSMUSG00000005469.11	ENSMUST00000005606.8	2276	10	0	0	0	0	multi-exon	FALSE	canonical	3	651	junction_8	27.9342260972865	2054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCGCTGGTTTTCCCGA	452	False	NA	NA	False	AATAAA	-19	NA	84699621	84723072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84699862_84707402_84707465_84707800_84707930_84713465_84713565_84714911_84714995_84717056_84717184_84717270_84717367_84717491_84717615_84721423_84721589_84721920
transcript_131750.known	chr8	+	1399	10	FSM	ENSMUSG00000005469.11	ENSMUST00000211558.2	1399	10	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	224.880269927064	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGAAGGGGCAACATCA	108	False	NA	NA	False	NA	NA	NA	84703511	84722223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84703724_84707402_84707465_84707800_84707930_84713465_84713565_84714911_84714995_84717056_84717184_84717270_84717367_84717491_84717615_84721423_84721589_84721920
transcript_131758.known	chr8	+	1291	6	FSM	ENSMUSG00000046408.16	ENSMUST00000060357.15	1291	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	1.32664991614216	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGTCTTGTGAGCAC	5069	False	NA	NA	False	AATAAA	-16	NA	84728130	84731399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84728535_84729486_84729632_84729744_84729846_84729924_84730111_84730553_84730689_84731079
transcript_131759.nnic	chr8	-	1175	4	NNC	ENSMUSG00000074217.9	novel	1351	3	NA	NA	-204	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	73.9113583212275	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTGCAAGCTATTTTC	7316	False	NA	-9	True	AATAAA	-22	NA	84739004	84736850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_84737122_84737339_84737402_84737769_84738350_84738742
transcript_131760.nic	chr8	-	1005	4	NIC	ENSMUSG00000074217.9	novel	1351	3	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	68.8250600354906	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTGCAAGCTATTTTC	7514	False	NA	-9	True	AATAAA	-22	NA	84738806	84736850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_84737122_84737339_84737402_84737769_84738378_84738742
transcript_131761.nic	chr8	-	1586	4	NIC	ENSMUSG00000074217.9	novel	1351	3	NA	NA	-565	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	63.754738385995	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTGCAAGCTATTTTC	6955	False	NA	-9	True	AATAAA	-22	NA	84739365	84736850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_84737122_84737339_84737402_84737769_84738400_84738742
transcript_131762.known	chr8	-	1351	3	FSM	ENSMUSG00000074217.9	ENSMUST00000190457.2	1351	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	17	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTGCAAGCTATTTTC	7533	False	NA	-9	True	AATAAA	-22	NA	84738787	84736850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84737122_84737339_84737402_84737769
transcript_131766.known	chr8	-	2664	14	FSM	ENSMUSG00000005465.10	ENSMUST00000005601.9	2664	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	6.10848667572056	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCAGAGTGCCTTAAC	5259	False	NA	NA	False	NA	NA	NA	84769218	84756922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84757822_84757941_84758051_84758147_84758239_84758645_84758772_84760579_84760739_84760820_84760923_84762713_84762903_84762991_84763176_84765924_84765999_84766106_84766264_84767302_84767461_84767560_84767719_84768715_84768834_84769078
transcript_131768.known	chr8	+	2452	7	FSM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	39.9110121255887	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTATTTATT	NA	False	NA	11	True	ATTAAA	-24	NA	84748099	84756924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84748158_84750980_84751030_84752822_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
transcript_13177.known	chr10	-	2710	5	FSM	ENSMUSG00000019979.13	ENSMUST00000161987.8	2710	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	12.1449578014911	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGATTAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	90918291	90901253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90903127_90913395_90913594_90915308_90915499_90915748_90915951_90918044
transcript_131773.nic	chr8	+	3567	5	ISM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	3501	0	-1103	0	3prime_fragment	FALSE	canonical	3	94	junction_2	4.49305018890286	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTATTTATT	NA	False	NA	11	True	ATTAAA	-24	NA	84751600	84756924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
transcript_131779.known	chr8	-	634	2	FSM	ENSMUSG00000045232.5	ENSMUST00000061923.5	634	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGCCCCTCCTCTATCCA	2848	False	NA	NA	False	NA	NA	NA	84771629	84769557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84769961_84771398
transcript_13178.known	chr10	+	3232	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020149.6	3232	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	27	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAGAGAGTACTGTCCAT	755	False	NA	13	True	AATAAA	-19	NA	90918918	90934519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_90919159_90929000_90929119_90931645
transcript_131781.known	chr8	+	4172	21	FSM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	9.14002188181188	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTACTGATGACGAGAGCA	NA	False	NA	21	True	AATAAA	-17	NA	84793464	84823621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84793678_84800359_84800699_84806491_84806602_84806753_84806838_84807743_84807852_84809276_84809391_84810710_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
transcript_131786.nnic	chr8	+	3846	20	NIC	ENSMUSG00000031706.8	novel	4172	21	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	1	8	junction_1	11.873058960768	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTACTGATGACGAGAGCA	NA	False	NA	21	True	AATAAA	-17	NA	84793451	84823621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_84793678_84806491_84806602_84806753_84806838_84807743_84807852_84809276_84809391_84810710_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
transcript_131788.known	chr8	-	2312	13	FSM	ENSMUSG00000037103.9	ENSMUST00000041367.9	2312	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	56.6688112339289	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	9263	False	NA	-3	True	ACTAAA	-17	NA	84831391	84823700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84824138_84824251_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
transcript_131791.known	chr8	-	2199	13	FSM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	21.0218140669797	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	9262	False	NA	-3	True	ACTAAA	-17	NA	84831392	84823700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
transcript_131814.known	chr8	-	3471	29	FSM	ENSMUSG00000036686.17	ENSMUST00000040383.9	3471	29	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_17	12.7601500215095	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTTTTTGTCCTTG	NA	False	NA	-1	True	AATGAA	-24	NA	84874565	84859456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84859887_84859960_84860009_84860092_84860170_84860392_84860520_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865459_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870236_84870372_84870586_84870653_84870737_84870851_84872942_84873079_84874275
transcript_13183.known	chr10	+	1328	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020150.10	1328	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	32.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATTTTGCTCCATAAT	638	False	NA	12	True	AATAAA	-17	NA	90918801	90938469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_90919159_90929000_90929119_90937616
transcript_131849.known	chr8	+	2366	9	FSM	ENSMUSG00000008129.15	ENSMUST00000118856.8	2366	9	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_1	4.49826355386165	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGATCTGTAGCTGTG	2017	False	NA	5	True	AATAAA	-15	NA	84874787	84899219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84888928_84889034_84893209_84894320_84896983_84897082_84898446_84898540_84898789
transcript_131850.known	chr8	+	2167	8	FSM	ENSMUSG00000008129.15	ENSMUST00000093375.5	2167	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	5.92125193601792	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCTGATCTGTAGCTGT	2110	False	NA	4	True	AATAAA	-14	NA	84874880	84899218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84893209_84894320_84896983_84897082_84898446_84898540_84898789
transcript_131851.nnic	chr8	+	2455	8	NIC	ENSMUSG00000008129.15	novel	2366	9	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	5.99659767480439	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCTGATCTGTAGCTGT	1879	False	NA	4	True	AATAAA	-14	NA	84874649	84899218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_84875028_84886073_84886237_84887841_84887921_84888928_84889034_84893209_84894320_84896983_84897082_84898446_84898540_84898789
transcript_131852.nnic	chr8	+	2350	7	NIC	ENSMUSG00000008129.15	novel	2167	8	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	7.34279692397023	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCTGATCTGTAGCTGT	1879	False	NA	4	True	AATAAA	-14	NA	84874649	84899218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_84875028_84886073_84886237_84887841_84887921_84893209_84894320_84896983_84897082_84898446_84898540_84898789
transcript_131854.known	chr8	-	4625	14	FSM	ENSMUSG00000035671.7	ENSMUST00000039480.7	4625	14	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_10	5.27694550342846	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGATTGCACTGTCCTT	6086	False	NA	NA	False	NA	NA	NA	84963684	84937306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84939435_84940651_84940734_84943873_84944038_84946454_84946610_84949848_84949985_84950299_84950555_84950771_84950910_84952444_84952796_84953300_84953469_84955420_84955572_84955651_84955801_84957369_84957727_84961531_84961734_84963495
transcript_131860.nic	chr8	-	2533	5	ISM	ENSMUSG00000035671.7	ENSMUST00000039480.7	4625	14	13551	281	13551	-281	3prime_fragment	FALSE	canonical	3	31	junction_1	1.22474487139159	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTTTTAACTTCAAGAC	NA	False	NA	-15	True	AAAAAG	-12	NA	84950133	84937587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_84939435_84940651_84940734_84943873_84944038_84946454_84946610_84949848
transcript_131865.known	chr8	-	616	3	FSM	ENSMUSG00000019362.9	ENSMUST00000019506.9	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	1764	junction_2	46	438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84973323_84976102_84976159_84976244
transcript_131872.known	chr8	-	2819	5	FSM	ENSMUSG00000004996.10	ENSMUST00000126435.8	2819	5	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	18.1159460144923	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTTTACAATACACAAA	6966	False	NA	NA	False	NA	NA	NA	84983953	84976534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84978341_84980491_84980717_84980804_84980982_84982872_84983049_84983518
transcript_131876.known	chr8	-	804	4	FSM	ENSMUSG00000004996.10	ENSMUST00000005122.4	804	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	85.5582972143685	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGTCATAGAGGAACGCC	7043	False	NA	NA	False	NA	NA	NA	84983876	84980559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84980717_84980804_84980982_84982936_84983049_84983518
transcript_131877.nic	chr8	-	1470	3	NIC	ENSMUSG00000004996.10	novel	2819	5	NA	NA	-31	404	intron_retention	FALSE	canonical	3	223	junction_2	7	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTATTTATTTTATAAGT	6933	False	NA	NA	False	AAAAAG	-11	NA	84983986	84980155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_84980982_84982872_84983049_84983518
transcript_131878.nic	chr8	-	1345	3	NIC	ENSMUSG00000004996.10	novel	804	4	NA	NA	28	404	intron_retention	FALSE	canonical	3	28	junction_1	97.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTATTTATTTTATAAGT	6994	False	NA	NA	False	AAAAAG	-11	NA	84983925	84980155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_84980982_84982936_84983049_84983518
transcript_131879.known	chr8	-	1065	2	FSM	ENSMUSG00000004996.10	ENSMUST00000127747.2	1065	2	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAAATAAATACTT	6964	False	NA	NA	False	NA	NA	NA	84983955	84982420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84983049_84983518
transcript_131881.known	chr8	-	2119	10	FSM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_9	31.8437543540021	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCTGGAATTAAAATCT	NA	False	NA	NA	False	NA	NA	NA	84997009	84984423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
transcript_131886.known	chr8	-	1441	9	FSM	ENSMUSG00000004994.13	ENSMUST00000005120.12	1441	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	76.6823806359714	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCCTTGTTTCTAAACT	NA	False	NA	-22	True	ATTAAA	-15	NA	84996976	84984929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_84985556_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
transcript_131905.known	chr8	-	1524	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2520	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCTTGTCTGGCTTGCTT	NA	False	NA	-1	True	AATAAA	-20	NA	85389483	85387959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85388000_85389500
transcript_131907.nic	chr8	+	2370	17	NIC	ENSMUSG00000001909.17	novel	2114	15	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	133.003230693844	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85412916	85426415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85413329_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_13191.known	chr10	-	1612	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	0	0	0	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	2673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAGTTTTATTTTTTTGA	NA	False	NA	0	True	ATTAAA	-18	NA	90959921	90952435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
transcript_131910.known	chr8	+	2138	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	116.091541869983	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415875	85426416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_131915.known	chr8	+	2044	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415892	85426415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_131920.known	chr8	+	2567	17	FSM	ENSMUSG00000001909.17	ENSMUST00000001974.11	2567	17	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	103.16006979447	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATCTGCATGGGGGAC	NA	False	NA	36	True	AATAAA	-36	NA	85415494	85426437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_131927.nic	chr8	+	2078	17	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	113.375964714749	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415885	85426415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_13193.known	chr10	-	1341	8	FSM	ENSMUSG00000061904.13	ENSMUST00000170810.8	1341	8	0	0	0	0	multi-exon	FALSE	canonical	1	85	junction_6	1787.71823557179	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTATGAGTTTGTTATT	NA	False	NA	-5	True	AATAAA	-15	NA	90959865	90952653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90958068_90958194_90959419_90959569_90959777
transcript_131954.nic	chr8	+	2392	16	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	179	junction_1	102.688395968905	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415885	85426415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85416006_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_131961.nic	chr8	+	2316	16	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	129	junction_1	113.803026712337	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415885	85426415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85416006_85416336_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_131989.known	chr8	-	4344	6	FSM	ENSMUSG00000001910.6	ENSMUST00000001975.6	4344	6	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_4	52.9172939595365	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCTGTGCTCTGCTCA	NA	False	NA	-6	True	AATAAA	-19	NA	85414531	85397107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85402969_85403882_85414303
transcript_132001.known	chr8	+	3647	15	FSM	ENSMUSG00000001909.17	ENSMUST00000137953.8	3647	15	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	120.800814296485	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATCTGCATGGGGGAC	NA	False	NA	36	True	AATAAA	-36	NA	85415911	85426437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85415979_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_132002.known	chr8	+	721	2	FSM	ENSMUSG00000074203.5	ENSMUST00000098571.5	721	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGGTGGCTCACATCT	NA	False	NA	NA	False	ATTAAA	-15	NA	85449635	85453473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85449901_85453017
transcript_132008.known	chr8	-	2074	9	FSM	ENSMUSG00000003813.16	ENSMUST00000003911.13	2074	9	0	0	0	0	multi-exon	TRUE	canonical	3	805	junction_3	189.238440862315	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCATCTGCTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	85567270	85561280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85562304_85562383_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
transcript_132009.known	chr8	-	1842	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_3	246.139156525328	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCTTCTCACAGCTGT	NA	False	NA	-14	True	AATAAA	-37	NA	85567294	85561539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
transcript_132031.known	chr8	+	2494	2	FSM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_1	0	696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATATATACTTTCTC	2674	False	NA	NA	False	NA	NA	NA	85558150	85562111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85559270_85560736
transcript_132033.known	chr8	-	1369	2	FSM	ENSMUSG00000053226.8	ENSMUST00000238279.2	1369	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGCGTGCTTCTTTCT	399	False	NA	0	True	CATAAA	-15	NA	85559038	85542033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85543163_85558798
transcript_132038.known	chr8	-	2184	9	FSM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	0	0	0	0	multi-exon	FALSE	canonical	3	1093	junction_6	113.438791314964	2045	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTAGCCATCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	85573563	85568478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
transcript_13204.known	chr10	-	1483	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCATCTATTCCTGATGT	NA	False	NA	-21	True	NA	NA	NA	90959817	90952669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
transcript_132054.nnic	chr8	+	2192	15	Fusion	ENSMUSG00000087685.2_ENSMUSG00000003808.19	novel	1826	13	NA	NA	-10	0	multi-exon	FALSE	canonical	2	5	junction_1	228.72592992577	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85573806	85595885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr8_+_85573950_85574698_85574925_85583619_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
transcript_132055.known	chr8	+	1708	13	FSM	ENSMUSG00000003808.19	ENSMUST00000156970.8	1708	13	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	180.621996322584	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583648	85595885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
transcript_132056.known	chr8	+	1795	13	FSM	ENSMUSG00000003808.19	ENSMUST00000109754.2	1795	13	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_9	182.281585435526	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85583645	85595886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594381_85594548_85594637_85594716_85594852_85594968_85595494
transcript_132057.known	chr8	+	1920	12	FSM	ENSMUSG00000003808.19	ENSMUST00000129595.8	1920	12	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	51.0548238790647	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583623	85595885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594548_85594637_85594716_85594852_85594968_85595494
transcript_132060.known	chr8	-	2114	12	FSM	ENSMUSG00000003809.15	ENSMUST00000109745.8	2114	12	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_11	27.3803935401452	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	-5	True	AATAAA	-9	NA	85620550	85613021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183_85620314_85620370
transcript_132063.known	chr8	-	2167	11	FSM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	21.1293634546808	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	-5	True	AATAAA	-9	NA	85620546	85613021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183
transcript_13207.known	chr10	-	3533	9	FSM	ENSMUSG00000019961.18	ENSMUST00000072239.14	3533	9	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_4	77.1961786619001	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTGTTGAATACATG	NA	False	NA	-2	True	AATAAA	-15	NA	91007444	90983432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90989139_90989260_90994609_90994708_90999904_91000064_91001804_91001932_91006899
transcript_132076.known	chr8	+	929	5	FSM	ENSMUSG00000003824.13	ENSMUST00000170296.2	929	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	678.634428466461	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598739	85614075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85598883_85599330_85599462_85610059_85610214_85612563_85612753_85613763
transcript_132079.known	chr8	+	685	4	FSM	ENSMUSG00000003824.13	ENSMUST00000003922.6	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_2	470.355184940062	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCCTTTGCTCTTTCCC	NA	False	NA	91	True	AAAACA	-4	NA	85598821	85614085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85598883_85599348_85599462_85612563_85612753_85613763
transcript_132081.known	chr8	-	408	4	FSM	ENSMUSG00000003809.15	ENSMUST00000142748.2	408	4	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	30.6847772609735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGGACACCTTCCGTAA	NA	False	NA	NA	False	NA	NA	NA	85620550	85619722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85619794_85620076_85620104_85620183_85620314_85620370
transcript_132083.nic	chr8	-	2809	9	ISM	ENSMUSG00000053693.17	ENSMUST00000109741.9	4872	26	18523	3	5284	0	3prime_fragment	FALSE	canonical	1	2	junction_8	3.38193731461717	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCTTGGGGTTCACACC	NA	False	NA	-2	True	AATAAA	-17	NA	85645459	85638534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_85639871_85639948_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681_85644861_85645298
transcript_132085.nic	chr8	-	2888	8	NIC	ENSMUSG00000053693.17	novel	4872	26	NA	NA	5284	1	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	3.54562104171167	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGGGTTCACACCT	NA	False	NA	-1	True	AATAAA	-18	NA	85645459	85638533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681_85644861_85645298
transcript_132091.nnic	chr8	+	1518	7	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	40	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	34.0864912962436	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCAGAGACTAGTTTTGA	NA	False	NA	5	True	NA	NA	NA	85635228	85638085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637821_85637964
transcript_132093.nic	chr8	-	2757	7	NIC	ENSMUSG00000053693.17	novel	4872	26	NA	NA	5853	1	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	2.76887462097269	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGGGTTCACACCT	NA	False	NA	-1	True	AATAAA	-18	NA	85644890	85638533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681
transcript_132096.known	chr8	+	1958	6	FSM	ENSMUSG00000003812.14	ENSMUST00000109744.8	1958	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	35.6796860972739	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGTAACCTTTTTCTTAA	NA	False	NA	9	True	AATACA	-19	NA	85635188	85638337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85635504_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314
transcript_132114.nnic	chr8	+	2543	3	NNC	ENSMUSG00000003812.14	novel	590	4	NA	NA	9	-5	intron_retention	FALSE	non_canonical	0	0	junction_2	44.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCAGAGACTAGTTTTGA	NA	False	NA	5	True	NA	NA	NA	85635284	85638085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_85635500_85635613_85637821_85637964
transcript_132115.known	chr8	+	1118	3	FSM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	1.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATATAGAGTGGGGGTG	NA	False	NA	4	True	AATAAA	-16	NA	85640019	85649544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85640158_85647022_85647134_85648675
transcript_132121.nnic	chr8	-	1653	3	NNC	ENSMUSG00000053693.17	novel	4821	14	NA	NA	9947	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	4	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCTTGGGGTTCACACC	NA	False	NA	-2	True	AATAAA	-17	NA	85640796	85638534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_85639871_85639948_85640137_85640667
transcript_132123.known	chr8	+	4073	7	FSM	ENSMUSG00000003812.14	ENSMUST00000128400.2	4073	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	11.7567947256989	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCTCTTTCATCTAG	NA	False	NA	NA	False	NA	NA	NA	85635349	85641150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85640158_85640690
transcript_132132.known	chr8	-	2981	10	FSM	ENSMUSG00000052926.17	ENSMUST00000109736.9	2981	10	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_9	446.653979919331	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTATGTTATCTATTT	4554	False	NA	-7	True	NA	NA	NA	85696369	85683238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914
transcript_132139.known	chr8	+	1500	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	0	0	0	0	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696239	85701463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_13214.known	chr10	-	1854	8	FSM	ENSMUSG00000019961.18	ENSMUST00000092219.14	1854	8	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	263.470092792177	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGATTTATGACTTATT	NA	False	NA	-7	True	ATTAAA	-18	NA	91007430	90984977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90994609_90994708_90999904_91000064_91001804_91001932_91006899
transcript_132141.known	chr8	+	1612	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	1434.62463383284	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696215	85701463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_132142.known	chr8	+	1590	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109733.8	1590	6	0	0	0	0	multi-exon	FALSE	canonical	3	752	junction_1	1259.55458793972	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696395	85701463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85696638_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_132147.known	chr8	+	864	3	FSM	ENSMUSG00000005161.16	ENSMUST00000138748.7	864	3	0	0	0	0	multi-exon	FALSE	canonical	3	3785	junction_2	120	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGGGTGGGGTGGGTGG	NA	False	NA	NA	False	NA	NA	NA	85696322	85697754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85696392_85696868_85696974_85697064
transcript_132149.known	chr8	-	1809	1	FSM	ENSMUSG00000052837.8	ENSMUST00000064922.7	1809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGGTCTCTTTTTTC	NA	False	NA	-1	True	AGTAAA	-21	NA	85705347	85703538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85703500_85705300
transcript_132150.known	chr8	-	1006	8	FSM	ENSMUSG00000052926.17	ENSMUST00000065049.15	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	398.770508397182	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8253	False	NA	-8	True	AATAAA	-14	NA	85692670	85684295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85684483_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
transcript_132151.known	chr8	-	1141	7	FSM	ENSMUSG00000052926.17	ENSMUST00000128972.9	1141	7	0	0	0	0	multi-exon	FALSE	canonical	3	1021	junction_4	88.9793983646402	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8230	False	NA	-8	True	AATAAA	-14	NA	85692693	85684295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
transcript_13216.known	chr10	-	1953	7	FSM	ENSMUSG00000019961.18	ENSMUST00000099355.12	1953	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	305.633086123432	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTACTTCATTAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	91007414	90984766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90994609_90994708_90999904_91000064_91001804_91001932_91006899
transcript_132163.known	chr8	+	2580	22	FSM	ENSMUSG00000052566.9	ENSMUST00000064495.8	2580	22	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_11	39.7071479254288	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTTTTTGCCTATCTG	NA	False	NA	18	True	AATAAA	-14	NA	85717245	85729978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
transcript_132179.nic	chr8	+	2822	21	NIC	ENSMUSG00000052566.9	novel	2516	23	NA	NA	-36	0	intron_retention	FALSE	canonical	3	335	junction_11	39.5465232352984	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTATGAGCGTTTTTGCC	NA	False	NA	12	True	AATAAA	-8	NA	85717195	85729972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
transcript_13219.known	chr10	-	1842	6	FSM	ENSMUSG00000019961.18	ENSMUST00000105293.11	1842	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	321.134862635622	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTACTTCATTAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	91007414	90984766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90985621_90987570_90987660_90994609_90994708_90999904_91000064_91001804_91001932_91006899
transcript_1322.known	chr1	+	4649	30	FSM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_23	82.0288369004111	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTATAAATAAAAGTAAATA	3304	False	NA	-21	True	NA	NA	NA	43973166	44042131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
transcript_132210.known	chr8	+	3080	16	FSM	ENSMUSG00000052566.9	ENSMUST00000210326.2	3080	16	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_11	30.1194658356058	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAGAAAAAAAAAAAAAATAT	NA	False	NA	NA	False	NA	NA	NA	85717270	85726335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832
transcript_132223.known	chr8	+	2516	23	FSM	ENSMUSG00000052566.9	ENSMUST00000209764.2	2516	23	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	90.9203629375412	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTATGAGCGTTTTTGCC	NA	False	NA	12	True	AATAAA	-8	NA	85717231	85729972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722396_85722467_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
transcript_132226.known	chr8	-	1256	7	FSM	ENSMUSG00000052456.10	ENSMUST00000064314.10	1256	7	0	0	0	0	multi-exon	FALSE	canonical	1	664	junction_3	477.58303524681	815	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
transcript_13223.known	chr10	-	3772	4	FSM	ENSMUSG00000019961.18	ENSMUST00000020123.7	3772	4	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	318.417266421838	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTTGTGTGGTCTCCAG	NA	False	NA	-18	True	AATAAA	-16	NA	91007440	90996278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_90999224_90999904_91000064_91001804_91001932_91006899
transcript_132236.known	chr8	+	902	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	163	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753451	85756915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85753864_85756167_85756246_85756503
transcript_132237.nnic	chr8	+	1019	3	NNC	ENSMUSG00000041203.10	novel	902	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	617	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753450	85756915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_85753864_85756051_85756246_85756503
transcript_132240.nnic	chr8	+	4863	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	-40	0	combination_of_known_splicesites	TRUE	canonical	3	102	junction_20	83.055035301232	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGGTGTCTCATTTCCT	NA	False	NA	17	True	AGTAAA	-19	NA	85763503	85784212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85763607_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
transcript_132242.nnic	chr8	+	4304	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	-5	-491	combination_of_known_splicesites	FALSE	canonical	3	140	junction_1	62.568282144834	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTTTAAAGAAAAATAC	NA	False	NA	NA	False	NA	NA	NA	85763538	85783718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85763607_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
transcript_132243.nnic	chr8	+	4812	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	140	junction_1	62.568282144834	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGGTGTCTCATTTCCT	NA	False	NA	17	True	AGTAAA	-19	NA	85763524	85784212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85763607_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
transcript_132244.known	chr8	+	4863	25	FSM	ENSMUSG00000031691.15	ENSMUST00000093360.12	4863	25	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	89.272513111384	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTGGTGTCTCATTT	NA	False	NA	14	True	AGTAAA	-16	NA	85763543	85784209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85763607_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
transcript_132246.nic	chr8	+	4837	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_1	70.9023193477399	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGGTGTCTCATTTCCT	NA	False	NA	17	True	AGTAAA	-19	NA	85763542	85784212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85763607_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
transcript_132247.known	chr8	+	4884	25	FSM	ENSMUSG00000031691.15	ENSMUST00000166592.2	4884	25	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	94.0795227306252	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGGTGTCTCATTTCCT	NA	False	NA	17	True	AGTAAA	-19	NA	85763796	85784212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85763921_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
transcript_132248.known	chr8	+	2941	25	FSM	ENSMUSG00000031691.15	ENSMUST00000211601.2	2941	25	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	77.0544540496452	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGCATCTGTCCATCT	NA	False	NA	NA	False	NA	NA	NA	85763796	85782299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85763921_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
transcript_13225.known	chr10	-	4441	3	FSM	ENSMUSG00000019961.18	ENSMUST00000216501.2	4441	3	0	0	0	0	multi-exon	FALSE	canonical	3	809	junction_2	36.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGTTTTGTGTGGTCTCC	NA	False	NA	-20	True	AATAAA	-14	NA	91007430	90996280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_91000064_91001804_91001932_91006899
transcript_132254.nnic	chr8	+	4963	25	NIC	ENSMUSG00000031691.15	novel	4884	25	NA	NA	-66	0	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	75.1550134167154	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGGTGTCTCATTTCCT	NA	False	NA	17	True	AGTAAA	-19	NA	85763730	85784212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85763921_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
transcript_132263.known	chr8	+	1907	10	FSM	ENSMUSG00000008167.15	ENSMUST00000095220.4	1907	10	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_4	11.5864970366477	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	False	NA	22	True	AATAAA	-22	NA	85786683	85793750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
transcript_132264.known	chr8	+	1993	9	FSM	ENSMUSG00000008167.15	ENSMUST00000139721.8	1993	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	8.18535277187245	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGAGCTTTCTGTGAC	NA	False	NA	25	True	AATAAA	-25	NA	85786684	85793753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
transcript_13227.known	chr10	-	3534	15	FSM	ENSMUSG00000019988.8	ENSMUST00000020163.7	3534	15	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_9	20.2858400398517	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGTCTGAGCTTGAACC	NA	False	NA	-1	True	AATAAA	-19	NA	92558282	92520607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_92522158_92522581_92522649_92525496_92525654_92526489_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
transcript_132273.known	chr8	+	1138	4	FSM	ENSMUSG00000008167.15	ENSMUST00000145479.8	1138	4	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	11.2249721603218	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CACAACAAAAAACAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	85786725	85791441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012
transcript_132277.known	chr8	+	1333	9	FSM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_2	36.5391485259304	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCATCCTTGGTGTCAG	NA	False	NA	23	True	AATAAA	-29	NA	85798385	85801791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85798683_85799080_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
transcript_132279.known	chr8	-	1238	9	FSM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	13.3410784796432	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807375	85801663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806467_85806748_85806855_85806941_85807063_85807141
transcript_132286.known	chr8	-	1406	8	FSM	ENSMUSG00000005150.17	ENSMUST00000131909.8	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_4	7.90763000177031	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807261	85801663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
transcript_132289.known	chr8	-	1561	7	FSM	ENSMUSG00000005150.17	ENSMUST00000136696.8	1561	7	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	8.39477350630869	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807332	85801663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85801973_85802451_85802567_85802652_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
transcript_132291.known	chr8	+	922	4	FSM	ENSMUSG00000059355.14	ENSMUST00000079764.14	922	4	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	13.7679176187089	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807368	85808968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808574
transcript_132295.known	chr8	+	659	2	FSM	ENSMUSG00000060038.15	ENSMUST00000129826.2	659	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTAGTCTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85798434	85799491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85798683_85799080
transcript_132296.known	chr8	+	798	3	FSM	ENSMUSG00000059355.14	ENSMUST00000148592.2	798	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	13.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807601	85808968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85807908_85808405_85808504_85808574
transcript_132297.known	chr8	+	630	4	FSM	ENSMUSG00000059355.14	ENSMUST00000140621.2	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	280.064675070281	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCACTGTTGCTTCTCT	NA	False	NA	29	True	TATAAA	-18	NA	85807616	85808961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808611
transcript_132299.nnic	chr8	+	3216	24	NNC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	-14	-698	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	52.1592370663352	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCAGGTCACCCAGTGCA	NA	False	NA	12	True	ATTAAA	-14	NA	85809884	85824213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_85810118_85811029_85811133_85811236_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
transcript_132303.known	chr8	+	3822	24	FSM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_7	31.1019422681999	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACACACCTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	85809943	85824911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
transcript_132312.nnic	chr8	+	3066	23	NIC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	-14	-698	combination_of_known_splicesites	FALSE	canonical	2	5	junction_6	54.501876531497	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCAGGTCACCCAGTGCA	NA	False	NA	12	True	ATTAAA	-14	NA	85809884	85824213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
transcript_132315.nic	chr8	+	3067	23	NIC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	-1	-698	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	54.9261901431035	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCAGGTCACCCAGTGCA	NA	False	NA	12	True	ATTAAA	-14	NA	85809897	85824213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_85810118_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
transcript_13232.nic	chr10	-	1688	12	ISM	ENSMUSG00000019988.8	ENSMUST00000020163.7	3534	15	-11	5965	-11	803	5prime_fragment	FALSE	canonical	3	126	junction_6	21.1061856899859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTGAAAAATTTGAAAAGC	NA	False	NA	NA	False	AAGAAA	-1	NA	92558293	92526572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
transcript_132329.known	chr8	+	2820	1	FSM	ENSMUSG00000005142.11	ENSMUST00000210991.2	2820	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	85809898	85812718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_85809900_85812700
transcript_132330.known	chr8	-	1587	4	FSM	ENSMUSG00000074194.5	ENSMUST00000098550.4	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	2.16024689946929	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTGCTTAGTGTAC	NA	False	NA	NA	False	NA	NA	NA	85846266	85836275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85837672_85838838_85838900_85840135_85840263_85846263
transcript_132341.known	chr8	-	3474	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	1304	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	-8	True	AATAAA	-15	NA	86026431	85987020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
transcript_13236.known	chr10	+	3615	17	FSM	ENSMUSG00000020015.11	ENSMUST00000069965.9	3615	17	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_16	22.6329405955126	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTGTGGAGTCAC	NA	False	NA	15	True	TATAAA	-2	NA	92996751	93077190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_92997063_93044033_93044181_93047772_93047938_93052204_93052339_93053825_93053952_93057448_93057506_93060797_93060913_93061885_93061981_93062574_93062638_93064506_93064631_93068241_93068363_93071299_93071398_93071888_93071995_93072782_93072826_93073655_93073747_93074827_93074906_93075449
transcript_132366.known	chr8	+	1287	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	9	True	AATAAA	-17	NA	86026419	86034700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
transcript_132370.known	chr8	+	1041	6	FSM	ENSMUSG00000031697.13	ENSMUST00000210146.2	1041	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	398.413353189875	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86032845_86032948_86034214
transcript_132372.nnic	chr8	+	1320	6	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-39	0	combination_of_known_splicesites	FALSE	canonical	3	109	junction_2	378.03089820807	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026221	86034699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_86026622_86027737_86027868_86029990_86030081_86031837_86031951_86032845_86032948_86034214
transcript_132374.known	chr8	+	1466	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGAGTTGTGATTGTCAG	NA	False	NA	NA	False	AATAAA	-17	NA	86026317	86034907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
transcript_132389.known	chr8	+	777	5	FSM	ENSMUSG00000031697.13	ENSMUST00000211597.2	777	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	432.418995304323	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTTTGCACTGTAGCCC	NA	False	NA	NA	False	NA	NA	NA	86026260	86030363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86030331
transcript_13239.nic	chr10	+	4449	16	ISM	ENSMUSG00000020015.11	ENSMUST00000069965.9	3615	17	-290	0	-275	0	intron_retention	FALSE	canonical	3	223	junction_1	19.4712323413	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTGTGGAGTCAC	NA	False	NA	15	True	TATAAA	-2	NA	92996461	93077190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_92997063_93044033_93044181_93047772_93047938_93052204_93052339_93053825_93053952_93057448_93057506_93060797_93060913_93061885_93061981_93062574_93062638_93064506_93064631_93068241_93068363_93071299_93071398_93071888_93071995_93072782_93072826_93073655_93073747_93074827
transcript_132390.known	chr8	-	1587	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	19.3045763140937	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCATACCAGTGTGG	NA	False	NA	94	True	ATTAAA	-21	NA	86159462	86135387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
transcript_132393.nic	chr8	-	529	3	ISM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	-90	3370	-90	114	5prime_fragment	FALSE	canonical	3	281	junction_2	9.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACGAGGAAGAGAGAGGTAT	NA	False	NA	NA	False	NA	NA	NA	86159552	86138757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_86138925_86153488_86153586_86159287
transcript_13240.known	chr10	-	4212	5	FSM	ENSMUSG00000008398.17	ENSMUST00000008542.12	4212	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	2.48746859276655	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTTGTTCCCTTCCATT	NA	False	NA	NA	False	AATAAA	-33	NA	93146997	93083275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_93085971_93090550_93090674_93100741_93101543_93120630_93120840_93146613
transcript_132408.known	chr8	+	3639	12	FSM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	271.645643020279	697	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGCAGCTTGGTCAATAA	NA	False	NA	13	True	AATAAA	-19	NA	86219204	86254189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_86219319_86219533_86219799_86229893_86229984_86232207_86232317_86235807_86235939_86238741_86238986_86242786_86242867_86244605_86244743_86246076_86246252_86247967_86248124_86249884_86249998_86252164
transcript_13241.known	chr10	-	931	2	FSM	ENSMUSG00000008398.17	ENSMUST00000133365.2	931	2	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATGTACATGAACATGA	NA	False	NA	NA	False	NA	NA	NA	93146997	93120292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_93120840_93146613
transcript_132436.known	chr8	-	2919	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCAGCATTCTTCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	86281973	86264261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
transcript_132439.nic	chr8	-	747	6	ISM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	-61	9065	-61	0	5prime_fragment	FALSE	canonical	3	738	junction_1	43.0562422884301	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAGACCGCTGTAAA	NA	False	NA	NA	False	NA	NA	NA	86282034	86273326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
transcript_132442.known	chr8	-	2932	9	FSM	ENSMUSG00000036902.12	ENSMUST00000216286.2	2932	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	4.55521678957215	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAACTCATTGTGTTTT	NA	False	NA	NA	False	TATAAA	-22	NA	86427553	86366060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_86367746_86369041_86369156_86374344_86374574_86389807_86389936_86390015_86390061_86396162_86396412_86397018_86397160_86400702_86400760_86427269
transcript_132443.known	chr8	-	4936	9	FSM	ENSMUSG00000036902.12	ENSMUST00000209479.2	4936	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	5.7649262788001	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAATTACTGTGAATTC	NA	False	NA	NA	False	NA	NA	NA	86427383	86363865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_86367746_86369041_86369156_86374344_86374574_86389807_86389936_86390036_86390061_86396162_86396412_86397018_86397160_86400702_86400760_86427269
transcript_132449.known	chr8	-	3306	18	FSM	ENSMUSG00000031703.9	ENSMUST00000034140.9	3306	18	0	0	0	0	multi-exon	FALSE	canonical	1	110	junction_3	53.6212528231601	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAACGCTGTGGCAAG	NA	False	NA	-21	True	AATAAA	-13	NA	86567550	86444206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_86445557_86449259_86449378_86452142_86452226_86452794_86452920_86459001_86459081_86462753_86462798_86464745_86464855_86466856_86467008_86490863_86491037_86493586_86493682_86502768_86502851_86507144_86507207_86537173_86537269_86557811_86557887_86561649_86561708_86562974_86563121_86565556_86565630_86567162
transcript_13245.known	chr10	+	2029	19	FSM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	42.1416262935671	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGTGTCATTTTTG	NA	False	NA	21	True	AATACA	-20	NA	93289272	93320736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
transcript_132470.known	chr8	+	5351	32	FSM	ENSMUSG00000036879.16	ENSMUST00000053771.14	5351	32	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	17.4946996581545	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTCACGGAAGCTGAACA	NA	False	NA	NA	False	NA	NA	NA	86567630	86788005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_86567733_86569632_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
transcript_132475.nic	chr8	+	4639	32	NIC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	21.9062423691205	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCAATGTCTGCTTTCC	NA	False	NA	8	True	NA	NA	NA	86567590	86787270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_86567733_86569649_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
transcript_132476.nnic	chr8	+	4589	32	NIC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	24.7210030475169	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCAATGTCTGCTTTCC	NA	False	NA	8	True	NA	NA	NA	86567611	86787270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_86567687_86569632_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
transcript_13248.nic	chr10	+	1961	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_16	100.405509988178	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGTGTCATTTTTG	NA	False	NA	21	True	AATACA	-20	NA	93289257	93320736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
transcript_132481.nic	chr8	+	4547	31	NIC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	24.2166379903478	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCAATGTCTGCTTTCC	NA	False	NA	8	True	NA	NA	NA	86567590	86787270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_86567733_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
transcript_132486.known	chr8	+	2859	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	34.038693468775	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350671	87443259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
transcript_132490.known	chr8	+	2371	13	FSM	ENSMUSG00000047866.21	ENSMUST00000122188.10	2371	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	73.1522385166715	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350733	87443259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_87351045_87358013_87358249_87360496_87360560_87364600_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
transcript_132495.known	chr8	-	1968	2	FSM	ENSMUSG00000036840.6	ENSMUST00000045296.6	1968	2	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	0	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGGCAGTTTGCAAAAAA	-5	True	NA	NA	False	ATTAAA	-21	NA	87472562	87450634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_87452485_87472444
transcript_132506.known	chr8	-	6469	7	FSM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	32.4790530786981	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGAGGGTGGTGCTT	NA	False	NA	-8	True	NA	NA	NA	87611886	87567766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_87571670_87573442_87573551_87575074_87575183_87578252_87578350_87579786_87579918_87587053_87588739_87611449
transcript_132519.nic	chr8	-	1491	2	ISM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	-87	20005	-87	-16825	5prime_fragment	FALSE	canonical	3	339	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTCCAAGAAGACCGAGAC	NA	False	NA	NA	False	AATAAA	-2	NA	87611973	87587771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_87588739_87611449
transcript_132520.known	chr8	+	538	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	973	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCTCAGACACTAAAG	NA	False	NA	37	True	AATAAA	-26	NA	87774316	87774854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_87774300_87774900
transcript_132521.nnic	chr8	+	608	5	NIC	ENSMUSG00000097248.10	novel	498	4	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	79.1023861839831	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGAGTGTGTCCATTCCTC	175	False	NA	5	True	AATAAA	-13	NA	88199416	88252180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_88199589_88240436_88240525_88248363_88248442_88250923_88251056_88252042
transcript_132522.nic	chr8	+	562	5	NIC	ENSMUSG00000097248.10	novel	432	5	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	86.1434124004848	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGAGTGTGTCCATTCCTC	198	False	NA	5	True	AATAAA	-13	NA	88199732	88252180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_88199859_88240436_88240525_88248363_88248442_88250923_88251056_88252042
transcript_132523.known	chr8	+	682	4	FSM	ENSMUSG00000097248.10	ENSMUST00000181159.8	682	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	80.2509951478623	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	198	False	NA	7	True	AATAAA	-15	NA	88199439	88252182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88251859
transcript_132524.known	chr8	+	498	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182174.8	498	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	31.0590834807897	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGTGTGTCCATTCCTCC	198	False	NA	6	True	AATAAA	-14	NA	88199439	88252181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88252042
transcript_132525.known	chr8	+	447	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182758.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	69.6866000191014	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	227	False	NA	7	True	AATAAA	-15	NA	88199761	88252182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88199859_88248363_88248442_88250923_88251056_88252042
transcript_132526.known	chr8	+	1452	3	FSM	ENSMUSG00000097248.10	ENSMUST00000180806.9	1452	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	38	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGAGTGTGTCCATTCCTC	14	False	NA	5	True	AATAAA	-13	NA	88199471	88252180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88199589_88248363_88248442_88250923
transcript_132527.known	chr8	-	2800	3	FSM	ENSMUSG00000031654.17	ENSMUST00000034076.16	2800	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCCTTTCCTTTCCTTT	100	False	NA	NA	False	AATAAA	-17	NA	88199237	88195032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_88197080_88198319_88198440_88198604
transcript_132530.known	chr8	-	4334	6	FSM	ENSMUSG00000045333.16	ENSMUST00000165770.9	4334	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	8.74070935336486	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGCCTGGTTCTCTCCTC	NA	False	NA	NA	False	AATAAA	-22	NA	88531067	88388437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_88389136_88413056_88413173_88414583_88414716_88500194_88500280_88506826_88510042_88530979
transcript_132532.known	chr8	+	728	6	FSM	ENSMUSG00000036810.17	ENSMUST00000117775.2	728	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	74.0027026533491	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGGCCGGTATCCTCCG	NA	False	NA	NA	False	NA	NA	NA	88845434	88857698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88857344
transcript_132533.known	chr8	+	1731	6	FSM	ENSMUSG00000036810.17	ENSMUST00000095214.10	1731	6	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	26.3256528883901	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTAGTGGTTAGAGATT	NA	False	NA	9	True	AATAAA	-11	NA	88845396	88861734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88860415
transcript_132535.known	chr8	+	1616	5	FSM	ENSMUSG00000036810.17	ENSMUST00000128290.2	1616	5	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	25.4656631564937	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAATTTAAAAA	NA	False	NA	NA	False	AGTAAA	-31	NA	88845427	88861108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88857030_88860415
transcript_132536.known	chr8	+	2209	4	FSM	ENSMUSG00000036810.17	ENSMUST00000121097.8	2209	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	27.6526068692749	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTGTGGTTTATT	NA	False	NA	17	True	NA	NA	NA	88845427	88858315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322
transcript_132537.known	chr8	+	3251	15	FSM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	19.6926641267291	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	AATAAA	-16	NA	88864482	88898655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
transcript_132540.nic	chr8	+	1178	7	ISM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	-37	21720	-37	-8438	5prime_fragment	FALSE	canonical	3	249	junction_1	17.9164728671689	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAGAAATCCCTCATAAA	NA	False	NA	NA	False	NA	NA	NA	88864445	88876935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719
transcript_132542.known	chr8	+	4597	13	FSM	ENSMUSG00000036779.13	ENSMUST00000118952.8	4597	13	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	36.9785035151806	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTTTGCCTGCTCATT	NA	False	NA	14	True	AGTAAA	-15	NA	88925841	88986350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88925942_88926584_88927131_88969868_88969993_88972225_88972273_88972992_88973114_88974136_88974245_88975732_88975862_88977267_88977482_88978582_88978710_88978809_88978914_88979013_88979202_88981736_88981902_88983726
transcript_132546.known	chr8	+	4624	13	FSM	ENSMUSG00000036779.13	ENSMUST00000119033.8	4624	13	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	34.7235110871902	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTTTGCCTGCTCATT	NA	False	NA	14	True	AGTAAA	-15	NA	88925840	88986350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_88925942_88926558_88927131_88969868_88969993_88972225_88972273_88972992_88973114_88974136_88974245_88975732_88975862_88977267_88977482_88978582_88978710_88978809_88978914_88979013_88979202_88981736_88981902_88983726
transcript_132549.known	chr8	-	3625	17	FSM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	0	0	0	0	multi-exon	TRUE	canonical	3	463	junction_12	36.2439650148821	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89088822	89057686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
transcript_132553.nic	chr8	-	2306	16	ISM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	-91	1747	-91	0	5prime_fragment	FALSE	canonical	3	463	junction_11	32.0534276204936	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTCTTGTCTGGTTTGA	NA	False	NA	0	True	AATAAA	-35	NA	89088913	89059433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
transcript_132555.nic	chr8	-	1102	7	ISM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	-91	15931	-91	10542	5prime_fragment	FALSE	canonical	3	463	junction_2	25.4885595251412	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACGAACAGATGCCTGTCA	NA	False	NA	NA	False	NA	NA	NA	89088913	89073617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
transcript_132556.nic	chr8	-	882	5	ISM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	-91	23610	-91	2863	5prime_fragment	FALSE	canonical	3	473	junction_1	25.4017715917611	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCAAGAATAACGACTACC	NA	False	NA	NA	False	ATTAAA	-33	NA	89088913	89081296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
transcript_132557.nic	chr8	-	517	2	ISM	ENSMUSG00000031660.14	ENSMUST00000135471.2	511	4	-271	4042	-91	-4042	5prime_fragment	FALSE	canonical	3	543	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGGAAAAAGAGGAAGAAAGG	NA	False	NA	-2	True	NA	NA	NA	89088913	89088201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_89088339_89088533
transcript_132559.known	chr8	+	3035	10	FSM	ENSMUSG00000031661.13	ENSMUST00000034086.13	3035	10	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_7	4.46661138716484	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTGTTTCACATCCTT	NA	False	NA	NA	False	NA	NA	NA	89247981	89320246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_89248160_89248274_89248308_89248914_89249049_89300825_89300893_89309830_89309938_89311781_89311878_89315781_89315930_89316355_89316441_89317350_89317479_89318187
transcript_132563.known	chr8	-	1699	4	FSM	ENSMUSG00000031662.9	ENSMUST00000034087.9	1699	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	1.63299316185545	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTGCAGGATGGAGAGT	NA	False	NA	NA	False	AGTAAA	-17	NA	89362756	89353190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_89354456_89356541_89356694_89358396_89358536_89362613
transcript_132566.known	chr8	+	4638	18	FSM	ENSMUSG00000036712.16	ENSMUST00000211554.2	4638	18	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	16.8699483019167	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCTATAAATATTGCTGT	NA	False	NA	8	True	TATAAA	-17	NA	89423674	89475083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_89423728_89428932_89429067_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
transcript_132567.known	chr8	+	4476	17	FSM	ENSMUSG00000036712.16	ENSMUST00000209559.2	4476	17	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	10.7172466146861	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCTATAAATATTGCTGT	NA	False	NA	8	True	TATAAA	-17	NA	89423702	89475083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_89423728_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
transcript_13257.known	chr10	+	3225	3	FSM	ENSMUSG00000015889.9	ENSMUST00000216146.2	3225	3	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACCAAAAAA	NA	False	NA	NA	False	AAAACA	-26	NA	93289312	93300047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_93289531_93295678_93295810_93297171
transcript_132571.nic	chr8	+	2557	14	ISM	ENSMUSG00000036712.16	ENSMUST00000209559.2	4476	17	-42	6059	5	4190	5prime_fragment	TRUE	canonical	3	35	junction_1	10.2518579640949	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACAGTCCTTAGTTTG	NA	False	NA	NA	False	ATTAAA	-26	NA	89423660	89469024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_89423728_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913
transcript_132576.nnic	chr8	-	5327	4	NNC	ENSMUSG00000031665.8	novel	5265	4	NA	NA	492	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	100.141011689628	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCTGTGTTTGTAGAG	NA	False	NA	NA	False	GATAAA	-9	NA	89770298	89753862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_89755447_89756571_89760027_89768979_89769073_89770103
transcript_132577.known	chr8	-	5265	4	FSM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	110.426446107805	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCTGTGTTTGTAGAG	NA	False	NA	NA	False	GATAAA	-9	NA	89770790	89753862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_89755447_89756571_89760027_89768979_89769073_89770657
transcript_13258.known	chr10	+	5319	20	FSM	ENSMUSG00000020017.15	ENSMUST00000129421.8	5319	20	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	3.06530942706548	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCGTGTGGTTTACTTT	NA	False	NA	NA	False	AATAAA	-31	NA	93324629	93355166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_93325240_93325735_93325797_93325901_93325930_93326608_93326684_93326776_93326850_93326960_93327028_93327671_93327710_93328314_93328441_93330472_93330613_93332444_93332493_93333336_93333485_93334620_93334717_93334817_93334877_93336478_93336560_93339123_93339190_93339265_93339432_93343276_93343412_93349895_93350005_93350120_93350191_93352043
transcript_132585.nic	chr8	+	2821	6	ISM	ENSMUSG00000056608.15	ENSMUST00000048665.8	12008	40	-47	77569	-47	0	5prime_fragment	FALSE	canonical	2	7	junction_2	4.75815090134813	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAAAAAATATGCAGAAGA	NA	False	NA	11	True	NA	NA	NA	91554932	91703575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_91555543_91576261_91576388_91658876_91660491_91683010_91683343_91699752_91699865_91703548
transcript_132593.nnic	chr8	+	2212	5	NNC	ENSMUSG00000056608.15	novel	2279	5	NA	NA	-105	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	2.27760839478607	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAAAAAATATGCAGAAGA	4070	False	NA	11	True	NA	NA	NA	91635136	91703575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_91635264_91658876_91660491_91683010_91683343_91699752_91699865_91703548
transcript_1326.nic	chr1	+	3783	29	ISM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	-21	1552	-21	-917	5prime_fragment	FALSE	canonical	3	77	junction_23	81.4374055358357	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAAAAATTGTATTCAAG	3283	False	NA	NA	False	AAGAAA	-17	NA	43973145	44040579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478
transcript_13260.known	chr10	-	861	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTGTTCACTTGAAAG	NA	False	NA	NA	False	GATAAA	-36	NA	93425568	93418890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
transcript_132602.known	chr8	-	1885	1	FSM	ENSMUSG00000074171.3	ENSMUST00000209493.2	1885	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGTTTTTCTATGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	91635044	91633159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_91633200_91635000
transcript_132603.known	chr8	+	4925	22	FSM	ENSMUSG00000031666.16	ENSMUST00000034091.8	4925	22	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_12	4.6442610819949	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTGTTTAGTTATATTG	NA	False	NA	NA	False	AATAAA	-15	NA	91796684	91850472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_91797035_91800770_91800902_91802542_91802744_91805507_91805573_91809926_91810056_91812060_91812222_91812302_91812368_91813610_91813798_91816682_91816850_91822176_91822287_91823391_91823496_91826667_91826806_91827975_91828141_91828825_91828938_91832907_91833175_91833330_91833612_91833685_91833863_91839145_91839218_91840612_91840713_91841668_91841878_91842289_91842455_91848903
transcript_132607.known	chr8	-	2200	11	FSM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_9	146.200581394193	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTTTTTAACTTCCAG	NA	False	NA	-3	True	AATAAA	-17	NA	91860625	91850126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91858550_91858632_91860527
transcript_132612.known	chr8	-	1171	10	FSM	ENSMUSG00000031667.17	ENSMUST00000109609.9	1171	10	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	96.0081015100057	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGGCTATCAGTGTTG	NA	False	NA	-9	True	AGTAAA	-12	NA	91860651	91851096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
transcript_132613.known	chr8	-	2079	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_9	63.7020456287233	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGCTGTTAAATAATTTT	NA	False	NA	-73	True	AATAAA	-18	NA	91860655	91850196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
transcript_13262.known	chr10	+	1060	1	FSM	ENSMUSG00000090610.4	ENSMUST00000170703.4	1060	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGAATTGGAGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	93614521	93615581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_93614500_93615600
transcript_132621.known	chr8	+	932	1	FSM	ENSMUSG00000031666.16	ENSMUST00000210533.2	932	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAAGAAACATGGC	NA	False	NA	NA	False	TTTAAA	-44	NA	91796697	91797629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_91796700_91797600
transcript_132627.known	chr8	+	3564	9	FSM	ENSMUSG00000055932.16	ENSMUST00000069718.15	3564	9	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_7	44.2492937796752	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGTCCGTGCTTTTCTCC	NA	False	NA	16	True	AATAAA	-24	NA	92040152	92395067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399_92249525_92392909
transcript_132628.known	chr8	+	4707	8	FSM	ENSMUSG00000055932.16	ENSMUST00000128081.8	4707	8	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_7	44.6025532352358	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	AATGAA	-11	NA	92040185	92252858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399
transcript_132638.known	chr8	-	2748	4	FSM	ENSMUSG00000031734.14	ENSMUST00000175795.4	2748	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.82842712474619	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCAGGTCTGCCACATGG	NA	False	NA	NA	False	AATAAA	-27	NA	92528695	92525152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_92525605_92526038_92526106_92526300_92527427_92527592
transcript_132641.known	chr8	-	732	6	FSM	ENSMUSG00000031736.12	ENSMUST00000180102.8	732	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	4.12795348811006	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGGCTGTGGAACACCT	NA	False	NA	NA	False	NA	NA	NA	93082392	93062838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_93063000_93071480_93071668_93072977_93073092_93073411_93073541_93077318_93077383_93082315
transcript_132642.known	chr8	+	2450	3	FSM	ENSMUSG00000031737.12	ENSMUST00000034184.12	2450	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGCCACTCATTACTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	93084376	93088084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_93085058_93086164_93086571_93086721
transcript_132643.known	chr8	-	1229	1	FSM	ENSMUSG00000078967.6	ENSMUST00000181181.2	1229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATAAAATAAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	93443603	93442374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_93442400_93443600
transcript_132645.known	chr8	+	3078	13	FSM	ENSMUSG00000031740.9	ENSMUST00000034187.9	3078	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_9	5.63964143856288	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGGCTCTGTTTTAGC	NA	False	NA	4	True	AATAAA	-19	NA	93553918	93580048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_93554406_93557248_93557476_93558312_93558462_93559391_93559521_93559696_93559871_93562596_93562771_93563533_93563708_93565880_93566037_93567017_93567160_93570447_93570585_93572708_93572869_93576753_93576864_93579189
transcript_132647.known	chr8	+	2811	14	FSM	ENSMUSG00000033192.6	ENSMUST00000046290.3	2811	14	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_10	2.47591952914324	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGGTTCTGTTGGTAC	NA	False	NA	NA	False	AATAAA	-30	NA	93581966	93645907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_93582254_93591528_93591669_93596275_93596494_93597765_93597879_93599675_93599737_93600860_93600920_93602182_93602218_93606027_93606083_93613193_93613277_93615900_93616027_93617300_93617455_93635814_93635914_93640870_93641007_93644662
transcript_132653.known	chr8	-	3880	14	FSM	ENSMUSG00000031751.15	ENSMUST00000053766.14	3880	14	0	0	0	0	multi-exon	TRUE	canonical	3	217	junction_1	15.7862947074897	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTTCCATTTCAGATG	NA	False	NA	-5	True	AATAAA	-17	NA	94739470	94698215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_94699943_94700686_94700872_94701363_94701448_94702661_94702797_94706945_94707050_94709939_94710131_94711461_94711573_94711966_94712101_94714001_94714135_94714346_94714388_94725725_94725879_94726932_94727098_94731760_94731854_94738846
transcript_132668.known	chr8	-	1184	7	FSM	ENSMUSG00000031754.11	ENSMUST00000212981.2	1184	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	876.397677363929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTTTTTTAAGTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	94763634	94746075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763253
transcript_132669.known	chr8	-	5010	7	FSM	ENSMUSG00000031754.11	ENSMUST00000034204.11	5010	7	0	0	0	0	multi-exon	FALSE	canonical	3	2190	junction_4	118.898649651242	2392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTAATTGTTTGGGATAT	NA	False	NA	NA	False	AATAAA	-17	NA	94763659	94742123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
transcript_132680.known	chr8	+	5214	13	FSM	ENSMUSG00000033009.16	ENSMUST00000060632.8	5214	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	44.1823085509222	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGGTGGTAATTTATA	NA	False	NA	7	True	AATAAA	-17	NA	94763918	94794549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94764071_94765595_94765739_94773899_94773947_94778702_94778804_94781231_94781349_94781880_94781973_94782163_94782293_94782671_94782786_94784343_94784424_94784677_94784992_94789594_94789718_94790096_94790156_94790806
transcript_132693.known	chr8	+	671	2	FSM	ENSMUSG00000033009.16	ENSMUST00000141636.2	671	2	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGTTATCAGGGAGATT	NA	False	NA	NA	False	NA	NA	NA	94763887	94766080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94764071_94765592
transcript_132698.known	chr8	-	3064	17	FSM	ENSMUSG00000031755.7	ENSMUST00000034206.6	3064	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_15	7.54569413639329	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTGTTGTTTATAAATT	NA	False	NA	-3	True	AATAAA	-15	NA	94825556	94794581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94808766_94808983_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94819022_94819251_94824863
transcript_1327.known	chr1	+	4631	29	FSM	ENSMUSG00000041763.15	ENSMUST00000188313.7	4631	29	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_23	40.426725727682	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAATTGGTCTTAATTT	3312	False	NA	8	True	AATAAA	-18	NA	43973174	44042160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
transcript_132703.known	chr8	+	536	3	FSM	ENSMUSG00000031760.10	ENSMUST00000034211.10	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	1	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAAGACTGGTCTCTTT	NA	False	NA	7	True	AATAAA	-17	NA	94879234	94880774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94879459_94879652_94879719_94880528
transcript_132704.known	chr8	+	511	3	FSM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	13494	junction_2	132	3253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCTGTGCATTGGT	NA	False	NA	37	True	AATAAA	-23	NA	94899291	94900196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94899504_94899754_94899821_94899963
transcript_132707.known	chr8	+	388	3	FSM	ENSMUSG00000031762.8	ENSMUST00000212806.2	388	3	0	0	0	0	multi-exon	TRUE	canonical	3	461	junction_1	6516.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCTTGTCTCTGTGCAT	NA	False	NA	33	True	AATAAA	-19	NA	94899487	94900192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94899581_94899754_94899821_94899963
transcript_132708.known	chr8	+	549	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	0	0	0	0	multi-exon	FALSE	canonical	3	14682	junction_2	74.5	4540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905709	94906955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94905967_94906450_94906517_94906729
transcript_13271.nnic	chr10	+	3903	7	NIC	ENSMUSG00000020020.9	novel	2449	6	NA	NA	-47	1333	intron_retention	FALSE	canonical	3	11	junction_1	4.57043640026736	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACCAAATCTAGCCTTTA	NA	False	NA	NA	False	ATTAAA	-17	NA	93669632	93695283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_93669754_93679839_93679914_93681472_93682977_93686011_93686208_93688571_93688681_93691975_93692182_93693590
transcript_132711.known	chr8	+	633	2	FSM	ENSMUSG00000031765.9	ENSMUST00000212291.2	633	2	0	0	0	0	multi-exon	FALSE	canonical	3	14831	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905838	94906955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94905967_94906450
transcript_132712.known	chr8	+	1085	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	False	NA	27	True	AATAAA	-16	NA	94905868	94906953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94905900_94907000
transcript_132717.known	chr8	+	2928	23	FSM	ENSMUSG00000032939.15	ENSMUST00000212824.2	2928	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	328.081966678305	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAGCAAGGAATCAAAGCC	NA	False	NA	NA	False	ATTAAA	-15	NA	94941228	95041694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94941260_94947187_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
transcript_132720.known	chr8	+	2707	22	FSM	ENSMUSG00000032939.15	ENSMUST00000079961.14	2707	22	0	0	0	0	multi-exon	FALSE	canonical	3	950	junction_1	70.7360075664432	2194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941191	95041488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
transcript_132721.known	chr8	+	1873	8	FSM	ENSMUSG00000031770.17	ENSMUST00000034220.8	1873	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	160.784175279808	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGACTCCCATTGTCC	NA	False	NA	28	True	AATAAA	-21	NA	95113122	95121986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95113367_95115983_95116062_95116151_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
transcript_132726.known	chr8	+	2342	16	FSM	ENSMUSG00000034361.11	ENSMUST00000048653.10	2342	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	2.64491125665032	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAAGCTCCTTCCTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	95259617	95297159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95259822_95274955_95275174_95277797_95277978_95278367_95278443_95280017_95280090_95281302_95281387_95281557_95281648_95282136_95282236_95282599_95282687_95284047_95284108_95284752_95284887_95286736_95286792_95289365_95289418_95290584_95290719_95295218_95295456_95296598
transcript_132729.known	chr8	+	2121	16	FSM	ENSMUSG00000034361.11	ENSMUST00000109537.2	2121	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	3.03315017762062	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTTTTTCTAAGTAACT	NA	False	NA	NA	False	AATAAA	-17	NA	95259694	95297018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95259822_95274955_95275174_95277797_95277978_95278367_95278443_95280017_95280090_95281302_95281387_95281557_95281648_95282136_95282236_95282599_95282687_95284047_95284108_95284752_95284887_95286736_95286792_95289365_95289418_95290584_95290719_95295221_95295456_95296598
transcript_132733.known	chr8	+	3852	15	FSM	ENSMUSG00000050079.11	ENSMUST00000060389.10	3852	15	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	22.9280151245375	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTCACAGCTCTCATT	8111	False	NA	8	True	AATAAA	-25	NA	95328564	95386903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95329059_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
transcript_132737.known	chr8	+	3397	15	FSM	ENSMUSG00000050079.11	ENSMUST00000211983.2	3397	15	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	38.5556184529014	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTCACAGCTCTCATT	8240	False	NA	8	True	AATAAA	-25	NA	95328693	95386903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95328733_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
transcript_13274.known	chr10	-	4424	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	0	0	0	0	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGGAGTGAAAGACCAGT	NA	False	NA	-14	True	AATAAA	-23	NA	93725676	93694350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
transcript_132740.nic	chr8	+	2201	13	ISM	ENSMUSG00000050079.11	ENSMUST00000060389.10	3852	15	-41	9943	-41	-6201	5prime_fragment	FALSE	canonical	3	105	junction_1	24.6862253538734	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAATTTTGCCAAGGTAAG	8070	False	NA	NA	False	AAGAAA	-2	NA	95328523	95376960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_95329059_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822
transcript_13275.known	chr10	-	1876	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181091.8	1876	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	660.841047453924	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725637	93696790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715436_93715934_93716001_93722855_93722964_93725399
transcript_132752.nic	chr8	-	1835	9	NIC	ENSMUSG00000031774.9	novel	828	9	NA	NA	-2	717	intron_retention	FALSE	canonical	0	0	junction_3	229.797975132506	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3884	False	NA	-4	True	AATAAA	-23	NA	95328331	95301567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95323678_95323737_95328124
transcript_132753.nic	chr8	-	1798	9	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	41	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	197.424036023986	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3766	False	NA	-4	True	AATAAA	-23	NA	95328449	95301567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124_95328213_95328309
transcript_132755.known	chr8	-	2873	8	FSM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	171.915855070118	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTTGTCACTGTT	3590	False	NA	NA	False	NA	NA	NA	95328625	95300765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
transcript_132757.nic	chr8	-	1700	8	NIC	ENSMUSG00000031774.9	novel	828	9	NA	NA	-38	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	220.053796762037	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3823	False	NA	-4	True	AATAAA	-23	NA	95328392	95301567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328262
transcript_13276.known	chr10	-	1984	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181217.8	1984	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	666.978530389097	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725646	93696790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715535_93715934_93716001_93722855_93722964_93725399
transcript_132761.nnic	chr8	-	1692	7	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	-2	717	intron_retention	FALSE	canonical	0	0	junction_3	218.907451271587	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3872	False	NA	-4	True	AATAAA	-23	NA	95328343	95301567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95328124
transcript_132764.known	chr8	+	3092	2	FSM	ENSMUSG00000050079.11	ENSMUST00000121101.2	3092	2	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCCAGCTTTCTTGTTGT	8152	False	NA	NA	False	AATAAA	-24	NA	95328605	95352100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95329059_95349461
transcript_132765.known	chr8	+	2063	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	11.4612390255155	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGATGTGCATTGTCC	NA	False	NA	12	True	AGTAAA	-25	NA	95393227	95401053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
transcript_132767.known	chr8	-	1926	4	FSM	ENSMUSG00000031775.6	ENSMUST00000034227.6	1926	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.16024689946929	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTTCTGGGTCTTTT	417	False	NA	NA	False	ATTAAA	-16	NA	95422906	95401521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_95402908_95403853_95403977_95405972_95406147_95422663
transcript_132768.known	chr8	+	3315	3	FSM	ENSMUSG00000031778.14	ENSMUST00000034230.7	3315	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGAACTTTTCTCTGGG	2179	False	NA	NA	False	AATAAA	-24	NA	95498636	95509055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95498963_95504655_95504777_95506187
transcript_132769.known	chr8	+	1789	9	FSM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	12.7322179921646	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTGTTTTGTCTAT	NA	False	NA	9	True	AATAAA	-15	NA	95564948	95581523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95578478_95578584_95579742_95579899_95580232_95580287_95580741
transcript_13277.known	chr10	-	4479	12	FSM	ENSMUSG00000036099.17	ENSMUST00000047711.13	4479	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	11.4039285676849	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAGAAAAAAGAAAGA	3464	False	NA	NA	False	NA	NA	NA	93871610	93803961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829517_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
transcript_132774.known	chr8	-	1807	9	FSM	ENSMUSG00000031781.15	ENSMUST00000034233.15	1807	9	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_8	506.411394026635	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95564893	95549188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564581
transcript_132775.known	chr8	-	4359	9	FSM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_8	171.134997881789	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGGAGTGGTCTAGGG	NA	False	NA	NA	False	NA	NA	NA	95564986	95546431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
transcript_132778.known	chr8	+	831	8	FSM	ENSMUSG00000031782.16	ENSMUST00000159871.4	831	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	58.5585351662448	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGGTCTAAACCAGCGTC	NA	False	NA	NA	False	NA	NA	NA	95565030	95580752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95579742_95579899_95580232_95580287_95580741
transcript_13278.known	chr10	-	11138	12	FSM	ENSMUSG00000036099.17	ENSMUST00000119818.8	11138	12	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	12.5467719993354	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTGTGTGTGTCCCTTTT	3395	False	NA	NA	False	AATAAA	-18	NA	93871679	93797383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829529_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
transcript_132793.known	chr8	+	1580	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	0	0	0	0	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	1811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTGCTTTAATTGCATT	NA	False	NA	NA	False	AATAAA	-17	NA	95584077	95590870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
transcript_132794.known	chr8	-	2590	9	FSM	ENSMUSG00000040631.9	ENSMUST00000046461.9	2590	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.10653744329409	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGTTGATCAATAAATA	NA	False	NA	2	True	AATAAA	-18	NA	95602958	95590487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_95591876_95591969_95592091_95592248_95592388_95593084_95593275_95593375_95593496_95593755_95593871_95594019_95594128_95597487_95597697_95602758
transcript_132798.known	chr8	+	528	8	FSM	ENSMUSG00000031783.11	ENSMUST00000212124.2	528	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	713.417415096706	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAGACTCAGTTAAGCC	NA	False	NA	NA	False	GGGGCT	-19	NA	95584259	95590169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589437_95589513_95590079
transcript_132805.known	chr8	-	2558	8	FSM	ENSMUSG00000040631.9	ENSMUST00000212810.2	2558	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	1.82946406783796	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGGTGTGTGTTTCCC	NA	False	NA	34	True	AATAAA	-15	NA	95597832	95590455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_95591876_95591969_95592091_95592248_95592388_95593084_95593275_95593375_95593496_95593755_95593871_95594019_95594128_95597487
transcript_132806.nic	chr8	-	2466	9	NIC	ENSMUSG00000063605.6	novel	2304	9	NA	NA	-79	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	4.99843725578305	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGAGTTCTGAAAGTGTA	NA	False	NA	0	True	AATAAA	-19	NA	95644228	95629496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_95630020_95631884_95631989_95632559_95632731_95634342_95634553_95634901_95635019_95636371_95636481_95638055_95638283_95639710_95640437_95643949
transcript_132807.known	chr8	-	2304	9	FSM	ENSMUSG00000063605.6	ENSMUST00000077955.6	2304	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	3.67423461417477	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGAGTTCTGAAAGTGTA	NA	False	NA	0	True	AATAAA	-19	NA	95644726	95629496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_95630020_95631884_95631989_95632559_95632731_95634342_95634553_95634901_95635019_95636371_95636481_95638055_95638283_95639710_95640437_95644609
transcript_132812.known	chr8	+	3616	14	FSM	ENSMUSG00000031785.17	ENSMUST00000179619.9	3616	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	9.58857801774418	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGTTTGGGTTTGTCT	679	False	NA	46	True	NA	NA	NA	95703734	95740845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95704046_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
transcript_132814.known	chr8	+	3574	14	FSM	ENSMUSG00000031785.17	ENSMUST00000093271.8	3574	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	19.2826991162311	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAGTTGCCCGTCTCAG	7943	False	NA	28	True	AATAAA	-41	NA	95710998	95740827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95711286_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
transcript_132823.nic	chr8	-	3673	22	NIC	ENSMUSG00000031788.15	novel	3384	22	NA	NA	-75	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	22.097495779565	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCAATCTGAATCGTCAGT	NA	False	NA	-4	True	ATTAAA	-21	NA	95869250	95826455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95853153_95853336_95855823_95855963_95861344_95861488_95864542_95864748_95869059
transcript_132824.nnic	chr8	-	3651	22	NNC	ENSMUSG00000031788.15	novel	3384	22	NA	NA	-1134	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	27.0789556901636	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCAATCTGAATCGTCAGT	NA	False	NA	-4	True	ATTAAA	-21	NA	95870309	95826455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95853153_95853336_95855823_95855963_95861344_95861488_95864542_95864748_95870140
transcript_132830.known	chr8	-	3277	20	FSM	ENSMUSG00000031788.15	ENSMUST00000034240.15	3277	20	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_2	24.0325264354334	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCAATCTGAATCGTCAGT	NA	False	NA	-4	True	ATTAAA	-21	NA	95869175	95826455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95861344_95861488_95864542_95864748_95869059
transcript_132831.nnic	chr8	-	3330	20	NNC	ENSMUSG00000031788.15	novel	3277	20	NA	NA	-1134	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	29.2254584878102	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCAATCTGAATCGTCAGT	NA	False	NA	-4	True	ATTAAA	-21	NA	95870309	95826455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95861344_95861488_95864542_95864748_95870140
transcript_132834.known	chr8	-	3384	22	FSM	ENSMUSG00000031788.15	ENSMUST00000169748.9	3384	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	33.0343049892449	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGTGCAATCTGAATC	NA	False	NA	-10	True	ATTAAA	-15	NA	95869145	95826461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833120_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95853153_95853336_95855823_95855963_95861344_95861488_95864436_95864494_95869059
transcript_132835.known	chr8	+	3777	20	FSM	ENSMUSG00000031787.9	ENSMUST00000034239.9	3777	20	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	16.4357221924964	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCCCAAGCCTACCACCA	809	False	NA	NA	False	NA	NA	NA	95807813	95826839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_95807933_95809225_95809522_95813915_95814047_95816587_95816706_95820143_95820245_95820541_95820584_95821107_95821192_95821347_95821464_95821800_95821873_95821979_95822131_95822233_95822425_95822516_95822648_95822983_95823035_95823839_95823917_95824026_95824147_95824242_95824393_95824582_95824660_95824733_95824809_95824946_95825064_95825281
transcript_132842.known	chr8	-	536	3	FSM	ENSMUSG00000031789.18	ENSMUST00000184103.9	536	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAAAGAGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	96020702	96017250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96017716_96020183_96020221_96020668
transcript_132843.known	chr8	-	7232	2	FSM	ENSMUSG00000046556.8	ENSMUST00000057717.8	7232	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTTTGCTTATGCTTTC	NA	False	NA	NA	False	NA	NA	NA	96058578	96049638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96056441_96058148
transcript_132846.known	chr8	+	1758	7	FSM	ENSMUSG00000031792.16	ENSMUST00000034245.16	1758	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	19.6185852927495	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	12	True	AATAAA	-13	NA	96058911	96074135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
transcript_132847.known	chr8	+	5135	10	FSM	ENSMUSG00000031790.9	ENSMUST00000034243.7	5135	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	7.43531778858738	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATTCAGGAAGGTACAGG	NA	False	NA	NA	False	NA	NA	NA	96078895	96101708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96079647_96091941_96092091_96092921_96093051_96094555_96094864_96095186_96095349_96096108_96096363_96096760_96096900_96097323_96097475_96097633_96097750_96098732
transcript_132850.known	chr8	-	1295	6	FSM	ENSMUSG00000031796.8	ENSMUST00000034249.8	1295	6	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_1	23.7200337267888	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96161497	96146876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96151244_96151325_96161115
transcript_132852.known	chr8	-	1023	5	FSM	ENSMUSG00000031796.8	ENSMUST00000212684.2	1023	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	193.603977231874	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAAGAATTAGAGACGTCC	NA	False	NA	NA	False	NA	NA	NA	96161458	96147029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96161115
transcript_132853.nic	chr8	-	2081	5	NIC	ENSMUSG00000031796.8	novel	1295	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	468	junction_1	23.0054341406547	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96161472	96146876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_96147298_96147763_96148875_96149410_96149523_96151244_96151325_96161115
transcript_132855.known	chr8	-	2544	4	FSM	ENSMUSG00000031796.8	ENSMUST00000213086.2	2544	4	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_2	10.6562449087639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTATCTTTACTTTTTT	NA	False	NA	-9	True	AATAAA	-21	NA	96161472	96146879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96148875_96149410_96149523_96151244_96151325_96161115
transcript_132858.known	chr8	+	1288	9	FSM	ENSMUSG00000036598.5	ENSMUST00000041569.5	1288	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2.77263412660235	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTCCTCTCACTTGTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	96260712	96285518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96260901_96263092_96263220_96264719_96264882_96267426_96267583_96269249_96269331_96272521_96272678_96277824_96277933_96283818_96283975_96285364
transcript_132859.known	chr8	+	2519	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	2	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGTTGTCACTAACTG	NA	False	NA	NA	False	AATAAA	-14	NA	96360080	96371688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96360412_96364437_96364672_96369734
transcript_13286.known	chr10	+	8044	21	FSM	ENSMUSG00000020021.5	ENSMUST00000020208.5	8044	21	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	4.04474968323134	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGTGTGAAGTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	93871862	93981201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_93872173_93879163_93881496_93910044_93910193_93925438_93925507_93925593_93925625_93936263_93936416_93939103_93939261_93941846_93941935_93956314_93956366_93959100_93959160_93959405_93959478_93960751_93960821_93961410_93961495_93963230_93963311_93969141_93969245_93969862_93970007_93970878_93970982_93973297_93973426_93974145_93974275_93975600_93975750_93977614
transcript_132863.known	chr8	+	654	2	FSM	ENSMUSG00000031669.11	ENSMUST00000212434.2	654	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTAAGAATACATACTGC	NA	False	NA	NA	False	NA	NA	NA	96360181	96364861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96360412_96364437
transcript_132867.known	chr8	+	2738	14	FSM	ENSMUSG00000036564.18	ENSMUST00000080666.8	2738	14	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	6.1711295754251	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCGTGTTTCCTATC	NA	False	NA	9	True	AATAAA	-14	NA	96429690	96441584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96429806_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
transcript_132869.nic	chr8	+	1641	7	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	127.266998428064	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442511	96445638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_96442899_96442980_96443123_96443234_96443430_96443548_96443607_96444548_96444730_96444820_96444964_96445103
transcript_132870.known	chr8	+	1707	7	FSM	ENSMUSG00000031671.12	ENSMUST00000034096.6	1707	7	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_4	62.8342175004105	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442508	96445638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96442899_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
transcript_132877.nic	chr8	+	2583	6	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	3	0	intron_retention	FALSE	canonical	3	282	junction_1	51.2312404690732	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442511	96445638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_96442899_96442980_96443123_96443234_96443430_96443548_96444730_96444820_96444964_96445103
transcript_132898.known	chr8	+	378	3	FSM	ENSMUSG00000031671.12	ENSMUST00000141900.8	378	3	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	202	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGATGGGGAGAGGAGG	NA	False	NA	NA	False	TATAAA	-6	NA	96443238	96445147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96443430_96444820_96444964_96445103
transcript_132899.nic	chr8	-	7708	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	306	junction_10	284.722571476751	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCTGAAACTTCTTG	NA	False	NA	-18	True	AATATA	-13	NA	96534092	96446783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459698_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
transcript_13290.known	chr10	+	3732	14	FSM	ENSMUSG00000005897.15	ENSMUST00000105290.9	3732	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTTCTGTATCCTGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	93983884	94033073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_93983965_93992768_93992842_93998111_93998307_93999590_93999670_94001279_94001460_94003271_94003420_94003499_94003591_94006910_94007096_94007839_94008000_94017355_94017478_94024010_94024151_94026480_94026619_94028696_94028803_94031038
transcript_132903.known	chr8	-	8390	49	FSM	ENSMUSG00000036550.17	ENSMUST00000098473.11	8390	49	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_30	244.612610932232	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGAGCCACCATGTGG	NA	False	NA	NA	False	NA	NA	NA	96534090	96446078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
transcript_132904.known	chr8	-	8364	49	FSM	ENSMUSG00000036550.17	ENSMUST00000211887.2	8364	49	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_46	316.132422148272	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGATGGTTGTGAGCCAC	NA	False	NA	NA	False	NA	NA	NA	96534092	96446085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501351_96501906_96502015_96515257_96515533_96533960
transcript_132921.nic	chr8	-	3962	26	ISM	ENSMUSG00000036550.17	ENSMUST00000213006.2	7479	48	-101	25434	-33	1528	5prime_fragment	FALSE	canonical	3	674	junction_7	145.121543541957	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATCTTACACACAGTGAG	NA	False	NA	NA	False	AATAAA	-1	NA	96534125	96472217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
transcript_132923.nic	chr8	-	3938	26	ISM	ENSMUSG00000036550.17	ENSMUST00000068452.10	8152	48	-107	26132	-24	1528	5prime_fragment	FALSE	canonical	3	469	junction_7	177.115663903563	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATCTTACACACAGTGAG	NA	False	NA	NA	False	AATAAA	-1	NA	96534116	96472217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
transcript_132929.nic	chr8	-	3606	24	ISM	ENSMUSG00000036550.17	ENSMUST00000213006.2	7479	48	-88	28164	-20	-1202	5prime_fragment	FALSE	canonical	3	674	junction_5	151.175194752666	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCAAGAGAAAATTGCTT	NA	False	NA	NA	False	NA	NA	NA	96534112	96474947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
transcript_132930.nic	chr8	-	3605	24	ISM	ENSMUSG00000036550.17	ENSMUST00000068452.10	8152	48	-117	28862	-34	-1202	5prime_fragment	FALSE	canonical	3	469	junction_5	184.483051306297	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCAAGAGAAAATTGCTT	NA	False	NA	NA	False	NA	NA	NA	96534126	96474947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
transcript_132938.nic	chr8	-	3460	20	ISM	ENSMUSG00000036550.17	ENSMUST00000068452.10	8152	48	-723	33642	-640	1866	5prime_fragment	FALSE	canonical	3	469	junction_1	193.626121151677	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATGATGAAGCAAACAGT	NA	False	NA	NA	False	AGTAAA	-5	NA	96534732	96479727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_96479779_96481607_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
transcript_13294.known	chr10	+	566	4	FSM	ENSMUSG00000020022.18	ENSMUST00000179990.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	3293	junction_3	309.018877524767	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCTTGTGCGTTCA	NA	False	NA	13	True	ATTAAA	-13	NA	94034865	94056810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
transcript_13295.nnic	chr10	+	474	3	NIC	ENSMUSG00000020022.18	novel	1110	4	NA	NA	5	1	combination_of_known_splicesites	FALSE	canonical	3	40	junction_2	1952.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGTCTTGTGCGTTCAC	NA	False	NA	14	True	ATTAAA	-14	NA	94034870	94056811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_94034993_94035811_94035895_94056542
transcript_132950.known	chr8	+	2803	4	FSM	ENSMUSG00000074136.10	ENSMUST00000145562.8	2803	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAAACTATCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	96533457	96548356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96535809_96536858_96536926_96542995_96543075_96548050
transcript_132951.known	chr8	+	490	3	FSM	ENSMUSG00000074136.10	ENSMUST00000132616.2	490	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGACATCAACTATTCA	NA	False	NA	NA	False	NA	NA	NA	96535660	96548325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96535809_96536858_96536926_96548050
transcript_132953.known	chr8	-	338	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212289.2	338	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	187	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAATAGTACTGGTATG	NA	False	NA	-4	True	TTTAAA	-1	NA	96544306	96535179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96535388_96539051_96539129_96544253
transcript_132956.known	chr8	-	2381	1	FSM	ENSMUSG00000036550.17	ENSMUST00000212340.2	2381	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATAAT	NA	False	NA	NA	False	TTTAAA	-15	NA	96465164	96462783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96462800_96465200
transcript_132957.known	chr8	+	789	1	FSM	ENSMUSG00000061104.6	ENSMUST00000074053.6	789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	421	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TATAAA	-31	NA	96551973	96552762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_96552000_96552800
transcript_132959.known	chr8	-	3315	12	FSM	ENSMUSG00000036534.7	ENSMUST00000212270.2	3315	12	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_11	48.4964001390441	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTGTCTCCTTTATC	NA	False	NA	-4	True	AATAAA	-15	NA	96580167	96562551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
transcript_13296.known	chr10	+	5530	4	FSM	ENSMUSG00000020023.19	ENSMUST00000065060.12	5530	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTCAGAGCCCATCTC	NA	False	NA	10	True	AATAAA	-25	NA	94350718	94426818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_94350967_94414284_94415202_94418135_94418272_94422589
transcript_13298.known	chr10	-	6566	3	FSM	ENSMUSG00000097164.3	ENSMUST00000181906.3	6566	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTATTAGTGTATGTATT	NA	False	NA	NA	False	NA	NA	NA	94524438	94506886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_94512992_94514192_94514310_94524094
transcript_132981.nic	chr8	-	3771	11	NIC	ENSMUSG00000036534.7	novel	3333	12	NA	NA	2	0	intron_retention	FALSE	canonical	3	212	junction_10	48.716013794234	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96580165	96562547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_96564300_96567041_96567097_96568149_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
transcript_13299.known	chr10	+	3639	16	FSM	ENSMUSG00000020024.8	ENSMUST00000020212.6	3639	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	58.1305045183297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGTCCACATTTGTTAC	9504	False	NA	NA	False	ATTAAA	-13	NA	94524515	94626715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624508_94624699_94625565
transcript_133.known	SIRV5	+	2474	18	FSM	SIRV5A	SIRV510	2474	18	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_17	2924.81329602575	1887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1028	11867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
transcript_133000.known	chr8	-	2530	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	1740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	-4	True	AATAAA	-17	NA	96615175	96590761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
transcript_133006.known	chr8	-	2057	1	FSM	ENSMUSG00000031672.9	ENSMUST00000212861.2	2057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	96615020	96612963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_96613000_96615000
transcript_133007.known	chr8	+	1545	1	FSM	ENSMUSG00000071041.5	ENSMUST00000120826.2	1545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGATCCAGTATATGCC	NA	False	NA	NA	False	NA	NA	NA	100757189	100758734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_100757200_100758700
transcript_133012.known	chr8	-	2406	10	FSM	ENSMUSG00000035824.8	ENSMUST00000050211.7	2406	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	11.1055541659718	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATTCATTCATTCAT	NA	False	NA	6	True	AATAAA	-30	NA	104975190	104953316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104963403_104963478_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
transcript_133017.known	chr8	-	2312	9	FSM	ENSMUSG00000035824.8	ENSMUST00000211995.2	2312	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	19.1012924955355	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATGTAAATTCATTTTCA	NA	False	NA	-7	True	AATAAA	-17	NA	104975183	104953329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
transcript_133018.known	chr8	-	756	8	FSM	ENSMUSG00000035824.8	ENSMUST00000212209.2	756	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	28.0021865035499	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCCAGGTTAGCTGCTA	NA	False	NA	NA	False	NA	NA	NA	104975180	104954844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104965375_104965466_104967747_104967802_104970016_104970092_104975032
transcript_133020.known	chr8	+	750	5	FSM	ENSMUSG00000054400.17	ENSMUST00000212410.2	750	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	127.002706664071	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4823	False	NA	10	True	ATTAAA	-22	NA	104977523	104990079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104988799_104988914_104989902
transcript_133021.known	chr8	+	667	4	FSM	ENSMUSG00000054400.17	ENSMUST00000034342.13	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_3	21.1397466609439	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4792	False	NA	10	True	ATTAAA	-22	NA	104977492	104990079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104989902
transcript_133023.known	chr8	+	525	3	FSM	ENSMUSG00000054400.17	ENSMUST00000211809.2	525	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	140	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATATTTTCTGCAGATCT	4834	False	NA	6	True	ATTAAA	-18	NA	104977534	104990075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_104977728_104983916_104984076_104989902
transcript_133024.known	chr8	+	1304	2	FSM	ENSMUSG00000054400.17	ENSMUST00000212433.2	1304	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAAACACAGCTTAATT	4813	False	NA	NA	False	NA	NA	NA	104977513	104985006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_104977728_104983916
transcript_133026.known	chr8	+	1804	3	FSM	ENSMUSG00000054400.17	ENSMUST00000098464.6	1804	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	141	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAAAAAACCCA	4861	False	NA	NA	False	NA	NA	NA	104977561	104991570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_104977728_104983916_104984076_104990091
transcript_133028.known	chr8	+	1616	5	FSM	ENSMUSG00000031875.8	ENSMUST00000034343.5	1616	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	6.68954408012983	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGAGTGCGCCTGACT	NA	False	NA	13	True	ATTAAA	-15	NA	105067225	105074304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
transcript_133030.known	chr8	-	7734	4	FSM	ENSMUSG00000096188.2	ENSMUST00000179802.2	7734	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	2.49443825784929	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTTTAGTCTTTTCTTTC	NA	False	NA	NA	False	AATAAA	-31	NA	105122439	105074822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_105081924_105082893_105082993_105084329_105084507_105122082
transcript_133031.known	chr8	-	4627	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTTTGGTGACTTTGTT	1768	False	NA	-1	True	AATAAA	-20	NA	105169679	105144311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
transcript_13304.nic	chr10	+	1905	11	ISM	ENSMUSG00000020024.8	ENSMUST00000020212.6	3639	16	-22	24360	-22	-23700	5prime_fragment	TRUE	canonical	3	151	junction_6	28.1149426462157	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGAAAATTCTGAACTGAA	9482	False	NA	NA	False	AAAAAG	-15	NA	94524493	94602355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303
transcript_133044.known	chr8	-	1808	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3333	False	NA	NA	False	AATAAA	-19	NA	105261269	105237659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
transcript_133048.known	chr8	-	1735	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3334	False	NA	NA	False	AATAAA	-19	NA	105261268	105237659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
transcript_133065.known	chr8	+	1943	7	FSM	ENSMUSG00000031883.14	ENSMUST00000159416.8	1943	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.687184270936277	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTCTCCCTGTGTGCCT	NA	False	NA	NA	False	AATAAA	-18	NA	105261331	105276975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105261856_105270041_105270240_105274318_105274438_105274817_105274914_105275016_105275080_105275568_105275725_105276188
transcript_133066.known	chr8	+	5692	2	FSM	ENSMUSG00000048371.9	ENSMUST00000059588.8	5692	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTCCTTTAGTTCGA	NA	False	NA	NA	False	AATAAA	-16	NA	105318082	105325658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105318228_105320111
transcript_133072.known	chr8	-	639	5	FSM	ENSMUSG00000031879.15	ENSMUST00000093234.5	639	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	369.363641957353	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAGTATGCCTTAGCG	NA	False	NA	-10	True	AATAAA	-18	NA	105368333	105366479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_105366719_105367151_105367198_105367599_105367721_105367942_105368023_105368180
transcript_133074.known	chr8	-	807	4	FSM	ENSMUSG00000031879.15	ENSMUST00000163140.2	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	52.8288641642889	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCCTTAGCGTCTCTCA	NA	False	NA	-3	True	AATAAA	-25	NA	105368331	105366472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942
transcript_133075.known	chr8	+	3408	12	FSM	ENSMUSG00000050097.7	ENSMUST00000059449.7	3408	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAAAATTCAGCAAGT	NA	False	NA	NA	False	AAAACA	-2	NA	105558203	105566725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105558380_105559211_105559423_105560473_105560601_105561245_105561380_105561455_105561715_105562478_105562578_105562839_105562981_105563110_105563192_105563402_105563548_105563900_105564039_105564402_105564476_105564901
transcript_133076.known	chr8	+	2883	6	FSM	ENSMUSG00000031885.15	ENSMUST00000052209.9	2883	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	43.0748186299142	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	3746	False	NA	82	True	ATTAAA	-22	NA	105897305	105944621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929180_105942535
transcript_133079.known	chr8	+	2891	6	FSM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_5	26.6578318698277	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	3761	False	NA	74	True	ATTAAA	-14	NA	105897320	105944613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
transcript_133086.nic	chr8	+	3017	16	NIC	ENSMUSG00000031889.10	novel	2916	16	NA	NA	-11	0	combination_of_known_junctions	TRUE	canonical	3	12	junction_12	66.0092922751537	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	ACTAAA	-2	NA	105951765	105979685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105975960_105976095_105976228_105976288_105977350_105977424_105978229
transcript_133088.known	chr8	+	2916	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_9	14.7126551724093	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	ACTAAA	-2	NA	105951776	105979685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
transcript_13309.nic	chr10	+	1042	5	ISM	ENSMUSG00000020024.8	ENSMUST00000220052.2	3910	7	-38	13988	-22	6932	5prime_fragment	FALSE	canonical	3	176	junction_2	19.0525588832576	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAATACAAGTCAGAGGTA	9482	False	NA	NA	False	NA	NA	NA	94524493	94564567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452
transcript_133097.known	chr8	+	2460	15	FSM	ENSMUSG00000031889.10	ENSMUST00000141957.8	2460	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	68.2304019854935	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACAGCCTCATCTTGTA	NA	False	NA	NA	False	NA	NA	NA	105951837	105979388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
transcript_13310.nic	chr10	+	882	4	ISM	ENSMUSG00000020024.8	ENSMUST00000220052.2	3910	7	-38	16999	-22	3921	5prime_fragment	FALSE	canonical	3	176	junction_2	16.9705627484771	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAGAAGCTCCAATGCG	9482	False	NA	NA	False	NA	NA	NA	94524493	94561556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508
transcript_133108.known	chr8	-	642	2	FSM	ENSMUSG00000069920.11	ENSMUST00000161745.3	642	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCGTGCAGGGGGCACTC	9963	False	NA	NA	False	NA	NA	NA	105981783	105980953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_105981475_105981662
transcript_133109.known	chr8	-	2516	1	FSM	ENSMUSG00000069920.11	ENSMUST00000136822.3	2516	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTTCTCTTCTCAATTC	9961	False	NA	NA	False	ATTAAA	-16	NA	105981785	105979269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_105979300_105981800
transcript_13311.nic	chr10	+	823	3	ISM	ENSMUSG00000020024.8	ENSMUST00000220352.2	1842	4	-86	2042	-22	-2042	5prime_fragment	FALSE	canonical	3	176	junction_2	18	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACTGCAGGTAAGAAAT	9482	False	NA	NA	False	NA	NA	NA	94524493	94555593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_94524909_94554713_94554982_94555453
transcript_133110.known	chr8	-	1689	5	FSM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	9.66953980290686	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGTGCACGCCTTTAAT	505	False	NA	NA	False	AAAACA	-43	NA	105991241	105984917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153_105987313_105991192
transcript_133119.known	chr8	+	1901	3	FSM	ENSMUSG00000033313.12	ENSMUST00000036221.12	1901	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGATCTCGAGTCAGCT	1530	False	NA	NA	False	AATAAA	-20	NA	105991279	105995958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105991393_105993326_105993798_105994641
transcript_133122.nnic	chr8	+	1620	3	NNC	ENSMUSG00000033313.12	novel	1901	3	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	1	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGATCTCGAGTCAGCT	1536	False	NA	NA	False	AATAAA	-20	NA	105991285	105995958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_105991393_105993601_105993798_105994641
transcript_133123.known	chr8	+	1739	13	FSM	ENSMUSG00000033249.11	ENSMUST00000036127.9	1739	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.759202798262025	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGTCTCTCTTTTTTA	6683	False	NA	NA	False	CATAAA	-18	NA	105996432	106002477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_105996629_105997178_105997288_105997400_105997529_105997619_105997745_105998005_105998082_105998216_105998282_105998737_105998841_105999091_105999217_105999337_105999566_106001277_106001384_106001479_106001546_106001674_106001745_106002135
transcript_133125.known	chr8	-	2497	14	FSM	ENSMUSG00000043251.7	ENSMUST00000057855.4	2497	14	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_13	7.19467258528611	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGAATCTATGTGTTG	NA	False	NA	-1	True	AATAAA	-15	NA	106022730	106016555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106021891_106022068_106022257_106022339_106022537
transcript_133126.nnic	chr8	-	2674	14	NNC	ENSMUSG00000043251.7	novel	2497	14	NA	NA	-134	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	8.32619023245219	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGAATCTATGTGTTG	NA	False	NA	-1	True	AATAAA	-15	NA	106022867	106016555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106021891_106022068_106022257_106022379_106022537
transcript_133129.known	chr8	-	2161	13	FSM	ENSMUSG00000043251.7	ENSMUST00000212777.2	2161	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_11	8.1594355741613	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGTCTGAATCTATGTGT	NA	False	NA	-3	True	AATAAA	-13	NA	106022572	106016557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106022257_106022339_106022537
transcript_133137.known	chr8	-	3552	8	FSM	ENSMUSG00000014837.16	ENSMUST00000171788.8	3552	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	10.3628063333269	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGTGGCTTCTGTCTA	NA	False	NA	-3	True	NA	NA	NA	106016160	106007041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015400_106015798_106016035
transcript_13314.known	chr10	+	1842	4	FSM	ENSMUSG00000020024.8	ENSMUST00000220352.2	1842	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	88.9044430835715	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAGAAAAGAAAAG	9568	False	NA	NA	False	CATAAA	-34	NA	94524579	94557635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_94524909_94554713_94554982_94555453_94555605_94556541
transcript_133141.known	chr8	-	3492	7	FSM	ENSMUSG00000014837.16	ENSMUST00000014981.8	3492	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	11.0302614051829	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGCTTCTGTCTAC	NA	False	NA	-2	True	NA	NA	NA	106016496	106007040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106016035
transcript_133142.known	chr8	+	3176	4	FSM	ENSMUSG00000014776.8	ENSMUST00000014920.8	3176	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	2.05480466765633	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTGTCAAGAGCGTCTG	NA	False	NA	NA	False	CATAAA	-23	NA	106002771	106008571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106003246_106005605_106005903_106006047_106006408_106006526
transcript_133146.known	chr8	+	1993	10	FSM	ENSMUSG00000014859.10	ENSMUST00000015003.10	1993	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	369.398142461925	930	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGATCTGGTTCTTTGG	NA	False	NA	21	True	AATAAA	-17	NA	106024294	106032002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106024508_106024912_106025023_106025166_106025329_106025627_106025672_106026689_106026752_106026950_106027249_106027884_106028098_106030816_106030865_106031064_106031110_106031204
transcript_133148.known	chr8	+	3189	20	FSM	ENSMUSG00000014791.11	ENSMUST00000109375.4	3189	20	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	6.90778195396653	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAATAAAACAAAAAC	NA	False	NA	NA	False	ATTAAA	-44	NA	106032240	106037392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106032462_106032598_106032640_106032746_106032820_106033009_106033061_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
transcript_13315.known	chr10	-	1115	3	FSM	ENSMUSG00000045867.11	ENSMUST00000217809.2	1115	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	28	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTCTTTCAATGAGAG	NA	False	NA	2	True	AATAAA	-22	NA	95159427	95011126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95011841_95158447_95158752_95159330
transcript_133152.nnic	chr8	+	2322	19	NIC	ENSMUSG00000014791.11	novel	3189	20	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	8.12403840463596	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTTAAATCAGCTC	NA	False	NA	6	True	AATAAA	-17	NA	106032192	106036609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_106032462_106032598_106032640_106032746_106032820_106033009_106033061_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
transcript_133153.known	chr8	+	2351	19	FSM	ENSMUSG00000014791.11	ENSMUST00000212033.2	2351	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	8.33425920782464	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTTAAATCAGCTC	NA	False	NA	6	True	AATAAA	-17	NA	106032244	106036609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106032462_106032598_106032640_106032746_106032820_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
transcript_133157.known	chr8	+	2303	18	FSM	ENSMUSG00000014791.11	ENSMUST00000212046.2	2303	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	9.55008650479853	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTTAAATCAGCTC	NA	False	NA	6	True	AATAAA	-17	NA	106032232	106036609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106032462_106032598_106032640_106033227_106033398_106033472_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
transcript_133159.nic	chr8	-	2301	7	NIC	ENSMUSG00000041679.10	novel	2304	7	NA	NA	-17	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	2.74873708374511	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTTCTCTGATGTTCT	6310	False	NA	NA	False	ATTAAA	-14	NA	106052927	106038972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_106039578_106039676_106039895_106040052_106040197_106040312_106040529_106041707_106042655_106049896_106049999_106052858
transcript_13316.known	chr10	-	1661	3	FSM	ENSMUSG00000045867.11	ENSMUST00000053594.7	1661	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	28.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	False	NA	NA	False	ATTAAA	-13	NA	95159970	95010607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95011841_95158447_95158752_95159846
transcript_133160.known	chr8	-	2304	7	FSM	ENSMUSG00000041679.10	ENSMUST00000210412.2	2304	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.73353657780945	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTTATGACTTTCTCTG	6346	False	NA	NA	False	ATTAAA	-7	NA	106052891	106038979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106039578_106039676_106039895_106040052_106040197_106040312_106040529_106041707_106042701_106049896_106049999_106052858
transcript_133162.known	chr8	-	3830	3	FSM	ENSMUSG00000041679.10	ENSMUST00000210801.2	3830	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGACTTTCTCTGATGTT	6331	False	NA	NA	False	ATTAAA	-12	NA	106052906	106038974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106042655_106049896_106049999_106052858
transcript_133165.known	chr8	-	3928	22	FSM	ENSMUSG00000014778.11	ENSMUST00000014922.5	3928	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.64789309989673	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGAGCCTTTCTCTTCTTT	NA	False	NA	-1	True	AATAAA	-19	NA	106074585	106055794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106056112_106056200_106056402_106056478_106056642_106056726_106056920_106057018_106057210_106057760_106057923_106058001_106058122_106058273_106058457_106058668_106058825_106059541_106060237_106061318_106061435_106063013_106063194_106063270_106063429_106063518_106063663_106063754_106063850_106063949_106064062_106064306_106064402_106064483_106064590_106064661_106064730_106065033_106065099_106065485_106065593_106074284
transcript_133166.known	chr8	+	785	6	FSM	ENSMUSG00000014856.13	ENSMUST00000015000.12	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	56.0556865982391	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	251	False	NA	18	True	AATAAA	-20	NA	106052985	106055689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
transcript_133167.known	chr8	+	801	6	FSM	ENSMUSG00000014856.13	ENSMUST00000153146.9	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	152.856010676715	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCCGTGTGGGTGATGA	259	False	NA	16	True	AATAAA	-18	NA	106052993	106055687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055117_106055239_106055325_106055403
transcript_133169.known	chr8	+	895	5	FSM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_2	13.1909059582729	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACGGCCGTGTGGGTGA	1	True	NA	13	True	AATAAA	-15	NA	106053019	106055684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055325_106055403
transcript_13317.nic	chr10	-	1694	3	NIC	ENSMUSG00000045867.11	novel	1661	3	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	2	18	junction_2	34	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	False	NA	NA	False	ATTAAA	-13	NA	95160019	95010607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_95011841_95158447_95158752_95159862
transcript_133172.known	chr8	+	3499	16	FSM	ENSMUSG00000014786.9	ENSMUST00000073149.7	3499	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	2.98589275687449	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGACTTAGTGTTGGC	NA	False	NA	NA	False	NA	NA	NA	106075474	106095375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106076205_106080054_106080358_106081775_106081940_106082102_106082182_106082478_106082657_106083162_106083384_106083602_106083806_106084025_106084116_106084212_106084284_106085005_106085136_106085723_106085813_106085958_106086086_106089894_106090066_106090568_106090639_106091313_106091449_106094637
transcript_133177.known	chr8	-	2979	16	FSM	ENSMUSG00000051648.14	ENSMUST00000167294.8	2979	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	1.01105005920687	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATGCCTAGATTTCTT	NA	False	NA	NA	False	NA	NA	NA	106140134	106109438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106109702_106111362_106111465_106111654_106111810_106111961_106112154_106113381_106114010_106114397_106114513_106114822_106114907_106115096_106115240_106115675_106115780_106116911_106117073_106118504_106118716_106120457_106120590_106121902_106122095_106122961_106123113_106134959_106135257_106140085
transcript_133184.known	chr8	+	2396	14	FSM	ENSMUSG00000054320.17	ENSMUST00000213547.2	2396	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.266469355010597	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTTCTATTGTCCCTC	1839	False	NA	NA	False	AAGAAA	-12	NA	106140253	106190709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106140343_106151888_106152017_106153389_106153583_106154358_106154456_106158156_106158246_106170365_106170494_106172839_106172889_106176018_106176460_106178638_106178932_106181825_106181992_106184058_106184208_106185027_106185152_106187649_106187765_106190374
transcript_133185.known	chr8	-	1127	4	FSM	ENSMUSG00000014846.13	ENSMUST00000014990.13	1127	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	3.55902608401044	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGACTGACTCAGTCTACA	NA	False	NA	0	True	AATAAA	-19	NA	106198158	106194124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106194657_106194787_106194942_106195071_106195266_106197911
transcript_133187.known	chr8	-	2056	14	FSM	ENSMUSG00000039199.7	ENSMUST00000212303.2	2056	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	3.75428748981921	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTGCGGACTTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	106223502	106199054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106199514_106199622_106199702_106199837_106199932_106200115_106200199_106202655_106202769_106203002_106203162_106203245_106203371_106203648_106203751_106205383_106205560_106210172_106210416_106210820_106211060_106212093_106212141_106214422_106214499_106223441
transcript_133193.known	chr8	-	1629	8	FSM	ENSMUSG00000013160.8	ENSMUST00000013304.8	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	38.5115938016444	526	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGTCTGTCTGCTCC	NA	False	NA	-10	True	AATAAA	-18	NA	106292679	106251096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
transcript_13320.nic	chr10	-	1175	3	NIC	ENSMUSG00000045867.11	novel	1115	3	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	2	18	junction_2	34	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTCTTTCAATGAGAG	NA	False	NA	2	True	AATAAA	-22	NA	95160019	95011126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_95011841_95158447_95158752_95159862
transcript_133202.known	chr8	+	4108	22	FSM	ENSMUSG00000038604.10	ENSMUST00000043531.10	4108	22	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_11	11.8587682955494	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTTCCTACATGGCTT	2642	False	NA	7	True	NA	NA	NA	106331886	106348851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106331983_106341030_106341158_106341272_106341426_106341574_106341654_106342059_106342084_106342175_106342230_106342344_106342498_106342610_106342675_106342759_106342804_106342889_106343016_106343509_106343659_106343733_106343864_106343947_106345358_106345445_106345568_106346419_106346553_106346810_106346947_106347046_106347209_106347481_106347641_106347745_106347943_106348025_106348110_106348202_106348294_106348436
transcript_133205.known	chr8	+	3782	12	FSM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_10	73.0190736997323	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106363210	106409554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
transcript_133206.nic	chr8	+	4012	12	NIC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	-222	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_10	67.2234463229697	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106362977	106409554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406705_106406892_106408066
transcript_133210.nic	chr8	+	2412	10	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	-342	5607	-331	-2252	5prime_fragment	FALSE	canonical	3	388	junction_3	36.6518488577501	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGCGATCTAAAAAAGAAG	NA	False	NA	31	True	AAAAAG	-4	NA	106362868	106403947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846
transcript_133216.nic	chr8	+	1104	3	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	-210	18534	-199	254	5prime_fragment	FALSE	canonical	3	416	junction_1	7.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAAACTTCGTTACACAG	NA	False	NA	NA	False	AAGAAA	-9	NA	106363000	106391020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_106363353_106370147_106370265_106390385
transcript_133217.nic	chr8	+	1214	3	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	-220	18434	-209	354	5prime_fragment	FALSE	canonical	3	416	junction_1	7.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGTAGTTGGTAATAT	NA	False	NA	NA	False	NA	NA	NA	106362990	106391120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_106363353_106370147_106370265_106390385
transcript_133218.nic	chr8	+	1139	3	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	-91	18380	-80	408	5prime_fragment	FALSE	canonical	3	416	junction_1	7.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAAGTGAGTTTATCTCT	NA	False	NA	NA	False	ATTAAA	-7	NA	106363119	106391174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_106363353_106370147_106370265_106390385
transcript_133219.known	chr8	+	528	3	FSM	ENSMUSG00000005698.16	ENSMUST00000128510.8	528	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	213	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGCTACTACTTCAGT	NA	False	NA	NA	False	NA	NA	NA	106363566	106390766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106363597_106370147_106370265_106390385
transcript_133221.known	chr8	-	880	1	FSM	ENSMUSG00000110686.2	ENSMUST00000212546.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGTTTTTATATGAGAAA	NA	False	NA	NA	False	NA	NA	NA	106312832	106311952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106312000_106312800
transcript_133222.known	chr8	-	332	2	FSM	ENSMUSG00000098120.2	ENSMUST00000182046.2	332	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGACCACCTCAGCCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	106364117	106350981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106351108_106363911
transcript_133224.known	chr8	+	4194	39	FSM	ENSMUSG00000050357.10	ENSMUST00000213019.2	4194	39	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_20	8.5824984578148	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTCTCCTCCTGCCGCA	NA	False	NA	NA	False	NA	NA	NA	106412905	106424775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106412946_106413191_106413284_106413377_106413429_106414000_106414064_106414184_106414310_106414415_106414508_106414701_106414773_106414889_106414964_106415096_106415173_106415255_106415345_106415426_106415522_106415595_106415683_106415767_106415881_106415975_106416054_106416183_106416261_106416355_106416461_106416630_106416701_106416814_106416897_106417009_106417107_106417188_106417247_106417378_106417552_106417714_106417878_106417958_106418058_106418932_106419062_106419148_106419263_106419434_106419596_106419669_106419758_106419887_106420029_106420156_106420224_106420645_106420882_106421656_106421758_106421839_106422201_106422283_106422407_106423492_106423530_106423655_106423728_106423848_106424071_106424192_106424274_106424499_106424578_106424662
transcript_133226.nic	chr8	+	4522	38	NIC	ENSMUSG00000050357.10	novel	4194	39	NA	NA	-365	0	combination_of_known_junctions	TRUE	canonical	3	15	junction_36	9.80481538199191	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGAAACAGCGTGGAATA	NA	False	NA	NA	False	ATTAAA	-7	NA	106412540	106424819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_106412946_106413191_106413284_106413377_106413429_106414000_106414064_106414184_106414310_106414415_106414508_106414701_106414773_106414889_106414964_106415096_106415173_106415255_106415345_106415426_106415522_106415595_106415683_106415767_106415881_106415975_106416054_106416183_106416261_106416355_106416461_106416630_106416701_106416814_106416897_106417009_106417107_106417188_106417247_106417378_106417552_106417714_106417878_106417958_106418058_106418932_106419062_106419148_106419263_106419434_106419596_106419669_106419758_106419887_106420029_106420156_106420224_106420645_106420882_106421656_106421758_106421839_106422201_106422283_106422407_106423492_106423530_106423655_106423728_106423848_106424071_106424499_106424578_106424662
transcript_13323.known	chr10	-	679	3	FSM	ENSMUSG00000045867.11	ENSMUST00000218651.2	679	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATGGTGGCATTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	95159995	95146844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95147087_95158447_95158752_95159862
transcript_133238.known	chr8	-	3154	11	FSM	ENSMUSG00000038000.11	ENSMUST00000042608.8	3154	11	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_7	13.7637204272682	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAATGTTATCCGGGTGA	NA	False	NA	NA	False	AATAAA	-12	NA	106427716	106423050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
transcript_133243.nic	chr8	-	1366	10	NIC	ENSMUSG00000038000.11	novel	3154	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_8	60.9681155286196	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427717	106424789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106427035_106427334_106427472_106427551
transcript_133252.nic	chr8	-	1315	10	NIC	ENSMUSG00000038000.11	novel	3154	11	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_4	63.9878460681749	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427768	106424789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
transcript_133256.known	chr8	-	1182	9	FSM	ENSMUSG00000038000.11	ENSMUST00000212642.2	1182	9	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	85.2304779700314	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427685	106424789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426492_106426528_106426635_106426681_106426913_106427035_106427334_106427472_106427551
transcript_133267.known	chr8	+	678	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTGAGAGTACAGGGC	NA	False	NA	NA	False	NA	NA	NA	106427779	106429555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106427919_106428805_106429029_106429239
transcript_133268.nic	chr8	+	1264	3	NIC	ENSMUSG00000005699.17	novel	1273	3	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427760	106430125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_106427919_106428805_106429029_106429242
transcript_133269.known	chr8	+	1273	3	FSM	ENSMUSG00000005699.17	ENSMUST00000098444.9	1273	3	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	3	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427785	106430125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106427950_106428805_106429029_106429239
transcript_133270.known	chr8	+	1234	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212352.2	1234	3	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	6.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGATGTGGTCCTTCTGT	NA	False	NA	8	True	ATTAAA	-14	NA	106427818	106430122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106427950_106428805_106429029_106429242
transcript_133271.known	chr8	+	1265	3	FSM	ENSMUSG00000005699.17	ENSMUST00000093195.7	1265	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGTGGTCCTTCTGTGT	NA	False	NA	10	True	ATTAAA	-16	NA	106428278	106430124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106428436_106428805_106429029_106429239
transcript_133272.known	chr8	+	1261	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212430.2	1261	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	9	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106428280	106430125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106428436_106428805_106429029_106429242
transcript_133275.known	chr8	+	310	1	FSM	ENSMUSG00000005699.17	ENSMUST00000212972.2	310	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCCTTCGGATTGGTC	NA	False	NA	NA	False	AATAAA	-14	NA	106427782	106428092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106427800_106428100
transcript_133277.nnic	chr8	-	1393	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_7	49.3529562003563	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434803	106430283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434675
transcript_133279.nnic	chr8	-	1341	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_7	45.9436211734623	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434864	106430283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
transcript_133285.known	chr8	-	1275	7	FSM	ENSMUSG00000013155.11	ENSMUST00000013299.11	1275	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	11.5854314646552	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434565	106430283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
transcript_133286.known	chr8	-	1568	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212716.2	1568	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	9.8508882848198	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434777	106430282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180
transcript_133287.known	chr8	-	951	4	FSM	ENSMUSG00000013150.16	ENSMUST00000155038.3	951	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	11.1455023315337	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGACGAGCTTATGGGG	NA	False	NA	NA	False	NA	NA	NA	106485262	106444048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106444283_106449480_106449677_106454619_106454964_106485085
transcript_133289.known	chr8	-	4352	3	FSM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACTTGAAAAAAGGTCTT	NA	False	NA	NA	False	NA	NA	NA	106485296	106440485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106444283_106454619_106454964_106485085
transcript_133293.known	chr8	-	5308	14	FSM	ENSMUSG00000037415.8	ENSMUST00000239468.2	5308	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	8.84180495107755	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCTGTTGTTCAGAAT	NA	False	NA	-1	True	ATTAAA	-19	NA	106553982	106494939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106498350_106498726_106498839_106499080_106499227_106499669_106499792_106500540_106500746_106500918_106501068_106501166_106501276_106502591_106502705_106506458_106506644_106508911_106508935_106513258_106513427_106532163_106532217_106552709_106552822_106553581
transcript_133299.nic	chr8	-	1758	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	63.6958163837578	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTAGCGATATTGTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	106578661	106571304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576402_106578502
transcript_1333.nic	chr1	+	4041	28	ISM	ENSMUSG00000041763.15	ENSMUST00000188313.7	4631	29	-326	1581	42	-917	5prime_fragment	FALSE	canonical	3	286	junction_23	38.1887593973314	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAAAAATTGTATTCAAG	2986	False	NA	NA	False	AAGAAA	-17	NA	43972848	44040579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478
transcript_133305.known	chr8	-	1814	13	FSM	ENSMUSG00000036672.6	ENSMUST00000040776.6	1814	13	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	25.0593739391514	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578686	106571308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
transcript_133306.known	chr8	+	1819	1	FSM	ENSMUSG00000036442.9	ENSMUST00000040445.9	1819	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	441	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGGTTTCGACTTTTTT	NA	False	NA	12	True	ATTAAA	-19	NA	106581763	106583582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106581800_106583600
transcript_133309.known	chr8	+	948	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACAGTTTAAATTGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	106587211	106605962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
transcript_133311.known	chr8	+	645	5	FSM	ENSMUSG00000008450.9	ENSMUST00000212042.2	645	5	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	1472.58692442925	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGATGCTCCAAATATCAT	NA	False	NA	NA	False	NA	NA	NA	106587614	106605611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106587789_106602165_106602291_106602985_106603058_106603141_106603241_106605436
transcript_133313.known	chr8	+	518	4	FSM	ENSMUSG00000008450.9	ENSMUST00000212398.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	479.48606746066	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTTACCTTCCCCGCTC	NA	False	NA	NA	False	NA	NA	NA	106587296	106603421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141
transcript_133319.known	chr8	+	4780	29	FSM	ENSMUSG00000036270.17	ENSMUST00000040254.16	4780	29	0	0	0	0	multi-exon	TRUE	canonical	3	268	junction_16	54.5128121057194	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCTTTGATGTGACTA	3256	False	NA	31	True	AATAAA	-23	NA	106607512	106619857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
transcript_133324.known	chr8	+	4645	29	FSM	ENSMUSG00000036270.17	ENSMUST00000119261.8	4645	29	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_18	83.7903344847198	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTGATTTTAGTT	3326	False	NA	14	True	AATAAA	-6	NA	106607582	106619840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616304_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
transcript_133359.known	chr8	+	3255	3	FSM	ENSMUSG00000048310.9	ENSMUST00000049699.9	3255	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	10	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAAGGCTGCCATTTTTT	NA	False	NA	-13	True	AATAAA	-17	NA	106627072	106658410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106627173_106639251_106640279_106656282
transcript_13336.nic	chr10	-	1900	6	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	-2	-118	combination_of_known_junctions	FALSE	canonical	2	11	junction_3	212.826126215744	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTAAAATTGGATTTCGG	NA	False	NA	NA	False	NA	NA	NA	95252721	95223646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95248520_95248973_95250692_95251054_95252479
transcript_133360.nnic	chr8	+	2511	3	NNC	ENSMUSG00000048310.9	novel	3255	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	32	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAAGGCTGCCATTTTTT	NA	False	NA	-13	True	AATAAA	-17	NA	106627058	106658410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_106627173_106640009_106640279_106656282
transcript_133363.known	chr8	-	3811	24	FSM	ENSMUSG00000017765.18	ENSMUST00000034370.17	3811	24	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_23	38.1304595706627	285	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTGCTCCGGCTC	NA	False	NA	-4	True	AATAAA	-18	NA	106692729	106670224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106670806_106670906_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672363_106672476_106672673_106673322_106673492_106673688_106673794_106674124_106674245_106674484_106674584_106675769_106675889_106676285_106676461_106676828_106676887_106677136_106677236_106677327_106677493_106678053_106678269_106678411_106678654_106680439_106680571_106682058_106682114_106682212_106682360_106685989_106686122_106687307_106687403_106692550
transcript_133376.known	chr8	-	1311	8	FSM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	110.839468399582	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTAAACAGAAGGCTGTG	NA	False	NA	-11	True	AATAAA	-16	NA	106665076	106662370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310_106664399_106664586
transcript_133377.known	chr8	-	554	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212686.2	554	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	46.7784375778224	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACAGAAGGCTGTGTCT	NA	False	NA	-8	True	AATAAA	-19	NA	106663670	106662367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497
transcript_133379.known	chr8	-	646	3	FSM	ENSMUSG00000031897.10	ENSMUST00000212938.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	9	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACACTTAAACAGAAGG	NA	False	NA	-16	True	AATAAA	-11	NA	106663659	106662375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106662538_106662627_106662780_106663327
transcript_133380.known	chr8	-	426	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212332.2	426	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	117.139043685509	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACAGAAGGCTGTGTCTT	NA	False	NA	-7	True	AATAAA	-20	NA	106663657	106662366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663613
transcript_133385.known	chr8	+	1860	16	FSM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	22.4047613987146	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACCTGCTTCAACCT	NA	False	NA	12	True	AATAAA	-12	NA	106738138	106780451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
transcript_133388.known	chr8	+	1837	15	FSM	ENSMUSG00000031901.13	ENSMUST00000119736.8	1837	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_4	52.5452186216786	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCTGACATAATTTTTC	NA	False	NA	33	True	AATAAA	-33	NA	106738138	106780472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
transcript_133391.known	chr8	-	1698	10	FSM	ENSMUSG00000031898.10	ENSMUST00000034371.9	1698	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	8.79955105476592	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGAGCCCTCGTCCTC	NA	False	NA	1	True	AATAAA	-21	NA	106706061	106700144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705471_106705645
transcript_133392.nnic	chr8	-	1818	10	NNC	ENSMUSG00000031898.10	novel	1698	10	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	15.663120165961	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGAGCCCTCGTCCTC	NA	False	NA	1	True	AATAAA	-21	NA	106706094	106700144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705558_106705645
transcript_133394.known	chr8	+	777	4	FSM	ENSMUSG00000031901.13	ENSMUST00000141374.2	777	4	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	8.05536398239638	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	106738153	106757515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983
transcript_133395.known	chr8	-	2262	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	137	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTATGTCATGATTTCTTT	NA	False	NA	-9	True	AATAAA	-17	NA	106738514	106736252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106736300_106738500
transcript_133399.known	chr8	-	3536	15	FSM	ENSMUSG00000084128.11	ENSMUST00000115979.9	3536	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_13	4.96929346597888	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGCTCTACATGTTAA	NA	False	NA	NA	False	TATAAA	-19	NA	106863606	106856950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106858216_106858295_106858462_106858737_106858925_106859036_106859236_106859326_106859540_106859640_106859943_106860082_106860126_106860204_106860338_106860410_106860522_106860591_106860647_106860865_106860965_106861241_106861357_106861454_106861569_106862988_106863118_106863201
transcript_13341.nnic	chr10	-	1469	5	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	-23	-118	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	175.888281303787	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTAAAATTGGATTTCGG	NA	False	NA	NA	False	NA	NA	NA	95252742	95223646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95250692_95251054_95252479
transcript_133410.known	chr8	+	5984	10	FSM	ENSMUSG00000031902.11	ENSMUST00000109308.3	5984	10	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_8	15.9706520967386	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAAATCTGAGTTTTT	NA	False	NA	9	True	AATAAA	-20	NA	106786264	106857169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106786626_106805235_106806374_106810442_106810606_106818663_106818864_106822795_106822969_106825703_106825845_106827565_106827622_106830656_106830784_106834756_106835762_106854549
transcript_133415.known	chr8	+	2207	4	FSM	ENSMUSG00000031902.11	ENSMUST00000212577.2	2207	4	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	3.77123616632825	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106786264	106819208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106786626_106805235_106806374_106810442_106810606_106818663
transcript_133417.known	chr8	+	984	2	FSM	ENSMUSG00000086390.8	ENSMUST00000145343.2	984	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCCTCCCGATTCTCGGGA	NA	False	NA	NA	False	NA	NA	NA	106863696	106865157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106863983_106864459
transcript_133418.known	chr8	+	2706	6	FSM	ENSMUSG00000031903.8	ENSMUST00000034377.8	2706	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	8.49941174435031	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTTGTCCTGCTCTGA	6197	False	NA	14	True	AATAAA	-20	NA	106877030	106891347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887715_106887941_106889456
transcript_133419.known	chr8	+	2578	6	FSM	ENSMUSG00000031903.8	ENSMUST00000212963.2	2578	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	47.4088599314516	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGTGCCTTGTCCTGCTC	6197	False	NA	11	True	AATAAA	-17	NA	106877030	106891344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887840_106887941_106889456
transcript_133420.known	chr8	+	2672	11	FSM	ENSMUSG00000031904.6	ENSMUST00000212377.2	2672	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	147.708801362681	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATACAGATAAGTCACAT	1850	False	NA	NA	False	NA	NA	NA	106895506	106924477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106895587_106905733_106905920_106906118_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_133429.known	chr8	+	3750	10	FSM	ENSMUSG00000031904.6	ENSMUST00000034378.5	3750	10	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_7	138.200159010825	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACAGTTGCCATTGGTTCT	1832	False	NA	4	True	AATAAA	-18	NA	106895488	106925338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_133433.nic	chr8	+	3194	10	NIC	ENSMUSG00000031904.6	novel	3750	10	NA	NA	26	178	intron_retention	FALSE	canonical	3	12	junction_1	155.192671966491	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGGAATGTTCTACA	1887	False	NA	13	True	AATAAA	-28	NA	106895543	106924655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_106895769_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_133438.known	chr8	+	3200	9	FSM	ENSMUSG00000031904.6	ENSMUST00000213020.2	3200	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_6	138.341911129636	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAAAACCTCACTACTC	1850	False	NA	NA	False	NA	NA	NA	106895506	106924139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_133442.known	chr8	-	1246	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCTGGTGGTTTTTCTG	NA	False	NA	-6	True	NA	NA	NA	106937565	106927348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
transcript_133444.nic	chr8	-	1652	4	ISM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	-40	-279	-38	279	intron_retention	FALSE	canonical	3	127	junction_1	3.29983164553722	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCAGTTCTTTTTTAGA	NA	False	NA	-2	True	AATAAA	-22	NA	106937605	106927069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996
transcript_133446.nic	chr8	-	1373	4	ISM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	-40	0	-38	0	intron_retention	FALSE	canonical	3	127	junction_1	3.29983164553722	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCTGGTGGTTTTTCTG	NA	False	NA	-6	True	NA	NA	NA	106937605	106927348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996
transcript_133453.known	chr8	-	1475	1	FSM	ENSMUSG00000033106.7	ENSMUST00000212587.2	1475	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	106937565	106936090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_106936100_106937600
transcript_133471.known	chr8	+	3472	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	0	0	0	0	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	4243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTTTGTCTTTTAAAAC	1819	False	NA	NA	False	ATTAAA	-7	NA	106937567	106979426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
transcript_13348.known	chr10	-	605	3	FSM	ENSMUSG00000020027.19	ENSMUST00000150432.8	605	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	233.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGAGATAGTTCGCATT	NA	False	NA	NA	False	ATTAAA	-25	NA	95251346	95248899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95248973_95250692_95251054_95251175
transcript_13349.known	chr10	-	2222	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_2	23.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGAGTTGTAGGTGTA	NA	False	NA	2	True	AATAAA	-32	NA	95252719	95247351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95248973_95250692_95251054_95252479
transcript_13350.known	chr10	-	497	3	FSM	ENSMUSG00000020027.19	ENSMUST00000135822.8	497	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTAACTATATCCGTTAA	NA	False	NA	NA	False	NA	NA	NA	95253042	95248871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95248973_95250692_95251054_95253007
transcript_133507.known	chr8	+	1094	6	FSM	ENSMUSG00000060098.12	ENSMUST00000109297.8	1094	6	0	0	0	0	multi-exon	FALSE	canonical	3	1054	junction_4	40.5186376868719	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCATAGAAACTCATGTGC	1906	False	NA	NA	False	NA	NA	NA	106937654	106962021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479
transcript_133513.known	chr8	+	3447	4	FSM	ENSMUSG00000031907.10	ENSMUST00000213045.2	3447	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	7.48331477354788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTAACTCAGTTGCTTTT	NA	False	NA	NA	False	AATACA	-18	NA	107141958	107153230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107142403_107145702_107145830_107146052_107146243_107150544
transcript_133514.known	chr8	+	2632	4	FSM	ENSMUSG00000031907.10	ENSMUST00000034382.8	2632	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	5.09901951359278	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTATGGCCAAGGCTCAT	NA	False	NA	NA	False	AAGAAA	-13	NA	107141970	107152521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107142403_107145702_107145830_107146146_107146243_107150544
transcript_133517.known	chr8	+	4384	16	FSM	ENSMUSG00000061048.9	ENSMUST00000080797.8	4384	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	6.02218122167265	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTATATGTAAGTACAC	NA	False	NA	NA	False	AATACA	-20	NA	107237522	107283929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107237639_107237855_107237974_107262039_107262114_107263192_107263319_107263447_107263604_107263705_107263851_107265625_107265802_107266426_107266556_107267938_107268125_107270282_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
transcript_133518.nnic	chr8	+	3128	16	NNC	ENSMUSG00000061048.9	novel	4384	16	NA	NA	-75	-1178	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	13.6502340232279	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCAGAGGTGCTAGGGGA	NA	False	NA	1	True	ATTAAA	-15	NA	107237447	107282751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_107237639_107237855_107237974_107262039_107262114_107263192_107263319_107263447_107263604_107263705_107263851_107265625_107265802_107266426_107266556_107267938_107268125_107270435_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
transcript_133521.known	chr8	-	342	1	FSM	ENSMUSG00000060019.7	ENSMUST00000073722.7	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	211	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGCTTTTGTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	107299982	107299640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107299600_107300000
transcript_133524.known	chr8	+	3203	17	FSM	ENSMUSG00000000303.13	ENSMUST00000167688.2	3203	17	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_16	254.482563253359	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTAAAGAATGGTTGTT	5077	False	NA	NA	False	NA	NA	NA	107330010	107395994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395517_107395831
transcript_133530.known	chr8	+	4430	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	0	0	0	0	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	1528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5049	False	NA	26	True	ATTAAA	-18	NA	107329982	107396878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
transcript_133560.known	chr8	+	4409	18	FSM	ENSMUSG00000041949.7	ENSMUST00000048359.5	4409	18	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	14.9330686662985	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	1113	False	NA	NA	False	NA	NA	NA	107409699	107578071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107409888_107415283_107415925_107419198_107419316_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107443240_107443354_107444601_107444779_107447285_107447416_107451725_107451918_107462317_107462453_107468644_107469104_107473925_107473984_107508325_107508467_107533672_107533825_107545087_107545202_107576810
transcript_133569.known	chr8	+	4005	14	FSM	ENSMUSG00000041949.7	ENSMUST00000212764.2	4005	14	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	16.0594310435889	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAGAAAAA	1160	False	NA	NA	False	GGGGCT	-31	NA	107409746	107475294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107409888_107415283_107415925_107419198_107419316_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107443240_107443354_107444601_107444779_107447285_107447416_107451725_107451918_107462317_107462453_107468644_107469104_107473925
transcript_13357.known	chr10	-	623	3	FSM	ENSMUSG00000020027.19	ENSMUST00000129942.2	623	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	245	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGCTCCAGAAGGAACTT	NA	False	NA	NA	False	ATTAAA	-1	NA	95252074	95248923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95248973_95250692_95251054_95251861
transcript_133570.known	chr8	+	2722	8	FSM	ENSMUSG00000041949.7	ENSMUST00000211979.2	2722	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	37.9844221560709	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAGCACTCAACTCTCTG	1191	False	NA	NA	False	ATTAAA	-16	NA	107409777	107432894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107409888_107415283_107415925_107419198_107419316_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107431571
transcript_133572.known	chr8	+	4150	4	FSM	ENSMUSG00000031910.15	ENSMUST00000176144.8	4150	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAACATTAAGGGTGGGA	NA	False	NA	NA	False	ATTAAA	-16	NA	107597467	107607829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107597584_107600539_107601179_107603523_107603626_107604536
transcript_133574.known	chr8	-	2890	4	FSM	ENSMUSG00000046691.15	ENSMUST00000175940.2	2890	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	147.606082379947	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGCTGTCGCTCCATTT	NA	False	NA	-31	True	AATAAA	-13	NA	107619847	107610525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107613159_107613551_107613670_107613932_107613989_107619764
transcript_133576.known	chr8	-	694	4	FSM	ENSMUSG00000046691.15	ENSMUST00000176515.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	154.848312874245	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCTCCTTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	107620233	107612753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107613159_107613551_107613684_107613932_107613989_107620132
transcript_133578.known	chr8	-	369	3	FSM	ENSMUSG00000117748.2	ENSMUST00000176437.9	369	3	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	124	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGAACCCCGGATTTTC	NA	False	NA	NA	False	AAGAAA	-4	NA	107620223	107612936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107613159_107613932_107613989_107620132
transcript_133579.known	chr8	-	615	3	FSM	ENSMUSG00000046691.15	ENSMUST00000176090.2	615	3	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	168.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGACTTCTTTCCCAAG	NA	False	NA	NA	False	NA	NA	NA	107620147	107612676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107613159_107613551_107613670_107620132
transcript_133582.known	chr8	-	2730	2	FSM	ENSMUSG00000117748.2	ENSMUST00000169312.2	2730	2	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCGCTCCATTTTGTT	NA	False	NA	-27	True	AATAAA	-17	NA	107620225	107610521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107613159_107620132
transcript_133592.known	chr8	+	2232	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	0	0	0	0	multi-exon	TRUE	canonical	3	1046	junction_1	100.936996902771	1829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	12	True	AATAAA	-17	NA	107620282	107649720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
transcript_133593.known	chr8	+	3113	15	FSM	ENSMUSG00000041438.9	ENSMUST00000212718.2	3113	15	0	0	0	0	multi-exon	FALSE	canonical	3	1116	junction_3	94.3690378573526	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACTAGACATTTTAAATT	NA	False	NA	11	True	AATAAA	-16	NA	107621220	107649719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107645438_107648803_107648915_107649496
transcript_133599.known	chr8	+	9945	7	FSM	ENSMUSG00000041308.7	ENSMUST00000212524.2	9945	7	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	15.4209453522005	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTGTCTCTTGTGTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	107662381	107746346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107662954_107707757_107707972_107718027_107718239_107723697_107723841_107728141_107728339_107736412_107736598_107737923
transcript_133603.nnic	chr8	+	1565	7	NNC	ENSMUSG00000041308.7	novel	9945	7	NA	NA	2	-1722	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_2	45.3198509363048	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAACAACAAAGAAGCACAA	NA	False	NA	NA	False	AAGAAA	-7	NA	107662384	107738090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_107662954_107707757_107707972_107718148_107718239_107723697_107723841_107728141_107728339_107736412_107736598_107737923
transcript_133608.known	chr8	+	792	2	FSM	ENSMUSG00000041308.7	ENSMUST00000212298.2	792	2	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107662780	107708376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107662954_107707757
transcript_133612.known	chr8	+	2178	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTGGAGTCGTCTCAT	NA	False	NA	17	True	AATAAA	-17	NA	107757853	107772387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
transcript_133619.nnic	chr8	-	2957	6	NNC	ENSMUSG00000031916.18	novel	2954	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	49.4748420917136	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107783336	107772920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_107773904_107775437_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
transcript_133620.known	chr8	-	2954	6	FSM	ENSMUSG00000031916.18	ENSMUST00000034391.4	2954	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	47.5116827738189	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGCTTCTACTGGTAG	NA	False	NA	NA	False	NA	NA	NA	107783316	107772926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107773904_107775414_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
transcript_133629.known	chr8	-	4476	5	FSM	ENSMUSG00000031916.18	ENSMUST00000095517.12	4476	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	10.356157588604	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107783321	107772920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
transcript_133633.known	chr8	-	1306	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAAAAAAAAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	107775246	107773151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107773904_107774692
transcript_133634.nnic	chr8	+	1944	6	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	320.893377931051	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	19	True	ATTAAA	-20	NA	107783508	107787563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008_107785997_107787088
transcript_133635.known	chr8	+	3036	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	19	True	ATTAAA	-20	NA	107783508	107787563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
transcript_133641.known	chr8	-	871	4	FSM	ENSMUSG00000031919.7	ENSMUST00000034393.7	871	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTCTGCTGCTGATCA	NA	False	NA	NA	False	AATAAA	-20	NA	107792276	107788107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107788457_107790308_107790458_107790705_107790833_107792030
transcript_133646.known	chr8	-	2666	10	FSM	ENSMUSG00000031921.18	ENSMUST00000133925.8	2666	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	8.85688683705762	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTCTAGCTGGTTCTTG	NA	False	NA	0	True	ATTAAA	-17	NA	107823177	107796031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107797198_107798506_107798548_107799191_107799278_107803241_107803629_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
transcript_133647.known	chr8	-	2667	10	FSM	ENSMUSG00000031921.18	ENSMUST00000068421.13	2667	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	7.27247474309048	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCTCTAGCTGGTTCT	NA	False	NA	-2	True	ATTAAA	-15	NA	107823177	107796033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107797198_107798506_107798548_107799191_107799278_107803241_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
transcript_133659.known	chr8	-	2471	7	FSM	ENSMUSG00000031921.18	ENSMUST00000116425.3	2471	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	4.88762609953839	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGTCCTTGCGTGATA	NA	False	NA	1	True	NA	NA	NA	107823179	107802148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
transcript_133660.nic	chr8	-	2493	7	ISM	ENSMUSG00000031921.18	ENSMUST00000068388.15	1915	11	-60	5591	-27	-2	5prime_fragment	FALSE	canonical	3	17	junction_1	8.76387788342327	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACCTTGTCCTTGCGTGA	NA	False	NA	-1	True	NA	NA	NA	107823206	107802150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_107803629_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
transcript_133661.nic	chr8	-	1739	7	ISM	ENSMUSG00000031921.18	ENSMUST00000068388.15	1915	11	-60	6345	-27	46	5prime_fragment	FALSE	canonical	3	17	junction_1	8.76387788342327	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTGAGCACTTAGCTT	NA	False	NA	-4	True	NA	NA	NA	107823206	107802904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_107803629_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
transcript_133667.known	chr8	+	4316	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	0	0	0	0	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	1105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACGGTTGCTTTTTTTTTT	NA	False	NA	17	True	AATAAA	-28	NA	107877271	107914103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
transcript_133670.known	chr8	-	456	1	FSM	ENSMUSG00000057657.5	ENSMUST00000080443.8	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10462	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTCTGGGCCTTTGCT	NA	False	NA	-69	True	AAGAAA	-1	NA	107989880	107989424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_107989400_107989900
transcript_133674.known	chr8	-	1553	6	FSM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_5	9.8264947972306	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTGGCGCATGCCTTT	NA	False	NA	-2	True	AATAAA	-18	NA	108129838	108114856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_108115757_108117676_108117779_108118753_108118868_108119272_108119404_108119479_108119645_108129697
transcript_133676.known	chr8	-	1658	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	1367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTTTTTGTTTTATTT	NA	False	NA	-3	True	AATAAA	-14	NA	108151681	108139120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
transcript_133682.nic	chr8	-	2416	8	NIC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	-10	0	intron_retention	FALSE	canonical	3	448	junction_3	29.242825737997	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTTATTTGGG	NA	False	NA	0	True	AATAAA	-17	NA	108151693	108139117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_108139816_108142737_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
transcript_13369.known	chr10	-	874	2	FSM	ENSMUSG00000020027.19	ENSMUST00000134918.2	874	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCTGCTCAAGATCAAAT	NA	False	NA	NA	False	TTTAAA	-43	NA	95250689	95248281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95248973_95250506
transcript_13371.nnic	chr10	-	2246	3	NNC	ENSMUSG00000112261.2	novel	660	3	NA	NA	9	1626	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	7.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGGGGGTGCATATCTT	1562	False	NA	NA	False	NA	NA	NA	95297077	95279551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_95281620_95296475_95296557_95296980
transcript_133712.known	chr8	+	4314	24	FSM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_9	55.7196601685668	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGGTGTCAGTGTAGCT	NA	False	NA	11	True	AATAAA	-14	NA	108162996	108285227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
transcript_13372.known	chr10	-	660	3	FSM	ENSMUSG00000112261.2	ENSMUST00000219379.2	660	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	4.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGAGTCACTGAGTTCT	1553	False	NA	NA	False	NA	NA	NA	95297086	95281177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95281620_95296475_95296588_95296980
transcript_133728.known	chr8	+	2758	23	FSM	ENSMUSG00000031930.12	ENSMUST00000212205.2	2758	23	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	144.720334461373	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCTGTTGCAAAGCCAG	NA	False	NA	10	True	AATAAA	-21	NA	108163031	108283844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
transcript_13374.nnic	chr10	-	842	8	NNC	ENSMUSG00000062981.6	novel	677	6	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	2	39	junction_3	1840.73094399026	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	-8	True	AATAAA	-17	NA	95337853	95316666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_95316840_95326107_95326275_95326396_95326444_95326648_95326729_95329492_95329578_95332685_95332750_95336244_95336385_95337767
transcript_133747.known	chr8	+	1579	8	FSM	ENSMUSG00000031930.12	ENSMUST00000212906.2	1579	8	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_7	35.348988958783	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAGAAAAAAAATTAAAAGAA	NA	False	NA	NA	False	TATAAA	-7	NA	108163020	108245340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532
transcript_133751.known	chr8	+	2098	8	FSM	ENSMUSG00000031930.12	ENSMUST00000212993.2	2098	8	0	0	0	0	multi-exon	FALSE	canonical	3	617	junction_2	50.4570943212839	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTGTTGCAAAGCCAGA	NA	False	NA	11	True	AATAAA	-22	NA	108277968	108283845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
transcript_133752.known	chr8	-	449	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4319	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAACTTTTTATCGCT	NA	False	NA	NA	False	AATAAA	-37	NA	108166211	108165762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_108165800_108166200
transcript_133753.known	chr8	-	351	1	FSM	ENSMUSG00000059775.6	ENSMUST00000212102.2	351	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCGTTTTGTAAGGACA	NA	False	NA	NA	False	NA	NA	NA	108166196	108165845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_108165800_108166200
transcript_133754.known	chr8	-	1581	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	0	0	0	0	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTGTCCTAGTGGTT	NA	False	NA	-6	True	ATTAAA	-14	NA	108315096	108307012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
transcript_133764.known	chr8	-	860	1	FSM	ENSMUSG00000039067.6	ENSMUST00000213080.2	860	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108315090	108314230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_108314200_108315100
transcript_133765.known	chr8	+	16433	10	FSM	ENSMUSG00000038872.11	ENSMUST00000043896.10	16433	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.62466929133727	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGCAAAAGTCCTTGTCT	NA	False	NA	NA	False	ATTAAA	-7	NA	109441275	109688262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_109441963_109518833_109521602_109526826_109527324_109583353_109583586_109641153_109641262_109660163_109660298_109660440_109660642_109671733_109671837_109672948_109678403_109682013
transcript_133771.known	chr8	-	174	1	FSM	ENSMUSG00000110528.2	ENSMUST00000211890.2	174	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGAACCAGTATTTGGAAG	NA	False	NA	NA	False	AAAACA	-4	NA	110067496	110067322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110067300_110067500
transcript_133773.known	chr8	-	4463	27	FSM	ENSMUSG00000037993.9	ENSMUST00000042601.9	4463	27	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_24	17.2223966609053	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGCATTTTAAATCTCC	NA	False	NA	-2	True	AATAAA	-19	NA	110292493	110274642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110275116_110276405_110276528_110278194_110278291_110278699_110278826_110278988_110279124_110279221_110279378_110279721_110279877_110279976_110280186_110280779_110280893_110281275_110281384_110281544_110281662_110281751_110281863_110282271_110282413_110282651_110282838_110282988_110283176_110283505_110283644_110284829_110284943_110285275_110285384_110285550_110285713_110286169_110286326_110286717_110286795_110286969_110287089_110287199_110287348_110287931_110288040_110288580_110288769_110289075_110289416_110292122
transcript_133783.known	chr8	+	1890	4	FSM	ENSMUSG00000031723.9	ENSMUST00000034159.8	1890	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	19.3045763140937	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGTTGTCTGTCCATC	NA	False	NA	15	True	AATAAA	-24	NA	110292523	110300683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_110292696_110295521_110295730_110298002_110298155_110299325
transcript_133791.known	chr8	-	2039	9	FSM	ENSMUSG00000031730.19	ENSMUST00000123605.9	2039	9	0	0	0	0	multi-exon	FALSE	canonical	1	150	junction_2	108.396191699709	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	110335255	110320108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
transcript_133792.nic	chr8	-	1937	9	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	1	23	junction_8	169.433615318803	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	110335341	110320108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110335171
transcript_13380.known	chr10	-	661	6	FSM	ENSMUSG00000062981.6	ENSMUST00000218893.2	661	6	0	0	0	0	multi-exon	FALSE	canonical	3	2875	junction_5	503.887924046608	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAGTGTGTATTTCA	NA	False	NA	-11	True	AATAAA	-14	NA	95337802	95316669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
transcript_133809.known	chr8	-	1455	7	FSM	ENSMUSG00000031730.19	ENSMUST00000143900.8	1455	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	172.721998856222	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTAAATCCCATCCCTT	NA	False	NA	-9	True	AATAAA	-13	NA	110335255	110320378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110320764_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
transcript_133815.known	chr8	-	670	4	FSM	ENSMUSG00000031730.19	ENSMUST00000146064.8	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_3	63.378930954134	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGACCACACAAAG	NA	False	NA	NA	False	NA	NA	NA	110335052	110327949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110328138_110329934_110330135_110332839_110333053_110334983
transcript_133816.known	chr8	-	2454	3	FSM	ENSMUSG00000031730.19	ENSMUST00000131107.2	2454	3	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_2	77	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-45	NA	110335052	110327962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110330135_110332839_110333053_110334983
transcript_133822.known	chr8	-	2304	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	False	NA	-13	True	AATAAA	-20	NA	110419892	110397956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_133832.known	chr8	-	3633	9	FSM	ENSMUSG00000031729.7	ENSMUST00000212973.2	3633	9	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_2	54.85990680816	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCTAGTGTTGGTCAAA	NA	False	NA	-17	True	AATAAA	-16	NA	110419892	110397960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110399274_110402007_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_133833.nnic	chr8	-	2299	9	NIC	ENSMUSG00000031729.7	novel	3633	9	NA	NA	-48	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	212.348144270205	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCTAGTGTTGGTCAAA	NA	False	NA	-17	True	AATAAA	-16	NA	110419940	110397960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_110399274_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_133844.known	chr8	-	6990	7	FSM	ENSMUSG00000031729.7	ENSMUST00000212562.2	6990	7	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_1	46.2508258184531	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGTGTTGGTCAAAT	NA	False	NA	-16	True	AATAAA	-17	NA	110419879	110397959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_133849.known	chr8	+	1713	9	FSM	ENSMUSG00000031728.11	ENSMUST00000212192.2	1713	9	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	6.08147802758507	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCAGAACAACAGCTCT	NA	False	NA	NA	False	NA	NA	NA	110432251	110451221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_110432496_110432988_110433052_110434660_110434777_110436042_110436160_110444393_110444520_110447826_110447976_110448385_110448491_110449518_110449686_110450595
transcript_133850.nic	chr8	+	2189	9	NIC	ENSMUSG00000031728.11	novel	2127	9	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	2	20	junction_2	4.9180788932265	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCCTTGTCTCAT	NA	False	NA	8	True	AATAAA	-21	NA	110432137	110451564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_110432496_110432988_110433052_110434660_110434777_110436042_110436160_110444393_110444539_110447826_110447976_110448385_110448491_110449518_110449686_110450595
transcript_133853.nic	chr8	+	2054	8	NIC	ENSMUSG00000031728.11	novel	2127	9	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	2	14	junction_4	6.75821495572278	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCCTTGTCTCAT	NA	False	NA	8	True	AATAAA	-21	NA	110432137	110451564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_110432496_110432988_110433052_110436042_110436160_110444393_110444520_110447826_110447976_110448385_110448491_110449518_110449686_110450595
transcript_133855.known	chr8	+	2033	8	FSM	ENSMUSG00000031728.11	ENSMUST00000212964.2	2033	8	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_2	5.70356136505061	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCCTTGTCTCAT	NA	False	NA	8	True	AATAAA	-21	NA	110432177	110451564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_110432496_110432988_110433052_110436042_110436160_110444393_110444539_110447826_110447976_110448385_110448491_110449518_110449686_110450595
transcript_133861.known	chr8	-	461	4	FSM	ENSMUSG00000069895.5	ENSMUST00000212726.2	461	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	4.32049379893857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTGACGCTTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	110464371	110460147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110460375_110461936_110461996_110462091_110462158_110464262
transcript_133863.known	chr8	-	7439	3	FSM	ENSMUSG00000069895.5	ENSMUST00000212605.2	7439	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	6.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTTTGCGCCTTTT	NA	False	NA	-4	True	NA	NA	NA	110464354	110453086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110460375_110461936_110461996_110464262
transcript_133865.known	chr8	+	6899	24	FSM	ENSMUSG00000031731.17	ENSMUST00000093157.13	6899	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	59.7914143712471	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAACTTTGCTGCCTTGC	NA	False	NA	16	True	AATAAA	-18	NA	110505185	110590836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110557244_110557254_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
transcript_133869.known	chr8	+	3692	23	FSM	ENSMUSG00000031731.17	ENSMUST00000034171.9	3692	23	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	23.6531408988355	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTCCCACATTGTACTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110505537	110587990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
transcript_13387.known	chr10	-	455	5	FSM	ENSMUSG00000062981.6	ENSMUST00000217777.2	455	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1680.921826707	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGAAAAAATAAAAATACCC	NA	False	NA	-37	True	NA	NA	NA	95337789	95316695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95316840_95329492_95329578_95332685_95332750_95336244_95336385_95337767
transcript_133876.nic	chr8	+	978	5	ISM	ENSMUSG00000031731.17	ENSMUST00000034171.9	3692	23	-376	33047	-24	-21319	5prime_fragment	FALSE	canonical	3	143	junction_1	29.8108621143368	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTGAATGAGAAGAACC	NA	False	NA	NA	False	NA	NA	NA	110505161	110554943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869
transcript_133878.nic	chr8	+	512	2	ISM	ENSMUSG00000031731.17	ENSMUST00000173200.2	466	3	-367	2643	-24	-2643	5prime_fragment	FALSE	canonical	3	143	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCCAGAAAGAATGTGCT	NA	False	NA	NA	False	NA	NA	NA	110505161	110529657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_110505595_110529578
transcript_133880.known	chr8	-	2447	3	FSM	ENSMUSG00000001672.15	ENSMUST00000051430.7	2447	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCTTGCCTTGGATTTT	NA	False	NA	NA	False	AATAAA	-17	NA	110688835	110679542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110681374_110686344_110686473_110688347
transcript_133881.known	chr8	+	1649	10	FSM	ENSMUSG00000095941.4	ENSMUST00000213641.2	1649	10	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_3	3.97523195999963	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTTTATGAGATATGG	NA	False	NA	-42	True	GGGGCT	-45	NA	110827838	110838593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_110828167_110835615_110835726_110835834_110835858_110836017_110836077_110836409_110836623_110836712_110836955_110837152_110837295_110837438_110837593_110837930_110838005_110838289
transcript_133883.known	chr8	+	3180	5	FSM	ENSMUSG00000044676.11	ENSMUST00000058804.10	3180	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	8.66025403784439	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACTTCCAAATAAGTTT	953	False	NA	NA	False	AATAAA	-22	NA	110806395	110817642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_110806637_110809309_110809375_110810238_110810416_110810975_110811084_110815053
transcript_133884.known	chr8	+	4863	5	FSM	ENSMUSG00000044676.11	ENSMUST00000212754.2	4863	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	6.21992765231236	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGCTGAGACTTGCTTC	951	False	NA	NA	False	AATAAA	-16	NA	110806393	110819373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_110806637_110809309_110809375_110810288_110810416_110810975_110811084_110815053
transcript_133889.known	chr8	-	1431	11	FSM	ENSMUSG00000003657.10	ENSMUST00000003754.8	1431	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_9	44.1960405466372	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	7616	False	NA	-12	True	AATAAA	-22	NA	110894838	110869169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110881284_110881375_110883551_110883629_110894675
transcript_133891.nnic	chr8	-	1189	9	NNC	ENSMUSG00000003657.10	novel	1431	11	NA	NA	15095	0	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_8	57.2319840648566	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	NA	False	NA	-12	True	AATAAA	-22	NA	110879743	110869169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110879655
transcript_133894.known	chr8	+	3545	2	FSM	ENSMUSG00000046441.6	ENSMUST00000056972.6	3545	2	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_1	0	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTGTGTTTGTTTCA	3640	False	NA	NA	False	AATAAA	-13	NA	110944620	110951118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_110944719_110947671
transcript_13390.known	chr10	-	3277	4	FSM	ENSMUSG00000062981.6	ENSMUST00000218996.2	3277	4	0	0	0	0	multi-exon	FALSE	canonical	3	2875	junction_3	616.352712873616	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAATAAGTACCTT	NA	False	NA	NA	False	ATTAAA	-41	NA	95337801	95326538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95329578_95332685_95332750_95336244_95336385_95337767
transcript_133910.nnic	chr8	+	3060	19	NNC	ENSMUSG00000010936.12	novel	3069	19	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_5	106.024397378651	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	7295	False	NA	16	True	AATAAA	-20	NA	111345164	111447030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111360951_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111442058_111442210_111446438
transcript_133913.known	chr8	+	3069	19	FSM	ENSMUSG00000010936.12	ENSMUST00000034190.11	3069	19	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_15	41.1869046070606	1239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	7361	False	NA	16	True	AATAAA	-20	NA	111345230	111447030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111442058_111442210_111446438
transcript_13392.known	chr10	+	1103	4	FSM	ENSMUSG00000074781.6	ENSMUST00000220127.2	1103	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	985.351826619417	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGCCTTTGTACAGTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	95351046	95378868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_95351100_95377066_95377241_95377499_95377641_95378133
transcript_133924.known	chr8	+	2605	18	FSM	ENSMUSG00000010936.12	ENSMUST00000212663.2	2605	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_17	111.011860708634	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAGCATGAAAGGCTATT	7365	False	NA	NA	False	NA	NA	NA	111345234	111441011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111440728
transcript_133926.nnic	chr8	+	2984	18	NIC	ENSMUSG00000010936.12	novel	3069	19	NA	NA	-52	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_17	108.822098559751	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	7295	False	NA	16	True	AATAAA	-20	NA	111345164	111447030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111446438
transcript_13393.known	chr10	+	3867	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	0	0	0	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGATTTGACTGGTC	NA	False	NA	13	True	AATAAA	-17	NA	95351006	95381519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
transcript_133942.known	chr8	+	2305	15	FSM	ENSMUSG00000010936.12	ENSMUST00000212766.2	2305	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	121.354031743524	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGGGTTAATTGCT	7370	False	NA	NA	False	NA	NA	NA	111345239	111437315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436953
transcript_133951.known	chr8	+	3140	19	FSM	ENSMUSG00000010936.12	ENSMUST00000213003.2	3140	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	141.320186320739	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGTCTGCCTGCTCCT	7347	False	NA	14	True	AATAAA	-18	NA	111345216	111447028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111345626_111358661_111358813_111359080_111359244_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437189_111438224_111438344_111439379_111439460_111442058_111442210_111446438
transcript_133952.known	chr8	+	4717	14	FSM	ENSMUSG00000033763.15	ENSMUST00000052457.15	4717	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_11	11.3147544665827	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCCGGCTTCCTCCTGGC	NA	False	NA	7	True	AATAAA	-17	NA	111448107	111468032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111448423_111452825_111452888_111453006_111453081_111453744_111453830_111453935_111454028_111454108_111454184_111455359_111455518_111455801_111455910_111456654_111456753_111458689_111458811_111463777_111463853_111464203_111464381_111464561_111464728_111464921
transcript_133959.nnic	chr8	-	2069	7	NNC	ENSMUSG00000031750.16	novel	1709	7	NA	NA	-13603	0	at_least_one_novel_splicesite	TRUE	canonical	3	22	junction_6	7.54247233265651	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTGCATCTCTGATG	NA	False	NA	-23	True	ATTAAA	-16	NA	111482933	111468471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111482403
transcript_133963.known	chr8	+	2067	3	FSM	ENSMUSG00000090039.2	ENSMUST00000162828.2	2067	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	111481623	111485602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111481836_111482260_111482453_111483939
transcript_13397.nnic	chr10	-	3104	6	NNC	ENSMUSG00000020029.7	novel	3210	5	NA	NA	-91	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	23	junction_5	258.581824573963	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTTTATTTTTAGTTT	NA	False	NA	-21	True	AATAAA	-16	NA	95400099	95382868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_95385353_95385637_95385723_95387310_95387356_95388347_95388459_95399523_95399741_95399937
transcript_133974.known	chr8	-	4525	26	FSM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_23	101.482656646345	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATTTTTGCCACTGTGAA	NA	False	NA	-18	True	ATTAAA	-22	NA	111573408	111536870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
transcript_133975.nnic	chr8	-	4280	26	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-27	-255	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_25	162.261990620108	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGCGTGTGTAGTTTT	NA	False	NA	-30	True	TATAAA	-15	NA	111573446	111537125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573334
transcript_133987.known	chr8	+	2442	19	FSM	ENSMUSG00000031753.17	ENSMUST00000165867.8	2442	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	97.5620252220714	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTCTAAGCAGTTACAG	9194	False	NA	NA	False	NA	NA	NA	111573231	111608527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111573445_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
transcript_133994.known	chr8	+	2737	19	FSM	ENSMUSG00000031753.17	ENSMUST00000034203.17	2737	19	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_8	32.668367302671	1280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATTGTGTTGGGTCCAG	9628	False	NA	13	True	AATAAA	-18	NA	111573665	111608859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
transcript_13400.nnic	chr10	-	1002	6	NNC	ENSMUSG00000020029.7	novel	3210	5	NA	NA	-91	-2102	at_least_one_novel_splicesite	FALSE	non_canonical	2	23	junction_5	258.581824573963	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTAAGATGCCAAAGCC	NA	False	NA	-16	True	AATAAA	-19	NA	95400099	95384970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_95385353_95385637_95385723_95387310_95387356_95388347_95388459_95399523_95399741_95399937
transcript_134004.known	chr8	+	2292	18	FSM	ENSMUSG00000031753.17	ENSMUST00000174398.8	2292	18	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	100.263183085083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCATGTGGCCCGCCAGA	9648	False	NA	NA	False	NA	NA	NA	111573685	111608497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
transcript_134014.known	chr8	-	2957	13	FSM	ENSMUSG00000033732.11	ENSMUST00000212515.2	2957	13	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_10	76.148794402071	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAAATTAAATTTAA	NA	False	NA	NA	False	AAAAAG	-17	NA	111573419	111551066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
transcript_134019.known	chr8	+	577	2	FSM	ENSMUSG00000031753.17	ENSMUST00000174702.2	577	2	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAGGGAGAGATAGAATT	9633	False	NA	NA	False	NA	NA	NA	111573670	111576905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111573842_111576499
transcript_134022.known	chr8	-	1409	1	FSM	ENSMUSG00000033732.11	ENSMUST00000212843.2	1409	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAAAAGGCACGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	111573359	111571950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111572000_111573400
transcript_134023.known	chr8	-	3838	24	FSM	ENSMUSG00000033703.10	ENSMUST00000041382.7	3838	24	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_23	12.3354193641104	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCAGAAAACTGTTTTTT	1243	False	NA	-7	True	AATAAA	-19	NA	111629091	111609094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626464_111626570_111629053
transcript_134039.known	chr8	+	4396	7	FSM	ENSMUSG00000031749.13	ENSMUST00000034197.5	4396	7	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	8.28653526310404	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACCAAA	3037	False	NA	NA	False	ACTAAA	-30	NA	111646553	111699112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111646738_111683389_111684683_111688800_111688995_111694048_111694229_111695819_111695866_111696175_111696296_111696733
transcript_13404.known	chr10	-	3210	5	FSM	ENSMUSG00000020029.7	ENSMUST00000020217.7	3210	5	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_2	92.7937902017156	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTTTATTTTTAGTTT	NA	False	NA	-21	True	AATAAA	-16	NA	95400008	95382868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_95385353_95385637_95385723_95387310_95387356_95388347_95388459_95399523
transcript_134041.nnic	chr8	+	3784	7	NNC	ENSMUSG00000031749.13	novel	4396	7	NA	NA	-57	-609	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	33.1649915824905	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTCACTCATCTGTTCT	2980	False	NA	NA	False	ATTAAA	-15	NA	111646496	111698503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_111646738_111683389_111684683_111688860_111688995_111694048_111694229_111695819_111695866_111696175_111696296_111696733
transcript_134042.known	chr8	+	2177	6	FSM	ENSMUSG00000031749.13	ENSMUST00000117534.8	2177	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	6.46838465151849	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGTCATTACCTTTTAAG	3037	False	NA	NA	False	TATAAA	-19	NA	111646553	111696455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111646738_111683389_111684683_111688800_111688995_111694048_111694229_111695819_111695866_111696175
transcript_134047.known	chr8	-	2547	12	FSM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_8	46.4642402265948	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTTTGTGTACACTT	7686	False	NA	-28	True	ATTAAA	-10	NA	111724432	111701627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
transcript_134052.known	chr8	-	731	7	FSM	ENSMUSG00000015023.8	ENSMUST00000173183.2	731	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	37.1786228900426	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATGGAATGTTAAAGT	7716	False	NA	NA	False	NA	NA	NA	111724402	111707104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
transcript_134053.known	chr8	-	6612	12	FSM	ENSMUSG00000033658.17	ENSMUST00000040241.15	6612	12	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_11	90.8713558047041	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGGTATTTTGTCTGC	NA	False	NA	-5	True	AATAAA	-17	NA	111754396	111729819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
transcript_134054.known	chr8	-	3104	12	FSM	ENSMUSG00000033658.17	ENSMUST00000065784.6	3104	12	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_11	90.7354705715175	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACTGTGGATCAAACT	NA	False	NA	NA	False	AATAAA	-12	NA	111758383	111733290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
transcript_13409.known	chr10	+	670	3	FSM	ENSMUSG00000112188.2	ENSMUST00000219583.2	670	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	1	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTAAGTAATCTAGG	3220	False	NA	NA	False	NA	NA	NA	95567088	95575215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_95567365_95570676_95570791_95574935
transcript_134090.known	chr8	+	5750	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	0	0	0	0	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	3708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTGAGTCTGTGTTT	NA	False	NA	70	True	NA	NA	NA	111760533	111784296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
transcript_134103.nic	chr8	+	3336	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-2	-2097	combination_of_known_junctions	FALSE	canonical	2	137	junction_1	723.09724622626	1124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGGTGATGTCATGCGC	NA	False	NA	14	True	AATAAA	-16	NA	111760531	111782199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_111760577_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
transcript_134156.known	chr8	+	1326	1	FSM	ENSMUSG00000109941.2	ENSMUST00000210390.2	1326	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTGAGTCTGTGTTT	NA	False	NA	70	True	NA	NA	NA	111782970	111784296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111783000_111784300
transcript_134157.known	chr8	+	4938	18	FSM	ENSMUSG00000033624.11	ENSMUST00000039333.10	4938	18	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	8.20878085010087	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGTAGCA	NA	False	NA	NA	False	AATACA	-31	NA	111821272	111863706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_111821459_111828445_111828723_111830535_111830670_111839133_111839216_111839318_111839483_111841373_111841496_111841755_111841874_111843313_111843464_111844598_111844792_111847779_111847905_111850376_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
transcript_13417.nnic	chr10	+	1029	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	21	103	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	59	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAAAAAATGCAGTTTTG	NA	False	NA	NA	False	NA	NA	NA	95729325	95733222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_95729523_95729968_95730152_95732573
transcript_134170.known	chr8	-	7021	26	FSM	ENSMUSG00000003316.15	ENSMUST00000169020.8	7021	26	0	0	0	0	multi-exon	TRUE	canonical	3	407	junction_22	36.1425178978997	898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAAACAAGCTTTTTC	6428	False	NA	NA	False	AAGAAA	-30	NA	111985848	111881052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111884694_111886430_111886538_111887252_111887374_111888057_111888166_111888998_111889101_111889269_111889413_111890402_111890527_111892188_111892327_111895292_111895386_111896119_111896238_111897861_111897951_111899046_111899161_111899833_111899897_111900865_111900953_111904276_111904415_111905464_111905619_111907566_111907669_111909162_111909285_111914345_111914561_111915298_111915483_111917821_111917894_111919155_111919360_111924224_111924441_111926767_111926855_111928157_111928191_111985402
transcript_13419.known	chr10	+	858	3	FSM	ENSMUSG00000112400.2	ENSMUST00000218392.2	858	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	58.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGTGGAAGTGGGTAGG	NA	False	NA	NA	False	NA	NA	NA	95729304	95733119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_95729528_95730062_95730152_95732573
transcript_134192.nic	chr8	-	2347	16	ISM	ENSMUSG00000003316.15	ENSMUST00000169020.8	7021	26	-24	16812	-24	-13335	5prime_fragment	FALSE	canonical	3	407	junction_12	34.2459081091774	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTATGTATCTCTTTAAG	6404	False	NA	NA	False	CATAAA	-4	NA	111985872	111897864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_111897951_111899046_111899161_111899833_111899897_111900865_111900953_111904276_111904415_111905464_111905619_111907566_111907669_111909162_111909285_111914345_111914561_111915298_111915483_111917821_111917894_111919155_111919360_111924224_111924441_111926767_111926855_111928157_111928191_111985402
transcript_134201.known	chr8	-	4443	13	FSM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_9	43.0880074833925	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCAGTGTCTTCCGCCTG	5496	False	NA	-9	True	AATAAA	-17	NA	112026854	111997575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766_112024275_112026766
transcript_134204.known	chr8	-	4896	27	FSM	ENSMUSG00000031959.16	ENSMUST00000034437.8	4896	27	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	16.2917647181985	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTTGTGTGTGTAAAT	NA	False	NA	NA	False	GATAAA	-25	NA	112248702	112175650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112199261_112199319_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
transcript_134206.known	chr8	-	5083	26	FSM	ENSMUSG00000031959.16	ENSMUST00000038193.15	5083	26	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_4	5.67718239974725	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATCGTGTACTAACACA	NA	False	NA	-19	True	AGTAAA	-16	NA	112248724	112175428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
transcript_134218.known	chr8	+	501	6	FSM	ENSMUSG00000033545.15	ENSMUST00000174376.8	501	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	46.7272939511802	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAACAGCTGCTGGTGT	NA	False	NA	NA	False	AGTAAA	-3	NA	112264118	112349133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_112264197_112333378_112333481_112335924_112336021_112345837_112345944_112348227_112348320_112349106
transcript_134219.known	chr8	+	1238	5	FSM	ENSMUSG00000033545.15	ENSMUST00000173506.8	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	22.2640405137971	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCCAGGAGGGAAAGGGC	NA	False	NA	-87	True	AATGAA	-27	NA	112263751	112349605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_112264197_112335924_112336021_112345837_112345944_112348227_112348320_112349106
transcript_134220.known	chr8	+	4451	5	FSM	ENSMUSG00000033545.15	ENSMUST00000168428.8	4451	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	33.169074451965	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGACTGGGACCCACAAG	NA	False	NA	NA	False	NA	NA	NA	112263271	112352662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_112264197_112335924_112336021_112345837_112345944_112348227_112348320_112349430
transcript_134223.known	chr8	+	3108	4	FSM	ENSMUSG00000033545.15	ENSMUST00000095176.12	3108	4	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_3	7.78888096369861	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACCGTGTGATTTATT	NA	False	NA	NA	False	ATTAAA	-17	NA	112263473	112350410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_112264197_112335924_112336021_112345837_112345944_112348227
transcript_134224.known	chr8	+	549	3	FSM	ENSMUSG00000033545.15	ENSMUST00000173726.8	549	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	51.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAGGCAGAAGGTCCCC	NA	False	NA	NA	False	NA	NA	NA	112264094	112348568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_112264197_112345837_112345944_112348227
transcript_134226.known	chr8	+	1811	4	FSM	ENSMUSG00000055835.11	ENSMUST00000077791.8	1811	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	17.3076733143296	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGTTTTTGGCTTTTT	NA	False	NA	13	True	AATAGA	-20	NA	112370137	112397643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_112370245_112385017_112385074_112392709_112392837_112396122
transcript_134228.known	chr8	+	1409	4	FSM	ENSMUSG00000055835.11	ENSMUST00000211926.2	1409	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	24.1430919496424	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112370168	112397314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_112370245_112385017_112385074_112392751_112392837_112396122
transcript_13423.nic	chr10	+	3098	21	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	-50	17049	-8	1843	5prime_fragment	FALSE	canonical	3	30	junction_7	6.38964005245992	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAAAGACGAACAACAGC	2729	False	NA	NA	False	ATTAAA	-7	NA	95776561	95864331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_95776835_95809847_95809941_95825423_95825552_95826116_95826172_95826261_95826328_95829285_95829326_95830746_95830861_95831430_95831553_95832798_95832955_95838748_95838866_95846636_95846976_95847946_95848097_95849167_95849288_95853867_95854072_95855692_95855894_95857468_95857583_95859758_95859915_95861893_95862034_95862418_95862750_95862913_95863016_95864254
transcript_134235.known	chr8	-	3116	7	FSM	ENSMUSG00000031955.11	ENSMUST00000212349.2	3116	7	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	13.2591687354659	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTACAGAAATGC	NA	False	NA	-5	True	AATAAA	-14	NA	112458768	112437108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112438027_112439232_112439323_112439970_112441069_112441914_112442032_112442246_112442409_112447330_112447964_112458670
transcript_134236.known	chr8	-	3142	7	FSM	ENSMUSG00000031955.11	ENSMUST00000166232.4	3142	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	42.5597619040959	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCCTACAGAAATGCTTG	NA	False	NA	-2	True	AATAAA	-17	NA	112470441	112437105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112438027_112439232_112439323_112439970_112441069_112441914_112442032_112442246_112442409_112447330_112447964_112470320
transcript_134244.known	chr8	-	2007	2	FSM	ENSMUSG00000031955.11	ENSMUST00000212147.2	2007	2	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	112458737	112446023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112447964_112458670
transcript_134247.known	chr8	-	1178	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	0	0	0	0	multi-exon	FALSE	canonical	3	1827	junction_5	79.8013157786261	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGGTTGGTGAGAGTAA	NA	False	NA	-23	True	AATAAA	-15	NA	112580923	112495122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
transcript_134253.nic	chr8	-	421	3	ISM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	-79	73424	-79	-73424	5prime_fragment	FALSE	canonical	3	1827	junction_1	36	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGATGAAGAGGAGCAAGA	NA	False	NA	NA	False	NA	NA	NA	112581002	112568546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_112568623_112571725_112571844_112580775
transcript_134255.nic	chr8	-	291	2	ISM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	-60	76638	-60	-76638	5prime_fragment	FALSE	canonical	3	1899	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAAGAAGGAAGGCTCA	NA	False	NA	-2	True	AGTAAA	-44	NA	112580983	112571760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_112571844_112580775
transcript_134256.known	chr8	-	3878	3	FSM	ENSMUSG00000031953.3	ENSMUST00000034431.3	3878	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	7	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGCGTTGGGAACCTT	NA	False	NA	-5	True	AATAAA	-14	NA	112603382	112589669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112593129_112596219_112596391_112603134
transcript_13426.nic	chr10	+	2711	19	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	-103	18892	-3	0	5prime_fragment	FALSE	canonical	3	30	junction_7	6.63720341226653	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAAGAAGAAAATGT	2676	False	NA	NA	False	AATAAA	-37	NA	95776508	95862488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_95776835_95809847_95809941_95825423_95825552_95826116_95826172_95826261_95826328_95829285_95829326_95830746_95830861_95831430_95831553_95832798_95832955_95838748_95838866_95846636_95846976_95847946_95848097_95849167_95849288_95853867_95854072_95855692_95855894_95857468_95857583_95859758_95859915_95861893_95862034_95862418
transcript_134269.known	chr8	-	2920	8	FSM	ENSMUSG00000031951.9	ENSMUST00000211866.2	2920	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	117.289281309948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTGTACTGAGAACTC	NA	False	NA	-15	True	ATTAAA	-17	NA	112660431	112638704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112653477_112653558_112659991_112660162_112660259
transcript_13427.nic	chr10	+	2885	19	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	-103	18718	-3	174	5prime_fragment	FALSE	canonical	3	30	junction_7	6.63720341226653	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCAAAAGTTTCGGATTC	2676	False	NA	NA	False	AAGAAA	-3	NA	95776508	95862662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_95776835_95809847_95809941_95825423_95825552_95826116_95826172_95826261_95826328_95829285_95829326_95830746_95830861_95831430_95831553_95832798_95832955_95838748_95838866_95846636_95846976_95847946_95848097_95849167_95849288_95853867_95854072_95855692_95855894_95857468_95857583_95859758_95859915_95861893_95862034_95862418
transcript_134277.known	chr8	-	2984	7	FSM	ENSMUSG00000031951.9	ENSMUST00000034429.9	2984	7	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	6.79256129077161	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	-4	True	ATTAAA	-15	NA	112660513	112638642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
transcript_134279.nnic	chr8	-	2787	7	NNC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	-33	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	98.9258981932099	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACGTTTCCCTTGGCTTCT	NA	False	NA	-7	True	ATTAAA	-12	NA	112660464	112638645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_112640605_112641128_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
transcript_134288.known	chr8	+	1677	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	0	0	0	0	multi-exon	FALSE	canonical	3	2738	junction_1	80.3838015744189	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAACATGTACT	NA	False	NA	NA	False	NA	NA	NA	112667334	112680244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
transcript_13429.nic	chr10	+	1113	10	ISM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	-49	42565	-7	0	5prime_fragment	FALSE	canonical	3	30	junction_7	4.31477507532169	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATACAAAAACTTAAAGGT	2730	False	NA	NA	False	NA	NA	NA	95776562	95838815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_95776835_95809847_95809941_95825423_95825552_95826116_95826172_95826261_95826328_95829285_95829326_95830746_95830861_95831430_95831553_95832798_95832955_95838748
transcript_134294.known	chr8	-	2762	9	FSM	ENSMUSG00000031949.18	ENSMUST00000139820.8	2762	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_8	9.81070843517429	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAAGGGTGACTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	112718934	112697496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
transcript_134298.nnic	chr8	-	2628	9	NNC	ENSMUSG00000031949.18	novel	2762	9	NA	NA	5	-104	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_8	15.189943219117	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAACAGGAGTGAAG	NA	False	NA	NA	False	NA	NA	NA	112718929	112697600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717020_112718812
transcript_1343.nic	chr1	+	3171	25	ISM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	-24	12387	-24	0	5prime_fragment	FALSE	canonical	3	77	junction_23	83.8039627145797	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGATTCAGAAAAAGAGAAAG	3280	False	NA	NA	False	NA	NA	NA	43973142	44029744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670
transcript_134301.nnic	chr8	-	2009	9	NNC	ENSMUSG00000031949.18	novel	2762	9	NA	NA	5	-35	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_8	15.189943219117	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTACTAAAATAAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	112718929	112698219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717020_112718812
transcript_134311.known	chr8	-	2189	16	FSM	ENSMUSG00000031948.15	ENSMUST00000164470.3	2189	16	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_15	556.875793053432	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112737841
transcript_134317.known	chr8	-	2131	15	FSM	ENSMUSG00000031948.15	ENSMUST00000093120.13	2131	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	463.92143951408	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737841
transcript_13432.nic	chr10	+	623	5	ISM	ENSMUSG00000036499.10	ENSMUST00000218517.2	1251	10	-110	12533	-3	-12533	5prime_fragment	FALSE	canonical	3	37	junction_2	3.08220700148449	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATTAAAGAAAGAATTAGA	2676	False	NA	NA	False	ATTAAA	-36	NA	95776508	95826282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_95776835_95809847_95809941_95825423_95825552_95826116_95826172_95826261
transcript_134328.known	chr8	-	2008	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	0	0	0	0	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	2636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737955	112720074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
transcript_13433.nic	chr10	+	613	4	ISM	ENSMUSG00000036499.10	ENSMUST00000218517.2	1251	10	-110	12633	-3	-12633	5prime_fragment	FALSE	canonical	3	37	junction_2	3.29983164553722	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTAATGATTGTTTATT	2676	False	NA	NA	False	AATAAA	-1	NA	95776508	95826182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_95776835_95809847_95809941_95825423_95825552_95826116
transcript_13434.known	chr10	+	7749	29	FSM	ENSMUSG00000036499.10	ENSMUST00000053484.8	7749	29	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	7.28037269173854	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAATGACTATGATTGGTT	2779	False	NA	14	True	ATTAAA	-26	NA	95776611	95881380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_95776835_95809847_95809941_95825423_95825552_95826116_95826172_95826261_95826328_95829285_95829326_95830746_95830861_95831430_95831553_95832798_95832955_95838748_95838866_95846636_95846976_95847946_95848097_95849167_95849288_95853867_95854072_95855692_95855894_95857468_95857583_95859758_95859915_95861893_95862034_95862418_95862750_95862913_95863016_95864254_95864450_95867372_95867556_95872441_95872628_95873275_95873408_95874554_95874741_95875384_95875624_95876113_95876235_95877301_95877401_95877943
transcript_134349.known	chr8	+	3560	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	1.5	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACTGTCTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	112738029	112747160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_112738775_112741968_112742094_112744470
transcript_13435.known	chr10	+	5001	2	FSM	ENSMUSG00000036478.9	ENSMUST00000038377.9	5001	2	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_1	0	440	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTGTATTCCTTTTTCT	NA	False	NA	NA	False	ATTAAA	-23	NA	96452867	96458671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_96453335_96454137
transcript_134350.known	chr8	+	3470	6	FSM	ENSMUSG00000078908.11	ENSMUST00000179926.9	3470	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	7.91454357496375	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGAGCATTCTTGTT	NA	False	NA	NA	False	AAGAAA	-21	NA	114362218	114370438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_114362341_114362743_114362902_114364372_114364718_114365166_114365987_114366318_114366467_114368561
transcript_134354.known	chr8	+	4998	5	FSM	ENSMUSG00000078908.11	ENSMUST00000035777.10	4998	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	4.52769256906871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTCAGCCTCTTTTCTT	NA	False	NA	20	True	AATAAA	-21	NA	114362466	114371811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_114362902_114364372_114364718_114365166_114365987_114366318_114366467_114368561
transcript_134358.known	chr8	+	3543	4	FSM	ENSMUSG00000031767.14	ENSMUST00000073521.12	3543	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGAGGTCTGTACCTG	NA	False	NA	NA	False	NA	NA	NA	114860296	114881479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_114860441_114863077_114863232_114874634_114874794_114878393
transcript_134359.known	chr8	+	707	3	FSM	ENSMUSG00000031767.14	ENSMUST00000134593.2	707	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTTAATGTCATTCAT	NA	False	NA	NA	False	ACTAAA	-29	NA	114860381	114875128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_114860441_114863077_114863232_114874634
transcript_134360.known	chr8	+	3666	9	FSM	ENSMUSG00000046844.7	ENSMUST00000049509.7	3666	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.484122918275927	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTCTTATGGCATCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	114932369	115100811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_114932683_114956945_114957076_114963322_114963539_114998030_114998174_115008983_115009088_115011073_115011130_115015987_115016183_115096591_115096676_115098386
transcript_134361.known	chr8	+	1771	9	FSM	ENSMUSG00000004637.16	ENSMUST00000109108.9	1771	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	40.6294228361664	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAAGGAAAGTGGGTGA	NA	False	NA	NA	False	AATAAA	-19	NA	115166434	115601978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_115601340
transcript_134365.known	chr8	+	3781	5	FSM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	47.8663503935698	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTAGGTGGCTTTTGGG	NA	False	NA	6	True	AATAAA	-6	NA	115166441	115180558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115177256
transcript_134367.known	chr8	+	2383	5	FSM	ENSMUSG00000004637.16	ENSMUST00000109107.3	2383	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	54.7830950202706	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCGGGATACCTGCTC	NA	False	NA	NA	False	AATAAA	-17	NA	115166441	115201269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115199365
transcript_134368.nic	chr8	+	912	4	ISM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	-263	5310	-216	-5310	5prime_fragment	FALSE	canonical	3	123	junction_1	3.39934634239519	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAGTGTTACAGTGTGA	NA	False	NA	NA	False	ATTAAA	-17	NA	115166178	115175248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899
transcript_134369.known	chr8	+	2244	9	FSM	ENSMUSG00000004637.16	ENSMUST00000004756.14	2244	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	27.9013328534678	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTGTCTGAAGTGTAT	NA	False	NA	12	True	AATAAA	-15	NA	115166394	116079447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_116078376
transcript_134372.nnic	chr8	-	2450	8	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59798	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	56.0444430058568	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTAGGAAATTTTTTTC	NA	False	NA	65	True	NA	NA	NA	117399932	117301138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117380271_117380432_117399859
transcript_134382.nnic	chr8	-	2320	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59768	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	431	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTAGGAAATTTTTTTC	NA	False	NA	65	True	NA	NA	NA	117399962	117301138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
transcript_134385.known	chr8	-	2411	7	FSM	ENSMUSG00000031758.11	ENSMUST00000109102.4	2411	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	26.9670580935745	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTAGGAAATTTTTTTC	1769	False	NA	65	True	NA	NA	NA	117459730	117301138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117459536
transcript_13439.nic	chr10	+	5021	21	NIC	ENSMUSG00000019943.11	novel	1404	6	NA	NA	-29	14	combination_of_known_junctions	FALSE	canonical	3	221	junction_9	23.8756675299352	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGAGCAGTGGTGTTCTA	NA	False	NA	NA	False	NA	NA	NA	98750238	98859699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
transcript_134391.nnic	chr8	-	2232	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59768	-88	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGTAAGTGGAAATTCTGA	NA	False	NA	-23	True	AATATA	-15	NA	117399962	117301226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
transcript_13440.nic	chr10	+	4991	21	NIC	ENSMUSG00000019943.11	novel	1404	6	NA	NA	240	253	combination_of_known_junctions	FALSE	canonical	3	221	junction_9	23.8756675299352	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAACCTTTAGTCTTTTT	NA	False	NA	6	True	ATTAAA	-15	NA	98750507	98859938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
transcript_134400.known	chr8	-	793	5	FSM	ENSMUSG00000014633.16	ENSMUST00000150128.8	793	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	168.345440983711	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117648186	117616256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_117616599_117620826_117620899_117623078_117623254_117637866_117637974_117648089
transcript_134402.known	chr8	-	876	4	FSM	ENSMUSG00000014633.16	ENSMUST00000131616.8	876	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	157.584545209512	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	117648161	117616017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_117616599_117620826_117620899_117637822_117637974_117648089
transcript_134403.known	chr8	-	1459	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTTGCAGAGTGGCTT	NA	False	NA	NA	False	AATAAA	-32	NA	117648194	117615423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
transcript_134407.nnic	chr8	-	473	4	NNC	ENSMUSG00000014633.16	novel	1459	4	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	149.010812433938	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCCTCCCTTTCTTTAA	NA	False	NA	-6	True	AATAAA	-14	NA	117648203	117616257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_117616438_117620826_117620899_117637866_117637974_117648089
transcript_134408.known	chr8	-	413	3	FSM	ENSMUSG00000014633.16	ENSMUST00000134356.2	413	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	154	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGCGCTGTGCCAGGGAG	NA	False	NA	-102	True	NA	NA	NA	117648185	117616353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_117616599_117620826_117620899_117648089
transcript_134409.known	chr8	-	523	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	157.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTGGACAGCGTGGGC	NA	False	NA	-20	True	NA	NA	NA	117648178	117616271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_117616599_117637866_117637974_117648089
transcript_134415.known	chr8	+	1768	12	FSM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	41.3065540194129	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCAGTTCCTTTGGATG	NA	False	NA	8	True	AATAAA	-16	NA	117648478	117668242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
transcript_13442.known	chr10	+	7130	21	FSM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	42.6978922196401	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGACTGAACTTTTTGAC	NA	False	NA	12	True	AATAAA	-24	NA	98751013	98862005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_98751234_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
transcript_134424.known	chr8	+	447	2	FSM	ENSMUSG00000031756.6	ENSMUST00000212578.2	447	2	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCCCAGCCCTGGCAGCC	NA	False	NA	NA	False	NA	NA	NA	117648468	117649459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_117648523_117649066
transcript_134426.nnic	chr8	+	2620	5	NNC	ENSMUSG00000047388.11	novel	4877	4	NA	NA	-25	-2198	at_least_one_novel_splicesite	TRUE	non_canonical	1	4	junction_1	136.130452140585	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGCCTATGTTTGCTCCT	NA	False	NA	15	True	TATAAA	-21	NA	117670106	117684986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_117670169_117670252_117670490_117679612_117679739_117681452_117681653_117682991
transcript_134427.nnic	chr8	+	4818	5	NNC	ENSMUSG00000047388.11	novel	4877	4	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	4	junction_1	136.130452140585	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCTGTGTGAATCTTGT	NA	False	NA	24	True	ATTAAA	-18	NA	117670106	117687184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_117670169_117670252_117670490_117679612_117679739_117681452_117681653_117682991
transcript_134429.known	chr8	+	4877	4	FSM	ENSMUSG00000047388.11	ENSMUST00000109099.4	4877	4	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_2	31.5066130624456	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCTGTGTGAATCTTGT	NA	False	NA	24	True	ATTAAA	-18	NA	117670131	117687184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_117670490_117679612_117679739_117681452_117681653_117682991
transcript_134436.known	chr8	-	1482	3	FSM	ENSMUSG00000031847.9	ENSMUST00000213068.2	1482	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGCCTGAAACTCATTT	8525	False	NA	NA	False	AATATA	-16	NA	117705698	117697846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_117698896_117700190_117700439_117705513
transcript_134441.known	chr8	-	1443	5	FSM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	1952	junction_3	87.9982244139051	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGGTGTGGTGGTGCA	NA	False	NA	NA	False	NA	NA	NA	117720276	117708548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117720026
transcript_134442.nnic	chr8	-	1184	4	NIC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	14	-165	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	974.020647739165	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGATTGTGATTTTTA	NA	False	NA	-12	True	AATAAA	-13	NA	117720262	117708713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_117709466_117710546_117710679_117714051_117714116_117720026
transcript_134449.nic	chr8	-	2444	10	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	53577	13644	-29	0	internal_fragment	FALSE	canonical	3	6	junction_9	8.83735058895475	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGGCATGTTCTTATTT	NA	False	NA	NA	False	TATAAA	-19	NA	117755611	117736061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556_117743743_117746143_117746282_117747778_117747873_117748556_117748762_117750601_117750831_117755017
transcript_13445.nic	chr10	+	2748	13	NIC	ENSMUSG00000019943.11	novel	1249	4	NA	NA	87	-1910	combination_of_known_junctions	FALSE	canonical	3	221	junction_9	23.9577173833866	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATACGAAATGAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	98750354	98845422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265
transcript_13446.nic	chr10	+	1693	8	NIC	ENSMUSG00000019943.11	novel	1249	4	NA	NA	-29	164	combination_of_known_junctions	FALSE	canonical	3	223	junction_6	12.7022414862697	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAATCTGCCAAAAAAGGA	NA	False	NA	NA	False	AAGAAA	-1	NA	98750238	98830593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507
transcript_134460.nic	chr8	-	1235	5	ISM	ENSMUSG00000034416.19	ENSMUST00000162080.2	1716	8	7041	0	7041	0	3prime_fragment	FALSE	canonical	3	20	junction_4	5.53962995154008	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGGCATGTTCTTATTT	4464	False	NA	NA	False	TATAAA	-19	NA	117743793	117736061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556
transcript_134462.nnic	chr8	-	1165	4	NIC	ENSMUSG00000034416.19	novel	1716	8	NA	NA	6979	-4	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	9.84321537348893	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTGGCATGTTCTT	4402	False	NA	NA	False	TATAAA	-15	NA	117743855	117736065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_117736470_117740602_117740737_117741601_117741930_117743556
transcript_134465.known	chr8	+	13461	11	FSM	ENSMUSG00000052557.12	ENSMUST00000162997.3	13461	11	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_7	6.18465843842649	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTTGAATCCCTTTGTG	NA	False	NA	4	True	AATAAA	-17	NA	117884875	117942736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_117885041_117910239_117910355_117913885_117914237_117917010_117917229_117917402_117917525_117919978_117920092_117920851_117921002_117922504_117922642_117923190_117923320_117930688_117930799_117930885
transcript_134470.known	chr8	+	2408	21	FSM	ENSMUSG00000034390.17	ENSMUST00000166750.9	2408	21	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_12	7.20052081449669	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAACAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	117983802	118186169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_117984141_118103813_118103940_118111696_118111748_118137999_118138162_118142953_118142996_118149583_118149647_118153228_118153310_118156451_118156556_118157932_118158038_118163304_118163659_118172054_118172121_118173809_118173837_118174138_118174188_118175768_118175877_118178898_118179016_118179818_118179960_118180561_118180610_118181638_118181786_118182377_118182484_118183625_118183697_118186067
transcript_134471.nnic	chr8	+	2271	21	NNC	ENSMUSG00000034390.17	novel	4693	15	NA	NA	-5879	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11.4737744443579	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAACAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	118070029	118186169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_118070231_118103813_118103940_118111696_118111748_118137999_118138162_118142953_118142996_118149583_118149647_118153228_118153310_118156451_118156556_118157932_118158038_118163304_118163659_118172054_118172121_118173809_118173837_118174138_118174188_118175768_118175877_118178898_118179016_118179818_118179960_118180561_118180610_118181638_118181786_118182377_118182484_118183625_118183697_118186067
transcript_134476.known	chr8	+	4298	33	FSM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_7	32.3080872228611	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCTGTACCTGATCTGT	NA	False	NA	11	True	AATAAA	-23	NA	118225029	118361881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_118225169_118230873_118231113_118282713_118282858_118284041_118284136_118284807_118284856_118293540_118293626_118294902_118294987_118300079_118300124_118300655_118300729_118304561_118304664_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
transcript_13448.nic	chr10	+	1623	6	NIC	ENSMUSG00000019943.11	novel	1249	4	NA	NA	-84	2738	combination_of_known_junctions	FALSE	canonical	3	240	junction_3	8.61626369141521	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGGTGTGGCGGTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	98750183	98827064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923
transcript_134485.nnic	chr8	+	3397	24	NNC	ENSMUSG00000034330.11	novel	4298	33	NA	NA	81235	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	35.9048311486207	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCTGTACCTGATCTGT	NA	False	NA	11	True	AATAAA	-23	NA	118306264	118361881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_118306416_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
transcript_134489.known	chr8	-	2615	3	FSM	ENSMUSG00000034308.14	ENSMUST00000173522.8	2615	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTGGGTTAAATATTCA	NA	False	NA	0	True	AATAAA	-17	NA	118400428	118388140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_118390572_118391725_118391820_118400338
transcript_13449.nic	chr10	+	1563	6	ISM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	-192	34941	-192	2738	5prime_fragment	FALSE	canonical	3	93	junction_1	63.0333245196539	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGGTGTGGCGGTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	98750821	98827064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_98751234_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923
transcript_134490.known	chr8	-	1068	5	FSM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_1	47.4572175754121	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	False	NA	-12	True	AATAAA	-22	NA	118528682	118518383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528590
transcript_134494.known	chr8	-	887	3	FSM	ENSMUSG00000031843.3	ENSMUST00000211818.2	887	3	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_1	49.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTTCAGCTTGTGCCAGA	NA	False	NA	NA	False	NA	NA	NA	118528666	118520712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_118521411_118525782_118525896_118528590
transcript_134497.known	chr8	+	638	5	FSM	ENSMUSG00000031839.8	ENSMUST00000212468.2	638	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	859.671594273069	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTCGTGATCACGTGA	NA	False	NA	109	True	GATAAA	-7	NA	120071260	120075082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120071360_120071674_120071742_120072351_120072473_120073563_120073607_120074774
transcript_134498.known	chr8	+	1208	4	FSM	ENSMUSG00000031839.8	ENSMUST00000034300.8	1208	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	885.438121308692	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAAGAATGGTGTGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	120071226	120075661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120071360_120071674_120071742_120072351_120072473_120074774
transcript_134502.known	chr8	+	711	2	FSM	ENSMUSG00000031839.8	ENSMUST00000213037.2	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	2011	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGCGGGGGCCTGGGGGG	NA	False	NA	NA	False	TTTAAA	-4	NA	120071254	120072280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120071360_120071674
transcript_134503.nnic	chr8	+	2067	6	NNC	ENSMUSG00000074064.7	novel	2128	5	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	31.9749902267381	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTTAAGTCTACTTCA	1461	False	NA	4	True	ATTAAA	-17	NA	120121608	120137826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_120121943_120121996_120122210_120128219_120128333_120129172_120129330_120134294_120134445_120136726
transcript_134504.known	chr8	+	2128	5	FSM	ENSMUSG00000074064.7	ENSMUST00000098367.5	2128	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	28.3317401512862	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCACTGTGTACTTTTCTT	1469	False	NA	19	True	ATTAAA	-32	NA	120121616	120137841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120122210_120128219_120128333_120129172_120129330_120134294_120134445_120136726
transcript_134506.known	chr8	+	2005	6	FSM	ENSMUSG00000074063.11	ENSMUST00000152420.8	2005	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCCTGAGGAGTCTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	120163856	120172995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120164033_120168133_120168242_120169171_120169309_120169654_120169847_120169930_120170023_120171695
transcript_134508.known	chr8	+	1976	13	FSM	ENSMUSG00000031837.15	ENSMUST00000098363.10	1976	13	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	4.71625439894367	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTGTCTCTGTCCCTTT	NA	False	NA	11	True	AATAAA	-19	NA	120173457	120199379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120174004_120176820_120176846_120178820_120178930_120180939_120180966_120181097_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
transcript_13451.known	chr10	+	2862	12	FSM	ENSMUSG00000019952.16	ENSMUST00000020113.15	2862	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_11	10.2158522093674	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAATGAAATGTA	NA	False	NA	NA	False	NA	NA	NA	98942897	99033850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
transcript_134510.known	chr8	-	2623	11	FSM	ENSMUSG00000034224.15	ENSMUST00000036748.15	2623	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCACTGGGCTGCCTTGAG	NA	False	NA	NA	False	AATAAA	-20	NA	120228437	120206340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120207582_120209366_120209419_120212188_120212398_120212715_120212864_120214044_120214160_120218983_120219042_120220934_120221037_120222799_120222933_120226399_120226599_120227739_120227931_120228262
transcript_134514.nnic	chr8	-	4318	24	NNC	ENSMUSG00000031835.17	novel	4336	24	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_23	138.535194084391	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8118	False	NA	-7	True	AATAAA	-14	NA	120285497	120234894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120276296_120276397_120285384
transcript_134516.known	chr8	-	4336	24	FSM	ENSMUSG00000031835.17	ENSMUST00000098362.11	4336	24	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_23	140.895341173728	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8149	False	NA	-7	True	AATAAA	-14	NA	120285466	120234894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120276296_120276446_120285384
transcript_134521.nnic	chr8	-	4233	23	NNC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_18	111.712413021743	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8076	False	NA	-7	True	AATAAA	-14	NA	120285539	120234894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268407_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
transcript_134522.nic	chr8	-	4396	23	NIC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_22	108.399513584954	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8196	False	NA	-7	True	AATAAA	-14	NA	120285419	120234894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285128
transcript_134523.known	chr8	-	4195	23	FSM	ENSMUSG00000031835.17	ENSMUST00000081381.6	4195	23	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_22	51.0282088571954	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8141	False	NA	-7	True	AATAAA	-14	NA	120285474	120234894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
transcript_134532.known	chr8	-	6624	22	FSM	ENSMUSG00000031835.17	ENSMUST00000212685.2	6624	22	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_21	52.2289569642955	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8141	False	NA	-7	True	AATAAA	-14	NA	120285474	120234894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
transcript_13455.known	chr10	+	1799	11	FSM	ENSMUSG00000019952.16	ENSMUST00000159228.8	1799	11	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	25.0896392959325	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTCTAGATTTTATTGTT	NA	False	NA	NA	False	NA	NA	NA	98942943	99032914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99028643_99028860_99032487
transcript_134553.nic	chr8	-	3107	5	NIC	ENSMUSG00000034189.6	novel	3141	5	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	55.8496866598193	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCCCGCCACCAGAGGGT	NA	False	NA	-10	True	AATAAA	-19	NA	120301929	120288727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294690_120301830
transcript_134555.known	chr8	-	3141	5	FSM	ENSMUSG00000034189.6	ENSMUST00000036049.6	3141	5	0	0	0	0	multi-exon	TRUE	canonical	3	107	junction_4	18.9274932307477	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCCCGCCACCAGAGGGT	NA	False	NA	-10	True	AATAAA	-19	NA	120301922	120288727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294731_120301830
transcript_134558.known	chr8	-	3309	15	FSM	ENSMUSG00000031832.16	ENSMUST00000147964.8	3309	15	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_9	11.7969643276115	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGTGTGTAAAGCCCAC	1064	False	NA	-2	True	NA	NA	NA	120331961	120324713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329496_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
transcript_134560.known	chr8	-	3236	15	FSM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	0	0	0	0	multi-exon	FALSE	canonical	1	17	junction_9	12.1866856085832	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGTGTGTAAAGCCCAC	1064	False	NA	-2	True	NA	NA	NA	120331961	120324713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329569_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
transcript_134563.known	chr8	+	2821	12	FSM	ENSMUSG00000031831.7	ENSMUST00000093100.3	2821	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.65144564768954	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCATTGCTTCAGCCTA	NA	False	NA	NA	False	AATACA	-14	NA	120301973	120325193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120302207_120304069_120304206_120305966_120306059_120309247_120309470_120309585_120309753_120314916_120315039_120317317_120317476_120318439_120318698_120321571_120321664_120322682_120322743_120323425_120323823_120324309
transcript_134570.nnic	chr8	+	2020	10	NNC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_8	9.71571210608852	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGCGTGTTGGGA	4224	False	NA	7	True	AATAAA	-12	NA	120339428	120343663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343110_120343269_120343352
transcript_134571.known	chr8	+	1926	10	FSM	ENSMUSG00000024266.9	ENSMUST00000098361.4	1926	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	9.71571210608852	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGCGTGTTGGGA	4281	False	NA	7	True	AATAAA	-12	NA	120339485	120343663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343147_120343269_120343352
transcript_134573.nic	chr8	+	2215	9	NIC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	-57	0	intron_retention	FALSE	canonical	3	28	junction_5	5.50993421013355	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGCGTGTTGGGA	4224	False	NA	7	True	AATAAA	-12	NA	120339428	120343663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120343269_120343352
transcript_13459.known	chr10	+	5089	1	FSM	ENSMUSG00000090035.4	ENSMUST00000161240.4	5089	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGATGATTTTAGTCTAT	NA	False	NA	16	True	AATAAA	-30	NA	98944020	98949109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_98944000_98949100
transcript_134592.known	chr8	-	3806	3	FSM	ENSMUSG00000045246.12	ENSMUST00000061828.10	3806	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCCAGGCTGTTTGTTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	120362419	120350592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120353159_120359624_120360416_120361970
transcript_134594.nnic	chr8	+	2494	21	NNC	ENSMUSG00000034112.10	novel	3222	27	NA	NA	33707	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	2.80133896556629	19	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCATCTCTCTCTCTGCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	120460515	120484456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_120460562_120461026_120461177_120461248_120461318_120461965_120462042_120465132_120465200_120469068_120469194_120469331_120469430_120471056_120471159_120472252_120472343_120474352_120474455_120474893_120475051_120475762_120475934_120476511_120476610_120476699_120476751_120477898_120478066_120479526_120479596_120479682_120479800_120480940_120481089_120482276_120482376_120482713_120482856_120484106
transcript_134598.known	chr8	-	3085	8	FSM	ENSMUSG00000034105.10	ENSMUST00000049156.7	3085	8	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_5	4.74664220738176	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGGTAGCAGGCTTGG	NA	False	NA	NA	False	AATAAA	-20	NA	120505155	120486814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120488570_120489030_120489211_120490674_120490794_120494804_120495234_120497979_120498125_120499112_120499344_120500010_120500180_120505098
transcript_1346.nic	chr1	+	3132	24	ISM	ENSMUSG00000041763.15	ENSMUST00000188313.7	4631	29	-32	12416	-24	0	5prime_fragment	FALSE	canonical	3	286	junction_23	36.0920373584054	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGATTCAGAAAAAGAGAAAG	3280	False	NA	NA	False	NA	NA	NA	43973142	44029744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670
transcript_13460.known	chr10	+	2796	3	FSM	ENSMUSG00000019960.9	ENSMUST00000020118.5	2796	3	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGTGTTTTTATTTTTAAG	NA	False	NA	9	True	AATAAA	-19	NA	99099092	99103350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_99099954_99100405_99100844_99101853
transcript_134604.known	chr8	-	1596	4	FSM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	12.9185482500507	323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGAGTTGGGTTGTCT	NA	False	NA	NA	False	AGTAAA	-14	NA	120567283	120535960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120537095_120549392_120549551_120566880_120566964_120567062
transcript_13461.nnic	chr10	+	1182	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-6099	203	multi-exon	FALSE	canonical	2	11	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTTATTTTGTGGATAAA	NA	False	NA	NA	False	AATACA	-13	NA	100185997	100193182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr10_+_100186070_100192072
transcript_134611.known	chr8	+	2181	5	FSM	ENSMUSG00000031828.10	ENSMUST00000034287.10	2181	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	6.86931583201704	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTGTTTGAATACTTACA	NA	False	NA	NA	False	ATTAAA	-24	NA	120589010	120603734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120589187_120591741_120591819_120596360_120597432_120601113_120601272_120603035
transcript_134615.nnic	chr8	+	1157	4	NIC	ENSMUSG00000031828.10	novel	2181	5	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	7.03957069398096	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTGTTTGAATACTTACA	NA	False	NA	NA	False	ATTAAA	-24	NA	120588963	120603734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_120589187_120591741_120591819_120601113_120601272_120603035
transcript_134616.known	chr8	+	1354	3	FSM	ENSMUSG00000031828.10	ENSMUST00000212636.2	1354	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCTTGAGGCCTCTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	120589004	120597455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120589187_120591741_120591819_120596360
transcript_13462.nnic	chr10	+	1270	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-6099	291	multi-exon	FALSE	canonical	2	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTCTAGAGTCATAA	NA	False	NA	NA	False	AATAAA	-18	NA	100185997	100193270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr10_+_100186070_100192072
transcript_134645.known	chr8	+	3726	14	FSM	ENSMUSG00000031826.21	ENSMUST00000144458.8	3726	14	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_3	215.032734538435	2085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCTGTGTTTCTTGGT	8373	False	NA	34	True	AATAAA	-16	NA	120637098	120684294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
transcript_134658.known	chr8	+	3274	14	FSM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_3	231.479471146212	1747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8827	False	NA	39	True	AATAAA	-21	NA	120637552	120684299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
transcript_13466.known	chr10	-	5993	14	FSM	ENSMUSG00000036676.15	ENSMUST00000058154.15	5993	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_8	14.4496677957759	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGATTGTCTTGTGATGT	NA	False	NA	1	True	ATTAAA	-23	NA	100323212	100279763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_100283606_100284685_100284913_100286100_100286271_100287243_100287348_100292909_100293022_100294776_100294898_100296821_100296971_100301882_100302136_100307190_100307364_100307776_100307893_100310236_100310337_100312418_100312638_100313666_100313885_100323023
transcript_1347.nic	chr1	+	2931	22	ISM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	-17	19696	-17	5923	5prime_fragment	FALSE	canonical	3	307	junction_13	33.7718099513824	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATCAGCCATTCTTTGT	3287	False	NA	NA	False	AAGAAA	-28	NA	43973149	44022435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231
transcript_13470.known	chr10	+	8211	54	FSM	ENSMUSG00000019971.11	ENSMUST00000220346.2	8211	54	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	9.96476526636793	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTCATAATTGTTCAGGT	NA	False	NA	NA	False	ATTAAA	-22	NA	100323419	100409517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_100323615_100324140_100324271_100324423_100324502_100325181_100325252_100326008_100326056_100328509_100328654_100330762_100330817_100331502_100331524_100331684_100331838_100332550_100332734_100333801_100333892_100334923_100335047_100336008_100336133_100336964_100337138_100344525_100344689_100346348_100346450_100346523_100346612_100348148_100348262_100349781_100349867_100350319_100350463_100350995_100351161_100352015_100352166_100353638_100353755_100354315_100354419_100354506_100354738_100359091_100359266_100364410_100364523_100365879_100366086_100366962_100367115_100372667_100372780_100373297_100373754_100374787_100374953_100375845_100375954_100376197_100376333_100377411_100377679_100378278_100378387_100379103_100379304_100380778_100380993_100382236_100382375_100384589_100384812_100385114_100385238_100387225_100387372_100387678_100387835_100390272_100390397_100393932_100394068_100395466_100395554_100397101_100397267_100397970_100398094_100399127_100399301_100402872_100403015_100403942_100404017_100404676_100404772_100407924_100408005_100408741
transcript_134737.known	chr8	+	2898	15	FSM	ENSMUSG00000031825.17	ENSMUST00000034282.16	2898	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	1.54523626091314	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120719246	120778315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120719340_120737172_120737491_120740748_120740868_120742012_120742146_120742404_120742521_120745591_120745693_120750303_120750442_120752800_120752862_120755535_120755603_120756004_120756136_120757123_120757168_120757806_120757880_120760298_120760375_120766764_120766899_120777021
transcript_134739.known	chr8	+	4182	15	FSM	ENSMUSG00000031825.17	ENSMUST00000132583.8	4182	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.49318178288335	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGGTAGCACATCTTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	120719176	120779532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_120719340_120737172_120737491_120740748_120740868_120742012_120742146_120742404_120742521_120745591_120745693_120750306_120750442_120752800_120752862_120755535_120755603_120756004_120756136_120757123_120757168_120757806_120757880_120760298_120760375_120766764_120766899_120777021
transcript_13474.known	chr10	-	2564	7	FSM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	5.07991688470939	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTGAAATAAATCCATGAA	NA	False	NA	69	True	AATAAA	-25	NA	100425257	100408126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
transcript_134742.nic	chr8	-	3124	8	NIC	ENSMUSG00000031823.15	novel	3069	8	NA	NA	-24	-207	combination_of_known_junctions	FALSE	canonical	3	5	junction_7	30.1465806772611	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCACCCTCCTGCAGCCC	NA	False	NA	-8	True	AATAAA	-16	NA	120828245	120807835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_120809456_120809968_120810100_120811582_120811665_120812083_120812181_120813367_120813493_120814492_120814824_120819655_120819741_120827592
transcript_134743.known	chr8	-	3069	8	FSM	ENSMUSG00000031823.15	ENSMUST00000034280.9	3069	8	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	9.07114735222145	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTGACCTCCTTCAGC	NA	False	NA	NA	False	AATAAA	-19	NA	120828221	120807628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_120809456_120809968_120810100_120811582_120811665_120812083_120812181_120813367_120813493_120814492_120814824_120819655_120819741_120827830
transcript_134747.known	chr8	+	7127	16	FSM	ENSMUSG00000031822.21	ENSMUST00000034279.16	7127	16	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	28.9916463064027	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCTTTTTGTATCACCA	NA	False	NA	21	True	AATAAA	-28	NA	121215185	121308129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_121215891_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
transcript_134753.known	chr8	+	4610	16	FSM	ENSMUSG00000031822.21	ENSMUST00000120493.8	4610	16	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	28.9916463064027	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTGTACTGCTGCTGG	NA	False	NA	NA	False	AAAAAG	-15	NA	121262595	121306219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_121262694_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
transcript_134757.known	chr8	+	4492	16	FSM	ENSMUSG00000031822.21	ENSMUST00000118136.2	4492	16	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	22.7797180745407	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTACTTTAATTATTGT	NA	False	NA	13	True	ATTAAA	-19	NA	121264167	121306065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_121264302_121280322_121280542_121289364_121289565_121293106_121293280_121293665_121293864_121294501_121294694_121294899_121295223_121295790_121296116_121297455_121298079_121299042_121299156_121299374_121299646_121300909_121301018_121301672_121302045_121303014_121303294_121304709_121304814_121305207
transcript_134772.known	chr8	-	3900	5	FSM	ENSMUSG00000031821.12	ENSMUST00000034278.6	3900	5	0	0	0	0	multi-exon	FALSE	canonical	3	1091	junction_3	31.7125763696361	843	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTTCAGCCTAGTGCAA	NA	False	NA	NA	False	AATAAA	-21	NA	121316043	121305371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_121308551_121308820_121308948_121312831_121312932_121315463_121315579_121315664
transcript_134778.known	chr8	+	2538	2	FSM	ENSMUSG00000097773.2	ENSMUST00000181414.2	2538	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAGAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	121316269	121320540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_121316794_121318526
transcript_134779.known	chr8	-	1863	7	FSM	ENSMUSG00000031819.14	ENSMUST00000180417.8	1863	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	606.070792528031	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTTTTGTAATCCTGAG	NA	False	NA	-40	True	ATTAAA	-11	NA	121395312	121384589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121386697_121386927_121387232_121387410_121387522_121387600_121394495
transcript_134780.known	chr8	+	611	6	FSM	ENSMUSG00000031818.13	ENSMUST00000181847.8	611	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	4257.36254505063	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACCCCATTCAGGGCTTC	NA	False	NA	NA	False	NA	NA	NA	121395074	121400784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_121395095_121396047_121396122_121397741_121397884_121399463_121399632_121399959_121400092_121400709
transcript_134791.known	chr8	+	745	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	0	0	0	0	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	6235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121394960	121400946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
transcript_134793.known	chr8	+	765	5	FSM	ENSMUSG00000031818.13	ENSMUST00000181586.8	765	5	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_1	3735.25865904893	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121394960	121400946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_121395115_121396047_121396122_121399463_121399632_121399959_121400092_121400709
transcript_134797.known	chr8	-	4942	5	FSM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	0	0	0	0	multi-exon	FALSE	canonical	3	1135	junction_3	55.4301362076623	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTCTCTGTGTTCATC	NA	False	NA	0	True	AATAAA	-23	NA	121394860	121380652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387522_121387600_121394495
transcript_134798.known	chr8	-	470	5	FSM	ENSMUSG00000031819.14	ENSMUST00000181836.2	470	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	531.102332418151	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTTATAGAGGAATAGTA	NA	False	NA	NA	False	NA	NA	NA	121394575	121384788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387573_121387600_121394495
transcript_134800.known	chr8	-	3380	5	FSM	ENSMUSG00000031819.14	ENSMUST00000181402.2	3380	5	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_2	585.327419057061	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACTAGGATTTTGAAG	NA	False	NA	NA	False	AATACA	-18	NA	121394751	121382716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_121384988_121385266_121385814_121386697_121386927_121387522_121387600_121394495
transcript_134804.known	chr8	-	844	4	FSM	ENSMUSG00000043687.17	ENSMUST00000123927.9	844	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	5.09901951359278	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCGGGTCCTGGTTTTTG	NA	False	NA	-1	True	AATAAA	-13	NA	121361231	121335340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_121335770_121337932_121338077_121355210_121355257_121361006
transcript_134809.known	chr8	+	2847	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	7.56637297521078	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTTTGTTTCTTTTTT	NA	False	NA	18	True	ATTAAA	-22	NA	121463096	121483433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
transcript_13481.known	chr10	-	562	5	FSM	ENSMUSG00000046567.11	ENSMUST00000218821.2	562	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	25.5477494116409	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGAAGCCAGTGCCTGATG	NA	False	NA	NA	False	AATAGA	-10	NA	100425097	100414214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_100414294_100418124_100418185_100419775_100419872_100422052_100422171_100424888
transcript_134813.nnic	chr8	+	2593	7	NNC	ENSMUSG00000041515.11	novel	764	4	NA	NA	-794	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	15.0489940601431	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTTTGTTTCTTTTTT	NA	False	NA	18	True	ATTAAA	-22	NA	121471424	121483433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_121471582_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
transcript_134814.known	chr8	-	1060	10	FSM	ENSMUSG00000031816.16	ENSMUST00000133037.8	1060	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	18.6494629717802	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACGCAGGCTCAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	121835131	121824589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
transcript_134818.known	chr8	-	1520	9	FSM	ENSMUSG00000031816.16	ENSMUST00000116415.9	1520	9	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	25.939533052852	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGTATGTTTGTGTAAA	NA	False	NA	-7	True	NA	NA	NA	121835066	121824291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832456_121832571_121833608_121833713_121835026
transcript_13482.nic	chr10	+	3738	12	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	31.6193789307593	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	103203603	103255236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
transcript_134823.known	chr8	-	2415	8	FSM	ENSMUSG00000031816.16	ENSMUST00000128052.8	2415	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_7	31.0733168555943	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTATGTTTGTGTA	NA	False	NA	-9	True	NA	NA	NA	121835034	121824293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831298_121832312_121832427_121833608_121833713_121834932
transcript_134828.nic	chr8	-	1983	8	NIC	ENSMUSG00000031816.16	novel	1060	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	48	junction_5	13.1413042560859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTGCAGGACTCAGCC	NA	False	NA	NA	False	ATTAAA	-23	NA	121835131	121824675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
transcript_13483.known	chr10	+	3543	12	FSM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	32.2574867983458	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	103203668	103255236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
transcript_134836.nic	chr8	-	819	5	NIC	ENSMUSG00000031816.16	novel	358	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	34.8595395838786	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTGCGGCTTACAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	121835131	121830590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_121830920_121831130_121831298_121832312_121832427_121833608_121833713_121835026
transcript_134837.known	chr8	+	2725	1	FSM	ENSMUSG00000046714.8	ENSMUST00000054691.8	2725	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGGACAGTGTCTTTGTG	NA	False	NA	NA	False	AATAAA	-24	NA	121842909	121845634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_121842900_121845600
transcript_134838.known	chr8	-	959	7	FSM	ENSMUSG00000031809.11	ENSMUST00000183280.2	959	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	3.09569593683445	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTGTTGTGAATGCAGC	NA	False	NA	NA	False	GGGGCT	-18	NA	122268608	122257566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_122257781_122258436_122258654_122260433_122260471_122262161_122262309_122266605_122266747_122267267_122267320_122268457
transcript_134839.known	chr8	+	1402	1	FSM	ENSMUSG00000098211.3	ENSMUST00000182145.3	1402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAGGGTCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	122268818	122270220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_122268800_122270200
transcript_134840.known	chr8	-	1084	7	FSM	ENSMUSG00000031809.11	ENSMUST00000034265.11	1084	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	4.45034330760623	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGCCACTGACAAAAACG	NA	False	NA	NA	False	AATAAA	-22	NA	122268693	122257518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_122257781_122258436_122258654_122260433_122260471_122262161_122262309_122266605_122266747_122267275_122267320_122268457
transcript_134841.known	chr8	-	4358	9	FSM	ENSMUSG00000052934.15	ENSMUST00000059018.14	4358	9	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	20.0962527601541	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGACTTGTTTCTCGGGTG	NA	False	NA	NA	False	AGTAAA	-21	NA	122305545	122276178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_122279185_122280843_122281191_122281944_122282099_122282980_122283091_122285758_122285834_122286661_122286830_122287124_122287202_122293013_122293086_122305196
transcript_134843.nnic	chr8	-	1684	8	NIC	ENSMUSG00000052934.15	novel	4358	9	NA	NA	10	1983	combination_of_known_splicesites	FALSE	canonical	3	13	junction_7	107.929493236113	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGAGCTGAATGACCGGT	NA	False	NA	-20	True	AATAAA	-15	NA	122305519	122278754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_122279185_122280843_122281191_122281944_122282099_122282980_122283091_122285758_122285834_122286661_122286830_122287124_122287202_122305196
transcript_134856.known	chr8	+	2532	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	0	0	0	0	multi-exon	FALSE	canonical	3	2350	junction_2	129.422649571944	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGTACAATTTGTCC	9845	False	NA	NA	False	ATTAAA	-20	NA	122317099	122325499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
transcript_134858.known	chr8	+	766	4	FSM	ENSMUSG00000031812.17	ENSMUST00000181948.2	766	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1182.02096240107	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGCCAATAAAAAGATCAA	9968	False	NA	-7	True	AATAAA	-19	NA	122317222	122323751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_122317304_122320228_122320390_122322724_122322832_122323334
transcript_13486.nnic	chr10	+	3320	12	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	355	0	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	33.5120553120764	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	103204058	103255236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_103204182_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
transcript_134863.known	chr8	+	4138	3	FSM	ENSMUSG00000031812.17	ENSMUST00000180548.2	4138	3	0	0	0	0	multi-exon	FALSE	canonical	3	2370	junction_1	132	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGTGATGTCTCATTG	9965	False	NA	16	True	AATAAA	-16	NA	122317219	122324785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_122317304_122320228_122322832_122323334
transcript_134866.known	chr8	-	2078	12	FSM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	29.2453287927892	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCAAGATGACAATGTGC	436	False	NA	-5	True	AATAAA	-37	NA	122556308	122523051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556120
transcript_134867.nnic	chr8	-	2057	12	NNC	ENSMUSG00000040263.17	novel	2078	12	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	53.7922234694303	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGTTTTCTTTCTTCTAC	414	False	NA	-25	True	AATAAA	-17	NA	122556330	122523071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548041_122548098_122548520_122548613_122556120
transcript_134876.known	chr8	-	2834	11	FSM	ENSMUSG00000040263.17	ENSMUST00000174709.8	2834	11	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_4	30.3809150619266	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGTTTTCTTTCTTCTAC	465	False	NA	-25	True	AATAAA	-17	NA	122556279	122523071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_122523483_122523656_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556120
transcript_134880.known	chr8	+	599	3	FSM	ENSMUSG00000097812.2	ENSMUST00000181776.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	2125	False	NA	NA	False	AAGAAA	-26	NA	122576932	122587360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_122577154_122586834_122586957_122587104
transcript_134890.known	chr8	-	3517	10	FSM	ENSMUSG00000040010.11	ENSMUST00000045557.10	3517	10	0	0	0	0	multi-exon	FALSE	canonical	3	2143	junction_1	128.439734631066	2419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGACTGTGTTCTGTG	NA	False	NA	NA	False	TTTAAA	-18	NA	122634433	122607888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_122609835_122610329_122610508_122611721_122611872_122612647_122612745_122613018_122613123_122613596_122613721_122614235_122614281_122615060_122615167_122623166_122623305_122633804
transcript_13490.nic	chr10	+	1639	5	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-160	-1791	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	32.0341614530488	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATTTAGTATCATTTAT	NA	False	NA	-1	True	ATTAAA	-12	NA	103203483	103231228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850
transcript_134916.nic	chr8	-	1547	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20904	-712	3474	712	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCCCCAACTGACT	NA	False	NA	NA	False	AATAAA	-18	NA	122650739	122642152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
transcript_134917.nic	chr8	-	835	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20904	0	3474	0	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGAGAGACCTGCTTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	122650739	122642864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
transcript_134919.known	chr8	+	1992	1	FSM	ENSMUSG00000074052.8	ENSMUST00000181944.2	1992	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGTTGGTGTGTATTATC	NA	False	NA	NA	False	NA	NA	NA	122634571	122636563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_122634600_122636600
transcript_13492.nic	chr10	+	1426	5	ISM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-102	24008	-77	-1791	5prime_fragment	FALSE	canonical	3	31	junction_1	35.7596140918774	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATTTAGTATCATTTAT	NA	False	NA	-1	True	ATTAAA	-12	NA	103203566	103231228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850
transcript_134935.known	chr8	+	1970	13	FSM	ENSMUSG00000025316.17	ENSMUST00000026354.15	1970	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	72.3410134171635	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	TTTAAA	-45	NA	122677318	122752676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_134936.known	chr8	+	2289	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677230	122752916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_134937.nnic	chr8	+	3204	11	NNC	ENSMUSG00000049577.16	novel	3390	10	NA	NA	-20	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	17.0129362545094	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGCTGGAGGCCCAGCCTG	NA	False	NA	10	True	AATAAA	-19	NA	123008859	123063990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_123008997_123009202_123009262_123032096_123032220_123034230_123034381_123050438_123050573_123058828_123058929_123060459_123060667_123061190_123061422_123061670_123061767_123061851_123061999_123062170
transcript_134943.known	chr8	+	3810	19	FSM	ENSMUSG00000017478.16	ENSMUST00000017622.12	3810	19	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	72.8266375428831	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCTGGTCCTGGTAATG	905	False	NA	14	True	AATAAA	-15	NA	123103347	123144098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123114431_123114504_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
transcript_134957.known	chr8	+	3705	18	FSM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_3	41.8252254144417	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGGTCCTGGTAATGT	939	False	NA	15	True	AATAAA	-16	NA	123103381	123144099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
transcript_13496.nnic	chr10	+	1101	5	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	355	-1791	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	41.1969355656461	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATTTAGTATCATTTAT	NA	False	NA	-1	True	ATTAAA	-12	NA	103204058	103231228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_103204182_103224887_103225203_103229251_103229410_103229761_103229889_103230850
transcript_13497.known	chr10	+	1246	2	FSM	ENSMUSG00000094144.9	ENSMUST00000180889.8	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104012884	104015352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_104012991_104014212
transcript_13498.known	chr10	+	1185	2	FSM	ENSMUSG00000094144.9	ENSMUST00000181239.2	1185	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104013299	104015352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_104013345_104014212
transcript_13499.known	chr10	+	1197	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181036.2	1197	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104030317	104032383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_104030363_104031231
transcript_134990.known	chr8	+	2895	4	FSM	ENSMUSG00000017478.16	ENSMUST00000177386.2	2895	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	80.3920946915111	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAAAACAATAA	944	False	NA	NA	False	NA	NA	NA	123103386	123116483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123114431
transcript_134991.known	chr8	+	512	3	FSM	ENSMUSG00000017478.16	ENSMUST00000176699.2	512	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTGACCTCAGGGACGA	940	False	NA	NA	False	NA	NA	NA	123103382	123110464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123103540_123105447_123105477_123110138
transcript_134994.known	chr8	-	744	6	FSM	ENSMUSG00000006519.12	ENSMUST00000017604.10	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_1	96.6531944635044	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159669	123151514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123151827_123152924_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
transcript_134995.known	chr8	-	638	5	FSM	ENSMUSG00000006519.12	ENSMUST00000212600.2	638	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	360.755110843908	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159647	123151514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123151827_123152924_123153007_123153967_123154043_123154393_123154464_123159548
transcript_135001.known	chr8	-	1756	10	FSM	ENSMUSG00000006517.6	ENSMUST00000006692.6	1756	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	22.2211110833319	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	False	NA	-8	True	AATAAA	-17	NA	123170161	123160339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123160915_123161542_123161652_123163212_123163329_123163748_123163968_123164153_123164229_123164565_123164766_123166115_123166263_123166376_123166492_123166920_123166992_123170032
transcript_135007.known	chr8	-	1628	3	FSM	ENSMUSG00000006587.7	ENSMUST00000006762.7	1628	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTTGACGTCTCGAG	NA	False	NA	NA	False	AATAAA	-27	NA	123187472	123180946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123181774_123182861_123183468_123187277
transcript_135008.known	chr8	-	1783	6	FSM	ENSMUSG00000014470.5	ENSMUST00000014614.4	1783	6	0	0	0	0	multi-exon	TRUE	canonical	3	110	junction_3	7.81280999384984	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCGAGCCTTGGTCCTGGG	9981	False	NA	-5	True	AATAAA	-17	NA	123202803	123192885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123193974_123194700_123194809_123194978_123195094_123195352_123195466_123196938_123197096_123202601
transcript_13501.known	chr10	+	1258	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181615.8	1258	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104029902	104032383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_104030009_104031231
transcript_135014.known	chr8	-	8219	51	FSM	ENSMUSG00000014444.18	ENSMUST00000156333.9	8219	51	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_46	25.1307699842245	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTGTCCTCGCCTTCC	6111	False	NA	2	True	AGTAAA	-38	NA	123278068	123208436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123208971_123209048_123209266_123209387_123209468_123209607_123209731_123209795_123209969_123210057_123210151_123210224_123210414_123211467_123211616_123211700_123211860_123211995_123212211_123212328_123212477_123212562_123212696_123213045_123213359_123213493_123213683_123213748_123214008_123214213_123214421_123214576_123214684_123214813_123214987_123215072_123215130_123215199_123215294_123215837_123215939_123216293_123216366_123216801_123216903_123216977_123217068_123217593_123217766_123217857_123217955_123218053_123218298_123218397_123218552_123219345_123219451_123221528_123221734_123222155_123222357_123222472_123222599_123223141_123223319_123223478_123223640_123224190_123224304_123224544_123224728_123224889_123225039_123225131_123225311_123225398_123225511_123226366_123226625_123226942_123227044_123227900_123227989_123228068_123228156_123228244_123228417_123228504_123228719_123228860_123229051_123232767_123232907_123233004_123233048_123234361_123234485_123240452_123240549_123277713
transcript_13502.known	chr10	-	5629	12	FSM	ENSMUSG00000036019.9	ENSMUST00000061506.9	5629	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.642824346533225	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTGTGTGGGGCCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	105410296	105023523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_105026136_105079449_105079514_105090655_105090771_105107359_105107442_105139454_105139577_105157256_105157336_105158722_105158908_105159412_105159499_105184295_105184411_105205810_105206640_105249077_105249649_105409527
transcript_135021.known	chr8	+	3066	15	FSM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	16.7624458787116	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCCGTTGTACAGCTC	8862	False	NA	NA	False	NA	NA	NA	123202881	123209831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
transcript_135024.known	chr8	+	3999	15	FSM	ENSMUSG00000049482.17	ENSMUST00000151855.8	3999	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_11	35.9174222974004	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACGCAGGGTGTGATCTG	8928	False	NA	NA	False	NA	NA	NA	123202947	123210877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207871_123207964_123208069_123208137_123208209_123208269_123208334
transcript_135026.nic	chr8	+	1731	15	NIC	ENSMUSG00000049482.17	novel	3066	15	NA	NA	8	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_4	37.5312794716022	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACCCTACAGTACTTG	8870	False	NA	11	True	AATAAA	-13	NA	123202889	123208480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123204000_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
transcript_135029.nic	chr8	+	1831	14	NIC	ENSMUSG00000049482.17	novel	3066	15	NA	NA	-43	0	intron_retention	FALSE	canonical	3	114	junction_5	17.332119514471	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACCCTACAGTACTTG	8819	False	NA	11	True	AATAAA	-13	NA	123202838	123208480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208269_123208334
transcript_135034.nic	chr8	+	1778	14	NIC	ENSMUSG00000049482.17	novel	3066	15	NA	NA	17	0	intron_retention	FALSE	canonical	3	114	junction_5	16.978928813934	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACCCTACAGTACTTG	8879	False	NA	11	True	AATAAA	-13	NA	123202898	123208480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207964_123208069_123208137_123208209_123208269_123208334
transcript_13505.known	chr10	-	2033	12	FSM	ENSMUSG00000036009.17	ENSMUST00000046638.10	2033	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_11	25.2121576340063	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCAATGTTCTTGAGTG	NA	False	NA	NA	False	AATAAA	-22	NA	105677239	105599049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936
transcript_135060.known	chr8	+	2189	10	FSM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	0	0	0	0	multi-exon	FALSE	canonical	3	858	junction_2	66.8792905627208	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGAACCTGTCACCGTA	2586	False	NA	27	True	AATAAA	-36	NA	123294753	123299867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
transcript_135067.known	chr8	+	2696	9	FSM	ENSMUSG00000006585.4	ENSMUST00000212967.2	2696	9	0	0	0	0	multi-exon	FALSE	canonical	3	858	junction_2	70.7626976238187	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGACTGTCTCTGATCATG	2597	False	NA	NA	False	NA	NA	NA	123294764	123300293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
transcript_13508.nnic	chr10	-	1890	12	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	39.2127066604228	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105677246	105599115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661942_105662453_105665708_105665816_105668711_105668877_105676936
transcript_135083.known	chr8	-	554	6	FSM	ENSMUSG00000006589.9	ENSMUST00000212834.2	554	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	691.248030738605	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGAGTGTGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	123303309	123301720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302619_123302746_123302857_123302971_123303253
transcript_135087.known	chr8	-	660	6	FSM	ENSMUSG00000006589.9	ENSMUST00000213030.2	660	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	634.519030447472	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAGCTGGCTAGATGGT	NA	False	NA	NA	False	NA	NA	NA	123303557	123301626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123302992_123303253_123303361_123303491
transcript_135089.known	chr8	-	723	5	FSM	ENSMUSG00000006589.9	ENSMUST00000212093.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	642.508171154266	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCAGGAACTGCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	123303471	123301587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123302971_123303253
transcript_135090.known	chr8	-	929	5	FSM	ENSMUSG00000006589.9	ENSMUST00000213029.2	929	5	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_3	493.303152229945	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTCTTCTCTCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	123303592	123301654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123303361_123303491
transcript_135091.known	chr8	-	849	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	1391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCTTCTCCTCAGTTT	NA	False	NA	-7	True	AATAAA	-15	NA	123303629	123301375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
transcript_135097.known	chr8	-	560	3	FSM	ENSMUSG00000006589.9	ENSMUST00000213062.2	560	3	0	0	0	0	multi-exon	FALSE	canonical	3	1410	junction_2	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTCTCCTCAGTTTGT	NA	False	NA	-5	True	AATAAA	-17	NA	123302228	123301373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123301767_123301875_123301955_123302140
transcript_135100.known	chr8	-	2557	14	FSM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	4.2966892442366	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATCCTGGTCTTTTGTT	NA	False	NA	-4	True	NA	NA	NA	123338202	123304980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
transcript_135102.known	chr8	-	2111	12	FSM	ENSMUSG00000015027.12	ENSMUST00000212319.2	2111	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.65191204724608	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGGGTTGGTTTGAGA	NA	False	NA	NA	False	AATAAA	-38	NA	123338143	123305127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
transcript_135105.known	chr8	+	1659	5	FSM	ENSMUSG00000015013.10	ENSMUST00000015157.10	1659	5	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	75.9884859699152	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGAGTGAGCCTCAGGT	5522	False	NA	NA	False	NA	NA	NA	123338384	123343399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123341046_123341127_123342129
transcript_135109.known	chr8	-	2867	12	FSM	ENSMUSG00000006362.17	ENSMUST00000064674.13	2867	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.962091385841669	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAACACACCTGTAAA	NA	False	NA	NA	False	NA	NA	NA	123404914	123356676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123357716_123360056_123360248_123361098_123361168_123361687_123361887_123362492_123362579_123364732_123364963_123365595_123365778_123369702_123369793_123370030_123370273_123374439_123374518_123377068_123377216_123404600
transcript_135110.known	chr8	+	2171	10	FSM	ENSMUSG00000015016.9	ENSMUST00000212790.2	2171	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	7.64489662745314	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGACCTGTGAGCTGTG	9607	False	NA	13	True	AATAAA	-25	NA	123502316	123544619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123502368_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
transcript_135111.known	chr8	+	2206	10	FSM	ENSMUSG00000015016.9	ENSMUST00000015160.6	2206	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	8.97458689169274	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGACCTGTGAGCTGTG	9534	False	NA	13	True	AATAAA	-25	NA	123502243	123544619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123502330_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
transcript_135114.known	chr8	-	4257	6	FSM	ENSMUSG00000035569.18	ENSMUST00000212337.2	4257	6	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_4	85.1835664902568	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAGCGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	123630464	123622425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123622896_123623298_123623447_123625312_123625456_123626342_123626544_123626717_123626889_123627340
transcript_135115.nic	chr8	-	5850	5	ISM	ENSMUSG00000035569.18	ENSMUST00000098333.5	7995	13	21835	-814	5628	485	3prime_fragment	FALSE	canonical	3	382	junction_1	9.9373034571759	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTTGTACATGGCACT	NA	False	NA	NA	False	NA	NA	NA	123620891	123610075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_123611076_123612388_123612482_123614052_123614197_123614266_123614366_123616377
transcript_135118.known	chr8	+	2137	1	FSM	ENSMUSG00000099881.2	ENSMUST00000186531.2	2137	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGTTTTACCTGCTGCT	NA	False	NA	9	True	NA	NA	NA	123769204	123771341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123769200_123771300
transcript_135120.nnic	chr8	+	2703	18	NNC	ENSMUSG00000000738.19	novel	2896	17	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	79.4584176686668	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTTGAGCTCTCCATGT	NA	False	NA	11	True	AGTAAA	-11	NA	123792234	123824490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_123792449_123792965_123793099_123793211_123793315_123797114_123797205_123800487_123800730_123803589_123803730_123804556_123804660_123806152_123806279_123806707_123806871_123807375_123807550_123814066_123814192_123815683_123815787_123816862_123816974_123818373_123818490_123820329_123820487_123821212_123821380_123821896_123821975_123824132
transcript_135125.known	chr8	+	2896	17	FSM	ENSMUSG00000000738.19	ENSMUST00000149248.9	2896	17	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	27.3615120881504	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCCATGTGTATTGCTT	NA	False	NA	20	True	AGTAAA	-20	NA	123791917	123824499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123792449_123793211_123793315_123797114_123797205_123800487_123800730_123803589_123803730_123804556_123804660_123806152_123806279_123806707_123806871_123807375_123807550_123814066_123814192_123815683_123815787_123816862_123816974_123818373_123818490_123820329_123820487_123821212_123821380_123821896_123821975_123824132
transcript_135144.known	chr8	+	845	3	FSM	ENSMUSG00000000738.19	ENSMUST00000108868.11	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_2	16	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGGCATTTGTGGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	123792021	123797429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123792449_123793211_123793315_123797114
transcript_135145.known	chr8	+	780	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	0	0	0	0	multi-exon	FALSE	canonical	3	17818	junction_5	2681.35350895774	3273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
transcript_135158.known	chr8	+	1969	3	FSM	ENSMUSG00000000740.13	ENSMUST00000129311.2	1969	3	0	0	0	0	multi-exon	FALSE	canonical	3	21322	junction_2	2171	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829391	123831983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123829502_123829583_123830096_123830636
transcript_135159.known	chr8	+	2398	15	FSM	ENSMUSG00000034796.15	ENSMUST00000037900.9	2398	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.77919490864276	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTGTGCCTTTCTTGC	NA	False	NA	4	True	AATAAA	-16	NA	123844116	123861921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123844404_123846357_123846541_123850886_123850962_123851140_123851216_123852300_123852385_123852979_123853070_123853371_123853474_123854091_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
transcript_135162.nic	chr8	+	2343	9	NIC	ENSMUSG00000034796.15	novel	3018	14	NA	NA	-93	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	6.93609219950254	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACAGCCTGTGCCTTTCTT	NA	False	NA	2	True	AATAAA	-14	NA	123853162	123861919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_123853474_123853559_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
transcript_135164.nic	chr8	+	2765	8	NIC	ENSMUSG00000034796.15	novel	3018	14	NA	NA	-429	0	intron_retention	FALSE	canonical	3	10	junction_1	4.85293935756087	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACAGCCTGTGCCTTTCTT	NA	False	NA	2	True	AATAAA	-14	NA	123852826	123861919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
transcript_135169.known	chr8	+	3542	12	FSM	ENSMUSG00000034796.15	ENSMUST00000131659.8	3542	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.2610553160163	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTGTGCCTTTCTTGC	NA	False	NA	4	True	AATAAA	-16	NA	123844185	123861921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123844404_123846357_123846541_123850886_123850962_123851140_123851216_123852300_123852385_123852979_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
transcript_13517.known	chr10	+	1813	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAATAGAAGCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	105676927	105683694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
transcript_135177.known	chr8	-	3805	7	FSM	ENSMUSG00000000739.15	ENSMUST00000000755.15	3805	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	18.7764628073435	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	9743	False	NA	NA	False	NA	NA	NA	123885009	123866930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884327_123884926
transcript_135178.nic	chr8	-	1183	7	NIC	ENSMUSG00000000739.15	novel	3805	7	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	23.3380947522857	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGACTCTGTCCCAGG	9723	False	NA	-7	True	AATAAA	-16	NA	123885029	123869587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884342_123884926
transcript_135179.known	chr8	-	1053	6	FSM	ENSMUSG00000000739.15	ENSMUST00000122819.8	1053	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	38.0189426470542	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGACTCTGTCCCAGG	9743	False	NA	-7	True	AATAAA	-16	NA	123885009	123869587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123869886_123872080_123872262_123875048_123875176_123875957_123876173_123884177_123884327_123884926
transcript_135180.known	chr8	-	674	2	FSM	ENSMUSG00000000739.15	ENSMUST00000126951.2	674	2	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAATCATGCTGGGGTG	9739	False	NA	NA	False	NA	NA	NA	123885013	123883739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123884327_123884926
transcript_135181.known	chr8	-	460	2	FSM	ENSMUSG00000000739.15	ENSMUST00000152722.2	460	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAAGCCCCTCACTAGC	9698	False	NA	NA	False	NA	NA	NA	123885054	123884009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123884342_123884926
transcript_135182.known	chr8	+	1115	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212490.2	1115	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAACATGGTGGTGTGTCT	3328	False	NA	1	True	NA	NA	NA	123899583	123905504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123899783_123904588
transcript_135183.known	chr8	+	2236	11	FSM	ENSMUSG00000019278.6	ENSMUST00000019422.6	2236	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.46554469023269	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCAATGACCCCTTTGTG	NA	False	NA	NA	False	AATAAA	-27	NA	123912980	123928551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123913181_123920771_123920926_123925452_123925586_123925783_123925917_123926032_123926184_123926360_123926431_123926679_123926857_123926945_123927031_123927105_123927182_123927376_123927513_123927630
transcript_135188.known	chr8	-	2140	7	FSM	ENSMUSG00000000743.10	ENSMUST00000000759.9	2140	7	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	74.3544439380279	702	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCAGACTTTTTTTTTT	9745	False	NA	-4	True	AATAAA	-16	NA	123939499	123931002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954_123936975_123939404
transcript_135194.known	chr8	+	399	1	FSM	ENSMUSG00000069862.7	ENSMUST00000139165.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTGGCTGAAAAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	123933361	123933760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123933400_123933800
transcript_135195.known	chr8	+	491	3	FSM	ENSMUSG00000048478.8	ENSMUST00000060133.8	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGATCCTTTCCTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	123939622	123948783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123939737_123939826_123939977_123948556
transcript_135201.known	chr8	-	4485	43	FSM	ENSMUSG00000032815.17	ENSMUST00000035495.15	4485	43	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_17	20.5305065860605	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTGGCCTTATTGT	NA	False	NA	-4	True	AAGAAA	-17	NA	124045315	123995038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001075_124001136_124001206_124001313_124001870_124002044_124004998_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
transcript_135209.nnic	chr8	-	4415	42	NIC	ENSMUSG00000032815.17	novel	4485	43	NA	NA	-27	0	combination_of_known_splicesites	FALSE	canonical	2	15	junction_38	27.438124646495	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGTCTGGCCTTATTG	NA	False	NA	-5	True	AAGAAA	-16	NA	124045342	123995039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001075_124001136_124001206_124001313_124001870_124002044_124004998_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039978_124040113_124043101_124043196_124044800_124044911_124045213
transcript_135227.nic	chr8	-	3530	27	ISM	ENSMUSG00000032815.17	ENSMUST00000035495.15	4485	43	-27	17273	-27	616	5prime_fragment	FALSE	canonical	3	94	junction_1	14.5726094693285	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGGAAAGGGAGCAAGA	NA	False	NA	NA	False	NA	NA	NA	124045342	124012311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
transcript_135228.nic	chr8	-	2914	27	ISM	ENSMUSG00000032815.17	ENSMUST00000035495.15	4485	43	-27	17889	-27	0	5prime_fragment	FALSE	canonical	3	94	junction_1	14.5726094693285	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAGAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	124045342	124012927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
transcript_135244.known	chr8	-	2952	15	FSM	ENSMUSG00000001062.19	ENSMUST00000122363.8	2952	15	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_9	6.2274081482506	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCATGTGACTTGTTCGTT	2049	False	NA	NA	False	AATAAA	-18	NA	123981087	123969094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123969929_123970426_123970532_123971852_123971950_123972245_123972452_123972682_123972813_123973463_123973949_123974452_123974539_123974705_123974794_123974892_123974946_123975352_123975416_123975500_123975613_123977416_123977580_123977665_123977759_123979343_123979420_123980726
transcript_135252.known	chr8	+	1642	13	FSM	ENSMUSG00000033862.8	ENSMUST00000036880.8	1642	13	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_10	22.2279853638006	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2125	False	NA	10	True	GATAAA	-11	NA	123951580	123958989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_135254.known	chr8	+	1638	13	FSM	ENSMUSG00000033862.8	ENSMUST00000212193.2	1638	13	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_5	68.2322422970907	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2153	False	NA	10	True	GATAAA	-11	NA	123951608	123958989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954505_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_135256.known	chr8	+	1580	13	FSM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	49.2958754190788	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2149	False	NA	10	True	GATAAA	-11	NA	123951604	123958989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_135258.nic	chr8	+	1651	13	NIC	ENSMUSG00000033862.8	novel	1580	13	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_7	78.6862175564014	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2112	False	NA	10	True	GATAAA	-11	NA	123951567	123958989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955674_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_13526.known	chr10	+	4314	3	FSM	ENSMUSG00000019897.9	ENSMUST00000133538.2	4314	3	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_2	58.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAATAGAAGCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	105676927	105683694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_105677517_105678402_105681311_105682877
transcript_135269.known	chr8	+	4071	11	FSM	ENSMUSG00000001065.16	ENSMUST00000001092.15	4071	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	4.69148164229596	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGAGTTGTTACTGTT	1634	False	NA	21	True	AGTAAA	-24	NA	123980933	123996484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123981663_123982445_123982750_123983022_123983070_123983157_123983605_123985049_123985129_123986169_123986254_123991554_123991666_123991733_123991810_123992052_123992171_123994338_123994439_123994508
transcript_1353.known	chr1	+	3075	24	FSM	ENSMUSG00000041763.15	ENSMUST00000188302.7	3075	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	80.9540232183447	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTTGAAAGAAGAGTTTAC	3330	False	NA	NA	False	NA	NA	NA	43973192	44029763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011715_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670
transcript_135301.known	chr8	+	2222	4	FSM	ENSMUSG00000001065.16	ENSMUST00000150356.8	2222	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	1710	False	NA	NA	False	NA	NA	NA	123981009	123984375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_123981663_123982445_123982750_123983022_123983070_123983157
transcript_135304.known	chr8	-	2380	3	FSM	ENSMUSG00000033594.12	ENSMUST00000098327.2	2380	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCTGGAAAGGCTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	123962948	123958996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123960985_123962256_123962589_123962888
transcript_135305.nic	chr8	+	2672	2	ISM	ENSMUSG00000001065.16	ENSMUST00000150356.8	2222	4	-62	-27	14	27	intron_retention	FALSE	canonical	3	18	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGGATTGAAGATAAGGCT	1648	False	NA	NA	False	NA	NA	NA	123980947	123984402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_123981663_123982445
transcript_135306.known	chr8	-	2707	2	FSM	ENSMUSG00000033594.12	ENSMUST00000166768.3	2707	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGAAAGGCTTTTTATC	NA	False	NA	NA	False	ATTAAA	-17	NA	123962972	123958993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123960985_123962256
transcript_135307.known	chr8	-	2806	15	FSM	ENSMUSG00000001062.19	ENSMUST00000117643.9	2806	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	8.40432347433299	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCATGTGACTTGTTCG	2221	False	NA	NA	False	AATAAA	-16	NA	123980915	123969096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_123969929_123970426_123970535_123971852_123971950_123972220_123972452_123972682_123972813_123973463_123973949_123974452_123974539_123974705_123974794_123974892_123974946_123975352_123975416_123975500_123975613_123977416_123977580_123977665_123977759_123979343_123979420_123980726
transcript_135313.known	chr8	+	2330	15	FSM	ENSMUSG00000010154.8	ENSMUST00000010298.7	2330	15	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	8.26752930544105	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACATTGTCTCTTTCCC	NA	False	NA	18	True	NA	NA	NA	124059451	124096254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124059760_124073378_124073423_124080757_124081115_124083261_124083340_124083452_124083618_124084381_124084469_124084848_124084973_124086080_124086251_124086811_124087002_124087988_124088105_124089757_124089893_124090061_124090130_124093574_124093603_124095416_124095533_124095910
transcript_135317.nnic	chr8	+	2238	15	NNC	ENSMUSG00000010154.8	novel	2330	15	NA	NA	-8649	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	20.1166242552912	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACATTGTCTCTTTCCC	1205	False	NA	18	True	NA	NA	NA	124068340	124096254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_124068557_124073378_124073423_124080757_124081115_124083261_124083340_124083452_124083618_124084381_124084469_124084848_124084973_124086080_124086251_124086811_124087002_124087988_124088105_124089757_124089893_124090061_124090130_124093574_124093603_124095416_124095533_124095910
transcript_135319.nnic	chr8	+	2307	14	NIC	ENSMUSG00000010154.8	novel	2330	15	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	20.1212302140163	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACATTGTCTCTTTCCC	NA	False	NA	18	True	NA	NA	NA	124059430	124096254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_124059760_124080757_124081115_124083261_124083340_124083452_124083618_124084381_124084469_124084848_124084973_124086080_124086251_124086811_124087002_124087988_124088105_124089757_124089893_124090061_124090130_124093574_124093603_124095416_124095533_124095910
transcript_135333.known	chr8	+	2738	18	FSM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_17	92.4052680533628	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAATTGTCC	NA	False	NA	NA	False	NA	NA	NA	124100562	124128631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
transcript_135334.known	chr8	+	2582	18	FSM	ENSMUSG00000001472.18	ENSMUST00000108840.4	2582	18	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_17	99.4416940675849	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100561	124130545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129885
transcript_135336.known	chr8	+	2649	18	FSM	ENSMUSG00000001472.18	ENSMUST00000212571.2	2649	18	0	0	0	0	multi-exon	TRUE	canonical	3	129	junction_17	98.3685253625717	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100491	124130545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129888
transcript_13534.known	chr10	+	871	1	FSM	ENSMUSG00000112523.2	ENSMUST00000220086.2	871	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATCTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106018881	106019752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_106018900_106019800
transcript_135342.known	chr8	+	5002	17	FSM	ENSMUSG00000001472.18	ENSMUST00000211932.2	5002	17	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_12	41.7738984744062	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACATGGTGATATGGCC	NA	False	NA	12	True	AAGAAA	-17	NA	124100594	124130549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363
transcript_135348.known	chr8	+	1953	17	FSM	ENSMUSG00000001472.18	ENSMUST00000212569.2	1953	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	148.36315243348	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTGTCCAGATGCTGTG	NA	False	NA	-77	True	NA	NA	NA	124100611	124127970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124100804_124108138_124108301_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
transcript_13535.known	chr10	+	3355	25	FSM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_12	28.3996466625125	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCACTGGACGCCGGAG	NA	False	NA	71	True	NA	NA	NA	107998053	108113212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108088617_108088786_108089185_108089357_108095616_108095708_108096696_108096898_108097105_108097278_108098170_108098293_108100563_108100630_108103264_108103282_108104432_108104569_108105114_108105220_108107582_108107631_108109998_108110050_108113067
transcript_135355.nic	chr8	+	780	3	ISM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	-322	19311	-251	-781	5prime_fragment	FALSE	canonical	3	528	junction_1	30	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCACAGGAGAATCCTCG	NA	False	NA	NA	False	AAAAAG	-20	NA	124100240	124109320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_124100804_124108138_124108301_124109265
transcript_135357.known	chr8	+	2572	17	FSM	ENSMUSG00000001472.18	ENSMUST00000212470.2	2572	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	151.959904251089	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTGTTTTTTTTTTGTG	NA	False	NA	37	True	AAGAAA	-42	NA	124100522	124130574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124100804_124108138_124108301_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129888
transcript_13536.nic	chr10	+	2824	16	ISM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	-428	16412	-428	7463	5prime_fragment	FALSE	canonical	3	168	junction_12	22.3352238005851	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAGCAGGATAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	107997625	108096800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108088617_108088786_108089185_108089357_108095616_108095708_108096696
transcript_135360.known	chr8	+	1868	4	FSM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	7.03957069398096	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTATTGGAGATTTCT	NA	False	NA	27	True	AATAAA	-27	NA	124138162	124148754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345
transcript_135361.known	chr8	+	3242	14	FSM	ENSMUSG00000001482.16	ENSMUST00000108832.8	3242	14	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	108.849605816422	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169743	124190009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124169791_124172836_124172924_124174055_124174103_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_135364.known	chr8	+	3214	13	FSM	ENSMUSG00000001482.16	ENSMUST00000001522.10	3214	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	97.6160278278567	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169724	124190009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124169791_124172836_124172924_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_135369.known	chr8	+	3127	12	FSM	ENSMUSG00000001482.16	ENSMUST00000065534.10	3127	12	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	53.2429330273546	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169724	124190009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_135372.known	chr8	+	3191	12	FSM	ENSMUSG00000001482.16	ENSMUST00000108830.2	3191	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	79.5842502795747	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124170046	124190001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124170185_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_135375.nic	chr8	+	3204	12	NIC	ENSMUSG00000001482.16	novel	589	4	NA	NA	72	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	80.3485177058087	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124173749	124190009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_124173893_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_135378.nnic	chr8	+	2721	8	NNC	ENSMUSG00000001482.16	novel	3127	12	NA	NA	7075	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	102.321422338569	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124180995	124190009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_124181171_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_13538.nic	chr10	+	2656	15	NIC	ENSMUSG00000019907.11	novel	3355	25	NA	NA	-428	7463	combination_of_known_junctions	FALSE	canonical	3	31	junction_12	54.0060937604758	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAGCAGGATAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	107997625	108096800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108089185_108089357_108095616_108095708_108096696
transcript_135382.known	chr8	+	4227	17	FSM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	44.0414843499853	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGAGTTTTGCCT	7495	False	NA	16	True	TTTAAA	-20	NA	124204641	124230655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124226730_124226847_124227971_124228173_124228253_124228449_124228586
transcript_135390.known	chr8	+	4111	16	FSM	ENSMUSG00000031967.16	ENSMUST00000098320.6	4111	16	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_13	180.225291109643	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGAGTTTTGCCT	7495	False	NA	16	True	TTTAAA	-20	NA	124204641	124230655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124227971_124228173_124228253_124228449_124228586
transcript_1354.known	chr1	+	1389	7	FSM	ENSMUSG00000041763.15	ENSMUST00000186028.2	1389	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_5	33.8070505466932	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAGA	3312	False	NA	NA	False	AAAAAG	-23	NA	43973174	43996161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630
transcript_135400.known	chr8	+	419	3	FSM	ENSMUSG00000031967.16	ENSMUST00000133606.2	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_2	47.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAGAGAGAGAAAAAAAAAA	7532	False	NA	NA	False	NA	NA	NA	124204678	124208032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124204787_124207087_124207176_124207809
transcript_135402.known	chr8	+	1681	11	FSM	ENSMUSG00000040220.11	ENSMUST00000093043.7	1681	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	6.18789140176199	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCTGTCGTTGTGAGG	NA	False	NA	7	True	AATGAA	-21	NA	124245572	124263389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124245692_124247342_124247430_124249676_124249875_124250816_124251024_124252357_124252413_124253203_124253410_124254650_124254819_124255116_124255204_124257565_124257776_124259991_124260058_124263111
transcript_135406.known	chr8	+	3371	3	FSM	ENSMUSG00000039960.6	ENSMUST00000045487.4	3371	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTCTTGCTTATTCTACT	NA	False	NA	8	True	AATAAA	-20	NA	124380667	124390623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124380956_124382230_124382290_124387599
transcript_135407.known	chr8	+	1419	8	FSM	ENSMUSG00000019478.18	ENSMUST00000118535.9	1419	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	133.326360361884	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532723	124562026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753_124560887_124561432
transcript_135408.nic	chr8	+	1434	8	NIC	ENSMUSG00000019478.18	novel	1419	8	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	159.435483721121	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532670	124562026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124557009_124557127_124559541_124559638_124560753_124560887_124561432
transcript_135409.known	chr8	+	1080	7	FSM	ENSMUSG00000019478.18	ENSMUST00000117702.2	1080	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	143.451211218309	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCTCCAGCCCACCTGG	NA	False	NA	NA	False	NA	NA	NA	124532806	124561224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753
transcript_135417.known	chr8	-	2390	3	FSM	ENSMUSG00000031971.16	ENSMUST00000034452.12	2390	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	2	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCCTTGCTAGTGATAA	NA	False	NA	NA	False	ATTAAA	-26	NA	124586269	124567569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_124569258_124571918_124572185_124585833
transcript_135426.known	chr8	-	5808	26	FSM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	0	0	0	0	multi-exon	TRUE	canonical	3	328	junction_14	43.1434815470425	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCTTTTCACTTGTAA	NA	False	NA	NA	False	AATAAA	-17	NA	124676004	124623861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
transcript_135438.nic	chr8	-	3028	21	ISM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	-37	12836	-37	1828	5prime_fragment	FALSE	canonical	3	328	junction_9	29.7739399475447	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTCTTGGCTTGAGTAAA	NA	False	NA	NA	False	AAGAAA	-5	NA	124676041	124636697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
transcript_135442.known	chr8	-	2939	14	FSM	ENSMUSG00000039509.9	ENSMUST00000212133.2	2939	14	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	25.7454540136092	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAGAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	124675994	124646574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
transcript_135444.known	chr8	-	4306	13	FSM	ENSMUSG00000031974.9	ENSMUST00000075578.7	4306	13	0	0	0	0	multi-exon	TRUE	canonical	3	39	junction_3	9.48536885008813	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCTGTGTGTTATGA	6877	False	NA	0	True	ATTAAA	-18	NA	124709861	124679197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_124681315_124681461_124681497_124682511_124682556_124685237_124685419_124686948_124687029_124688734_124688945_124689731_124689828_124691729_124691866_124693204_124693352_124694739_124694875_124696458_124696662_124697709_124697911_124709140
transcript_135458.known	chr8	-	2912	5	FSM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_4	121.207208944023	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	4094	False	NA	36	True	ATTAAA	-15	NA	124747747	124723056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747599
transcript_13546.nic	chr10	+	1896	10	ISM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	-428	27895	-428	-3905	5prime_fragment	TRUE	canonical	3	203	junction_7	16.0831174424198	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTCCCAAAGAAGAGGAA	NA	False	NA	-5	True	AATAAA	-29	NA	107997625	108085317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295
transcript_135462.known	chr8	-	2973	5	FSM	ENSMUSG00000038697.16	ENSMUST00000165628.9	2973	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_4	173.639713199487	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	3705	False	NA	36	True	ATTAAA	-15	NA	124748136	124723056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747927
transcript_13547.nic	chr10	+	2089	10	ISM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	-428	27702	-428	-3712	5prime_fragment	FALSE	canonical	3	203	junction_7	16.0831174424198	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAATAGAGAGACGCTCTA	NA	False	NA	NA	False	AATAAA	-6	NA	107997625	108085510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295
transcript_135475.known	chr8	-	717	2	FSM	ENSMUSG00000038697.16	ENSMUST00000213055.2	717	2	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGCTGCAAGGAATTTG	3791	False	NA	NA	False	ACTAAA	-44	NA	124748050	124735978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_124736573_124747927
transcript_135478.known	chr8	+	6073	10	FSM	ENSMUSG00000031976.15	ENSMUST00000173168.8	6073	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	56.6139188050884	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAGTATTCTGCTGGGTA	NA	False	NA	20	True	AATAAA	-24	NA	124748246	124775243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124748547_124750198_124750338_124751794_124751972_124754597_124757929_124761766_124761915_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
transcript_135485.known	chr8	+	4113	16	FSM	ENSMUSG00000089704.10	ENSMUST00000034458.9	4113	16	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_3	15.1299555701778	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCGCCGCTGTCAGTCT	8565	False	NA	32	True	AATAAA	-22	NA	124958129	125072461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_124958389_125022096_125022191_125032253_125032408_125050410_125050510_125050730_125050799_125051009_125051076_125054830_125054953_125056451_125056540_125058747_125058836_125059306_125059411_125061013_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
transcript_13549.nic	chr10	+	1547	9	ISM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	-101	34221	-101	-10231	5prime_fragment	FALSE	canonical	3	203	junction_7	16.060432746349	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCCGACATTCTGGTGT	NA	False	NA	NA	False	AAAAAG	-1	NA	107997952	108078991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866
transcript_135492.nnic	chr8	-	2947	7	NNC	ENSMUSG00000050751.15	novel	3222	7	NA	NA	-10505	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	34.7690794944141	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGGCTGTTAGTATGTGAT	NA	False	NA	-6	True	AATAAA	-21	NA	125130460	125095791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848_125103030_125106922_125107058_125110933_125111362_125130195
transcript_135493.nnic	chr8	-	2762	7	NNC	ENSMUSG00000050751.15	novel	3222	7	NA	NA	18796	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	33.3066559914581	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGGCTGTTAGTATGTGAT	NA	False	NA	-6	True	AATAAA	-21	NA	125141879	125095791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848_125103030_125106922_125107058_125110933_125111362_125141799
transcript_135494.known	chr8	-	3222	7	FSM	ENSMUSG00000050751.15	ENSMUST00000140012.8	3222	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_6	10.4083299973307	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGGCTGTTAGTATGTGAT	NA	False	NA	-6	True	AATAAA	-21	NA	125161077	125095791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848_125103030_125106922_125107058_125110933_125111362_125160537
transcript_135495.nnic	chr8	-	2308	5	NNC	ENSMUSG00000050751.15	novel	3222	7	NA	NA	-1028	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	40.5732362524855	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGGCTGTTAGTATGTGAT	NA	False	NA	-6	True	AATAAA	-21	NA	125103313	125095791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848_125103030_125103124
transcript_135496.nnic	chr8	-	2185	5	NNC	ENSMUSG00000050751.15	novel	3222	7	NA	NA	-1064	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	42.292877650971	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGGCTGTTAGTATGTGAT	NA	False	NA	-6	True	AATAAA	-21	NA	125103349	125095791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848_125103030_125103283
transcript_135497.nic	chr8	-	2434	4	ISM	ENSMUSG00000050751.15	ENSMUST00000136892.3	1739	7	16611	-970	-1059	0	3prime_fragment	FALSE	canonical	3	93	junction_3	5.71547606649408	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGGCTGTTAGTATGTGAT	NA	False	NA	-6	True	AATAAA	-21	NA	125103344	125095791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848
transcript_135502.known	chr8	+	2825	18	FSM	ENSMUSG00000031979.18	ENSMUST00000034460.11	2825	18	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_7	26.4246660485719	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGAGTTATGTATCCAG	NA	False	NA	29	True	AATAAA	-19	NA	125247505	125278747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125269690_125270748_125270901_125271867_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
transcript_135512.nic	chr8	+	2787	11	ISM	ENSMUSG00000031979.18	ENSMUST00000108803.8	2101	13	-41	1381	-3	0	intron_retention	FALSE	canonical	3	176	junction_7	27.7562605550532	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAATAAAAGTAAAAAAAT	NA	False	NA	NA	False	AATAAA	-25	NA	125247502	125271132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627
transcript_135514.known	chr8	+	446	5	FSM	ENSMUSG00000031979.18	ENSMUST00000176279.2	446	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	94.8983008277809	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTGAGACTTATACAAGT	NA	False	NA	NA	False	NA	NA	NA	125247557	125256642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255716_125255796_125256636
transcript_135515.nnic	chr8	-	3338	4	NNC	ENSMUSG00000031983.8	novel	3307	4	NA	NA	-70	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	120.704413985386	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGATCTGTTTCATTTTC	NA	False	NA	-3	True	AATAAA	-19	NA	125390178	125362494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_125364704_125365829_125366316_125378109_125378161_125389586
transcript_135516.known	chr8	-	3307	4	FSM	ENSMUSG00000031983.8	ENSMUST00000034464.8	3307	4	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_2	4.10960933531265	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGATCTGTTTCATTTTC	NA	False	NA	-3	True	AATAAA	-19	NA	125390108	125362494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125364704_125365829_125366355_125378109_125378161_125389586
transcript_135522.known	chr8	-	3301	23	FSM	ENSMUSG00000037300.20	ENSMUST00000214828.2	3301	23	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	114.790718661872	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTGGTCAGTTTGGTCGT	NA	False	NA	-9	True	ATTAAA	-15	NA	125448717	125398071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_13553.known	chr10	+	1745	7	FSM	ENSMUSG00000035873.9	ENSMUST00000095313.5	1745	7	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_1	62.4179461373089	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTCCCAGTAGTAATAGAT	5598	False	NA	NA	False	NA	NA	NA	108167981	108250101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_108168110_108168548_108169173_108218590_108218723_108227558_108227594_108245323_108245472_108247824_108247930_108249528
transcript_135531.known	chr8	-	3148	21	FSM	ENSMUSG00000037300.20	ENSMUST00000118134.3	3148	21	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_17	74.4114238541368	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCGTGGTCAGTTTGGTC	NA	False	NA	-11	True	ATTAAA	-13	NA	125448722	125398073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_135536.known	chr8	-	2970	20	FSM	ENSMUSG00000037300.20	ENSMUST00000117624.9	2970	20	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_15	118.173026812077	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	-8	True	ATTAAA	-16	NA	125448703	125398070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_13554.nnic	chr10	+	2592	7	NNC	ENSMUSG00000035873.9	novel	1745	7	NA	NA	-71	592	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	264.853838098593	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTGGTATTTAGGGTT	5527	False	NA	15	True	AATAAA	-17	NA	108167910	108250693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_108168294_108168548_108169173_108218590_108218723_108227558_108227594_108245323_108245472_108247824_108247930_108249528
transcript_135540.known	chr8	-	2905	19	FSM	ENSMUSG00000037300.20	ENSMUST00000231984.2	2905	19	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	106.569342173807	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	-8	True	ATTAAA	-16	NA	125448707	125398070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_135553.nic	chr8	-	1907	16	ISM	ENSMUSG00000037300.20	ENSMUST00000214828.2	3301	23	-44	8661	-39	-453	5prime_fragment	FALSE	canonical	3	143	junction_10	122.703146749471	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGGGTAAGCCTCCAGTT	NA	False	NA	-8	True	ATTAAA	-18	NA	125448761	125406732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_135562.nic	chr8	-	1895	14	ISM	ENSMUSG00000037300.20	ENSMUST00000118134.3	3148	21	-39	8512	-39	-306	5prime_fragment	FALSE	canonical	3	213	junction_10	81.4508963775725	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAACCACAGGCAGACCAA	NA	False	NA	NA	False	NA	NA	NA	125448761	125406585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_135563.nic	chr8	-	1748	14	ISM	ENSMUSG00000037300.20	ENSMUST00000118134.3	3148	21	-39	8659	-39	-453	5prime_fragment	FALSE	canonical	3	213	junction_10	81.4508963775725	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGGGTAAGCCTCCAGTT	NA	False	NA	-8	True	ATTAAA	-18	NA	125448761	125406732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_135572.nic	chr8	-	1520	12	ISM	ENSMUSG00000037300.20	ENSMUST00000041614.15	3038	18	-50	8659	-39	-453	5prime_fragment	FALSE	canonical	3	125	junction_8	104.246529165125	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGGGTAAGCCTCCAGTT	NA	False	NA	-8	True	ATTAAA	-18	NA	125448761	125406732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_135582.nnic	chr8	-	1720	5	NNC	ENSMUSG00000037300.20	novel	2409	4	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_1	180.045133230532	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTCTAAAGTCATTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	125448761	125434719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_-_125435912_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_135584.nnic	chr8	+	1180	6	NNC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	-5	-13	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	37.0113496106262	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAGTTCAGTAACTAAG	NA	False	NA	8	True	AATAAA	-17	NA	125448872	125460849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460522
transcript_135585.known	chr8	+	1165	6	FSM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	35.5111250173801	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGGTTGTCTTTTGAA	NA	False	NA	21	True	AATAAA	-30	NA	125448877	125460862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460545
transcript_135593.known	chr8	+	891	6	FSM	ENSMUSG00000031982.6	ENSMUST00000212036.2	891	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	39.5605864466138	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCCCTTATAGGAATGA	NA	False	NA	NA	False	NA	NA	NA	125448897	125460695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_125449082_125451994_125452115_125455107_125455222_125457577_125457756_125458535_125458681_125460545
transcript_135594.nic	chr8	+	3022	5	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	-5	13	-5	-13	intron_retention	FALSE	canonical	3	83	junction_2	14.0890028036054	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAGTTCAGTAACTAAG	NA	False	NA	8	True	AATAAA	-17	NA	125448872	125460849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535
transcript_135595.nic	chr8	+	2975	5	NIC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	-5	-13	intron_retention	FALSE	canonical	3	31	junction_3	30.6634962129239	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAGTTCAGTAACTAAG	NA	False	NA	8	True	AATAAA	-17	NA	125448872	125460849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457577_125457756_125458535
transcript_135598.nic	chr8	+	2935	5	ISM	ENSMUSG00000031982.6	ENSMUST00000212036.2	891	6	-25	-154	-5	-13	intron_retention	FALSE	canonical	3	24	junction_2	38.9767558937375	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAGTTCAGTAACTAAG	NA	False	NA	8	True	AATAAA	-17	NA	125448872	125460849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_+_125449082_125451994_125452115_125455107_125455222_125457577_125457756_125458535
transcript_1356.known	chr1	-	2359	10	FSM	ENSMUSG00000026047.14	ENSMUST00000065767.9	2359	10	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_6	34.7545183135931	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGGCCTCTGCCTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	44157968	44145705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
transcript_135601.known	chr8	-	1338	2	FSM	ENSMUSG00000043068.7	ENSMUST00000055257.7	1338	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCTGTGGTTAAACATGT	NA	False	NA	NA	False	ATTAAA	-20	NA	125478571	125466995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125468041_125478278
transcript_135613.known	chr8	+	2984	16	FSM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_6	36.0101220337961	1046	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAATGGTCTTATTAAC	5120	False	NA	34	True	AATAAA	-25	NA	125589771	125616796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
transcript_13563.known	chr10	+	5473	13	FSM	ENSMUSG00000020185.17	ENSMUST00000073781.12	5473	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	6.98808509774554	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTACTTGTAAAACATTTT	NA	False	NA	33	True	AATAAA	-26	NA	110581328	110623245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_110581541_110582192_110582286_110589941_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977_110603113_110610502_110610689_110611179_110611250_110614679_110615164_110616627_110616884_110618058_110618481_110620528
transcript_135653.known	chr8	-	2340	7	FSM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	0	0	0	0	multi-exon	FALSE	canonical	3	1367	junction_2	144.59416385948	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTCTGATGAGGCCTCC	NA	False	NA	NA	False	NA	NA	NA	125589859	125565226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
transcript_13566.known	chr10	+	3567	13	FSM	ENSMUSG00000020185.17	ENSMUST00000173471.8	3567	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.7480618407848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAGTTGCAGGAAGGAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	110581373	110621371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_110581541_110582179_110582286_110589941_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977_110603113_110610502_110610689_110611179_110611250_110614679_110615164_110616627_110616884_110618058_110618481_110620528
transcript_135661.known	chr8	-	3663	2	FSM	ENSMUSG00000031984.9	ENSMUST00000212808.2	3663	2	0	0	0	0	multi-exon	FALSE	canonical	3	1845	junction_1	0	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAACCCACA	NA	False	NA	NA	False	NA	NA	NA	125589704	125584428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125588011_125589623
transcript_135662.known	chr8	-	4598	1	FSM	ENSMUSG00000074030.4	ENSMUST00000098312.4	4598	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAGTAGAGAACTTTATT	NA	False	NA	-24	True	AATAAA	-21	NA	125624444	125619846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125619800_125624400
transcript_135663.known	chr8	+	4464	5	FSM	ENSMUSG00000031986.7	ENSMUST00000034467.7	4464	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	8.10478253872366	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGATGTGTCTTTCCG	NA	False	NA	9	True	AATAAA	-18	NA	125624624	125632900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_125625121_125625814_125625915_125626945_125627075_125628363_125628632_125629429
transcript_135666.nnic	chr8	+	4393	4	NIC	ENSMUSG00000031986.7	novel	4464	5	NA	NA	-58	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	34.7786652353933	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGATGTGTCTTTCCG	NA	False	NA	9	True	AATAAA	-18	NA	125624566	125632900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_+_125625121_125625814_125625915_125628363_125628632_125629429
transcript_135668.known	chr8	-	3594	5	FSM	ENSMUSG00000031987.7	ENSMUST00000034469.7	3594	5	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_4	22.6605383872493	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTGTTGTCACCTCCAG	NA	False	NA	-17	True	ATTAAA	-30	NA	125676063	125635325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_125637503_125638479_125638548_125640755_125640893_125642399_125642520_125674971
transcript_13567.known	chr10	+	2226	7	FSM	ENSMUSG00000020185.17	ENSMUST00000174810.8	2226	7	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_6	8.37489635093408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGGGTTTTCCAG	NA	False	NA	NA	False	AAAAAG	-2	NA	110581328	110604000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_110581541_110582192_110582286_110589941_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977
transcript_135672.known	chr8	+	2391	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	21.35790251874	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCCTCTGGTTAAGCTT	5194	False	NA	9	True	AATAAA	-14	NA	125739735	125760931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
transcript_135673.nnic	chr8	+	2259	6	NNC	ENSMUSG00000056820.8	novel	2169	5	NA	NA	-99	20	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	175.789647021661	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCCTTATTAATAATTTT	5095	False	NA	NA	False	NA	NA	NA	125739636	125757180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125756583_125756663
transcript_135674.known	chr8	+	2169	5	FSM	ENSMUSG00000056820.8	ENSMUST00000212603.2	2169	5	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	23.7631542519086	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	5246	False	NA	NA	False	NA	NA	NA	125739787	125757160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506
transcript_135679.known	chr8	-	6586	22	FSM	ENSMUSG00000001995.10	ENSMUST00000212168.2	6586	22	0	0	0	0	multi-exon	TRUE	canonical	3	164	junction_19	26.9293187551557	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGAAGCAGTGTTGCCT	NA	False	NA	-6	True	AATAAA	-18	NA	126296495	126144812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_126146031_126148619_126148702_126149317_126149442_126159916_126160049_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180298_126190890_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562_126201738_126206892_126207082_126208786_126208921_126217849_126219573_126246584_126246646_126296393
transcript_135689.known	chr8	-	6690	23	FSM	ENSMUSG00000001995.10	ENSMUST00000212987.2	6690	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	66.3698627216145	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAGAAGCAGTGTTGC	NA	False	NA	-8	True	AATAAA	-16	NA	126296547	126144814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_126146031_126148619_126148702_126149317_126149442_126149931_126149986_126159916_126160049_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180298_126190890_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562_126201738_126206892_126207082_126208786_126208921_126217849_126219573_126246584_126246646_126296393
transcript_13569.known	chr10	+	1384	6	FSM	ENSMUSG00000020186.8	ENSMUST00000020403.7	1384	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	20.350921355064	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGACAATCAATTCCTT	NA	False	NA	139	True	ATTAAA	-21	NA	110755649	110775483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
transcript_135690.known	chr8	+	3542	1	FSM	ENSMUSG00000050930.6	ENSMUST00000053078.5	3542	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTTTGGTGTTTATTTT	NA	False	NA	2	True	AATAAA	-15	NA	126396556	126400098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_126396600_126400100
transcript_135694.known	chr8	+	1155	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460941	126474974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
transcript_135697.known	chr8	+	1497	4	FSM	ENSMUSG00000031851.15	ENSMUST00000065135.12	1497	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	41.4273125150814	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGTCTAATTAGTTTA	NA	False	NA	NA	False	ACTAAA	-15	NA	126460976	126465918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126464793
transcript_13570.known	chr10	+	544	5	FSM	ENSMUSG00000020186.8	ENSMUST00000219502.2	544	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	83.7585816498823	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCAGATGGCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	110756065	110775189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110774497_110774592_110775071
transcript_135703.nic	chr8	-	4267	21	ISM	ENSMUSG00000060212.14	ENSMUST00000047239.13	7236	34	47113	1	-11354	0	3prime_fragment	TRUE	canonical	2	2	junction_9	2.04633819296811	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGTCTGTCTACTGTC	7757	False	NA	NA	False	ATTAAA	-13	NA	126577943	126478247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr8_-_126479052_126480110_126480560_126485850_126486042_126487446_126487722_126488262_126488494_126489543_126489689_126494955_126495078_126498715_126498950_126500540_126500795_126512010_126512227_126515232_126515292_126528199_126528330_126534738_126534848_126542399_126542578_126545407_126545550_126553657_126553809_126554781_126554875_126564675_126564773_126566322_126566433_126577021_126577114_126577758
transcript_135706.known	chr8	+	1309	4	FSM	ENSMUSG00000033998.10	ENSMUST00000212831.2	1309	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	57.0438427878066	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGTGGTTTATTACAA	NA	False	NA	19	True	AATAAA	-16	NA	126722174	126757422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_126722554_126751750_126752147_126756230_126756432_126757089
transcript_135707.known	chr8	+	2235	3	FSM	ENSMUSG00000033998.10	ENSMUST00000046765.10	2235	3	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_2	9	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGGTTTATTACAACT	NA	False	NA	21	True	AATAAA	-18	NA	126721908	126757424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_126722554_126751750_126752147_126756230
transcript_135709.known	chr8	+	2309	7	FSM	ENSMUSG00000057060.9	ENSMUST00000108759.3	2309	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.96741563579414	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACAAACACA	NA	False	NA	NA	False	NA	NA	NA	127025296	127122221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_127025601_127047737_127048063_127108853_127109074_127113567_127113694_127115821_127116015_127117782_127117873_127121170
transcript_13571.known	chr10	-	3635	17	FSM	ENSMUSG00000035798.15	ENSMUST00000220247.2	3635	17	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	9.44370656839781	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGGTCAACTGTACAAA	NA	False	NA	NA	False	NA	NA	NA	110845856	110778441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110785545_110786421_110786545_110790924_110791028_110792146_110792290_110796872_110796999_110803544_110803667_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
transcript_135711.known	chr8	-	6383	30	FSM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_27	8.4550992852775	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTATATAATGATTTTA	NA	False	NA	-19	True	AATAAA	-21	NA	127201804	127152067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_127153880_127154161_127154299_127154556_127154682_127154813_127155006_127155619_127155792_127157560_127157643_127160586_127160784_127161536_127161624_127163441_127163592_127165541_127165653_127167492_127167614_127170668_127170741_127170873_127171065_127173778_127173968_127174059_127174322_127174951_127175167_127177402_127177565_127178971_127179070_127179528_127179702_127180537_127180635_127182807_127182944_127183215_127183306_127184402_127184500_127185775_127185912_127188076_127188175_127189921_127189975_127193772_127193922_127196757_127196828_127198040_127198139_127200993
transcript_135718.known	chr8	+	747	2	FSM	ENSMUSG00000051671.8	ENSMUST00000059093.7	747	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGCGTGCTTCTGGCA	NA	False	NA	7	True	AATAAA	-18	NA	127149253	127152172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_127149570_127151741
transcript_13572.nic	chr10	-	4717	17	NIC	ENSMUSG00000035798.15	novel	4548	17	NA	NA	-95	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	8.47030659126339	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTGTCTGCTCAGTTC	NA	False	NA	-1	True	AATAAA	-14	NA	110846096	110777640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110785545_110786421_110786545_110790924_110791028_110792146_110792290_110796872_110796999_110803544_110803708_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
transcript_135723.known	chr8	-	4902	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	0	0	0	0	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGTCTTTCTATTTCA	NA	False	NA	-3	True	NA	NA	NA	127672590	127657416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
transcript_135729.known	chr8	-	3424	11	FSM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_8	10.5470374987482	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTTAGTGTAATTTCTT	NA	False	NA	0	True	ATTAAA	-29	NA	127697821	127673921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
transcript_135732.nnic	chr8	-	1160	10	NIC	ENSMUSG00000033931.10	novel	3424	11	NA	NA	0	-242	combination_of_known_splicesites	FALSE	canonical	3	16	junction_8	50.1686046137312	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTACAAATGAAGAAACCAAG	NA	False	NA	NA	False	AAAAAG	-25	NA	127697799	127676017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127697487_127697660_127697739
transcript_135733.known	chr8	-	1509	10	FSM	ENSMUSG00000033931.10	ENSMUST00000212618.2	1509	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	55.208694967369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAGTGTTCAAATGGTCA	NA	False	NA	-11	True	AATAAA	-21	NA	127697820	127675775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127692131_127692373_127696732_127696879_127697487_127697660_127697739
transcript_135738.known	chr8	+	4005	25	FSM	ENSMUSG00000025812.19	ENSMUST00000162665.8	4005	25	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_17	35.6621638512802	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAATAAAGGACATTTACC	NA	False	NA	NA	False	NA	NA	NA	127791044	128337286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136099_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
transcript_135739.known	chr8	+	5815	25	FSM	ENSMUSG00000025812.19	ENSMUST00000160272.8	5815	25	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_17	33.9451917311814	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGTCTCTAGTTTT	NA	False	NA	13	True	AATAAA	-21	NA	127790805	128338767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
transcript_135742.known	chr8	+	4050	24	FSM	ENSMUSG00000025812.19	ENSMUST00000026921.13	4050	24	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_17	35.6545068165681	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAATAAAGGACATTTACC	NA	False	NA	NA	False	NA	NA	NA	127791044	128337286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
transcript_135751.known	chr8	+	3394	21	FSM	ENSMUSG00000025812.19	ENSMUST00000079777.12	3394	21	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_20	36.1848034401183	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCATACCAGACTCAAAC	NA	False	NA	NA	False	NA	NA	NA	127790805	128159306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128159275
transcript_135754.known	chr8	+	3083	20	FSM	ENSMUSG00000025812.19	ENSMUST00000162602.8	3083	20	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_15	35.6917396186892	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTATTCAGATACAAAG	NA	False	NA	NA	False	NA	NA	NA	127791094	128153234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125241_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002
transcript_135760.known	chr8	+	3204	19	FSM	ENSMUSG00000025812.19	ENSMUST00000162456.8	3204	19	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_18	40.1787671952903	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGGCTGTTGACGAGTT	NA	False	NA	NA	False	AATAAA	-19	NA	128026092	128159625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_128026285_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128159275
transcript_135767.known	chr8	+	4682	16	FSM	ENSMUSG00000025812.19	ENSMUST00000162907.8	4682	16	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_15	26.9315180906437	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACTTTGTATGTATTGT	NA	False	NA	NA	False	AATAAA	-13	NA	127790819	128129058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128126878
transcript_135774.known	chr8	+	4214	14	FSM	ENSMUSG00000025812.19	ENSMUST00000160717.8	4214	14	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	34.055645380003	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCACTTTGTATGTATTGT	NA	False	NA	NA	False	AATAAA	-13	NA	128026065	128129058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_128026285_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128126878
transcript_135778.known	chr8	+	746	4	FSM	ENSMUSG00000025812.19	ENSMUST00000159940.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	28.2410261066335	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-35	NA	128306204	128337329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_128306285_128319541_128319663_128329539_128329668_128336912
transcript_13578.known	chr10	-	4548	17	FSM	ENSMUSG00000035798.15	ENSMUST00000041723.15	4548	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	8.47030659126339	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTGTCTGCTCAGTTC	NA	False	NA	-1	True	AATAAA	-14	NA	110845927	110777640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110785545_110786421_110786547_110790926_110791028_110792146_110792290_110796872_110796999_110803544_110803708_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
transcript_135782.known	chr8	+	3815	16	FSM	ENSMUSG00000025809.16	ENSMUST00000090006.12	3815	16	0	0	0	0	multi-exon	TRUE	canonical	3	487	junction_6	37.7685348169905	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTTTGGCTCTGTATT	NA	False	NA	16	True	AATAAA	-22	NA	129412134	129459681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_129412441_129431893_129431961_129433554_129433641_129436733_129436957_129439688_129439860_129440407_129440647_129442602_129442759_129443687_129443784_129444065_129444156_129446472_129446614_129446755_129446956_129448864_129449104_129449290_129449514_129450676_129450910_129452500_129452668_129458503
transcript_135785.known	chr8	+	2906	15	FSM	ENSMUSG00000025809.16	ENSMUST00000124826.2	2906	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	149.436287700253	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCCATTGGAAAAATTCT	NA	False	NA	19	True	AATAAA	-20	NA	129412237	129459098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_129412441_129431893_129431961_129433554_129433641_129439688_129439860_129440407_129440647_129442602_129442759_129443687_129443784_129444065_129444156_129446472_129446614_129446755_129446956_129448864_129449104_129449290_129449514_129450676_129450910_129452500_129452668_129458503
transcript_135788.known	chr8	+	651	4	FSM	ENSMUSG00000025809.16	ENSMUST00000135281.2	651	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	28.1582827759238	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGATCTGCTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	129412350	129437141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr8_+_129412441_129431893_129431961_129433554_129433641_129436733
transcript_13579.known	chr10	+	7204	24	FSM	ENSMUSG00000020189.16	ENSMUST00000105275.9	7204	24	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	11.7407406303097	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGATCCAGTGACTCTT	NA	False	NA	7	True	AATAAA	-18	NA	111000612	111133110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111001058_111040595_111040702_111060532_111060570_111069413_111069552_111091548_111091620_111099040_111099119_111101395_111101498_111103465_111103670_111105218_111105304_111106351_111106524_111107934_111108173_111108886_111109072_111110851_111110934_111112320_111112420_111113107_111113205_111116150_111116250_111117987_111118086_111120190_111120281_111121976_111122114_111123687_111123874_111124553_111124642_111125649_111125756_111127351_111127455_111128952
transcript_135793.known	chr9	+	3603	12	FSM	ENSMUSG00000025899.15	ENSMUST00000053407.13	3603	12	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_1	15.6162661540793	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAATTAAAAATA	-8	True	NA	NA	False	NA	NA	NA	3335477	3386929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_3335749_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
transcript_135796.known	chr9	+	7674	12	FSM	ENSMUSG00000025899.15	ENSMUST00000211933.2	7674	12	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	12.2683493875181	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCATAGTATTTTCT	-8	True	NA	NA	False	NA	NA	NA	3335477	3391154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_3335595_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
transcript_1358.known	chr1	-	2085	9	FSM	ENSMUSG00000026047.14	ENSMUST00000141125.8	2085	9	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_5	36.3145976158349	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTGTTTTGTTACAGTT	NA	False	NA	-5	True	AATAAA	-17	NA	44157913	44146044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
transcript_135800.nic	chr9	+	2561	11	NIC	ENSMUSG00000025899.15	novel	7674	12	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	19.3713706278105	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATTATACTT	-10	True	NA	NA	False	AATATA	-33	NA	3335475	3386175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_3335595_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
transcript_135806.known	chr9	+	4446	18	FSM	ENSMUSG00000025898.7	ENSMUST00000027027.7	4446	18	0	0	0	0	multi-exon	TRUE	canonical	3	200	junction_7	32.0504576240346	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGATTATCTTGTATTTTA	NA	False	NA	-51	True	NA	NA	NA	3403591	3479236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437_3431088_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816
transcript_135809.known	chr9	+	2283	8	FSM	ENSMUSG00000025898.7	ENSMUST00000212128.2	2283	8	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_7	39.8200031775642	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAATTA	9	True	NA	NA	False	AATGAA	-21	NA	3404087	3431942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437
transcript_135814.known	chr9	+	2085	3	FSM	ENSMUSG00000025898.7	ENSMUST00000212644.2	2085	3	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_2	20.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGTTT	9	True	NA	NA	False	NA	NA	NA	3404087	3413199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_3404191_3409965_3410077_3411328
transcript_135818.known	chr9	-	2843	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTAGGGCTTGACATGT	1	True	NA	NA	False	AATAAA	-45	NA	4309467	4294792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
transcript_135819.known	chr9	-	2810	6	FSM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_5	303.486671865504	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTTAGGGCTTGACATG	-1	True	NA	NA	False	AATAAA	-44	NA	4309469	4294793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309287
transcript_13582.known	chr10	+	3622	23	FSM	ENSMUSG00000020189.16	ENSMUST00000095310.3	3622	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	18.6097370763154	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAAATACGTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	111000662	111129615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111001058_111040595_111040702_111069413_111069552_111091548_111091620_111099040_111099119_111101395_111101498_111103465_111103670_111105218_111105304_111106351_111106524_111107934_111108173_111108886_111109072_111110851_111110934_111112320_111112420_111113107_111113205_111116150_111116250_111117987_111118086_111120190_111120281_111121976_111122114_111123687_111123874_111124553_111124642_111125649_111125756_111127351_111127455_111128952
transcript_135831.known	chr9	-	2519	5	FSM	ENSMUSG00000025894.12	ENSMUST00000212897.2	2519	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	415.72677325378	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAATTCAGTAAAAGTT	-3	True	NA	-33	True	ATTAAA	-13	NA	4309471	4294964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693_4308920_4309287
transcript_13584.known	chr10	+	2460	6	FSM	ENSMUSG00000020189.16	ENSMUST00000220139.2	2460	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	12.3450394896088	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	111000662	111100753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111001058_111040595_111040702_111060532_111060570_111069413_111069552_111091548_111091620_111099040
transcript_135843.nnic	chr9	-	901	5	NNC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	-36	-1648	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_3	348.214732600446	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	6	False	NA	NA	False	AATAAA	-36	NA	4309507	4296612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_4296840_4299297_4299370_4302469_4302632_4308733_4308920_4309253
transcript_13585.known	chr10	+	2744	2	FSM	ENSMUSG00000035759.5	ENSMUST00000040454.5	2744	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCATGTAAGTTAATTGT	NA	False	NA	NA	False	AATAAA	-20	NA	111134539	111137588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111134769_111135073
transcript_135851.nnic	chr9	-	722	4	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	-43	-1648	combination_of_known_splicesites	FALSE	canonical	3	71	junction_3	376.029549666276	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309514	4296612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309253
transcript_135854.known	chr9	+	2313	4	FSM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	18.4571575998762	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACGATGGAAAAAAGTCT	0	True	NA	NA	False	AATAAA	-27	NA	4309834	4331711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_4309935_4313701_4313807_4316826_4317072_4329848
transcript_135855.known	chr9	+	2231	3	FSM	ENSMUSG00000025893.9	ENSMUST00000049648.9	2231	3	0	0	0	0	multi-exon	TRUE	canonical	3	30	junction_1	14.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGAAGGGAAAATTTTCT	-2	True	NA	NA	False	ATTAAA	-18	NA	4309832	4331732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_4309935_4316826_4317072_4329848
transcript_135858.known	chr9	+	2800	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	13	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTGTCTGAAAGTTTA	-5	True	NA	14	True	AATAAA	-1	NA	4376561	4386870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_4376624_4383536_4384143_4384738
transcript_13586.known	chr10	+	3047	1	FSM	ENSMUSG00000035759.5	ENSMUST00000219990.2	3047	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGCATGTAAGTTAATT	NA	False	NA	NA	False	AATAAA	-18	NA	111134539	111137586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111134500_111137600
transcript_135860.nic	chr9	+	244	2	ISM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	-16	3168	-16	-3159	5prime_fragment	FALSE	canonical	3	88	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGCAATTTTAGTGTT	-21	True	NA	NA	False	AAGAAA	-3	NA	4376545	4383702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_4376624_4383536
transcript_135861.known	chr9	+	2731	2	FSM	ENSMUSG00000041124.12	ENSMUST00000047173.10	2731	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAAATTTTCCTGTCT	13	False	NA	5	True	ATTAAA	-13	NA	4383534	4386861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_4384143_4384738
transcript_135868.known	chr9	+	2421	8	FSM	ENSMUSG00000032002.11	ENSMUST00000215683.2	2421	8	0	0	0	0	multi-exon	FALSE	canonical	3	895	junction_7	57.310824564343	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATTTGCCTTCTTAATA	-21	True	NA	NA	False	AGTAAA	-20	NA	7184519	7208205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7205297_7205401_7206719
transcript_13587.known	chr10	+	1486	16	FSM	ENSMUSG00000058799.17	ENSMUST00000065917.16	1486	16	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_15	463.449884621364	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309083	111332745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
transcript_135871.known	chr9	+	1122	7	FSM	ENSMUSG00000032002.11	ENSMUST00000034499.10	1122	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	367.438165621857	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTCCGTTGAGTGTCA	10	True	NA	24	True	AATAAA	-32	NA	7184550	7207040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7206719
transcript_135874.known	chr9	+	480	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAAGGCTCCTGCCAGT	28	False	NA	NA	False	NA	NA	NA	7751725	7752205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_7751700_7752200
transcript_135875.known	chr9	+	2907	5	FSM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	14.5086181285469	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTAGTGTTTTGTTGAA	NA	False	NA	16	True	AATAAA	-19	NA	7764041	7794334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_7764314_7768290_7768342_7790842_7791110_7791311_7791466_7792171
transcript_135878.known	chr9	-	3331	8	FSM	ENSMUSG00000057367.13	ENSMUST00000190341.7	3331	8	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	22.0352222681815	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	-20	True	NA	-1	True	AATAAA	-21	NA	7837058	7818227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
transcript_135879.nnic	chr9	-	3081	7	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	57.8234861933761	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	-25	True	NA	-1	True	AATAAA	-21	NA	7837063	7818227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
transcript_135882.known	chr9	-	2667	9	FSM	ENSMUSG00000032000.18	ENSMUST00000013949.15	2667	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	6.89202437604511	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGCTGGGCAGGTTTAT	6	True	NA	NA	False	AATAAA	-34	NA	7873025	7848699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_7849458_7849672_7849715_7850920_7851173_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463_7861409_7872823
transcript_135885.known	chr9	-	4171	9	FSM	ENSMUSG00000053110.14	ENSMUST00000065353.13	4171	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_4	65.3241915372858	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCAACTTTTTTACATT	7	True	NA	-6	True	AATAAA	-22	NA	8004597	7931999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_7934734_7936515_7936629_7938408_7938540_7950492_7950541_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
transcript_135887.known	chr9	-	4115	8	FSM	ENSMUSG00000053110.14	ENSMUST00000086580.12	4115	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	48.6117479712088	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCAACTTTTTTACATT	15	True	NA	-6	True	AATAAA	-22	NA	8004589	7931999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_7934734_7936515_7936629_7938408_7938540_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
transcript_13589.known	chr10	+	1350	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTCATTTACTTACAGC	NA	False	NA	-11	True	NA	NA	NA	111309102	111331980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
transcript_135890.known	chr9	-	1592	7	FSM	ENSMUSG00000053070.6	ENSMUST00000065291.2	1592	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.38047614284762	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATCGTCAGTTAAAAA	9	True	NA	NA	False	GATAAA	-30	NA	8042824	8021672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_8022546_8023900_8023968_8025962_8026136_8027101_8027269_8037460_8037537_8042409_8042492_8042670
transcript_135893.known	chr9	+	3068	8	FSM	ENSMUSG00000031870.17	ENSMUST00000070463.10	3068	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.32992949004287	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAACTTTTCAGATGA	-6	True	NA	NA	False	AGTAAA	-17	NA	8900468	8965426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_8902085_8903596_8903749_8922599_8922717_8946645_8946952_8956244_8956390_8958330_8958462_8961396_8961555_8964983
transcript_135895.nic	chr9	-	3825	24	NIC	ENSMUSG00000050730.18	novel	6116	23	NA	NA	-46	-2439	combination_of_known_junctions	FALSE	canonical	3	46	junction_9	8.11449262420049	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACATGTGCATATTTTTTG	NA	False	NA	NA	False	AATAAA	-1	NA	9239152	8996768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257_9006642_9007968_9008114_9009277_9009438_9011336_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9074909_9075012_9115690_9115763_9155303_9155366_9180027_9180124_9238630
transcript_135896.nic	chr9	-	3469	24	NIC	ENSMUSG00000050730.18	novel	6116	23	NA	NA	-46	-2795	combination_of_known_junctions	FALSE	canonical	3	46	junction_9	8.11449262420049	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTGGTCCTAAACATT	NA	False	NA	NA	False	AATATA	-20	NA	9239152	8997124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257_9006642_9007968_9008114_9009277_9009438_9011336_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9074909_9075012_9115690_9115763_9155303_9155366_9180027_9180124_9238630
transcript_135899.known	chr9	-	6116	23	FSM	ENSMUSG00000050730.18	ENSMUST00000093893.12	6116	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	15.3348304455376	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCTCTTTTGTAGTTA	9	False	NA	NA	False	AATAAA	-19	NA	9239106	8994329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257_9006642_9007968_9008114_9009277_9009438_9011336_9011443_9015300_9015360_9016144_9016230_9016964_9017040_9018204_9018268_9029423_9029464_9030794_9030874_9033471_9033582_9035509_9035611_9046505_9046636_9048888_9048994_9059049_9059161_9115690_9115763_9155303_9155366_9180027_9180124_9238630
transcript_135905.nic	chr9	-	753	4	ISM	ENSMUSG00000050730.18	ENSMUST00000215397.2	663	6	-247	56585	-46	31667	5prime_fragment	FALSE	canonical	3	59	junction_1	2.94392028877595	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTGACTTTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	9239152	9115689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_9115763_9155303_9155366_9180027_9180124_9238630
transcript_135907.known	chr9	+	2723	4	FSM	ENSMUSG00000079084.13	ENSMUST00000215735.2	2723	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	15.2825245151302	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAGAAAAATTTCTCT	NA	False	NA	NA	False	AATAAA	-8	NA	13246636	13254721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_13246677_13248883_13248968_13251695_13252424_13252850
transcript_135908.known	chr9	+	2369	3	FSM	ENSMUSG00000079084.13	ENSMUST00000169961.3	2369	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTTTTACTGTTTCATC	NA	False	NA	NA	False	NA	NA	NA	13246609	13254424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_13246677_13251695_13252424_13252850
transcript_135913.nic	chr9	+	3220	17	NIC	ENSMUSG00000031918.17	novel	3106	16	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_4	125.44469336624	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGTCCACAGTTGTCT	NA	False	NA	26	True	ATTAAA	-15	NA	13660448	13717776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_13660697_13671713_13671785_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
transcript_135916.known	chr9	+	3088	16	FSM	ENSMUSG00000031918.17	ENSMUST00000155679.8	3088	16	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	100.813138473559	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCCACAGTTGTCTA	NA	False	NA	27	True	ATTAAA	-16	NA	13660476	13717777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_13660697_13671713_13671785_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
transcript_135917.known	chr9	+	3106	16	FSM	ENSMUSG00000031918.17	ENSMUST00000134674.8	3106	16	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	100.823057327622	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCCACAGTTGTCTA	NA	False	NA	27	True	ATTAAA	-16	NA	13660492	13717777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_13660697_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
transcript_135920.known	chr9	+	3788	15	FSM	ENSMUSG00000031918.17	ENSMUST00000034396.14	3788	15	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	44.4939803312121	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCCACAGTTGTCTA	NA	False	NA	27	True	ATTAAA	-16	NA	13659705	13717777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_13660697_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
transcript_135933.known	chr9	-	2523	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCTAACAAAGGCTTTAT	NA	False	NA	NA	False	AATAAA	-26	NA	13738403	13719089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_135937.known	chr9	-	2262	10	FSM	ENSMUSG00000031922.13	ENSMUST00000147115.8	2262	10	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	63.5314639653475	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGCAGTTTTTAAACT	NA	False	NA	NA	False	TATAAA	-17	NA	13738251	13719120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_135938.known	chr9	-	2173	10	FSM	ENSMUSG00000031922.13	ENSMUST00000142494.8	2173	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	82.7754660378169	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAACAAAGGCTTTATTT	NA	False	NA	NA	False	AATAAA	-28	NA	13738287	13719087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_13720137_13721155_13721301_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_135945.known	chr9	-	1255	7	FSM	ENSMUSG00000031922.13	ENSMUST00000144484.2	1255	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	93.9201788754685	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGTCAAAACCACCAGAAA	NA	False	NA	NA	False	AATAAA	-7	NA	13738349	13724727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13737837
transcript_135946.nic	chr9	-	1006	7	ISM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	-11	5638	-11	0	5prime_fragment	FALSE	canonical	3	207	junction_3	26.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGTCAAAACCACCAGAAA	NA	False	NA	NA	False	AATAAA	-7	NA	13738414	13724727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_135951.nic	chr9	-	872	6	ISM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	0	8295	0	-2642	5prime_fragment	FALSE	canonical	3	207	junction_2	25.7138095194003	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGGAAGCGGATGCAGG	NA	False	NA	NA	False	AAAAAG	-39	NA	13738403	13727384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_135952.nic	chr9	-	845	5	ISM	ENSMUSG00000031922.13	ENSMUST00000134746.8	1756	11	-102	8341	-20	-3443	5prime_fragment	FALSE	canonical	3	207	junction_1	28.743477520996	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTAAGTCAGTAACATGA	NA	False	NA	NA	False	AATACA	-30	NA	13738423	13728185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_135958.known	chr9	+	3760	11	FSM	ENSMUSG00000037808.14	ENSMUST00000156680.2	3760	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	54.6652540467892	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13739011	13757837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13747954_13748013_13748132_13748269_13750935_13751038_13755324
transcript_135962.known	chr9	+	3702	10	FSM	ENSMUSG00000037808.14	ENSMUST00000059579.12	3702	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	15.6165470962654	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13739011	13757837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748132_13748269_13750935_13751038_13755324
transcript_135966.nic	chr9	+	1088	8	ISM	ENSMUSG00000037808.14	ENSMUST00000059579.12	3702	10	-2	9570	-2	-3095	5prime_fragment	FALSE	canonical	3	110	junction_7	17.4192012282014	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGAGAGTACAGTTCACTG	NA	False	NA	NA	False	GATAAA	-3	NA	13739009	13748267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748132
transcript_135970.known	chr9	+	723	4	FSM	ENSMUSG00000037808.14	ENSMUST00000129861.2	723	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_2	4.49691252107735	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCATTGTGTATGGGTC	NA	False	NA	NA	False	NA	NA	NA	13739030	13742553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277
transcript_135971.known	chr9	+	9125	10	FSM	ENSMUSG00000032009.9	ENSMUST00000208222.2	9125	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	6.49976257875985	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTTCTTTCTTTAAT	NA	False	NA	9	True	AATAAA	-15	NA	14187596	14244397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_14187926_14217494_14217561_14219756_14219955_14221543_14221727_14225791_14226029_14227361_14227537_14231590_14231710_14232367_14232559_14233858_14234004_14236915
transcript_135976.known	chr9	-	4470	2	FSM	ENSMUSG00000037419.10	ENSMUST00000167549.2	4470	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGGAGTCACTGCTGAC	NA	False	NA	0	True	NA	NA	NA	14292538	14265285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14269184_14291966
transcript_135982.known	chr9	+	831	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCAATTTGACTTTTT	NA	False	NA	13	True	ATTAAA	-13	NA	14411942	14421661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
transcript_135984.known	chr9	+	1111	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATACAGCTTATAAAAAG	NA	False	NA	3	True	AATAAA	-27	NA	14411912	14421873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
transcript_135989.nic	chr9	+	649	5	ISM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	-72	5674	-72	1983	5prime_fragment	FALSE	canonical	3	777	junction_1	53.3121702803403	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCAAGAAGGAAAGAGCTG	NA	False	NA	22	True	NA	NA	NA	14411840	14416199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128
transcript_13599.known	chr10	+	1365	13	FSM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	384.309843167665	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTTTTTTATTTCA	NA	False	NA	4	True	AATAAA	-21	NA	111309141	111330870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
transcript_135992.known	chr9	+	526	2	FSM	ENSMUSG00000004096.10	ENSMUST00000216619.2	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTTGCTACAATTTAT	NA	False	NA	-12	True	AATAAA	-31	NA	14419102	14421858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_14419266_14421495
transcript_135993.known	chr9	-	8957	13	FSM	ENSMUSG00000013076.18	ENSMUST00000013220.8	8957	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_12	3.15788255358274	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTCCTCTTTTACCTTC	NA	False	NA	1	True	AATAAA	-17	NA	14526302	14453261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14459195_14459826_14460103_14461687_14461918_14462917_14463044_14466869_14467061_14469754_14469905_14473370_14473517_14482918_14483009_14483970_14484116_14486446_14486736_14504049_14505008_14507746_14507897_14526029
transcript_135996.known	chr9	-	688	4	FSM	ENSMUSG00000031927.10	ENSMUST00000060330.5	688	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGTTCTTCTGTTTCAA	NA	False	NA	NA	False	ATTAAA	-16	NA	14682326	14669486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14669752_14672900_14673027_14678152_14678258_14682134
transcript_136.known	SIRV5	+	1984	18	FSM	SIRV5A	SIRV502	1984	18	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_4	3430.92271124242	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTTACCGCCAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	1019	10989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
transcript_1360.known	chr1	-	1272	8	FSM	ENSMUSG00000026049.12	ENSMUST00000027215.12	1272	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	186.541782812039	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141551	44125772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44140626_44140683_44141059_44141118_44141487
transcript_136001.known	chr9	+	3286	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_1	46.9081733954962	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAATAATCTCATTCCCT	NA	False	NA	9	True	AATAAA	-27	NA	14695949	14745942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
transcript_136004.nic	chr9	+	2640	20	NIC	ENSMUSG00000031928.16	novel	3286	20	NA	NA	-8	-682	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	53.5567113407824	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCCGTTGTTCATTTCT	NA	False	NA	17	True	NA	NA	NA	14695963	14745260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_14696104_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
transcript_136018.known	chr9	-	1037	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	53	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGTATTTGGGTACATC	NA	False	NA	NA	False	NA	NA	NA	14695822	14692284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14692908_14693910_14694259_14695756
transcript_136019.known	chr9	-	2679	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	58.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTTGTTCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	14696152	14690913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14692908_14693910_14694259_14695815
transcript_136023.known	chr9	-	3207	2	FSM	ENSMUSG00000031931.5	ENSMUST00000214456.2	3207	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695846	14691082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14694259_14695815
transcript_136024.known	chr9	-	416	2	FSM	ENSMUSG00000031931.5	ENSMUST00000214979.2	416	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTGTGGACTTTTCT	NA	False	NA	NA	False	AGTAAA	-42	NA	14695818	14694125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14694259_14695535
transcript_136026.known	chr9	-	1633	1	FSM	ENSMUSG00000031931.5	ENSMUST00000214882.2	1633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAAAAAGGATGAT	NA	False	NA	NA	False	AGTAAA	-6	NA	14695794	14694161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14694200_14695800
transcript_136027.known	chr9	-	1753	2	FSM	ENSMUSG00000031931.5	ENSMUST00000034406.4	1753	2	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAATCAAAACAA	NA	False	NA	NA	False	NA	NA	NA	14694260	14691504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14692908_14693910
transcript_136028.known	chr9	+	428	2	FSM	ENSMUSG00000090023.2	ENSMUST00000159268.2	428	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGAATAAATGTTCCCC	NA	False	NA	NA	False	NA	NA	NA	14756908	14759131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_14757143_14758937
transcript_136030.known	chr9	-	5732	5	FSM	ENSMUSG00000031934.15	ENSMUST00000164273.9	5732	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	8.13557004763649	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTCTTTCTTGCTG	NA	False	NA	NA	False	AATAAA	-19	NA	14956774	14913423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_14917514_14918656_14919316_14921331_14921553_14932677_14932818_14956152
transcript_136031.known	chr9	+	1991	4	FSM	ENSMUSG00000031937.8	ENSMUST00000034413.8	1991	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	3.68178700572909	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCAAGTTTGTTTTTC	NA	False	NA	NA	False	ATTAAA	-1	NA	15150340	15170712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_15150655_15168525_15168853_15168946_15169088_15169503
transcript_136037.known	chr9	-	3964	12	FSM	ENSMUSG00000031935.10	ENSMUST00000034411.10	3964	12	0	0	0	0	multi-exon	TRUE	canonical	3	139	junction_7	15.3563726777577	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGCATAGTGGCATA	NA	False	NA	NA	False	NA	NA	NA	15191227	15171646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
transcript_136042.nic	chr9	-	2303	11	NIC	ENSMUSG00000031935.10	novel	3964	12	NA	NA	5	138	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	54.3050642205679	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCCAAGTATTTTGTGA	NA	False	NA	-4	True	CATAAA	-18	NA	15191222	15173164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_15173735_15174899_15175060_15176647_15176766_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
transcript_136044.nic	chr9	-	1374	8	ISM	ENSMUSG00000031935.10	ENSMUST00000034411.10	3964	12	5	10073	5	-81	5prime_fragment	FALSE	canonical	3	139	junction_3	15.8873585993804	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAATTAATTCAATACAGT	NA	False	NA	NA	False	GATAAA	-3	NA	15191222	15181719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
transcript_136056.known	chr9	+	1216	12	FSM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_9	145.029663537447	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9118	False	NA	-1	True	NA	NA	NA	15217555	15228266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
transcript_136064.known	chr9	-	2650	9	FSM	ENSMUSG00000031938.16	ENSMUST00000178977.9	2650	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	3.64005494464026	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTCTTTC	NA	False	NA	-7	True	AATAAA	-15	NA	15217463	15194634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15209138_15209238_15212662_15212810_15217332
transcript_136072.nic	chr9	+	1464	7	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	16	1	intron_retention	FALSE	canonical	3	69	junction_1	217.881275010038	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9088	False	NA	6	True	AATAAA	-17	NA	15217525	15223401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
transcript_136074.known	chr9	+	1148	7	FSM	ENSMUSG00000031939.17	ENSMUST00000034415.6	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	190.157317912184	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCTTAAGTGCTTAGCC	9072	False	NA	5	True	AATAAA	-16	NA	15217509	15223400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
transcript_136076.known	chr9	+	1005	6	FSM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	106.167791726116	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTGCTTGATTTCAGA	9122	False	NA	NA	False	AATAAA	-17	NA	15217559	15223094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
transcript_136081.known	chr9	+	629	4	FSM	ENSMUSG00000031939.17	ENSMUST00000215124.2	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	198.269737703183	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTTTTTTTTTAAATG	9116	False	NA	NA	False	AAGAAA	-35	NA	15217553	15220211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820
transcript_136084.nic	chr9	-	669	4	ISM	ENSMUSG00000046111.19	ENSMUST00000098979.12	7188	27	-71	34616	-71	-5129	5prime_fragment	FALSE	canonical	3	124	junction_1	14.522013940528	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTAATGAAACAGAAAACC	9636	False	NA	NA	False	CATAAA	-35	NA	15269155	15263008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_15263112_15264194_15264396_15265901_15266033_15268921
transcript_136085.nic	chr9	-	617	4	ISM	ENSMUSG00000046111.19	ENSMUST00000098979.12	7188	27	-71	34668	-71	-5181	5prime_fragment	FALSE	canonical	3	124	junction_1	14.522013940528	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGAAGTGAGGCATAAAGA	9636	False	NA	NA	False	AAAAAG	-5	NA	15269155	15263060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_15263112_15264194_15264396_15265901_15266033_15268921
transcript_136086.nic	chr9	+	410	3	ISM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	-87	3065	-37	0	5prime_fragment	FALSE	canonical	3	288	junction_1	109	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATATGAGCCAAAATTA	9035	False	NA	25	True	TTTAAA	-29	NA	15217472	15220029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_15217580_15219023_15219118_15219820
transcript_136087.known	chr9	+	612	3	FSM	ENSMUSG00000031939.17	ENSMUST00000216109.2	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	247	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATATGAGCCAAAATTA	9187	False	NA	25	True	TTTAAA	-29	NA	15217624	15220029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_15217934_15219023_15219118_15219820
transcript_136089.known	chr9	+	1210	11	FSM	ENSMUSG00000031939.17	ENSMUST00000216825.2	1210	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_10	180.996160180265	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	NA	False	NA	-1	True	NA	NA	NA	15219041	15228266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226773_15228184
transcript_136090.known	chr9	-	2562	8	FSM	ENSMUSG00000031938.16	ENSMUST00000034414.10	2562	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	3.8703477668983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTCTTTC	NA	False	NA	-7	True	AATAAA	-15	NA	15212852	15194634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15209138_15209238_15212662
transcript_136091.known	chr9	+	994	3	FSM	ENSMUSG00000058173.13	ENSMUST00000215907.2	994	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	1	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGGTGTTTCTCTTGT	NA	False	NA	8	True	AATAAA	-16	NA	15404727	15456553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_15404926_15436923_15437001_15455834
transcript_136095.known	chr9	+	5789	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCTTAAGAGTCTGTGG	8365	False	NA	NA	False	ATTAAA	-22	NA	18203420	18228738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
transcript_136099.nic	chr9	+	660	5	ISM	ENSMUSG00000001774.9	ENSMUST00000214441.2	941	6	-132	1319	44	-1319	5prime_fragment	FALSE	canonical	3	795	junction_1	91.2688336728371	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAAGACTTTTTTTTGGGT	8409	False	NA	NA	False	GATAAA	-37	NA	18203464	18215681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578
transcript_136100.known	chr9	+	519	4	FSM	ENSMUSG00000001774.9	ENSMUST00000213605.2	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	89.2785901919753	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCGTGTATTTTCCTTTG	8546	False	NA	NA	False	TATAAA	-16	NA	18203601	18213578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321
transcript_136101.known	chr9	+	810	9	FSM	ENSMUSG00000001774.9	ENSMUST00000217031.2	810	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	312.49457495291	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCAACAGTACTTTGGT	8595	False	NA	NA	False	NA	NA	NA	18203650	18223309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216591_18216648_18220045_18220117_18221128_18221235_18223207
transcript_136103.known	chr9	-	2799	19	FSM	ENSMUSG00000043943.15	ENSMUST00000166825.8	2799	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.64147630029935	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTTAGCATCAAGAAACA	2058	False	NA	NA	False	AATAAA	-17	NA	18297332	18234315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_18234920_18237471_18237565_18238659_18238742_18241930_18242196_18246223_18246315_18250686_18250779_18258749_18258818_18260145_18260210_18262145_18262229_18262331_18262452_18262705_18262792_18274437_18274537_18275416_18275511_18287718_18287906_18289903_18290030_18291207_18291310_18292090_18292278_18296340_18296453_18297088
transcript_136108.known	chr9	+	3988	9	FSM	ENSMUSG00000057551.11	ENSMUST00000208694.2	3988	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_2	38.1313519298752	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533423	19561027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
transcript_136114.nic	chr9	+	2591	8	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_2	34.0665614972351	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGCCAGCTCTTTATT	NA	False	NA	9	True	ATTAAA	-12	NA	19533372	19559634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
transcript_136115.nic	chr9	+	3976	8	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_2	34.0665614972351	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533380	19561027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
transcript_136119.known	chr9	-	608	3	FSM	ENSMUSG00000045519.16	ENSMUST00000143992.3	608	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTCTTGTCATATATT	NA	False	NA	NA	False	NA	NA	NA	20296473	20263876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20264138_20265359_20265546_20296312
transcript_13612.nic	chr10	+	707	7	ISM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	-146	3960	-88	-1913	5prime_fragment	TRUE	canonical	3	1615	junction_6	194.82955513873	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGATGAAGAAAAAGAAGACC	NA	False	NA	25	True	AAGAAA	-26	NA	111308995	111326910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869
transcript_136121.known	chr9	-	11276	10	FSM	ENSMUSG00000063108.16	ENSMUST00000159569.9	11276	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	14.1499901845274	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATGCCTTTTAAGTTG	NA	False	NA	NA	False	NA	NA	NA	20371456	20339744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20349957_20350817_20350901_20351487_20351572_20352624_20352752_20353475_20353562_20355554_20355664_20356189_20356282_20357041_20357194_20370842_20370958_20371240
transcript_136124.known	chr9	-	2135	9	FSM	ENSMUSG00000059475.14	ENSMUST00000163348.8	2135	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	10.295630140987	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGTGGATGCTGGCAAG	NA	False	NA	NA	False	NA	NA	NA	20404038	20381121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20382542_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681_20403748_20403993
transcript_136129.nic	chr9	-	3307	8	ISM	ENSMUSG00000059475.14	ENSMUST00000080386.13	2417	9	-25	-619	-21	-220	intron_retention	FALSE	canonical	3	13	junction_7	7.74333156163866	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGGTCTATGACTTTGC	NA	False	NA	-9	True	NA	NA	NA	20404063	20380223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681
transcript_136135.nic	chr9	-	2688	8	ISM	ENSMUSG00000059475.14	ENSMUST00000080386.13	2417	9	-25	0	-21	0	intron_retention	FALSE	canonical	3	13	junction_7	7.74333156163866	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAAATGTTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	20404063	20380842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681
transcript_136137.known	chr9	-	3557	7	FSM	ENSMUSG00000059475.14	ENSMUST00000115562.9	3557	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	10.4309901522126	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTCTAGTTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	20404042	20379844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20403681
transcript_13614.known	chr10	+	1949	2	FSM	ENSMUSG00000020205.9	ENSMUST00000164773.2	1949	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTAAAGGTCTCTTTTT	NA	False	NA	18	True	ATTAAA	-18	NA	111342146	111344506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111343510_111343920
transcript_136142.known	chr9	-	6283	9	FSM	ENSMUSG00000060510.15	ENSMUST00000174462.8	6283	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_8	12.7156399760295	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTAATGTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	20432713	20406363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432639
transcript_136143.known	chr9	-	2266	9	FSM	ENSMUSG00000060510.15	ENSMUST00000068296.8	2266	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	12.1140414395857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATCTGTTGCCACCTTTA	NA	False	NA	NA	False	NA	NA	NA	20432704	20410360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432650
transcript_136148.known	chr9	-	679	2	FSM	ENSMUSG00000060510.15	ENSMUST00000213275.2	679	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATACA	-6	NA	20432706	20431803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20432416_20432639
transcript_136150.known	chr9	+	2661	7	FSM	ENSMUSG00000058192.17	ENSMUST00000140668.8	2661	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	12.0369800568452	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCTGAGTTTCATGATAT	42	False	NA	25	True	ATTAAA	-25	NA	20492820	20506490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20500752_20500855_20502108_20502181_20502634_20502718_20504456
transcript_136152.known	chr9	+	12974	6	FSM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	3.8262252939418	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTGTTGATTAATGAT	NA	False	NA	NA	False	NA	NA	NA	20492620	20516705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20502108_20502181_20502634_20502718_20504456
transcript_136158.known	chr9	+	794	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161486.8	794	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	472.738828530088	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCTAGACAAATACTAGAG	NA	False	NA	NA	False	NA	NA	NA	20556129	20558436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556897_20556956_20557911
transcript_136159.known	chr9	+	2114	5	FSM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_4	63.2114507031756	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGTGTACCACAATGACC	9984	False	NA	NA	False	NA	NA	NA	20554613	20558260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
transcript_13616.known	chr10	+	5023	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCTCTTGTAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	111808568	111824337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
transcript_136160.known	chr9	+	489	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161882.8	489	5	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_4	473.611127403063	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGCTTTGCTGCTGTC	NA	False	NA	10	True	AATAAA	-7	NA	20556163	20558065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556990_20557825
transcript_136161.known	chr9	+	505	5	FSM	ENSMUSG00000084786.10	ENSMUST00000162303.8	505	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	467.366558495577	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556116	20558071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20556273_20556488_20556556_20556701_20556786_20556917_20556956_20557911
transcript_136164.known	chr9	+	2511	4	FSM	ENSMUSG00000084786.10	ENSMUST00000154429.9	2511	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	4.78423336480244	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	9544	False	NA	16	True	AATAAA	-13	NA	20554173	20558071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20556190_20556488_20556786_20556917_20556956_20557911
transcript_136167.known	chr9	-	3756	4	FSM	ENSMUSG00000066892.15	ENSMUST00000148631.8	3756	4	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_3	35.3270434653114	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTGCACTTATTTAAC	NA	False	NA	-1	True	ATTAAA	-21	NA	20556043	20549081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20550495_20553319_20553393_20553499_20555595_20555868
transcript_136168.known	chr9	-	761	4	FSM	ENSMUSG00000066892.15	ENSMUST00000131343.8	761	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	34.3446583263767	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCGGGTCACTGAGACCG	NA	False	NA	NA	False	NA	NA	NA	20556054	20550096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20550495_20553319_20553393_20555490_20555595_20555868
transcript_136171.known	chr9	-	2056	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	23	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556063	20549084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20550495_20553319_20553393_20555490
transcript_136173.known	chr9	+	501	4	FSM	ENSMUSG00000084786.10	ENSMUST00000160124.2	501	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	68.2658203072535	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556336	20558071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20556556_20556701_20556786_20556917_20556956_20557911
transcript_136174.known	chr9	-	1668	3	FSM	ENSMUSG00000066892.15	ENSMUST00000151861.9	1668	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	46.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGTTGCACTTATTTAA	NA	False	NA	-2	True	ATTAAA	-20	NA	20556051	20549082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20550495_20553319_20553393_20555868
transcript_136177.known	chr9	+	3843	4	FSM	ENSMUSG00000032171.8	ENSMUST00000034689.8	3843	4	0	0	0	0	multi-exon	FALSE	canonical	3	2626	junction_2	73.4892282356174	2327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTTTGTCAGAGGGATC	NA	False	NA	NA	False	NA	NA	NA	20563390	20577880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20563494_20566657_20566877_20573593_20573705_20574470
transcript_136179.known	chr9	-	1895	6	FSM	ENSMUSG00000032172.9	ENSMUST00000215999.2	1895	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	2.92574776766556	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTGGGTTGTTTTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	20657645	20578988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20580081_20582995_20583103_20583430_20583651_20583922_20584070_20586869_20587020_20657466
transcript_13618.known	chr10	+	3451	9	FSM	ENSMUSG00000063334.17	ENSMUST00000075924.8	3451	9	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_5	40.3978263647934	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGTTGGGCTCTTTCT	NA	False	NA	NA	False	AAGAAA	-16	NA	111808679	111822799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
transcript_136180.known	chr9	-	6119	67	FSM	ENSMUSG00000004098.8	ENSMUST00000004201.8	6119	67	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_62	3.84063264799209	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTTTTCTCTTTAAAAT	1603	False	NA	-2	True	AATAAA	-21	NA	20726363	20681345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20682275_20682366_20682607_20682882_20682952_20683403_20683517_20683600_20683800_20684380_20684435_20685189_20685226_20685309_20685364_20685611_20685720_20685856_20685911_20686326_20686381_20686528_20686637_20686761_20686816_20687129_20687184_20687387_20687442_20687608_20687663_20688287_20688396_20689772_20689827_20689960_20690015_20690096_20690151_20690311_20690366_20691196_20691305_20693103_20693158_20693782_20693837_20693920_20694029_20694779_20694888_20695964_20696019_20696441_20696532_20696668_20696777_20696868_20696923_20697494_20697549_20697646_20697701_20698385_20698431_20698556_20698611_20698826_20698872_20699846_20699901_20703940_20703995_20704805_20704914_20705006_20705061_20705242_20705288_20706952_20707007_20707105_20707151_20707245_20707300_20708517_20708563_20708678_20708733_20708869_20708915_20709713_20709768_20709884_20709930_20710331_20710386_20710555_20710610_20710704_20710759_20711538_20711593_20712363_20712418_20712511_20712569_20713062_20713147_20713239_20713315_20713753_20713817_20714302_20714345_20714415_20714464_20715932_20716074_20716165_20716280_20718900_20719051_20719655_20719761_20720735_20720893_20720960_20721151_20721235_20721398_20726161
transcript_136189.known	chr9	+	1683	8	FSM	ENSMUSG00000038884.15	ENSMUST00000043911.8	1683	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_6	22.3469853694417	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779937	20785603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
transcript_136194.nic	chr9	+	1837	7	NIC	ENSMUSG00000038884.15	novel	1683	8	NA	NA	-16	0	intron_retention	TRUE	canonical	3	88	junction_5	14.0118997046558	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779921	20785603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784561_20784837
transcript_136195.known	chr9	+	3210	7	FSM	ENSMUSG00000038884.15	ENSMUST00000175820.8	3210	7	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	23.9704679414761	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779953	20785603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20780233_20780625_20780750_20780899_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
transcript_136197.nic	chr9	+	3259	6	NIC	ENSMUSG00000038884.15	novel	3210	7	NA	NA	-16	-121	intron_retention	FALSE	canonical	3	88	junction_4	15.3414471286121	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTCTTTGTGCAAAGCT	NA	False	NA	NA	False	AATAAA	-12	NA	20779921	20785482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_20780233_20780625_20780750_20780899_20782532_20782671_20782822_20784163_20784561_20784837
transcript_136198.nic	chr9	+	3380	6	NIC	ENSMUSG00000038884.15	novel	3210	7	NA	NA	-16	0	intron_retention	FALSE	canonical	3	88	junction_4	15.3414471286121	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779921	20785603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_20780233_20780625_20780750_20780899_20782532_20782671_20782822_20784163_20784561_20784837
transcript_1362.known	chr1	-	935	7	FSM	ENSMUSG00000026049.12	ENSMUST00000133677.8	935	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	163.292596960861	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGGTTGGTTAATTTGAT	NA	False	NA	NA	False	AATAAA	-2	NA	44141583	44126019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141059_44141118_44141487
transcript_13620.known	chr10	-	3566	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGACTCATCTTCTTA	NA	False	NA	NA	False	AATAAA	-44	NA	112764900	112761334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_112761300_112764900
transcript_136203.known	chr9	-	1582	6	FSM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	47.4409106152064	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	-5	True	NA	NA	NA	20791023	20785103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344_20789900_20790898
transcript_136206.nic	chr9	-	2406	4	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	1654	0	1654	0	intron_retention	FALSE	canonical	3	97	junction_3	15.9652400197707	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	-5	True	NA	NA	NA	20789369	20785103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687
transcript_136210.known	chr9	+	1670	11	FSM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_9	65.2172523186925	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799470	20803474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
transcript_13622.known	chr10	-	3752	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCATTTCTTTGGAGCGC	NA	False	NA	NA	False	ACTAAA	-3	NA	115087372	115033776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
transcript_136227.known	chr9	-	1101	11	FSM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	0	0	0	0	multi-exon	FALSE	canonical	3	2112	junction_10	212.212370044727	1913	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTGCTTATTTTCT	5139	False	NA	-1	True	AGTAAA	-16	NA	20809919	20805644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
transcript_136255.known	chr9	-	5870	39	FSM	ENSMUSG00000004099.17	ENSMUST00000178110.3	5870	39	0	0	0	0	multi-exon	TRUE	canonical	2	13	junction_38	182.859619877428	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAGTGATTGAGTTC	NA	False	NA	-7	True	AATAAA	-17	NA	20863919	20818504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851848_20852668_20852880_20852994_20853103_20853878_20853916_20863141
transcript_136256.known	chr9	-	5367	39	FSM	ENSMUSG00000004099.17	ENSMUST00000004202.17	5367	39	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_35	116.269340570878	1076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAGTGATTGAGTTC	NA	False	NA	-7	True	AATAAA	-17	NA	20864275	20818504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20864003
transcript_136257.known	chr9	-	5543	39	FSM	ENSMUSG00000004099.17	ENSMUST00000216540.2	5543	39	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_38	187.220863319369	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTCACCCAGAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	20863901	20818816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20863141
transcript_136320.known	chr9	-	379	3	FSM	ENSMUSG00000043895.7	ENSMUST00000214218.2	379	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTACAATTACACCAAGGA	8166	False	NA	NA	False	NA	NA	NA	20888005	20879778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20879867_20886768_20886948_20887893
transcript_136321.known	chr9	-	6394	2	FSM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	0	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTGTTTTGTTTTGT	8094	False	NA	NA	False	NA	NA	NA	20888077	20873656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20879867_20887893
transcript_136322.known	chr9	-	1587	1	FSM	ENSMUSG00000043895.7	ENSMUST00000214333.2	1587	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAACAAAAAGAGA	8171	False	NA	NA	False	NA	NA	NA	20888000	20886413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20886400_20888000
transcript_136326.known	chr9	+	815	9	FSM	ENSMUSG00000003299.11	ENSMUST00000214124.2	815	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	336.318301613219	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTCACCCTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	20914213	20919824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918153_20918623_20918837_20918926_20919037_20919118_20919196_20919789
transcript_136332.known	chr9	+	1288	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	1053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGGTCACTGCTGTGG	NA	False	NA	26	True	AATAAA	-26	NA	20914033	20920135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
transcript_13634.nic	chr10	-	732	6	ISM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	-19	23711	-19	7617	5prime_fragment	FALSE	canonical	3	391	junction_5	45.9669446450381	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTGGTTATAGTCCTTA	NA	False	NA	NA	False	AATACA	-2	NA	115087391	115057487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
transcript_13635.nnic	chr10	-	1878	8	NNC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	63.4967458590901	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	-1	True	TATAAA	-22	NA	115198169	115176643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_115177245_115178378_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
transcript_136359.known	chr9	+	2317	5	FSM	ENSMUSG00000003299.11	ENSMUST00000213977.2	2317	5	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_4	55.0244263941025	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914251	20920127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122
transcript_136366.known	chr9	+	2535	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGAGTTTGTGTACAG	NA	False	NA	16	True	AATAAA	-21	NA	20927280	20940113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
transcript_13637.known	chr10	-	2799	7	FSM	ENSMUSG00000069520.7	ENSMUST00000217884.2	2799	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	78.0590944235342	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198406	115176646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197753_115198291
transcript_136377.known	chr9	+	2203	2	FSM	ENSMUSG00000037405.9	ENSMUST00000215003.2	2203	2	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCAGCCTGCTGGCCCTGT	NA	False	NA	NA	False	NA	NA	NA	20927280	20932300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20927398_20930214
transcript_136378.known	chr9	+	971	3	FSM	ENSMUSG00000001014.7	ENSMUST00000001040.7	971	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTTACGGTTCTTG	NA	False	NA	NA	False	AATAAA	-15	NA	20940668	20941891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_20941120_20941232_20941539_20941677
transcript_13638.known	chr10	-	3012	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198172	115176646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
transcript_136384.nnic	chr9	-	4781	25	NNC	ENSMUSG00000032175.12	novel	4770	25	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_24	21.7934989669448	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTGTTGCTTGCAT	NA	False	NA	-4	True	NA	NA	NA	21042474	21015365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042391
transcript_136385.known	chr9	-	4770	25	FSM	ENSMUSG00000032175.12	ENSMUST00000214454.2	4770	25	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_24	14.2647949512077	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTGTTGCTTGCAT	NA	False	NA	-4	True	NA	NA	NA	21042539	21015365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
transcript_13639.nic	chr10	-	2940	7	NIC	ENSMUSG00000069520.7	novel	2799	7	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	71.1213751273132	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198435	115176646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115198291
transcript_1364.nic	chr1	-	1317	7	NIC	ENSMUSG00000026049.12	novel	1272	8	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_6	127.50348579113	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141652	44125772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059_44141118_44141487
transcript_13640.nic	chr10	-	3128	7	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	66.9842435867487	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198386	115176646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197811_115197865_115197956
transcript_136406.known	chr9	-	3470	13	FSM	ENSMUSG00000010205.12	ENSMUST00000115487.3	3470	13	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	41.8140725912541	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGCTGGCTGGTTCTTG	NA	False	NA	-2	True	ATTAAA	-31	NA	21003304	20985453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991468_20992000_20992114_20992270_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
transcript_136417.known	chr9	-	1010	5	FSM	ENSMUSG00000079681.4	ENSMUST00000115494.3	1010	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTTTTAATTATGTTTT	921	False	NA	NA	False	AATAAA	-21	NA	20978389	20973688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20974014_20974189_20974284_20974609_20974693_20977319_20977674_20978235
transcript_136418.known	chr9	-	812	5	FSM	ENSMUSG00000079677.3	ENSMUST00000010348.7	812	5	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	56.6171352154098	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984840	20978815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20984684
transcript_136419.nnic	chr9	-	735	4	NIC	ENSMUSG00000079677.3	novel	812	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_3	142.14312036348	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984818	20978815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_20979222_20979325_20979414_20984370_20984478_20984684
transcript_136420.known	chr9	-	681	4	FSM	ENSMUSG00000079677.3	ENSMUST00000215631.2	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_3	51.1881062574327	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAGGAAAGAGAAGTTGGA	NA	False	NA	NA	False	AAGAAA	-32	NA	20984802	20978990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984615_20984684
transcript_136423.known	chr9	-	1662	5	FSM	ENSMUSG00000032175.12	ENSMUST00000214864.2	1662	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	20.5106679559687	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGGCCTTACTCTGTT	NA	False	NA	NA	False	NA	NA	NA	21042539	21034754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
transcript_136424.known	chr9	-	4828	25	FSM	ENSMUSG00000032175.12	ENSMUST00000216874.2	4828	25	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_20	22.1345318450606	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTGTTGCTTGCAT	NA	False	NA	-4	True	NA	NA	NA	21042528	21015365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035506_21035706_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
transcript_136427.known	chr9	-	7851	8	FSM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	0	0	0	0	multi-exon	FALSE	canonical	3	1564	junction_6	89.7352113903194	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGTCATGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21061278	21044517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
transcript_136428.nic	chr9	-	1802	8	NIC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	-13	1522	combination_of_known_junctions	FALSE	canonical	3	62	junction_6	586.784875227641	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	21061291	21050726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053974_21054242_21054522_21061051
transcript_136432.nic	chr9	-	464	2	ISM	ENSMUSG00000019471.11	ENSMUST00000215296.2	1144	6	-53	2049	-13	-1187	5prime_fragment	FALSE	canonical	3	1791	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAAGAACATGCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	21061291	21054297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_21054522_21061051
transcript_136439.known	chr9	+	4653	15	FSM	ENSMUSG00000032177.18	ENSMUST00000039413.15	4653	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.67848837164382	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTGTTTCCTGGGATT	NA	False	NA	6	True	NA	NA	NA	21077009	21124544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21077529_21102622_21102815_21103690_21103728_21103815_21103887_21105870_21105921_21106041_21106155_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
transcript_13644.nic	chr10	-	1283	7	NIC	ENSMUSG00000069520.7	novel	2799	7	NA	NA	-29	1344	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	71.1213751273132	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTCCCGTGTTCCATTG	NA	False	NA	NA	False	AATAAA	-23	NA	115198435	115178303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115198291
transcript_136442.nic	chr9	+	2758	15	NIC	ENSMUSG00000032177.18	novel	3594	14	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_11	5.62429133857986	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTGAAACACATCAGCT	1124	False	NA	NA	False	NA	NA	NA	21092871	21122923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_21093117_21102622_21102815_21103690_21103728_21103815_21103887_21105870_21105921_21106041_21106155_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
transcript_136445.known	chr9	+	2962	15	FSM	ENSMUSG00000032177.18	ENSMUST00000115458.9	2962	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.67848837164382	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTGAAACACATCAGCT	3651	False	NA	NA	False	NA	NA	NA	21095398	21122923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21095848_21102622_21102815_21103690_21103728_21103815_21103887_21105870_21105921_21106041_21106155_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
transcript_136452.known	chr9	+	2524	10	FSM	ENSMUSG00000032177.18	ENSMUST00000003395.10	2524	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.29090887127416	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTGAAACACATCAGCT	NA	False	NA	NA	False	NA	NA	NA	21108000	21122923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21108475_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
transcript_136453.known	chr9	-	3172	6	FSM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	30.9993548319961	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGCTCTGAATTAACC	NA	False	NA	0	True	AATAAA	-17	NA	21150367	21141026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
transcript_136454.known	chr9	-	2163	6	FSM	ENSMUSG00000003308.16	ENSMUST00000193982.2	2163	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	50.5663920010119	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAGAAAAAAGAAGAAAAC	NA	False	NA	NA	False	AAAACA	-27	NA	21150375	21141928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150203
transcript_136455.known	chr9	-	2498	6	FSM	ENSMUSG00000003308.16	ENSMUST00000216436.2	2498	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	59.84981202978	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGGGGGGGACAGGCAA	NA	False	NA	NA	False	NA	NA	NA	21150657	21141695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145358_21148366_21149053_21150371
transcript_136476.known	chr9	-	3614	5	FSM	ENSMUSG00000003308.16	ENSMUST00000164812.8	3614	5	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	9.14808723176599	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCGTCTATTGTCTCTG	NA	False	NA	-9	True	AATACA	-28	NA	21150109	21141362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366
transcript_136477.known	chr9	+	574	2	FSM	ENSMUSG00000097439.7	ENSMUST00000193875.6	574	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTACACATAATAAATAAATA	5156	False	NA	NA	False	NA	NA	NA	21136666	21137709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21136773_21137241
transcript_136479.known	chr9	-	2598	19	FSM	ENSMUSG00000035047.10	ENSMUST00000038671.10	2598	19	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_10	26.4070697604511	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCCCATCCCTTCCCA	NA	False	NA	-9	True	AATAAA	-19	NA	21199265	21184752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
transcript_13650.known	chr10	-	3084	6	FSM	ENSMUSG00000069520.7	ENSMUST00000217887.2	3084	6	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_4	16.3291151015602	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198152	115176646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
transcript_136504.known	chr9	+	5951	10	FSM	ENSMUSG00000002820.7	ENSMUST00000065005.5	5951	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_8	36.048663953599	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGTCCTTGATGACATTT	8634	False	NA	NA	False	AATAAA	-25	NA	21176588	21189068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549
transcript_136506.nnic	chr9	+	1897	10	NNC	ENSMUSG00000002820.7	novel	5951	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_8	152.03800694417	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCCTGGCGTTGTTGA	8634	False	NA	21	True	GATAAA	-13	NA	21176588	21185041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184113_21184207_21184549
transcript_13651.known	chr10	-	4970	3	FSM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAATTTTTGTCATCCCT	2368	False	NA	NA	False	ATTAAA	-13	NA	115220340	115204308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_115208852_115212256_115212453_115220109
transcript_136537.known	chr9	-	345	2	FSM	ENSMUSG00000035047.10	ENSMUST00000183665.2	345	2	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCAACCACTGAGCTCTC	NA	False	NA	NA	False	AATACA	-28	NA	21199252	21198820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21199069_21199155
transcript_136538.known	chr9	+	1204	1	FSM	ENSMUSG00000002820.7	ENSMUST00000215767.2	1204	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACCCAACAGTCAGAATA	8647	False	NA	NA	False	NA	NA	NA	21176601	21177805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21176600_21177800
transcript_136539.known	chr9	-	691	3	FSM	ENSMUSG00000096472.3	ENSMUST00000213407.2	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	102.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCAATGTGACCCAAGGC	NA	False	NA	NA	False	GGGGCT	-37	NA	21202703	21200280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21200629_21202104_21202262_21202517
transcript_13654.known	chr10	-	3681	2	FSM	ENSMUSG00000020137.6	ENSMUST00000020346.6	3681	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACAAAAACACAGCTG	2393	False	NA	NA	False	NA	NA	NA	115220315	115205376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_115208852_115220109
transcript_136540.known	chr9	-	1423	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGACTTCAGATTTAGG	NA	False	NA	NA	False	ATTAAA	-12	NA	21202604	21199705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21200629_21202104
transcript_136542.known	chr9	-	1706	11	FSM	ENSMUSG00000003309.15	ENSMUST00000003397.9	1706	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	5.23545604508337	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGAGTGTGCTTCTTG	1345	False	NA	-4	True	ATTAAA	-12	NA	21223607	21206756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918_21214062_21216577_21216705_21216788_21217068_21220662_21220731_21220931_21221089_21223502
transcript_136543.nic	chr9	+	3592	23	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_22	61.283381862965	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	6594	False	NA	19	True	AATAAA	-19	NA	21232007	21266324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264425_21264977
transcript_136544.nic	chr9	+	3633	23	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_22	56.9185477184737	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACCTGGTATGCTTA	6594	False	NA	16	True	AATAAA	-16	NA	21232007	21266321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264469_21264977
transcript_136546.nic	chr9	+	3646	23	NIC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_22	51.5317642553865	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACCTGGTATGCTTA	5718	False	NA	16	True	AATAAA	-16	NA	21249105	21266321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264469_21264977
transcript_136548.nic	chr9	+	4143	22	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	14	1	intron_retention	FALSE	canonical	3	72	junction_21	46.6520385236562	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGACCTGGTATGCTTAA	6594	False	NA	17	True	AATAAA	-17	NA	21232007	21266322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296
transcript_136549.known	chr9	+	3428	22	FSM	ENSMUSG00000057193.9	ENSMUST00000215574.2	3428	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	59.9503573923786	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACCTGGTATGCTTAAT	6621	False	NA	18	True	AATAAA	-18	NA	21232034	21266323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259186_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
transcript_136552.nic	chr9	+	4156	22	NIC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	-18	1	intron_retention	FALSE	canonical	3	72	junction_21	38.6895897334347	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGACCTGGTATGCTTAA	5718	False	NA	17	True	AATAAA	-17	NA	21249105	21266322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296
transcript_136553.known	chr9	+	3456	22	FSM	ENSMUSG00000057193.9	ENSMUST00000034697.8	3456	22	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_21	32.3776608971381	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACCTGGTATGCTTA	5736	False	NA	16	True	AATAAA	-16	NA	21249123	21266321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
transcript_13656.nic	chr10	+	4165	20	ISM	ENSMUSG00000034163.11	ENSMUST00000036044.9	6957	35	-56	17118	-56	-15220	5prime_fragment	FALSE	canonical	3	82	junction_8	29.9156709505412	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAGCCAAAGTTTTGTAG	NA	False	NA	NA	False	GATAAA	-7	NA	115220807	115251559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_115221713_115226554_115226972_115233909_115233975_115236619_115236819_115237513_115237738_115239104_115239226_115240104_115240203_115242257_115242468_115242638_115242804_115243779_115243918_115244775_115244898_115244997_115245148_115246433_115246609_115247103_115247236_115247624_115248168_115248261_115248372_115249866_115249999_115250100_115250223_115251143_115251246_115251524
transcript_136570.known	chr9	+	1315	9	FSM	ENSMUSG00000057193.9	ENSMUST00000213758.2	1315	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	52.957382629809	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAAAT	6630	False	NA	NA	False	NA	NA	NA	21232043	21254871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254344_21254430
transcript_136574.nnic	chr9	+	3468	21	NNC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	533.927642569665	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCCGCTGAATGTAGAT	NA	False	NA	76	True	NA	NA	NA	21279136	21316617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314687_21315355_21315488_21315991
transcript_136576.known	chr9	+	3513	21	FSM	ENSMUSG00000032178.15	ENSMUST00000213518.2	3513	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	555.681284550776	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTGTCTCAGGCCTGG	NA	False	NA	116	True	AATAAA	-14	NA	21279233	21316657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315479_21315991
transcript_136582.nnic	chr9	+	3402	20	NNC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	542.146109856128	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCCGCTGAATGTAGAT	NA	False	NA	76	True	NA	NA	NA	21279163	21316617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314687_21315355_21315488_21315991
transcript_136584.known	chr9	+	3549	20	FSM	ENSMUSG00000032178.15	ENSMUST00000067646.12	3549	20	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_18	395.630525194118	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	115	True	AATAAA	-13	NA	21279166	21316656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
transcript_136587.known	chr9	+	3684	19	FSM	ENSMUSG00000032178.15	ENSMUST00000216892.2	3684	19	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_18	377.751077487821	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCCTCCGTACTTGAGT	NA	False	NA	23	True	AATACA	-12	NA	21279250	21313090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
transcript_136596.known	chr9	+	3606	18	FSM	ENSMUSG00000032178.15	ENSMUST00000115414.3	3606	18	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_17	371.198684895057	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTACTTGAGTCTTCATTCA	NA	False	NA	32	True	AATACA	-21	NA	21279298	21313099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
transcript_13660.nic	chr10	+	2878	13	ISM	ENSMUSG00000034163.11	ENSMUST00000036044.9	6957	35	-56	22180	-56	-20282	5prime_fragment	FALSE	canonical	3	82	junction_8	33.9983659738066	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTGTTCGAAATGCTGA	NA	False	NA	NA	False	AAGAAA	-1	NA	115220807	115246497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_115221713_115226554_115226972_115233909_115233975_115236619_115236819_115237513_115237738_115239104_115239226_115240104_115240203_115242257_115242468_115242638_115242804_115243779_115243918_115244775_115244898_115244997_115245148_115246433
transcript_136602.nic	chr9	+	2227	16	ISM	ENSMUSG00000032178.15	ENSMUST00000216892.2	3684	19	-141	2246	-57	-1057	5prime_fragment	FALSE	canonical	3	1159	junction_3	322.553120517467	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCCCAGTACCTGTCCGA	NA	False	NA	NA	False	AAAAAG	-5	NA	21279109	21310844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711
transcript_136605.nic	chr9	+	2161	15	ISM	ENSMUSG00000032178.15	ENSMUST00000115414.3	3606	18	-162	2255	-30	-1057	5prime_fragment	FALSE	canonical	3	966	junction_2	301.197990683598	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCCCAGTACCTGTCCGA	NA	False	NA	NA	False	AAAAAG	-5	NA	21279136	21310844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711
transcript_136608.nic	chr9	+	1589	12	ISM	ENSMUSG00000032178.15	ENSMUST00000214217.2	4679	18	-138	5482	-63	225	5prime_fragment	FALSE	canonical	3	1159	junction_3	372.690064661671	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGATCCAGAAGAAAGGTA	NA	False	NA	20	True	AAGAAA	-3	NA	21279103	21307606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512
transcript_136616.nic	chr9	+	1513	11	ISM	ENSMUSG00000032178.15	ENSMUST00000115414.3	3606	18	-158	5493	-26	225	5prime_fragment	FALSE	canonical	3	966	junction_2	354.658159359121	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGATCCAGAAGAAAGGTA	NA	False	NA	20	True	AAGAAA	-3	NA	21279140	21307606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512
transcript_136626.known	chr9	+	698	5	FSM	ENSMUSG00000032178.15	ENSMUST00000214852.2	698	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	881.708391419748	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCCTTGACCATCCATC	NA	False	NA	NA	False	GATAAA	-19	NA	21279298	21303670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21279396_21298995_21299094_21299804_21300050_21300601_21300780_21303590
transcript_136631.known	chr9	+	1316	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	612	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGCTCTTGTGTCTGTC	2369	False	NA	42	True	TATAAA	-28	NA	21323132	21331570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
transcript_13665.nic	chr10	+	1323	2	ISM	ENSMUSG00000034163.11	ENSMUST00000036044.9	6957	35	-56	41705	-56	-39807	5prime_fragment	FALSE	canonical	3	118	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGGGGTGACGCTGGGCG	NA	False	NA	NA	False	NA	NA	NA	115220807	115226972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_115221713_115226554
transcript_13666.known	chr10	+	6957	35	FSM	ENSMUSG00000034163.11	ENSMUST00000036044.9	6957	35	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_22	26.4839345439331	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAATAGTGGGACTGTTTT	NA	False	NA	9	True	AATAAA	-21	NA	115220863	115268677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_115221713_115226554_115226972_115233909_115233975_115236619_115236819_115237513_115237738_115239104_115239226_115240104_115240203_115242257_115242468_115242638_115242804_115243779_115243918_115244775_115244898_115244997_115245148_115246433_115246609_115247103_115247236_115247624_115248168_115248261_115248372_115249866_115249999_115250100_115250223_115251143_115251246_115251524_115251645_115252643_115252828_115254546_115254734_115255676_115255866_115256546_115256785_115259109_115259216_115259288_115259488_115260462_115260558_115262940_115263052_115263302_115263408_115263529_115263696_115264765_115264867_115266557_115266660_115267307_115267348_115267607_115267671_115267800
transcript_136665.known	chr9	+	2613	21	FSM	ENSMUSG00000033335.18	ENSMUST00000172482.8	2613	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	207.867572026038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCAGGGGGCAATGTTCT	6030	False	NA	NA	False	NA	NA	NA	21336391	21417698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21390194_21390334_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
transcript_136666.known	chr9	+	3063	21	FSM	ENSMUSG00000033335.18	ENSMUST00000165766.9	3063	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	219.759049870534	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACTCTGCAGATGTGTC	5842	False	NA	15	True	AATAAA	-16	NA	21336203	21419050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21390194_21390334_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
transcript_136667.known	chr9	+	3502	21	FSM	ENSMUSG00000033335.18	ENSMUST00000072362.14	3502	21	0	0	0	0	multi-exon	FALSE	canonical	2	327	junction_20	112.703715555433	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGTGTGGGCCTTTTGT	5879	False	NA	20	True	AATAAA	-30	NA	21336240	21418436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
transcript_136668.nic	chr9	+	3123	21	NIC	ENSMUSG00000033335.18	novel	3063	21	NA	NA	-60	0	combination_of_known_junctions	TRUE	canonical	2	156	junction_20	136.611712528612	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACTCTGCAGATGTGTC	5782	False	NA	15	True	AATAAA	-16	NA	21336143	21419050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718
transcript_136681.known	chr9	+	3450	20	FSM	ENSMUSG00000033335.18	ENSMUST00000091087.13	3450	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	221.967630092463	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTACTGGTGGCTACGTG	5905	False	NA	6	True	AATAAA	-16	NA	21336266	21418422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21390194_21390334_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
transcript_1367.nic	chr1	-	1070	7	NIC	ENSMUSG00000026049.12	novel	935	7	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_6	127.50348579113	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGGTTGGTTAATTTGAT	NA	False	NA	NA	False	AATAAA	-2	NA	44141652	44126019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059_44141118_44141487
transcript_136721.known	chr9	-	1378	4	FSM	ENSMUSG00000032180.12	ENSMUST00000034698.9	1378	4	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	14.8548533034381	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTGGTGACTGGGCT	NA	False	NA	-5	True	AATAAA	-19	NA	21421548	21418850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21419688_21420226_21420411_21420549_21420648_21421289
transcript_136722.known	chr9	-	1013	4	FSM	ENSMUSG00000032180.12	ENSMUST00000214576.2	1013	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	250.551835399827	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCCCCCCACCCTCCA	NA	False	NA	NA	False	NA	NA	NA	21421530	21419162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21419688_21420226_21420411_21420584_21420648_21421289
transcript_136724.known	chr9	-	1213	3	FSM	ENSMUSG00000032180.12	ENSMUST00000214285.2	1213	3	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_2	267.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTGCCTGGTGACTGGG	NA	False	NA	-7	True	AATAAA	-17	NA	21421483	21418852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21419688_21420226_21420411_21421289
transcript_136725.known	chr9	-	1454	3	FSM	ENSMUSG00000032180.12	ENSMUST00000213316.2	1454	3	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_2	0.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGTGACTGGGCTTA	NA	False	NA	-3	True	AATAAA	-21	NA	21421483	21418848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21419688_21420226_21420648_21421289
transcript_136731.known	chr9	+	3220	16	FSM	ENSMUSG00000032185.16	ENSMUST00000034703.15	3220	16	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_5	67.5234938537856	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGCAAAACAGCAGGGTA	NA	False	NA	20	True	AATAAA	-22	NA	21458189	21500763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499146_21499216_21499344
transcript_136734.known	chr9	+	3320	15	FSM	ENSMUSG00000032185.16	ENSMUST00000115394.8	3320	15	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_5	69.6438461468237	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGCAAAACAGCAGGGTA	NA	False	NA	20	True	AATAAA	-22	NA	21458218	21500763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499146
transcript_136735.known	chr9	+	3152	15	FSM	ENSMUSG00000032185.16	ENSMUST00000115395.10	3152	15	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_14	283.604972827073	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCCAGGGTCCAAGAATC	NA	False	NA	40	True	AATAAA	-42	NA	21458208	21500783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499344
transcript_136738.known	chr9	+	3585	14	FSM	ENSMUSG00000032185.16	ENSMUST00000154049.8	3585	14	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_5	70.328224573052	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGCAAAACAGCAGGGTA	NA	False	NA	20	True	AATAAA	-22	NA	21458218	21500763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803
transcript_136745.nic	chr9	-	1962	10	NIC	ENSMUSG00000032182.16	novel	2014	9	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	17.7478915457862	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6062	False	NA	-20	True	AATAAA	-13	NA	21504130	21499981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
transcript_136746.known	chr9	-	1894	10	FSM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_9	21.338541031039	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6124	False	NA	-16	True	AATAAA	-17	NA	21504068	21499977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
transcript_136750.nic	chr9	-	2094	9	ISM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	-56	4	0	0	intron_retention	FALSE	canonical	3	66	junction_4	11.9032558571174	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6068	False	NA	-20	True	AATAAA	-13	NA	21504124	21499981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
transcript_136751.known	chr9	-	1883	9	FSM	ENSMUSG00000032182.16	ENSMUST00000213809.2	1883	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	29.6690073982936	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6080	False	NA	-20	True	AATAAA	-13	NA	21504112	21499981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21504022
transcript_136754.known	chr9	-	2014	9	FSM	ENSMUSG00000032182.16	ENSMUST00000180365.9	2014	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	18.6463803457937	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6086	False	NA	-20	True	AATAAA	-13	NA	21504106	21499981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
transcript_136755.nic	chr9	-	1973	9	NIC	ENSMUSG00000032182.16	novel	2014	9	NA	NA	-7	0	intron_retention	FALSE	canonical	3	27	junction_8	22.544400635191	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6117	False	NA	-20	True	AATAAA	-13	NA	21504075	21499981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
transcript_136757.known	chr9	-	2174	8	FSM	ENSMUSG00000032182.16	ENSMUST00000034700.15	2174	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	11.8062591493682	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6068	False	NA	-16	True	AATAAA	-17	NA	21504124	21499977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
transcript_136761.known	chr9	+	3170	2	FSM	ENSMUSG00000048429.11	ENSMUST00000062125.11	3170	2	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	0	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTGTTTCTTGCAATCC	4511	False	NA	34	True	ATTAAA	-43	NA	21504017	21507266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21504367_21504445
transcript_13677.nic	chr10	-	3200	17	NIC	ENSMUSG00000020166.16	novel	2955	17	NA	NA	-401	0	intron_retention	FALSE	canonical	3	93	junction_16	168.781466973569	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417817	116321070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385011_116417357
transcript_136770.known	chr9	+	5405	34	FSM	ENSMUSG00000032187.17	ENSMUST00000174008.8	5405	34	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_29	114.960846930185	382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGGCTCCCTGGACTC	1332	False	NA	22	True	AATAAA	-19	NA	21527559	21614662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597317_21597572_21611098_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
transcript_136775.known	chr9	+	4627	18	FSM	ENSMUSG00000032193.10	ENSMUST00000034713.9	4627	18	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_7	34.4140270749526	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCATCCTTATGTGTG	1773	False	NA	16	True	ATTAAA	-15	NA	21634778	21661215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
transcript_136781.known	chr9	+	4318	17	FSM	ENSMUSG00000032193.10	ENSMUST00000213114.2	4318	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	82.5801693810324	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTTGTCATCCTTATG	1922	False	NA	12	True	ATTAAA	-11	NA	21634927	21661211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21657027_21657202_21657657_21657736_21658444_21658603_21659436
transcript_13679.nic	chr10	-	3515	17	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-646	0	intron_retention	FALSE	canonical	3	100	junction_15	145.637593339598	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116418062	116321070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116417357
transcript_136790.known	chr9	+	2854	10	FSM	ENSMUSG00000032193.10	ENSMUST00000217111.2	2854	10	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_7	24.2807651352991	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1929	False	NA	NA	False	NA	NA	NA	21634934	21652298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944
transcript_136793.known	chr9	+	2383	9	FSM	ENSMUSG00000032193.10	ENSMUST00000215917.2	2383	9	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_7	25.7533371623951	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	1889	False	NA	NA	False	NA	NA	NA	21634894	21651382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650854_21650944
transcript_13680.known	chr10	-	2955	17	FSM	ENSMUSG00000020166.16	ENSMUST00000169576.8	2955	17	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_15	182.219465463353	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	-5	True	AATAAA	-19	NA	116417401	116321069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373354_116384937_116385011_116417357
transcript_136803.nnic	chr9	-	1239	6	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-20	46367	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	894.372495104808	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCTGGAGAGATGGTTC	NA	False	NA	NA	False	NA	NA	NA	21671619	21620370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_21620570_21667083_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
transcript_136805.nnic	chr9	-	1188	6	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-10	8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	894.372495104808	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGCAGCATGGTGG	NA	False	NA	NA	False	NA	NA	NA	21671609	21666729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_21666902_21667097_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
transcript_136811.known	chr9	-	1366	5	FSM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_4	159.647071692531	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTGTGTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	21671599	21666737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
transcript_136823.known	chr9	-	356	4	FSM	ENSMUSG00000074476.7	ENSMUST00000214149.2	356	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	1018.23518348606	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCAGGGATGATCAAGGG	NA	False	NA	NA	False	AGTAAA	-22	NA	21671598	21668434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21668490_21668585_21668691_21668980_21669126_21671547
transcript_136824.known	chr9	-	627	4	FSM	ENSMUSG00000074476.7	ENSMUST00000216057.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	994.029174622154	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671599	21667399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21667592_21668585_21668691_21668980_21669126_21671414
transcript_136827.known	chr9	-	1696	3	FSM	ENSMUSG00000074476.7	ENSMUST00000217382.2	1696	3	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_2	208.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTTGTCTGCATGTGT	NA	False	NA	0	True	NA	NA	NA	21671578	21667303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21668691_21668980_21669126_21671414
transcript_136837.known	chr9	-	5040	12	FSM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	126.069113932015	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCCTCGTGTCTGTTTG	NA	False	NA	-12	True	AATAAA	-15	NA	21710040	21678079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375_21707491_21709777
transcript_136842.nic	chr9	-	3033	8	ISM	ENSMUSG00000032194.10	ENSMUST00000034717.7	5040	12	-22	7123	-22	-5845	5prime_fragment	FALSE	canonical	0	0	junction_7	142.480789969048	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAAGAAAAATCTGG	NA	False	NA	NA	False	GATAAA	-23	NA	21710062	21685202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375_21707491_21709777
transcript_136844.nnic	chr9	-	3389	7	NNC	ENSMUSG00000032194.10	novel	399	4	NA	NA	0	-10095	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	194.257918471523	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTAAAAAAAAGTGACAT	NA	False	NA	NA	False	NA	NA	NA	21710040	21689452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_21689618_21689849_21691234_21691674_21691766_21691855_21692000_21705752_21706980_21707375_21707491_21709777
transcript_136853.nic	chr9	-	6442	49	NIC	ENSMUSG00000032198.10	novel	6880	50	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	1	53	junction_27	42.5310701379983	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	6269	False	NA	NA	False	TTTAAA	-18	NA	21763918	21711475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21737078_21737172_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_136854.nic	chr9	-	6471	49	NIC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	1	57	junction_26	41.3909156615984	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	6252	False	NA	NA	False	TTTAAA	-18	NA	21763935	21711475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21740769_21740875_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_136876.nic	chr9	-	4049	22	ISM	ENSMUSG00000032198.10	ENSMUST00000217515.2	3130	24	-126	4787	-109	-4787	5prime_fragment	FALSE	canonical	3	152	junction_8	19.8113552266968	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGTAAAATTAAGATTAAG	6147	False	NA	NA	False	AAAACA	-7	NA	21764040	21740328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_136877.nic	chr9	-	3080	22	ISM	ENSMUSG00000032198.10	ENSMUST00000217515.2	3130	24	-41	5671	-24	-5671	5prime_fragment	FALSE	canonical	3	152	junction_8	19.8113552266968	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAGTTTATGTGTACAT	6232	False	NA	NA	False	NA	NA	NA	21763955	21741212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_136886.nnic	chr9	-	1820	15	NNC	ENSMUSG00000032198.10	novel	1868	15	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	52.93955929903	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATTGCCTCTGTTCTCTT	6252	False	NA	-5	True	NA	NA	NA	21763935	21748643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_21748776_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_136888.known	chr9	-	1868	15	FSM	ENSMUSG00000032198.10	ENSMUST00000213296.2	1868	15	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	50.5494807094989	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGATTGCCTCTGTTCTCT	6275	False	NA	-6	True	NA	NA	NA	21763912	21748644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21748848_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_136891.nic	chr9	-	2180	14	ISM	ENSMUSG00000032198.10	ENSMUST00000213296.2	1868	15	-6	893	-4	-893	5prime_fragment	FALSE	canonical	3	163	junction_1	19.9946738470154	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCGGCTCCTACCTTTTT	6269	False	NA	NA	False	NA	NA	NA	21763918	21749537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_136895.known	chr9	-	6467	49	FSM	ENSMUSG00000032198.10	ENSMUST00000034728.9	6467	49	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_31	48.2352452972812	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	6256	False	NA	NA	False	TTTAAA	-18	NA	21763931	21711475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714415_21715905_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21740769_21740875_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743237_21744139_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_136900.known	chr9	-	3835	5	FSM	ENSMUSG00000019066.14	ENSMUST00000115351.10	3835	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	8.45576726264388	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTATATTGCTTAATTT	2233	False	NA	NA	False	AATAAA	-25	NA	21829488	21818786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000_21827240_21829317
transcript_136901.known	chr9	-	3886	5	FSM	ENSMUSG00000019066.14	ENSMUST00000122211.8	3886	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	14.6692706021806	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCCATCATGCCTGTGC	2286	False	NA	NA	False	AATAAA	-6	NA	21829435	21818805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000_21827363_21829317
transcript_136904.known	chr9	+	1531	13	FSM	ENSMUSG00000006241.17	ENSMUST00000006403.7	1531	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	2.13924960883224	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTTGCACCTGCTGGTT	3126	False	NA	NA	False	AATAAA	-26	NA	21838766	21847168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21839025_21840388_21840523_21840603_21840831_21842605_21842640_21842994_21843084_21843160_21843243_21844099_21844287_21844841_21844910_21844991_21845069_21845413_21845530_21845730_21845814_21846825_21846925_21847091
transcript_136905.known	chr9	+	1519	13	FSM	ENSMUSG00000006241.17	ENSMUST00000170304.9	1519	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.53174292182722	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTTTGCACCTGCTGGT	3151	False	NA	NA	False	AATAAA	-25	NA	21838791	21847167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21839039_21840388_21840523_21840603_21840831_21842605_21842640_21842994_21843084_21843160_21843243_21844099_21844287_21844841_21844910_21844991_21845069_21845413_21845530_21845730_21845814_21846825_21846925_21847091
transcript_136909.known	chr9	-	862	4	FSM	ENSMUSG00000040883.19	ENSMUST00000238930.2	862	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	87.3473271231327	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGCCATGGTCATTTTT	NA	False	NA	-7	True	AATAAA	-12	NA	21838831	21832305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838582
transcript_136914.known	chr9	-	1707	1	FSM	ENSMUSG00000040883.19	ENSMUST00000215650.2	1707	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	21838852	21837145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21837100_21838900
transcript_136915.nic	chr9	+	2644	10	NIC	ENSMUSG00000040563.14	novel	2626	10	NA	NA	-31	0	combination_of_known_junctions	TRUE	canonical	3	12	junction_8	8.37692303332034	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGCCTTCTGCCTGCCT	66	False	NA	NA	False	AATAAA	-19	NA	21848297	21860203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_21848455_21849690_21849861_21850594_21850675_21851980_21852170_21852297_21852434_21854646_21854919_21855691_21855869_21858241_21858349_21858676_21858729_21858899
transcript_136916.known	chr9	+	2626	10	FSM	ENSMUSG00000040563.14	ENSMUST00000046371.13	2626	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	8.89999306422257	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTGGCCTTCTGCCTG	97	False	NA	NA	False	AATAAA	-16	NA	21848328	21860200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21848455_21849690_21849861_21850594_21850675_21851980_21852170_21852297_21852434_21854646_21854919_21855691_21855869_21858241_21858365_21858676_21858729_21858899
transcript_136919.known	chr9	+	1838	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	8	True	NA	NA	NA	21867050	21869560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21867301_21867972
transcript_136920.known	chr9	-	1761	8	FSM	ENSMUSG00000006235.7	ENSMUST00000006397.7	1761	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	5.16661180572146	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTTATTTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	21874802	21870192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21870967_21871056_21871145_21871819_21871908_21871985_21872140_21872743_21872902_21872986_21873163_21873499_21873633_21874612
transcript_136926.known	chr9	-	2103	13	FSM	ENSMUSG00000039632.14	ENSMUST00000115336.10	2103	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.0138409955991	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGTATTCACCTCTTT	4301	False	NA	NA	False	AATAAA	-16	NA	21913833	21901166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21901541_21901692_21901778_21902097_21902254_21902903_21903061_21903143_21903305_21904167_21904324_21904833_21904957_21906108_21906235_21906322_21906425_21906503_21906675_21909181_21909260_21909340_21909463_21913541
transcript_136936.known	chr9	+	2012	18	FSM	ENSMUSG00000003402.15	ENSMUST00000003493.9	2012	18	0	0	0	0	multi-exon	TRUE	canonical	3	461	junction_11	125.012497645132	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914313	21925518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
transcript_136937.known	chr9	+	1983	18	FSM	ENSMUSG00000003402.15	ENSMUST00000115331.10	1983	18	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_11	154.653737577573	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGGCTGTTTTTTA	NA	False	NA	18	True	AATAAA	-14	NA	21914361	21925516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
transcript_136968.known	chr9	-	1888	9	FSM	ENSMUSG00000038895.17	ENSMUST00000179605.9	1888	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	12.5299640861417	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTCAGCCTCTATTTATT	9461	False	NA	NA	False	NA	NA	NA	21982637	21966995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21967190_21967288_21967389_21967709_21967825_21968582_21968695_21968796_21968999_21969099_21969712_21976996_21977213_21979443_21979488_21982344
transcript_136973.known	chr9	-	1673	9	FSM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_8	44.5222907654132	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5896	False	NA	-9	True	AATAAA	-15	NA	21996723	21983541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996644
transcript_136974.known	chr9	-	1676	9	FSM	ENSMUSG00000066839.13	ENSMUST00000180180.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_8	49.2772767104677	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5885	False	NA	-9	True	AATAAA	-15	NA	21996734	21983541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996652
transcript_13698.known	chr10	-	2120	16	FSM	ENSMUSG00000020166.16	ENSMUST00000169921.8	2120	16	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_15	117.305110242005	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	-12	True	AATAAA	-19	NA	116417416	116321691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385011_116417357
transcript_136981.known	chr9	-	1462	8	FSM	ENSMUSG00000066839.13	ENSMUST00000179422.8	1462	8	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_7	78.0418516710419	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5921	False	NA	-9	True	AATAAA	-15	NA	21996698	21983541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996644
transcript_136982.nnic	chr9	-	1584	8	NIC	ENSMUSG00000066839.13	novel	1673	9	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	2	13	junction_6	84.8771020298148	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5867	False	NA	-9	True	AATAAA	-15	NA	21996752	21983541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21995318_21995505_21996644
transcript_136986.nnic	chr9	-	2008	7	NNC	ENSMUSG00000003410.9	novel	5014	7	NA	NA	-5	-1547	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1.73205080756888	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAAGAGGGGAGTGGGC	275	False	NA	NA	False	NA	NA	NA	21963324	21929303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_21930130_21935969_21936009_21937468_21937695_21937803_21937958_21947607_21947712_21947936_21948157_21962885
transcript_136987.known	chr9	-	5014	7	FSM	ENSMUSG00000003410.9	ENSMUST00000003501.9	5014	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCAGGTGCTCTGTGTGC	293	False	NA	0	True	AATAAA	-17	NA	21963306	21926300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21930151_21935969_21936009_21937468_21937695_21937803_21937958_21947607_21947712_21947936_21948157_21962885
transcript_136990.known	chr9	-	2534	7	FSM	ENSMUSG00000038895.17	ENSMUST00000216916.2	2534	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	10.2102889283311	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGCTCTCTTCCTGACC	9526	False	NA	48	True	NA	NA	NA	21982572	21966706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21967190_21967288_21967825_21968582_21968695_21968796_21969712_21976996_21977213_21979443_21979488_21982344
transcript_136994.known	chr9	-	3037	6	FSM	ENSMUSG00000003410.9	ENSMUST00000215901.2	3037	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.95959179422654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAGTTTCCTCTTCATG	280	False	NA	NA	False	NA	NA	NA	21963319	21934106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21936009_21937468_21937695_21937803_21937958_21947607_21947712_21947936_21948154_21962885
transcript_136997.known	chr9	-	893	1	FSM	ENSMUSG00000066839.13	ENSMUST00000217445.2	893	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGTT	5888	False	NA	NA	False	NA	NA	NA	21996731	21995838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21995800_21996700
transcript_136998.known	chr9	-	2108	9	FSM	ENSMUSG00000038895.17	ENSMUST00000043922.7	2108	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	12.3129758791285	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAAGCCTGGATAATTGT	9457	False	NA	-1	True	ATTAAA	-22	NA	21982641	21966755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_21967190_21967288_21967389_21967709_21967825_21968582_21968695_21968796_21968975_21969099_21969712_21976996_21977213_21979443_21979488_21982344
transcript_136999.known	chr9	+	2381	7	FSM	ENSMUSG00000001349.6	ENSMUST00000001384.6	2381	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.49071198499986	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAACAAAAACTGAATC	7128	False	NA	NA	False	NA	NA	NA	22010563	22020926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22010715_22012436_22012559_22015601_22015669_22016665_22016804_22016965_22017077_22019046_22019194_22019281
transcript_1370.known	chr1	-	1046	6	FSM	ENSMUSG00000026049.12	ENSMUST00000152239.8	1046	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	165.218158808286	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGTACGGTTGGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	44140832	44126026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44140626
transcript_13700.known	chr10	-	2800	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417405	116321070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
transcript_137000.known	chr9	-	810	3	FSM	ENSMUSG00000013822.8	ENSMUST00000213233.2	810	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	229.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTCGTGGCTGCAGAT	8030	False	NA	NA	False	NA	NA	NA	22028382	22024733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22024976_22025103_22025240_22027950
transcript_137002.known	chr9	-	567	3	FSM	ENSMUSG00000013822.8	ENSMUST00000214394.2	567	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	229.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCGTGGCTGCAGATGT	7993	False	NA	NA	False	NA	NA	NA	22028419	22024731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22024976_22025103_22025240_22028232
transcript_137003.known	chr9	-	888	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_2	52.5	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGCCGCTGTACTTCTT	7944	False	NA	-8	True	AATAAA	-15	NA	22028468	22024286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22024976_22025103_22025240_22028405
transcript_137004.known	chr9	-	1447	6	FSM	ENSMUSG00000001348.16	ENSMUST00000217643.2	1447	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	116.082039954508	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	8896	False	NA	-30	True	AATAAA	-10	NA	22043127	22038033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818_22041905_22043032
transcript_137005.nnic	chr9	-	1743	6	NNC	ENSMUSG00000001348.16	novel	1447	6	NA	NA	-444	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_5	93.858617079094	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	8452	False	NA	-23	True	AATAAA	-17	NA	22043571	22038026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032_22043161_22043229
transcript_137006.nnic	chr9	-	1577	6	NNC	ENSMUSG00000001348.16	novel	1376	5	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	119.877604246999	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	4948	False	NA	-23	True	AATAAA	-17	NA	22047075	22038026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22045889_22046027_22046908
transcript_137007.known	chr9	-	1349	5	FSM	ENSMUSG00000001348.16	ENSMUST00000115315.3	1349	5	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_4	98.7734149455206	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	4541	False	NA	-23	True	AATAAA	-17	NA	22041894	22038026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818
transcript_137008.known	chr9	-	1419	5	FSM	ENSMUSG00000001348.16	ENSMUST00000213815.2	1419	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	92.7425873048623	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	9074	False	NA	-30	True	AATAAA	-10	NA	22042949	22038033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042796
transcript_137009.nnic	chr9	-	1366	5	NNC	ENSMUSG00000001348.16	novel	1349	5	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_4	83.7048385698222	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	9045	False	NA	-23	True	AATAAA	-17	NA	22042978	22038026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042885
transcript_137010.known	chr9	-	1356	5	FSM	ENSMUSG00000001348.16	ENSMUST00000069330.14	1356	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_4	52.4374627532645	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	8912	False	NA	-19	True	AATAAA	-21	NA	22043111	22038022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032
transcript_137011.known	chr9	+	695	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	0	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTCTAAGATTTGTT	NA	False	NA	44	True	AATAAA	-44	NA	22068141	22069654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22068210_22069027
transcript_137012.known	chr9	+	676	2	FSM	ENSMUSG00000010607.9	ENSMUST00000148088.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGGAACACGACCAGCC	NA	False	NA	11	True	AATAAA	-11	NA	22068241	22069621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22068324_22069027
transcript_137013.known	chr9	-	615	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	259	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	22097517	22096902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22096900_22097500
transcript_137019.known	chr9	+	1425	6	FSM	ENSMUSG00000057982.9	ENSMUST00000072465.9	1425	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	52.9694251431899	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGTTTTG	797	False	NA	14	True	NA	NA	NA	22137066	22154650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22150550_22154329
transcript_137022.known	chr9	+	1766	5	FSM	ENSMUSG00000057982.9	ENSMUST00000213371.2	1766	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	49.3273504254992	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCTGGCCGGCCATGC	749	False	NA	34	True	NA	NA	NA	22137018	22150989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837
transcript_137027.known	chr9	+	1313	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	21.3717102731625	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGACAGACTAAATAATGC	778	False	NA	NA	False	NA	NA	NA	22137047	22150739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
transcript_137036.known	chr9	+	597	2	FSM	ENSMUSG00000057982.9	ENSMUST00000213350.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTACATGCTCAAGCTA	749	False	NA	NA	False	NA	NA	NA	22137018	22146802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22137129_22146315
transcript_137038.known	chr9	-	3574	5	FSM	ENSMUSG00000062794.9	ENSMUST00000086281.5	3574	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	12.747548783982	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTAGTCTGAGATGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	22171191	22158725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22161837_22162823_22162928_22165150_22165244_22169340_22169468_22171052
transcript_137043.known	chr9	-	3238	8	FSM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	8.19407451411428	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGTGTAAATTAAGCATT	NA	False	NA	-8	True	AATAAA	-17	NA	22218934	22188043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834_22201939_22209712_22209806_22216807_22216899_22218844
transcript_137044.known	chr9	-	2534	1	FSM	ENSMUSG00000066829.8	ENSMUST00000214499.2	2534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAGAAAAAAAAAAATCATT	8619	False	NA	NA	False	AATAAA	-45	NA	22195199	22192665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22192700_22195200
transcript_137046.nic	chr9	-	4687	25	NIC	ENSMUSG00000036777.9	novel	4605	24	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_4	113.4790423627	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATCAGTTATTTAAGAAAT	7155	False	NA	-3	True	AATAAA	-20	NA	22300512	22243307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22260542_22260597_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
transcript_137056.known	chr9	-	4605	24	FSM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_4	55.8021416884086	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATCAGTTATTTAAGAAAT	7183	False	NA	-3	True	AATAAA	-20	NA	22300484	22243307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
transcript_137070.nic	chr9	-	2372	12	ISM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	-28	28403	-28	7545	5prime_fragment	FALSE	canonical	3	462	junction_5	34.2699540715495	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGGTATGCTCTGGCATA	7155	False	NA	NA	False	AAGAAA	-38	NA	22300512	22271710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
transcript_137077.nic	chr9	-	1569	7	ISM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	-28	40184	-28	-4236	5prime_fragment	FALSE	canonical	3	471	junction_1	29.6390320729646	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATGAAAAGTCAAGAAGCA	7155	False	NA	NA	False	NA	NA	NA	22300512	22283491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
transcript_137079.nic	chr9	-	1410	6	ISM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	-28	41220	-28	-5272	5prime_fragment	FALSE	canonical	3	472	junction_2	28.9095140049085	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATCACTCCAAATACAAAAG	7155	False	NA	NA	False	AGTAAA	-39	NA	22300512	22284527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
transcript_137092.known	chr9	-	1134	6	FSM	ENSMUSG00000032239.11	ENSMUST00000034763.10	1134	6	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_2	10.1311401135312	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGTCATTATTAATACAG	9510	False	NA	-1	True	AATAAA	-23	NA	22379644	22359606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22360151_22361097_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379369
transcript_137095.nic	chr9	-	616	5	ISM	ENSMUSG00000032239.11	ENSMUST00000034763.10	1134	6	-45	1510	-35	-1348	5prime_fragment	FALSE	canonical	3	365	junction_1	10.256095748383	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATGAAAAGGATGTAAGG	9465	False	NA	NA	False	AATAAA	-2	NA	22379689	22361116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379369
transcript_137096.known	chr9	-	525	4	FSM	ENSMUSG00000032239.11	ENSMUST00000217370.2	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	7.07106781186548	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGTGTGGCTCCTTTGA	9688	False	NA	NA	False	NA	NA	NA	22379466	22364899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_22365167_22368668_22368799_22370006_22370038_22379369
transcript_137098.known	chr9	+	2223	7	FSM	ENSMUSG00000036411.11	ENSMUST00000058868.9	2223	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	3.62476052848859	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGTTCAGTTCTTATT	NA	False	NA	NA	False	ATTAAA	-14	NA	22322808	22355977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22323046_22335408_22336104_22341651_22341796_22342971_22343105_22346390_22346697_22351162_22351261_22355367
transcript_1371.known	chr1	-	960	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACGGTTGGTTAATTTGA	NA	False	NA	NA	False	AATAAA	-1	NA	44141601	44126020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
transcript_137103.nic	chr9	+	3587	23	NIC	ENSMUSG00000035919.17	novel	3425	23	NA	NA	-14	0	intron_retention	FALSE	canonical	3	12	junction_1	19.496609156339	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTGGACTGAATTTATAA	NA	False	NA	3	True	AATAAA	-20	NA	22386996	22799576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_22387487_22387865_22387922_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
transcript_137104.known	chr9	+	3425	23	FSM	ENSMUSG00000035919.17	ENSMUST00000150395.8	3425	23	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	19.2294217582595	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22387017	22799570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22387352_22387865_22387922_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
transcript_137105.known	chr9	+	3495	22	FSM	ENSMUSG00000035919.17	ENSMUST00000147712.8	3495	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	15.2048745018425	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATAACTGGACTGAAT	NA	False	NA	-3	True	AATAAA	-14	NA	22387026	22799570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22387487_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
transcript_137108.known	chr9	+	3382	22	FSM	ENSMUSG00000035919.17	ENSMUST00000039798.16	3382	22	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	13.43515542748	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTGGACTGAATTTATAA	NA	False	NA	3	True	AATAAA	-20	NA	22387010	22799576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_22387352_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
transcript_137120.known	chr9	-	3489	23	FSM	ENSMUSG00000043067.16	ENSMUST00000142064.8	3489	23	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_1	49.1071732317176	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCATGTGTTTTCTGCC	NA	False	NA	-5	True	AATAAA	-19	NA	24414436	24323073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_24324283_24325533_24325720_24332376_24332503_24333555_24333656_24334308_24334484_24336021_24336142_24337429_24337455_24341726_24341777_24343655_24343728_24345634_24345737_24349924_24350006_24350424_24350485_24352050_24352138_24359082_24359161_24361951_24362052_24365101_24365194_24373872_24373931_24385069_24385164_24386628_24386750_24393224_24393363_24396309_24396398_24397000_24397026_24414134
transcript_137122.known	chr9	-	2781	8	FSM	ENSMUSG00000008429.9	ENSMUST00000008573.9	2781	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	20.4550278236258	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACAGCCTTATGGGATAT	NA	False	NA	NA	False	AATAAA	-14	NA	25063116	25019427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_25020302_25020735_25020851_25021706_25022031_25025116_25025240_25036167_25036320_25041831_25041946_25044490_25044569_25062115
transcript_137124.nnic	chr9	-	2787	8	NNC	ENSMUSG00000008429.9	novel	2781	8	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	36.7145636454183	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACAGCCTTATGGGATAT	NA	False	NA	NA	False	AATAAA	-14	NA	25063151	25019427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_25020302_25020735_25020851_25021735_25022031_25025116_25025240_25036167_25036320_25041831_25041946_25044490_25044569_25062115
transcript_137135.known	chr9	+	2533	14	FSM	ENSMUSG00000001833.18	ENSMUST00000115272.9	2533	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	485.66204432895	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCTTGTATATTCT	NA	False	NA	22	True	AATAAA	-22	NA	25163734	25219867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_25163996_25176597_25176603_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
transcript_137147.known	chr9	+	1727	7	FSM	ENSMUSG00000001833.18	ENSMUST00000213980.2	1727	7	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_6	625.191881656255	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGGATTTGTCTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	25163944	25202098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_25163996_25175498_25175504_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25200873
transcript_137148.known	chr9	+	2516	14	FSM	ENSMUSG00000001833.18	ENSMUST00000165594.4	2516	14	0	0	0	0	multi-exon	FALSE	canonical	1	89	junction_1	420.498140769412	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	17	True	AATAAA	-17	NA	25163746	25219862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_25163996_25175498_25175504_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
transcript_137153.known	chr9	+	2723	8	FSM	ENSMUSG00000036611.6	ENSMUST00000040677.6	2723	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	5.11101251999952	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGAGTGTGGAATGGTTT	NA	False	NA	15	True	AATAAA	-23	NA	25392842	25515406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_25393193_25393576_25394616_25458847_25458900_25493187_25493299_25497957_25498093_25500730_25500870_25505856_25506052_25514704
transcript_137155.known	chr9	-	3688	19	FSM	ENSMUSG00000036395.16	ENSMUST00000066560.13	3688	19	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	5.66884489725515	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTTTTTGTGTCTGGGG	NA	False	NA	NA	False	AATAAA	-15	NA	26717764	26674340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_26676120_26676397_26676515_26676875_26676988_26677280_26677369_26678372_26678452_26678690_26678763_26679015_26679157_26679714_26679822_26680331_26680413_26681035_26681174_26682323_26682409_26685268_26685340_26689314_26689397_26691969_26692063_26703077_26703187_26705378_26705475_26706081_26706151_26707701_26707900_26717593
transcript_137157.known	chr9	-	2859	11	FSM	ENSMUSG00000031969.17	ENSMUST00000060513.8	2859	11	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_10	23.6862829502647	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTATTTTCATGTT	9248	False	NA	NA	False	AGTAAA	-25	NA	26910845	26885439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
transcript_137160.nic	chr9	-	2084	11	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	0	412	combination_of_known_junctions	FALSE	canonical	3	47	junction_10	61.1735236846791	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCTAAGGCAGTTTGT	9231	False	NA	3	True	ATTAAA	-31	NA	26910862	26886259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903585_26910689
transcript_137162.nic	chr9	-	1891	11	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	0	219	combination_of_known_junctions	FALSE	canonical	3	47	junction_10	61.1735236846791	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATTTGGATTTTTTATT	9231	False	NA	-15	True	AATAAA	-24	NA	26910862	26886452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903585_26910689
transcript_137171.nic	chr9	-	2524	10	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-9	219	intron_retention	FALSE	canonical	3	181	junction_9	24.6986779273309	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATTTGGATTTTTTATT	9222	False	NA	-15	True	AATAAA	-24	NA	26910871	26886452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_26887057_26888851_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
transcript_137183.known	chr9	+	918	8	FSM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	172.705955134082	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	34	True	AATAAA	-15	NA	26911017	26918630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
transcript_137185.known	chr9	+	775	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_6	112.305634567263	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	False	NA	30	True	AATAAA	-11	NA	26911005	26918626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
transcript_13719.known	chr10	-	2693	15	FSM	ENSMUSG00000020166.16	ENSMUST00000168036.8	2693	15	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_13	136.561565692876	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGGCTTTGATTTGAA	NA	False	NA	-1	True	AATAAA	-23	NA	116417416	116321065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
transcript_137190.known	chr9	+	774	5	FSM	ENSMUSG00000035443.11	ENSMUST00000214910.2	774	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	235.013829380315	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTATCATTGAGTTTTA	NA	False	NA	3	True	AATAAA	-17	NA	26911005	26917227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915061_26916441_26916511_26916852
transcript_137195.known	chr9	+	1107	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213683.2	1107	7	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_6	186.06510210736	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
transcript_137196.known	chr9	-	3575	6	FSM	ENSMUSG00000031988.11	ENSMUST00000034470.11	3575	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	12.273548794053	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATTCTGTGGTCTTTCCT	NA	False	NA	-3	True	ATTAAA	-42	NA	26941361	26919066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_26921334_26921659_26921803_26924020_26924197_26926452_26926618_26930613_26930771_26940694
transcript_137200.known	chr9	+	5499	36	FSM	ENSMUSG00000035024.17	ENSMUST00000073127.14	5499	36	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	46.2265053396681	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCTAGCATTTATTATA	NA	False	NA	NA	False	AATAAA	-15	NA	26941470	27006607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_26941796_26941918_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
transcript_137212.nnic	chr9	-	2036	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4301	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27033545	27008679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
transcript_137214.known	chr9	-	1942	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27066689	27008679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
transcript_137217.nnic	chr9	-	1303	5	NNC	ENSMUSG00000031990.16	novel	1234	5	NA	NA	4301	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_4	72.4844810976805	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	27033545	27011963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
transcript_137218.known	chr9	-	1234	5	FSM	ENSMUSG00000031990.16	ENSMUST00000167074.2	1234	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	57.1401785086466	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	27066714	27011963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
transcript_137220.known	chr9	+	2857	15	FSM	ENSMUSG00000034275.19	ENSMUST00000115247.8	2857	15	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	6.52311431818907	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTCCATTTATCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	27210523	27241431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_27210814_27220699_27220898_27222862_27223010_27228650_27228803_27229104_27229223_27230501_27230644_27230819_27230966_27233468_27233612_27233912_27234054_27234139_27234257_27234504_27234656_27235472_27235585_27238141_27238318_27239775_27240003_27240834
transcript_137222.known	chr9	+	5762	11	FSM	ENSMUSG00000031993.8	ENSMUST00000164099.3	5762	11	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_9	7.52927619363243	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATAGTAGCCCGTGATTT	NA	False	NA	NA	False	NA	NA	NA	30338403	30378022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_30340553_30343530_30343670_30344625_30344727_30344831_30344952_30347107_30347239_30348070_30348168_30348645_30348827_30351391_30351522_30373526_30373712_30374515_30374604_30375581
transcript_137228.known	chr9	+	3631	9	FSM	ENSMUSG00000031994.14	ENSMUST00000068135.13	3631	9	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_2	5.53257399408268	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGTCTAGTCTGGTT	NA	False	NA	NA	False	ACTAAA	-18	NA	30853857	30874152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_30854898_30862561_30862802_30863890_30864027_30864651_30864820_30865762_30866068_30867791_30867976_30870209_30870383_30870497_30870674_30872943
transcript_137230.known	chr9	+	3581	8	FSM	ENSMUSG00000031994.14	ENSMUST00000163037.2	3581	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11.7525507435446	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	30854753	30875134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_30854898_30862561_30862802_30864651_30864820_30865762_30866068_30867791_30867976_30870209_30870383_30870497_30870674_30872943
transcript_137236.known	chr9	+	3157	6	FSM	ENSMUSG00000047412.17	ENSMUST00000216649.2	3157	6	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_3	111.276951791465	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATGAACTTTTGTGTAAT	NA	False	NA	32	True	ATTAAA	-35	NA	30941939	30981529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_30942255_30964535_30965610_30973336_30973422_30975528_30975639_30977954_30978039_30980040
transcript_137237.known	chr9	+	8861	6	FSM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_5	55.0694107468021	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTGTTGTTGTCATTG	NA	False	NA	83	True	ATTAAA	-28	NA	30941941	30987181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_30942255_30964535_30965610_30973336_30973422_30975474_30975639_30977954_30978039_30980040
transcript_137258.nnic	chr9	-	3592	19	NNC	ENSMUSG00000031995.10	novel	3259	19	NA	NA	10387	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_18	138.463894210729	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTGCTATACT	NA	False	NA	0	True	AGTAAA	-24	NA	31032636	31000697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31031995
transcript_137260.known	chr9	-	3259	19	FSM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_11	45.3756610671839	2195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTGCTATACT	NA	False	NA	0	True	AGTAAA	-24	NA	31043149	31000697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
transcript_137321.known	chr9	-	686	6	FSM	ENSMUSG00000031995.10	ENSMUST00000214418.2	686	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	230.510216693317	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGACGCCGACTCTGTG	NA	False	NA	NA	False	NA	NA	NA	31043023	31017439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31042841
transcript_137327.known	chr9	-	3504	17	FSM	ENSMUSG00000031996.18	ENSMUST00000079758.9	3504	17	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	460.436596476648	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8737	False	NA	-9	True	AATAAA	-19	NA	31123089	31060852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31067485_31067522_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
transcript_137331.known	chr9	-	3634	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	0	0	0	0	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8739	False	NA	-9	True	AATAAA	-19	NA	31123087	31060852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
transcript_137341.known	chr9	-	3462	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8743	False	NA	-9	True	AATAAA	-19	NA	31123083	31060852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
transcript_137365.nic	chr9	-	805	5	ISM	ENSMUSG00000031996.18	ENSMUST00000213254.2	1961	14	-66	14309	-66	-2080	5prime_fragment	FALSE	canonical	3	1210	junction_2	120.982436741868	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGGAGGAAGAGGAAGA	8649	False	NA	-10	True	NA	NA	NA	31123177	31081794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
transcript_137366.known	chr9	-	1155	1	FSM	ENSMUSG00000031996.18	ENSMUST00000213273.2	1155	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCCA	8715	False	NA	NA	False	NA	NA	NA	31123111	31121956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_31122000_31123100
transcript_137369.nnic	chr9	+	4754	22	NNC	ENSMUSG00000042496.19	novel	6772	22	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_21	8.75776299624583	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCATGTTTCTTTCTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	31191833	31293021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957_31241162_31246612_31246686_31248600_31248719_31251625_31251756_31252537_31252781_31258088_31258437_31260407_31260564_31264582_31264763_31265770_31265882_31268437_31268639_31270303_31270448_31271044_31271216_31272116_31272258_31273626_31273796_31282119_31282224_31291755
transcript_137373.known	chr9	+	1952	7	FSM	ENSMUSG00000042496.19	ENSMUST00000117389.8	1952	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	4.53688586293873	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGAGCATTCTTGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	31191833	31241914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957
transcript_137374.nic	chr9	+	633	5	ISM	ENSMUSG00000042496.19	ENSMUST00000117389.8	1952	7	-7	4911	-7	-4900	5prime_fragment	FALSE	canonical	3	31	junction_2	2.44948974278318	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGGAAGAGGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	31191826	31237003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922
transcript_137376.known	chr9	+	5398	26	FSM	ENSMUSG00000042185.15	ENSMUST00000132329.8	5398	26	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	14.7460638815923	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGGCCTTTAATCATT	NA	False	NA	6	True	ATTAAA	-14	NA	31297492	31332629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308089_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
transcript_137377.nic	chr9	+	5226	26	NIC	ENSMUSG00000042185.15	novel	5398	26	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	9.17387595294377	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGGCCTTTAATCATT	NA	False	NA	6	True	ATTAAA	-14	NA	31297458	31332629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308295_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
transcript_137378.known	chr9	+	5161	26	FSM	ENSMUSG00000042185.15	ENSMUST00000086167.12	5161	26	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	11.7439346047226	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGGCCTTTAATCATT	NA	False	NA	6	True	ATTAAA	-14	NA	31297487	31332629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308331_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
transcript_137385.nic	chr9	+	1120	9	NIC	ENSMUSG00000042185.15	novel	5398	26	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	10.367467144872	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAGGAGGAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	31297458	31310481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308295_31308434_31309015_31309090_31309855_31309941_31310444
transcript_137393.known	chr9	+	645	4	FSM	ENSMUSG00000042185.15	ENSMUST00000131540.8	645	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.1255236758206	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAGTCACAGTACAAGC	NA	False	NA	NA	False	NA	NA	NA	31297499	31306041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_31297567_31300172_31300346_31303258_31303621_31305998
transcript_137394.known	chr9	-	1968	4	FSM	ENSMUSG00000032033.12	ENSMUST00000116615.5	1968	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTCTTGTTTGCTTGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	31824758	31757339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_31758352_31765408_31765494_31770026_31770340_31824200
transcript_137396.known	chr9	+	5080	8	FSM	ENSMUSG00000032035.17	ENSMUST00000034534.13	5080	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	2.24971653543195	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTGGCTCTGGCTTGAT	NA	False	NA	NA	False	ATTAAA	-24	NA	32607317	32669116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_32607762_32639970_32640091_32641350_32641552_32644244_32644323_32645235_32645485_32649394_32649656_32664094_32664214_32665508
transcript_137402.nnic	chr9	-	1563	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_5	6.15142259969188	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCGCTGTCTCATCAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	34901173	34889332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895961_34896290_34896441_34901035
transcript_137409.known	chr9	-	2095	11	FSM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	8.15107354892593	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTGGGGCTCTGTGT	NA	False	NA	-2	True	ATTAAA	-24	NA	35028169	34957871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_34958816_34959114_34959259_34963535_34963680_34964373_34964564_34964667_34964764_34965358_34965420_34965730_34965829_34965997_34966079_34966493_34966579_34966869_34966946_35027993
transcript_13741.known	chr10	-	2268	14	FSM	ENSMUSG00000020166.16	ENSMUST00000105265.8	2268	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_12	150.969411847597	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAATGTGTATATATTATA	NA	False	NA	-9	True	AATAAA	-12	NA	116417406	116321413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116384937_116385081_116417357
transcript_137412.nnic	chr9	-	1417	7	NNC	ENSMUSG00000032040.16	novel	1445	7	NA	NA	-7	-1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	302.376375105963	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACTGATGGTGTAGCCC	NA	False	NA	-8	True	AATAAA	-17	NA	35087364	35035708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_35036141_35037206_35037348_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
transcript_137416.known	chr9	-	1274	6	FSM	ENSMUSG00000032040.16	ENSMUST00000034539.12	1274	6	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	33.1083071146804	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTGTAGCCCAGTAG	NA	False	NA	-3	True	AATAAA	-22	NA	35087357	35035703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
transcript_137422.nnic	chr9	+	2894	15	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	-62	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	273.680396052902	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTTAGGTTCATATT	5450	False	NA	-1	True	AATAAA	-14	NA	35122388	35128306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127613
transcript_137425.known	chr9	+	2993	14	FSM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_4	138.528744373691	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAGGTTCATATTATTT	5512	False	NA	3	True	AATAAA	-18	NA	35122450	35128310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
transcript_137453.known	chr9	-	2212	11	FSM	ENSMUSG00000039048.16	ENSMUST00000154691.8	2212	11	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_9	80.1217199016596	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTCTTGAGAGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	35122232	35115501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120804_35121240_35121462_35122040
transcript_137458.known	chr9	-	2240	11	FSM	ENSMUSG00000039048.16	ENSMUST00000151658.8	2240	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	63.8767563359318	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122297	35115503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121235_35121462_35122102
transcript_137489.known	chr9	-	1860	8	FSM	ENSMUSG00000050471.18	ENSMUST00000059057.14	1860	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	33.1724006256	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCAATTTCTTTATGA	6364	False	NA	NA	False	TATAAA	-14	NA	35179101	35128315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
transcript_137491.known	chr9	-	2366	7	FSM	ENSMUSG00000032041.16	ENSMUST00000177129.8	2366	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	26.9160216640985	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7917	False	NA	NA	False	NA	NA	NA	35111284	35098080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111156
transcript_137492.known	chr9	-	1783	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176685.8	1783	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	13.6065752079239	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGTCATTAAAAA	7935	False	NA	NA	False	NA	NA	NA	35111266	35098639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110516_35110616_35111152
transcript_137498.known	chr9	-	1662	7	FSM	ENSMUSG00000050471.18	ENSMUST00000063782.12	1662	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	50.0954644209988	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGACAGCCTTCACCTTA	6389	False	NA	NA	False	TATAAA	-16	NA	35179076	35128260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35155909_35156003_35179018
transcript_137502.nic	chr9	+	693	4	ISM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	-62	4163	-62	0	5prime_fragment	FALSE	canonical	3	967	junction_3	36.5726066278513	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAAAAAAAGGGGGGCCA	5450	False	NA	NA	False	AAAAAG	-8	NA	35122388	35124147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015
transcript_137503.known	chr9	-	3260	9	FSM	ENSMUSG00000039048.16	ENSMUST00000143039.8	3260	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_7	18.9917745353087	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122266	35115503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711
transcript_137506.known	chr9	+	1821	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.6052921799554	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTAATTTTTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	35179160	35187261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
transcript_137508.nic	chr9	+	1895	6	NIC	ENSMUSG00000032044.5	novel	1821	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	136	junction_5	9.97196068985433	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTAATTTTTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	35179160	35187261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35184143_35184763_35184862_35186359
transcript_137512.known	chr9	+	7503	20	FSM	ENSMUSG00000038119.16	ENSMUST00000119129.10	7503	20	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_6	3.6977195937369	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGCCTGTGAAGAGGGATA	NA	False	NA	18	True	ATTAAA	-24	NA	35332853	35418948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_35333112_35363340_35363474_35363956_35364230_35365598_35365746_35366618_35366763_35367743_35368032_35368692_35368963_35375170_35375525_35381160_35381451_35382280_35382456_35384729_35384862_35388172_35388377_35389246_35389429_35389879_35389986_35394393_35394517_35398045_35398268_35400270_35400537_35403140_35403221_35414455_35414716_35415352
transcript_137517.known	chr9	-	6934	12	FSM	ENSMUSG00000032101.7	ENSMUST00000034612.7	6934	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	3.32533475603125	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCCATATGCCTGC	NA	False	NA	NA	False	AATAAA	-24	NA	35469824	35447942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35453356_35454893_35455083_35457109_35457273_35458076_35458315_35462580_35462759_35464132_35464248_35465602_35465706_35465812_35465906_35468061_35468198_35468677_35468726_35468980_35469048_35469633
transcript_137519.nic	chr9	+	964	5	NIC	ENSMUSG00000074452.14	novel	1690	11	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	4.49305018890286	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCTGCCTCATATATTC	NA	False	NA	NA	False	AATAAA	-18	NA	35481556	35557753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_35481827_35485525_35485684_35518890_35519016_35523067_35523168_35557442
transcript_137523.known	chr9	-	1973	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGAACCTTGTTTTA	NA	False	NA	51	True	ATTAAA	-17	NA	35481694	35472115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
transcript_137524.known	chr9	+	2019	4	FSM	ENSMUSG00000032103.11	ENSMUST00000034615.10	2019	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	6.68331255192114	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTAGGACCCTTTAGAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	35470755	35478697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_35470814_35476079_35476494_35476585_35477152_35477716
transcript_137528.known	chr9	-	3397	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGACAGCTATATTTACA	648	False	NA	NA	False	NA	NA	NA	36637954	36619777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
transcript_137532.known	chr9	-	2142	12	FSM	ENSMUSG00000032113.17	ENSMUST00000174105.8	2142	12	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	131.27033490643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGGGTCCTGTATTCC	721	False	NA	NA	False	ATTAAA	-12	NA	36637881	36620735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36637092_36637175_36637858
transcript_137547.known	chr9	-	5867	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	0	0	0	0	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	1339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTGACTGCTTTTTTCA	NA	False	NA	-1	True	ATTAAA	-16	NA	36678975	36640639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
transcript_13758.nic	chr10	-	2780	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-380	0	intron_retention	FALSE	canonical	3	67	junction_9	144.203246804255	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417796	116321070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
transcript_137581.known	chr9	-	891	3	FSM	ENSMUSG00000032116.19	ENSMUST00000138358.3	891	3	0	0	0	0	multi-exon	FALSE	canonical	3	1875	junction_2	55.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGTTAAGAGTACACAC	NA	False	NA	NA	False	NA	NA	NA	36678870	36673954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_36674694_36676349_36676477_36678845
transcript_137590.known	chr9	-	2104	11	FSM	ENSMUSG00000062762.18	ENSMUST00000239021.2	2104	11	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_10	155.462664328127	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708364	36690454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708299
transcript_137591.known	chr9	-	2220	11	FSM	ENSMUSG00000062762.18	ENSMUST00000238932.2	2220	11	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_2	34.4551882885582	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708689	36690454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708508
transcript_137592.nnic	chr9	-	2176	11	NNC	ENSMUSG00000062762.18	novel	2220	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_10	160.762060200782	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708689	36690454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708552
transcript_137610.known	chr9	+	1794	10	FSM	ENSMUSG00000032118.17	ENSMUST00000034630.15	1794	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	5.61743318211757	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCATGGTTTTTGGAGA	NA	False	NA	18	True	AATAAA	-18	NA	36743979	36790220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_36744208_36754957_36755314_36761642_36761743_36772107_36772195_36774792_36774962_36778991_36779264_36780143_36780225_36781776_36781853_36787592_36787659_36789861
transcript_137613.known	chr9	-	3632	13	FSM	ENSMUSG00000035934.17	ENSMUST00000039674.13	3632	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_11	4.65698400254929	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATGCACAGTTCTCTC	NA	False	NA	-5	True	AGTAAA	-19	NA	37058703	36802277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36898463_36898569_36994502_36994573_37058536
transcript_137614.known	chr9	-	3431	12	FSM	ENSMUSG00000035934.17	ENSMUST00000080754.12	3431	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	6.78232998312527	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTGATGCACAGTTCT	NA	False	NA	-8	True	AGTAAA	-16	NA	37058610	36802280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36994502_36994573_37058536
transcript_137616.known	chr9	-	3393	11	FSM	ENSMUSG00000035934.17	ENSMUST00000177218.8	3393	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	7.1133676975115	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATGCACAGTTCTCTC	NA	False	NA	-5	True	AGTAAA	-19	NA	36994605	36802277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36994502
transcript_137617.known	chr9	+	2619	4	FSM	ENSMUSG00000032121.10	ENSMUST00000034632.10	2619	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	7.40870359029762	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGAGGGAGGGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	37119518	37135996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_37119702_37129561_37129673_37130497_37130601_37133774
transcript_137620.known	chr9	-	2945	19	FSM	ENSMUSG00000032122.16	ENSMUST00000161114.2	2945	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	22.9957725583542	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTGCCTGGTTCTCACT	NA	False	NA	-3	True	AATAAA	-10	NA	37166710	37141611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_37142953_37144348_37144406_37144605_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380_37146467_37146776_37146840_37148174_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
transcript_137623.known	chr9	-	5943	18	FSM	ENSMUSG00000032122.16	ENSMUST00000115068.10	5943	18	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	7.12469267230106	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTATGACATATGCTTATTC	NA	False	NA	NA	False	AATAAA	-17	NA	37167034	37138880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_37142953_37144605_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380_37146467_37146776_37146840_37148174_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
transcript_137633.known	chr9	+	444	1	FSM	ENSMUSG00000090136.5	ENSMUST00000160052.2	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	459	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAATGGGGCAAGCTCA	NA	False	NA	NA	False	AATAAA	-43	NA	37164217	37164661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_37164200_37164700
transcript_137634.known	chr9	-	3331	16	FSM	ENSMUSG00000034303.9	ENSMUST00000213633.2	3331	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	5.33166640616859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGTTGCTATTCCTCA	NA	False	NA	NA	False	AATAAA	-19	NA	37259728	37187130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_37187862_37188653_37188778_37190262_37190412_37190869_37191047_37214175_37214280_37215605_37215702_37222613_37222725_37224672_37224796_37225582_37225649_37226454_37227184_37227703_37227824_37231692_37231807_37253731_37253918_37255179_37255330_37259033_37259220_37259563
transcript_137635.known	chr9	-	3525	16	FSM	ENSMUSG00000034303.9	ENSMUST00000239439.2	3525	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	5.33166640616859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGTTGCTATTCCTCA	NA	False	NA	NA	False	AATAAA	-19	NA	37259688	37187130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_37187862_37188653_37188778_37190262_37190412_37190869_37191047_37214175_37214280_37215605_37215702_37222613_37222725_37224672_37224796_37225582_37225649_37226454_37227184_37227703_37227824_37231692_37231807_37253731_37253918_37255179_37255330_37259033_37259220_37259329
transcript_137639.nic	chr9	-	2368	12	ISM	ENSMUSG00000034303.9	ENSMUST00000239439.2	3525	16	-39	27060	1	10087	5prime_fragment	FALSE	canonical	2	5	junction_5	5.1425947722658	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAGGATTGAAAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	37259727	37214190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_37214280_37215605_37215702_37222613_37222725_37224672_37224796_37225582_37225649_37226454_37227184_37227703_37227824_37231692_37231807_37253731_37253918_37255179_37255330_37259033_37259220_37259329
transcript_137649.known	chr9	+	3347	7	FSM	ENSMUSG00000046240.9	ENSMUST00000051839.9	3347	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATTTCCACATAAGCAA	NA	False	NA	NA	False	NA	NA	NA	37278646	37297871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_37279058_37291758_37292101_37292837_37293120_37293651_37293752_37294676_37294751_37295149_37295221_37295804
transcript_137651.known	chr9	+	3689	18	FSM	ENSMUSG00000032125.22	ENSMUST00000239486.2	3689	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.08465228909328	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTGTGACATCATTCCT	NA	False	NA	NA	False	TATAAA	-13	NA	37313341	37325318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_37313448_37313850_37314184_37314447_37314606_37314738_37314860_37315369_37315498_37315588_37315818_37316066_37316180_37316868_37317038_37317193_37317380_37317484_37317528_37319233_37319371_37319468_37319733_37321677_37321786_37321995_37322135_37322275_37322519_37322640_37323000_37324324_37324532_37324672
transcript_137657.nic	chr9	+	2265	5	NIC	ENSMUSG00000042138.10	novel	2591	4	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	97.7010747126151	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATTAAA	357	False	NA	NA	False	TTTAAA	-7	NA	37400576	37435446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_37401130_37424909_37425000_37428668_37428769_37430022_37430084_37433985
transcript_137659.known	chr9	+	2289	4	FSM	ENSMUSG00000042138.10	ENSMUST00000239463.2	2289	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	92.182186758373	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	397	False	NA	NA	False	TTTAAA	-5	NA	37400616	37435444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_37401130_37428512_37428769_37430022_37430084_37433985
transcript_137660.known	chr9	+	423	4	FSM	ENSMUSG00000042138.10	ENSMUST00000214298.2	423	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	69.0909223817106	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTTTGGAGTCGGTGCA	676	False	NA	NA	False	NA	NA	NA	37400895	37434013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_37401130_37428668_37428769_37430022_37430084_37433985
transcript_137662.known	chr9	+	1166	7	FSM	ENSMUSG00000001943.9	ENSMUST00000002008.7	1166	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.13138237134266	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTCTCCTTTCTAGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	37450550	37455497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_37450735_37451164_37451323_37451589_37451798_37452622_37452782_37453650_37453771_37453884_37454030_37455305
transcript_137666.known	chr9	-	1453	4	FSM	ENSMUSG00000053310.12	ENSMUST00000065668.12	1453	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	6.12825877028341	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGGGTGCAGGGTGGGG	NA	False	NA	0	True	AATAAA	-19	NA	37464200	37455787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_37456628_37456995_37457014_37457243_37457471_37463832
transcript_137669.known	chr9	+	4947	10	FSM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_7	7.87400787401181	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37524965	37560951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539135_37542644_37542901_37544253_37544364_37544916_37545051_37553935_37554094_37556047_37556244_37557592
transcript_137677.known	chr9	-	1984	9	FSM	ENSMUSG00000011114.19	ENSMUST00000117654.3	1984	9	0	0	0	0	multi-exon	FALSE	canonical	3	1493	junction_6	94.6836839165017	1962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGATTCTGACCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	37568608	37560058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
transcript_137679.known	chr9	-	1761	8	FSM	ENSMUSG00000011114.19	ENSMUST00000142736.9	1761	8	0	0	0	0	multi-exon	FALSE	canonical	3	1493	junction_5	98.6130346974724	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTGTTTCTTCTTGT	NA	False	NA	-20	True	AATAAA	-18	NA	37568533	37560477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564466_37565511_37565733_37566317_37566389_37568293
transcript_137687.known	chr9	-	696	5	FSM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_2	1.92028643696715	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGGTTGTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37525018	37514585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_37514783_37517088_37517167_37518912_37518984_37523131_37523315_37524851
transcript_137689.known	chr9	-	823	3	FSM	ENSMUSG00000011114.19	ENSMUST00000126062.2	823	3	0	0	0	0	multi-exon	FALSE	canonical	3	1703	junction_2	71.5	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGCATATTAAACTGGTT	NA	False	NA	NA	False	NA	NA	NA	37568464	37565151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_37565733_37566317_37566389_37568293
transcript_137692.known	chr9	+	4157	20	FSM	ENSMUSG00000023186.15	ENSMUST00000001544.12	4157	20	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_6	2.97449918967259	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCAAACTTTGTTTTAGT	NA	False	NA	NA	False	NA	NA	NA	38629563	38654633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_38629684_38630553_38630630_38633668_38633727_38633841_38634045_38634322_38634546_38634662_38634839_38635141_38635257_38638238_38638409_38639049_38639139_38639289_38639435_38639917_38639998_38645160_38645276_38645992_38646158_38646854_38646956_38647247_38647502_38649038_38649105_38649198_38649298_38649781_38649913_38652393_38652521_38652989
transcript_137698.known	chr9	+	3502	19	FSM	ENSMUSG00000023186.15	ENSMUST00000118144.8	3502	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.43645114538998	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATTGGAGATTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	38629567	38654058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_38629684_38633668_38633727_38633841_38634045_38634322_38634546_38634662_38634839_38635141_38635257_38638238_38638409_38639049_38639139_38639289_38639435_38639917_38639998_38645160_38645276_38645992_38646158_38646854_38646956_38647247_38647502_38649038_38649105_38649198_38649298_38649781_38649913_38652393_38652521_38652989
transcript_1377.known	chr1	-	2031	5	FSM	ENSMUSG00000026047.14	ENSMUST00000149665.2	2031	5	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	26.3284541893367	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAATAAGAAATTAGT	NA	False	NA	NA	False	AAAAAG	-3	NA	44157925	44151242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
transcript_137701.known	chr9	-	4224	20	FSM	ENSMUSG00000038112.16	ENSMUST00000119722.8	4224	20	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	1.49421784911351	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAGTTTCACATCATGAA	NA	False	NA	NA	False	NA	NA	NA	39514983	39498805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_39500422_39500938_39501066_39501896_39502028_39502499_39502605_39502698_39502798_39504091_39504340_39504624_39504726_39504966_39505132_39505836_39505952_39507890_39507971_39508350_39508496_39508903_39508993_39509209_39509380_39510573_39510689_39510940_39511117_39511234_39511458_39511763_39511967_39512075_39512134_39514510_39514608_39514822
transcript_137713.known	chr9	+	3873	7	FSM	ENSMUSG00000025602.14	ENSMUST00000168691.2	3873	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.25830573921179	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTACCCCAATTTACATTT	NA	False	NA	NA	False	AATAAA	-16	NA	40103611	40124900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_40103734_40118494_40118987_40119600_40119812_40120173_40120263_40121062_40121193_40121736_40121857_40122191
transcript_137714.known	chr9	+	3461	7	FSM	ENSMUSG00000025602.14	ENSMUST00000026693.14	3461	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTATGCCTGGTTTCTTC	NA	False	NA	NA	False	ATTAAA	-20	NA	40103612	40124485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_40103734_40118494_40118991_40119600_40119812_40120173_40120263_40121062_40121193_40121736_40121857_40122191
transcript_137716.known	chr9	+	4150	7	FSM	ENSMUSG00000049281.17	ENSMUST00000049941.12	4150	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.06718737290547	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCTGGGTTTGCTATG	NA	False	NA	NA	False	AATAAA	-40	NA	40180512	40202914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_40180899_40181263_40181344_40188363_40188528_40190670_40190897_40193719_40193859_40199669_40199750_40199839
transcript_137720.known	chr9	+	4154	7	FSM	ENSMUSG00000032024.11	ENSMUST00000034522.8	4154	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.57043640026736	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTTGTAAAATAGTAAGAT	NA	False	NA	NA	False	AATAAA	-19	NA	40597307	40696615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_40597656_40672196_40672355_40682400_40682603_40683656_40683825_40685658_40685782_40692408_40692551_40693602
transcript_137733.known	chr9	+	2394	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	16168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2167	False	NA	10	True	AATAAA	-20	NA	40712279	40716496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
transcript_137736.nic	chr9	+	2308	9	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	40	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	7902.13270955221	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2525	False	NA	10	True	AATAAA	-20	NA	40712637	40716496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_40712917_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
transcript_137740.nic	chr9	+	2204	8	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	3928	junction_3	6242.18814002832	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2456	False	NA	10	True	AATAAA	-20	NA	40712568	40716496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715992_40716227
transcript_137742.nic	chr9	+	2315	8	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	3928	junction_3	6439.02414649795	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2456	False	NA	10	True	AATAAA	-20	NA	40712568	40716496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40715239_40715460_40715660_40715758_40715992_40716227
transcript_137744.nic	chr9	+	2187	8	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	3928	junction_3	5605.38982605499	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2456	False	NA	10	True	AATAAA	-20	NA	40712568	40716496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
transcript_137746.nic	chr9	+	2427	8	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-35	0	intron_retention	FALSE	canonical	3	3928	junction_2	6450.55656513452	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2424	False	NA	10	True	AATAAA	-20	NA	40712536	40716496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_40712645_40713213_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
transcript_137769.known	chr9	-	6354	14	FSM	ENSMUSG00000032020.16	ENSMUST00000044155.15	6354	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	2.76067052998867	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAAGTCCTGAGTGTGG	6362	False	NA	NA	False	AATAAA	-38	NA	41069358	40922393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_40926333_40927893_40928004_40929312_40929420_40934716_40934862_40937545_40937639_40939312_40939436_40940934_40941056_40942776_40942910_40948732_40948942_40954770_40954941_40958176_40958376_40961735_40961923_40962612_40962667_41068594
transcript_137771.known	chr9	-	10715	48	FSM	ENSMUSG00000049313.9	ENSMUST00000060989.9	10715	48	0	0	0	0	multi-exon	TRUE	canonical	3	333	junction_27	73.2507244219374	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAGAGCAGCAGCCGAT	NA	False	NA	-11	True	AATAAA	-16	NA	42035593	41876015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_41879967_41880939_41881153_41885232_41885426_41887653_41887761_41888731_41888907_41890625_41890791_41891921_41892042_41894201_41894387_41895731_41895832_41896853_41896937_41898761_41898835_41900000_41900106_41900649_41900763_41902607_41902778_41902914_41903042_41903599_41903732_41907466_41907617_41911539_41911696_41912766_41912902_41913849_41913982_41915281_41915414_41917101_41917210_41919474_41919601_41925750_41925871_41929411_41929535_41933631_41933746_41935591_41935766_41942174_41942314_41942964_41943212_41944860_41944953_41946738_41946871_41948344_41948518_41952288_41952375_41952859_41952989_41955202_41955390_41957778_41957958_41968566_41968656_41975010_41975085_41975282_41975401_41979092_41979286_41982367_41982538_41983540_41983643_41993083_41993265_42001240_42001309_42003604_42003767_42010440_42010567_42017723_42017841_42035124
transcript_137784.known	chr9	-	1677	6	FSM	ENSMUSG00000032018.15	ENSMUST00000169609.2	1677	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	75.9910521048367	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCTCTTCCATAATTC	NA	False	NA	-4	True	AATAAA	-29	NA	42175496	42166028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175417
transcript_137785.known	chr9	-	4787	6	FSM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	23.9198662203617	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCATTGTGTGGACCTGT	NA	False	NA	-1	True	NA	NA	NA	42175552	42162890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175501
transcript_137788.known	chr9	-	703	5	FSM	ENSMUSG00000032018.15	ENSMUST00000217513.2	703	5	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_4	78.337411241373	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGATCTTAAGGCCATT	NA	False	NA	NA	False	NA	NA	NA	42175551	42166892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42175501
transcript_137795.known	chr9	-	5000	8	FSM	ENSMUSG00000037287.16	ENSMUST00000066148.12	5000	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_7	5.55124549363584	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTGTTCTGAGTGTT	NA	False	NA	-1	True	ATTAAA	-17	NA	42383554	42323611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_42327446_42348410_42348528_42350392_42350520_42354114_42354372_42355702_42355885_42361219_42361360_42362908_42363059_42383361
transcript_137796.known	chr9	-	3893	8	FSM	ENSMUSG00000037287.16	ENSMUST00000066179.14	3893	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	17.1607049947946	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTATAACCAAAATTATTT	NA	False	NA	NA	False	AATAAA	-18	NA	42372757	42324713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_42327446_42348410_42348528_42350392_42350520_42354114_42354372_42355702_42355885_42361219_42361360_42362908_42363059_42372569
transcript_137804.known	chr9	-	2327	2	FSM	ENSMUSG00000037287.16	ENSMUST00000142775.2	2327	2	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAATAGAAAAAAAAAAAGA	4354	False	NA	NA	False	NA	NA	NA	42339534	42325285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_42327446_42339367
transcript_137807.known	chr9	-	5887	21	FSM	ENSMUSG00000032017.15	ENSMUST00000114865.8	5887	21	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_7	2.95761728423405	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGGGTGCGAGGTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	42855789	42429430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_42432482_42435775_42435895_42448609_42448739_42453117_42453344_42455053_42455220_42458862_42459037_42461702_42461813_42477594_42477709_42502645_42502850_42509149_42509258_42533354_42533460_42534221_42534375_42540272_42540435_42566782_42566837_42571013_42571193_42582433_42582600_42586508_42586607_42599228_42599394_42719788_42719921_42730165_42730271_42855622
transcript_137811.nic	chr9	-	5903	40	NIC	ENSMUSG00000059495.15	novel	10059	42	NA	NA	-228	-5016	combination_of_known_junctions	FALSE	canonical	2	9	junction_32	5.59632639907851	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGATGTATTTATTTGACT	NA	False	NA	NA	False	TATAAA	-29	NA	43017510	42880154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_42880489_42881008_42881079_42882288_42882603_42883290_42883762_42885852_42886087_42886328_42886409_42886523_42886611_42887328_42887417_42888931_42889100_42889501_42889578_42890691_42890770_42893243_42893345_42895669_42895785_42897757_42897884_42900255_42900342_42901270_42901418_42903169_42903325_42903831_42903868_42904284_42904418_42908869_42909083_42910361_42910468_42911243_42911359_42911652_42911686_42912264_42912403_42912741_42912848_42913153_42913197_42916839_42916939_42917131_42917243_42919311_42919405_42921474_42921550_42927198_42927340_42929347_42929468_42929630_42929709_42931900_42932080_42934110_42934169_42937475_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
transcript_137816.nic	chr9	-	4004	31	NIC	ENSMUSG00000059495.15	novel	10059	42	NA	NA	-228	-14416	combination_of_known_junctions	FALSE	canonical	2	9	junction_23	5.69414904382853	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGATTCATGAAGGGCCGT	NA	False	NA	NA	False	AAAAAG	-4	NA	43017510	42889554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_42889578_42890691_42890770_42893243_42893345_42895669_42895785_42897757_42897884_42900255_42900342_42901270_42901418_42903169_42903325_42903831_42903868_42904284_42904418_42908869_42909083_42910361_42910468_42911243_42911359_42911652_42911686_42912264_42912403_42912741_42912848_42913153_42913197_42916839_42916939_42917131_42917243_42919311_42919405_42921474_42921550_42927198_42927340_42929347_42929468_42929630_42929709_42931900_42932080_42934110_42934169_42937475_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
transcript_137826.nic	chr9	-	2544	5	NIC	ENSMUSG00000059495.15	novel	10752	41	NA	NA	-228	15	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	5.11737237261468	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATTAAATGGCTTGGTG	NA	False	NA	NA	False	AAGAAA	-10	NA	43017510	42936227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
transcript_137828.known	chr9	-	3503	3	FSM	ENSMUSG00000048503.8	ENSMUST00000061833.6	3503	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	3	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCCTTCGTATCTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	43027865	43019944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_43023154_43024755_43024956_43027771
transcript_137829.known	chr9	-	689	3	FSM	ENSMUSG00000048503.8	ENSMUST00000216126.2	689	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGACGGAATGAAGAGCGG	NA	False	NA	NA	False	AAGAAA	-29	NA	43027831	43022670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_43023154_43024809_43024956_43027771
transcript_137835.nnic	chr9	-	2472	13	NNC	ENSMUSG00000032015.17	novel	2522	13	NA	NA	6356	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_12	24.3903441732356	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGATGTTCAGAGGAGTG	5977	False	NA	NA	False	CATAAA	-17	NA	43110696	43035233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43110644
transcript_137836.nnic	chr9	-	2817	13	NNC	ENSMUSG00000032015.17	novel	2522	13	NA	NA	5470	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	21.2895057611856	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGATGTTCAGAGGAGTG	5091	False	NA	NA	False	CATAAA	-17	NA	43111582	43035233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43111185
transcript_137837.known	chr9	-	2522	13	FSM	ENSMUSG00000032015.17	ENSMUST00000176636.5	2522	13	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_12	13.5359603361646	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGATGTTCAGAGGAGTG	NA	False	NA	NA	False	CATAAA	-17	NA	43117052	43035233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43116950
transcript_13784.known	chr10	+	2235	1	FSM	ENSMUSG00000052291.9	ENSMUST00000218139.2	2235	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCGCACCGAAAACTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	116417185	116419420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_116417200_116419400
transcript_137842.known	chr9	-	2526	4	FSM	ENSMUSG00000032014.7	ENSMUST00000034512.7	2526	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	2.62466929133727	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAGGCAAAAGCCAT	NA	False	NA	NA	False	NA	NA	NA	43151208	43132531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_43134137_43135193_43135375_43136172_43136308_43150603
transcript_137843.known	chr9	+	5653	6	FSM	ENSMUSG00000032012.10	ENSMUST00000034510.9	5653	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	3.03315017762062	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAAGTGCCTCTTGTCAC	NA	False	NA	NA	False	AATAAA	-14	NA	43655280	43718758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_43656020_43702333_43702685_43703173_43703477_43703744_43703863_43705386_43705539_43714768
transcript_137846.known	chr9	+	1735	4	FSM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	3.74165738677394	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTGTCTGTCTCTTCT	NA	False	NA	34	True	AATAAA	-20	NA	43954680	43959876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_43954774_43957253_43957316_43957910_43958250_43958635
transcript_137847.known	chr9	+	3867	13	FSM	ENSMUSG00000032010.16	ENSMUST00000034508.14	3867	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	11.1654228162962	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGACGGTCTTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	43978317	44006924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_43978518_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_137849.nic	chr9	+	2127	13	NIC	ENSMUSG00000032010.16	novel	908	4	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	16.8349834174753	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	43983440	44005230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_43983595_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_13785.known	chr10	+	676	2	FSM	ENSMUSG00000052291.9	ENSMUST00000219273.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTCGCACCGAAAACTTC	NA	False	NA	NA	False	AATAAA	-34	NA	116417480	116419419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_116417628_116418890
transcript_137851.known	chr9	+	2057	12	FSM	ENSMUSG00000032010.16	ENSMUST00000065461.9	2057	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	11.7473401244707	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTTTGGGTTCTCAAAA	2248	False	NA	NA	False	NA	NA	NA	43996235	44005774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_43996633_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_137856.known	chr9	-	2724	1	FSM	ENSMUSG00000053128.16	ENSMUST00000056328.6	2724	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1140	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCCTTGGGAGTGGT	9262	False	NA	NA	False	AATAAA	-20	NA	44024801	44022077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44022100_44024800
transcript_137857.known	chr9	+	2370	14	FSM	ENSMUSG00000032010.16	ENSMUST00000177054.8	2370	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	21.0184478001824	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43978374	44005226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_43978518_43979334_43979593_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_137858.known	chr9	+	1486	12	FSM	ENSMUSG00000032010.16	ENSMUST00000176416.8	1486	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.2626765016321	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTCAGAAAAAAAAAAAAA	2259	False	NA	NA	False	NA	NA	NA	43996246	44005223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_43996633_44000437_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_137859.known	chr9	+	2989	16	FSM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	5.20085463062456	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTGTGTTCCATTCAT	78	False	NA	19	True	AATAAA	-21	NA	44045858	44054024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44046054_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
transcript_13786.known	chr10	-	1844	11	FSM	ENSMUSG00000064181.7	ENSMUST00000219109.2	1844	11	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_7	35.031985384788	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCGTGTGTCTTTCTTA	NA	False	NA	-7	True	AATAAA	-10	NA	116786336	116742681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116764093_116764190_116773301_116773561_116775105_116775387_116786164
transcript_137860.known	chr9	+	2772	15	FSM	ENSMUSG00000032135.16	ENSMUST00000098852.3	2772	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	9.18628080901302	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGATGCTGTGTTCCATT	4	True	NA	16	True	AATAAA	-18	NA	44045954	44054021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44046054_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44053080
transcript_137863.known	chr9	-	11372	16	FSM	ENSMUSG00000034342.10	ENSMUST00000206720.2	11372	16	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_5	3.59382185918495	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTCTGGTTCACTTG	2914	False	NA	0	True	AATAAA	-21	NA	44145346	44054272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44063035_44064085_44064266_44065057_44065156_44065486_44065628_44067912_44068008_44069810_44070189_44070273_44070406_44074635_44074840_44075422_44075555_44076098_44076187_44077749_44077888_44078506_44078629_44080316_44080474_44084549_44084697_44112256_44112505_44144996
transcript_137867.known	chr9	-	2193	11	FSM	ENSMUSG00000032105.6	ENSMUST00000034618.6	2193	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.66332495807108	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGATTTGTGTTTTATT	657	False	NA	NA	False	NA	NA	NA	44162768	44158603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44159314_44159527_44159729_44159852_44160060_44160143_44160341_44160531_44160737_44160907_44161045_44161139_44161330_44161547_44161760_44162079_44162154_44162294_44162323_44162736
transcript_137868.known	chr9	-	3621	10	FSM	ENSMUSG00000032109.16	ENSMUST00000169651.3	3621	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	2.61524495465329	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTGTGGTCTCCACTTC	5974	False	NA	NA	False	ATTAAA	-17	NA	44179425	44164014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44164837_44165288_44165541_44166727_44166815_44167628_44168225_44173528_44174351_44174925_44175546_44175999_44176089_44176460_44176531_44177040_44177155_44179276
transcript_137869.known	chr9	-	3999	15	FSM	ENSMUSG00000032131.17	ENSMUST00000161354.9	3999	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	1.34202101628971	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGGGTGTGAATGTCGAT	NA	False	NA	NA	False	AATAAA	-19	NA	44199912	44184484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44186155_44186312_44186432_44186546_44186706_44188754_44188856_44188954_44189124_44189328_44189428_44190268_44190412_44190599_44190715_44190831_44190956_44192378_44192525_44192693_44192745_44192855_44192989_44193100_44193219_44198512_44198763_44199310
transcript_137877.known	chr9	-	5333	10	FSM	ENSMUSG00000032119.6	ENSMUST00000216508.2	5333	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_7	6.83852557930183	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGAGTGTGGTGGTGCC	NA	False	NA	-2	True	NA	NA	NA	44216968	44203736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216912
transcript_137879.nnic	chr9	-	2581	10	NNC	ENSMUSG00000032119.6	novel	5333	10	NA	NA	-3	431	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_9	14.5296631451356	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTATTTCTTAAGTTTG	NA	False	NA	-6	True	AATAAA	-17	NA	44216971	44206972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216431
transcript_137883.known	chr9	-	1439	10	FSM	ENSMUSG00000032119.6	ENSMUST00000034629.6	1439	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	17.1399468429099	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAGGATCAGATCCGG	NA	False	NA	NA	False	NA	NA	NA	44216943	44207790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44214070_44216912
transcript_137888.nnic	chr9	-	3326	15	NNC	ENSMUSG00000032120.12	novel	4337	14	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	12.5055089901227	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGAGTGGCTGGTTATCCT	5291	False	NA	NA	False	TATAAA	-1	NA	44231606	44221507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_44222565_44224802_44225089_44225174_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004_44228116_44228296_44228417_44228879_44228976_44230831_44231229_44231289
transcript_137891.known	chr9	-	4337	14	FSM	ENSMUSG00000032120.12	ENSMUST00000065080.10	4337	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	6.29548537403388	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTGATGTATATCTTAC	5315	False	NA	NA	False	NA	NA	NA	44231582	44220533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44222565_44224802_44225089_44225174_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004_44228116_44228296_44228417_44228879_44228976_44230831
transcript_137899.known	chr9	-	2808	13	FSM	ENSMUSG00000032120.12	ENSMUST00000214602.2	2808	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.46947962873883	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATTTATTACATTTAT	5348	False	NA	NA	False	NA	NA	NA	44231549	44224267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44225089_44225174_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004_44228116_44228296_44228417_44228879_44228976_44230831
transcript_1379.known	chr1	-	1122	6	FSM	ENSMUSG00000026049.12	ENSMUST00000156392.8	1122	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	166.814148081031	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141598	44125775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139082_44141487
transcript_13790.known	chr10	-	2690	10	FSM	ENSMUSG00000064181.7	ENSMUST00000020375.7	2690	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	97.8627156332334	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGAGGTTGGGTTATTTT	NA	False	NA	-5	True	ATTAAA	-16	NA	116786285	116741688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116773301_116773561_116775105_116775387_116786164
transcript_137905.known	chr9	+	2205	9	FSM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	28.7920887571569	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCACAGTGCTCCATTTTC	3774	False	NA	NA	False	AATAAA	-32	NA	44238141	44245197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
transcript_137906.known	chr9	+	2050	8	FSM	ENSMUSG00000032123.6	ENSMUST00000215050.2	2050	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	96.7247303919104	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGATCACAGTGCTCC	3802	False	NA	NA	False	AATAAA	-26	NA	44238169	44245191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44238503_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
transcript_137908.known	chr9	+	1384	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11310	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTTAATGTTGAATGCT	5253	False	NA	34	True	ATTAAA	-30	NA	44245990	44247374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44246000_44247400
transcript_137910.known	chr9	-	1605	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	1215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTTTCTGTTGTAAAAC	1408	False	NA	9	True	AATAAA	-33	NA	44255525	44247635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
transcript_137915.known	chr9	-	3536	16	FSM	ENSMUSG00000032127.10	ENSMUST00000034644.10	3536	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	77.9168787875901	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTTCTGGATAGCCTC	6378	False	NA	NA	False	AATATA	-16	NA	44272967	44259045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272741
transcript_137916.nic	chr9	-	3136	16	NIC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	-12	-166	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	74.7007065264818	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTATGGAGACTTTCCA	6366	False	NA	-27	True	AATAAA	-27	NA	44272979	44259390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272741
transcript_137927.known	chr9	-	3812	14	FSM	ENSMUSG00000032127.10	ENSMUST00000214510.2	3812	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	62.6281408287731	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCGCCCTCAGGTGAC	6404	False	NA	-31	True	NA	NA	NA	44272941	44259224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265589_44265705_44265853_44266260_44266448_44266995_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272741
transcript_137930.known	chr9	-	818	1	FSM	ENSMUSG00000111088.2	ENSMUST00000217460.2	818	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGAGTATTCATGTG	NA	False	NA	NA	False	NA	NA	NA	44290747	44289929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44289900_44290700
transcript_137936.known	chr9	+	4432	26	FSM	ENSMUSG00000032115.15	ENSMUST00000066601.13	4432	26	0	0	0	0	multi-exon	TRUE	canonical	3	476	junction_1	89.8853847964173	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGCTTCTTCCCTCC	NA	False	NA	7	True	AATAAA	-23	NA	44290786	44303666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
transcript_13794.known	chr10	-	443	1	FSM	ENSMUSG00000111966.2	ENSMUST00000219792.2	443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCAATAAAGACTGGTT	NA	False	NA	NA	False	NA	NA	NA	116809113	116808670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116808700_116809100
transcript_137941.known	chr9	+	4489	26	FSM	ENSMUSG00000032115.15	ENSMUST00000161318.8	4489	26	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	153.155429547894	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTATGTGTTTGCTTCTT	NA	False	NA	1	True	AATAAA	-17	NA	44290869	44303660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44291039_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
transcript_137944.known	chr9	+	3374	26	FSM	ENSMUSG00000032115.15	ENSMUST00000160902.8	3374	26	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	146.389890361322	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATACATCAGGGTTG	NA	False	NA	NA	False	NA	NA	NA	44290919	44302399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44291235_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
transcript_13797.nic	chr10	-	2080	16	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	239	junction_15	561.749291647677	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899294	116886905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899064
transcript_13798.known	chr10	-	1959	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	0	0	0	0	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	2148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899719	116886905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
transcript_137985.known	chr9	+	2128	9	FSM	ENSMUSG00000032114.10	ENSMUST00000215420.2	2128	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	8.7740740252177	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAACAGTCAGTGGCTCA	NA	False	NA	NA	False	AATAAA	-13	NA	44308148	44314257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44308289_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
transcript_137987.known	chr9	+	2344	9	FSM	ENSMUSG00000032114.10	ENSMUST00000213388.2	2344	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	9.53939201416946	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGGCTCATCCTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	44308395	44314265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44308744_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
transcript_137988.nic	chr9	+	2377	9	NIC	ENSMUSG00000032114.10	novel	2344	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	8.7740740252177	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCAGTGGCTCATCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	44308387	44314263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_44308771_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
transcript_137993.known	chr9	-	1725	11	FSM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	11.2853887837327	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGATTGAACCTGTAAA	8410	False	NA	0	True	AATAAA	-21	NA	44329866	44321455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
transcript_137994.known	chr9	-	1080	11	FSM	ENSMUSG00000043923.9	ENSMUST00000214494.2	1080	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	17.9677488851553	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCTGAAGGTTCCCAGG	8950	False	NA	NA	False	NA	NA	NA	44329326	44321609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324341_44324433_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
transcript_1380.nic	chr1	+	3323	11	NIC	ENSMUSG00000041684.12	novel	3313	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	13.7317151150175	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAATCCTATGAATTTT	NA	False	NA	14	True	AATAAA	-14	NA	44158116	44183670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_44158336_44159333_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
transcript_138006.nnic	chr9	+	761	6	NNC	ENSMUSG00000009927.10	novel	1280	5	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5001.66505875793	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGGGTGCATCTGTTTC	NA	False	NA	92	True	AATAAA	-17	NA	44318410	44321489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_44318548_44318856_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
transcript_138007.known	chr9	-	888	6	FSM	ENSMUSG00000043923.9	ENSMUST00000217351.2	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	9.83056458195561	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCAGAGGAGGGGCACT	8942	False	NA	NA	False	NA	NA	NA	44329334	44324200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
transcript_138009.known	chr9	-	1220	5	FSM	ENSMUSG00000032112.11	ENSMUST00000034623.8	1220	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	135.857462069626	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTCTCCTAACTGAT	1473	False	NA	-8	True	AATAAA	-17	NA	44318897	44315055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
transcript_138013.known	chr9	-	2675	5	FSM	ENSMUSG00000043923.9	ENSMUST00000213813.2	2675	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	8.04285397107271	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGGAATACA	8940	False	NA	NA	False	NA	NA	NA	44329336	44322656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
transcript_138014.known	chr9	-	935	4	FSM	ENSMUSG00000032112.11	ENSMUST00000213747.2	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	851	junction_3	13.0213499897497	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCATTCAGTGAATATAA	1967	False	NA	53	True	NA	NA	NA	44318403	44314994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100
transcript_138017.known	chr9	-	1185	4	FSM	ENSMUSG00000032112.11	ENSMUST00000217163.2	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	146.917210246678	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTTCTCTCCTAACTG	1741	False	NA	-10	True	AATAAA	-15	NA	44318629	44315057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44315758_44316539_44316644_44318100_44318276_44318423
transcript_138020.known	chr9	-	401	3	FSM	ENSMUSG00000032112.11	ENSMUST00000217084.2	401	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	420.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGTGGCAGAGAAGGCT	2031	False	NA	NA	False	NA	NA	NA	44318339	44315360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44315396_44315630_44315758_44318100
transcript_138022.known	chr9	-	1339	1	FSM	ENSMUSG00000032112.11	ENSMUST00000215731.2	1339	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1711	False	NA	NA	False	NA	NA	NA	44318659	44317320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44317300_44318700
transcript_138023.known	chr9	+	577	4	FSM	ENSMUSG00000009927.10	ENSMUST00000216867.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	3	11233	junction_1	829.827692958002	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGGGTGCATCTGT	NA	False	NA	89	True	AATAAA	-14	NA	44318993	44321486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250
transcript_138024.known	chr9	+	703	4	FSM	ENSMUSG00000009927.10	ENSMUST00000215610.2	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	5317	junction_3	3495.27194936245	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGTGCATCTGTTTCCT	NA	False	NA	94	True	AATAAA	-19	NA	44319009	44321491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44319381_44319982_44320167_44321250_44321350_44321442
transcript_138025.known	chr9	-	878	10	FSM	ENSMUSG00000043923.9	ENSMUST00000214702.2	878	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	10.0308167140377	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAAAACTGAAGAAA	8949	False	NA	NA	False	ACTAAA	-24	NA	44329327	44321874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
transcript_138028.nic	chr9	-	898	3	ISM	ENSMUSG00000074397.6	ENSMUST00000215980.2	676	4	-242	226	-121	-226	5prime_fragment	FALSE	canonical	3	31	junction_1	2.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGACCTGGACCCTGGG	9093	False	NA	-6	True	AATAAA	-16	NA	44352554	44347077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_44347400_44347500_44347576_44352053
transcript_138029.known	chr9	-	1083	5	FSM	ENSMUSG00000041523.4	ENSMUST00000047740.4	1083	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	1.4790199457749	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCGACCATGTCTATGTG	8953	False	NA	NA	False	AATAAA	-25	NA	44366273	44364011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44364407_44364779_44364851_44365091_44365231_44365358_44365491_44365927
transcript_138030.known	chr9	+	357	1	FSM	ENSMUSG00000094437.3	ENSMUST00000178509.3	357	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGAAATGTCGGCAGCT	NA	False	NA	NA	False	NA	NA	NA	44375539	44375896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44375500_44375900
transcript_138035.known	chr9	+	5760	8	FSM	ENSMUSG00000063382.7	ENSMUST00000220303.2	5760	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	3.98978286964827	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCCCCCTCTTTCAAA	1918	False	NA	39	True	NA	NA	NA	44394121	44421719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44394784_44412041_44412428_44413098_44413219_44416349_44416561_44416712_44416798_44416880_44419168_44419449_44419732_44419992
transcript_138042.nnic	chr9	+	2659	15	NNC	ENSMUSG00000032097.11	novel	6065	14	NA	NA	-283	-3540	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	11.5742941778013	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATACCAAGTAAAATTTTC	NA	False	NA	NA	False	TTTAAA	-9	NA	44515905	44548488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_44516043_44518244_44518335_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
transcript_138044.nnic	chr9	+	2649	15	NNC	ENSMUSG00000032097.11	novel	6029	14	NA	NA	-66	-3540	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	11.2161054028644	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATACCAAGTAAAATTTTC	NA	False	NA	NA	False	TTTAAA	-9	NA	44516122	44548488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_44516250_44518244_44518335_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
transcript_138052.nnic	chr9	+	2601	14	NNC	ENSMUSG00000032097.11	novel	6065	14	NA	NA	-315	-3540	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	8.71236623678017	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATACCAAGTAAAATTTTC	NA	False	NA	NA	False	TTTAAA	-9	NA	44515873	44548488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_44516043_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
transcript_138054.nnic	chr9	+	2534	14	NNC	ENSMUSG00000032097.11	novel	6065	14	NA	NA	-66	-3540	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	7.66070431047592	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATACCAAGTAAAATTTTC	NA	False	NA	NA	False	TTTAAA	-9	NA	44516122	44548488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_44516225_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
transcript_138055.known	chr9	+	6029	14	FSM	ENSMUSG00000032097.11	ENSMUST00000217034.2	6029	14	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7.66070431047592	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTGTATGTATGTTC	NA	False	NA	17	True	AATAAA	-18	NA	44516192	44552028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44516250_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
transcript_138057.known	chr9	+	6065	14	FSM	ENSMUSG00000032097.11	ENSMUST00000170489.2	6065	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	9.15352294193447	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTGTATGTATGTTC	NA	False	NA	17	True	AATAAA	-18	NA	44516188	44552028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44516282_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
transcript_138075.nic	chr9	-	3072	13	NIC	ENSMUSG00000048537.17	novel	4643	18	NA	NA	-98	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_12	9.86963637740632	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGAGTGTGGAAGTCTG	NA	False	NA	-2	True	AATAAA	-16	NA	44619822	44597606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44619579
transcript_138078.known	chr9	-	5244	20	FSM	ENSMUSG00000048537.17	ENSMUST00000134465.8	5244	20	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	12.3759215779289	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGAGTGTGGAAGTCTG	9464	False	NA	-2	True	AATAAA	-16	NA	44639397	44597606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44598996_44599913_44600000_44605325_44605429_44605670_44605788_44607333_44607481_44609048_44609140_44609222_44609518_44610643_44610747_44610852_44610994_44615099_44615190_44615357_44615469_44619181_44619338_44622219_44622358_44622444_44622586_44622937_44623220_44626610_44627963_44629570_44629697_44637306_44637478_44638347_44638472_44639316
transcript_138081.known	chr9	-	4072	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTATCCCTCAAACGG	NA	False	NA	NA	False	NA	NA	NA	44679142	44652860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
transcript_138091.known	chr9	-	2956	5	FSM	ENSMUSG00000032096.17	ENSMUST00000150160.8	2956	5	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_1	87.5539119628586	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAAAAAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	44679095	44666404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
transcript_138098.known	chr9	+	1059	12	FSM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	11.1058022211458	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTCCTGGGACTGTGC	NA	False	NA	NA	False	NA	NA	NA	44684449	44701877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
transcript_138103.known	chr9	-	2448	9	FSM	ENSMUSG00000002032.18	ENSMUST00000002100.8	2448	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	3.68908864084343	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAGTGTTTGTTCATT	8172	False	NA	NA	False	AGTAAA	-15	NA	44710604	44705072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709730_44709960_44710055_44710477
transcript_138114.known	chr9	-	544	3	FSM	ENSMUSG00000038717.10	ENSMUST00000043675.9	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	4613	junction_2	56	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGAGTTGTCTTTGGCTTT	NA	False	NA	24	True	NA	NA	NA	44832040	44824514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44824765_44825948_44826110_44831907
transcript_138120.nic	chr9	-	3929	21	NIC	ENSMUSG00000059890.17	novel	3415	20	NA	NA	-20	398	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	10.7396461766671	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGCCATTTTTTTCTT	5280	False	NA	NA	False	NA	NA	NA	44876918	44836747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_44837274_44840959_44841118_44843639_44843788_44844595_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
transcript_138126.known	chr9	-	3415	20	FSM	ENSMUSG00000059890.17	ENSMUST00000117549.8	3415	20	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_19	14.0720347023741	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGAACTGCACATGCA	5300	False	NA	NA	False	AATAAA	-1	NA	44876898	44837145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44837274_44840959_44841118_44843639_44843788_44844595_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44876782
transcript_138130.nic	chr9	-	3327	18	NIC	ENSMUSG00000059890.17	novel	3486	19	NA	NA	-20	-97	combination_of_known_junctions	FALSE	canonical	3	40	junction_8	10.0238469985589	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTTGTGAAAATATTTTA	5280	False	NA	NA	False	GATAAA	-18	NA	44876918	44844365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
transcript_138135.known	chr9	-	3374	9	FSM	ENSMUSG00000059890.17	ENSMUST00000138559.9	3374	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	11.548132965982	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACAGCACCTGTTAGCT	5322	False	NA	NA	False	AAAACA	-33	NA	44876876	44857352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
transcript_138137.nic	chr9	-	908	4	ISM	ENSMUSG00000059890.17	ENSMUST00000138559.9	3374	9	-42	6603	-20	291	5prime_fragment	FALSE	canonical	3	48	junction_1	11.6714276000077	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAAACTTCTATATCTAA	5280	False	NA	NA	False	AAGAAA	-2	NA	44876918	44863955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_44864471_44871276_44871438_44874634_44874731_44876782
transcript_138141.known	chr9	-	1023	7	FSM	ENSMUSG00000002033.15	ENSMUST00000002101.12	1023	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	2.73353657780945	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTCTATCCAAATAGACA	NA	False	NA	NA	False	ATTAAA	-18	NA	44891729	44880869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44881216_44881988_44882072_44882560_44882605_44884803_44884936_44885460_44885689_44886544_44886569_44891563
transcript_138143.known	chr9	+	1617	5	FSM	ENSMUSG00000032094.9	ENSMUST00000034602.9	1617	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2.48746859276655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGCTTGATTTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	44893083	44898637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44893239_44896267_44896487_44896901_44897034_44897354_44897399_44897570
transcript_138144.known	chr9	+	299	2	FSM	ENSMUSG00000032094.9	ENSMUST00000214800.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGCCTGTGTTTTCCAAA	NA	False	NA	NA	False	AATAAA	-20	NA	44897249	44897720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44897399_44897570
transcript_138145.known	chr9	-	1462	8	FSM	ENSMUSG00000032093.8	ENSMUST00000102832.3	1462	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.13635691430002	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATGTCTCTTTTCTTCT	4751	False	NA	NA	False	AATAAA	-17	NA	44920911	44910037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44910886_44911732_44911780_44912276_44912445_44913435_44913652_44916809_44916825_44918473_44918492_44920645_44920748_44920863
transcript_138146.known	chr9	-	2550	4	FSM	ENSMUSG00000032093.8	ENSMUST00000214081.2	2550	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATGAAAAATCTATAGACC	4737	False	NA	NA	False	NA	NA	NA	44920925	44914456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_44916825_44918473_44918492_44920645_44920748_44920863
transcript_138148.known	chr9	+	3107	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	591	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	15	True	AATAAA	-18	NA	44953722	44965313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
transcript_138157.known	chr9	+	3424	6	FSM	ENSMUSG00000070305.11	ENSMUST00000114664.8	3424	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	3.70944739819828	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCTTTTCGTGTCTAACT	NA	False	NA	27	True	AATAAA	-20	NA	44966483	44988734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_44966617_44973338_44973506_44977636_44977848_44979504_44979671_44981953_44982018_44986051
transcript_138171.known	chr9	+	1788	8	FSM	ENSMUSG00000066705.8	ENSMUST00000085939.8	1788	8	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_2	224.259325108142	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGAGTGGCTTTTC	368	False	NA	18	True	AATAAA	-22	NA	45281482	45307453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45281787_45301285_45301346_45301931_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
transcript_138173.known	chr9	+	1789	8	FSM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_2	116.890320124361	809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	368	False	NA	22	True	AATAAA	-26	NA	45281482	45307457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
transcript_138178.known	chr9	+	632	6	FSM	ENSMUSG00000059412.8	ENSMUST00000041005.6	632	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	6.73498329619309	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45314435	45321576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45314599_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
transcript_138179.known	chr9	+	711	6	FSM	ENSMUSG00000059412.8	ENSMUST00000213158.2	711	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	87.0461946325053	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45317222	45321576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45317465_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
transcript_138180.known	chr9	+	1739	8	FSM	ENSMUSG00000032087.12	ENSMUST00000213919.2	1739	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.01695886884898	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCTTTTGAGTTCCTTTG	9439	False	NA	NA	False	AATAAA	-36	NA	45337940	45584247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45337992_45338747_45338945_45358962_45359281_45361779_45361927_45572430_45572578_45579286_45579566_45581293_45581570_45583923
transcript_138186.nic	chr9	-	3351	12	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	47336	-1300	-3860	0	3prime_fragment	FALSE	canonical	3	64	junction_3	8.12505562600157	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCTATGAGGCAGTCC	NA	False	NA	25	True	ATTAAA	-13	NA	45687689	45678255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162
transcript_138188.known	chr9	-	5541	30	FSM	ENSMUSG00000043987.19	ENSMUST00000117194.8	5541	30	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_18	19.7537756592073	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTCCTGTGAGTGTGCT	NA	False	NA	37	True	ATTAAA	-25	NA	45739989	45678243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45697075_45697220_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
transcript_138194.known	chr9	+	3893	18	FSM	ENSMUSG00000035382.10	ENSMUST00000215189.2	3893	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	14.204390373485	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCACCACTCCCAGTATTC	NA	False	NA	NA	False	AATAAA	-27	NA	45817866	45841024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45818338_45819825_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837215_45837366_45838031_45838127_45838334_45838417_45838872_45838967_45839184_45839303_45839808
transcript_1382.nic	chr1	+	3343	11	NIC	ENSMUSG00000041684.12	novel	3313	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	12.9479728143057	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAATCCTATGAATTTT	NA	False	NA	14	True	AATAAA	-14	NA	44158116	44183670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_44158356_44159333_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
transcript_138201.known	chr9	+	3876	17	FSM	ENSMUSG00000035382.10	ENSMUST00000039059.8	3876	17	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	6.25	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCCAAACAAGTCCAC	NA	False	NA	NA	False	AATAAA	-13	NA	45817794	45841010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45818338_45819825_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
transcript_138203.known	chr9	+	3599	17	FSM	ENSMUSG00000035382.10	ENSMUST00000216672.2	3599	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.2261900816795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGTTGAATTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	45818282	45840957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45818602_45819825_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
transcript_13821.known	chr10	-	864	7	FSM	ENSMUSG00000034024.9	ENSMUST00000219036.2	864	7	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_6	772.545575786093	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTGTATGCCGGAACGT	NA	False	NA	NA	False	AAGAAA	-40	NA	116899280	116896550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899064
transcript_138214.known	chr9	-	3964	14	FSM	ENSMUSG00000042790.17	ENSMUST00000058720.13	3964	14	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_13	9.64395754655542	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCTTGCCTTATTGTC	9120	False	NA	17	True	NA	NA	NA	45818175	45774806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
transcript_138220.known	chr9	-	2287	14	FSM	ENSMUSG00000042790.17	ENSMUST00000160699.9	2287	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_13	15.6941929485938	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGCCGTGTACATTTTTA	9086	False	NA	NA	False	NA	NA	NA	45818209	45776131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45818035
transcript_138224.known	chr9	-	2847	14	FSM	ENSMUSG00000042790.17	ENSMUST00000161187.8	2847	14	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_11	14.9741394434206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAATGCATCTGGGGG	9590	False	NA	NA	False	ATTAAA	-14	NA	45817705	45774988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811508_45811555_45816103_45816218_45817649
transcript_138228.known	chr9	-	3517	13	FSM	ENSMUSG00000042790.17	ENSMUST00000162369.8	3517	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_12	9.29456232906579	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTCCATTTCTCCCACCA	9624	False	NA	NA	False	AGTAAA	-27	NA	45817671	45775587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45776297_45777863_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
transcript_138232.known	chr9	+	6058	9	FSM	ENSMUSG00000032086.13	ENSMUST00000034591.11	6058	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	5.43139024560011	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAACTATCAGAGTTACAT	7298	False	NA	NA	False	AGTAAA	-13	NA	45749877	45775697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45750587_45764185_45764275_45765924_45766142_45767385_45767524_45768411_45768547_45769697_45769800_45770207_45770358_45770576_45770749_45771351
transcript_138239.nic	chr9	-	1001	6	ISM	ENSMUSG00000042790.17	ENSMUST00000162369.8	3517	13	-67	26568	-33	0	5prime_fragment	FALSE	canonical	3	35	junction_5	5.54977477020464	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAGCAGGACCTGAAAG	9557	False	NA	NA	False	NA	NA	NA	45817738	45802155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
transcript_138243.known	chr9	-	1595	5	FSM	ENSMUSG00000032085.6	ENSMUST00000034590.4	1595	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATATTAACAATTAGCTC	NA	False	NA	NA	False	NA	NA	NA	45847356	45840916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45841814_45842130_45842234_45842597_45842776_45842879_45843072_45847131
transcript_138244.known	chr9	-	4012	27	FSM	ENSMUSG00000034908.17	ENSMUST00000114573.9	4012	27	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_15	37.8730361062501	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGGGTCTTACTGATG	NA	False	NA	-32	True	AATAAA	-16	NA	45866275	45849172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45857803_45857867_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
transcript_138245.nic	chr9	-	4278	27	NIC	ENSMUSG00000034908.17	novel	4012	27	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	42.0485771487774	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGGGTCTTACTGATG	NA	False	NA	-32	True	AATAAA	-16	NA	45866592	45849172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45858838_45858851_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
transcript_138246.nic	chr9	-	4335	27	NIC	ENSMUSG00000034908.17	novel	4012	27	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_16	40.2004776385414	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGGGTCTTACTGATG	NA	False	NA	-32	True	AATAAA	-16	NA	45866592	45849172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45858926_45858996_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
transcript_138249.known	chr9	-	4248	26	FSM	ENSMUSG00000034908.17	ENSMUST00000038488.17	4248	26	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_16	17.0789226826519	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGGGAGGTGCAGGAG	NA	False	NA	-14	True	AATAAA	-34	NA	45866556	45849154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
transcript_138255.known	chr9	-	714	6	FSM	ENSMUSG00000003131.8	ENSMUST00000215060.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	147.373539008874	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGGGGCTATGCAAAGA	4139	False	NA	NA	False	NA	NA	NA	45896122	45880082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890022_45896002
transcript_138256.known	chr9	-	794	6	FSM	ENSMUSG00000003131.8	ENSMUST00000214179.2	794	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	143.058869001541	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCAGTGTTACAGCATC	9711	False	NA	NA	False	NA	NA	NA	45896692	45879981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896599
transcript_138265.known	chr9	+	6287	25	FSM	ENSMUSG00000034135.16	ENSMUST00000126865.8	6287	25	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_17	28.1424945589406	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGTTTGCCTTACGGT	NA	False	NA	23	True	AATAAA	-25	NA	45924117	46135492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_45924429_46034514_46034632_46038307_46038372_46066676_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297_46113369_46115503_46115648_46119219_46119371_46120015_46120142_46120361_46120448_46120852_46120963_46121773_46122114_46122967_46123861_46130723_46130888_46131507_46131641_46132364_46132533_46133366
transcript_138269.nic	chr9	+	2690	14	ISM	ENSMUSG00000034135.16	ENSMUST00000120463.9	4180	24	-73	19390	-29	0	5prime_fragment	FALSE	canonical	3	79	junction_9	9.59474708356782	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCGGGGAAACTGTGGG	NA	False	NA	6	True	AATAAA	-14	NA	45924088	46114183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_45924429_46034514_46034632_46038307_46038372_46066676_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297
transcript_138272.known	chr9	+	2984	14	FSM	ENSMUSG00000032078.18	ENSMUST00000156440.8	2984	14	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_8	51.2505159448701	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGGTACAGCGTCCATT	NA	False	NA	NA	False	AATAAA	-18	NA	46184361	46193941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
transcript_13828.known	chr10	-	6420	10	FSM	ENSMUSG00000020170.5	ENSMUST00000020381.5	6420	10	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	21.0226215606891	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAAAGTTTTACTGTAT	NA	False	NA	-5	True	AATAAA	-28	NA	116984415	116905331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116910785_116912715_116912880_116913416_116913576_116914664_116914852_116916926_116917019_116920936_116921029_116935847_116935873_116936530_116936574_116938017_116938104_116984296
transcript_138281.known	chr9	+	2539	10	FSM	ENSMUSG00000032077.6	ENSMUST00000074957.5	2539	10	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	15.5737988261228	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGGCTCAGATGGGCT	NA	False	NA	NA	False	NA	NA	NA	46194305	46210408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
transcript_138296.known	chr9	-	1077	7	FSM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	0	0	0	0	multi-exon	FALSE	canonical	3	1058	junction_4	53.1959167188193	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCGGCACCCTCTGCTC	NA	False	NA	-1	True	AATAAA	-26	NA	48391911	48379811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
transcript_138306.known	chr9	-	553	3	FSM	ENSMUSG00000032026.8	ENSMUST00000214161.2	553	3	0	0	0	0	multi-exon	FALSE	canonical	3	1141	junction_1	21.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCTACATTCAGTCTG	NA	False	NA	NA	False	NA	NA	NA	48391893	48386215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_48386498_48390609_48390694_48391706
transcript_138307.known	chr9	-	1780	4	FSM	ENSMUSG00000032026.8	ENSMUST00000213508.2	1780	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	526.615820330364	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATGATTCAGTTAAAGT	NA	False	NA	-15	True	AATAAA	-10	NA	48391915	48384790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_48386200_48386419_48386498_48390609_48390694_48391706
transcript_138308.known	chr9	-	1867	6	FSM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	182.483314305719	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGAGAATGTGTCTC	NA	False	NA	-12	True	ATTAAA	-4	NA	48406594	48400008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48405582_48405688_48406454
transcript_138309.known	chr9	-	1773	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	15.188400179084	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTGTCTCTTTATTTT	NA	False	NA	-4	True	ATTAAA	-12	NA	48406597	48400000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
transcript_13831.known	chr10	-	2145	6	FSM	ENSMUSG00000020170.5	ENSMUST00000219483.2	2145	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	43.0330105848987	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAACAACACATAT	NA	False	NA	NA	False	NA	NA	NA	116984400	116918709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_116920505_116920936_116921029_116935847_116935873_116936530_116936574_116938017_116938104_116984296
transcript_138311.known	chr9	-	2703	1	FSM	ENSMUSG00000042396.11	ENSMUST00000213525.2	2703	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	48406599	48403896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_48403900_48406600
transcript_138312.known	chr9	+	531	1	FSM	ENSMUSG00000042293.9	ENSMUST00000048824.9	531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGGTGTGACGGCAGT	2783	False	NA	14	True	NA	NA	NA	48406741	48407272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_48406700_48407300
transcript_138313.known	chr9	-	1043	3	FSM	ENSMUSG00000032271.14	ENSMUST00000034808.12	1043	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	2.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAGTGCTCACTGTATG	NA	False	NA	10	True	ATTAAA	-33	NA	48516453	48503176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_48503663_48514653_48514862_48516104
transcript_138314.known	chr9	-	2082	9	FSM	ENSMUSG00000032269.9	ENSMUST00000003826.8	2082	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.11102430216445	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTCTGTCTGTGACCATT	NA	False	NA	NA	False	AATAAA	-16	NA	48822399	48810513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_48811309_48811860_48812083_48812173_48812385_48812717_48812879_48815876_48816047_48817582_48817693_48818653_48818699_48819894_48820062_48822198
transcript_13832.known	chr10	-	1327	7	FSM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	39.2074256005444	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCTGCCTCTTGTG	3371	False	NA	-14	True	AATAAA	-14	NA	117060412	117051126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
transcript_138322.known	chr9	+	4133	24	FSM	ENSMUSG00000032267.9	ENSMUST00000047349.8	4133	24	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_8	78.9995812484415	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896764	48953810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
transcript_138325.known	chr9	+	4109	24	FSM	ENSMUSG00000032267.9	ENSMUST00000213874.2	4109	24	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_12	166.491369690667	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896713	48953810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935280_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
transcript_138346.known	chr9	+	2863	16	FSM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_12	29.9965923990635	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGAGTGTCTTTAATAA	NA	False	NA	20	True	AGTAAA	-16	NA	48966912	48990072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984502_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
transcript_138351.nic	chr9	+	2232	15	ISM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	-38	1213	-38	-1213	5prime_fragment	FALSE	canonical	3	236	junction_12	29.9752448884484	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAAGAAGAGGTTCCCGT	NA	False	NA	NA	False	AAGAAA	-1	NA	48966874	48988859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984502_48984673_48985318_48985450_48986204_48986337_48988751
transcript_138358.known	chr9	+	1272	5	FSM	ENSMUSG00000032264.10	ENSMUST00000215706.2	1272	5	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_4	30.2189923723476	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48967081	48973305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354
transcript_138365.known	chr9	-	3628	22	FSM	ENSMUSG00000040219.5	ENSMUST00000055096.5	3628	22	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	5.49706167646225	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTCTCTTTCTTCT	NA	False	NA	NA	False	AAAACA	-45	NA	49397525	49348262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_49349757_49351456_49351683_49353136_49353237_49354401_49354504_49355967_49356037_49356484_49356584_49357041_49357180_49357824_49357886_49359226_49359320_49364623_49364793_49367160_49367250_49368132_49368203_49369295_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383184_49383682_49383844_49395969_49396043_49397445
transcript_138374.known	chr9	-	2525	14	FSM	ENSMUSG00000039542.17	ENSMUST00000192584.2	2525	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	45.8701537594672	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACGGTGACGAAATAATTA	8684	False	NA	NA	False	AATAAA	-22	NA	49710058	49442575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_49443274_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125_49481201_49709977
transcript_138376.known	chr9	-	768	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1344	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAGACAGGGAATCCC	NA	False	NA	NA	False	NA	NA	NA	50256268	50255500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50255500_50256300
transcript_138377.known	chr9	+	1689	4	FSM	ENSMUSG00000032068.15	ENSMUST00000114474.8	1689	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	3.39934634239519	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTTCTATACCGTCCA	NA	False	NA	NA	False	AATAAA	-17	NA	50405824	50416782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50406047_50410394_50410600_50412372_50412429_50415576
transcript_138378.nic	chr9	-	1148	7	NIC	ENSMUSG00000032067.7	novel	589	7	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	39.4574313518872	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7944	False	NA	NA	False	AATAAA	-18	NA	50439966	50432916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439445_50439533_50439856
transcript_13838.known	chr10	+	364	1	FSM	ENSMUSG00000112462.2	ENSMUST00000218027.2	364	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTAAGAGGGTCATGTTC	NA	False	NA	NA	False	NA	NA	NA	117060493	117060857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_117060500_117060900
transcript_138381.known	chr9	-	1046	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7959	False	NA	NA	False	AATAAA	-18	NA	50439951	50432916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
transcript_138384.known	chr9	-	895	5	FSM	ENSMUSG00000032065.7	ENSMUST00000034568.7	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	2.27760839478607	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATATTTCCATTTGATT	6977	False	NA	NA	False	AATAAA	-21	NA	50472610	50468224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470599_50472525
transcript_138386.known	chr9	-	2118	12	FSM	ENSMUSG00000032066.10	ENSMUST00000119103.2	2118	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	1.50481321429517	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGATCATGTATATTTTT	9237	False	NA	NA	False	ATTAAA	-19	NA	50466481	50444386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50444820_50445909_50446021_50446777_50446961_50447530_50447669_50450145_50450314_50451396_50451558_50452342_50452472_50455756_50455860_50456646_50456763_50457164_50457377_50461838_50462042_50466320
transcript_138389.known	chr9	-	1231	4	FSM	ENSMUSG00000000171.6	ENSMUST00000000175.6	1231	4	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_3	46.783187863448	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATATAATGAAAATACAT	NA	False	NA	NA	False	AATAAA	-3	NA	50515112	50507656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50508551_50510060_50510206_50511847_50511965_50515037
transcript_13839.known	chr10	-	2227	11	FSM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	215.998518513438	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATGTGTAAAGCTGTTCA	4515	False	NA	-12	True	AATAAA	-13	NA	117212834	117184946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_138391.known	chr9	-	732	7	FSM	ENSMUSG00000059820.15	ENSMUST00000155435.8	732	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	47.355921840181	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAATCACTTTCCCTTTA	89	False	NA	NA	False	AAAAAG	-17	NA	50528581	50518967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50527957_50527985_50528527
transcript_138395.known	chr9	-	1225	6	FSM	ENSMUSG00000059820.15	ENSMUST00000147671.2	1225	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_5	31.9023510105447	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAGAGCAAGAAAAAGTCC	106	False	NA	NA	False	NA	NA	NA	50528564	50519000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50527957
transcript_138396.known	chr9	-	3316	6	FSM	ENSMUSG00000059820.15	ENSMUST00000131351.8	3316	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_5	32.2800247831379	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTCTGTTACTTTTTAA	NA	False	NA	-3	True	AATAAA	-17	NA	50528764	50516539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50528527
transcript_138404.known	chr9	+	518	2	FSM	ENSMUSG00000039016.6	ENSMUST00000044051.6	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_1	0	503	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTTCTTCTAAATCCC	8813	False	NA	21	True	AATAAA	-15	NA	50515209	50516620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50515340_50516232
transcript_138410.known	chr9	-	4035	14	FSM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	0	0	0	0	multi-exon	FALSE	canonical	3	1156	junction_6	75.3673449604703	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGATCTGTTGGTAGTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50571080	50545932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
transcript_138436.known	chr9	-	5719	20	FSM	ENSMUSG00000032064.18	ENSMUST00000117646.8	5719	20	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_7	7.12181308422569	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCCACTTCTTCATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	50639367	50574055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50577576_50578959_50579069_50580749_50580856_50592786_50592854_50593332_50593501_50593836_50593927_50595024_50595097_50595173_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
transcript_138443.nic	chr9	-	1274	7	ISM	ENSMUSG00000032064.18	ENSMUST00000117646.8	5719	20	-169	30822	-169	68	5prime_fragment	FALSE	canonical	3	46	junction_1	1.77169096878911	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAGGAAGCAAAGAAAATG	NA	False	NA	NA	False	AAAAAG	-4	NA	50639536	50604877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
transcript_138446.known	chr9	-	1242	4	FSM	ENSMUSG00000032062.4	ENSMUST00000239417.2	1242	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	2.16024689946929	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGATTGATTGTTCCTG	2131	False	NA	NA	False	AATAAA	-17	NA	50657821	50650990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
transcript_138447.known	chr9	-	792	1	FSM	ENSMUSG00000032062.4	ENSMUST00000215877.2	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAATACAAAATAAA	2141	False	NA	NA	False	NA	NA	NA	50657811	50657019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50657000_50657800
transcript_138449.known	chr9	+	1117	4	FSM	ENSMUSG00000032060.11	ENSMUST00000217475.2	1117	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.40870359029762	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50662624	50667936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50662877_50664380_50664778_50665811_50665935_50667591
transcript_138450.known	chr9	+	946	3	FSM	ENSMUSG00000032060.11	ENSMUST00000034562.9	946	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	1.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATTGAAAATCTGTGAC	NA	False	NA	NA	False	TTTAAA	-19	NA	50664206	50667843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50664778_50665811_50665935_50667591
transcript_138451.known	chr9	-	552	2	FSM	ENSMUSG00000038086.5	ENSMUST00000217159.2	552	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663654	50662377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50662752_50663476
transcript_138452.known	chr9	-	773	2	FSM	ENSMUSG00000038086.5	ENSMUST00000042790.5	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663593	50662377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50663034_50663476
transcript_138453.known	chr9	+	846	4	FSM	ENSMUSG00000032060.11	ENSMUST00000214962.2	846	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.33999733546453	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAACCTGCCTCGTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	50664292	50667930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50664385_50664485_50664778_50665811_50665935_50667591
transcript_138459.known	chr9	+	2873	15	FSM	ENSMUSG00000032059.14	ENSMUST00000034561.11	2873	15	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	29.092042533578	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTAAGATTTTTTTAA	NA	False	NA	24	True	TTTAAA	-31	NA	50686318	50754828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50686819_50687843_50687980_50690269_50690405_50694557_50694629_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
transcript_138463.nic	chr9	+	2824	15	NIC	ENSMUSG00000032059.14	novel	463	5	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.3522794004038	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTAAGATTTTTTTAA	NA	False	NA	24	True	TTTAAA	-31	NA	50686832	50754828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_50687284_50687843_50687980_50690269_50690405_50694557_50694629_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
transcript_138467.nnic	chr9	+	2512	14	NIC	ENSMUSG00000032059.14	novel	2873	15	NA	NA	-48	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_8	55.2657913388354	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTAAGATTTTTTTAA	NA	False	NA	24	True	TTTAAA	-31	NA	50686556	50754828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_50686819_50687843_50687980_50690269_50690405_50694557_50694629_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
transcript_138469.known	chr9	+	2530	14	FSM	ENSMUSG00000032059.14	ENSMUST00000162073.8	2530	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	42.7472273227982	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAATGTTTCAGTCTGCT	NA	False	NA	38	True	TTTAAA	-45	NA	50686604	50754842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50686819_50687843_50687980_50690269_50690405_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
transcript_138474.nic	chr9	+	2750	14	NIC	ENSMUSG00000032059.14	novel	463	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	59.440487865033	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTAAGATTTTTTTAA	NA	False	NA	24	True	TTTAAA	-31	NA	50686835	50754828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_50687284_50687843_50687980_50690269_50690405_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
transcript_138480.known	chr9	+	2658	5	FSM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_2	7.15454401062709	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTGGAGCATGTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	50679535	50684648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50679756_50679987_50680145_50681409_50681614_50681931_50682091_50682730
transcript_138485.known	chr9	-	2082	4	FSM	ENSMUSG00000037971.11	ENSMUST00000042468.9	2082	4	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_2	3.74165738677394	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAATAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50679752	50674127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50675317_50675523_50675591_50675995_50676227_50679157
transcript_138487.known	chr9	-	692	4	FSM	ENSMUSG00000037971.11	ENSMUST00000176238.2	692	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12.5521135891752	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCCCGGGAATCTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	50679460	50675156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50675317_50675523_50675591_50676064_50676227_50679157
transcript_138488.known	chr9	+	2527	3	FSM	ENSMUSG00000037845.15	ENSMUST00000176619.2	2527	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTTCTGGACTCTTGTG	NA	False	NA	2	True	AAAAAG	-17	NA	50679537	50683969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50680145_50681409_50682091_50682730
transcript_138491.known	chr9	-	3552	16	FSM	ENSMUSG00000037112.17	ENSMUST00000041375.11	3552	16	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	12.14907403879	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGGTACTCTTTTAT	NA	False	NA	NA	False	AAAAAG	-6	NA	50920373	50804100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50804690_50806643_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818872_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
transcript_138493.known	chr9	-	4107	16	FSM	ENSMUSG00000037112.17	ENSMUST00000176663.8	4107	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	10.4796098315835	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGGTACTCTTTTAT	NA	False	NA	NA	False	AAAAAG	-6	NA	50920236	50804100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50805382_50806643_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818872_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
transcript_138496.known	chr9	-	2183	4	FSM	ENSMUSG00000037112.17	ENSMUST00000177346.8	2183	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.54606056566195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAACAATAAAAAAATCAC	NA	False	NA	NA	False	NA	NA	NA	50920300	50845135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_50846878_50906907_50906972_50909799_50909917_50920040
transcript_138498.known	chr9	+	3647	17	FSM	ENSMUSG00000032058.15	ENSMUST00000034560.14	3647	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	228.008189271789	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATGGCTAACACATCTG	NA	False	NA	NA	False	ATTAAA	-17	NA	50768223	50805529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50794773_50794896_50802916_50803018_50803955
transcript_138499.known	chr9	+	2195	17	FSM	ENSMUSG00000032058.15	ENSMUST00000174628.8	2195	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	228.008189271789	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGCACTTTTTGCCGAA	NA	False	NA	NA	False	AATAAA	-13	NA	50768223	50804097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50794773_50794896_50802936_50803018_50803955
transcript_138507.known	chr9	+	3430	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTAATTTCACAGTTTC	-13	True	NA	NA	False	NA	NA	NA	50768236	50792731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
transcript_13851.known	chr10	-	2200	10	FSM	ENSMUSG00000055531.13	ENSMUST00000176686.8	2200	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	212.334001975806	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTAAAGCTGTTCACGT	4471	False	NA	-9	True	AATAAA	-16	NA	117212878	117184943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117185407_117191839_117192033_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_138513.known	chr9	+	1931	14	FSM	ENSMUSG00000032058.15	ENSMUST00000175645.8	1931	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	160.495165736704	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCCTCATACAGTCATCT	7	True	NA	NA	False	NA	NA	NA	50768256	50791387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
transcript_138521.known	chr9	-	875	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	1037	False	NA	-5	True	AATAAA	-17	NA	51874846	51854605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
transcript_138525.known	chr9	+	4380	14	FSM	ENSMUSG00000032050.19	ENSMUST00000000590.16	4380	14	0	0	0	0	multi-exon	FALSE	canonical	3	758	junction_13	85.8483594974439	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTTGGAGGTCCGCTGTT	NA	False	NA	15	True	AATAAA	-15	NA	51959414	52000029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453_51984585_51992318_51992480_51993742_51993836_51996402_51996646_51997614
transcript_138527.known	chr9	+	1502	11	FSM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	286.507521716272	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTGGTTGTCTTGTAA	NA	False	NA	NA	False	AATAAA	-23	NA	51959570	51986474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453_51984585_51986284
transcript_138528.nic	chr9	+	1576	10	ISM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	-350	1976	-194	-1976	5prime_fragment	FALSE	canonical	3	794	junction_8	74.7202188909475	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAGGAAAGAATAGAAC	NA	False	NA	24	True	NA	NA	NA	51959220	51984498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453
transcript_13853.known	chr10	-	6526	10	FSM	ENSMUSG00000055531.13	ENSMUST00000069168.13	6526	10	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_5	44.0656076524286	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATACTTTGCAGTTTGTT	4474	False	NA	-12	True	AATAAA	-13	NA	117212875	117180577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_138530.nic	chr9	+	1532	9	ISM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	-350	5395	-194	-5395	5prime_fragment	FALSE	canonical	3	794	junction_8	79.2429018903271	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCGTGTGTCCTGCTCAG	NA	False	NA	NA	False	NA	NA	NA	51959220	51981079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914
transcript_138531.nic	chr9	+	1257	8	ISM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	-273	6304	-117	-6304	5prime_fragment	FALSE	canonical	3	811	junction_7	65.2367744044253	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCGTTATAAAGCCAATTGA	NA	False	NA	NA	False	NA	NA	NA	51959297	51980170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106
transcript_138533.nic	chr9	+	768	4	ISM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	-350	10215	-194	-10215	5prime_fragment	FALSE	canonical	3	891	junction_1	43.1457478270519	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTGTATAATAACATTAA	NA	False	NA	NA	False	AATAAA	-8	NA	51959220	51976259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159
transcript_138534.nic	chr9	+	573	2	ISM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	-350	14282	-194	-14282	5prime_fragment	FALSE	canonical	3	891	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCGAAGCCAGTAAGTGTG	NA	False	NA	NA	False	AAAAAG	-5	NA	51959220	51972192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_51959733_51972131
transcript_138535.known	chr9	-	3128	18	FSM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	33.3641956320396	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	-3	True	AATAAA	-17	NA	53159353	53009934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
transcript_138537.nic	chr9	-	2380	15	ISM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	-110	58572	-110	-58572	5prime_fragment	FALSE	canonical	3	249	junction_5	29.2579136338202	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAATACAGGAAGAAAAT	NA	False	NA	42	True	NA	NA	NA	53159463	53068506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53068633_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
transcript_138540.nic	chr9	-	2197	14	ISM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	-110	61320	-110	-61320	5prime_fragment	FALSE	canonical	3	249	junction_4	29.3672925177396	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAATGAAAAGAAGTTTTAA	NA	False	NA	NA	False	AAGAAA	-31	NA	53159463	53071254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
transcript_138544.nic	chr9	-	1522	11	ISM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	-110	111105	-110	-111105	5prime_fragment	FALSE	canonical	3	249	junction_1	25.6795638592247	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAATCATTTTTAGCTCA	NA	False	NA	NA	False	ATTAAA	-41	NA	53159463	53121039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
transcript_138545.nic	chr9	-	327	2	ISM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	-39	141851	-39	-141851	5prime_fragment	FALSE	canonical	3	341	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTGAAAGGTAAGTATATA	NA	False	NA	NA	False	AATGAA	-38	NA	53159392	53151785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53151838_53159117
transcript_138546.nic	chr9	+	4620	4	NIC	ENSMUSG00000034584.4	novel	2315	3	NA	NA	11	-1213	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	2.05480466765633	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAACACAGATGAAACAAAA	NA	False	NA	NA	False	AATAAA	-2	NA	53252394	53287601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_53252771_53264453_53264503_53278376_53278513_53283542
transcript_138549.known	chr9	+	3642	8	FSM	ENSMUSG00000034487.5	ENSMUST00000037853.5	3642	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	8.89622712968015	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTTGCCTGCATAAATAT	9272	False	NA	NA	False	NA	NA	NA	53295324	53313167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_53295587_53299679_53299878_53301734_53302022_53303214_53303432_53305235_53305433_53307143_53307339_53309219_53309325_53310986
transcript_138559.nic	chr9	-	854	5	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-142	5251	-75	96	5prime_fragment	FALSE	canonical	3	85	junction_4	8.07774721070176	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACGACTCAGAGTTTAAT	NA	False	NA	-3	True	AATAAA	-17	NA	53448115	53438397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_138562.nnic	chr9	+	4135	18	NNC	ENSMUSG00000033054.8	novel	6062	18	NA	NA	-21	-3169	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_13	33.0988871743437	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGGCAAGTTTGAAAGTT	NA	False	NA	NA	False	AAAAAG	-8	NA	53448325	53482473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_53448489_53456467_53456587_53460209_53460271_53461337_53461411_53462897_53462939_53463549_53463775_53465184_53465273_53466356_53466442_53467687_53467780_53467867_53467956_53469424_53469522_53470381_53470508_53473341_53474284_53474454_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346
transcript_138563.known	chr9	+	6062	18	FSM	ENSMUSG00000033054.8	ENSMUST00000035850.8	6062	18	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_15	17.5635277962748	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAGCTCTATGTGTGTTT	NA	False	NA	NA	False	TATAAA	-18	NA	53448346	53485642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_53448489_53456467_53456587_53460209_53460271_53461337_53461411_53462897_53462939_53463549_53463775_53465184_53465273_53466356_53466442_53467687_53467780_53467867_53467956_53469424_53469522_53470381_53470508_53473341_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346_53482479_53483870
transcript_138567.nic	chr9	+	4215	17	ISM	ENSMUSG00000033054.8	ENSMUST00000035850.8	6062	18	-24	3263	-24	-3263	5prime_fragment	FALSE	canonical	3	111	junction_15	17.5275452859207	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGGAAAATTGAGGAATTAGA	NA	False	NA	NA	False	AAGAAA	-1	NA	53448322	53482379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_53448489_53456467_53456587_53460209_53460271_53461337_53461411_53462897_53462939_53463549_53463775_53465184_53465273_53466356_53466442_53467687_53467780_53467867_53467956_53469424_53469522_53470381_53470508_53473341_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346
transcript_138568.nic	chr9	+	4398	17	ISM	ENSMUSG00000033054.8	ENSMUST00000035850.8	6062	18	-113	3169	-113	-3169	5prime_fragment	TRUE	canonical	3	111	junction_15	17.5275452859207	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGGCAAGTTTGAAAGTT	NA	False	NA	NA	False	AAAAAG	-8	NA	53448233	53482473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_53448489_53456467_53456587_53460209_53460271_53461337_53461411_53462897_53462939_53463549_53463775_53465184_53465273_53466356_53466442_53467687_53467780_53467867_53467956_53469424_53469522_53470381_53470508_53473341_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346
transcript_138575.known	chr9	-	3405	12	FSM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	11.4912830779187	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACATTAAAGTTACAGA	NA	False	NA	NA	False	NA	NA	NA	53521682	53491821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505807_53505993_53506090_53506582_53506701_53509384_53509433_53521512
transcript_138580.known	chr9	-	5945	20	FSM	ENSMUSG00000032030.17	ENSMUST00000120122.8	5945	20	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_17	131.010434973792	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCAGTATCATGTACCTT	NA	False	NA	57	True	AGTAAA	-16	NA	53581314	53525881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569257_53569486_53569870_53569981_53581150
transcript_138588.known	chr9	-	3585	19	FSM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_17	44.7831882587348	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATGTGTGGGTATACG	NA	False	NA	57	True	AATGAA	-14	NA	53578811	53528323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
transcript_138603.nic	chr9	-	2648	18	ISM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	-49	4135	-49	-4135	5prime_fragment	FALSE	canonical	3	311	junction_16	44.6107346617249	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGTAAAGGGAAAAGGAAT	NA	False	NA	NA	False	AAGAAA	-40	NA	53578860	53532458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
transcript_138605.nic	chr9	-	2526	18	ISM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	19	4189	-5	-4189	5prime_fragment	FALSE	canonical	3	311	junction_16	44.6107346617249	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAGAGAAGAAGAAAATGAA	NA	False	NA	NA	False	NA	NA	NA	53578792	53532512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
transcript_138611.nic	chr9	-	2193	15	ISM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	-49	6660	-49	5531	5prime_fragment	FALSE	canonical	3	311	junction_13	48.5544087827758	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACAGTGGTAGAAAATTAC	NA	False	NA	NA	False	NA	NA	NA	53578860	53534983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
transcript_138619.nic	chr9	-	1229	7	ISM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	-49	25544	-49	84	5prime_fragment	FALSE	canonical	3	311	junction_5	64.977987725759	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCACTCCGATACTTAGAA	NA	False	NA	NA	False	ATTAAA	-15	NA	53578860	53553867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
transcript_138623.nic	chr9	-	1166	6	ISM	ENSMUSG00000032030.17	ENSMUST00000123499.8	1589	8	-12	8743	8	0	5prime_fragment	FALSE	canonical	3	311	junction_4	71.07629703354	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTAGTCTGCTGATAG	NA	False	NA	NA	False	NA	NA	NA	53578799	53553951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
transcript_138627.known	chr9	-	2971	2	FSM	ENSMUSG00000055069.4	ENSMUST00000068449.4	2971	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAGAACATAAATTAT	NA	False	NA	NA	False	NA	NA	NA	53617532	53595409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_53598037_53617188
transcript_138632.known	chr9	-	750	1	FSM	ENSMUSG00000082465.2	ENSMUST00000118010.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	8765	False	NA	NA	False	NA	NA	NA	53601583	53600833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_53600800_53601600
transcript_138635.known	chr9	+	2558	8	FSM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	9.10931346681706	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	39	True	ATTAAA	-15	NA	53678821	53725438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_53679179_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
transcript_138638.known	chr9	-	4403	2	FSM	ENSMUSG00000074345.5	ENSMUST00000098760.5	4403	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTATTAATTTTGACTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	53975672	53930688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_53934922_53975502
transcript_138641.nic	chr9	-	2816	13	ISM	ENSMUSG00000041268.18	ENSMUST00000144736.8	2958	16	-197	22158	-142	0	5prime_fragment	FALSE	canonical	3	29	junction_1	10.0950345329881	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACCGTGGTTGGTAGTTG	6790	False	NA	NA	False	AATAAA	-18	NA	54409052	54352614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_54352789_54353655_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120_54381200_54384740_54384813_54387623_54387750_54408634
transcript_138642.known	chr9	-	10614	44	FSM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_28	15.8606697115632	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTAAACTGTTTATTCG	6932	False	NA	0	True	AATAAA	-27	NA	54408910	54272441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_54273912_54274837_54275056_54276493_54276547_54277155_54277248_54281936_54282015_54282562_54282691_54282789_54282851_54283506_54283646_54285997_54286120_54286200_54286288_54287058_54287122_54288191_54288310_54289136_54289339_54289919_54290006_54290940_54291072_54294696_54294876_54300911_54301161_54303523_54303655_54305330_54305408_54307225_54307418_54308200_54309271_54311240_54311506_54313031_54313198_54313880_54313979_54316434_54316605_54318883_54318995_54322713_54324388_54327028_54327257_54330513_54330634_54333665_54333790_54335317_54335408_54352666_54352789_54353655_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171_54380308_54381120_54381200_54384740_54384813_54387623_54387750_54408634
transcript_138643.known	chr9	-	1433	6	FSM	ENSMUSG00000037493.7	ENSMUST00000041901.7	1433	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.4	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTCTCCGTGTCTGTCA	6916	False	NA	NA	False	AATAAA	-20	NA	54467502	54452077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_54452769_54453172_54453369_54455616_54455765_54457064_54457177_54461770_54461806_54467251
transcript_138647.known	chr9	+	1812	12	FSM	ENSMUSG00000032279.12	ENSMUST00000215273.2	1812	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	727.622881616047	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_54493828_54497141_54497205_54499444_54499540_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
transcript_138651.known	chr9	+	2403	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	0	0	0	0	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGGCGTTTGCATTCTC	NA	False	NA	35	True	AATAAA	-15	NA	54493794	54511945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
transcript_138661.known	chr9	+	2580	11	FSM	ENSMUSG00000032279.12	ENSMUST00000217484.2	2580	11	0	0	0	0	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGGCGTTTGCATTCTC	NA	False	NA	35	True	AATAAA	-15	NA	54493617	54511945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
transcript_138663.known	chr9	-	2880	14	FSM	ENSMUSG00000032281.12	ENSMUST00000034822.12	2880	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.25320284859643	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGATGTCTTTTGTCAATG	NA	False	NA	NA	False	ATTAAA	-26	NA	54569154	54512160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_54512761_54516299_54516547_54516978_54517119_54522019_54522238_54523150_54523382_54525305_54525488_54529149_54529327_54529720_54529871_54529959_54530041_54534714_54534836_54535153_54535243_54535689_54535911_54549879_54549981_54568832
transcript_138668.known	chr9	-	1290	11	FSM	ENSMUSG00000061559.16	ENSMUST00000121204.8	1290	11	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_10	185.351584832717	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5421	False	NA	-8	True	AATAAA	-14	NA	54641803	54624447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641652
transcript_138669.known	chr9	-	1162	11	FSM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_9	343.30050975785	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5443	False	NA	-3	True	AATAAA	-19	NA	54641781	54624442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641758
transcript_138678.known	chr9	+	3003	7	FSM	ENSMUSG00000032285.16	ENSMUST00000070070.8	3003	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	1.95078331845327	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATGGCTTTGCTTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	54606842	54623599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_54607145_54613346_54613528_54615666_54615772_54616416_54616645_54617785_54618017_54621553_54621655_54621744
transcript_138683.known	chr9	+	802	4	FSM	ENSMUSG00000032291.9	ENSMUST00000034830.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	35.3679076125361	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGGGCTCTTTCTTTGA	NA	False	NA	18	True	ATTAAA	-14	NA	54672031	54680394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_54672256_54672766_54672946_54675667_54675782_54680109
transcript_138684.known	chr9	+	5770	22	FSM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_6	38.4690587449917	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTCGTTGTGTTTTAT	2626	False	NA	14	True	AATAAA	-19	NA	54771072	54819814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
transcript_138688.nnic	chr9	+	5656	21	NIC	ENSMUSG00000032293.9	novel	5770	22	NA	NA	-105	0	combination_of_known_splicesites	TRUE	canonical	3	11	junction_4	64.8093164599041	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTCGTTGTGTTTTAT	2521	False	NA	14	True	AATAAA	-19	NA	54770967	54819814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
transcript_138694.known	chr9	+	5110	5	FSM	ENSMUSG00000035878.14	ENSMUST00000039742.8	5110	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.29903810567666	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTTTGGTCTTTTTTTC	NA	False	NA	13	True	ATTAAA	-26	NA	54824566	54857208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_54825143_54827757_54828109_54829478_54829619_54844422_54844607_54853349
transcript_138699.known	chr9	+	1165	9	FSM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	0	0	0	0	multi-exon	FALSE	canonical	3	1650	junction_8	116.746252616519	1444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGTGAAAGGATACTT	NA	False	NA	2	True	AATAAA	-15	NA	54858073	54865314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
transcript_138707.known	chr9	+	562	6	FSM	ENSMUSG00000032301.14	ENSMUST00000169008.8	562	6	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_4	75.8957179292745	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTGTTCTGCTTTA	NA	False	NA	NA	False	AATAAA	-8	NA	54858088	54862316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164
transcript_138714.known	chr9	+	3456	13	FSM	ENSMUSG00000032307.17	ENSMUST00000059555.15	3456	13	0	0	0	0	multi-exon	TRUE	canonical	3	762	junction_1	63.2035402489449	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCACCTTTCCCTCTT	NA	False	NA	10	True	AATAAA	-18	NA	55056137	55114813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55057111_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
transcript_138716.known	chr9	+	1680	12	FSM	ENSMUSG00000032307.17	ENSMUST00000121677.8	1680	12	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_2	214.811583786642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGGTTTAGAAATTTTAG	NA	False	NA	NA	False	AATAAA	-19	NA	55056678	55113683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55057111_55070251_55070354_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
transcript_13872.known	chr10	-	3819	9	FSM	ENSMUSG00000055531.13	ENSMUST00000177145.8	3819	9	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_4	46.3355627461241	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTAAGTGTCAGTCT	4516	False	NA	NA	False	AATAAA	-22	NA	117212833	117189709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_138723.known	chr9	-	721	6	FSM	ENSMUSG00000032311.18	ENSMUST00000144939.8	721	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	7.93977329651168	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCACGGGGGAAGAGCAAA	247	False	NA	75	True	TTTAAA	-43	NA	55149745	55128505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_55128693_55133899_55134039_55135136_55135223_55143723_55143804_55149344_55149492_55149663
transcript_138738.known	chr9	+	2112	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	1373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	11	True	AATAAA	-18	NA	55116208	55131717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
transcript_138742.known	chr9	+	1921	7	FSM	ENSMUSG00000032309.16	ENSMUST00000140375.8	1921	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	472.947759623971	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTCAACTGGTGTTGTA	NA	False	NA	2	True	AATAAA	-9	NA	55116271	55131708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125717_55125764_55128305_55128472_55130523
transcript_138750.known	chr9	+	2009	6	FSM	ENSMUSG00000032309.16	ENSMUST00000146201.8	2009	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	392.751626349274	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTGTTGTAATTATTG	NA	False	NA	9	True	AATAAA	-16	NA	55116473	55131715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
transcript_138753.known	chr9	+	2408	11	FSM	ENSMUSG00000032313.12	ENSMUST00000034862.5	2408	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.98997487421324	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGGCTAGTAGAGGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	55234232	55345629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55234285_55284763_55284898_55287962_55288152_55305024_55305180_55307857_55307932_55321147_55321205_55322223_55322363_55325291_55325408_55337558_55337749_55342474_55342538_55344390
transcript_138757.known	chr9	-	1392	12	FSM	ENSMUSG00000032314.15	ENSMUST00000034866.9	1392	12	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_8	89.5680174619608	1250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	False	NA	-13	True	AATAAA	-30	NA	55419527	55361791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
transcript_138772.known	chr9	+	1854	6	FSM	ENSMUSG00000032318.13	ENSMUST00000034869.11	1854	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCGCGCCTGTGTGCTGTT	NA	False	NA	NA	False	AATAAA	-17	NA	55448431	55453464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55448623_55449383_55449574_55449680_55449944_55451359_55451644_55452224_55452393_55452706
transcript_138773.known	chr9	-	5231	33	FSM	ENSMUSG00000034007.11	ENSMUST00000214747.2	5231	33	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_24	10.0574521500229	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAAGCACTGCGGGTGCT	NA	False	NA	NA	False	AATAAA	-19	NA	55845385	55457162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_55458156_55460754_55460807_55463368_55463561_55487490_55487641_55493502_55493738_55510049_55510206_55517125_55517359_55563188_55563313_55593163_55593280_55650826_55650954_55665276_55665343_55669511_55669649_55714296_55714405_55714889_55715043_55716385_55716468_55722644_55722788_55723937_55724094_55745403_55745545_55765364_55765477_55765691_55765810_55766282_55766359_55767031_55767203_55771687_55771889_55781928_55782189_55791130_55791289_55799455_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845353
transcript_138776.nic	chr9	-	2890	22	ISM	ENSMUSG00000034007.11	ENSMUST00000214747.2	5231	33	-120	212366	-102	-18616	5prime_fragment	FALSE	canonical	3	40	junction_13	10.9027862631219	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACGGATGAACATCAGGTA	NA	False	NA	NA	False	NA	NA	NA	55845505	55669528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_55669649_55714296_55714405_55714889_55715043_55716385_55716468_55722644_55722788_55723937_55724094_55745403_55745545_55765364_55765477_55765691_55765810_55766282_55766359_55767031_55767203_55771687_55771889_55781928_55782189_55791130_55791289_55799455_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845353
transcript_138777.nic	chr9	-	2259	17	ISM	ENSMUSG00000034007.11	ENSMUST00000214747.2	5231	33	-120	266800	-102	-73050	5prime_fragment	FALSE	canonical	3	40	junction_8	11.1663557170636	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCTCGTGATGAGGCTG	NA	False	NA	NA	False	AAGAAA	-2	NA	55845505	55723962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_55724094_55745403_55745545_55765364_55765477_55765691_55765810_55766282_55766359_55767031_55767203_55771687_55771889_55781928_55782189_55791130_55791289_55799455_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845353
transcript_138778.nic	chr9	-	1900	15	ISM	ENSMUSG00000034007.11	ENSMUST00000214747.2	5231	33	-120	308289	-102	-114539	5prime_fragment	FALSE	canonical	3	40	junction_6	11.5230470035012	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATGAAGAAAAACACATGAA	NA	False	NA	NA	False	AAAAAG	-4	NA	55845505	55765451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_55765477_55765691_55765810_55766282_55766359_55767031_55767203_55771687_55771889_55781928_55782189_55791130_55791289_55799455_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845353
transcript_13878.known	chr10	+	5195	9	FSM	ENSMUSG00000020183.12	ENSMUST00000020399.6	5195	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.14694550466471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTCTCTTTCCACTACT	NA	False	NA	NA	False	AATAAA	-19	NA	117465404	117523257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_117465433_117465625_117465789_117495672_117495771_117503853_117504027_117506071_117506257_117507500_117507672_117511844_117511998_117515867_117516017_117519182
transcript_138780.known	chr9	-	4370	33	FSM	ENSMUSG00000034007.11	ENSMUST00000217647.2	4370	33	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_22	14.3608626133669	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTTAGCTAATTCTGT	NA	False	NA	NA	False	AATAAA	-1	NA	55845394	55458050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_55458156_55460754_55460807_55463368_55463561_55487490_55487641_55493502_55493738_55510049_55510206_55517125_55517359_55563188_55563313_55593163_55593280_55650826_55650954_55665276_55665343_55669511_55669649_55714296_55714405_55714889_55715043_55716385_55716468_55722644_55722788_55723937_55724094_55745403_55745545_55765364_55765477_55765691_55765810_55766282_55766359_55767031_55767203_55771669_55771889_55781928_55782189_55791130_55791289_55799455_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845353
transcript_138784.known	chr9	+	2024	7	FSM	ENSMUSG00000032320.8	ENSMUST00000114276.3	2024	7	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_5	26.0666879795309	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGCACCTGAGACATTT	960	False	NA	18	True	ATTAAA	-19	NA	55949140	55966361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55949489_55949858_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
transcript_138788.known	chr9	+	1987	2	FSM	ENSMUSG00000032320.8	ENSMUST00000151585.2	1987	2	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATCATCTGTGCGTGTC	973	False	NA	NA	False	AATAAA	-25	NA	55949153	55951510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55949489_55949858
transcript_13879.known	chr10	+	2006	3	FSM	ENSMUSG00000020183.12	ENSMUST00000141991.2	2006	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCTGAGTAATTTTGT	NA	False	NA	NA	False	NA	NA	NA	117511797	117520839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_117511998_117515867_117516017_117519182
transcript_138793.known	chr9	+	1863	15	FSM	ENSMUSG00000032322.15	ENSMUST00000059206.8	1863	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	2.96922995583236	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTCCTTTGCTGGGGT	NA	False	NA	NA	False	AATAAA	-27	NA	55997245	56036172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55997729_56021513_56021615_56022346_56022422_56027584_56027620_56027830_56027938_56030042_56030106_56030545_56030645_56031031_56031078_56031877_56031958_56032407_56032507_56033210_56033308_56033865_56033957_56034768_56034822_56035010_56035145_56035872
transcript_138794.known	chr9	+	2637	14	FSM	ENSMUSG00000032322.15	ENSMUST00000147360.8	2637	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	3.04794042402445	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGCGGCACATTCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	55997259	56036160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_55997729_56021513_56021615_56022346_56022422_56027584_56027620_56027830_56027938_56030042_56030106_56030545_56030645_56031031_56031958_56032407_56032507_56033210_56033308_56033865_56033957_56034768_56034822_56035010_56035145_56035872
transcript_138798.known	chr9	-	1716	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	False	NA	-3	True	AATAAA	-17	NA	56068341	56043167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
transcript_1388.known	chr1	+	3570	10	FSM	ENSMUSG00000041684.12	ENSMUST00000114709.3	3570	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	6.90857402520436	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATTTTTGTGGTTCAGGC	NA	False	NA	NA	False	ATTAAA	-12	NA	44159127	44183930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
transcript_138804.nic	chr9	-	2468	4	ISM	ENSMUSG00000074305.10	ENSMUST00000061552.15	6996	7	-39	53554	-39	1874	5prime_fragment	FALSE	canonical	3	31	junction_1	3.39934634239519	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACAAGCGTAATAAGCCAT	NA	False	NA	NA	False	NA	NA	NA	56325390	56165966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_56168047_56225946_56226105_56281659_56281724_56325224
transcript_138805.known	chr9	-	1352	1	FSM	ENSMUSG00000074305.10	ENSMUST00000185775.2	1352	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAACCCAG	NA	False	NA	NA	False	NA	NA	NA	56325334	56323982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_56324000_56325300
transcript_138806.known	chr9	-	6996	7	FSM	ENSMUSG00000074305.10	ENSMUST00000061552.15	6996	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	5.42883249163411	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTGAGAACTGCAGAA	NA	False	NA	-8	True	NA	NA	NA	56325351	56112412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_56114896_56134385_56135129_56148443_56148629_56164810_56168047_56225946_56226105_56281659_56281724_56325224
transcript_138808.known	chr9	+	3778	10	FSM	ENSMUSG00000032329.5	ENSMUST00000034879.5	3778	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_9	43.8482230730809	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTGACCAGTTTTGCT	NA	False	NA	11	True	ATTAAA	-17	NA	56325892	56404220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105_56397249_56401816
transcript_138814.known	chr9	+	1700	9	FSM	ENSMUSG00000032329.5	ENSMUST00000215269.2	1700	9	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	23.7276210354093	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTCTTCCCTGATGAG	NA	False	NA	NA	False	AATAAA	-18	NA	56325927	56397609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105
transcript_138818.known	chr9	+	2468	8	FSM	ENSMUSG00000032329.5	ENSMUST00000217518.2	2468	8	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.8160580006954	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAGTTCTCAGAACA	NA	False	NA	NA	False	NA	NA	NA	56326107	56397565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897
transcript_13882.nic	chr10	-	3054	10	NIC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_9	135.429996494932	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGATTTGTCTTACACA	NA	False	NA	-19	True	AATAAA	-21	NA	117546200	117524799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545850
transcript_138822.known	chr9	+	988	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9070	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAACATATGGT	NA	False	NA	NA	False	AATAAA	-33	NA	56344740	56345728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56344700_56345700
transcript_138823.known	chr9	+	1782	3	FSM	ENSMUSG00000032329.5	ENSMUST00000214869.2	1782	3	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	18.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATCAAAGAGAAAAAAAA	NA	False	NA	NA	False	TATAAA	-13	NA	56326113	56383401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56326216_56374641_56374735_56381814
transcript_138825.known	chr9	-	3627	7	FSM	ENSMUSG00000049556.6	ENSMUST00000210032.2	3627	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.34370962471642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTGACTGCTCTCA	NA	False	NA	-16	True	NA	NA	NA	56703422	56525758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_56528600_56560883_56561117_56581706_56581794_56592403_56592566_56631584_56631630_56682822_56682933_56703273
transcript_138827.known	chr9	-	2782	2	FSM	ENSMUSG00000049556.6	ENSMUST00000114256.2	2782	2	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTTTGACGTCCTGATG	6223	False	NA	NA	False	AATAAA	-37	NA	56542912	56526371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_56528600_56542358
transcript_138828.known	chr9	-	4571	2	FSM	ENSMUSG00000032733.7	ENSMUST00000050916.7	4571	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGCACAGCTTCTTCTT	NA	False	NA	NA	False	GATAAA	-24	NA	56835655	56824476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_56825989_56832596
transcript_138829.known	chr9	+	924	1	FSM	ENSMUSG00000032288.10	ENSMUST00000034827.10	924	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTTGTCTGGTCGTTCT	NA	False	NA	18	True	AATAAA	-27	NA	56844758	56845682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56844800_56845700
transcript_138830.known	chr9	+	1391	9	FSM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_1	20.9105236663265	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTGTGGTTATTCGG	NA	False	NA	8	True	AATATA	-19	NA	56858161	56890490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56858238_56864297_56864461_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302_56885381_56888128_56888210_56889945
transcript_138834.known	chr9	+	4101	13	FSM	ENSMUSG00000032290.8	ENSMUST00000034832.8	4101	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	5.9207732227772	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTTTAGTTTCATCAAT	NA	False	NA	NA	False	TATAAA	-18	NA	56902206	56970091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56902941_56927187_56927332_56929491_56929582_56930242_56930368_56934659_56934766_56940389_56940501_56943766_56944096_56951658_56951753_56955474_56955542_56963997_56964077_56964994_56965146_56967137_56967346_56968228
transcript_138837.known	chr9	-	1241	3	FSM	ENSMUSG00000074284.7	ENSMUST00000128125.2	1241	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACAGACTGAAACAGGATC	NA	False	NA	NA	False	NA	NA	NA	56979091	56963913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_56964423_56964552_56965086_56978892
transcript_13884.known	chr10	-	3145	12	FSM	ENSMUSG00000020184.16	ENSMUST00000105263.9	3145	12	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_9	142.979973168527	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTCAGTGATTTTG	NA	False	NA	1	True	AATAAA	-41	NA	117546663	117524779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545558_117545690_117545850_117545934_117546456
transcript_138841.nic	chr9	+	3425	27	NIC	ENSMUSG00000032295.16	novel	3820	26	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_6	65.9648911460129	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTATAATGGTGCCTTGC	NA	False	NA	14	True	AATAAA	-15	NA	57037973	57049488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043486_57043610_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
transcript_138844.nic	chr9	+	3218	26	NIC	ENSMUSG00000032295.16	novel	3820	26	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	54.0613873295904	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTATAATGGTGCCTTGC	NA	False	NA	14	True	AATAAA	-15	NA	57038034	57049488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_57038174_57038442_57038543_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
transcript_138849.known	chr9	+	3820	26	FSM	ENSMUSG00000032295.16	ENSMUST00000160147.8	3820	26	0	0	0	0	multi-exon	FALSE	canonical	2	160	junction_17	33.744593641056	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATGCAGCCAGCCTTTC	NA	False	NA	NA	False	ATTAAA	-16	NA	57037973	57050006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
transcript_13885.known	chr10	-	3099	12	FSM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	63.7658423031336	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTCAGTGATTTTG	NA	False	NA	1	True	AATAAA	-41	NA	117546663	117524779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
transcript_13886.nnic	chr10	-	3566	5	NNC	ENSMUSG00000060181.7	novel	3489	5	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	30.0613955098562	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGGCTGATAAGCAGTT	NA	False	NA	NA	False	AATAAA	-19	NA	117582338	117569583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_117572139_117576416_117576500_117576657_117576817_117580632_117580753_117581689
transcript_138876.known	chr9	+	5206	22	FSM	ENSMUSG00000042557.15	ENSMUST00000168678.8	5206	22	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	78.0412705515297	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATAAGTCCCTTGTCC	NA	False	NA	NA	False	AATAAA	-22	NA	56983659	57035648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56983915_56988378_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
transcript_13888.known	chr10	-	3489	5	FSM	ENSMUSG00000060181.7	ENSMUST00000079041.7	3489	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	6.41774882649672	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGGCTGATAAGCAGTT	NA	False	NA	NA	False	AATAAA	-19	NA	117582270	117569583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117572139_117576416_117576500_117576657_117576817_117580789_117580901_117581689
transcript_138886.known	chr9	+	5086	21	FSM	ENSMUSG00000042557.15	ENSMUST00000168177.8	5086	21	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_18	80.3800970390059	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAAGTCCCTTGTCCTC	NA	False	NA	NA	False	AATAAA	-24	NA	56983682	57035650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56983915_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025456_57026376_57026472_57032452_57032661_57034431
transcript_138910.known	chr9	+	545	5	FSM	ENSMUSG00000032295.16	ENSMUST00000161393.8	545	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	114.614571499439	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTAGAACTCACTATGTA	NA	False	NA	NA	False	NA	NA	NA	57037973	57041439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57038174_57038442_57038570_57038815_57038940_57040805_57040877_57041416
transcript_138912.known	chr9	+	3215	26	FSM	ENSMUSG00000032295.16	ENSMUST00000034836.16	3215	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	55.7568148301174	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTATAATGGTGCCTTG	NA	False	NA	13	True	AATAAA	-14	NA	57038053	57049487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046137_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
transcript_138913.known	chr9	+	4845	20	FSM	ENSMUSG00000042557.15	ENSMUST00000049169.6	4845	20	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_9	35.0166561080031	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAAGTCCCTTGTCCTC	NA	False	NA	NA	False	AATAAA	-24	NA	56993864	57035650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
transcript_138923.known	chr9	-	1941	7	FSM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	0	0	0	0	multi-exon	FALSE	canonical	3	898	junction_5	106.241470245851	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	6331	False	NA	0	True	AATAAA	-19	NA	57065561	57062318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350
transcript_138924.known	chr9	-	858	8	FSM	ENSMUSG00000032299.11	ENSMUST00000065358.9	858	8	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_7	157.218553197095	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATGGGTCTTGCTTGC	6277	False	NA	-4	True	AATAAA	-15	NA	57065615	57062322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
transcript_138927.known	chr9	-	4152	3	FSM	ENSMUSG00000032300.8	ENSMUST00000034846.7	4152	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	39.5	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGATCTAGCTTTGTAC	NA	False	NA	-7	True	ATTAAA	-21	NA	57169895	57160399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57161613_57163668_57166424_57169711
transcript_13893.known	chr10	-	3098	28	FSM	ENSMUSG00000052798.14	ENSMUST00000167943.8	3098	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_26	174.04731866881	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATGAGAGTTTTCTCTT	NA	False	NA	-7	True	AATAAA	-26	NA	117628603	117586528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625960_117626371_117626464_117628508
transcript_138943.known	chr9	-	2744	7	FSM	ENSMUSG00000063849.7	ENSMUST00000085709.6	2744	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	42.49607825043	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTGAAACCTGTGAGT	NA	False	NA	NA	False	AATAAA	-20	NA	57347379	57319935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
transcript_138948.known	chr9	-	1665	7	FSM	ENSMUSG00000063849.7	ENSMUST00000216365.2	1665	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	15.2059929706094	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347390	57321243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
transcript_138957.nnic	chr9	-	1429	5	NIC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_2	57.2996509587973	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347379	57321243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_57322010_57322368_57322756_57342185_57342369_57344699_57344766_57347352
transcript_138968.known	chr9	-	1025	7	FSM	ENSMUSG00000040722.8	ENSMUST00000214256.2	1025	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	45.7262385167301	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGGGGGCCAGTGGGAC	NA	False	NA	NA	False	NA	NA	NA	57375343	57350928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375098
transcript_138969.known	chr9	-	3225	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	41.0680329859288	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375341	57348609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
transcript_138977.nic	chr9	-	3243	6	NIC	ENSMUSG00000040722.8	novel	3225	7	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_5	39.9669863762581	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375399	57348609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375098
transcript_138978.known	chr9	-	675	6	FSM	ENSMUSG00000040722.8	ENSMUST00000215734.2	675	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	25.4715527598927	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACTACACGTACTCCAAT	NA	False	NA	NA	False	NA	NA	NA	57375320	57350981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375215
transcript_138986.known	chr9	+	594	1	FSM	ENSMUSG00000111380.2	ENSMUST00000214169.2	594	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGATTGCACCTCGTT	NA	False	NA	NA	False	AAGAAA	-34	NA	57390258	57390852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57390300_57390900
transcript_138987.known	chr9	+	1423	1	FSM	ENSMUSG00000062309.9	ENSMUST00000080514.9	1423	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	449	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCTTCAGTTTTGTTC	NA	False	NA	12	True	AATAAA	-17	NA	57411308	57412731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57411300_57412700
transcript_138988.known	chr9	+	645	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	0	0	0	0	multi-exon	FALSE	canonical	3	7868	junction_4	746.021908190369	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGTCTTGTGATGTTGT	377	False	NA	22	True	AATAAA	-22	NA	57428561	57439709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
transcript_138990.known	chr9	+	3017	5	FSM	ENSMUSG00000032305.16	ENSMUST00000114200.10	3017	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	22.8582589013249	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGTACTGTGCTGCA	NA	False	NA	14	True	AATAAA	-14	NA	57444845	57450467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57446528_57446578_57447937
transcript_138994.known	chr9	+	3001	4	FSM	ENSMUSG00000032305.16	ENSMUST00000093833.6	3001	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	8.73053390247253	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGAGCTGTACTGTGCTG	NA	False	NA	12	True	AATAAA	-12	NA	57444810	57450465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57447937
transcript_139.known	SIRV5	+	2085	17	FSM	SIRV5A	SIRV508	2085	17	0	0	0	0	multi-exon	FALSE	canonical	3	2297	junction_10	2773.74385702339	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1008	10991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
transcript_139003.known	chr9	-	1780	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	8951	False	NA	-8	True	ATTAAA	-30	NA	57460046	57451538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
transcript_139006.nnic	chr9	-	1629	7	NIC	ENSMUSG00000032306.15	novel	1780	8	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	97.3077877436105	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	8928	False	NA	-8	True	ATTAAA	-30	NA	57460069	57451538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_57452222_57452477_57452687_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
transcript_139014.known	chr9	+	2340	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	0	0	0	0	multi-exon	TRUE	canonical	3	243	junction_4	15.3927742788621	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGGCCCTGATGTCAAT	NA	False	NA	13	True	AATAAA	-15	NA	57468225	57496078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
transcript_139020.known	chr9	+	2826	16	FSM	ENSMUSG00000032308.10	ENSMUST00000053230.7	2826	16	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	6.816320284598	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATTTCTTCTTGCCTTGG	NA	False	NA	33	True	ATTAAA	-17	NA	57496734	57503516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57496970_57497606_57497748_57497943_57498065_57498496_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225
transcript_139034.known	chr9	-	2390	15	FSM	ENSMUSG00000032312.8	ENSMUST00000215396.2	2390	15	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_13	47.878460071054	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGAATCTTATTTTTCCT	NA	False	NA	NA	False	AAGAAA	-30	NA	57560914	57534195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57541277_57541329_57559114_57559276_57560559
transcript_139043.nic	chr9	-	2850	14	NIC	ENSMUSG00000032312.8	novel	2749	13	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_13	41.3604447574315	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	-25	True	AATAAA	-23	NA	57552986	57533928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57541277_57541329_57552277
transcript_139048.nnic	chr9	-	2460	14	NIC	ENSMUSG00000032312.8	novel	2390	15	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_13	43.0998565326625	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	-25	True	AATAAA	-23	NA	57560768	57533928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57559114_57559276_57560559
transcript_139058.known	chr9	-	2749	13	FSM	ENSMUSG00000032312.8	ENSMUST00000034863.8	2749	13	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_12	11.433381924095	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	-25	True	AATAAA	-23	NA	57552936	57533928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57552277
transcript_139068.known	chr9	-	2162	13	FSM	ENSMUSG00000032312.8	ENSMUST00000217314.2	2162	13	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_12	31.3823862487649	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGCCTCGGCGCTTCCT	NA	False	NA	-26	True	AATAAA	-22	NA	57541350	57533929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57541277
transcript_139069.known	chr9	+	2621	7	FSM	ENSMUSG00000032315.7	ENSMUST00000034865.6	2621	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.687184270936277	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGTGTGTAGAGAAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	57604895	57611107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57604983_57607359_57608211_57608957_57609085_57609171_57609262_57609354_57609479_57609628_57609716_57609852
transcript_139070.known	chr9	-	2496	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9068	False	NA	-9	True	AATAAA	-21	NA	57673143	57657991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
transcript_139075.known	chr9	-	2363	12	FSM	ENSMUSG00000032316.9	ENSMUST00000215233.2	2363	12	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_9	49.1934955049954	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	9814	False	NA	-11	True	AATAAA	-19	NA	57672397	57657993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
transcript_139076.known	chr9	-	3924	12	FSM	ENSMUSG00000032316.9	ENSMUST00000216095.2	3924	12	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_11	42.6560334546315	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCTTGTGGAAAGCCAAG	9825	False	NA	-11	True	AATAAA	-16	NA	57672386	57657906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57668324_57668998_57669151_57672356
transcript_139077.nic	chr9	-	2646	12	NIC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	-247	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	91.1213884772205	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	8821	False	NA	-9	True	AATAAA	-21	NA	57673390	57657991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
transcript_139084.known	chr9	-	4130	11	FSM	ENSMUSG00000032316.9	ENSMUST00000215109.2	4130	11	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_10	41.0098768591177	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCCCTGGTACCAGTGT	9807	False	NA	-12	True	AATAAA	-18	NA	57672404	57657994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57668324_57668998_57669151_57672356
transcript_13909.nic	chr10	-	2595	25	ISM	ENSMUSG00000052798.14	ENSMUST00000064848.7	3114	28	-116	7281	-116	-617	5prime_fragment	FALSE	canonical	3	716	junction_16	60.0553997711002	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGAGGTAAGTTAACTGTG	NA	False	NA	NA	False	AAGAAA	-1	NA	117628726	117593806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
transcript_1391.known	chr1	+	641	3	FSM	ENSMUSG00000041684.12	ENSMUST00000155917.8	641	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	12.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACTCACACTCGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	44158116	44165726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_44158356_44159333_44159435_44165425
transcript_139102.known	chr9	+	5708	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGACTCCAACTGATTCT	NA	False	NA	NA	False	GATAAA	-16	NA	57615822	57659782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
transcript_139104.known	chr9	+	4277	6	FSM	ENSMUSG00000038957.14	ENSMUST00000137245.8	4277	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	95.7613700820952	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTACAGTTGACAGGCCT	NA	False	NA	NA	False	NA	NA	NA	57615837	57658686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57615983_57620663_57620845_57634468_57634805_57647172_57647327_57651867_57652086_57655443
transcript_139115.known	chr9	-	4171	9	FSM	ENSMUSG00000004661.16	ENSMUST00000171444.8	4171	9	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_8	71.7791752529938	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCAGTATGGGATCCTT	NA	False	NA	-6	True	AATAAA	-17	NA	57743991	57697638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743758
transcript_139116.nic	chr9	-	4091	9	NIC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	-41	0	intron_retention	FALSE	canonical	3	208	junction_3	16.1303285769385	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCAGTATGGGATCCTT	NA	False	NA	-6	True	AATAAA	-17	NA	57744117	57697638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
transcript_139118.nic	chr9	-	4048	9	NIC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	-155	0	intron_retention	FALSE	canonical	3	208	junction_3	16.1303285769385	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	57744231	57697795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
transcript_139121.known	chr9	-	1969	8	FSM	ENSMUSG00000004661.16	ENSMUST00000098686.4	1969	8	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_2	15.8603600340019	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCTTTTTCTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	57744076	57701969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
transcript_139126.nnic	chr9	-	2928	6	NNC	ENSMUSG00000004661.16	novel	3785	8	NA	NA	-56	0	intron_retention	FALSE	non_canonical	0	0	junction_4	95.0347304936464	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	57744132	57697795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57703913_57741431_57741516_57743964
transcript_139133.nic	chr9	+	1482	12	NIC	ENSMUSG00000055720.11	novel	1364	11	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	84.997131696865	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818259	57837251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_57818343_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_139135.nnic	chr9	+	1424	12	NIC	ENSMUSG00000055720.11	novel	1319	11	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	95.5400482857649	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818265	57837251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_57818291_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_139137.known	chr9	+	1364	11	FSM	ENSMUSG00000055720.11	ENSMUST00000163329.2	1364	11	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	59.3140792729686	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57818343_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_139139.known	chr9	+	1426	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	88.2161549830869	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCGTGTCCAGTGCT	NA	False	NA	14	True	AATATA	-15	NA	57818316	57837249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57818455_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_139141.known	chr9	+	1319	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216925.2	1319	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	82.3315856764583	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818261	57837251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57818291_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_139142.known	chr9	+	3297	14	FSM	ENSMUSG00000038264.9	ENSMUST00000043059.9	3297	14	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	2.43495258328376	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTGTGCCCTGTCT	NA	False	NA	11	True	AATAAA	-16	NA	57847395	57870148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57847612_57860818_57860962_57861452_57861495_57861807_57861901_57862106_57862195_57862342_57862454_57862985_57863126_57863623_57863809_57864591_57864701_57864789_57864989_57867537_57867666_57867841_57867997_57868139_57868202_57868522
transcript_139144.known	chr9	+	2120	9	FSM	ENSMUSG00000032323.14	ENSMUST00000034874.14	2120	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	1.85404962177392	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTTTGTATCTGTCAGAC	NA	False	NA	NA	False	AATAAA	-17	NA	57921953	57934306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57922582_57923556_57923713_57925476_57925677_57926575_57926780_57927991_57928150_57932360_57932528_57932810_57932890_57933367_57933566_57933976
transcript_139145.known	chr9	+	2169	2	FSM	ENSMUSG00000097604.2	ENSMUST00000181289.2	2169	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATGCCA	NA	False	NA	NA	False	NA	NA	NA	57905323	57914734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_57905602_57912843
transcript_139147.nic	chr9	+	2723	18	ISM	ENSMUSG00000032327.15	ENSMUST00000167479.8	2871	19	389	0	244	0	3prime_fragment	FALSE	canonical	1	1	junction_1	1.92416790985837	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGTCCGTAAAGCTAAT	NA	False	NA	NA	False	NA	NA	NA	58042336	58061279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_58042486_58046262_58046330_58046638_58046725_58047696_58047837_58048141_58048166_58048338_58048506_58050197_58050321_58052743_58052812_58052995_58053076_58053280_58053343_58054744_58054908_58056462_58056539_58057360_58057495_58058443_58058562_58058645_58058748_58059161_58059326_58059727_58059884_58060435
transcript_139154.known	chr9	+	2725	19	FSM	ENSMUSG00000032327.15	ENSMUST00000085677.9	2725	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.0764701767812	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCCTCCTTCCTAGAGGA	9374	False	NA	NA	False	AATAAA	-16	NA	58036370	58061238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58036434_58042356_58042486_58046262_58046330_58046638_58046725_58047696_58047837_58048141_58048166_58048338_58048506_58050197_58050321_58052743_58052812_58052995_58053076_58053280_58053343_58054744_58054908_58056462_58056539_58057360_58057495_58058443_58058562_58058645_58058748_58059161_58059326_58059727_58059884_58060435
transcript_139156.known	chr9	-	1045	4	FSM	ENSMUSG00000051243.15	ENSMUST00000216297.2	1045	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACAACCGGCTGCGTAC	9299	False	NA	NA	False	NA	NA	NA	58109526	58106796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58107267_58107554_58107745_58108562_58108656_58109234
transcript_139157.nic	chr9	-	4140	4	NIC	ENSMUSG00000051243.15	novel	4303	4	NA	NA	-70	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1.24721912892465	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGGTGAGATTTTTGGGG	7153	False	NA	0	True	AATAAA	-19	NA	58111672	58103580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_58107267_58107554_58107745_58108562_58108656_58111501
transcript_139159.known	chr9	-	875	3	FSM	ENSMUSG00000051243.15	ENSMUST00000214647.2	875	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTGGCTGCAGGCCTG	9743	False	NA	NA	False	NA	NA	NA	58109082	58106694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58107267_58108562_58108656_58108872
transcript_139160.nnic	chr9	-	3862	3	NNC	ENSMUSG00000051243.15	novel	4109	3	NA	NA	189	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGACTCGGTGAGATTTTT	9545	False	NA	-4	True	AATAAA	-15	NA	58109280	58103584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_58107267_58108562_58108656_58109193
transcript_139161.known	chr9	-	4109	3	FSM	ENSMUSG00000051243.15	ENSMUST00000215950.2	4109	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	4	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGACTCGGTGAGATTTTT	9257	False	NA	-4	True	AATAAA	-15	NA	58109568	58103584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58107267_58108562_58108656_58109234
transcript_139163.known	chr9	-	603	3	FSM	ENSMUSG00000051243.15	ENSMUST00000214649.2	603	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	4	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGATCGCTGCCCCGGG	7223	False	NA	NA	False	AATGAA	-10	NA	58111602	58106857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58107267_58108562_58108656_58111501
transcript_139165.known	chr9	-	4123	2	FSM	ENSMUSG00000051243.15	ENSMUST00000163200.3	4123	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTGAGATTTTTGGGGT	9827	False	NA	1	True	AATAAA	-20	NA	58108998	58103579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58107267_58108562
transcript_139173.nnic	chr9	-	3106	11	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	-25	1	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	112.525063874676	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTCTGTAATTTTGC	2126	False	NA	-12	True	NA	NA	NA	58157094	58125823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_58126012_58126793_58126953_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_139184.nnic	chr9	-	2962	10	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	123.069989120915	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTCTGTAATTTTGC	2132	False	NA	-12	True	NA	NA	NA	58157088	58125823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_58126012_58126793_58126953_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_139192.known	chr9	-	4413	9	FSM	ENSMUSG00000036986.17	ENSMUST00000135310.8	4413	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	114.3314807916	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCCTAACATTCTGATT	2204	False	NA	-11	True	AGTAAA	-13	NA	58157016	58125368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_139223.known	chr9	-	4206	8	FSM	ENSMUSG00000036986.17	ENSMUST00000126690.8	4206	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	129.417848814747	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACCCTAACATTCTGAT	2272	False	NA	-12	True	AGTAAA	-12	NA	58156948	58125369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_13923.known	chr10	-	1233	9	FSM	ENSMUSG00000052798.14	ENSMUST00000218810.2	1233	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_2	29.4522919311893	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGGTCTTTCTTATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	117628603	117613155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
transcript_139243.known	chr9	-	2652	8	FSM	ENSMUSG00000036986.17	ENSMUST00000153820.8	2652	8	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	51.5692520316326	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAACCCA	2151	False	NA	5	True	NA	NA	NA	58157069	58128332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_139281.nic	chr9	+	2151	8	NIC	ENSMUSG00000032333.7	novel	2236	8	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	150.498220207796	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160437	58169803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_58160561_58162216_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_139283.known	chr9	+	2236	8	FSM	ENSMUSG00000032333.7	ENSMUST00000216877.2	2236	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	134.059079269902	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160474	58169803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58160683_58162216_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_139284.nnic	chr9	+	3302	8	NNC	ENSMUSG00000032333.7	novel	2236	8	NA	NA	-6	1554	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	132.748803753402	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTTTTGTTTTTTTT	NA	False	NA	18	True	NA	NA	NA	58160440	58171357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928_58170493_58170734
transcript_139285.nic	chr9	+	1871	7	NIC	ENSMUSG00000032333.7	novel	1984	7	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	122.45498038962	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160437	58169803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_58160561_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_139288.known	chr9	+	1984	7	FSM	ENSMUSG00000032333.7	ENSMUST00000034883.7	1984	7	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	85.7729561108861	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160446	58169803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_139291.known	chr9	-	3297	7	FSM	ENSMUSG00000032334.11	ENSMUST00000061799.10	3297	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_6	4.22952584681651	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCAAAGCTACTGTCA	9357	False	NA	NA	False	NA	NA	NA	58220469	58195020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58196201_58198037_58198154_58199851_58199948_58200855_58201013_58201641_58201780_58204903_58205013_58218968
transcript_139295.known	chr9	+	843	3	FSM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGGCTGATACTTGCT	NA	False	NA	16	True	NA	NA	NA	58362404	58376918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58362640_58374083_58374201_58376427
transcript_139296.known	chr9	+	2139	3	FSM	ENSMUSG00000066607.6	ENSMUST00000085658.5	2139	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAACACAGTCATAATA	NA	False	NA	NA	False	NA	NA	NA	58395885	58407025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58396523_58396951_58397676_58406247
transcript_139297.known	chr9	+	1095	2	FSM	ENSMUSG00000066607.6	ENSMUST00000217624.2	1095	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCTATGTGCACATGGCC	NA	False	NA	NA	False	AGTAAA	-26	NA	58396244	58397768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58396523_58396951
transcript_13930.known	chr10	-	2724	8	FSM	ENSMUSG00000052681.9	ENSMUST00000064667.9	2724	8	0	0	0	0	multi-exon	FALSE	canonical	3	789	junction_2	110.417205107146	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACGGTCGTACTCGTTA	8605	False	NA	-10	True	ATTAAA	-12	NA	117681940	117649775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_117651686_117653248_117653366_117654370_117654515_117656366_117656508_117657494_117657552_117658705_117658775_117660498_117660580_117681735
transcript_139304.known	chr9	-	3603	8	FSM	ENSMUSG00000035914.12	ENSMUST00000165365.3	3603	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	14.4716471567189	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGGCCTGTGATGCCT	102	False	NA	-3	True	AATAAA	-19	NA	58462720	58431580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58433645_58434801_58434838_58435734_58435777_58437878_58438014_58442738_58443036_58444551_58444891_58447949_58448224_58462304
transcript_139307.known	chr9	+	1031	1	FSM	ENSMUSG00000103486.2	ENSMUST00000193528.2	1031	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	6911	False	NA	NA	False	NA	NA	NA	58462081	58463112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58462100_58463100
transcript_139308.known	chr9	-	3186	7	FSM	ENSMUSG00000035914.12	ENSMUST00000039788.11	3186	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	15.2278983740006	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTCTGGCCTGTGATGC	6607	False	NA	-5	True	AATAAA	-17	NA	58448224	58431582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58433645_58434801_58434838_58435734_58435777_58437878_58438014_58442738_58443036_58444551_58444891_58447949
transcript_139309.known	chr9	+	841	8	FSM	ENSMUSG00000032336.18	ENSMUST00000176896.8	841	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	128.573492046933	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCATGCCTTATTTAG	51	False	NA	NA	False	NA	NA	NA	58489723	58559245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58550968_58557779_58557802_58558540_58558616_58559141
transcript_139311.known	chr9	+	2024	8	FSM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	36.1815151813233	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	537	False	NA	NA	False	AATAAA	-16	NA	58489574	58560161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
transcript_139314.known	chr9	-	883	6	FSM	ENSMUSG00000074269.11	ENSMUST00000098674.6	883	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	244.73054570282	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACAGGTGAATCCACT	9050	False	NA	17	True	AATAAA	-40	NA	58648842	58560138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
transcript_139320.known	chr9	+	429	4	FSM	ENSMUSG00000032336.18	ENSMUST00000177380.8	429	4	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_1	35.6931365951495	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTGGCCATAAACGAAGT	619	False	NA	NA	False	NA	NA	NA	58489656	58547963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951
transcript_139322.known	chr9	+	6118	8	FSM	ENSMUSG00000032338.10	ENSMUST00000034889.10	6118	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.728431359084683	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGCCTTACTTGGGGGGG	NA	False	NA	NA	False	AATAAA	-16	NA	58730694	58770458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_58731580_58751160_58751585_58760665_58760828_58762807_58763027_58764999_58765147_58765256_58765498_58766311_58766477_58766583
transcript_139324.known	chr9	-	5414	28	FSM	ENSMUSG00000032340.9	ENSMUST00000214547.2	5414	28	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_21	17.5900582969936	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAACATTGAAAAGACTT	NA	False	NA	-16	True	AATGAA	-1	NA	58943708	58783837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838459_58863241_58863363_58865180_58865336_58885907_58886045_58889358_58889513_58892883_58893160_58897473_58897792_58943248
transcript_139326.nic	chr9	-	5574	28	NIC	ENSMUSG00000032340.9	novel	5414	28	NA	NA	-204	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_21	18.8438096795025	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAACATTGAAAAGACTT	NA	False	NA	-16	True	AATGAA	-1	NA	58943928	58783837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838399_58863241_58863363_58865180_58865336_58885907_58886045_58889358_58889513_58892883_58893160_58897473_58897792_58943248
transcript_139333.known	chr9	-	3639	15	FSM	ENSMUSG00000032340.9	ENSMUST00000217545.2	3639	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_8	20.0799422716464	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAACAAAATAACTATCT	NA	False	NA	NA	False	AAAAAG	-2	NA	58943710	58819581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838459_58863241_58863363_58865180_58865336_58885907_58886045_58889358_58889513_58892883_58893160_58897473_58897792_58943248
transcript_139336.nic	chr9	-	2407	7	ISM	ENSMUSG00000032340.9	ENSMUST00000217545.2	3639	15	-218	43094	-204	-36781	5prime_fragment	FALSE	canonical	3	118	junction_6	6.77413381096719	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTAGAGATACATTTTC	NA	False	NA	NA	False	AATAAA	-2	NA	58943928	58862675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_58863363_58865180_58865336_58885907_58886045_58889358_58889513_58892883_58893160_58897473_58897792_58943248
transcript_139338.known	chr9	-	2518	16	FSM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_2	13.5581054068119	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATCACTGTCTGTCTT	NA	False	NA	-18	True	AATAAA	-2	NA	59260791	59229272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
transcript_139358.known	chr9	+	2484	7	FSM	ENSMUSG00000025236.12	ENSMUST00000217570.2	2484	7	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_6	121.65205391699	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTAAGTCTAATTGATTT	NA	False	NA	18	True	ATTAAA	-19	NA	59198840	59223482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59220322_59220520_59221035_59221135_59222013
transcript_139359.known	chr9	+	2464	7	FSM	ENSMUSG00000025236.12	ENSMUST00000026266.9	2464	7	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_6	118.522032644662	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCCTAAGTCTAATTGA	NA	False	NA	15	True	ATTAAA	-16	NA	59198854	59223479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59220322_59220520_59221035_59221135_59222016
transcript_139377.nnic	chr9	+	2352	6	NIC	ENSMUSG00000025236.12	novel	2484	7	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_4	227.97315631451	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTAAGTCTAATTGATTT	NA	False	NA	18	True	ATTAAA	-19	NA	59198775	59223482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59221035_59221135_59222013
transcript_139378.nnic	chr9	+	2346	6	NIC	ENSMUSG00000025236.12	novel	2464	7	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_4	226.796825374607	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCCTAAGTCTAATTGA	NA	False	NA	15	True	ATTAAA	-16	NA	59198775	59223479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59217632_59221035_59221135_59222016
transcript_139380.known	chr9	+	5148	6	FSM	ENSMUSG00000025236.12	ENSMUST00000214361.2	5148	6	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_5	128.284059804794	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAAGTCTAATTGATTTT	NA	False	NA	19	True	ATTAAA	-20	NA	59198865	59223483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59199150_59204808_59205035_59210771_59210835_59217510_59220520_59221035_59221135_59222016
transcript_139397.known	chr9	-	6971	14	FSM	ENSMUSG00000025234.12	ENSMUST00000171975.8	6971	14	0	0	0	0	multi-exon	TRUE	canonical	3	295	junction_6	43.7741649239926	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATTGTTAAACTGTGAC	NA	False	NA	NA	False	AATAAA	-17	NA	59393897	59295540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_59300662_59302160_59302274_59303633_59303895_59310650_59310709_59313007_59313139_59315158_59315231_59315657_59315701_59319707_59319815_59322052_59322120_59333405_59333462_59333896_59333990_59344053_59344199_59361684_59361753_59393261
transcript_139416.known	chr9	+	1996	14	FSM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	0	0	0	0	multi-exon	FALSE	canonical	3	1100	junction_8	84.5408762866438	1103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	32	True	AATAAA	-24	NA	59446822	59472392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
transcript_13943.known	chr10	+	2461	15	FSM	ENSMUSG00000020212.15	ENSMUST00000163238.9	2461	15	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	33.0859270903593	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTCACACACTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	117977763	118004286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117992738_117992769_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
transcript_13944.known	chr10	+	3074	14	FSM	ENSMUSG00000020212.15	ENSMUST00000020437.13	3074	14	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	15.3152281412244	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGATGCTTCTGTTTTC	NA	False	NA	11	True	ATTAAA	-14	NA	117977736	118004902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
transcript_139449.known	chr9	+	2765	12	FSM	ENSMUSG00000032297.12	ENSMUST00000034840.10	2765	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	0.953462589245592	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGCCTGCTTCTGTGA	NA	False	NA	NA	False	TATAAA	-18	NA	59485619	59514575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59485923_59489558_59489642_59497917_59497967_59509859_59509989_59510082_59510163_59510277_59510422_59510517_59510651_59510730_59510881_59511412_59511494_59511582_59511727_59512239_59512396_59513262
transcript_139452.nnic	chr9	+	2712	24	NNC	ENSMUSG00000025237.17	novel	2631	24	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	17.0956389048557	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59524518	59557550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59548990_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
transcript_139453.known	chr9	+	2631	24	FSM	ENSMUSG00000025237.17	ENSMUST00000050483.15	2631	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	16.9215916701203	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTGTGGACTGGATATG	NA	False	NA	13	True	AATAAA	-7	NA	59524568	59557552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59549023_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
transcript_139455.nnic	chr9	+	2772	24	NNC	ENSMUSG00000025237.17	novel	2709	24	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_19	15.1991194650933	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59524518	59557550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59548990_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
transcript_139456.known	chr9	+	2709	24	FSM	ENSMUSG00000025237.17	ENSMUST00000026267.16	2709	24	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_19	14.9962818328102	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATCACTGTGGTCTGAC	NA	False	NA	29	True	AATAAA	-23	NA	59524566	59557568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59549023_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
transcript_139458.known	chr9	+	2484	23	FSM	ENSMUSG00000025237.17	ENSMUST00000216351.2	2484	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	14.9016056597828	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59524643	59557550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
transcript_139459.nic	chr9	+	2669	23	NIC	ENSMUSG00000025237.17	novel	2484	23	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	12.3533546820621	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59524518	59557550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59556112_59556193_59556572_59556637_59556801_59556887_59557206
transcript_139463.nic	chr9	+	2491	23	NIC	ENSMUSG00000025237.17	novel	2709	24	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_18	15.9016216232161	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGCTGTGGACTGGATA	NA	False	NA	11	True	AATAAA	-5	NA	59524526	59557550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_59524692_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59549023_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
transcript_13948.known	chr10	+	2022	14	FSM	ENSMUSG00000020212.15	ENSMUST00000169817.3	2022	14	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	36.5594271833727	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTCATCTTATCTAGTG	NA	False	NA	NA	False	AAGAAA	-26	NA	117977849	118004068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117986693_117986862_117987906_117988002_117988079_117988180_117992738_117992769_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
transcript_139491.known	chr9	+	2432	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	0	0	0	0	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	40069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1664	False	NA	20	True	AATAAA	-20	NA	59563650	59586658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
transcript_139492.known	chr9	+	2113	8	FSM	ENSMUSG00000032294.18	ENSMUST00000214571.2	2113	8	0	0	0	0	multi-exon	FALSE	canonical	3	15664	junction_5	1465.84232245004	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACTGAAAGAAAAAAAAGC	1872	False	NA	NA	False	NA	NA	NA	59563858	59580242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203
transcript_139495.nnic	chr9	+	3306	14	NNC	ENSMUSG00000074259.11	novel	1368	11	NA	NA	0	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	13.6750106822541	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGGTGTAGAAGTTT	1636	False	NA	NA	False	AATAAA	-19	NA	59587426	59626156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_59587536_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621224_59621459_59621557_59623205_59623311_59623490_59625142_59625435_59625714_59625803
transcript_13951.known	chr10	+	2922	13	FSM	ENSMUSG00000020212.15	ENSMUST00000164077.9	2922	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_12	29.3295452099452	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGATGCTTCTGTTTTC	NA	False	NA	11	True	ATTAAA	-14	NA	117977828	118004902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118003955
transcript_139511.nnic	chr9	+	3432	13	NNC	ENSMUSG00000074259.11	novel	3705	12	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	14.0482798472506	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGGTGTAGAAGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	59615047	59626156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621224_59621459_59621557_59623205_59623311_59623490_59625142_59625435_59625714_59625803
transcript_139517.known	chr9	+	3705	12	FSM	ENSMUSG00000074259.11	ENSMUST00000128944.8	3705	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.421308199665	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTGGTGTAGAAGTTTA	NA	False	NA	NA	False	AATAAA	-20	NA	59614919	59626157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_59615043_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621224_59621459_59621557_59623205_59623311_59623490
transcript_139519.known	chr9	-	1559	3	FSM	ENSMUSG00000051705.14	ENSMUST00000216329.2	1559	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6440	False	NA	-22	True	AATAAA	-15	NA	59657910	59643752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_59645152_59657544_59657655_59657860
transcript_139520.known	chr9	-	3682	2	FSM	ENSMUSG00000051705.14	ENSMUST00000051039.5	3682	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTCTGTCTCCTCA	6418	False	NA	-4	True	AATAAA	-18	NA	59657932	59641541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_59645152_59657860
transcript_139522.known	chr9	-	1663	4	FSM	ENSMUSG00000051705.14	ENSMUST00000217093.2	1663	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	6.59966329107444	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6429	False	NA	-22	True	AATAAA	-15	NA	59657921	59643752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_59645152_59647222_59647316_59657544_59657655_59657860
transcript_139531.nnic	chr9	+	2877	15	NIC	ENSMUSG00000039585.16	novel	11985	42	NA	NA	-41	-42232	combination_of_known_splicesites	FALSE	canonical	3	26	junction_5	9.95705062470093	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGTAAGTTTGGTATA	514	False	NA	NA	False	AATGAA	-6	NA	59658137	59750415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_59658629_59686825_59687737_59690753_59690849_59694096_59694160_59695697_59695798_59709196_59709295_59711167_59711295_59716681_59716772_59719184_59719302_59722526_59722662_59728867_59728990_59731473_59731616_59734405_59734602_59739471_59739592_59750345
transcript_139539.known	chr9	-	2037	8	FSM	ENSMUSG00000032292.9	ENSMUST00000034831.3	2037	8	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_6	3.8438925848782	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGGCTCTCTGTTGAGA	NA	False	NA	55	True	NA	NA	NA	59857400	59850053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_59850803_59854244_59854351_59854595_59854837_59855645_59855804_59855885_59856108_59856207_59856312_59856464_59856592_59857070
transcript_139550.nnic	chr9	-	2981	18	NNC	ENSMUSG00000047766.16	novel	3017	17	NA	NA	-14	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	6.84479445072417	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTTGTATGGTT	3481	False	NA	NA	False	AATAAA	-21	NA	60595455	60494511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_60494549_60494598_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60587787_60587986_60592317_60592406_60594421_60594479_60595094
transcript_139552.known	chr9	-	3017	17	FSM	ENSMUSG00000047766.16	ENSMUST00000065603.12	3017	17	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_10	6.23372881989584	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTTGTATGGTT	3495	False	NA	NA	False	AATAAA	-21	NA	60595441	60494511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60587787_60587986_60592317_60592406_60594421_60594479_60595094
transcript_139555.known	chr9	-	2779	16	FSM	ENSMUSG00000047766.16	ENSMUST00000114034.9	2779	16	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_10	6.23965811029205	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTTGTATGGTT	3535	False	NA	NA	False	AATAAA	-21	NA	60595401	60494511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60592317_60592406_60594421_60594479_60595094
transcript_139564.nic	chr9	-	2141	9	ISM	ENSMUSG00000047766.16	ENSMUST00000053171.14	3086	10	-72	18057	-72	0	5prime_fragment	FALSE	canonical	3	10	junction_2	5.65132727772866	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTTGTATGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	60557156	60494511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762
transcript_139565.known	chr9	-	2784	17	FSM	ENSMUSG00000047766.16	ENSMUST00000166168.8	2784	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	7.03312475006664	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTCCAGTTTG	4119	False	NA	NA	False	AATAAA	-11	NA	60594817	60494521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60587787_60587986_60592317_60592406_60594421_60594479_60594693
transcript_139566.known	chr9	+	2440	3	FSM	ENSMUSG00000034839.6	ENSMUST00000038407.6	2440	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGGATTCTAGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	60620271	60646084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_60620689_60631429_60631641_60644272
transcript_139567.known	chr9	+	3824	20	FSM	ENSMUSG00000034485.11	ENSMUST00000217656.2	3824	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	42.6765195225613	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAATTTTACTTTTCTGA	NA	False	NA	17	True	AATAAA	-18	NA	60701906	60787641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761780_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60777313_60777822_60779566_60781314_60781468_60783643_60783710_60787455
transcript_139569.known	chr9	+	4428	19	FSM	ENSMUSG00000034485.11	ENSMUST00000050183.7	4428	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	35.7857134056402	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGAGATGAGTGTGT	NA	False	NA	28	True	AATAAA	-29	NA	60701829	60787652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761786_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60779566_60781314_60781468_60783643_60783710_60787455
transcript_139571.nnic	chr9	+	4448	18	NIC	ENSMUSG00000034485.11	novel	4417	19	NA	NA	-96	1	intron_retention	FALSE	canonical	3	7	junction_17	39.0627212796501	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATTTTACTTTTCTGAG	NA	False	NA	18	True	AATAAA	-19	NA	60701727	60787642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761780_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60779566_60781314_60781468_60787455
transcript_139575.nic	chr9	+	2632	16	ISM	ENSMUSG00000034485.11	ENSMUST00000214354.2	4417	19	-96	9552	-96	677	5prime_fragment	FALSE	canonical	3	92	junction_11	22.8712337518843	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTGAAAAAGCAACTGTC	NA	False	NA	NA	False	NA	NA	NA	60701727	60778089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761780_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856
transcript_139582.known	chr9	+	4299	20	FSM	ENSMUSG00000032280.17	ENSMUST00000162583.8	4299	20	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_6	39.4816132387409	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGGTTTGATTGTTGTGT	NA	False	NA	35	True	AATGAA	-35	NA	61280500	61325768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
transcript_139586.known	chr9	+	2304	20	FSM	ENSMUSG00000032280.17	ENSMUST00000159050.8	2304	20	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_12	47.5364854771947	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGACTCTAACAGGCCT	NA	False	NA	NA	False	NA	NA	NA	61280719	61323998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316699_61317217_61317403_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
transcript_139593.known	chr9	+	3523	20	FSM	ENSMUSG00000032280.17	ENSMUST00000160882.8	3523	20	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	53.7569682399317	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCTTTGATAAGATACCG	NA	False	NA	15	True	AATAAA	-16	NA	61280666	61325119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301995_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316699_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
transcript_139598.known	chr9	-	499	3	FSM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	0	0	0	0	multi-exon	FALSE	canonical	3	11557	junction_2	345.5	5004	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_61820804_61821169_61821245_61821638
transcript_139600.known	chr9	-	2349	1	FSM	ENSMUSG00000032254.11	ENSMUST00000215404.2	2349	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAAATCAGGCAAA	NA	False	NA	NA	False	NA	NA	NA	61854019	61851670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_61851700_61854000
transcript_139601.known	chr9	-	3398	23	FSM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	42.1913194628531	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854056	61824561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
transcript_139602.known	chr9	-	1829	16	FSM	ENSMUSG00000032254.11	ENSMUST00000214295.2	1829	16	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_9	74.9241394122526	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATCTCGGGACAGAAAT	NA	False	NA	NA	False	AATAAA	-39	NA	61854042	61832878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
transcript_139603.known	chr9	-	3566	8	FSM	ENSMUSG00000032278.12	ENSMUST00000034817.11	3566	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.96922995583236	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGGGAGTTCAGGAATGC	NA	False	NA	NA	False	ATTAAA	-21	NA	61934138	61861019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_61863570_61868810_61868953_61871009_61871107_61876062_61876190_61879907_61880114_61883353_61883482_61896274_61896421_61933968
transcript_139605.known	chr9	-	4850	5	FSM	ENSMUSG00000032252.15	ENSMUST00000185675.7	4850	5	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	11.5974135047432	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTGGATATTTCTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	62029892	61964529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_61968318_61975666_61975913_61977296_61977896_61995710_61995802_62029766
transcript_139607.known	chr9	-	1922	3	FSM	ENSMUSG00000032252.15	ENSMUST00000185510.2	1922	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	70	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGACATATGGTGTCTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	62029891	61987601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_61989308_61995710_61995802_62029766
transcript_139613.known	chr9	+	2113	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTTCCTTTGAGTCTT	NA	False	NA	25	True	AATAAA	-25	NA	62248610	62286094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
transcript_139616.known	chr9	+	835	7	FSM	ENSMUSG00000032249.15	ENSMUST00000138226.8	835	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.326954973336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTTTTCTGATTGTA	NA	False	NA	NA	False	NA	NA	NA	62248574	62284983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_62248634_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
transcript_139618.known	chr9	+	924	7	FSM	ENSMUSG00000032249.15	ENSMUST00000135395.8	924	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	197.739517210563	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCTCCTATTCCTGC	NA	False	NA	NA	False	NA	NA	NA	62249356	62284954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_62249534_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
transcript_139642.nnic	chr9	-	3295	12	NNC	ENSMUSG00000041729.16	novel	3610	12	NA	NA	12600	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_11	15.3332135580422	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTATCAAGCCATGTT	NA	False	NA	-7	True	AATAAA	-19	NA	62405180	62326773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_62328696_62333072_62333213_62333422_62333514_62333812_62333926_62335217_62335315_62336230_62336336_62336507_62336625_62338583_62338749_62339638_62339789_62361810_62361928_62396522_62396724_62405103
transcript_139645.known	chr9	-	3610	12	FSM	ENSMUSG00000041729.16	ENSMUST00000048043.12	3610	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_11	4.75342416814595	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTATCAAGCCATGTT	9358	False	NA	-7	True	AATAAA	-19	NA	62444326	62326773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_62328696_62333072_62333213_62333422_62333514_62333812_62333926_62335217_62335315_62336230_62336336_62336507_62336625_62338583_62338749_62339638_62339789_62361810_62361928_62396522_62396724_62443934
transcript_139648.nic	chr9	-	3583	11	ISM	ENSMUSG00000041729.16	ENSMUST00000048043.12	3610	12	88	4316	4	1775	5prime_fragment	FALSE	canonical	3	53	junction_10	4.47325384926901	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAATAAAGGAAAAAA	9446	False	NA	NA	False	NA	NA	NA	62444238	62331089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_62333213_62333422_62333514_62333812_62333926_62335217_62335315_62336230_62336336_62336507_62336625_62338583_62338749_62339638_62339789_62361810_62361928_62396522_62396724_62443934
transcript_139649.known	chr9	+	4969	30	FSM	ENSMUSG00000032243.9	ENSMUST00000034774.9	4969	30	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	0.724958484194091	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGCAAGGCTGCATTCTG	NA	False	NA	NA	False	TTTAAA	-32	NA	62585107	62691264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_62585279_62604165_62604278_62634887_62634989_62637992_62638085_62639363_62639479_62642550_62642679_62644650_62644800_62651207_62651353_62651763_62651930_62653187_62653259_62658786_62658932_62659525_62659675_62662453_62662595_62662851_62663056_62664886_62665018_62667569_62667737_62668812_62668956_62670088_62670200_62673041_62673128_62674877_62675086_62675808_62675908_62676528_62676606_62678626_62678717_62680241_62680333_62681358_62681473_62681579_62681667_62683894_62684006_62684135_62684232_62689217_62689332_62689909
transcript_139651.nnic	chr9	-	2532	3	NNC	ENSMUSG00000032244.10	novel	6785	2	NA	NA	-7	-4213	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	121	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAATAGAATTCTGTGTTT	NA	False	NA	NA	False	AGTAAA	-15	NA	62719223	62703315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_62705011_62718339_62718520_62718566
transcript_139652.known	chr9	-	6785	2	FSM	ENSMUSG00000032244.10	ENSMUST00000034775.10	6785	2	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGAAGTTTGTGTCTTTA	NA	False	NA	-5	True	AGTAAA	-18	NA	62719216	62699102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_62705011_62718339
transcript_139656.nic	chr9	+	2407	8	NIC	ENSMUSG00000032245.13	novel	2142	7	NA	NA	-158	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	23.492942926482	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCCGTGGCTGTTTCTAG	NA	False	NA	13	True	AATAAA	-21	NA	62745908	62759288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_62746237_62747766_62747874_62751851_62751967_62753235_62753335_62754247_62754437_62754866_62754923_62756390_62756514_62757898
transcript_139658.known	chr9	+	2142	7	FSM	ENSMUSG00000032245.13	ENSMUST00000034776.13	2142	7	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	5.87130498460285	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCCGTGGCTGTTTCTAG	NA	False	NA	13	True	AATAAA	-21	NA	62746066	62759288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_62746237_62751851_62751967_62753235_62753335_62754247_62754437_62754866_62754923_62756390_62756514_62757898
transcript_139660.nic	chr9	+	943	2	ISM	ENSMUSG00000032246.15	ENSMUST00000163820.3	699	4	12830	-1	12817	0	3prime_fragment	FALSE	canonical	3	97	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGTGGAATTGGTGT	5298	False	NA	3	True	AATAAA	-15	NA	62778232	62783197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_62778737_62782758
transcript_139662.nic	chr9	-	4593	14	NIC	ENSMUSG00000032405.11	novel	5564	14	NA	NA	-24	-1	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8180976391468	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTGTGTTCTGTAAAAT	NA	False	NA	-1	True	AATAAA	-16	NA	62888189	62785650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_62788546_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_139664.nic	chr9	-	2889	14	NIC	ENSMUSG00000032405.11	novel	5564	14	NA	NA	-24	-1586	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8180976391468	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAATAGTTATGTTTTT	NA	False	NA	-4	True	AATAAA	-26	NA	62888189	62787354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_62788546_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_139667.nic	chr9	-	2127	14	NIC	ENSMUSG00000032405.11	novel	5564	14	NA	NA	-24	2045	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8180976391468	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTTAGTTATTTTGGTT	NA	False	NA	NA	False	GATAAA	-18	NA	62888189	62788116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_62788546_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_139670.known	chr9	-	5564	14	FSM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	15.6049605221996	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGTGTTCTGTAAAATG	NA	False	NA	0	True	AATAAA	-17	NA	62888161	62785649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_62789544_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_139677.nic	chr9	-	1404	11	ISM	ENSMUSG00000032405.11	ENSMUST00000214830.2	2492	14	-24	9359	-24	-9359	5prime_fragment	FALSE	canonical	3	108	junction_8	10.5076162853427	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGAGGTCATTGACCTAAC	NA	False	NA	NA	False	AATAAA	-10	NA	62888189	62799520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_139678.nic	chr9	-	1129	9	ISM	ENSMUSG00000032405.11	ENSMUST00000214830.2	2492	14	-24	13027	-24	-13027	5prime_fragment	FALSE	canonical	3	108	junction_6	11.5589521583922	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAATGAGAAAAAACCAACA	NA	False	NA	NA	False	NA	NA	NA	62888189	62803188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_139687.known	chr9	-	2310	22	FSM	ENSMUSG00000058444.9	ENSMUST00000034920.11	2310	22	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_19	9.60607328677695	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTTTGTCTCAGCAAGT	NA	False	NA	-1	True	AATAAA	-18	NA	63285184	63071049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63265274_63265343_63279018_63279068_63284404
transcript_139690.nnic	chr9	-	2239	21	NIC	ENSMUSG00000058444.9	novel	2310	22	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_19	18.5973116336744	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTTTGTCTCAGCAAGT	NA	False	NA	-1	True	AATAAA	-18	NA	63285181	63071049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63279018_63279068_63284404
transcript_139704.known	chr9	-	595	2	FSM	ENSMUSG00000032403.9	ENSMUST00000168665.3	595	2	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTTCTAGAGTGTGT	NA	False	NA	-11	True	AATAAA	-15	NA	63306523	63301728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_63301958_63306157
transcript_139705.known	chr9	-	1771	1	FSM	ENSMUSG00000032403.9	ENSMUST00000185528.2	1771	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	63306528	63304757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_63304800_63306500
transcript_13971.known	chr10	+	690	4	FSM	ENSMUSG00000020212.15	ENSMUST00000218011.2	690	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	22.6274169979695	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCTCACCTGACTCGTG	NA	False	NA	NA	False	NA	NA	NA	117977828	117984044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885
transcript_139711.known	chr9	+	5294	10	FSM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_6	53.7134601610168	434	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTGGAGACATGAAAAT	9214	False	NA	NA	False	AATAAA	-17	NA	63509941	63551870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
transcript_13972.known	chr10	+	1318	3	FSM	ENSMUSG00000020212.15	ENSMUST00000219087.2	1318	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTTTGAGATGCATTAG	NA	False	NA	NA	False	NA	NA	NA	117977818	117983653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_117977868_117978754_117978870_117982499
transcript_139720.known	chr9	-	5090	9	FSM	ENSMUSG00000032402.13	ENSMUST00000034973.10	5090	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	5.14174095030078	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCCTGCTGCTGTCTCTG	2283	False	NA	-2	True	AATAAA	-40	NA	63665276	63554048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_63557668_63559762_63559908_63561967_63562106_63562832_63563046_63570946_63570998_63573429_63573505_63574756_63574889_63575010_63575205_63664753
transcript_139721.nnic	chr9	-	2945	5	NNC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	16.7779617355625	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTCTTACAAA	NA	False	NA	NA	False	AATAAA	-15	NA	63929399	63860357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_63861339_63914812_63914891_63919496_63919554_63927486_63928830_63928913
transcript_139727.known	chr9	-	2971	4	FSM	ENSMUSG00000036867.8	ENSMUST00000041029.6	2971	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	8.65383665716478	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTCTTACAAA	NA	False	NA	NA	False	AATAAA	-15	NA	63929341	63860357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_63861339_63914812_63914891_63919496_63919554_63927486
transcript_13973.known	chr10	-	6129	3	FSM	ENSMUSG00000028630.10	ENSMUST00000004281.10	6129	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	3.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCTCACCCCTTTTTCTA	NA	False	NA	-7	True	AATAAA	-19	NA	118705054	118691507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_118697059_118704054_118704204_118704625
transcript_139741.known	chr9	-	2957	19	FSM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_16	368.954800838434	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	0	True	ACTAAA	-20	NA	64080386	64044425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
transcript_139764.nic	chr9	-	1193	10	ISM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	-14	18044	-14	0	5prime_fragment	FALSE	canonical	3	273	junction_7	22.7058484879019	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAGATAAACAAAA	NA	False	NA	NA	False	AATAAA	-22	NA	64080400	64062469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
transcript_139776.known	chr9	+	1538	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	0	0	0	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	624	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGCTTTGTTCCACATG	NA	False	NA	16	True	AATAAA	-13	NA	64080656	64085948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
transcript_139777.known	chr9	+	1228	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	0	0	0	0	multi-exon	FALSE	canonical	3	413	junction_2	26	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACTGCCAGCAACCTCT	1628	False	NA	NA	False	NA	NA	NA	64086555	64090414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64086703_64087780_64087871_64089423
transcript_139782.known	chr9	-	2436	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	0	0	0	0	multi-exon	TRUE	canonical	3	469	junction_6	51.6454257412987	1118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTGTGGCACACCTT	NA	False	NA	-13	True	AATAAA	-38	NA	64160913	64093051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
transcript_139796.known	chr9	+	1211	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCAGGATTTGAGTTT	9569	False	NA	14	True	AATAAA	-14	NA	64188888	64212074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_1398.known	chr1	+	3907	15	FSM	ENSMUSG00000026048.17	ENSMUST00000027214.4	3907	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.0296622066399	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTACTATCCATATTGTTA	NA	False	NA	94	True	ATTAAA	-40	NA	44187006	44220420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218306_44218392_44219690
transcript_13980.known	chr10	-	7766	15	FSM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	0	0	0	0	multi-exon	FALSE	canonical	3	515	junction_9	90.891306470073	456	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATCCATGTTTTCCTTC	226	False	NA	-27	True	AATAAA	-24	NA	119075960	119035159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878_119045975_119046559_119048054_119048344_119048487_119049451_119049745_119051106_119051253_119052047_119052154_119052355_119052613_119053845_119053970_119055494_119055650_119063307_119063452_119075545
transcript_139802.nic	chr9	+	704	7	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	-40	-3626	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	676.374013069364	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAGAATTGAGAGAAATAA	9503	False	NA	NA	False	NA	NA	NA	64188822	64208448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323
transcript_139811.nnic	chr9	+	1199	7	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_2	991.22511177947	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCAGGATTTGAGTTT	9503	False	NA	14	True	AATAAA	-14	NA	64188822	64212074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_64188930_64195389_64195526_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_139817.known	chr9	+	400	5	FSM	ENSMUSG00000032397.8	ENSMUST00000213165.2	400	5	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_1	838.218646893518	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAGCTGCAATTTGAAG	9545	False	NA	NA	False	NA	NA	NA	64188864	64201347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291
transcript_139820.known	chr9	-	3605	17	FSM	ENSMUSG00000032396.18	ENSMUST00000068367.14	3605	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_16	6.60699203495812	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGGCTCAAATTGATTC	5056	False	NA	NA	False	NA	NA	NA	64248570	64214038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_64214631_64214711_64214887_64215561_64215708_64217448_64217628_64217723_64217879_64218727_64219262_64221215_64221309_64221834_64222083_64224969_64225132_64226364_64226535_64229683_64229864_64231903_64231983_64232989_64233167_64236714_64236851_64238068_64238198_64246760_64246915_64248274
transcript_139824.nic	chr9	-	2571	14	ISM	ENSMUSG00000032396.18	ENSMUST00000168844.9	3575	17	16	3485	16	-3230	5prime_fragment	FALSE	canonical	3	33	junction_13	6.27571632442189	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAGATTAAAGAAAATTTG	5103	False	NA	NA	False	AAGAAA	-2	NA	64248523	64217522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_64217628_64217723_64217879_64218727_64219262_64221215_64221309_64221834_64222083_64224969_64225132_64226364_64226535_64229683_64229864_64231903_64231983_64232989_64233167_64236714_64236851_64238068_64238198_64246760_64246915_64248274
transcript_139828.known	chr9	+	6680	25	FSM	ENSMUSG00000036466.18	ENSMUST00000068967.11	6680	25	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_22	6.84348838921594	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGCCTACTGTTGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	64292967	64616487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64604588_64604656_64605088_64605191_64607378_64607436_64613008
transcript_139830.known	chr9	+	6018	25	FSM	ENSMUSG00000036466.18	ENSMUST00000164113.8	6018	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_24	8.45812807632726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGCCTACTGTTGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	64292907	64616487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64604588_64604656_64605088_64605191_64607378_64607436_64613008_64613216_64613808
transcript_139836.known	chr9	-	2336	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	0	0	0	0	multi-exon	TRUE	canonical	3	899	junction_3	39.0160223497988	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGTGAGATTACATTCT	NA	False	NA	-2	True	AATAAA	-21	NA	64645040	64622580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
transcript_139841.known	chr9	-	508	4	FSM	ENSMUSG00000004771.13	ENSMUST00000171100.2	508	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	456.48244459368	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCGCCCACCACTGAGAA	NA	False	NA	NA	False	NA	NA	NA	64645012	64624184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64644865
transcript_139843.known	chr9	-	726	3	FSM	ENSMUSG00000004771.13	ENSMUST00000167569.8	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	492.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTAGAAATAAGCTATTG	NA	False	NA	98	True	NA	NA	NA	64645024	64623784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_64624271_64632783_64632865_64644865
transcript_139847.known	chr9	+	8645	34	FSM	ENSMUSG00000053641.10	ENSMUST00000038890.6	8645	34	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_22	5.48643874485172	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGATAATTATTATTTAT	NA	False	NA	3	True	AATAAA	-18	NA	64718621	64826949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64718869_64742567_64742635_64743235_64743364_64746094_64746427_64749721_64749972_64756407_64756478_64758493_64758664_64759697_64759940_64764948_64765016_64766580_64766640_64769184_64769330_64769608_64769785_64775043_64775145_64779109_64779329_64780275_64780422_64794138_64794273_64795767_64795904_64796201_64796409_64796497_64796627_64796871_64797014_64800567_64800685_64801679_64801812_64803615_64804713_64811431_64811622_64813282_64813378_64814119_64814296_64814384_64814520_64816782_64816982_64817212_64817468_64818946_64819065_64819168_64819196_64819635_64819799_64819957_64820023_64824240
transcript_139849.known	chr9	+	2820	13	FSM	ENSMUSG00000034263.14	ENSMUST00000170517.9	2820	13	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_1	33.6860505254029	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTAGGATTTTGACTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	64868186	64894260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64868221_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
transcript_139854.known	chr9	+	2837	13	FSM	ENSMUSG00000034263.14	ENSMUST00000037504.7	2837	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	58.8451357377991	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGACTCCTAAGAAGCAAT	NA	False	NA	NA	False	AATATA	-18	NA	64868218	64893990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64868540_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
transcript_139867.known	chr9	-	2709	11	FSM	ENSMUSG00000033629.7	ENSMUST00000036615.7	2709	11	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	24.7620677650313	481	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTGTGCTTAAACATCA	NA	False	NA	-1	True	ATTAAA	-23	NA	64928975	64894264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_64895812_64897598_64897731_64898255_64898363_64899538_64899652_64905476_64905605_64908262_64908374_64911538_64911591_64912889_64913055_64913842_64913917_64917755_64917799_64928738
transcript_139877.known	chr9	+	4808	21	FSM	ENSMUSG00000032393.16	ENSMUST00000034960.14	4808	21	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_17	12.9379287368574	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTATTTCCCCCATGAC	NA	False	NA	31	True	ATTAAA	-28	NA	64939695	64989933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_64939906_64942156_64942294_64944250_64944524_64949545_64949659_64950967_64951142_64952901_64953071_64958671_64958783_64960326_64960456_64961050_64961113_64961700_64961802_64962109_64962288_64963073_64963234_64967484_64967565_64970708_64970862_64971100_64971237_64973632_64973779_64981720_64981868_64983017_64983171_64985244_64985388_64985955_64986068_64988012
transcript_139888.nic	chr9	+	4451	10	ISM	ENSMUSG00000032816.16	ENSMUST00000213533.2	6220	20	26820	0	26771	0	3prime_fragment	TRUE	canonical	3	6	junction_3	2.94811092476036	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTGCTCTCTCTCTTT	2809	False	NA	4	True	AATAAA	-12	NA	65035587	65045222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_65035987_65036061_65036164_65037844_65038029_65038625_65038754_65038890_65039062_65039207_65039346_65040332_65040439_65040921_65041151_65041754_65041920_65042393
transcript_139893.nnic	chr9	+	2853	15	NNC	ENSMUSG00000032394.7	novel	3183	14	NA	NA	-106	-295	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.768614983332	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGATGAAAGAAGAGAGA	NA	False	NA	NA	False	TTTAAA	-29	NA	65048364	65092859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_65048496_65048659_65048836_65051537_65051844_65084676_65084822_65085147_65085279_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091054_65091194_65091314_65091523_65092415
transcript_139900.known	chr9	+	3183	14	FSM	ENSMUSG00000032394.7	ENSMUST00000217371.2	3183	14	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_11	14.1668000921899	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65048493	65093154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65048836_65051537_65051844_65084676_65084822_65085147_65085279_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091054_65091194_65091314_65091523_65092415
transcript_139903.known	chr9	+	3146	14	FSM	ENSMUSG00000032394.7	ENSMUST00000034961.6	3146	14	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_11	21.5941587543412	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65048470	65093154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65048836_65051537_65051844_65084676_65084822_65085147_65085279_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091114_65091194_65091314_65091523_65092415
transcript_139913.known	chr9	+	2482	7	FSM	ENSMUSG00000032392.12	ENSMUST00000069000.9	2482	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	17.0269394392142	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAAGTTGTCTGTGACTG	NA	False	NA	NA	False	AATAAA	-15	NA	65121971	65146500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65122146_65122630_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
transcript_139917.known	chr9	+	2518	6	FSM	ENSMUSG00000032392.12	ENSMUST00000213396.2	2518	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	11.7915223783869	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTGTGACTGTCTGCA	NA	False	NA	NA	False	AATAAA	-21	NA	65122426	65146506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
transcript_139920.known	chr9	+	2885	14	FSM	ENSMUSG00000015357.11	ENSMUST00000015501.11	2885	14	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_12	30.6779414999533	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAATTTGTTTTTTTTGT	6151	False	NA	NA	False	AATAAA	-31	NA	65201541	65237939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65219379_65219422_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
transcript_139924.known	chr9	+	2809	13	FSM	ENSMUSG00000015357.11	ENSMUST00000113824.8	2809	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_5	89.4905333292609	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAATTTGTTTTTTTTGTC	6186	False	NA	NA	False	AATAAA	-32	NA	65201576	65237940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
transcript_139933.known	chr9	+	1279	4	FSM	ENSMUSG00000015357.11	ENSMUST00000148632.2	1279	4	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_3	26.4491125665032	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAAAACAAAACT	6223	False	NA	NA	False	NA	NA	NA	65201613	65216512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749
transcript_13994.known	chr10	+	4520	24	FSM	ENSMUSG00000034813.20	ENSMUST00000147454.8	4520	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.635370862729	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCCATGCCACTTGCTT	NA	False	NA	NA	False	NA	NA	NA	119655302	119912421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_119655540_119733619_119733701_119765805_119765942_119767148_119767295_119774148_119774233_119778766_119778843_119780930_119781077_119811774_119811923_119814342_119814513_119821378_119821535_119822236_119822390_119835656_119835844_119836430_119836577_119846110_119846192_119853977_119854048_119855865_119856012_119871255_119871401_119874195_119874336_119874503_119874699_119885255_119885413_119885909_119886022_119890737_119890972_119908535_119908683_119911194
transcript_139941.known	chr9	+	2419	5	FSM	ENSMUSG00000041837.5	ENSMUST00000048184.4	2419	5	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_1	28.3846349280733	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGCCCCTGATTTATT	NA	False	NA	42	True	AATAAA	-25	NA	65253385	65266925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65254291_65261891_65262031_65263526_65263764_65263999_65264088_65265875
transcript_139945.nic	chr9	+	1254	3	ISM	ENSMUSG00000041837.5	ENSMUST00000215470.2	898	5	-593	1025	-43	-1025	5prime_fragment	FALSE	canonical	3	267	junction_1	4.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAGAAAAGAGAAAGAGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	65253342	65263693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_65254291_65261891_65262031_65263526
transcript_139946.known	chr9	+	846	4	FSM	ENSMUSG00000086228.4	ENSMUST00000239433.2	846	4	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	5.79271573232759	497	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCTGCAGAGGCAGGAGG	NA	False	NA	33	True	NA	NA	NA	65279127	65285331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080
transcript_139953.known	chr9	-	2969	1	FSM	ENSMUSG00000054978.4	ENSMUST00000068307.4	2969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGACTCTAGGCAAACAGT	NA	False	NA	NA	False	AATAAA	-19	NA	65298934	65295965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_65296000_65298900
transcript_139957.known	chr9	+	2042	9	FSM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGGCCTGCCCAGGG	NA	False	NA	NA	False	NA	NA	NA	65343063	65360336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
transcript_13996.known	chr10	-	4554	13	FSM	ENSMUSG00000020228.12	ENSMUST00000020449.12	4554	13	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	7.32006375199925	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCAGTCTGTGGTTTTCT	NA	False	NA	-3	True	NA	NA	NA	119948892	119919512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_119920879_119925312_119925781_119927513_119927658_119928388_119928594_119930131_119930192_119931005_119931097_119934086_119934242_119937302_119937445_119938674_119938850_119941063_119941943_119944790_119944961_119946737_119947134_119948589
transcript_139962.known	chr9	+	2563	8	FSM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_4	22.2545569743019	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTTGTATCCTTTGAAG	NA	False	NA	27	True	AATAAA	-28	NA	65343069	65359699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
transcript_139966.nic	chr9	+	961	4	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	-31	11695	-25	-6555	5prime_fragment	FALSE	canonical	3	143	junction_2	18.6607133363712	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATGAGAGAGATCAAGACT	NA	False	NA	NA	False	NA	NA	NA	65343038	65348004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627
transcript_139974.known	chr9	+	2680	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	0	0	0	0	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTAAGGGGTTTTATTC	7176	False	NA	NA	False	AATAAA	-16	NA	65368228	65395752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
transcript_139985.known	chr9	-	3273	6	FSM	ENSMUSG00000050721.10	ENSMUST00000068944.9	3273	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	5.23832034148352	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCTGGCCCAAGCCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	65487322	65461665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_65464362_65465900_65466000_65466701_65466807_65471165_65471286_65480261_65480412_65487219
transcript_139986.nic	chr9	+	3407	13	NIC	ENSMUSG00000041064.15	novel	3395	13	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	35.8817502360183	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	24	True	AATAAA	-14	NA	65494448	65503246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_65494581_65494893_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
transcript_139988.known	chr9	+	3309	13	FSM	ENSMUSG00000041064.15	ENSMUST00000131483.3	3309	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	37.6787406902088	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGCCTCCTGCCTGGTCT	NA	False	NA	27	True	AATAAA	-17	NA	65494502	65503249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65494534_65494893_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
transcript_139990.nic	chr9	+	3419	13	NIC	ENSMUSG00000041064.15	novel	3395	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	35.6872020322256	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	24	True	AATAAA	-14	NA	65494464	65503246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_65494581_65494865_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
transcript_139992.known	chr9	+	3395	13	FSM	ENSMUSG00000041064.15	ENSMUST00000134538.9	3395	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	37.6787406902088	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	24	True	AATAAA	-14	NA	65494441	65503246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65494534_65494865_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
transcript_139993.known	chr9	+	3725	12	FSM	ENSMUSG00000041064.15	ENSMUST00000154970.9	3725	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	37.3420641109475	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACTGTGCCTCCTGCCT	NA	False	NA	22	True	AATAAA	-12	NA	65494474	65503244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65498968_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
transcript_139994.known	chr9	+	3680	12	FSM	ENSMUSG00000041064.15	ENSMUST00000239405.2	3680	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	26.5476337835245	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACTGTGCCTCCTGCCT	NA	False	NA	22	True	AATAAA	-12	NA	65494486	65503244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
transcript_14.known	ERCC-00043	+	1007	1	FSM	ERCC-00043A	DQ516787	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	183	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	TATAAA	-12	NA	0	1007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00043_+_0_1000
transcript_140001.nnic	chr9	+	3595	11	NNC	ENSMUSG00000041064.15	novel	3395	13	NA	NA	-20	0	intron_retention	FALSE	canonical	0	0	junction_7	41.2087369376932	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	24	True	AATAAA	-14	NA	65494421	65503246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499122_65500568_65500632_65500738_65500885_65501668_65501861_65502062
transcript_140021.known	chr9	+	2450	4	FSM	ENSMUSG00000041064.15	ENSMUST00000152885.8	2450	4	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	7.34846922834953	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65494486	65497774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65495677_65496286_65496887_65496994_65497110_65497229
transcript_140040.known	chr9	+	1987	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_4	112.168059042616	1321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65537840	65567808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
transcript_140064.known	chr9	+	1843	6	FSM	ENSMUSG00000040652.17	ENSMUST00000153700.9	1843	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	155.7934530075	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	4604	False	NA	23	True	AATAAA	-17	NA	65583829	65597582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65584048_65593477_65593554_65593554_65593636_65595079_65595256_65596102_65596189_65596376
transcript_140066.nic	chr9	-	2587	5	ISM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	-163	11091	-163	-3612	5prime_fragment	FALSE	canonical	3	14	junction_2	1.29903810567666	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGACTCATCAAAGGAAC	NA	False	NA	NA	False	NA	NA	NA	65735009	65610763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_65611901_65613372_65613461_65638257_65638484_65701903_65702778_65734747
transcript_140069.nnic	chr9	+	947	5	NNC	ENSMUSG00000040204.7	novel	2188	4	NA	NA	-26	73350	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	367.570656473011	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCCCAACAGTAATTCC	NA	False	NA	NA	False	AAAACA	-8	NA	65797575	65883898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839_65809293_65883826
transcript_140070.known	chr9	+	2188	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAAAATCTCTTGTCAT	NA	False	NA	NA	False	ATTAAA	-16	NA	65797518	65810548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
transcript_140071.known	chr9	-	1999	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	0	0	0	0	multi-exon	TRUE	canonical	3	144	junction_4	28.3474229673332	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTAGGTCATTTTT	NA	False	NA	-8	True	TATAAA	-12	NA	65792338	65740437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
transcript_140078.known	chr9	+	7208	14	FSM	ENSMUSG00000032384.17	ENSMUST00000034949.10	7208	14	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	6.58040843321514	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGTTTCATTAGCTG	NA	False	NA	27	True	AATAAA	-28	NA	65816267	65952297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65816451_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
transcript_14008.nic	chr10	-	667	2	ISM	ENSMUSG00000020228.12	ENSMUST00000154501.2	3095	12	-143	26116	-21	-26116	5prime_fragment	FALSE	canonical	3	65	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTCTACACCAAGGGAGC	NA	False	NA	NA	False	GATAAA	-3	NA	119948913	119946790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_119947134_119948589
transcript_140085.known	chr9	-	2543	7	FSM	ENSMUSG00000039452.7	ENSMUST00000044711.7	2543	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.43241991988774	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGTCATTGTGTGGT	NA	False	NA	NA	False	AATAAA	-12	NA	65977001	65972457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_65974502_65974794_65974863_65975061_65975095_65975408_65975504_65975967_65976073_65976455_65976540_65976887
transcript_140088.known	chr9	+	892	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	0	0	0	0	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	1461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGGTGTGGGCTGTGT	1574	False	NA	16	True	AATAAA	-16	NA	65967512	65973905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
transcript_14009.known	chr10	-	3097	12	FSM	ENSMUSG00000020227.11	ENSMUST00000020448.11	3097	12	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	3.60440501847255	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTTTGTTAACTCAGAA	NA	False	NA	NA	False	ATTAAA	-17	NA	120037564	119977552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_119979097_119981550_119981716_119981802_119981866_119982335_119982535_120000997_120001117_120002309_120002425_120006222_120006288_120012135_120012288_120013972_120014028_120014600_120014705_120018430_120018614_120037231
transcript_140093.known	chr9	+	3305	4	FSM	ENSMUSG00000032383.8	ENSMUST00000213785.2	3305	4	0	0	0	0	multi-exon	FALSE	canonical	3	2090	junction_3	185.159990878759	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGGTGTGGGCTGTGT	1565	False	NA	16	True	AATAAA	-16	NA	65967503	65973905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65972954_65973576
transcript_140103.known	chr9	-	2073	15	FSM	ENSMUSG00000032382.15	ENSMUST00000034946.15	2073	15	0	0	0	0	multi-exon	FALSE	canonical	2	266	junction_13	37.3054135153468	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGGGCATGGTAGCA	NA	False	NA	-4	True	AATAAA	-20	NA	66032168	65995414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
transcript_140104.nic	chr9	-	1948	15	NIC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_14	103.740477802514	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGGGCATGGTAGCA	NA	False	NA	-4	True	AATAAA	-20	NA	66033879	65995414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66033724
transcript_140114.known	chr9	+	1240	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_3	21.6376408140999	735	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTCACCTTAGGTTTT	1383	False	NA	17	True	AATAAA	-18	NA	66033892	66046237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
transcript_140116.known	chr9	+	1772	12	FSM	ENSMUSG00000032380.10	ENSMUST00000034944.9	1772	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.90340353139478	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGGTGTTTTAGAGCT	4134	False	NA	NA	False	ATTAAA	-17	NA	66065504	66179524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_66065623_66072619_66072718_66127815_66128038_66138994_66139134_66153698_66153829_66157618_66157668_66158356_66158384_66161752_66161906_66162612_66162659_66175960_66176051_66176148_66176233_66178908
transcript_140121.known	chr9	-	5607	15	FSM	ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_11	15.624418356521	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCCACCAGTCCTGATC	NA	False	NA	NA	False	AATAAA	-19	NA	66500424	66421918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
transcript_140126.known	chr9	-	2797	14	FSM	ENSMUSG00000032376.13	ENSMUST00000098613.9	2797	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_8	36.8152271043594	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACACTAACTTGAATCCC	NA	False	NA	NA	False	NA	NA	NA	66500318	66424508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
transcript_140131.known	chr9	+	3716	11	FSM	ENSMUSG00000032373.16	ENSMUST00000071889.13	3716	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	5.86856030044848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGATTTTTTCCCCCCCT	NA	False	NA	NA	False	AATAAA	-17	NA	66620967	66674127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_66621216_66624841_66624863_66653751_66653932_66654857_66655004_66658211_66658308_66659224_66659289_66659568_66659727_66660976_66661104_66669684_66669715_66670528_66670617_66671569
transcript_140132.known	chr9	+	3639	10	FSM	ENSMUSG00000032373.16	ENSMUST00000085420.12	3639	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	4.2687494916219	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACTGATTTTTTCCCCC	NA	False	NA	NA	False	AATAAA	-14	NA	66621011	66674124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_66621216_66624841_66624863_66653751_66653932_66654857_66655004_66658211_66658308_66659224_66659289_66659568_66659727_66660976_66661104_66670528_66670617_66671569
transcript_140133.known	chr9	-	4910	6	FSM	ENSMUSG00000032375.16	ENSMUST00000034934.15	4910	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	4.70744091837593	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTGGGGGTTTGCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	66702772	66682483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66686663_66691799_66691928_66696927_66697051_66697879_66697951_66701351_66701523_66702534
transcript_140134.known	chr9	-	5205	6	FSM	ENSMUSG00000053040.14	ENSMUST00000169282.8	5205	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	3.03315017762062	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTGTGTGTGGAGGT	NA	False	NA	NA	False	ATTAAA	-14	NA	66742008	66722275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741767
transcript_140136.known	chr9	-	4733	8	FSM	ENSMUSG00000036943.10	ENSMUST00000041139.9	4733	8	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_5	12.9992150469455	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACTCTTAAGTGGATT	7751	False	NA	-1	True	AATAAA	-21	NA	66826969	66750945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66755094_66755879_66755931_66758615_66758682_66760208_66760299_66761949_66762028_66768118_66768180_66770704_66770766_66826791
transcript_140137.known	chr9	+	575	5	FSM	ENSMUSG00000036781.14	ENSMUST00000127896.8	575	5	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_3	5596.89320069626	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTCCTCCCTCTGCTTCT	NA	False	NA	32	True	AATAAA	-16	NA	66853372	66856796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855920_66856000_66856610
transcript_140138.known	chr9	+	499	4	FSM	ENSMUSG00000036781.14	ENSMUST00000040917.14	499	4	0	0	0	0	multi-exon	FALSE	canonical	3	10808	junction_3	618.277355956765	2641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTCCTCCCTCTGCTT	NA	False	NA	30	True	AATAAA	-14	NA	66853367	66856794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66856610
transcript_14014.known	chr10	+	904	7	FSM	ENSMUSG00000020225.11	ENSMUST00000020446.11	904	7	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_6	43.3628104870214	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTCTTCTATAATT	NA	False	NA	31	True	ATTAAA	-43	NA	120044654	120060822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_120044848_120051445_120051555_120053408_120053515_120056655_120056690_120057910_120058029_120059741_120059788_120060524
transcript_140141.known	chr9	+	452	5	FSM	ENSMUSG00000036781.14	ENSMUST00000147394.8	452	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	5638.10178051975	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTATTTTGGTGTCAGT	NA	False	NA	-14	True	TATAAA	-15	NA	66853447	66856750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855922_66856000_66856610
transcript_140142.known	chr9	-	2031	6	FSM	ENSMUSG00000032370.9	ENSMUST00000034929.7	2031	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	9.68710483064987	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGGCACTTTTCAGT	NA	False	NA	NA	False	AATAAA	-11	NA	66882766	66862674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66863483_66874960_66875127_66877863_66878219_66878457_66878649_66881999_66882067_66882322
transcript_140146.known	chr9	-	1208	10	FSM	ENSMUSG00000032366.16	ENSMUST00000113685.10	1208	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	231.53598765688	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66956495	66935173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_140147.known	chr9	-	1259	10	FSM	ENSMUSG00000032366.16	ENSMUST00000050905.16	1259	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	231.62890712794	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66956546	66935173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_140149.known	chr9	-	1898	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113707.9	1898	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	239.532846129711	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66956688	66929871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_140150.known	chr9	-	1742	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113697.8	1742	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	230.863460729497	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCACATTTAGGACATTTT	NA	False	NA	-25	True	AATAAA	-1	NA	66956557	66929896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_140152.known	chr9	-	887	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	167.222110903433	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGGCCAGGCACAGACT	NA	False	NA	-90	True	NA	NA	NA	66951015	66935329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_140153.nic	chr9	-	1232	9	NIC	ENSMUSG00000032366.16	novel	1208	10	NA	NA	-42	-8	combination_of_known_junctions	FALSE	canonical	3	173	junction_1	203.579683416592	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTGCTATTCTTTT	NA	False	NA	-16	True	AATAAA	-13	NA	66951286	66935255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_140160.known	chr9	-	1607	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_4	182.146722648058	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGTGGTCCTGTCGTC	NA	False	NA	-2	True	AATAAA	-24	NA	66951084	66929873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_140161.known	chr9	-	1714	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113696.8	1714	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	100.853500541273	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66951189	66929871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_140162.known	chr9	-	904	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113689.8	904	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	204.866407441433	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGGAGTTTTTACAATAT	NA	False	NA	NA	False	ATTAAA	-11	NA	66950991	66931607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66931848_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_140166.nic	chr9	-	2664	8	NIC	ENSMUSG00000032366.16	novel	1797	9	NA	NA	22	-8	intron_retention	FALSE	canonical	3	209	junction_4	194.584329339466	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTGCTATTCTTTT	NA	False	NA	-16	True	AATAAA	-13	NA	66951222	66935255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_140167.nic	chr9	-	2728	8	NIC	ENSMUSG00000032366.16	novel	887	9	NA	NA	-42	-8	intron_retention	FALSE	canonical	3	256	junction_1	130.784134343269	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTGCTATTCTTTT	NA	False	NA	-16	True	AATAAA	-13	NA	66951286	66935255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_14017.known	chr10	+	486	3	FSM	ENSMUSG00000020225.11	ENSMUST00000134797.8	486	3	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_1	20.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGCTTGTCTGTGCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	120044684	120053622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_120044848_120051445_120051555_120053408
transcript_140171.nic	chr9	-	1854	8	ISM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	-271	800	-42	0	5prime_fragment	FALSE	canonical	3	256	junction_1	130.784134343269	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTTGGAAGTTAGTGGT	NA	False	NA	-9	True	AATAAA	-15	NA	66951286	66936129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_140185.nic	chr9	-	595	3	ISM	ENSMUSG00000032366.16	ENSMUST00000113686.8	998	8	-163	5994	-42	-182	5prime_fragment	FALSE	canonical	3	619	junction_2	20	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGAAGAAAAGATGGAGAT	NA	False	NA	NA	False	NA	NA	NA	66951286	66941241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_66941276_66943276_66943411_66950859
transcript_140187.known	chr9	-	1677	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113701.8	1677	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	241.896381483891	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGACATTTTCTAAATCTG	NA	False	NA	-16	True	AATAAA	-10	NA	66956483	66929887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955405_66955532_66956300
transcript_14020.known	chr10	+	1664	3	FSM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	0	0	0	0	multi-exon	FALSE	canonical	3	990	junction_2	137	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATTCTCAGAATCGGTT	NA	False	NA	NA	False	NA	NA	NA	120062974	120068487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_120063029_120063878_120064109_120067107
transcript_140200.nnic	chr9	-	776	7	NNC	ENSMUSG00000052698.16	novel	12132	58	NA	NA	-74371	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	10.3185377947761	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTGAAGAAAAGAAAGAAGA	NA	False	NA	NA	False	AAGAAA	-3	NA	67541356	67299845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_67299887_67300856_67300987_67302735_67302834_67304793_67304966_67367197_67367272_67466895_67466973_67541172
transcript_140201.nnic	chr9	-	778	7	NNC	ENSMUSG00000052698.16	novel	12132	58	NA	NA	-74360	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	13.1993265821489	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTGAAGAAAAGAAAGAAGA	NA	False	NA	NA	False	AAGAAA	-3	NA	67541345	67299845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_67299887_67300856_67300987_67302735_67302834_67304793_67304966_67367197_67367272_67466895_67466986_67541172
transcript_140207.known	chr9	+	1327	2	FSM	ENSMUSG00000091956.3	ENSMUST00000171652.3	1327	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTTGCAGCATTGATGT	NA	False	NA	NA	False	AATAAA	-22	NA	67666718	67668212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_67666799_67666965
transcript_140208.known	chr9	+	2591	10	FSM	ENSMUSG00000032238.18	ENSMUST00000113624.3	2591	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.19670329047433	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAACAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69196963	69287091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69197331_69255413_69255500_69269020_69269163_69271447_69271844_69278496_69278619_69280370_69280504_69281296_69281405_69282666_69282778_69284059_69284173_69286078
transcript_140211.known	chr9	+	1422	3	FSM	ENSMUSG00000032238.18	ENSMUST00000140351.8	1422	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGTGAGTCTCATGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	68561067	68572249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_68561255_68570626_68570695_68571082
transcript_140214.known	chr9	+	4169	16	FSM	ENSMUSG00000032235.16	ENSMUST00000034761.15	4169	16	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	13.7737270030865	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTTGTTCTTTAGA	4652	False	NA	69	True	AATACA	-21	NA	69305187	69340404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69305336_69306227_69306370_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
transcript_140221.nnic	chr9	+	4062	16	NNC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	0	-54	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	33.650887391304	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCAGAAATGTGTTTGTC	4652	False	NA	15	True	AATAAA	-9	NA	69305187	69340350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_69305283_69306227_69306370_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
transcript_14023.known	chr10	+	1463	3	FSM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	477.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGGAGTTTGACATTT	NA	False	NA	8	True	AATAAA	-17	NA	120063090	120067976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_120063455_120063878_120064109_120067107
transcript_140235.known	chr9	+	1447	13	FSM	ENSMUSG00000032231.15	ENSMUST00000034756.15	1447	13	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_7	12.0908022893437	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGTTGCCTTTGCTTTCA	NA	False	NA	NA	False	AATAAA	-25	NA	69360901	69399077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69361022_69371741_69371807_69374572_69374673_69383334_69383430_69386959_69387074_69390255_69390347_69391061_69391142_69392479_69392540_69393751_69393846_69394834_69394931_69395336_69395396_69396933_69397057_69398727
transcript_14024.nic	chr10	+	331	2	ISM	ENSMUSG00000020224.16	ENSMUST00000220107.2	767	4	-75	3357	-43	-3357	5prime_fragment	FALSE	canonical	3	1264	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCGGTCTTCATTTACAT	NA	False	NA	NA	False	NA	NA	NA	120062931	120064112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_120063029_120063878
transcript_140242.known	chr9	+	2464	11	FSM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	104.017354321286	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTTCTCTGGTGTATA	NA	False	NA	79	True	AATGAA	-19	NA	69896747	69915599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
transcript_140245.nnic	chr9	+	2381	10	NNC	ENSMUSG00000011958.18	novel	2328	10	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_9	87.4795214131094	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTCTTAATTACCTTC	NA	False	NA	19	True	AATAAA	-19	NA	69896755	69915539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914324
transcript_140246.known	chr9	+	2328	10	FSM	ENSMUSG00000011958.18	ENSMUST00000085393.13	2328	10	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_9	27.3933397330153	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGGTCTTAATTACCT	NA	False	NA	17	True	AATAAA	-17	NA	69896785	69915537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
transcript_140250.known	chr9	+	1465	9	FSM	ENSMUSG00000011958.18	ENSMUST00000117450.8	1465	9	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_7	18.7345769901538	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTAGAATTTTCTGTT	NA	False	NA	NA	False	ATTAAA	-24	NA	69896796	69911289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850
transcript_140260.known	chr9	+	833	7	FSM	ENSMUSG00000033543.18	ENSMUST00000133881.8	833	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	372.51159564353	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGAAACATGGAAGAGA	NA	False	NA	NA	False	NA	NA	NA	69919849	69929797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924206_69925961_69926101_69926670_69926798_69929718
transcript_140263.nic	chr9	+	957	6	NIC	ENSMUSG00000033543.18	novel	833	7	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	366.992098007573	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69919808	69930019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924206_69926670_69926798_69929718
transcript_140264.known	chr9	+	1199	6	FSM	ENSMUSG00000033543.18	ENSMUST00000131078.8	1199	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	384.735441569918	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919835	69930020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924474_69926670_69926798_69929718
transcript_140265.known	chr9	+	791	6	FSM	ENSMUSG00000033543.18	ENSMUST00000140265.8	791	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	407.297728940391	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919924	69930020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69924354_69924474_69926670_69926798_69929718
transcript_140267.known	chr9	+	888	6	FSM	ENSMUSG00000033543.18	ENSMUST00000116552.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	405.059798054559	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919847	69930020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69925961_69926101_69926670_69926798_69929718
transcript_14027.known	chr10	-	3810	6	FSM	ENSMUSG00000056758.15	ENSMUST00000159699.2	3810	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.20731381147328	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGTGTGTGTGTTCAG	NA	False	NA	-13	True	AATAAA	-20	NA	120312374	120197179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_120200202_120206530_120206631_120210572_120210606_120298568_120298620_120309156_120309244_120311857
transcript_140270.known	chr9	+	893	5	FSM	ENSMUSG00000033543.18	ENSMUST00000118198.8	893	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	95.7131129992124	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTGAATATACCAGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69919831	69930148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69926670_69926798_69929718
transcript_140272.nic	chr9	+	1055	5	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	-23	0	intron_retention	FALSE	canonical	3	38	junction_3	356.599477705731	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69919808	69930019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_69919944_69922573_69922693_69924100_69924474_69926670_69926798_69929718
transcript_140274.known	chr9	+	1034	5	FSM	ENSMUSG00000033543.18	ENSMUST00000119413.8	1034	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	343.832444658732	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69919852	69930019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69920235_69922573_69922693_69924100_69924206_69926670_69926798_69929718
transcript_140277.known	chr9	+	1613	3	FSM	ENSMUSG00000033543.18	ENSMUST00000126120.8	1613	3	0	0	0	0	multi-exon	FALSE	canonical	3	899	junction_2	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAGAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	69919852	69925503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69919944_69922573_69922693_69924100
transcript_140279.known	chr9	+	622	4	FSM	ENSMUSG00000033543.18	ENSMUST00000119905.8	622	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	423.805248774586	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69919846	69930019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69929718
transcript_140287.known	chr9	-	3703	9	FSM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	14.7118149798045	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTGGCATGGGACTTT	NA	False	NA	-20	True	AATAAA	-19	NA	70048860	69995792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_69998174_70000772_70000966_70003332_70003469_70006369_70006477_70010101_70010232_70017539_70017659_70032205_70032480_70033468_70033566_70048594
transcript_14029.known	chr10	-	3710	5	FSM	ENSMUSG00000056758.15	ENSMUST00000072777.14	3710	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.32717544487642	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGTGTGTGTGTTCAG	NA	False	NA	-13	True	AATAAA	-20	NA	120312374	120197179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_120200202_120210572_120210606_120298568_120298620_120309156_120309244_120311857
transcript_140301.known	chr9	+	4625	28	FSM	ENSMUSG00000032220.11	ENSMUST00000034745.9	4625	28	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	20.3906969292862	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTTTCTTCATGACA	NA	False	NA	20	True	AATAAA	-20	NA	70114649	70307048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_70114986_70194193_70194338_70204548_70204639_70208974_70209070_70223873_70223962_70227350_70227441_70229673_70229806_70232114_70232250_70234425_70234559_70242396_70242594_70245010_70245092_70245998_70246086_70248562_70248650_70249263_70249432_70250325_70250412_70253968_70254051_70260541_70260649_70266566_70266666_70269504_70269650_70274897_70275013_70275950_70276121_70277638_70277785_70283785_70283933_70285492_70285651_70286002_70286093_70291085_70291288_70303057_70303228_70306003
transcript_140316.known	chr9	-	1531	9	FSM	ENSMUSG00000032218.8	ENSMUST00000034742.8	1531	9	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_2	68.4557338723353	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328829	70314973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
transcript_14033.known	chr10	-	4743	13	FSM	ENSMUSG00000048661.15	ENSMUST00000119944.8	4743	13	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_12	16.3112095062125	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCGTCTTTGTTTTAAAG	NA	False	NA	-1	True	ATTAAA	-24	NA	120815237	120759317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_120761462_120761671_120761751_120761839_120761946_120763850_120763933_120766946_120767126_120767625_120767729_120767832_120767935_120769299_120769446_120769534_120769615_120783108_120783177_120785201_120785269_120788122_120788161_120813688
transcript_140335.nic	chr9	-	4973	15	NIC	ENSMUSG00000032217.14	novel	4961	14	NA	NA	-121	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_14	73.562863579113	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTTGTGTTTCATAA	2125	False	NA	-19	True	AATAAA	-15	NA	70411128	70332711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
transcript_140336.nic	chr9	-	4921	15	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_14	71.3097941007676	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTTGTGTTTCATAA	2180	False	NA	-19	True	AATAAA	-15	NA	70411073	70332711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
transcript_140342.known	chr9	-	4880	15	FSM	ENSMUSG00000032217.14	ENSMUST00000034739.12	4880	15	0	0	0	0	multi-exon	TRUE	canonical	3	68	junction_2	86.8932021013645	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTTTGTGTTTCATAAT	2246	False	NA	-18	True	AATAAA	-16	NA	70411007	70332710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
transcript_140347.nic	chr9	-	4519	15	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-121	-457	combination_of_known_junctions	FALSE	canonical	3	128	junction_14	71.3097941007676	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCTCTTGTTTTATTTC	2125	False	NA	-1	True	AATAAA	-15	NA	70411128	70333168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221_70410285_70410740
transcript_14035.known	chr10	+	2294	10	FSM	ENSMUSG00000020218.12	ENSMUST00000020439.11	2294	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	5.2704627669473	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGGGTCTTTGTAAGACT	NA	False	NA	NA	False	AATAAA	-27	NA	120869864	120936555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_120870396_120870870_120871011_120911150_120911260_120918030_120918172_120919792_120919889_120920813_120920910_120926015_120926112_120931903_120932000_120932545_120932642_120935662
transcript_140350.nic	chr9	-	4839	14	NIC	ENSMUSG00000032217.14	novel	4961	14	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	148	junction_8	58.7438527565769	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTTGTGTTTCATAA	2196	False	NA	-19	True	AATAAA	-15	NA	70411057	70332711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
transcript_140352.nic	chr9	-	4913	14	NIC	ENSMUSG00000032217.14	novel	4961	14	NA	NA	-121	0	combination_of_known_junctions	FALSE	canonical	3	170	junction_8	55.2423386211279	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTTGTGTTTCATAA	2125	False	NA	-19	True	AATAAA	-15	NA	70411128	70332711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
transcript_140355.nic	chr9	-	4852	14	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_2	77.5959798873276	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTTGTGTTTCATAA	2210	False	NA	-19	True	AATAAA	-15	NA	70411043	70332711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
transcript_140358.nic	chr9	-	4456	14	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-121	-457	combination_of_known_junctions	FALSE	canonical	3	170	junction_8	55.2423386211279	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCTCTTGTTTTATTTC	2125	False	NA	-1	True	AATAAA	-15	NA	70411128	70333168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
transcript_14036.known	chr10	+	3855	14	FSM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	13.2731878157773	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCAATGTGTCCTTTGT	NA	False	NA	4	True	ATTAAA	-16	NA	121200994	121233150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_121201264_121207048_121207109_121210262_121210470_121212112_121212179_121212540_121212640_121213926_121214095_121216022_121216106_121217077_121217197_121219244_121219349_121224005_121224108_121226528_121226637_121227275_121227387_121228585_121228747_121230952
transcript_140360.nic	chr9	-	4480	14	NIC	ENSMUSG00000032217.14	novel	4880	15	NA	NA	-121	-457	combination_of_known_junctions	FALSE	canonical	3	68	junction_2	77.5959798873276	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCTCTTGTTTTATTTC	2125	False	NA	-1	True	AATAAA	-15	NA	70411128	70333168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357824_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410740
transcript_14037.known	chr10	+	1358	2	FSM	ENSMUSG00000034707.8	ENSMUST00000219847.2	1358	2	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	121201012	121208155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_121201264_121207048
transcript_140373.nic	chr9	-	729	3	ISM	ENSMUSG00000032217.14	ENSMUST00000034739.12	4880	15	-121	50962	-121	-20477	5prime_fragment	FALSE	canonical	3	128	junction_2	1	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGTGTTGTGAGAAAAAAG	2125	False	NA	NA	False	AAGAAA	-4	NA	70411128	70383672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_70383951_70410221_70410285_70410740
transcript_140374.nic	chr9	-	666	2	ISM	ENSMUSG00000032217.14	ENSMUST00000213694.2	3555	5	-122	20477	-121	-20477	5prime_fragment	FALSE	canonical	3	178	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGTGTTGTGAGAAAAAAG	2125	False	NA	NA	False	AAGAAA	-4	NA	70411128	70383672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_70383951_70410740
transcript_140375.known	chr9	-	4961	14	FSM	ENSMUSG00000032217.14	ENSMUST00000213647.2	4961	14	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_13	65.8687955321188	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTTGTGTTTCATAA	2593	False	NA	-19	True	AATAAA	-15	NA	70410660	70332711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553_70349680_70350683_70351033_70357567_70357821_70360782_70361100_70365105_70365301_70366271_70366436_70376636_70376764_70383057_70383951_70410221
transcript_140376.known	chr9	+	3691	21	FSM	ENSMUSG00000032212.11	ENSMUST00000049263.9	3691	21	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_6	54.986612006924	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGCTAATGTATTGAGA	NA	False	NA	15	True	AATAAA	-16	NA	70450151	70499514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480738_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
transcript_140379.nic	chr9	+	1773	12	ISM	ENSMUSG00000032212.11	ENSMUST00000217593.2	3319	20	-190	11823	-64	-2	5prime_fragment	FALSE	canonical	3	132	junction_6	36.3799963198377	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAAAGATACTAAGAAAATA	NA	False	NA	NA	False	ATTAAA	-44	NA	70449971	70487510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480738_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448
transcript_14038.known	chr10	-	3522	5	FSM	ENSMUSG00000025795.9	ENSMUST00000026902.9	3522	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	3.60555127546399	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATGTCTTTATTTATG	NA	False	NA	NA	False	ATTAAA	-24	NA	121312252	121246254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_121248991_121250262_121250373_121251970_121252194_121252989_121253098_121311907
transcript_140380.nic	chr9	+	1670	12	ISM	ENSMUSG00000032212.11	ENSMUST00000216816.2	3755	21	-15	12006	-15	-2	5prime_fragment	FALSE	canonical	3	66	junction_6	52.1523515154882	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAAAGATACTAAGAAAATA	NA	False	NA	NA	False	ATTAAA	-44	NA	70450020	70487510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480792_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448
transcript_14039.known	chr10	-	3005	21	FSM	ENSMUSG00000020115.4	ENSMUST00000219400.2	3005	21	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_17	34.6538598138793	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGGCTTGTGTGCTTTT	3888	False	NA	-5	True	AATAAA	-17	NA	121422682	121382364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747_121407930_121412182_121412309_121414484_121414626_121420100_121420247_121422599
transcript_140393.nic	chr9	+	625	4	ISM	ENSMUSG00000032212.11	ENSMUST00000217593.2	3319	20	-190	30196	-64	49	5prime_fragment	FALSE	canonical	3	203	junction_1	18.3726850393609	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAGGAAATTGTGCATT	NA	False	NA	NA	False	AATGAA	-33	NA	70449971	70469137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057
transcript_140394.nic	chr9	+	729	4	ISM	ENSMUSG00000032212.11	ENSMUST00000217593.2	3319	20	-211	30113	-85	132	5prime_fragment	FALSE	canonical	3	203	junction_1	18.3726850393609	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGAAGATAGAGAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	70449950	70469220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057
transcript_140395.known	chr9	+	3755	21	FSM	ENSMUSG00000032212.11	ENSMUST00000216816.2	3755	21	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	63.2220491600834	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCTAATGTATTGAGAAC	NA	False	NA	17	True	AATAAA	-18	NA	70450035	70499516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480792_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
transcript_140399.known	chr9	-	2521	9	FSM	ENSMUSG00000042444.11	ENSMUST00000213380.2	2521	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.34305722818264	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGACACTAATACTTATAAC	NA	False	NA	NA	False	NA	NA	NA	70564433	70511829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_70512569_70514739_70514941_70518110_70518285_70524045_70524189_70534036_70534140_70538277_70538437_70541286_70541352_70552170_70552229_70563554
transcript_140404.known	chr9	-	1779	5	FSM	ENSMUSG00000042444.11	ENSMUST00000214293.2	1779	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	3.76662979332984	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTTAAAAAAATATATAACT	NA	False	NA	NA	False	AATAAA	-16	NA	70564429	70533517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_70534140_70538277_70538437_70541286_70541352_70552170_70552229_70563554
transcript_140407.known	chr9	+	4593	16	FSM	ENSMUSG00000054693.15	ENSMUST00000067880.13	4593	16	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_13	22.3632635264971	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGGTCTATGCTCTTTG	4950	False	NA	14	True	AATAAA	-19	NA	70586278	70687511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_70586542_70610568_70610720_70625939_70626059_70629894_70630054_70647356_70647458_70651132_70651286_70653515_70653609_70655364_70655549_70661443_70661608_70668864_70669049_70673233_70673385_70674153_70674338_70675090_70675200_70676073_70676295_70683654_70683782_70685281
transcript_140412.nic	chr9	+	1517	10	ISM	ENSMUSG00000054693.15	ENSMUST00000140205.8	2720	16	-71	16741	-71	13527	5prime_fragment	FALSE	canonical	3	236	junction_5	18.1747348716376	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAATTACATCATGTATG	4879	False	NA	NA	False	AAAAAG	-5	NA	70586207	70668923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_70586542_70610568_70610720_70625939_70626059_70629894_70630054_70647356_70647458_70651132_70651286_70653515_70653609_70655364_70655549_70661443_70661608_70668864
transcript_140417.known	chr9	+	2264	14	FSM	ENSMUSG00000013584.6	ENSMUST00000034723.6	2264	14	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.4973358585766	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGTTTGTGTTTGTGAG	NA	False	NA	NA	False	AATAAA	-24	NA	71123070	71203525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_71123246_71159879_71159985_71160197_71160339_71162315_71162446_71169012_71169075_71171068_71171198_71171314_71171429_71188885_71188989_71190659_71190845_71192135_71192301_71192397_71192556_71193201_71193277_71200887_71200977_71202892
transcript_140422.known	chr9	-	2138	4	FSM	ENSMUSG00000032199.14	ENSMUST00000163972.2	2138	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	1098.58130736368	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCCCGAGCTCATGGCG	3447	False	NA	-33	True	AATAAA	-15	NA	71392240	71385752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392016
transcript_140424.known	chr9	-	2200	4	FSM	ENSMUSG00000032199.14	ENSMUST00000034720.12	2200	4	0	0	0	0	multi-exon	FALSE	canonical	3	2231	junction_1	103.721850264167	2461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGAGTTTCCGTTCT	2470	False	NA	1	True	NA	NA	NA	71393217	71385718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392965
transcript_140425.known	chr9	-	255	2	FSM	ENSMUSG00000032199.14	ENSMUST00000233263.2	255	2	0	0	0	0	multi-exon	FALSE	canonical	3	2285	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATCTCAGACACAGTTG	2500	False	NA	NA	False	NA	NA	NA	71393187	71391054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_71391088_71392965
transcript_140426.known	chr9	-	2283	13	FSM	ENSMUSG00000041361.14	ENSMUST00000093823.8	2283	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.32024829314624	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTAGTGTCTCTTTTCTAT	NA	False	NA	NA	False	AATAAA	-18	NA	71499642	71411628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_71412512_71422350_71422452_71432063_71432148_71453950_71454057_71456005_71456086_71457460_71457590_71459520_71459647_71462866_71463020_71466129_71466244_71468236_71468330_71471691_71471848_71486892_71486980_71499471
transcript_140427.known	chr9	-	6754	19	FSM	ENSMUSG00000032232.15	ENSMUST00000072899.9	6754	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	5.66666666666667	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGGCTCTTGTATTAT	NA	False	NA	NA	False	AATAAA	-16	NA	71678884	71533790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_71536675_71537757_71537922_71538143_71538253_71539012_71539138_71539879_71539964_71548640_71548731_71552773_71552936_71557503_71557675_71558515_71558669_71562574_71562680_71563327_71563535_71612429_71612643_71622604_71622741_71623689_71623839_71624677_71624780_71628877_71628984_71630815_71630911_71631759_71633365_71678790
transcript_140428.nic	chr9	-	1581	2	ISM	ENSMUSG00000032232.15	ENSMUST00000121322.8	6541	18	-5	98092	-5	-91968	5prime_fragment	FALSE	canonical	3	28	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGGAAGAAATCAAAATAGC	NA	False	NA	NA	False	AATAAA	-4	NA	71678889	71631882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_71633365_71678790
transcript_140430.known	chr9	-	6299	21	FSM	ENSMUSG00000032228.17	ENSMUST00000183404.8	6299	21	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_7	13.3626344707921	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGGCTGAAGATTTATTA	9378	False	NA	NA	False	NA	NA	NA	72019129	71749969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71776280_71776353_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019_72018117_72018857
transcript_140433.known	chr9	-	4621	20	FSM	ENSMUSG00000032228.17	ENSMUST00000034755.13	4621	20	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_6	15.470103416687	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTGAGTTTTTTACACTC	9404	False	NA	-27	True	AATAAA	-30	NA	72019103	71751549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019_72018117_72018857
transcript_140439.nic	chr9	-	2030	18	ISM	ENSMUSG00000032228.17	ENSMUST00000183404.8	6299	21	-94	15899	-70	0	5prime_fragment	FALSE	canonical	3	53	junction_4	13.4202759371175	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGATGAAAACCTTCAT	9284	False	NA	NA	False	AAAACA	-4	NA	72019223	71765868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_71765929_71766121_71766237_71775353_71775561_71776280_71776353_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019_72018117_72018857
transcript_140441.nic	chr9	-	1958	17	ISM	ENSMUSG00000032228.17	ENSMUST00000034755.13	4621	20	-120	14319	-70	0	5prime_fragment	FALSE	canonical	3	33	junction_3	15.9334553691282	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGATGAAAACCTTCAT	9284	False	NA	NA	False	AAAACA	-4	NA	72019223	71765868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_71765929_71766121_71766237_71775353_71775561_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019_72018117_72018857
transcript_140444.known	chr9	-	4308	14	FSM	ENSMUSG00000032228.17	ENSMUST00000183918.8	4308	14	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_13	26.2527541525021	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACTAGTGAGTTTTTTA	NA	False	NA	-32	True	AATAAA	-25	NA	71803678	71751554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71776280_71776353_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71803211
transcript_140447.known	chr9	-	2193	6	FSM	ENSMUSG00000032228.17	ENSMUST00000184196.2	2193	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	11.8558002682231	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAGAAAAAAA	9378	False	NA	NA	False	ATTAAA	-21	NA	72019129	71849726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019_72018117_72018857
transcript_140456.known	chr9	+	4387	22	FSM	ENSMUSG00000038535.18	ENSMUST00000098576.10	4387	22	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_20	11.1161666503221	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTGTTTGGCTAGCCT	NA	False	NA	20	True	AATAAA	-29	NA	72182160	72271059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72258806_72258853_72267567_72267624_72269215
transcript_140463.known	chr9	+	4200	21	FSM	ENSMUSG00000038535.18	ENSMUST00000183410.8	4200	21	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_19	12.0883208097734	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTTTATATTCAGATT	NA	False	NA	4	True	AATAAA	-13	NA	72182285	72271043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
transcript_140467.known	chr9	-	2794	12	FSM	ENSMUSG00000090626.10	ENSMUST00000184125.8	2794	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_11	31.4406169897191	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAGTTTGCTATTTGTA	7736	False	NA	NA	False	NA	NA	NA	72399383	72367001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
transcript_140483.nic	chr9	-	879	9	ISM	ENSMUSG00000090626.10	ENSMUST00000184557.8	1434	13	86	16558	-54	0	5prime_fragment	FALSE	canonical	3	143	junction_8	33.6368473552442	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAACATTTTGCCTCGCCT	7822	False	NA	NA	False	AATAAA	-43	NA	72399297	72385018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
transcript_140484.nic	chr9	-	779	9	ISM	ENSMUSG00000090626.10	ENSMUST00000184557.8	1434	13	86	16658	-54	0	5prime_fragment	FALSE	canonical	3	143	junction_8	33.6368473552442	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATCCCAGCAATCCCAAA	7822	False	NA	NA	False	NA	NA	NA	72399297	72385118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
transcript_140489.known	chr9	+	854	6	FSM	ENSMUSG00000032221.15	ENSMUST00000183809.8	854	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	16.8689063071676	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGGAAGATCTACGAGGA	NA	False	NA	NA	False	NA	NA	NA	72345292	72356011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72345397_72345865_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72355810
transcript_140490.nic	chr9	-	437	6	ISM	ENSMUSG00000090626.10	ENSMUST00000185106.8	969	8	74	2213	-54	-2034	internal_fragment	FALSE	canonical	3	143	junction_5	36.7292798731475	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAGGTACAGCACAGTTT	7822	False	NA	NA	False	GATAAA	-15	NA	72399297	72389734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
transcript_140491.nic	chr9	+	903	3	ISM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	13791	3449	13791	-3449	3prime_fragment	FALSE	canonical	3	85	junction_1	11.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGAATTAGTCATTTTT	1831	False	NA	5	True	ATTAAA	-17	NA	72359607	72365858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_72360121_72364059_72364186_72365594
transcript_140492.known	chr9	-	793	9	FSM	ENSMUSG00000090626.10	ENSMUST00000183428.8	793	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	68.7622716320513	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCATCAAAAAATTGAAGTG	8329	False	NA	NA	False	ACTAAA	-40	NA	72395318	72369256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388030_72389728_72389812_72391350_72391397_72394061_72394142_72395293
transcript_140494.known	chr9	+	7880	9	FSM	ENSMUSG00000037674.16	ENSMUST00000163401.9	7880	9	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_7	49.9699909945959	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGATGTTAAGATAATTTA	677	False	NA	NA	False	ATTAAA	-21	NA	72439521	72530111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902_72519111_72522318_72522615_72523918
transcript_140495.known	chr9	+	1457	8	FSM	ENSMUSG00000037674.16	ENSMUST00000183372.8	1457	8	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	37.8380005512221	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTGATTACCTGGTTTT	1046	False	NA	9	True	AATAAA	-18	NA	72439890	72519705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72439940_72440099_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
transcript_140498.known	chr9	+	1554	7	FSM	ENSMUSG00000037674.16	ENSMUST00000184015.2	1554	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_3	16.2933183305987	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTTTTTGGTTGGT	1172	False	NA	72	True	AATAAA	-30	NA	72440016	72519768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
transcript_140503.known	chr9	+	5499	29	FSM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	553.560943449088	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTCCGTTACCTAAA	NA	False	NA	NA	False	AATAAA	-27	NA	72569627	72657134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
transcript_140510.nic	chr9	+	2726	27	ISM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	-96	6285	-96	-3586	5prime_fragment	FALSE	non_canonical	0	0	junction_1	566.373708354116	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACGCTTACTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	72569531	72650849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821
transcript_140520.known	chr9	+	3329	10	FSM	ENSMUSG00000032216.16	ENSMUST00000184450.8	3329	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	906.918361033807	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATTTGTGCCGTTAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	72569763	72628072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499
transcript_140525.known	chr9	+	3502	1	FSM	ENSMUSG00000102573.2	ENSMUST00000192735.2	3502	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAACCAAAA	NA	False	NA	NA	False	GATAAA	-18	NA	72598830	72602332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72598800_72602300
transcript_140527.known	chr9	+	9148	20	FSM	ENSMUSG00000036030.10	ENSMUST00000055535.9	9148	20	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	6.01935934968244	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAACAAAAAA	NA	False	NA	NA	False	AATAAA	-17	NA	72714155	72824573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72714815_72716736_72717040_72749976_72750122_72752139_72752274_72755190_72755329_72755595_72755755_72757033_72757194_72758762_72759011_72762237_72762403_72764056_72764363_72766042_72766232_72798058_72798155_72799090_72799278_72799509_72799638_72801105_72801277_72811986_72812170_72813429_72813551_72814982_72815146_72817918_72818024_72819185
transcript_140531.known	chr9	+	7916	3	FSM	ENSMUSG00000034910.6	ENSMUST00000038489.6	7916	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGTGTAATTCTAATGA	NA	False	NA	NA	False	AAAAAG	-43	NA	72832926	72859463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72833243_72850201_72850288_72851949
transcript_140534.known	chr9	-	2193	12	FSM	ENSMUSG00000079469.11	ENSMUST00000098566.5	2193	12	0	0	0	0	multi-exon	FALSE	non_canonical	3	35	junction_5	10.1158577744251	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCCCCCCAGCAGGAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	72946981	72922977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72930510_72930563_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
transcript_140545.known	chr9	+	2839	10	FSM	ENSMUSG00000034563.17	ENSMUST00000140675.8	2839	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_9	64.8245495335079	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTAGAGTTGCCAATTA	NA	False	NA	5	True	AATAAA	-29	NA	72892886	72923620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920609_72922613_72922712_72923179
transcript_140548.known	chr9	+	1975	9	FSM	ENSMUSG00000092192.8	ENSMUST00000034734.9	1975	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	4.44233891097922	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTCTGAAAACCTTATT	9178	False	NA	NA	False	AATAAA	-15	NA	72866066	72880346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72866280_72867863_72868012_72868539_72868674_72869196_72869423_72871372_72871519_72872450_72872561_72876313_72876468_72879254_72879361_72879608
transcript_140551.known	chr9	+	3151	9	FSM	ENSMUSG00000034563.17	ENSMUST00000037977.15	3151	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	60.1040764008565	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGAGTTGCCAATTACG	NA	False	NA	7	True	AATAAA	-31	NA	72892710	72923622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920275_72922613
transcript_140552.known	chr9	+	2969	9	FSM	ENSMUSG00000034563.17	ENSMUST00000085350.11	2969	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	47.1963981676568	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTCTCAAGTCTGGCG	NA	False	NA	NA	False	AATAAA	-23	NA	72892886	72923282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920609_72922613
transcript_140554.known	chr9	+	2877	8	FSM	ENSMUSG00000034563.17	ENSMUST00000124008.2	2877	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	63.542368960098	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATGAGACTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	72892900	72921213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912936_72913175_72917578_72917695_72919211
transcript_140556.known	chr9	+	1612	7	FSM	ENSMUSG00000092192.8	ENSMUST00000098567.9	1612	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	7.58104361036277	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTTACTCTGAAAACCTT	9178	False	NA	NA	False	AATAAA	-12	NA	72866066	72880343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72866280_72867863_72868012_72871372_72871519_72872450_72872561_72876313_72876468_72879254_72879361_72879608
transcript_140558.known	chr9	+	496	2	FSM	ENSMUSG00000098332.3	ENSMUST00000184126.3	496	2	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_1	0	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTTATTTATAAAGGT	NA	False	NA	NA	False	AATAAA	-19	NA	72946999	72950061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72947148_72949713
transcript_140559.known	chr9	-	711	2	FSM	ENSMUSG00000086158.3	ENSMUST00000124565.3	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTTTTTTTT	NA	False	NA	1	True	AATAAA	-29	NA	72892658	72887003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_72887479_72892422
transcript_140561.known	chr9	+	2979	6	FSM	ENSMUSG00000032202.12	ENSMUST00000034722.5	2979	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.86781592116274	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAATAATAAAA	NA	False	NA	NA	False	ATTAAA	-11	NA	72952138	73004874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_72952294_72982674_72982850_72989683_72989770_72992212_72992317_72994358_72994483_73002539
transcript_140565.known	chr9	+	734	6	FSM	ENSMUSG00000032215.16	ENSMUST00000113505.4	734	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	360.815188150388	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAACTGTGGGCATAAAAT	8635	False	NA	-10	True	NA	NA	NA	73020784	73029851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_73020866_73022159_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
transcript_140567.known	chr9	+	1228	4	FSM	ENSMUSG00000092622.9	ENSMUST00000173734.9	1228	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	87.8116671569837	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009679	73011720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_73009958_73010111_73010292_73010497_73011172_73011624
transcript_140569.known	chr9	+	1681	3	FSM	ENSMUSG00000092622.9	ENSMUST00000034737.13	1681	3	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	18.5	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009679	73011720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_73009958_73010111_73010292_73010497
transcript_140571.nic	chr9	+	1925	2	ISM	ENSMUSG00000092622.9	ENSMUST00000034737.13	1681	3	-33	-5	-33	5	intron_retention	FALSE	canonical	3	253	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGTGTATTTGAATGGA	NA	False	NA	31	True	AATAAA	-18	NA	73009646	73011725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_73009958_73010111
transcript_140573.known	chr9	+	4355	13	FSM	ENSMUSG00000034858.17	ENSMUST00000170846.8	4355	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	2.59673940848048	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGCTTTTATTCTTAA	NA	False	NA	NA	False	AATATA	-20	NA	74860334	74939750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_74860561_74860995_74861113_74911546_74911732_74913569_74913773_74914243_74914370_74915932_74917749_74920222_74920337_74923125_74923206_74924319_74924429_74926278_74926438_74930866_74930936_74932932_74933130_74938796
transcript_140578.known	chr9	+	429	4	FSM	ENSMUSG00000007656.14	ENSMUST00000170308.8	429	4	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	2500.61556865949	737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATTTCTCTGACTACG	NA	False	NA	42	True	ATTAAA	-29	NA	74944958	74964120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_74945006_74945188_74945244_74959514_74959638_74963916
transcript_140579.known	chr9	+	610	2	FSM	ENSMUSG00000007656.14	ENSMUST00000169448.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74944958	74945755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_74945002_74945188
transcript_140580.known	chr9	+	4046	3	FSM	ENSMUSG00000007656.14	ENSMUST00000007800.8	4046	3	0	0	0	0	multi-exon	FALSE	canonical	3	5814	junction_2	96	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	False	NA	20	True	AATAAA	-30	NA	74944999	74967595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_74945244_74959514_74959638_74963916
transcript_140582.known	chr9	+	6372	41	FSM	ENSMUSG00000034593.17	ENSMUST00000155282.9	6372	41	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_28	18.4022926560796	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGTGTAGATGCCCGTTT	2531	False	NA	75	True	NA	NA	NA	74978667	75125832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_74978942_75023467_75023579_75027954_75028127_75030192_75030338_75037253_75037411_75043624_75043769_75047929_75048012_75048716_75048825_75051354_75051462_75054146_75054413_75055137_75055220_75059174_75059316_75061037_75061164_75063463_75063548_75067699_75067862_75068713_75068812_75071411_75071499_75071577_75071687_75074300_75074513_75076206_75076364_75078820_75079061_75081233_75081483_75083799_75083894_75087305_75087455_75089180_75089295_75091559_75091704_75091919_75091974_75093176_75093405_75094803_75094813_75097181_75097283_75099665_75099747_75101220_75101420_75104924_75105019_75108553_75108701_75110989_75111145_75116495_75116586_75118299_75118451_75120073_75120357_75122366_75122542_75124780_75124862_75125122
transcript_140585.nic	chr9	+	3467	22	ISM	ENSMUSG00000034593.17	ENSMUST00000155282.9	6372	41	-216	44412	-18	-2419	5prime_fragment	FALSE	canonical	3	40	junction_18	9.91139887525465	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCGATCAGAGAAAAAGTCT	2315	False	NA	NA	False	AAGAAA	-31	NA	74978451	75081420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_74978942_75023467_75023579_75027954_75028127_75030192_75030338_75037253_75037411_75043624_75043769_75047929_75048012_75048716_75048825_75051354_75051462_75054146_75054413_75055137_75055220_75059174_75059316_75061037_75061164_75063463_75063548_75067699_75067862_75068713_75068812_75071411_75071499_75071577_75071687_75074300_75074513_75076206_75076364_75078820_75079061_75081233
transcript_140588.known	chr9	+	6727	41	FSM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_20	11.0181384543851	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGATGCACCATTTTTTTC	5128	False	NA	8	True	AATAAA	-18	NA	75139301	75212733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240_75165507_75169489_75169572_75170266_75170408_75173349_75173476_75174306_75174391_75176802_75176938_75177550_75177649_75178824_75178912_75180126_75180239_75180790_75181003_75182752_75182919_75183183_75183331_75184213_75184379_75185506_75185601_75186617_75186682_75189117_75189299_75191174_75191269_75191428_75191493_75192214_75192296_75193692_75193874_75195330_75195425_75196174_75196239_75196340_75196510_75198130_75198219_75199435_75199535_75201207_75201363_75202443_75202534_75203291_75203443_75204685_75204969_75208087_75208263_75208685_75208767_75211211
transcript_140592.known	chr9	+	3189	12	FSM	ENSMUSG00000033590.9	ENSMUST00000215620.2	3189	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	7.22140985754018	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGATGCACCATTTTTTTC	1717	False	NA	8	True	AATAAA	-18	NA	75195112	75212733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_75195425_75196174_75196239_75196340_75196510_75198130_75198219_75199435_75199535_75201207_75201363_75202443_75202534_75203291_75203443_75204685_75204969_75208087_75208263_75208685_75208767_75211211
transcript_140595.nic	chr9	+	1623	10	ISM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	-39	47085	-39	0	5prime_fragment	FALSE	canonical	3	35	junction_4	9.15302014516399	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGGGTCATGGTGTCC	5089	False	NA	NA	False	AATATA	-1	NA	75139262	75165648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240
transcript_140598.known	chr9	+	2105	11	FSM	ENSMUSG00000032192.10	ENSMUST00000215875.2	2105	11	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_6	3.38230690505755	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCAAGGGGTATCTTGTC	375	False	NA	1	True	NA	NA	NA	75221417	75253153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_75221666_75234414_75234552_75239154_75239197_75240090_75240168_75241450_75241584_75242932_75243077_75244552_75244645_75247469_75247519_75250789_75250887_75251762_75251930_75252234
transcript_140602.known	chr9	-	4089	6	FSM	ENSMUSG00000042688.17	ENSMUST00000168937.8	4089	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	119.229862031288	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCACTGCTCAGTCTTTT	NA	False	NA	-46	True	AATAAA	-18	NA	75316641	75294183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75316483
transcript_140603.known	chr9	-	4072	6	FSM	ENSMUSG00000042688.17	ENSMUST00000049355.11	4072	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	19.2727787306346	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTCACTGCTCAGTCTT	NA	False	NA	-48	True	AATAAA	-16	NA	75317287	75294185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75317144
transcript_14061.nnic	chr10	-	3792	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-2553	0	intron_retention	FALSE	canonical	3	239	junction_24	221.439792262417	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTCTTTTCCGGAGTTAT	9298	False	NA	NA	False	AATAAA	-21	NA	121464790	121425523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121464536
transcript_140610.known	chr9	+	2180	12	FSM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_2	48.4889013457617	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCTATGCTTAAGAAAAC	926	False	NA	5	True	AATAAA	-14	NA	75348817	75373714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339_75364476_75365356_75365544_75368287_75368386_75373475
transcript_140613.nic	chr9	+	1710	9	ISM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	-59	9244	-47	92	5prime_fragment	FALSE	canonical	3	353	junction_2	42.7929243567205	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTAAGTTGCCTAGGC	867	False	NA	NA	False	NA	NA	NA	75348758	75364470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339
transcript_140614.nic	chr9	+	1382	7	ISM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	-59	11776	-47	-2440	5prime_fragment	FALSE	canonical	3	353	junction_2	45.5411901469428	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATGAAGAAGGAAATGAAAT	867	False	NA	NA	False	TTTAAA	-38	NA	75348758	75361938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905
transcript_140634.nnic	chr9	+	2510	4	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	-94	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_1	3.2659863237109	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTTATGTGTGTGCATT	NA	False	NA	16	True	AATAAA	-21	NA	75375803	75393963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_75375966_75388729_75388947_75390380_75390480_75391931
transcript_140650.known	chr9	-	3667	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGCTGTATGCCACATTA	NA	False	NA	71	True	AATAAA	-30	NA	75466939	75404988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
transcript_140664.known	chr9	-	3918	2	FSM	ENSMUSG00000058587.10	ENSMUST00000217459.2	3918	2	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACCCTGTTTTATCTTCC	NA	False	NA	NA	False	NA	NA	NA	75466939	75436114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_75439875_75466781
transcript_140665.known	chr9	-	898	4	FSM	ENSMUSG00000058587.10	ENSMUST00000215821.2	898	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	245.142588892442	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGGATTAATTTTGGTA	NA	False	NA	NA	False	NA	NA	NA	75466876	75428181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_75428661_75436650_75436808_75439707_75439875_75466781
transcript_14067.known	chr10	-	6005	25	FSM	ENSMUSG00000034667.9	ENSMUST00000218004.2	6005	25	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_24	166.742560845221	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTGGAGTGGGCCTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	121462237	121423284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
transcript_140671.known	chr9	-	9884	10	FSM	ENSMUSG00000032186.16	ENSMUST00000064433.11	9884	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	6.87992248018343	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCCTGGTTCCTGGCTA	NA	False	NA	-1	True	AATAAA	-16	NA	75518607	75472905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_75481406_75483927_75484073_75484390_75484535_75489111_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504679_75518305
transcript_140676.nic	chr9	-	1234	9	ISM	ENSMUSG00000032186.16	ENSMUST00000098552.10	9871	10	123	11036	-10	-2841	5prime_fragment	FALSE	canonical	3	14	junction_8	3.34477204006491	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGACCTGGGTAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	75518462	75483938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_75484073_75484390_75484535_75489111_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
transcript_140678.known	chr9	+	1189	3	FSM	ENSMUSG00000032184.6	ENSMUST00000034702.6	1189	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	3	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTTCATTTCTCTTATT	NA	False	NA	7	True	AATAAA	-17	NA	75533022	75545053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_75533320_75542667_75543000_75544493
transcript_140679.known	chr9	-	2152	12	FSM	ENSMUSG00000032181.8	ENSMUST00000213324.2	2152	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	1.99171839092788	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTGAGAAACAGCTGCTT	7835	False	NA	-8	True	AATAAA	-25	NA	75591297	75550646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_75551227_75558912_75558994_75568534_75568673_75570489_75570559_75572935_75573053_75576496_75576675_75582626_75582777_75583950_75584094_75589245_75589462_75589555_75589602_75590219_75590273_75590916
transcript_140683.known	chr9	-	3121	14	FSM	ENSMUSG00000032352.17	ENSMUST00000183873.8	3121	14	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_5	6.66972316521396	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATAGCTTTTTAAGAATT	NA	False	NA	NA	False	AATAAA	-17	NA	77452152	77338104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_77339563_77341275_77341413_77342328_77342502_77349458_77349575_77358639_77358724_77359884_77360004_77362439_77362585_77364671_77364747_77365112_77365177_77365352_77365410_77375839_77375930_77379433_77379513_77406515_77406634_77451746
transcript_14069.nic	chr10	+	2331	4	NIC	ENSMUSG00000053684.9	novel	3123	3	NA	NA	-25	-4	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	66.001683480213	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATACATGTATATATGGT	NA	False	NA	NA	False	AATAAA	-21	NA	121575816	121588766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_121576116_121581235_121581522_121586207_121587020_121587832
transcript_140693.known	chr9	+	3423	16	FSM	ENSMUSG00000032350.10	ENSMUST00000034905.9	3423	16	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	20.3437131976114	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTACGTGTATGAGTGG	4420	False	NA	18	True	AATAAA	-45	NA	77661816	77701767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_77662242_77682360_77682474_77683407_77683591_77686803_77686918_77688365_77688425_77688515_77688650_77692615_77692691_77693031_77693149_77693992_77694132_77694558_77694672_77695088_77695182_77695469_77695575_77698996_77699079_77699161_77699266_77699334_77699456_77700321
transcript_14070.nnic	chr10	+	1006	3	NNC	ENSMUSG00000053684.9	novel	3123	3	NA	NA	-25	-5022	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	69	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACCCCCATCCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	121575816	121583266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_121576116_121581235_121581522_121582845
transcript_14071.known	chr10	+	3123	3	FSM	ENSMUSG00000053684.9	ENSMUST00000065600.8	3123	3	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	1	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGTATATATGGTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	121575841	121588770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_121576116_121581235_121581522_121586207
transcript_140733.known	chr9	+	2782	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	0	0	0	0	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	571	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTCTGTTGTTTG	NA	False	NA	11	True	ATTAAA	-19	NA	77824645	77891801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
transcript_140735.known	chr9	+	2068	6	FSM	ENSMUSG00000023333.9	ENSMUST00000024104.9	2068	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.489897948556636	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGGAAAAGGAAAA	2049	False	NA	NA	False	NA	NA	NA	77959205	77972906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_77959323_77961093_77961274_77966857_77967111_77968629_77968743_77969692_77969822_77971630
transcript_140737.known	chr9	-	2155	13	FSM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	0	0	0	0	multi-exon	FALSE	non_canonical	2	34	junction_11	11.6437274482396	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	78015938	77988780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
transcript_140738.known	chr9	-	1850	13	FSM	ENSMUSG00000001366.15	ENSMUST00000001402.14	1850	13	0	0	0	0	multi-exon	FALSE	non_canonical	2	18	junction_12	15.7920514464996	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTGTGGATGGCCTT	NA	False	NA	0	True	AATAAA	-28	NA	78016347	77988783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78016283
transcript_140743.nic	chr9	-	1807	11	ISM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	-409	4423	0	0	5prime_fragment	FALSE	non_canonical	2	34	junction_9	12.3292335528207	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAGAAGAAGTGAG	NA	False	NA	NA	False	NA	NA	NA	78016347	77993203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
transcript_140747.known	chr9	-	1201	6	FSM	ENSMUSG00000001366.15	ENSMUST00000159099.8	1201	6	0	0	0	0	multi-exon	FALSE	non_canonical	2	34	junction_4	15.3961034031342	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTTTTCATATTGATTT	NA	False	NA	NA	False	AATAAA	-15	NA	78015886	78002794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
transcript_140751.known	chr9	+	2540	14	FSM	ENSMUSG00000009828.16	ENSMUST00000118869.8	2540	14	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	29.6118879054586	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGGTCTCATTATTT	NA	False	NA	3	True	TATAAA	-14	NA	78016473	78075220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_78016764_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
transcript_140753.known	chr9	+	6560	14	FSM	ENSMUSG00000009828.16	ENSMUST00000044551.8	6560	14	0	0	0	0	multi-exon	FALSE	canonical	2	83	junction_12	10.9192842819834	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATTGACTAGAATTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	78020596	78079389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_78020738_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
transcript_140757.nnic	chr9	+	2399	13	NIC	ENSMUSG00000009828.16	novel	6560	14	NA	NA	-67	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	30.9931668096193	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGGTCTCATTATTT	NA	False	NA	3	True	TATAAA	-14	NA	78020455	78075220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_78020738_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
transcript_14076.known	chr10	+	2968	3	FSM	ENSMUSG00000053684.9	ENSMUST00000136432.2	2968	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	61	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTTTCTGGTCAAGCA	NA	False	NA	NA	False	AATAAA	-38	NA	121575842	121588783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_121576116_121581402_121581522_121586207
transcript_140766.known	chr9	-	331	1	FSM	ENSMUSG00002076161.1	ENSMUST00020183253.1	331	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTCCTGCAATTTAAT	NA	False	NA	-1	True	NA	NA	NA	78082915	78082584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_78082600_78082900
transcript_140767.known	chr9	+	1444	4	FSM	ENSMUSG00000097574.3	ENSMUST00000180974.2	1444	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0.471404520791032	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCCTTGGGATTTCTTTT	NA	False	NA	3	True	AATAAA	-14	NA	78083195	78086161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_78083318_78083852_78084025_78084280_78084376_78085106
transcript_140772.known	chr9	+	977	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	2087	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	17	True	ATTAAA	-16	NA	78099228	78116631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
transcript_140780.nic	chr9	-	972	7	NIC	ENSMUSG00000057933.11	novel	870	7	NA	NA	-3906	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	12.0369800568452	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78249940	78238299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78249768
transcript_140781.known	chr9	-	870	7	FSM	ENSMUSG00000057933.11	ENSMUST00000034902.12	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	11.4260910006684	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78254440	78238299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78254370
transcript_140799.known	chr9	-	619	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	0	0	0	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	42653	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275459	78274333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
transcript_1408.nic	chr1	+	3083	13	ISM	ENSMUSG00000026048.17	ENSMUST00000027214.4	3907	15	-119	3014	-16	-3014	5prime_fragment	FALSE	canonical	0	0	junction_3	30.1496268633627	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACGGAAGTTGCAGCTGAC	NA	False	NA	NA	False	NA	NA	NA	44186887	44217406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333
transcript_140801.known	chr9	-	2138	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	917	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGATAAAGCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	78286007	78283390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_78284974_78285256_78285440_78285635
transcript_140803.known	chr9	+	2207	17	FSM	ENSMUSG00000070291.5	ENSMUST00000113367.2	2207	17	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	22.7904002542737	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGTTGAAATTTTTTA	9042	False	NA	2	True	AATAAA	-13	NA	78303058	78330869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_78303409_78306322_78306379_78308130_78308258_78309631_78309764_78313632_78313715_78318873_78319031_78319474_78319594_78320247_78320359_78321024_78321167_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
transcript_14082.known	chr10	-	7711	22	FSM	ENSMUSG00000020121.16	ENSMUST00000020322.12	7711	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	9.24570133614962	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTTTGTCTGCTCGTGAT	NA	False	NA	NA	False	AATAAA	-16	NA	121883213	121616895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_121621681_121628090_121628431_121628559_121628695_121630511_121630693_121636729_121636810_121640720_121640946_121643765_121643872_121658941_121659077_121661320_121661399_121661538_121661600_121664633_121664668_121667789_121667818_121675934_121676020_121676669_121676868_121689553_121689656_121691209_121691432_121705621_121705751_121706232_121706416_121732587_121732651_121761720_121761884_121767218_121767415_121883031
transcript_140824.known	chr9	-	1203	1	FSM	ENSMUSG00000090724.2	ENSMUST00000171096.2	1203	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATGTCTTGACTGTGC	NA	False	NA	NA	False	AATAAA	-16	NA	78303440	78302237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_78302200_78303400
transcript_140825.known	chr9	-	4049	5	FSM	ENSMUSG00000032344.18	ENSMUST00000070742.14	4049	5	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_4	3.56195171219375	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGTAGTTGAATGTATC	5273	False	NA	-8	True	AATAAA	-16	NA	78350486	78337807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_78340550_78341594_78341698_78342722_78342966_78344584_78344805_78349745
transcript_14083.known	chr10	-	7787	22	FSM	ENSMUSG00000020121.16	ENSMUST00000081688.13	7787	22	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_11	7.39093027569169	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTTTGTCTGCTCGTGAT	NA	False	NA	NA	False	AATAAA	-16	NA	121883220	121616895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_121621681_121628090_121628431_121628559_121628695_121630511_121630693_121636729_121636810_121640720_121640946_121643765_121643872_121658941_121659077_121661320_121661399_121661538_121661600_121665131_121665235_121667789_121667818_121675934_121676020_121676669_121676868_121689553_121689656_121691209_121691432_121705621_121705751_121706232_121706416_121732587_121732651_121761720_121761884_121767218_121767415_121883031
transcript_140831.nnic	chr9	+	2320	12	NNC	ENSMUSG00000032342.14	novel	2366	12	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	20.7332527258759	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTAGGTGATTTTACG	NA	False	NA	19	True	AATAAA	-18	NA	78355438	78381434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368877_78372165_78372285_78377912_78378074_78381071
transcript_140832.known	chr9	+	2366	12	FSM	ENSMUSG00000032342.14	ENSMUST00000034896.13	2366	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_9	10.2457409010559	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTAGGTGATTTTACG	NA	False	NA	19	True	AATAAA	-18	NA	78355489	78381434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368974_78372165_78372285_78377912_78378074_78381071
transcript_140839.known	chr9	+	2076	11	FSM	ENSMUSG00000032342.14	ENSMUST00000148238.2	2076	11	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	25.1477633200251	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTAGGTGATTTTACG	NA	False	NA	19	True	AATAAA	-18	NA	78355489	78381434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_78355793_78356700_78356901_78356999_78357118_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368974_78372165_78372285_78377912_78378074_78381071
transcript_140857.known	chr9	-	1794	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	0	0	0	0	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	18470	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTCAATGCTGAAAGT	7100	False	NA	NA	False	ATTAAA	-22	NA	78389006	78385730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
transcript_14088.nic	chr10	-	1312	5	ISM	ENSMUSG00000020121.16	ENSMUST00000081688.13	7787	22	-529	89348	-529	25498	5prime_fragment	FALSE	canonical	3	43	junction_1	1.6583123951777	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGGAAAAGGTAGGTTAG	NA	False	NA	NA	False	AAGAAA	-11	NA	121883749	121706243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_121706416_121732587_121732651_121761720_121761884_121767218_121767415_121883031
transcript_140883.known	chr9	+	961	2	FSM	ENSMUSG00000111417.2	ENSMUST00000214586.2	961	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTATTATATGTAAGT	131	False	NA	NA	False	NA	NA	NA	78427827	78429439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_78428440_78429090
transcript_140884.known	chr9	-	3236	11	FSM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	5.61782876207526	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGTGTTT	NA	False	NA	-1	True	ATTAAA	-19	NA	78495323	78443769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482020_78484311_78484546_78485792_78485990_78495155
transcript_140886.known	chr9	-	659	4	FSM	ENSMUSG00000032330.8	ENSMUST00000034881.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	5621	junction_3	439.918426781855	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTCAGCAGTTGGCA	NA	False	NA	0	True	AATAAA	-16	NA	79667160	79662642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666921
transcript_14089.known	chr10	-	1546	7	FSM	ENSMUSG00000034620.18	ENSMUST00000038772.13	1546	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	137.068920214937	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933061	121917164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932252_121932367_121932804
transcript_140891.known	chr9	-	344	2	FSM	ENSMUSG00000032330.8	ENSMUST00000215452.2	344	2	0	0	0	0	multi-exon	FALSE	canonical	3	5621	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAATTGTGTGTGTGATT	NA	False	NA	NA	False	NA	NA	NA	79666992	79665588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_79665862_79666921
transcript_140893.known	chr9	-	3658	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_2	27.5282682992511	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGTGCTGTTTATGTGTC	NA	False	NA	-9	True	AATAAA	-14	NA	79700712	79676224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
transcript_140900.known	chr9	-	2662	6	FSM	ENSMUSG00000032328.13	ENSMUST00000153815.8	2662	6	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_1	22.8508205541945	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79700712	79679833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
transcript_140903.known	chr9	+	3495	24	FSM	ENSMUSG00000034252.15	ENSMUST00000165607.9	3495	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	90.822246885334	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCATTTACTCTTGGGGG	NA	False	NA	NA	False	NA	NA	NA	79974774	80051188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_79974855_79994711_79994806_79997130_79997189_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
transcript_140905.known	chr9	+	5111	23	FSM	ENSMUSG00000034252.15	ENSMUST00000037484.15	5111	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	105.987768279143	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGCTGCATGTGTAAT	NA	False	NA	NA	False	AATAAA	-19	NA	79974184	80052235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_79974855_79994711_79994806_79997130_79997189_79999548_79999695_80000818_80000924_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
transcript_140907.known	chr9	+	4706	23	FSM	ENSMUSG00000034252.15	ENSMUST00000175999.8	4706	23	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	83.8945126703669	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGTGTTCTCTTTAATTG	NA	False	NA	NA	False	AGTAAA	-14	NA	79974380	80052063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_79974855_79994711_79994806_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
transcript_140912.nic	chr9	+	3745	21	NIC	ENSMUSG00000034252.15	novel	5111	23	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_3	86.9113916584011	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAAAGAGAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	79974157	80050994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_79974855_79999548_79999695_80000818_80000924_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
transcript_140922.nic	chr9	+	1362	9	ISM	ENSMUSG00000034252.15	ENSMUST00000165607.9	3495	24	-617	30153	-27	0	5prime_fragment	FALSE	canonical	0	0	junction_3	113.132389261431	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGTGGAAAAGAAAAAGA	NA	False	NA	4	True	NA	NA	NA	79974157	80021035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_79974855_79994711_79994806_79997130_79997189_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008
transcript_140928.known	chr9	+	1150	7	FSM	ENSMUSG00000034252.15	ENSMUST00000176640.8	1150	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	86.6572110226392	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGTGGAAAAGAAAAAGA	NA	False	NA	4	True	NA	NA	NA	79974217	80021035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_79974855_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008
transcript_140931.known	chr9	+	1916	5	FSM	ENSMUSG00000034252.15	ENSMUST00000175673.2	1916	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	128.61449179622	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTTGCTTTATGTAAT	NA	False	NA	NA	False	ATTAAA	-30	NA	79974184	80001766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_79974855_79994711_79994806_79997130_79997189_79999548_79999695_80000818
transcript_140935.nic	chr9	+	848	3	ISM	ENSMUSG00000034252.15	ENSMUST00000175673.2	1916	5	-27	4579	-27	2407	5prime_fragment	FALSE	canonical	3	190	junction_2	6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAAGTGTTGCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	79974157	79997187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_79974855_79994711_79994806_79997130
transcript_140936.nic	chr9	+	769	2	ISM	ENSMUSG00000034252.15	ENSMUST00000175673.2	1916	5	-27	6983	-27	3	5prime_fragment	FALSE	canonical	3	202	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAAGGAGATGCAGACAAA	NA	False	NA	NA	False	AAGAAA	-1	NA	79974157	79994783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_79974855_79994711
transcript_140938.known	chr9	+	3853	19	FSM	ENSMUSG00000034252.15	ENSMUST00000164859.8	3853	19	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	87.8421880419654	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGATTAATTTGATATTC	NA	False	NA	4	True	AATAAA	-15	NA	79974254	80051450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_79974855_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
transcript_14094.known	chr10	-	4793	6	FSM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	21.4513402844671	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGGTTGTGTATCTAA	NA	False	NA	NA	False	ATTAAA	-13	NA	121933276	121914018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932804
transcript_140940.known	chr9	+	7871	33	FSM	ENSMUSG00000033577.19	ENSMUST00000035889.15	7871	33	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_30	19.7791517449561	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTGTATTGTGTGCTT	4854	False	NA	NA	False	AATAAA	-20	NA	80072312	80219011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_80072512_80124897_80125040_80128299_80128370_80133473_80133548_80136139_80136270_80149446_80149553_80152416_80152473_80152921_80153020_80153676_80153842_80159048_80159130_80162161_80162343_80165694_80165840_80168060_80168219_80169555_80169648_80171473_80171547_80173407_80173536_80176908_80177005_80177275_80177450_80181204_80181244_80183589_80183684_80188742_80188874_80188964_80189043_80190736_80190867_80193012_80193104_80193563_80193715_80195289_80195499_80197147_80197227_80199638_80199800_80206427_80206532_80207816_80207949_80210554_80210582_80214241_80214461_80214953
transcript_140941.nic	chr9	+	3172	27	ISM	ENSMUSG00000033577.19	ENSMUST00000184480.8	4139	36	-249	18204	-53	-2718	5prime_fragment	FALSE	canonical	3	51	junction_13	8.87761962338524	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGAAGAGGAAGAAAGGAA	4801	False	NA	NA	False	NA	NA	NA	80072259	80197175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_80072512_80124897_80125040_80128299_80128370_80133473_80133548_80136139_80136270_80149446_80149553_80152416_80152473_80152921_80153020_80153676_80153842_80159048_80159130_80162161_80162343_80165694_80165840_80168060_80168219_80169555_80169648_80171473_80171547_80173407_80173536_80176908_80177005_80177275_80177450_80181204_80181244_80183589_80183684_80188742_80188874_80188964_80189043_80190736_80190867_80193012_80193104_80193563_80193715_80195289_80195499_80197147
transcript_140942.nic	chr9	+	3086	26	ISM	ENSMUSG00000033577.19	ENSMUST00000184480.8	4139	36	-249	19939	-53	1650	5prime_fragment	FALSE	canonical	3	51	junction_13	8.34016786401809	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAGGCGTGAAGAAGAT	4801	False	NA	NA	False	NA	NA	NA	80072259	80195440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_80072512_80124897_80125040_80128299_80128370_80133473_80133548_80136139_80136270_80149446_80149553_80152416_80152473_80152921_80153020_80153676_80153842_80159048_80159130_80162161_80162343_80165694_80165840_80168060_80168219_80169555_80169648_80171473_80171547_80173407_80173536_80176908_80177005_80177275_80177450_80181204_80181244_80183589_80183684_80188742_80188874_80188964_80189043_80190736_80190867_80193012_80193104_80193563_80193715_80195289
transcript_140944.nic	chr9	+	2693	23	ISM	ENSMUSG00000033577.19	ENSMUST00000184480.8	4139	36	-249	24513	-53	-2924	5prime_fragment	FALSE	canonical	3	51	junction_13	8.57020111242659	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTATTTCCCTCTGGCA	4801	False	NA	NA	False	AAGAAA	-32	NA	80072259	80190866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_80072512_80124897_80125040_80128299_80128370_80133473_80133548_80136139_80136270_80149446_80149553_80152416_80152473_80152921_80153020_80153676_80153842_80159048_80159130_80162161_80162343_80165694_80165840_80168060_80168219_80169555_80169648_80171473_80171547_80173407_80173536_80176908_80177005_80177275_80177450_80181204_80181244_80183589_80183684_80188742_80188874_80188964_80189043_80190736
transcript_140946.known	chr9	+	2991	1	FSM	ENSMUSG00000033577.19	ENSMUST00000183377.2	2991	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4861	False	NA	NA	False	NA	NA	NA	80072319	80075310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_80072300_80075300
transcript_140947.known	chr9	+	638	2	FSM	ENSMUSG00000079225.4	ENSMUST00000055820.7	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	2455	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	81559650	81560730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_81559913_81560354
transcript_140948.known	chr9	+	775	1	FSM	ENSMUSG00000079225.4	ENSMUST00000183511.2	775	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATTGATGAAGAAGGAGAT	NA	False	NA	71	True	NA	NA	NA	81559664	81560439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_81559700_81560400
transcript_140949.known	chr9	+	2670	5	FSM	ENSMUSG00000043289.13	ENSMUST00000057067.10	2670	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	8.4372685153431	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAATAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	81745722	81909079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_81745971_81772174_81772421_81809150_81809687_81861178_81861311_81907571
transcript_14095.nic	chr10	-	1579	6	NIC	ENSMUSG00000034620.18	novel	1546	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_5	112.932546238894	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933075	121917164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932133_121932804
transcript_140955.known	chr9	+	2158	4	FSM	ENSMUSG00000032251.13	ENSMUST00000113245.9	2158	4	0	0	0	0	multi-exon	TRUE	canonical	3	114	junction_3	13.589211407093	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGCGATGTTGATCTCTG	NA	False	NA	4	True	NA	NA	NA	82711592	82729740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_82712393_82719470_82719537_82728351_82728483_82728579
transcript_140960.known	chr9	+	1159	3	FSM	ENSMUSG00000032251.13	ENSMUST00000034783.6	1159	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	54.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTGTATACTGAGAATT	NA	False	NA	NA	False	AATAAA	-14	NA	82711858	82729073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_82712393_82728351_82728483_82728579
transcript_140968.nic	chr9	-	3018	24	NIC	ENSMUSG00000032253.14	novel	3317	25	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	13.8656802518622	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAAAGCCCAAAG	NA	False	NA	NA	False	NA	NA	NA	82857564	82782708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_82782907_82785176_82785254_82787701_82787843_82788993_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82798014_82798078_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_140975.nic	chr9	-	3220	23	ISM	ENSMUSG00000032253.14	ENSMUST00000188868.7	3317	25	-368	6625	-260	0	5prime_fragment	FALSE	canonical	3	34	junction_11	7.22484235865655	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAAAGCCCAAAG	NA	False	NA	NA	False	NA	NA	NA	82857829	82782708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_82782907_82785176_82785254_82787701_82787843_82788993_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_140983.nic	chr9	-	2522	20	ISM	ENSMUSG00000032253.14	ENSMUST00000188868.7	3317	25	-103	12927	5	-3515	5prime_fragment	FALSE	canonical	3	34	junction_8	7.45066878702585	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTACTGTCTCAAAGGTA	NA	False	NA	69	True	AATAAA	-2	NA	82857564	82789010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_140984.nic	chr9	-	2444	20	ISM	ENSMUSG00000032253.14	ENSMUST00000188868.7	3317	25	-109	13011	-1	-3599	5prime_fragment	FALSE	canonical	3	34	junction_8	7.45066878702585	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTGCAAAGGGAGAAGAG	NA	False	NA	-15	True	NA	NA	NA	82857570	82789094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_140988.nic	chr9	-	1486	14	ISM	ENSMUSG00000032253.14	ENSMUST00000187021.7	2623	17	-85	14079	5	0	5prime_fragment	FALSE	canonical	3	34	junction_2	7.65993186738745	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAATGAAAGTAACTAT	NA	False	NA	NA	False	NA	NA	NA	82857564	82809210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_140991.known	chr9	-	1979	7	FSM	ENSMUSG00000032253.14	ENSMUST00000188828.7	1979	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	5.67646212197547	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAATTTAAAAAAAGAGG	NA	False	NA	NA	False	AAGAAA	-14	NA	82857469	82826556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_140992.known	chr9	-	10756	40	FSM	ENSMUSG00000032253.14	ENSMUST00000034787.12	10756	40	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_28	10.5485322148115	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTCTACTTAGAACAG	NA	False	NA	NA	False	AATAAA	-17	NA	82857569	82748211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_82753915_82757342_82757541_82758061_82758322_82758778_82758943_82759242_82759396_82762164_82762315_82763373_82763425_82763722_82763793_82766885_82767012_82768674_82768796_82769566_82769723_82772166_82772229_82772413_82772526_82775375_82775459_82775577_82775703_82776286_82776395_82778074_82778195_82782674_82782907_82785176_82785254_82787701_82787843_82788993_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_140993.known	chr9	-	983	6	FSM	ENSMUSG00000066456.15	ENSMUST00000162246.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	12.1556571192182	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028738	82992000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_82992483_82993045_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
transcript_140994.known	chr9	-	862	6	FSM	ENSMUSG00000066456.15	ENSMUST00000161796.9	862	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.24179461373089	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028658	82992000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_82992483_82993086_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
transcript_140995.known	chr9	-	1391	5	FSM	ENSMUSG00000066456.15	ENSMUST00000185315.7	1391	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	4.7169905660283	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028583	82992000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
transcript_141002.known	chr9	+	467	1	FSM	ENSMUSG00000058838.10	ENSMUST00000078766.10	467	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGTGTATGCGTTAAT	NA	False	NA	NA	False	NA	NA	NA	83291712	83292179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_83291700_83292200
transcript_141003.known	chr9	-	4160	8	FSM	ENSMUSG00000032258.16	ENSMUST00000034791.15	4160	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_7	8.75051018920774	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGATCCTTTATTTGAAT	NA	False	NA	-5	True	AATAAA	-14	NA	83323080	83275471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83322961
transcript_141004.known	chr9	-	1728	3	FSM	ENSMUSG00000032258.16	ENSMUST00000190373.2	1728	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	9	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAATCCCTT	NA	False	NA	NA	False	AGTAAA	-12	NA	83323146	83304299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_83305606_83308645_83309015_83323093
transcript_141005.known	chr9	+	4565	4	FSM	ENSMUSG00000032261.17	ENSMUST00000113215.10	4565	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	12.4988888395018	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTTATTTTTCCTTC	NA	False	NA	9	True	AATAAA	-16	NA	83430380	83483399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_83430557_83459488_83459675_83476710_83476792_83479277
transcript_141007.known	chr9	+	683	1	FSM	ENSMUSG00000032261.17	ENSMUST00000188617.2	683	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGTTTGTCGAGTGTT	NA	False	NA	NA	False	AATAAA	-21	NA	83430381	83431064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_83430400_83431100
transcript_141008.known	chr9	-	3001	6	FSM	ENSMUSG00000032262.14	ENSMUST00000034796.14	3001	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	3.49857113690718	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCCGTCGTTGATTTG	NA	False	NA	1	True	AATAAA	-26	NA	83688305	83660744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_83662863_83665188_83665317_83667087_83667260_83670321_83670403_83672029_83672218_83687991
transcript_141012.nnic	chr9	+	3032	23	NNC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	74.5741768391691	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716691	83754439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83726402_83726485_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
transcript_141015.known	chr9	+	2871	22	FSM	ENSMUSG00000038379.16	ENSMUST00000070326.14	2871	22	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.5493373131652	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716770	83754439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
transcript_141019.known	chr9	+	2711	21	FSM	ENSMUSG00000038379.16	ENSMUST00000188445.7	2711	21	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.9819584732735	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGTCTCGACAACATT	NA	False	NA	0	True	AATAAA	-15	NA	83716741	83751546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235
transcript_141027.nic	chr9	+	2169	18	ISM	ENSMUSG00000038379.16	ENSMUST00000188445.7	2711	21	-50	4354	-50	-4354	5prime_fragment	FALSE	canonical	3	211	junction_10	14.8522131446501	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCGAAAATCAGGACCAAGG	NA	False	NA	NA	False	NA	NA	NA	83716691	83747192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130
transcript_141029.known	chr9	+	1791	2	FSM	ENSMUSG00000038379.16	ENSMUST00000189727.2	1791	2	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTTAATGATGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83716786	83719588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_83716813_83717823
transcript_141031.known	chr9	+	1472	11	FSM	ENSMUSG00000032263.15	ENSMUST00000034801.11	1472	11	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_3	45.3898667105335	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTGTGTGTGTGTCCTCT	NA	False	NA	NA	False	AATAAA	-19	NA	83807202	84006292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_83807413_83834576_83834655_83835765_83835835_83870828_83870963_83871193_83871350_83873766_83873876_83892306_83892405_83894561_83894673_83951157_83951245_84004286_84004436_84006021
transcript_141042.nic	chr9	+	3055	3	ISM	ENSMUSG00000032263.15	ENSMUST00000190637.7	1477	11	-2	167767	-2	-167726	5prime_fragment	FALSE	canonical	3	668	junction_1	14	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAACAAACATACAAAAATC	NA	False	NA	NA	False	NA	NA	NA	83807195	83838525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_83807413_83834576_83834655_83835765
transcript_141043.known	chr9	+	798	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7356	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTACACTGAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	84306036	84306834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_84306000_84306800
transcript_141044.known	chr9	-	5650	29	FSM	ENSMUSG00000035941.16	ENSMUST00000039213.15	5650	29	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_19	26.8952047922362	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTAGCGTGTGTTTG	NA	False	NA	-7	True	AATAAA	-16	NA	85631387	85569412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
transcript_141047.known	chr9	-	5290	28	FSM	ENSMUSG00000035941.16	ENSMUST00000187521.7	5290	28	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_18	46.0379458210114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTTCAGTCTGTAGA	NA	False	NA	-10	True	ATTAAA	-18	NA	85631387	85569594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
transcript_141048.nic	chr9	-	4104	25	ISM	ENSMUSG00000035941.16	ENSMUST00000039213.15	5650	29	-33	15727	-33	5081	5prime_fragment	FALSE	canonical	3	145	junction_15	20.7163381577601	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATTCAGGAACGAACAGCA	NA	False	NA	NA	False	AAGAAA	-2	NA	85631420	85585139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
transcript_141050.nic	chr9	-	3993	24	ISM	ENSMUSG00000035941.16	ENSMUST00000039213.15	5650	29	-33	16330	-33	4478	5prime_fragment	FALSE	canonical	3	145	junction_14	21.1616337932947	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACAGAAATATGGCGCAG	NA	False	NA	NA	False	AAGAAA	-2	NA	85631420	85585742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
transcript_141053.nic	chr9	-	2840	13	ISM	ENSMUSG00000035941.16	ENSMUST00000039213.15	5650	29	-33	32558	-33	265	5prime_fragment	FALSE	canonical	3	145	junction_3	21.4954775605371	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATGTTATTGCGAAGAAA	NA	False	NA	NA	False	AATGAA	-5	NA	85631420	85601970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_85602003_85602796_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
transcript_141054.known	chr9	-	3316	12	FSM	ENSMUSG00000035941.16	ENSMUST00000185353.2	3316	12	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	21.3212345168453	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAAAAAGACTGTT	NA	False	NA	NA	False	NA	NA	NA	85631367	85602235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
transcript_141057.known	chr9	+	409	2	FSM	ENSMUSG00000035274.14	ENSMUST00000185559.2	409	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTCGAGTCTTCGGAGCGG	NA	False	NA	NA	False	NA	NA	NA	85725413	85725978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_85725548_85725703
transcript_141059.known	chr9	+	3481	2	FSM	ENSMUSG00000035274.14	ENSMUST00000098500.5	3481	2	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCTCAGGTTATGAAGCT	NA	False	NA	NA	False	AATAAA	-30	NA	85724917	85729093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_85725009_85725703
transcript_14106.known	chr10	+	6369	10	FSM	ENSMUSG00000034613.13	ENSMUST00000067918.12	6369	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.6428327977153	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTGGGTTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	122514686	122781700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_122515336_122618087_122618251_122638139_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
transcript_141060.known	chr9	-	1790	10	FSM	ENSMUSG00000032415.15	ENSMUST00000034986.14	1790	10	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_5	4.12160822022031	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTCTTTTGTTCTTTAT	NA	False	NA	0	True	ATTAAA	-26	NA	86347003	86189358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_86189930_86254393_86254533_86304893_86305058_86307314_86307424_86309420_86309491_86317336_86317407_86322638_86322808_86330815_86330907_86333866_86334064_86346793
transcript_141065.known	chr9	-	2666	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGTGTGTTTTAAGT	NA	False	NA	NA	False	AAAAAG	-12	NA	86453880	86436429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
transcript_141068.known	chr9	-	2116	12	FSM	ENSMUSG00000056131.14	ENSMUST00000186193.7	2116	12	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_6	45.4649079097238	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGGCAATGACTATGTG	NA	False	NA	NA	False	GATAAA	-12	NA	86453846	86437733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
transcript_141073.known	chr9	+	1054	3	FSM	ENSMUSG00000032417.11	ENSMUST00000185566.7	1054	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	7	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTCTGGGTGAAAAACC	NA	False	NA	NA	False	AATAAA	-18	NA	86454043	86456786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_86454111_86454889_86455117_86456026
transcript_141074.known	chr9	-	3288	14	FSM	ENSMUSG00000032418.16	ENSMUST00000034989.15	3288	14	0	0	0	0	multi-exon	TRUE	canonical	3	250	junction_5	30.9913139195733	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTAAATGTCATTTTTT	9610	False	NA	NA	False	ATTAAA	-20	NA	86578006	86463423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_86464961_86469015_86469115_86476496_86476671_86478108_86478252_86480771_86480878_86493905_86494020_86495593_86495692_86501777_86501888_86528363_86528468_86532920_86533083_86536695_86536772_86559916_86560067_86561871_86562006_86577725
transcript_141084.known	chr9	+	3444	2	FSM	ENSMUSG00000033491.14	ENSMUST00000036426.13	3444	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTACTGTGTTTGTATA	NA	False	NA	4	True	AATAAA	-19	NA	86625701	86640496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_86625860_86637210
transcript_14109.known	chr10	+	2931	9	FSM	ENSMUSG00000034613.13	ENSMUST00000161487.8	2931	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.3389626792531	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAGAAAATATGATC	NA	False	NA	NA	False	NA	NA	NA	122514682	122757879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_122515336_122618087_122618251_122638139_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598
transcript_141097.known	chr9	+	2644	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGGGACTAGGTGTGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	86904066	86959827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
transcript_14111.nnic	chr10	+	2441	9	NNC	ENSMUSG00000034613.13	novel	750	7	NA	NA	-18423	1091	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	9.86708543593294	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTCATTGTGATGTTCC	1873	False	NA	NA	False	ATTAAA	-17	NA	122628725	122778445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_122628865_122638139_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
transcript_141114.known	chr9	-	7685	27	FSM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_14	9.30228705097291	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGAGTTTTGTGTTTAT	NA	False	NA	NA	False	AATACA	-18	NA	87137589	87071629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_87074976_87075625_87075761_87082033_87082133_87083750_87083893_87085693_87086338_87088895_87089109_87092849_87092955_87093709_87093874_87094904_87095032_87099120_87099227_87100557_87100671_87102503_87102645_87103150_87103379_87104096_87104228_87107731_87107994_87109206_87109481_87113430_87113513_87114031_87114224_87119885_87120003_87120406_87120438_87121867_87121987_87126330_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
transcript_141128.known	chr9	-	4679	8	FSM	ENSMUSG00000032419.9	ENSMUST00000034991.8	4679	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.29362644830535	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGTCTTGGAGTGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	87613313	87584852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_87587999_87589819_87589915_87595550_87595616_87597575_87597744_87606354_87606527_87609416_87609519_87611513_87611719_87612587
transcript_141129.known	chr9	-	3082	29	FSM	ENSMUSG00000032422.19	ENSMUST00000174806.9	3082	29	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_14	53.7773542165344	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTAGGTATTACGGCC	NA	False	NA	-19	True	AATAAA	-23	NA	88320967	88258819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88282775_88282803_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
transcript_14113.known	chr10	-	758	1	FSM	ENSMUSG00000112237.2	ENSMUST00000220378.2	758	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGTGTTTTTGTTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	122821736	122820978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_122821000_122821700
transcript_141131.known	chr9	-	3109	28	FSM	ENSMUSG00000032422.19	ENSMUST00000165315.9	3109	28	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_13	28.9754164757839	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGTATTTACTGTCT	NA	False	NA	-2	True	AATAAA	-40	NA	88321004	88258802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
transcript_141141.known	chr9	-	3404	12	FSM	ENSMUSG00000032423.13	ENSMUST00000174282.8	3404	12	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_1	221.053263840518	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGGCGAGTGTAACTT	NA	False	NA	-15	True	AATAAA	-18	NA	88364249	88334741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88336346_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
transcript_141143.known	chr9	-	6257	11	FSM	ENSMUSG00000032423.13	ENSMUST00000174391.8	6257	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	258.93213396564	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGGAGTCCAAGAATT	NA	False	NA	-16	True	AATAAA	-28	NA	88364301	88331783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88364108
transcript_141144.known	chr9	-	2944	11	FSM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	62.6802201655355	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTTACAATTCGTTTT	NA	False	NA	NA	False	AATAAA	-34	NA	88364608	88337630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
transcript_141150.nic	chr9	-	1809	10	ISM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	-46	6121	-27	2902	5prime_fragment	FALSE	canonical	3	754	junction_3	65.6293370113032	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTCAGAGGCAAGCAGCAAA	NA	False	NA	18	True	AAGAAA	-6	NA	88364654	88343751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
transcript_141152.nic	chr9	-	1349	9	ISM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	322	6657	15	2366	5prime_fragment	FALSE	canonical	3	754	junction_2	68.8639963986988	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAAGTTGTAGACATTC	NA	False	NA	NA	False	NA	NA	NA	88364286	88344287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
transcript_141155.nic	chr9	-	1412	8	ISM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	-46	7531	-27	1492	5prime_fragment	FALSE	canonical	3	754	junction_1	73.4452454664878	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTTTGCTTTCTTG	NA	False	NA	NA	False	AAGAAA	-6	NA	88364654	88345161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
transcript_141159.known	chr9	+	481	1	FSM	ENSMUSG00000066443.6	ENSMUST00000155008.2	481	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2517	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGTACACAAAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	88272889	88273370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_88272900_88273400
transcript_141160.known	chr9	-	1925	11	FSM	ENSMUSG00000032423.13	ENSMUST00000172828.8	1925	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	353.000906514417	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAAGTAGATTTTTCC	NA	False	NA	-1	True	AATAAA	-28	NA	88364202	88335990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359152_88359241_88361623_88361732_88361846_88361966_88364108
transcript_141161.known	chr9	-	826	6	FSM	ENSMUSG00000097195.11	ENSMUST00000182232.9	826	6	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	292.278634183205	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88405027	88403102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404640_88404903
transcript_141162.known	chr9	-	809	6	FSM	ENSMUSG00000097195.11	ENSMUST00000239365.2	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	430.698688180032	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404970	88403104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
transcript_141163.known	chr9	-	1678	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88405615	88403102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
transcript_141166.known	chr9	-	939	5	FSM	ENSMUSG00000097195.11	ENSMUST00000183045.3	939	5	0	0	0	0	multi-exon	FALSE	canonical	3	588	junction_4	231.258918746932	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403502_88403702_88404029_88404359_88404435_88404536_88404640_88404903
transcript_141167.nic	chr9	-	709	5	NIC	ENSMUSG00000097195.11	novel	826	6	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_1	309.579553588411	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404982	88403107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404640_88404903
transcript_141169.known	chr9	-	1408	4	FSM	ENSMUSG00000097195.11	ENSMUST00000190033.4	1408	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	320.936476926856	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88405016	88403104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404435_88404536
transcript_14117.known	chr10	-	5302	34	FSM	ENSMUSG00000034602.16	ENSMUST00000170935.9	5302	34	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_22	24.7608209734668	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAAATTAAAGTGTAATT	NA	False	NA	NA	False	NA	NA	NA	122911930	122831465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_122831739_122835563_122835647_122838600_122838809_122841916_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122846398_122846543_122849272_122849896_122850845_122851045_122852167_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122859814_122859917_122861984_122862076_122862158_122862233_122862311_122862393_122862813_122862919_122865037_122865151_122866014_122866200_122866944_122867030_122868427_122868655_122870209_122870364_122871372_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
transcript_141173.nic	chr9	-	941	4	NIC	ENSMUSG00000097195.11	novel	1678	5	NA	NA	-6	0	intron_retention	FALSE	canonical	3	461	junction_1	319.66545011934	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404950	88403107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536
transcript_141175.known	chr9	-	1534	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239278.2	1534	3	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	178	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403502_88403702_88404435_88404536
transcript_141177.known	chr9	-	1533	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239284.2	1533	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	392.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404943	88403107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403770_88403970_88404435_88404536
transcript_141180.known	chr9	-	1781	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239253.2	1781	2	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	-14	True	AATAAA	-33	NA	88404992	88403109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88404435_88404536
transcript_141181.known	chr9	-	442	2	FSM	ENSMUSG00000097195.11	ENSMUST00000182517.3	442	2	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404018	88403107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403502_88403970
transcript_141182.known	chr9	-	1437	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239344.2	1437	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	214.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404943	88403104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403502_88403702_88403770_88403970
transcript_141183.known	chr9	-	1623	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239379.2	1623	2	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404942	88403118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403770_88403970
transcript_141184.known	chr9	-	1636	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239219.2	1636	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88403502_88403702
transcript_141198.known	chr9	-	725	4	FSM	ENSMUSG00000079427.11	ENSMUST00000186863.7	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	219.136182924378	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTTGTCAAAATGAATCA	NA	False	NA	NA	False	NA	NA	NA	88601640	88570744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88571039_88597540_88597803_88598546_88598617_88601541
transcript_141200.nnic	chr9	-	808	3	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	-67	0	combination_of_known_splicesites	FALSE	canonical	3	156	junction_2	185.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601707	88570658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_88571039_88597540_88597803_88601541
transcript_141201.known	chr9	-	801	3	FSM	ENSMUSG00000079427.11	ENSMUST00000113110.5	801	3	0	0	0	0	multi-exon	TRUE	canonical	3	319	junction_2	104	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATCAATAGAAATTATT	NA	False	NA	NA	False	AATAAA	-20	NA	88601866	88570654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88571039_88597540_88597803_88601711
transcript_141202.known	chr9	-	602	5	FSM	ENSMUSG00000097177.9	ENSMUST00000181448.3	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	50.4746223363781	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGGTTATGAGCCATT	NA	False	NA	NA	False	TATAAA	-28	NA	88740923	88739284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740861
transcript_141206.known	chr9	-	1044	5	FSM	ENSMUSG00000097177.9	ENSMUST00000180783.8	1044	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	55.97097462078	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAAAAAATGGGG	NA	False	NA	NA	False	NA	NA	NA	88740854	88725562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88726320_88739866_88739925_88740278_88740354_88740442_88740498_88740755
transcript_141208.known	chr9	-	1826	7	FSM	ENSMUSG00000079162.9	ENSMUST00000189557.2	1826	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	88974743	88966964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_88967770_88969581_88969683_88970351_88970375_88971413_88971645_88972645_88972742_88973320_88973736_88974588
transcript_141211.known	chr9	+	705	4	FSM	ENSMUSG00000066442.18	ENSMUST00000117314.8	705	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	167.420296127905	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACATATGTATATTTT	NA	False	NA	NA	False	NA	NA	NA	89093435	89122168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_89093535_89096464_89096535_89097261_89097524_89121894
transcript_141212.known	chr9	+	1406	4	FSM	ENSMUSG00000066442.18	ENSMUST00000187362.2	1406	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	184.790572150084	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGTATAAAAATAAAATAAT	NA	False	NA	NA	False	ATTAAA	-22	NA	89093463	89122244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_89093535_89094586_89095310_89097261_89097524_89121894
transcript_141214.known	chr9	+	816	3	FSM	ENSMUSG00000066442.18	ENSMUST00000085256.8	816	3	0	0	0	0	multi-exon	TRUE	canonical	3	175	junction_1	109	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAGAATATTAATGCAA	NA	False	NA	NA	False	AATAAA	-35	NA	89093209	89122293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_89093365_89097261_89097524_89121894
transcript_141215.nic	chr9	+	802	3	NIC	ENSMUSG00000066442.18	novel	1406	4	NA	NA	-91	0	combination_of_known_junctions	FALSE	canonical	3	83	junction_1	155	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGTATAAAAATAAAATAAT	NA	False	NA	NA	False	ATTAAA	-22	NA	89093344	89122244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_89093535_89097261_89097524_89121894
transcript_141216.known	chr9	-	1346	3	FSM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	7.5	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGGAGTGATGTGTGC	NA	False	NA	-12	True	AATAAA	-14	NA	89587121	89581258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_89582033_89584824_89585074_89586798
transcript_141217.known	chr9	+	1617	12	FSM	ENSMUSG00000032359.15	ENSMUST00000034915.15	1617	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.46648653907957	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGCGTAGGTCTCTAAC	NA	False	NA	6	True	AATAAA	-18	NA	89936319	89958142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_89936688_89942531_89942564_89943571_89943678_89944769_89944841_89946205_89946311_89946559_89946647_89947444_89947501_89949079_89949162_89950457_89950527_89953871_89953979_89956920_89957047_89957734
transcript_141219.known	chr9	-	1882	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996768	89973717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
transcript_14122.known	chr10	-	9301	36	FSM	ENSMUSG00000034602.16	ENSMUST00000073792.11	9301	36	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	46.8143881597903	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGAGTGGTGCTTTTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	122912410	122827964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_122831739_122835563_122835647_122838600_122838809_122841916_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122845817_122845836_122846398_122846543_122849272_122849896_122850845_122851045_122852167_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122858990_122858994_122859814_122859917_122861984_122862076_122862158_122862233_122862311_122862393_122862813_122862919_122865037_122865151_122866014_122866200_122866944_122867027_122868427_122868655_122870209_122870364_122871372_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
transcript_141224.known	chr9	-	1824	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	0	0	0	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	2606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996827	89973717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
transcript_14123.nic	chr10	-	3354	24	ISM	ENSMUSG00000034602.16	ENSMUST00000037557.9	5511	34	-356	21180	2	1546	5prime_fragment	FALSE	canonical	3	100	junction_12	19.7302220848136	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGGGAAACGATTGAAAAA	NA	False	NA	NA	False	AATATA	-20	NA	122912286	122852433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122859814_122859917_122861984_122862076_122862158_122862233_122862311_122862393_122862813_122862919_122865037_122865151_122866014_122866200_122866944_122867027_122868427_122868655_122870209_122870364_122871372_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
transcript_141234.nic	chr9	-	595	6	ISM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	-24	8787	5	1459	5prime_fragment	FALSE	canonical	3	323	junction_3	3129.7205370448	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGAAGTGTAAGATTCTC	NA	False	NA	NA	False	GGGGCT	-39	NA	89996792	89982504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
transcript_141236.known	chr9	-	603	6	FSM	ENSMUSG00000062270.15	ENSMUST00000188905.7	603	6	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_5	2557.70339171687	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAGAACAAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	89996582	89979938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996266
transcript_141237.nic	chr9	-	466	5	ISM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	47	8787	-12	1459	5prime_fragment	FALSE	canonical	3	6220	junction_1	349.273800191197	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGAAGTGTAAGATTCTC	NA	False	NA	NA	False	GGGGCT	-39	NA	89996780	89982504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
transcript_141238.known	chr9	-	666	4	FSM	ENSMUSG00000062270.15	ENSMUST00000189241.2	666	4	0	0	0	0	multi-exon	FALSE	canonical	3	6344	junction_1	302.711083378194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTGTTGGAAATTCTAG	NA	False	NA	NA	False	NA	NA	NA	89996663	89983963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_89984440_89989287_89989356_89992178_89992226_89996588
transcript_141239.known	chr9	-	2584	2	FSM	ENSMUSG00000062270.15	ENSMUST00000185433.2	2584	2	0	0	0	0	multi-exon	FALSE	canonical	3	6848	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAAATAGCTTTCAT	NA	False	NA	NA	False	AATATA	-20	NA	89996636	89989689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_89992226_89996588
transcript_141240.known	chr9	+	4833	25	FSM	ENSMUSG00000032363.16	ENSMUST00000147250.8	4833	25	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_18	7.86065713255295	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCACGGTGGCAGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	90045254	90082043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90075077_90075919_90076095_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
transcript_141241.known	chr9	+	5379	24	FSM	ENSMUSG00000032363.16	ENSMUST00000113059.8	5379	24	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_18	7.29502510649195	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGGTTTGGCCTTGTCTT	NA	False	NA	5	True	CATAAA	-19	NA	90045121	90082153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90074951_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
transcript_141242.known	chr9	+	5098	24	FSM	ENSMUSG00000032363.16	ENSMUST00000113060.3	5098	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_18	7.51406997818433	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTGGCCTTGTCTTTG	NA	False	NA	7	True	CATAAA	-21	NA	90045278	90082155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90075077_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
transcript_141248.known	chr9	-	5956	13	FSM	ENSMUSG00000037410.14	ENSMUST00000041767.14	5956	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	8.96714682729251	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAAGCCTCTACGTGGTC	NA	False	NA	0	True	NA	NA	NA	90152822	90084079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_90087276_90089825_90089948_90091720_90091907_90097530_90097649_90100712_90101208_90104359_90104554_90105491_90105603_90108073_90108458_90109382_90109628_90110990_90111155_90123062_90123232_90131843_90131998_90152404
transcript_14125.known	chr10	-	1844	10	FSM	ENSMUSG00000034602.16	ENSMUST00000219203.2	1844	10	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	13.8884444373331	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAACTGTATGTGTTTATA	NA	False	NA	NA	False	TATAAA	-43	NA	122912288	122871192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541_122887674_122888089_122888218_122895092_122895157_122911756
transcript_141254.nic	chr9	-	2287	4	ISM	ENSMUSG00000037410.14	ENSMUST00000144348.8	655	5	-4	-1458	-4	1458	intron_retention	FALSE	canonical	3	61	junction_1	8.60232526704263	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTTATTTTTAAATATAG	NA	False	NA	NA	False	NA	NA	NA	90152861	90109647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_90111155_90123062_90123232_90131843_90131998_90152404
transcript_141256.known	chr9	-	3473	3	FSM	ENSMUSG00000037410.14	ENSMUST00000128874.3	3473	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGTTCTTCAGACATAA	NA	False	NA	NA	False	AATAAA	-18	NA	90152824	90120332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_90123232_90131843_90131998_90152404
transcript_141258.known	chr9	+	2302	9	FSM	ENSMUSG00000032369.14	ENSMUST00000093801.10	2302	9	0	0	0	0	multi-exon	FALSE	canonical	1	104	junction_4	78.1135991681346	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTTTGGCTCCTGTATT	NA	False	NA	NA	False	TATAAA	-23	NA	92131802	92154331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_92132414_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
transcript_141259.known	chr9	+	1471	9	FSM	ENSMUSG00000032369.14	ENSMUST00000186364.2	1471	9	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	116.228223766863	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGAGTTGATGTTACT	NA	False	NA	NA	False	NA	NA	NA	92132394	92154028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_92132478_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
transcript_141262.known	chr9	+	3663	20	FSM	ENSMUSG00000032374.15	ENSMUST00000160359.2	3663	20	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_13	23.4907891420283	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAACATTGTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	92424316	92490473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92484037_92484101_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
transcript_141264.known	chr9	+	3649	19	FSM	ENSMUSG00000032374.15	ENSMUST00000070522.14	3649	19	0	0	0	0	multi-exon	TRUE	canonical	3	58	junction_10	9.44264688775947	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGCCTCTCTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	92424275	92490481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
transcript_141268.known	chr9	-	3950	3	FSM	ENSMUSG00000045414.8	ENSMUST00000113028.2	3950	3	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCTACTCTGTCTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	94420134	94399916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_94402700_94406444_94406749_94419271
transcript_141269.known	chr9	-	3111	28	FSM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	167.860448931548	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTATATTTCTAAGATGCTG	8302	False	NA	NA	False	CATAAA	-25	NA	95393938	95343457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_14127.known	chr10	-	11525	22	FSM	ENSMUSG00000020124.11	ENSMUST00000220377.2	11525	22	0	0	0	0	multi-exon	TRUE	canonical	3	236	junction_15	99.6636747895759	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTATATCTGTACATTTA	NA	False	NA	NA	False	AATAAA	-29	NA	123032900	122940910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_141273.known	chr9	-	3520	27	FSM	ENSMUSG00000032407.15	ENSMUST00000078374.13	3520	27	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	216.387107234962	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTTGTTTTTTTGCCC	8191	False	NA	-1	True	AATAAA	-17	NA	95394049	95343030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
transcript_141275.known	chr9	-	3231	27	FSM	ENSMUSG00000032407.15	ENSMUST00000191213.7	3231	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	230.683894478131	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAATGGTTTTTTTTTTC	8192	False	NA	NA	False	NA	NA	NA	95394048	95343406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_141278.nic	chr9	-	3045	26	ISM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	-312	3020	-201	-3020	5prime_fragment	FALSE	canonical	0	0	junction_11	173.075641267048	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAATCTCGATCCAAAGA	7990	False	NA	NA	False	NA	NA	NA	95394250	95346477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_141281.nic	chr9	-	2913	25	NIC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	-201	-3020	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	209.706673448627	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAATCTCGATCCAAAGA	7990	False	NA	NA	False	NA	NA	NA	95394250	95346477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
transcript_141287.nic	chr9	-	2796	25	ISM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	-119	5140	-8	-5140	5prime_fragment	FALSE	canonical	0	0	junction_10	176.320725565343	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAATGCCTGTATTCAG	8183	False	NA	NA	False	GATAAA	-14	NA	95394057	95348597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_14129.known	chr10	-	4666	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_15	80.7788802843912	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTCTTTTATTTCTTA	NA	False	NA	-1	True	AATAAA	-16	NA	123032858	122947640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_141297.nic	chr9	-	2441	23	ISM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	-36	13016	-27	3607	5prime_fragment	FALSE	canonical	0	0	junction_8	182.700088434707	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAATCTTGAGTTTCAG	8266	False	NA	19	True	NA	NA	NA	95393974	95356473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_1413.known	chr1	+	3138	11	FSM	ENSMUSG00000056870.10	ENSMUST00000074525.10	3138	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	3.104834939252	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGATATGCTCACTTA	NA	False	NA	NA	False	AATAAA	-20	NA	44590670	44835998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_44591033_44728303_44728376_44747776_44747839_44783633_44783706_44793502_44793602_44805173_44805312_44812430_44812548_44813212_44813306_44820127_44820267_44827607_44827703_44834109
transcript_141321.nic	chr9	-	728	7	ISM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	-80	30933	30	770	5prime_fragment	FALSE	canonical	3	575	junction_1	112.375363057132	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAACTAAAACAGTAAGT	8222	False	NA	NA	False	AAAAAG	-42	NA	95394018	95374390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_141325.nic	chr9	-	739	6	ISM	ENSMUSG00000032407.15	ENSMUST00000191213.7	3231	27	-45	31754	-44	0	5prime_fragment	FALSE	canonical	3	752	junction_1	76.6237561073588	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAACCCGTAAGTCATT	8147	False	NA	NA	False	AATGAA	-30	NA	95394093	95375160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_141328.nic	chr9	-	470	5	ISM	ENSMUSG00000032407.15	ENSMUST00000078374.13	3520	27	93	32130	-9	0	5prime_fragment	FALSE	canonical	3	149	junction_3	304.142544705603	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAACCCGTAAGTCATT	8284	False	NA	NA	False	AATGAA	-30	NA	95393956	95375160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
transcript_141332.known	chr9	-	650	2	FSM	ENSMUSG00000032407.15	ENSMUST00000186076.2	650	2	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATTTATTTATTTATTC	8302	False	NA	NA	False	NA	NA	NA	95393938	95384056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_95384638_95393869
transcript_141334.known	chr9	-	2846	1	FSM	ENSMUSG00000032407.15	ENSMUST00000188017.2	2846	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTTATTTTGCCA	8308	False	NA	NA	False	TATAAA	-15	NA	95393932	95391086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_95391100_95393900
transcript_141336.known	chr9	+	4438	9	FSM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_3	14.5982661641717	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCACATAATACCAATTTT	8375	False	NA	NA	False	TTTAAA	-4	NA	95519653	95580149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563723_95568738_95568894_95574913_95574998_95576676_95576845_95577018
transcript_141341.known	chr9	-	3704	16	FSM	ENSMUSG00000049493.14	ENSMUST00000093800.9	3704	16	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	11.5231168623	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTATTTCATTTAA	NA	False	NA	2	True	AATAAA	-19	NA	95727339	95634694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_95636491_95636713_95636839_95643365_95643490_95643986_95644121_95647743_95647859_95651146_95651226_95655570_95655767_95657360_95657457_95658518_95658662_95658741_95658908_95664422_95664505_95666152_95666286_95667542_95667673_95668985_95669150_95677814_95677920_95727223
transcript_141347.known	chr9	+	10256	42	FSM	ENSMUSG00000032410.14	ENSMUST00000185633.7	10256	42	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_40	10.3589359987776	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGCTGCTTTGCTTGTCT	NA	False	NA	25	True	ATTAAA	-25	NA	95836819	95939856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576_95893713_95899803_95899861_95900099_95900233_95903858_95903929_95906074_95906274_95908890_95908987_95915637_95915747_95917687_95917750_95920671_95920783_95920931_95921055_95921752_95921898_95927538_95927715_95929835_95929950_95930393_95930497_95933646_95933808_95934565
transcript_141349.nic	chr9	+	2463	20	ISM	ENSMUSG00000032410.14	ENSMUST00000189612.7	3357	21	-87	2047	-15	-2047	5prime_fragment	FALSE	canonical	3	38	junction_14	7.6632735676637	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGTCATGAGGACGTG	NA	False	NA	NA	False	GATAAA	-45	NA	95836797	95880400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268
transcript_141356.nic	chr9	+	491	3	ISM	ENSMUSG00000032410.14	ENSMUST00000189612.7	3357	21	-87	32624	-15	0	5prime_fragment	FALSE	canonical	3	56	junction_1	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACAGAAGCCAGATTCGAT	NA	False	NA	NA	False	ATTAAA	-29	NA	95836797	95849823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_95836997_95846023_95846257_95849764
transcript_141357.known	chr9	+	8056	47	FSM	ENSMUSG00000032409.16	ENSMUST00000034980.9	8056	47	0	0	0	0	multi-exon	TRUE	canonical	3	80	junction_14	23.1390654868948	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTAGTAATCTGAAATC	NA	False	NA	9	True	AATAAA	-15	NA	95739649	95833697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_95739837_95743421_95743514_95744835_95744986_95747020_95747899_95748635_95748815_95749546_95749739_95751934_95752126_95752672_95752826_95753056_95753250_95753486_95753741_95756130_95756322_95756403_95756505_95756755_95756928_95757646_95757818_95760507_95760703_95763278_95763465_95765168_95765262_95767394_95767526_95770152_95770297_95772815_95772910_95775467_95775594_95779588_95779796_95781089_95781204_95785715_95785832_95787790_95787912_95789348_95789487_95790302_95790496_95792531_95792711_95796989_95797155_95798482_95798575_95802397_95802490_95802719_95802898_95803705_95803886_95804800_95804961_95809221_95809402_95814382_95814526_95817531_95817630_95818347_95818581_95819566_95819702_95821202_95821404_95822922_95823067_95824638_95824790_95827140_95827298_95827396_95827551_95829142_95829295_95832597_95832704_95833503
transcript_14136.known	chr10	-	1477	7	FSM	ENSMUSG00000020124.11	ENSMUST00000220284.2	1477	7	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_1	121.767538093423	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGGAAAAAGAAAAAAAATT	NA	False	NA	NA	False	AAAACA	-18	NA	123032846	122988264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_141365.known	chr9	+	4455	17	FSM	ENSMUSG00000041440.19	ENSMUST00000122383.3	4455	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	18.0831413200251	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCATATGCATATTT	NA	False	NA	17	True	AATAAA	-27	NA	96001427	96066661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96053512_96053608_96056742_96056847_96058282_96058343_96059471_96059606_96060973_96061060_96063824
transcript_141366.known	chr9	+	2815	16	FSM	ENSMUSG00000041440.19	ENSMUST00000085217.12	2815	16	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	8.15843122174846	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGCCTACTTCACAG	NA	False	NA	NA	False	CATAAA	-13	NA	96001414	96062243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96053512_96053608_96056742_96056847_96058282_96058343_96059471_96059606_96060973
transcript_14137.known	chr10	-	2840	6	FSM	ENSMUSG00000020124.11	ENSMUST00000219010.2	2840	6	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_5	37.9968419740378	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAGAAAAGAGAAGGGAG	NA	False	NA	NA	False	NA	NA	NA	123032831	122997351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_14138.nic	chr10	-	607	5	ISM	ENSMUSG00000020124.11	ENSMUST00000219010.2	2840	6	-94	6899	-25	-4731	5prime_fragment	FALSE	canonical	3	512	junction_4	39.9585722968176	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCAATATTCCAGATGAG	NA	False	NA	NA	False	AAGAAA	-3	NA	123032925	123004250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_14139.nic	chr10	-	580	4	ISM	ENSMUSG00000020124.11	ENSMUST00000219010.2	2840	6	-94	9653	-25	-7485	5prime_fragment	FALSE	canonical	3	512	junction_3	45.8112067802919	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATGGAGGCTCCCGTCCC	NA	False	NA	NA	False	NA	NA	NA	123032925	123007004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_123007132_123011747_123011879_123017577_123017706_123032731
transcript_141406.nnic	chr9	+	1905	15	NNC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_3	119.483326477473	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96078281	96200024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_96078614_96084183_96084242_96093185_96093270_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_141408.nnic	chr9	+	2915	15	NNC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_3	119.483326477473	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAATATTCAGTGTTTT	NA	False	NA	4	True	NA	NA	NA	96078281	96201034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_96078614_96084183_96084242_96093185_96093270_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_141426.known	chr9	+	1713	14	FSM	ENSMUSG00000032411.16	ENSMUST00000188750.7	1713	14	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	94.2279120445955	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96078389	96200024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_141437.nic	chr9	+	1773	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	208	junction_3	91.9133045622643	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96078281	96200024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_141439.nic	chr9	+	2783	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	208	junction_3	91.9133045622643	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAATATTCAGTGTTTT	NA	False	NA	4	True	NA	NA	NA	96078281	96201034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_14144.known	chr10	+	4016	19	FSM	ENSMUSG00000020105.10	ENSMUST00000074807.8	4016	19	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	15.6639083466215	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATAGTCTCCAATGCATT	NA	False	NA	NA	False	AATAAA	-34	NA	125802121	125851228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_125802581_125807989_125808062_125808261_125808337_125830286_125830419_125831302_125831447_125832483_125832628_125832930_125833075_125833472_125833617_125834818_125834900_125835957_125836030_125838269_125838342_125838810_125838975_125842556_125842878_125844338_125844621_125845655_125846109_125846769_125846929_125848878_125849023_125849120_125849391_125850544
transcript_141443.known	chr9	+	7354	13	FSM	ENSMUSG00000032411.16	ENSMUST00000034982.16	7354	13	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	115.436009209528	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGTGTCATAATTGGTG	NA	False	NA	NA	False	AATAAA	-14	NA	96078356	96205699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_141455.nic	chr9	+	2650	12	NIC	ENSMUSG00000032411.16	novel	7354	13	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_3	115.371408864896	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAATATTCAGTGTTTT	NA	False	NA	4	True	NA	NA	NA	96078347	96201034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_141459.known	chr9	+	1576	12	FSM	ENSMUSG00000032411.16	ENSMUST00000188008.7	1576	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	138.805946951458	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATAAAGACAGGAGAGAA	NA	False	NA	-13	True	NA	NA	NA	96078369	96200017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_96078614_96084183_96084242_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_141471.known	chr9	+	2212	11	FSM	ENSMUSG00000032411.16	ENSMUST00000165768.4	2212	11	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	147.7810542661	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTTCTTTTCCATATT	NA	False	NA	-72	True	NA	NA	NA	96141337	96200958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_96141354_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179676_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_141473.known	chr9	+	2341	10	FSM	ENSMUSG00000032411.16	ENSMUST00000165120.9	2341	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	134.838174614363	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATATGGCCATCACTGT	NA	False	NA	-99	True	AATGAA	-30	NA	96078327	96200931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_141491.known	chr9	+	3148	1	FSM	ENSMUSG00000032411.16	ENSMUST00000190689.2	3148	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-37	NA	96187153	96190301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_96187200_96190300
transcript_141493.known	chr9	-	1994	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAACACATGATGGAGT	NA	False	NA	-10	True	AATAAA	-41	NA	96246495	96214707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
transcript_141501.known	chr9	-	1232	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	0	0	0	0	multi-exon	FALSE	canonical	3	1085	junction_1	10	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTCTTTATTTGGCGGT	3713	False	NA	0	True	ATTAAA	-35	NA	96360728	96352989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96353906_96356010_96356059_96360460
transcript_141503.known	chr9	-	325	2	FSM	ENSMUSG00000051234.7	ENSMUST00000128955.2	325	2	0	0	0	0	multi-exon	FALSE	canonical	3	1105	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGCTGTGGTAACCCAGG	3800	False	NA	NA	False	ATTAAA	-15	NA	96360641	96355914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96356059_96360460
transcript_141504.known	chr9	-	5813	24	FSM	ENSMUSG00000032413.13	ENSMUST00000034984.8	5813	24	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	16.7988207345585	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTGTGAGACCTT	NA	False	NA	NA	False	AATAAA	-15	NA	96513670	96421352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96424529_96426331_96426519_96426840_96426945_96427641_96427851_96428299_96428383_96434355_96434463_96435165_96435240_96439452_96439531_96442750_96442835_96448068_96448176_96450416_96450541_96451072_96451148_96451743_96451859_96452718_96452868_96453917_96454075_96458338_96458441_96459525_96459603_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
transcript_141510.nnic	chr9	-	925	8	NNC	ENSMUSG00000032413.13	novel	5813	24	NA	NA	1	-7967	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	17.5324771524745	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTAGTCTTTTTTCATA	NA	False	NA	-4	True	AATAAA	-21	NA	96513669	96461907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_96462029_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
transcript_141512.known	chr9	-	1987	20	FSM	ENSMUSG00000032413.13	ENSMUST00000128346.8	1987	20	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_19	18.5851339036356	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTGGAAGAAGGCTCT	NA	False	NA	NA	False	AGTAAA	-18	NA	96513589	96428334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96428383_96434355_96434463_96435165_96435240_96439452_96439531_96442750_96442835_96448068_96448176_96450416_96450541_96451072_96451148_96451743_96451859_96452718_96452868_96453917_96454075_96458338_96458441_96459525_96459603_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513450
transcript_141514.known	chr9	-	7406	6	FSM	ENSMUSG00000040433.17	ENSMUST00000152594.8	7406	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.01980390271856	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAAGTGTCTTTTCTAA	2378	False	NA	-17	True	ATTAAA	-14	NA	96634884	96564822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96571083_96600262_96600363_96613344_96613796_96614300_96614367_96633354_96633437_96634437
transcript_141520.known	chr9	-	929	3	FSM	ENSMUSG00000040433.17	ENSMUST00000128269.8	929	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAGCAAGCTTCAAAAAG	9799	False	NA	NA	False	NA	NA	NA	96601618	96570529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96571083_96600262_96600363_96601342
transcript_141521.known	chr9	-	2673	3	FSM	ENSMUSG00000040433.17	ENSMUST00000140121.8	2673	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCAATAAAAAAACAGCGAA	9064	False	NA	NA	False	ACTAAA	-44	NA	96602353	96569450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96571083_96600262_96600363_96601412
transcript_141522.known	chr9	-	2937	3	FSM	ENSMUSG00000040433.17	ENSMUST00000126066.8	2937	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAAACAGCTGAGAAAAAT	9514	False	NA	NA	False	AAGAAA	-1	NA	96601903	96568310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96571083_96600262_96600363_96601838
transcript_14153.known	chr10	+	1304	1	FSM	ENSMUSG00000020105.10	ENSMUST00000218363.2	1304	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACTTAAAAAAAAAAGAAGTT	NA	False	NA	NA	False	AAAAAG	-11	NA	125802036	125803340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_125802000_125803300
transcript_141530.known	chr9	-	996	7	FSM	ENSMUSG00000043587.16	ENSMUST00000126411.8	996	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	14.2009389360939	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTCTGCTCTGGAAGC	NA	False	NA	NA	False	NA	NA	NA	96771481	96707468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738086_96738248_96738420_96738553_96771411
transcript_141532.known	chr9	-	2768	7	FSM	ENSMUSG00000043587.16	ENSMUST00000119141.8	2768	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.9155027478869	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAAAAAGAACAAC	NA	False	NA	NA	False	TTTAAA	-10	NA	96771486	96705638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738420_96738553_96765587_96765686_96771411
transcript_141536.known	chr9	-	2908	6	FSM	ENSMUSG00000043587.16	ENSMUST00000078478.8	2908	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	3.9293765408777	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTACAGCTTACGGTG	NA	False	NA	-2	True	AATAAA	-16	NA	96771482	96705396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738420_96738553_96771411
transcript_141538.known	chr9	-	1803	1	FSM	ENSMUSG00000043587.16	ENSMUST00000185561.2	1803	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	96771486	96769683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96769700_96771500
transcript_141539.known	chr9	+	490	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAATTTCTTTTGACTTGC	NA	False	NA	NA	False	NA	NA	NA	96777710	96778200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_96777700_96778200
transcript_141540.known	chr9	-	2720	3	FSM	ENSMUSG00000046997.6	ENSMUST00000055433.5	2720	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGTGTAAAGTGCTCTA	NA	False	NA	NA	False	AATAAA	-22	NA	96900896	96825534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96826758_96877627_96878475_96900246
transcript_141548.nnic	chr9	-	4637	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_4	385.517410072992	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAGATTTTATAATGGT	NA	False	NA	-4	True	ATTAAA	-37	NA	96993187	96957617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971581_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_141549.nnic	chr9	-	4764	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	212	junction_4	351.164593073635	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAGATTTTATAATGGT	NA	False	NA	-4	True	ATTAAA	-37	NA	96993248	96957617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_141550.nnic	chr9	-	4656	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	465.741015884956	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAGATTTTATAATGGT	NA	False	NA	-4	True	ATTAAA	-37	NA	96993186	96957617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971872_96971930_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_141557.known	chr9	-	5227	7	FSM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_3	363.380272197353	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTCTTGTTTCCACCT	NA	False	NA	0	True	NA	NA	NA	96993210	96957013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_141561.known	chr9	-	685	4	FSM	ENSMUSG00000032449.14	ENSMUST00000148337.2	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_1	32.124756808418	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATACCTCTACTGGAGTTA	NA	False	NA	NA	False	NA	NA	NA	96993040	96974865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96975231_96979155_96979234_96982127_96982293_96992963
transcript_141565.known	chr9	-	1060	2	FSM	ENSMUSG00000032449.14	ENSMUST00000152632.2	1060	2	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	96993086	96981355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_96982293_96992963
transcript_141567.known	chr9	+	2166	5	FSM	ENSMUSG00000032456.14	ENSMUST00000112935.8	2166	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3.53553390593274	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTCTTTTTTTTTTCTT	NA	False	NA	NA	False	AATAAA	-26	NA	98178635	98293487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_98179034_98236071_98236218_98281508_98281693_98285586_98285667_98292129
transcript_141568.known	chr9	+	2652	4	FSM	ENSMUSG00000046402.11	ENSMUST00000052068.11	2652	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	8.01387685344754	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTACCTTCACTTGTTTT	2885	False	NA	41	True	AATAAA	-42	NA	98305013	98328628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_98307105_98307505_98307685_98326642_98326745_98328348
transcript_141569.known	chr9	-	652	1	FSM	ENSMUSG00000051074.5	ENSMUST00000058992.3	652	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGTGCAAATACATTGT	NA	False	NA	NA	False	AATAAA	-31	NA	98445664	98445012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_98445000_98445700
transcript_14157.known	chr10	-	903	6	FSM	ENSMUSG00000025436.13	ENSMUST00000026504.13	903	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	67.2767418949521	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTTTGACACATTACT	NA	False	NA	-26	True	AATAAA	-19	NA	126737224	126704295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_126704595_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
transcript_141575.known	chr9	+	3050	22	FSM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_10	53.4673910412871	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	19	True	CATAAA	-20	NA	98445783	98470435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
transcript_141579.nic	chr9	+	2764	21	ISM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	-52	553	-42	0	5prime_fragment	TRUE	canonical	3	669	junction_10	48.5267709620164	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTCAGCCATCCTCTGC	NA	False	NA	NA	False	AAGAAA	-3	NA	98445731	98469882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813
transcript_14159.known	chr10	-	1043	6	FSM	ENSMUSG00000025436.13	ENSMUST00000168520.3	1043	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	12.3515181253156	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTATTTTTTGGCTCTT	NA	False	NA	0	True	AATAAA	-25	NA	126737217	126723117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_126723564_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
transcript_141598.known	chr9	-	1197	8	FSM	ENSMUSG00000032459.10	ENSMUST00000035034.10	1197	8	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_2	42.1929484387994	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTAATTCGTTTTT	NA	False	NA	-9	True	ATTAAA	-20	NA	98483713	98470782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_98470980_98472087_98472197_98474607_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480352_98483525
transcript_141606.known	chr9	+	1817	1	FSM	ENSMUSG00000090470.3	ENSMUST00000167951.3	1817	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGAGTCAAAAATCATAGC	NA	False	NA	6	True	AATAAA	-19	NA	98746819	98748636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_98746800_98748600
transcript_141608.known	chr9	+	1019	5	FSM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_2	16.8430252627015	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGTTTGGTTTCATG	3544	False	NA	9	True	AATAAA	-23	NA	98868425	98884074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_98868566_98874153_98874287_98874565_98874795_98881019_98881070_98883607
transcript_141611.known	chr9	-	6478	24	FSM	ENSMUSG00000032462.15	ENSMUST00000035037.14	6478	24	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	24.902380296338	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAATTTGTTGTGTAGCC	NA	False	NA	-3	True	AATAAA	-12	NA	99022140	98918706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_98921904_98922973_98923107_98924576_98924723_98926797_98926922_98928599_98928768_98934357_98934437_98936023_98936134_98937394_98937574_98942237_98942338_98943783_98943928_98944889_98945012_98946072_98946262_98947612_98947664_98952293_98952425_98953400_98953498_98955631_98955884_98970657_98970736_98972202_98972374_98975095_98975276_98976492_98976717_98983227_98983454_98987583_98987771_99004336_99004430_99022043
transcript_141617.nic	chr9	-	1606	9	ISM	ENSMUSG00000032462.15	ENSMUST00000035037.14	6478	24	-163	36990	-163	27706	5prime_fragment	FALSE	canonical	3	182	junction_5	19.0509186130223	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAGAAATCAACAAAGACT	NA	False	NA	NA	False	AGTAAA	-3	NA	99022303	98955696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_98955884_98970657_98970736_98972202_98972374_98975095_98975276_98976492_98976717_98983227_98983454_98987583_98987771_99004336_99004430_99022043
transcript_14162.known	chr10	-	3461	6	FSM	ENSMUSG00000025436.13	ENSMUST00000220051.2	3461	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	72.4497066936782	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCTCTATGACTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	126737219	126723838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_126726701_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
transcript_141623.known	chr9	+	2606	18	FSM	ENSMUSG00000056267.15	ENSMUST00000093795.10	2606	18	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_10	72.0150887688172	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125494	99182457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
transcript_141624.nic	chr9	+	2661	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	-11	0	combination_of_known_junctions	TRUE	canonical	3	66	junction_1	83.1088001619555	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125483	99182457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
transcript_141631.known	chr9	+	2120	16	FSM	ENSMUSG00000056267.15	ENSMUST00000191335.7	2120	16	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_10	76.0584570504089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGAGTTGGATTATA	NA	False	NA	NA	False	ATTAAA	-13	NA	99125515	99180038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631
transcript_141639.nic	chr9	+	1144	11	ISM	ENSMUSG00000056267.15	ENSMUST00000191335.7	2120	16	-30	16889	-9	3046	5prime_fragment	FALSE	canonical	3	165	junction_10	84.8365487275384	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAAGTAATTATATTTTG	NA	False	NA	NA	False	TATAAA	-39	NA	99125485	99163149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080
transcript_141647.known	chr9	+	1768	6	FSM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	56.4361586219332	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTCTTGGTCATCAT	NA	False	NA	7	True	NA	NA	NA	99125513	99146981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
transcript_141649.known	chr9	+	740	6	FSM	ENSMUSG00000056267.15	ENSMUST00000185799.7	740	6	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	121.109867475776	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAATAGAATAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	99125419	99145815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
transcript_141653.nic	chr9	+	2462	5	ISM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	-15	0	4	0	intron_retention	FALSE	canonical	3	228	junction_1	61.0384100382702	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTCTTGGTCATCAT	NA	False	NA	7	True	NA	NA	NA	99125498	99146981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878
transcript_141660.known	chr9	-	4483	23	FSM	ENSMUSG00000037681.14	ENSMUST00000042158.13	4483	23	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_20	5.80538365130531	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGTATATTTCTATT	NA	False	NA	1	True	AATAAA	-20	NA	99240571	99192015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_99193731_99193998_99194049_99197239_99197346_99198698_99198831_99199258_99199358_99199940_99200441_99201555_99201706_99202307_99202395_99202886_99202956_99203434_99203498_99203579_99203643_99204150_99204241_99204649_99204699_99206210_99206294_99206949_99207121_99209951_99210073_99211808_99211865_99212753_99212844_99213411_99213479_99214858_99214936_99218117_99218253_99220820_99220863_99240103
transcript_141669.known	chr9	-	1190	6	FSM	ENSMUSG00000032470.18	ENSMUST00000119472.8	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	193.993195756965	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	NA	False	NA	28	True	ATTAAA	-15	NA	99307949	99270031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99307829
transcript_14167.known	chr10	+	4817	8	FSM	ENSMUSG00000078429.10	ENSMUST00000105256.10	4817	8	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_2	56.6705480863575	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGACTGGGAGCTGCTT	NA	False	NA	13	True	AATAAA	-19	NA	126814585	126835838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229
transcript_141670.known	chr9	-	4701	6	FSM	ENSMUSG00000032470.18	ENSMUST00000035045.15	4701	6	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_5	30.9644957976067	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTATTTCCTCTTC	3239	False	NA	-4	True	NA	NA	NA	99319434	99267472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318362
transcript_141671.known	chr9	-	1167	6	FSM	ENSMUSG00000032470.18	ENSMUST00000122384.9	1167	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	190.404411713594	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGCTGTTGTCTTCTTAA	3694	False	NA	21	True	GATAAA	-10	NA	99318979	99269980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318933
transcript_141672.nic	chr9	-	1424	6	NIC	ENSMUSG00000032470.18	novel	1190	6	NA	NA	-281	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	2269	False	NA	28	True	ATTAAA	-15	NA	99302486	99270031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
transcript_141685.known	chr9	-	4647	22	FSM	ENSMUSG00000032468.12	ENSMUST00000035043.12	4647	22	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_7	54.8151294142266	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTTTTCCAAGTGACTG	NA	False	NA	6	True	AATAAA	-35	NA	99450952	99360424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
transcript_141696.nic	chr9	-	2713	21	NIC	ENSMUSG00000032468.12	novel	4647	22	NA	NA	-2	-1859	combination_of_known_junctions	FALSE	canonical	3	18	junction_20	65.4877660330538	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTGAATTATATACAGT	NA	False	NA	NA	False	NA	NA	NA	99450954	99362283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99450654
transcript_141701.known	chr9	-	2820	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_11	21.8011297000487	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTTTATGTGTGTGATA	NA	False	NA	-1	True	AATAAA	-28	NA	99450702	99400856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
transcript_141704.known	chr9	-	2761	11	FSM	ENSMUSG00000032468.12	ENSMUST00000186049.2	2761	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_10	66.7805360864975	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTTTATGTGTGTGATA	NA	False	NA	-1	True	AATAAA	-28	NA	99450720	99400856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99450654
transcript_141707.known	chr9	+	2261	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCCATCCTGCTGCAT	6406	False	NA	49	True	TATAAA	-1	NA	99457851	99466554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
transcript_141719.nic	chr9	+	4140	17	NIC	ENSMUSG00000037784.15	novel	4350	17	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	5.26634360823522	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTCGTTCTTTGTTATT	NA	False	NA	NA	False	AATATA	-21	NA	99511544	99551309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_99511723_99514689_99514802_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545581_99545770_99547767_99547908_99549691
transcript_141721.known	chr9	+	4350	17	FSM	ENSMUSG00000037784.15	ENSMUST00000112885.9	4350	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	6.09302880347697	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTCGTTCTTTGTTATT	NA	False	NA	NA	False	AATATA	-21	NA	99511630	99551309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_99512016_99514689_99514802_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545578_99545770_99547767_99547908_99549691
transcript_141725.known	chr9	+	3981	16	FSM	ENSMUSG00000037784.15	ENSMUST00000078367.12	3981	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	6.14997741639937	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTCGTTCTTTGTTATT	NA	False	NA	NA	False	AATATA	-21	NA	99511594	99551309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_99511723_99519399_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685_99541829_99542974_99543159_99544993_99545211_99545578_99545770_99547767_99547908_99549691
transcript_141732.known	chr9	-	550	2	FSM	ENSMUSG00000101042.2	ENSMUST00000187644.2	550	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGGTGATCTTTATAT	NA	False	NA	NA	False	ATTAAA	-12	NA	100205577	100203663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_100203977_100205340
transcript_141733.known	chr9	-	4476	4	FSM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_2	6.34209919681348	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTATAGCCATATTGA	NA	False	NA	NA	False	AATAAA	-23	NA	100428187	100374345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_100377725_100379310_100380024_100390481_100390726_100428047
transcript_141737.known	chr9	-	1513	3	FSM	ENSMUSG00000032475.16	ENSMUST00000112874.4	1513	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	62	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGATATTGCATCTGT	NA	False	NA	-40	True	AATAAA	-18	NA	100388909	100377055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_100377725_100379310_100380024_100388778
transcript_141738.known	chr9	-	1590	2	FSM	ENSMUSG00000070287.4	ENSMUST00000093792.4	1590	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATGATCTTTGTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	100453143	100434240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_100435688_100453000
transcript_14174.known	chr10	-	1206	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	1351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTGTGAGTGTGTGT	NA	False	NA	-3	True	AATAAA	-24	NA	126866709	126858200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
transcript_141744.nic	chr9	+	6261	34	NIC	ENSMUSG00000037286.16	novel	3857	26	NA	NA	-113	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_1	68.4680054375402	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTGGTTATCCTGTTG	NA	False	NA	14	True	AATAAA	-14	NA	100479737	100840597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_100480163_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
transcript_141745.known	chr9	+	6186	34	FSM	ENSMUSG00000037286.16	ENSMUST00000129269.8	6186	34	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_9	35.0771941586826	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGGTTATCCTGTTGC	NA	False	NA	15	True	AATAAA	-15	NA	100525500	100840598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
transcript_141763.known	chr9	+	558	3	FSM	ENSMUSG00000037286.16	ENSMUST00000144005.8	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTAGCATTGTCTACTG	NA	False	NA	NA	False	NA	NA	NA	100525665	100594762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_100525850_100587205_100587308_100594490
transcript_141765.known	chr9	-	2320	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTTGTTTTTTTAT	NA	False	NA	0	True	NA	NA	NA	100916951	100864084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
transcript_141769.known	chr9	-	2188	14	FSM	ENSMUSG00000032527.14	ENSMUST00000149322.8	2188	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	26.8991102116318	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTTGTTTTTTTAT	NA	False	NA	0	True	NA	NA	NA	100916930	100864084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
transcript_141777.nnic	chr9	+	3426	3	NNC	ENSMUSG00000066415.5	novel	4889	2	NA	NA	-47	1026	at_least_one_novel_splicesite	FALSE	non_canonical	1	8	junction_1	24	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAAGCTGTTTATGCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	100956106	100980010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_100956374_100956555_100957474_100977769
transcript_141779.nnic	chr9	+	4500	3	NNC	ENSMUSG00000066415.5	novel	4889	2	NA	NA	-47	-915	at_least_one_novel_splicesite	FALSE	non_canonical	1	8	junction_1	24	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCTTAGTTGTCTTGTC	NA	False	NA	11	True	AGTAAA	-11	NA	100956106	100981084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_100956374_100956555_100957474_100977769
transcript_141783.known	chr9	-	6786	14	FSM	ENSMUSG00000043154.16	ENSMUST00000075941.12	6786	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	6.00788436608204	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCGGTTTAGATACAATTC	NA	False	NA	NA	False	AATAAA	-37	NA	101128994	100982282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_100985169_101002221_101002329_101003507_101003627_101004095_101004272_101021509_101021600_101022673_101022723_101025780_101025938_101030986_101031074_101052526_101052602_101057533_101057637_101063131_101063236_101071357_101071625_101088329_101090762_101128860
transcript_141789.known	chr9	-	4667	16	FSM	ENSMUSG00000032537.16	ENSMUST00000035129.14	4667	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	1.4544949486181	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTTGTCAGAGTGTGTCC	NA	False	NA	NA	False	ATTAAA	-31	NA	102231892	101799326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_101800794_101804693_101804850_101806465_101806660_101813267_101813418_101841130_101841347_101848289_101848538_101861280_101861404_101873107_101873173_101873978_101874088_101878903_101879067_101887215_101887341_101918210_101918547_101944069_101944226_102071972_102072655_102100586_102100652_102231480
transcript_141792.known	chr9	+	5837	11	FSM	ENSMUSG00000035606.9	ENSMUST00000039390.6	5837	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.640312423743285	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAACAATGTAATTATCGA	NA	False	NA	NA	False	AATAAA	-18	NA	102382948	102423438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102383478_102386309_102386373_102390171_102390235_102398487_102398563_102400516_102400580_102402596_102402680_102403894_102404004_102405098_102405217_102414799_102414989_102416196_102416388_102419084
transcript_141793.known	chr9	-	1791	15	FSM	ENSMUSG00000032534.19	ENSMUST00000216281.2	1791	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	44.4853220461651	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCACAGCCACAGACGG	NA	False	NA	NA	False	NA	NA	NA	102503180	102464052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102498894_102498928_102500754_102500793_102503102
transcript_141798.known	chr9	-	4180	13	FSM	ENSMUSG00000032534.19	ENSMUST00000162655.9	4180	13	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_12	13.3260396717604	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGTCTGTTGTCTAAAT	NA	False	NA	NA	False	AATATA	-21	NA	102503733	102461786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102503461
transcript_141804.nic	chr9	-	1476	10	ISM	ENSMUSG00000032534.19	ENSMUST00000162655.9	4180	13	-54	13629	-54	0	5prime_fragment	FALSE	canonical	3	75	junction_9	11.9256958799989	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGGATGGAAGGGCATAA	NA	False	NA	NA	False	NA	NA	NA	102503787	102475415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102503461
transcript_141807.known	chr9	+	589	3	FSM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	0	0	0	0	multi-exon	TRUE	canonical	3	1105	junction_1	209.5	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTGCTTCTGTCAAAGT	NA	False	NA	NA	False	ATTAAA	-18	NA	102503494	102511624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102503546_102506961_102507088_102511212
transcript_141808.known	chr9	+	727	3	FSM	ENSMUSG00000035048.14	ENSMUST00000188398.7	727	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	699	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTTTTCGTTTTGTTTT	NA	False	NA	25	True	AATAAA	-25	NA	102503522	102511449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102503887_102506961_102507088_102511212
transcript_141809.known	chr9	+	595	3	FSM	ENSMUSG00000035048.14	ENSMUST00000186693.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	2	118	junction_1	703	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503877	102511441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102504118_102506961_102507088_102511212
transcript_141813.nic	chr9	+	4288	10	NIC	ENSMUSG00000032531.16	novel	3475	10	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	65.4896090146283	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTCTGTCTATT	NA	False	NA	17	True	AATAAA	-20	NA	102594446	102610617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_102594642_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
transcript_141814.known	chr9	+	4328	10	FSM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	19.0852538254079	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTCTGTCTATT	NA	False	NA	17	True	AATAAA	-20	NA	102594866	102610617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102595102_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
transcript_141817.nic	chr9	+	4193	10	NIC	ENSMUSG00000032531.16	novel	3475	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	65.1808500241946	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTCTGTCTATT	NA	False	NA	17	True	AATAAA	-20	NA	102595629	102610617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_102595730_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
transcript_141819.nic	chr9	+	4337	10	NIC	ENSMUSG00000032531.16	novel	3475	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	66.4161961505709	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTCTGTCTATT	NA	False	NA	17	True	AATAAA	-20	NA	102595668	102610617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_102595913_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
transcript_141826.known	chr9	+	4222	11	FSM	ENSMUSG00000032531.16	ENSMUST00000153965.8	4222	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	86.4759504139735	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGATGTCTGTCTGTCTGT	NA	False	NA	12	True	AATAAA	-15	NA	102594000	102610612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102594011_102594161_102594286_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
transcript_14183.known	chr10	-	695	3	FSM	ENSMUSG00000040521.12	ENSMUST00000134917.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_2	50	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAATATAA	NA	False	NA	NA	False	NA	NA	NA	126866672	126865090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_126865552_126866331_126866506_126866612
transcript_141836.known	chr9	+	2505	15	FSM	ENSMUSG00000032547.13	ENSMUST00000175883.8	2505	15	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_7	106.419462697461	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCCCCCGCATGGAAAATC	NA	False	NA	65	True	NA	NA	NA	102712115	102784741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102712439_102739072_102739195_102744753_102744854_102746472_102746608_102748926_102748981_102752937_102753083_102758852_102758954_102763192_102763328_102765668_102765756_102768414_102768485_102774400_102774534_102775657_102775768_102775889_102776050_102783235_102783373_102784048
transcript_141838.known	chr9	+	2852	15	FSM	ENSMUSG00000032547.13	ENSMUST00000035142.8	2852	15	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_7	39.7877019252155	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCACAGTGTGTGACTG	NA	False	NA	52	True	ATTAAA	-32	NA	102712170	102785152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102712439_102739072_102739195_102744753_102744854_102746472_102746608_102748926_102748981_102752937_102753083_102758852_102758954_102763201_102763328_102765668_102765756_102768414_102768485_102774400_102774534_102775657_102775768_102775889_102776050_102783235_102783373_102784048
transcript_141841.known	chr9	+	7122	14	FSM	ENSMUSG00000032548.15	ENSMUST00000035148.13	7122	14	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_10	4.55472964402691	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGCCAAGCCATGCATT	NA	False	NA	NA	False	AATAAA	-19	NA	102885200	102967650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102885915_102923883_102924022_102927342_102927506_102945023_102945252_102946343_102946443_102947426_102947564_102949757_102949834_102950346_102950512_102951574_102951765_102954122_102954289_102956647_102956812_102959527_102959593_102962016_102962141_102962957
transcript_141845.known	chr9	+	5007	8	FSM	ENSMUSG00000032549.8	ENSMUST00000035155.8	5007	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	2.35606035749581	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTTGTTGACTCTTTCT	233	False	NA	10	True	AATAAA	-23	NA	102989005	103062475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_102989426_103017580_103017640_103038018_103038073_103038262_103038369_103039740_103039853_103041008_103041103_103044304_103044372_103058380
transcript_141853.nnic	chr9	-	2918	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	97.1596624119289	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTCTTTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	103079336	103065230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_103066696_103066841_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
transcript_141859.nnic	chr9	-	1769	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	97.1596624119289	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTGAGTCAAATGATGAG	NA	False	NA	3	True	TATAAA	-34	NA	103079336	103066285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_103066653_103066892_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
transcript_141860.nnic	chr9	-	1863	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	97.1596624119289	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTGAGTCAAATGATGAG	NA	False	NA	3	True	TATAAA	-34	NA	103079336	103066285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_103066696_103066841_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
transcript_141862.nnic	chr9	-	1709	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	97.1596624119289	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTGTTCTCATTGCTT	NA	False	NA	-1	True	TTTAAA	-35	NA	103079336	103066345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_103066653_103066892_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
transcript_141863.nnic	chr9	-	1803	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	97.1596624119289	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTGTTCTCATTGCTT	NA	False	NA	-1	True	TTTAAA	-35	NA	103079336	103066345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_103066696_103066841_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
transcript_141864.nnic	chr9	-	1705	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	-57	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	97.1596624119289	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTGTTCTCATTGCTT	NA	False	NA	-1	True	TTTAAA	-35	NA	103079336	103066345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_103066696_103066939_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
transcript_14187.known	chr10	+	1044	6	FSM	ENSMUSG00000006732.15	ENSMUST00000120542.8	1044	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	158.453273869617	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	126877826	126881484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880865_126880997_126881147
transcript_141871.known	chr9	-	3064	7	FSM	ENSMUSG00000032553.15	ENSMUST00000035157.10	3064	7	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_6	16.5873110807294	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTCTTTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	103079336	103065230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
transcript_141874.known	chr9	-	2571	17	FSM	ENSMUSG00000032554.16	ENSMUST00000035158.16	2571	17	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_12	9.88982273602515	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTCCTGAGCTCAAG	NA	False	NA	73	True	TATAAA	-6	NA	103107643	103085993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_103086278_103087693_103087878_103089010_103089196_103092391_103092457_103093012_103093143_103094561_103094733_103096421_103096455_103097000_103097092_103098091_103098244_103099249_103099428_103100133_103100313_103100782_103100839_103102241_103102375_103103159_103103337_103104036_103104146_103105094_103105268_103107372
transcript_141881.known	chr9	+	5224	28	FSM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_13	76.5309229485215	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGATTTGTTCATTT	953	False	NA	14	True	AATAAA	-19	NA	103182413	103227627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466_103200826_103201525_103201699_103202840_103203053_103205605_103205893_103209883_103210055_103210143_103210254_103211254_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
transcript_141887.nic	chr9	+	5139	27	NIC	ENSMUSG00000032555.11	novel	5224	28	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_17	132.54375184763	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGATTTGTTCATTT	891	False	NA	14	True	AATAAA	-19	NA	103182351	103227627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466_103200826_103201525_103201699_103202840_103203053_103205605_103205893_103209883_103210055_103210143_103210254_103211254_103211379_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
transcript_14189.known	chr10	+	1791	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGAGTGTTTGCCTG	NA	False	NA	13	True	TTTAAA	-18	NA	126877800	126882234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
transcript_141900.nic	chr9	+	1955	11	ISM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	-62	26930	-62	-6143	5prime_fragment	FALSE	canonical	3	482	junction_5	44.2623993927126	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAAGAGAGCATGCTGGC	891	False	NA	NA	False	AATAAA	-17	NA	103182351	103200697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466
transcript_141901.nic	chr9	+	967	6	ISM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	-62	37461	-62	1447	5prime_fragment	FALSE	canonical	3	482	junction_5	43.6788278230998	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAACAATGCCTTAGATG	891	False	NA	NA	False	NA	NA	NA	103182351	103190166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970
transcript_141902.nic	chr9	+	771	5	ISM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	-62	38753	-62	155	5prime_fragment	FALSE	canonical	3	558	junction_2	18.8331489666492	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGCACATTCATATGCT	891	False	NA	NA	False	GATAAA	-28	NA	103182351	103188874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692
transcript_141903.known	chr9	+	769	1	FSM	ENSMUSG00000032555.11	ENSMUST00000189631.2	769	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACCAAAAACCCTACA	969	False	NA	NA	False	NA	NA	NA	103182429	103183198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_103182400_103183200
transcript_141905.known	chr9	-	3107	5	FSM	ENSMUSG00000032803.16	ENSMUST00000190226.7	3107	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	215.031974366604	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTGGAATGTGATGCTT	NA	False	NA	-8	True	AATAAA	-14	NA	103242178	103230302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_103232513_103233478_103233639_103237074_103237218_103241173_103241251_103241661
transcript_141906.known	chr9	-	3387	5	FSM	ENSMUSG00000032803.16	ENSMUST00000035484.11	3387	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	174.534201519358	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATGCTTTCTGTTGAAA	NA	False	NA	2	True	AATAAA	-24	NA	103243039	103230292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_103232513_103233478_103233639_103237074_103237218_103241173_103241251_103242252
transcript_141907.known	chr9	-	3741	5	FSM	ENSMUSG00000032803.16	ENSMUST00000116517.9	3741	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	188.321533553654	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTGGAATGTGATGCTT	NA	False	NA	-8	True	AATAAA	-14	NA	103242096	103230302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_103233229_103233478_103233639_103237074_103237218_103241173_103241251_103241661
transcript_141908.known	chr9	-	1023	5	FSM	ENSMUSG00000032803.16	ENSMUST00000189896.2	1023	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	184.859913177519	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAGTGGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	103242818	103233148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_103233226_103233478_103233639_103237074_103237218_103241173_103241251_103242252
transcript_141917.known	chr9	-	2145	6	FSM	ENSMUSG00000042757.17	ENSMUST00000189066.2	2145	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	9.53729521405309	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTTGCACTGATTGCTTC	NA	False	NA	NA	False	AATAAA	-17	NA	103638993	103361634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_103361983_103366387_103366543_103376000_103377408_103486909_103486992_103630053_103630167_103638953
transcript_141918.known	chr9	-	2850	6	FSM	ENSMUSG00000042757.17	ENSMUST00000189588.7	2850	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	14.324803663576	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAATAAAAGATT	NA	False	NA	NA	False	ATTAAA	-6	NA	103639036	103360976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_103361983_103366387_103366543_103376000_103377408_103486909_103486996_103630053_103630167_103638953
transcript_141919.known	chr9	+	5899	27	FSM	ENSMUSG00000032558.20	ENSMUST00000035167.15	5899	27	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_1	5.77333187568024	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGGCCAAGTTTAGTCAA	NA	False	NA	14	True	AATAAA	-28	NA	103879744	103921017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_103880361_103881912_103882039_103882654_103882806_103885319_103885473_103886338_103886473_103888799_103888961_103892523_103892681_103893278_103893354_103895301_103895476_103897924_103898029_103898454_103898570_103899860_103900005_103900618_103900717_103901780_103901884_103903100_103903184_103907160_103907300_103909089_103909255_103910526_103910622_103911576_103911700_103912904_103913092_103913237_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
transcript_141922.known	chr9	+	4722	27	FSM	ENSMUSG00000032558.20	ENSMUST00000194774.6	4722	27	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	6.38461538461538	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCCTAAGCTGGTTTAG	NA	False	NA	NA	False	NA	NA	NA	103879852	103920308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_103880001_103881912_103882039_103882654_103882806_103885319_103885473_103886338_103886473_103888799_103888961_103892523_103892681_103893278_103893354_103895301_103895476_103897924_103898029_103898454_103898570_103899860_103900005_103900618_103900717_103901780_103901884_103903100_103903184_103907160_103907300_103909089_103909255_103910526_103910622_103911576_103911700_103912904_103913092_103913237_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
transcript_141925.known	chr9	+	3444	20	FSM	ENSMUSG00000090150.11	ENSMUST00000047799.13	3444	20	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	6.62112793865633	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATTTTCAGTCCTAAA	NA	False	NA	92	True	NA	NA	NA	103940884	104004924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_103941103_103950820_103950921_103953015_103953142_103953528_103953691_103955761_103955927_103958429_103958572_103958896_103959019_103959989_103960097_103961359_103961487_103967456_103967535_103968790_103968930_103972719_103972828_103974552_103974652_103990660_103990728_103991651_103991738_103992476_103992549_103993363_103993519_104000245_104000363_104001216_104001327_104003780
transcript_141927.nnic	chr9	-	2283	14	NNC	ENSMUSG00000032557.14	novel	2404	12	NA	NA	-16	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	152.222586945339	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACCTGCTTTGAGATTC	NA	False	NA	-16	True	AATAAA	-15	NA	103940349	103923800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_103924188_103924254_103924348_103924414_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
transcript_141931.known	chr9	-	2404	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCTTTGAGATTCTAG	NA	False	NA	-13	True	AATAAA	-18	NA	103940333	103923797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
transcript_141936.nic	chr9	-	1142	9	ISM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	-12	3236	-12	0	5prime_fragment	FALSE	canonical	3	417	junction_6	36.8423584342805	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACACAGTCAGAAAATCAG	NA	False	NA	NA	False	AATACA	-3	NA	103940345	103927033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
transcript_141940.known	chr9	+	1893	8	FSM	ENSMUSG00000032558.20	ENSMUST00000191919.2	1893	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	3.01695886884898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACTAATGTCAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	103879956	103893885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_103880361_103881912_103882039_103882654_103882806_103885319_103885473_103886338_103886473_103888799_103888961_103892523_103892681_103893278
transcript_141941.known	chr9	-	8012	56	FSM	ENSMUSG00000032560.15	ENSMUST00000035170.13	8012	56	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_37	31.3582656798217	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTTGTCCATATCCTT	NA	False	NA	0	True	AATAAA	-16	NA	104140129	104028480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_104029623_104034012_104034113_104037677_104037822_104039471_104039613_104039853_104040034_104042158_104042333_104042715_104042759_104042892_104043063_104044169_104044283_104044612_104044688_104047913_104048014_104049719_104049812_104051547_104051726_104052845_104052963_104053856_104053971_104056000_104056169_104057267_104057448_104058197_104058318_104059226_104059302_104059703_104059889_104061781_104061918_104063909_104063989_104064746_104064863_104066242_104066445_104067519_104067675_104069304_104069351_104069812_104069968_104073221_104073307_104074357_104074561_104075828_104075934_104077635_104077738_104079086_104079150_104080370_104080531_104080613_104080718_104084951_104085106_104086503_104086587_104089959_104090104_104091015_104091112_104091321_104091398_104092844_104092967_104094910_104094968_104095725_104095882_104097069_104097178_104098602_104098703_104105621_104105792_104105879_104105960_104106073_104106241_104107208_104107301_104107839_104107936_104108029_104108237_104110732_104110934_104114334_104114377_104114775_104114926_104115663_104115740_104123958_104124040_104139897
transcript_141944.nic	chr9	-	2521	21	ISM	ENSMUSG00000032560.15	ENSMUST00000035170.13	8012	56	-16	58054	-16	-13313	5prime_fragment	FALSE	canonical	3	149	junction_2	15.4450639364167	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGCAAACTGGGATCTC	NA	False	NA	NA	False	AATAAA	-3	NA	104140145	104086534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_104086587_104089959_104090104_104091015_104091112_104091321_104091398_104092844_104092967_104094910_104094968_104095725_104095882_104097069_104097178_104098602_104098703_104105621_104105792_104105879_104105960_104106073_104106241_104107208_104107301_104107839_104107936_104108029_104108237_104110732_104110934_104114334_104114377_104114775_104114926_104115663_104115740_104123958_104124040_104139897
transcript_141946.nic	chr9	-	2466	20	ISM	ENSMUSG00000032560.15	ENSMUST00000035170.13	8012	56	-16	61482	-16	15590	5prime_fragment	FALSE	canonical	3	149	junction_1	15.7476639431882	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTAAGCGGGTGTTAGGA	NA	False	NA	NA	False	NA	NA	NA	104140145	104089962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_104090104_104091015_104091112_104091321_104091398_104092844_104092967_104094910_104094968_104095725_104095882_104097069_104097178_104098602_104098703_104105621_104105792_104105879_104105960_104106073_104106241_104107208_104107301_104107839_104107936_104108029_104108237_104110732_104110934_104114334_104114377_104114775_104114926_104115663_104115740_104123958_104124040_104139897
transcript_141952.known	chr9	+	3972	10	FSM	ENSMUSG00000032563.17	ENSMUST00000035177.15	3972	10	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	31.6489229040682	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTCATCAAAGATGGTG	NA	False	NA	NA	False	AATAAA	-27	NA	104930437	104957087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
transcript_141953.known	chr9	+	2309	9	FSM	ENSMUSG00000032563.17	ENSMUST00000149243.8	2309	9	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	31.1879383736726	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTATGTCCTTTTTTGTG	NA	False	NA	NA	False	AATAAA	-2	NA	104930437	104953671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360
transcript_141954.known	chr9	+	562	4	FSM	ENSMUSG00000032563.17	ENSMUST00000214036.2	562	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	263.906970140784	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGGGCGGGAAAACCGT	NA	False	NA	NA	False	AATACA	-39	NA	104930468	104934289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_104930712_104931643_104931805_104932793_104932886_104934223
transcript_141955.known	chr9	-	1631	3	FSM	ENSMUSG00000032565.10	ENSMUST00000035179.9	1631	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	2	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTCTGGCTTCAATG	NA	False	NA	NA	False	ATTAAA	-6	NA	105009023	105006530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_105007710_105008491_105008762_105008841
transcript_141957.known	chr9	-	2147	1	FSM	ENSMUSG00000032565.10	ENSMUST00000186933.3	2147	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	105009018	105006871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_105006900_105009000
transcript_141963.known	chr9	-	5642	28	FSM	ENSMUSG00000032570.18	ENSMUST00000112558.10	5642	28	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_27	76.7098107267147	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGTGTGTGTACATAAACA	NA	False	NA	NA	False	AATAAA	-16	NA	105372293	105287636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899_105345017_105347235_105347347_105371613_105371682_105372091
transcript_141964.known	chr9	-	4876	28	FSM	ENSMUSG00000032570.18	ENSMUST00000038118.15	4876	28	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_24	33.8350310750022	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTCCCAGTTAGTATTG	NA	False	NA	3	True	AATAAA	-25	NA	105372332	105288556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899_105345017_105347235_105347347_105371613_105371797_105372091
transcript_14198.known	chr10	+	1057	2	FSM	ENSMUSG00000006732.15	ENSMUST00000135655.2	1057	2	0	0	0	0	multi-exon	FALSE	canonical	3	433	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	126877825	126879871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_126877940_126878928
transcript_141982.known	chr9	-	1449	4	FSM	ENSMUSG00000032570.18	ENSMUST00000176787.2	1449	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	180.31638860625	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAACTAATTT	NA	False	NA	NA	False	ATTAAA	-41	NA	105372304	105346305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_105347347_105370741_105370754_105371613_105371797_105372091
transcript_141987.known	chr9	+	2349	6	FSM	ENSMUSG00000032567.17	ENSMUST00000123807.8	2349	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	22.5086649981735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTATTTATTTATATG	NA	False	NA	NA	False	AATACA	-16	NA	105272613	105282666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_105272865_105273743_105273905_105273996_105275058_105278674_105278886_105280594_105280791_105282197
transcript_141988.known	chr9	+	809	6	FSM	ENSMUSG00000032567.17	ENSMUST00000176350.5	809	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	25.0007999872004	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACGGAAGCCTGGTCCAC	NA	False	NA	NA	False	NA	NA	NA	105272687	105282202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_105272865_105273743_105273905_105278674_105278886_105279916_105279976_105280594_105280791_105282197
transcript_14199.known	chr10	-	3037	4	FSM	ENSMUSG00000040502.6	ENSMUST00000040307.6	3037	4	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_3	2.16024689946929	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCAGAGGGCTTTCTTAC	9919	False	NA	1	True	ATTAAA	-28	NA	126896053	126890879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_126892781_126893300_126893494_126894088_126894245_126895266
transcript_141990.nic	chr9	+	2596	6	NIC	ENSMUSG00000032567.17	novel	2349	6	NA	NA	-73	0	intron_retention	FALSE	canonical	3	20	junction_4	18.4932420089069	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTATTTATTTATATG	NA	False	NA	NA	False	AATACA	-16	NA	105272517	105282666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_105272865_105273743_105275058_105278674_105278886_105279916_105279976_105280594_105280791_105282197
transcript_141996.known	chr9	+	2755	5	FSM	ENSMUSG00000032567.17	ENSMUST00000035181.10	2755	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	8.45576726264388	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGGGTTTTTTTAAAT	NA	False	NA	NA	False	CATAAA	-29	NA	105272590	105282957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_105272865_105273743_105275058_105278674_105278886_105280594_105280791_105282197
transcript_1420.known	chr1	+	2953	21	FSM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_5	51.2145243070752	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	8	True	TATAAA	-24	NA	45834325	45862779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
transcript_142005.nic	chr9	+	4549	20	NIC	ENSMUSG00000032571.15	novel	4929	15	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	35.7025259626095	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGAGTTGGGATTTTT	NA	False	NA	24	True	AGTAAA	-15	NA	105520159	105564848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_105520227_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
transcript_142007.known	chr9	+	4711	20	FSM	ENSMUSG00000032571.15	ENSMUST00000065778.13	4711	20	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	21.4158146964708	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGATTTTTTTGGAGAA	NA	False	NA	32	True	AGTAAA	-23	NA	105520368	105564856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_105520590_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
transcript_142010.known	chr9	+	4756	20	FSM	ENSMUSG00000032571.15	ENSMUST00000191268.7	4756	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	37.5737870553956	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGGGAAGATGACCCGG	NA	False	NA	-94	True	NA	NA	NA	105520228	105564730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_105520621_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
transcript_142023.known	chr9	+	3747	9	FSM	ENSMUSG00000020257.14	ENSMUST00000020490.13	3747	9	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	24.1958157539687	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCATTGAGTTTCTGTA	NA	False	NA	54	True	NA	NA	NA	106048126	106068338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106048579_106053811_106053910_106057764_106057832_106060814_106060915_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
transcript_142028.nic	chr9	+	3740	8	NIC	ENSMUSG00000020257.14	novel	3747	9	NA	NA	-93	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_3	76.5447714792874	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCATTGAGTTTCTGTA	NA	False	NA	54	True	NA	NA	NA	106048033	106068338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_106048579_106053811_106053910_106057764_106057832_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
transcript_142035.nnic	chr9	-	1756	10	NNC	ENSMUSG00000020253.16	novel	1846	10	NA	NA	-9	0	intron_retention	FALSE	canonical	2	9	junction_8	40.4859372018373	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTCTCTCTCTTTTA	3834	False	NA	-4	True	NA	NA	NA	106076483	106072149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106074088_106074425_106074539_106074940_106075097_106075299_106075424_106076168
transcript_142036.known	chr9	-	1846	10	FSM	ENSMUSG00000020253.16	ENSMUST00000140761.9	1846	10	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_7	13.9682178931713	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTCTCTCTCTTTTA	3843	False	NA	-4	True	NA	NA	NA	106076474	106072149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106074088_106074425_106074539_106074940_106075196_106075299_106075424_106076168
transcript_142039.nic	chr9	-	2257	9	NIC	ENSMUSG00000020253.16	novel	1846	10	NA	NA	-9	0	intron_retention	FALSE	canonical	3	111	junction_3	11.9556472012183	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTCTCTCTCTTTTA	3834	False	NA	-4	True	NA	NA	NA	106076483	106072149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106074088_106074425_106075196_106075299_106075424_106076168
transcript_142044.nic	chr9	-	2595	8	NIC	ENSMUSG00000020253.16	novel	1846	10	NA	NA	-9	0	intron_retention	FALSE	canonical	3	111	junction_3	12.0203908388358	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTCTCTCTCTTTTA	3834	False	NA	-4	True	NA	NA	NA	106076483	106072149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106075196_106075299_106075424_106076168
transcript_14205.known	chr10	+	2053	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	0	0	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	2665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCATACAGAGAAACCCTGT	NA	False	NA	NA	False	NA	NA	NA	126899402	126903789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
transcript_142052.known	chr9	+	1596	9	FSM	ENSMUSG00000023277.14	ENSMUST00000024047.12	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_8	33.0111250186963	777	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	19	True	AATAAA	-16	NA	106080306	106092588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
transcript_142064.known	chr9	-	3399	11	FSM	ENSMUSG00000032786.17	ENSMUST00000141118.9	3399	11	0	0	0	0	multi-exon	TRUE	canonical	3	139	junction_7	18.0612845611822	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCTTGTCTTGTTATGA	7778	False	NA	NA	False	NA	NA	NA	106125853	106110656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115439_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
transcript_142066.known	chr9	-	2129	11	FSM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	54.5879107495423	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAGTCCTGGTTAGTGTG	8576	False	NA	-14	True	AATAAA	-31	NA	106125055	106111125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115436_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
transcript_142068.known	chr9	+	2337	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCTTTGCCTGATCTT	9557	False	NA	22	True	AGTAAA	-16	NA	106158259	106227720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
transcript_142069.nic	chr9	+	1644	11	NIC	ENSMUSG00000023345.18	novel	2337	11	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	88.6248272212702	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCCACATCTTACCCAG	9578	False	NA	7	True	AATAAA	-19	NA	106158280	106227076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207099_106207216_106226880
transcript_142070.known	chr9	+	1242	10	FSM	ENSMUSG00000023345.18	ENSMUST00000191434.2	1242	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	133.805644938037	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTCTGGGATTGGGTGC	9876	False	NA	22	True	AATAAA	-34	NA	106158578	106227091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106158656_106160053_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106226880
transcript_142073.known	chr9	+	3213	3	FSM	ENSMUSG00000053716.10	ENSMUST00000172306.3	3213	3	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	12	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTCCTGGTGTTCAATA	NA	False	NA	38	True	AATAAA	-19	NA	106245830	106252923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106246523_106247899_106248335_106250837
transcript_142075.known	chr9	+	583	4	FSM	ENSMUSG00000048758.15	ENSMUST00000098994.7	583	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2179.51131117862	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGATGACCAGTGTC	NA	False	NA	-57	True	NA	NA	NA	106306736	106308707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106306776_106307174_106307214_106307506_106307572_106308267
transcript_142077.known	chr9	+	466	4	FSM	ENSMUSG00000048758.15	ENSMUST00000217081.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	2158.78427721613	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCATCAAGGCCCTGG	NA	False	NA	NA	False	NA	NA	NA	106306760	106308371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106307013_106307168_106307214_106307506_106307572_106308267
transcript_142079.known	chr9	+	710	4	FSM	ENSMUSG00000048758.15	ENSMUST00000059802.7	710	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2185.50085792708	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGTCTGTTGTCATA	NA	False	NA	2	True	AATAAA	-18	NA	106306737	106308766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106306839_106307168_106307214_106307506_106307572_106308267
transcript_142080.nic	chr9	-	1533	15	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	284	junction_14	59.3909565025326	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315535	106310188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
transcript_142081.known	chr9	-	1529	15	FSM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	78.143510052117	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGGACAGTCATGGAA	NA	False	NA	-7	True	AATAAA	-27	NA	106315518	106310179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
transcript_142093.known	chr9	-	1832	14	FSM	ENSMUSG00000023262.14	ENSMUST00000187324.8	1832	14	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_13	61.5898823628318	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATACTGTGGAC	NA	False	NA	-17	True	AATAAA	-17	NA	106315360	106310189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106314000_106314087_106314153_106314827_106314933_106315331
transcript_142097.known	chr9	-	1256	7	FSM	ENSMUSG00000042210.18	ENSMUST00000048685.13	1256	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	104.56165113888	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324877	106317249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322851_106322969_106323029_106324729
transcript_142099.nic	chr9	-	1286	7	NIC	ENSMUSG00000042210.18	novel	1262	6	NA	NA	-23	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_2	104.893067242576	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324900	106317252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
transcript_14210.known	chr10	+	2038	7	FSM	ENSMUSG00000006728.13	ENSMUST00000140254.8	2038	7	0	0	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	424.742274797318	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899482	126903166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
transcript_142101.nic	chr9	-	1340	7	NIC	ENSMUSG00000042210.18	novel	1262	6	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.893067242576	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324900	106317252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_106317604_106317819_106318110_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
transcript_142107.known	chr9	+	1745	4	FSM	ENSMUSG00000042073.16	ENSMUST00000048527.15	1745	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTTTGCTGTCTCCGG	NA	False	NA	13	True	AATAAA	-20	NA	106325573	106330122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106325909_106327202_106327431_106328591_106328834_106329182
transcript_142121.known	chr9	+	2035	13	FSM	ENSMUSG00000023495.14	ENSMUST00000024260.14	2035	13	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	32.902212016148	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1600	False	NA	27	True	AATAAA	-20	NA	106331040	106341211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
transcript_142122.nic	chr9	+	1871	13	NIC	ENSMUSG00000023495.14	novel	2035	13	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_12	99.8749217771909	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1567	False	NA	27	True	AATAAA	-20	NA	106331007	106341211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340526
transcript_142150.known	chr9	+	1586	15	FSM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_11	74.9465115388084	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTGTTCCTCTGGTTT	NA	False	NA	23	True	ATTAAA	-23	NA	106354467	106362623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
transcript_142154.known	chr9	+	1611	14	FSM	ENSMUSG00000041506.16	ENSMUST00000125630.8	1611	14	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_10	77.2574272104087	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTTCTCCCTTGTTCC	NA	False	NA	15	True	ATTAAA	-15	NA	106354516	106362615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
transcript_142161.known	chr9	-	2495	11	FSM	ENSMUSG00000023249.16	ENSMUST00000123555.8	2495	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCTGTCCGACTGAAT	NA	False	NA	NA	False	NA	NA	NA	106353575	106347825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351720_106351878_106352068_106352221_106352348_106352997_106353182_106353280
transcript_142162.known	chr9	-	2030	11	FSM	ENSMUSG00000023249.16	ENSMUST00000112479.9	2030	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	3.2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACGTTTTGAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	106353868	106348187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351735_106351878_106352068_106352221_106352348_106352997_106353182_106353691
transcript_142173.known	chr9	-	1896	6	FSM	ENSMUSG00000040813.17	ENSMUST00000163441.8	1896	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	161.744242555956	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	7972	False	NA	0	True	AATAAA	-28	NA	106563022	106535944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562442
transcript_142174.known	chr9	-	1364	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	0	0	0	0	multi-exon	TRUE	canonical	3	151	junction_5	120.179865202121	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	8113	False	NA	0	True	AATAAA	-28	NA	106562881	106535944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
transcript_142175.known	chr9	-	1391	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	67.9187750183997	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7880	False	NA	-6	True	AATAAA	-22	NA	106563114	106535950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
transcript_142181.known	chr9	-	9305	22	FSM	ENSMUSG00000040661.7	ENSMUST00000046502.7	9305	22	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_10	7.57277616039918	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTTTGGTCAAGAAAT	7295	False	NA	-2	True	AATAAA	-11	NA	106666393	106565280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106570910_106573070_106573164_106575316_106575407_106577693_106577894_106579843_106580041_106580690_106580864_106581263_106581470_106582966_106583067_106585413_106585533_106587532_106587652_106587866_106588119_106589530_106589709_106590442_106590786_106593259_106593457_106594384_106594519_106594947_106595131_106596111_106596339_106596806_106596924_106597523_106597664_106599914_106600114_106631143_106631338_106666178
transcript_142184.nic	chr9	-	3159	18	ISM	ENSMUSG00000040661.7	ENSMUST00000046502.7	9305	22	-24	14721	-24	-14013	5prime_fragment	FALSE	canonical	3	17	junction_6	7.36868901872452	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCACAAGCTGACCAAAGC	7271	False	NA	NA	False	NA	NA	NA	106666417	106580001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_106580041_106580690_106580864_106581263_106581470_106582966_106583067_106585413_106585533_106587532_106587652_106587866_106588119_106589530_106589709_106590442_106590786_106593259_106593457_106594384_106594519_106594947_106595131_106596111_106596339_106596806_106596924_106597523_106597664_106599914_106600114_106631143_106631338_106666178
transcript_142187.known	chr9	-	2418	1	FSM	ENSMUSG00000040661.7	ENSMUST00000191300.2	2418	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATTTT	7313	False	NA	NA	False	NA	NA	NA	106666375	106663957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106664000_106666400
transcript_142188.known	chr9	-	9063	53	FSM	ENSMUSG00000039716.13	ENSMUST00000044532.11	9063	53	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.98981258441743	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACTGATTTCACTGAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	107109108	106770023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106773103_106773934_106774018_106777905_106777994_106778969_106779089_106783831_106783980_106784428_106784568_106785614_106785737_106788449_106788567_106788688_106788773_106789369_106789550_106790094_106790182_106790305_106790473_106791722_106791865_106807218_106807324_106809119_106809207_106810173_106810323_106815099_106815194_106815316_106815378_106818481_106818578_106818696_106818724_106821105_106821192_106829510_106829660_106832502_106832562_106832815_106832917_106833276_106833353_106835605_106835701_106841905_106842005_106844275_106844423_106846951_106847080_106850952_106851146_106855802_106855974_106863192_106863275_106866606_106866708_106868281_106868366_106870165_106870264_106870593_106870766_106871253_106871361_106872018_106872182_106874092_106874218_106882529_106882656_106883989_106884079_106900926_106901075_106902519_106902581_106909474_106909557_106932648_106932804_106933321_106933364_106939197_106939283_106959573_106959723_106985558_106985656_107011985_107012042_107036613_107036655_107056279_107056364_107108670
transcript_14219.known	chr10	-	1556	6	FSM	ENSMUSG00000006736.10	ENSMUST00000060991.6	1556	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_1	41.1698919114442	554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTCTTGTTTTCCTGTA	NA	False	NA	0	True	AATAAA	-15	NA	126906133	126903148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
transcript_142191.nnic	chr9	+	5681	25	NNC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	7	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_24	84.0237131707472	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGCCTTTCCTTGTTTTC	NA	False	NA	9	True	AATAAA	-20	NA	106699079	106758184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132_106757415_106757466
transcript_142194.nic	chr9	+	5740	24	NIC	ENSMUSG00000040325.17	novel	5539	23	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	304	junction_23	40.0622389135641	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTTTTCTTTTACC	NA	False	NA	16	True	AATAAA	-27	NA	106699079	106758191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132
transcript_142197.known	chr9	+	4945	23	FSM	ENSMUSG00000040325.17	ENSMUST00000159645.8	4945	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_22	85.1436802175695	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCAGGCATTTCTAACGA	NA	False	NA	NA	False	TATAAA	-21	NA	106699072	106757642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106757132
transcript_142204.known	chr9	-	6511	1	FSM	ENSMUSG00000074102.5	ENSMUST00000055843.9	6511	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTGATTTGTAATTTC	NA	False	NA	40	True	AATAAA	-23	NA	106764627	106758116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_106758100_106764600
transcript_142206.nnic	chr9	-	2809	12	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	-41	-1	at_least_one_novel_splicesite	TRUE	canonical	3	142	junction_1	26.8365114556165	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCAATGATTCCTGGGTT	NA	False	NA	-11	True	AATAAA	-15	NA	107167117	107132134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_107132548_107132586_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
transcript_142207.known	chr9	-	2816	11	FSM	ENSMUSG00000032577.17	ENSMUST00000035194.8	2816	11	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_10	23.3752005338992	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTGGGTTTCTTTATGT	NA	False	NA	-2	True	AATAAA	-24	NA	107167076	107132125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
transcript_142218.known	chr9	-	1000	3	FSM	ENSMUSG00000032577.17	ENSMUST00000141596.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	78.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTGGCTGGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	107166978	107161872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107162341_107166318_107166596_107166723
transcript_142219.known	chr9	+	2850	3	FSM	ENSMUSG00000032578.8	ENSMUST00000085102.6	2850	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	1	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGCGTGGTTTGACCTC	NA	False	NA	NA	False	AATAAA	-43	NA	107173224	107179186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107174234_107177122_107177344_107177566
transcript_142220.known	chr9	+	2742	2	FSM	ENSMUSG00000032578.8	ENSMUST00000168260.2	2742	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAATAAACAACC	NA	False	NA	NA	False	NA	NA	NA	107173908	107179983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107174234_107177566
transcript_142226.known	chr9	-	2192	11	FSM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_9	21.6296093353532	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACTGCCTCTTTTCACG	NA	False	NA	NA	False	NA	NA	NA	107215549	107204282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199_107214578_107215479
transcript_142239.known	chr9	+	5183	39	FSM	ENSMUSG00000010066.16	ENSMUST00000085092.12	5183	39	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	2.42448269605916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAACAAACGTATACAGAAA	NA	False	NA	NA	False	TATAAA	-12	NA	107277078	107406192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107277483_107303251_107303334_107342751_107342869_107374658_107374719_107383146_107383192_107386393_107386536_107389199_107389332_107389501_107389560_107390252_107390304_107390431_107390532_107390671_107390831_107391033_107391142_107391243_107391323_107391830_107391881_107392058_107392149_107392349_107392422_107392617_107392693_107394293_107394369_107394449_107394522_107394611_107394684_107394789_107394852_107395391_107395469_107396377_107396399_107399321_107399383_107401293_107401392_107401596_107401688_107401810_107401874_107402029_107402134_107402355_107402455_107402542_107402632_107402811_107402860_107403099_107403172_107403261_107403415_107403541_107403595_107403683_107403740_107403886_107404014_107404135_107404246_107404352_107404436_107404519
transcript_142240.known	chr9	+	5783	38	FSM	ENSMUSG00000010066.16	ENSMUST00000010210.13	5783	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	2.42792374934873	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGTTTCTATCCACTG	NA	False	NA	NA	False	ATTAAA	-22	NA	107276810	107406542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107277483_107303251_107303334_107342751_107342869_107374658_107374719_107383146_107383192_107386393_107386536_107389199_107389332_107389501_107389560_107390252_107390304_107390431_107390532_107390671_107390831_107391033_107391142_107391243_107391323_107391830_107391881_107392058_107392149_107392349_107392422_107392617_107392693_107394293_107394369_107394449_107394522_107394611_107394684_107394789_107394852_107395391_107395469_107399321_107399383_107401293_107401392_107401596_107401688_107401810_107401874_107402029_107402134_107402355_107402455_107402542_107402632_107402808_107402860_107403099_107403172_107403261_107403415_107403541_107403595_107403683_107403740_107403886_107404014_107404135_107404246_107404352_107404436_107404519
transcript_142242.known	chr9	+	2194	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTGTGCAGCCCTCTC	NA	False	NA	33	True	AATAAA	-38	NA	107411143	107415872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107412529_107415063
transcript_142243.known	chr9	-	1162	4	FSM	ENSMUSG00000037190.13	ENSMUST00000195235.6	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	4.08248290463863	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCGGGAGGAGCAGCGC	NA	False	NA	-20	True	AATAAA	-19	NA	107419392	107416773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107417585_107418201_107418240_107418695_107418850_107419233
transcript_142244.known	chr9	-	658	4	FSM	ENSMUSG00000037190.13	ENSMUST00000194967.2	658	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	45.536310297998	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGCCAGCCTCCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	107419326	107417240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107417585_107418201_107418269_107418695_107418850_107419233
transcript_142245.known	chr9	-	637	3	FSM	ENSMUSG00000037190.13	ENSMUST00000194906.2	637	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	54	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGTTATTACGAAGGCT	NA	False	NA	NA	False	NA	NA	NA	107419323	107417075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107417585_107418201_107418240_107419233
transcript_142247.known	chr9	+	1441	11	FSM	ENSMUSG00000010057.9	ENSMUST00000010201.9	1441	11	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.6721891691319	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAGTACTGCTTCAGCC	NA	False	NA	13	True	AATAAA	-24	NA	107419424	107422905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107421834_107421945_107422040_107422112_107422231_107422443_107422587_107422689
transcript_142252.known	chr9	+	1736	9	FSM	ENSMUSG00000010057.9	ENSMUST00000193628.6	1736	9	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.1235954169504	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTGGAATATTGAGTA	NA	False	NA	2	True	AATAAA	-13	NA	107419443	107422894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107422040_107422112_107422587_107422689
transcript_142259.known	chr9	+	1787	6	FSM	ENSMUSG00000010067.14	ENSMUST00000093786.9	1787	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.6723688902848	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGACTCTATAGATGTG	NA	False	NA	13	True	AATAAA	-20	NA	107428753	107439466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107429046_107431336_107431444_107434651_107434757_107434968_107435267_107435385_107435502_107438597
transcript_142260.known	chr9	+	1727	5	FSM	ENSMUSG00000010067.14	ENSMUST00000010211.7	1727	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	9.63068014212911	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTTGGACTCTATAGA	NA	False	NA	9	True	AATAAA	-16	NA	107431781	107439462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107432125_107434651_107434757_107434968_107435267_107435385_107435502_107438597
transcript_142272.known	chr9	+	1665	3	FSM	ENSMUSG00000010054.5	ENSMUST00000010198.5	1665	3	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_1	4.5	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGAGTGGCGTCCAGTG	NA	False	NA	20	True	AATAAA	-21	NA	107440453	107443311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107440732_107441774_107441896_107442045
transcript_142274.known	chr9	+	1893	4	FSM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	7.31816613336672	355	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTGTCTTTTTCTGC	NA	False	NA	15	True	ATTAAA	-17	NA	107446315	107449975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256
transcript_142277.known	chr9	+	2706	5	FSM	ENSMUSG00000010051.16	ENSMUST00000112387.9	2706	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	13.6450540489952	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACAGTGCAGT	NA	False	NA	NA	False	NA	NA	NA	107454125	107458909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298_107456585_107457655
transcript_142282.known	chr9	+	3014	4	FSM	ENSMUSG00000010051.16	ENSMUST00000010195.14	3014	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	10.4029910228848	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGCCTGTGGTCCCCAA	NA	False	NA	31	True	NA	NA	NA	107454156	107458177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298
transcript_142286.nic	chr9	+	2357	3	ISM	ENSMUSG00000010051.16	ENSMUST00000010195.14	3014	4	-71	857	-40	559	intron_retention	FALSE	canonical	3	34	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCAAACAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	107454085	107457320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_107454278_107454751_107455676_107456079
transcript_142289.known	chr9	+	2078	1	FSM	ENSMUSG00000010051.16	ENSMUST00000184695.2	2078	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAACAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	107456795	107458873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107456800_107458900
transcript_142296.known	chr9	+	2056	12	FSM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	0	0	0	0	multi-exon	TRUE	canonical	3	631	junction_11	35.5716016363504	1270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464840	107470237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
transcript_142297.known	chr9	+	2054	11	FSM	ENSMUSG00000010048.11	ENSMUST00000194932.6	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_10	36.8511872264653	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464924	107470237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
transcript_142302.known	chr9	-	3410	21	FSM	ENSMUSG00000057969.16	ENSMUST00000102530.8	3410	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	19.0711824489202	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAATGGCCCCAGCAG	4361	False	NA	-22	True	AATAAA	-16	NA	107486398	107475551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107483748_107484134_107484232_107484292_107486319
transcript_142307.known	chr9	-	3191	20	FSM	ENSMUSG00000057969.16	ENSMUST00000102532.10	3191	20	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_18	17.1961150028469	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGCTGGTTCCAGTGAG	4331	False	NA	-2	True	ATTAAA	-15	NA	107486428	107475415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107484232_107484292_107486319
transcript_142312.known	chr9	-	2875	18	FSM	ENSMUSG00000057969.16	ENSMUST00000102529.10	2875	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	14.4607809903619	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGGAATGGCCCCAGC	8158	False	NA	-24	True	AATAAA	-14	NA	107482601	107475553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482470
transcript_142315.known	chr9	-	1777	9	FSM	ENSMUSG00000032562.14	ENSMUST00000192615.6	1777	9	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	364.681860496241	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	4825	False	NA	0	True	AATAAA	-24	NA	107512511	107491323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107491915_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
transcript_142317.known	chr9	-	2215	9	FSM	ENSMUSG00000032562.14	ENSMUST00000055704.12	2215	9	0	0	0	0	multi-exon	FALSE	canonical	3	1026	junction_1	123.439193026364	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	4770	False	NA	0	True	AATAAA	-24	NA	107512566	107491323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
transcript_142325.known	chr9	-	698	4	FSM	ENSMUSG00000032562.14	ENSMUST00000193835.2	698	4	0	0	0	0	multi-exon	FALSE	canonical	3	1229	junction_3	93.2892753154878	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGGCCTGGAGAAACGAC	4803	False	NA	NA	False	NA	NA	NA	107512533	107496778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107497057_107497245_107497388_107497618_107497662_107512298
transcript_142327.known	chr9	-	2463	16	FSM	ENSMUSG00000010064.16	ENSMUST00000193932.6	2463	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	1.9731531449265	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGACCGATTGTGTTCTA	9779	False	NA	NA	False	TATAAA	-9	NA	107544625	107528359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107529238_107529327_107529432_107532221_107532367_107532454_107532580_107532783_107532885_107533133_107533214_107533298_107533470_107533654_107533714_107533793_107533877_107534828_107534911_107535008_107535102_107535192_107535267_107535835_107535952_107536130_107536210_107536293_107536444_107544502
transcript_142336.nic	chr9	-	3417	25	NIC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_24	145.293470976274	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	9697	False	NA	-6	True	AAGAAA	-12	NA	107648203	107617698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107647750
transcript_142337.known	chr9	-	3064	25	FSM	ENSMUSG00000032580.13	ENSMUST00000035199.13	3064	25	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_9	145.554250815823	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	9714	False	NA	-6	True	AAGAAA	-12	NA	107648186	107617698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626996_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_14234.known	chr10	-	2627	15	FSM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	48.7011398265807	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCAGGCTCTGTGGG	NA	False	NA	-4	True	AATAAA	-14	NA	126957000	126931520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_126932242_126932498_126932612_126932783_126932949_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
transcript_142342.known	chr9	-	2986	24	FSM	ENSMUSG00000032580.13	ENSMUST00000182371.8	2986	24	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_19	139.730783549852	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	9721	False	NA	-6	True	AAGAAA	-12	NA	107648179	107617698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_142352.nic	chr9	-	1878	19	ISM	ENSMUSG00000032580.13	ENSMUST00000182659.8	3205	25	-47	4813	-47	10	5prime_fragment	FALSE	canonical	3	262	junction_13	119.012863709748	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAACAGCTTTCAAC	9658	False	NA	NA	False	AAGAAA	-2	NA	107648242	107622382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_142354.nic	chr9	-	2239	18	NIC	ENSMUSG00000032580.13	novel	1704	18	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_17	162.989396135439	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAAGAGCAAAACTGCTC	9655	False	NA	18	True	AAGAAA	-6	NA	107648245	107623242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107647647
transcript_142355.nic	chr9	-	2094	18	NIC	ENSMUSG00000032580.13	novel	1704	18	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_17	160.695094806312	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAAGAGCAAAACTGCTC	9697	False	NA	18	True	AAGAAA	-6	NA	107648203	107623242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107647750
transcript_142356.known	chr9	-	1704	18	FSM	ENSMUSG00000032580.13	ENSMUST00000182421.8	1704	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_15	166.009379815874	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAAGAGCAAAACTGCTC	9750	False	NA	18	True	AAGAAA	-6	NA	107648150	107623242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642846_107644741_107644908_107646759_107646826_107648083
transcript_142363.known	chr9	-	897	4	FSM	ENSMUSG00000032580.13	ENSMUST00000182073.8	897	4	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	29.4278779391243	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACACAGAGAAACCCTGT	9712	False	NA	NA	False	NA	NA	NA	107648188	107642289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107642850_107644741_107644908_107646759_107646826_107648083
transcript_142365.nic	chr9	-	4120	22	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_21	113.526006690147	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7491	False	NA	NA	False	AATAAA	-22	NA	107750042	107650757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107738821_107738929_107749847
transcript_142371.known	chr9	-	3716	21	FSM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_19	71.8828734817968	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7513	False	NA	NA	False	AATAAA	-18	NA	107750020	107650761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
transcript_142374.known	chr9	-	3999	21	FSM	ENSMUSG00000032582.15	ENSMUST00000035201.13	3999	21	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_19	75.7708882091269	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7505	False	NA	NA	False	AATAAA	-22	NA	107750028	107650757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107749847
transcript_142385.nic	chr9	-	3298	19	ISM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	-37	4447	-29	-54	5prime_fragment	FALSE	canonical	3	125	junction_17	68.4657254073566	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAATGACCGAAGGGAAAA	7476	False	NA	NA	False	AAGAAA	-3	NA	107750057	107655208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
transcript_14239.known	chr10	-	2458	14	FSM	ENSMUSG00000040462.14	ENSMUST00000080975.6	2458	14	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_9	22.2351605990131	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCAGGCTCTGTGGGGA	NA	False	NA	-2	True	AATAAA	-16	NA	126956994	126931518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_126932242_126932498_126932612_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
transcript_142395.nnic	chr9	-	2244	17	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_15	79.7133291473264	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7476	False	NA	NA	False	AATAAA	-22	NA	107750057	107650757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
transcript_142407.nnic	chr9	-	1785	15	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	-29	-54	combination_of_known_splicesites	FALSE	canonical	3	80	junction_13	78.7969490759222	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAATGACCGAAGGGAAAA	7476	False	NA	NA	False	AAGAAA	-3	NA	107750057	107655208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
transcript_142408.nic	chr9	-	2807	15	ISM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	-37	13736	-29	281	5prime_fragment	FALSE	canonical	3	125	junction_13	67.4606839392473	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCTAAAAGAGATGGCAAG	7476	False	NA	NA	False	AAGAAA	-38	NA	107750057	107664497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
transcript_142411.nic	chr9	-	3078	15	ISM	ENSMUSG00000032582.15	ENSMUST00000035201.13	3999	21	-29	13740	-29	281	5prime_fragment	FALSE	canonical	3	99	junction_13	72.674596240884	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCTAAAAGAGATGGCAAG	7476	False	NA	NA	False	AAGAAA	-38	NA	107750057	107664497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107749847
transcript_142413.nic	chr9	-	3027	15	ISM	ENSMUSG00000032582.15	ENSMUST00000035201.13	3999	21	-29	13791	-29	230	5prime_fragment	FALSE	canonical	3	99	junction_13	72.674596240884	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAGGAAAAGAAATCTACC	7476	False	NA	NA	False	AAGAAA	-1	NA	107750057	107664548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107749847
transcript_142421.nnic	chr9	-	1294	11	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	-29	281	combination_of_known_splicesites	FALSE	canonical	3	80	junction_9	83.9512358455788	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCTAAAAGAGATGGCAAG	7476	False	NA	NA	False	AAGAAA	-38	NA	107750057	107664497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
transcript_142422.nnic	chr9	-	1243	11	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	-29	230	combination_of_known_splicesites	FALSE	canonical	3	80	junction_9	83.9512358455788	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAGGAAAAGAAATCTACC	7476	False	NA	NA	False	AAGAAA	-1	NA	107750057	107664548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
transcript_142423.known	chr9	-	4397	1	FSM	ENSMUSG00000032582.15	ENSMUST00000182445.2	4397	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACATTAAAAAAAAAAAAAGT	7097	False	NA	NA	False	NA	NA	NA	107750436	107746039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107746000_107750400
transcript_142426.known	chr9	+	2042	6	FSM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	6.62117814289874	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTGTCATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	107765380	107780338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107765602_107775870_107776011_107777225_107777715_107778393_107779160_107779814_107779963_107780060
transcript_142431.known	chr9	+	3277	11	FSM	ENSMUSG00000032936.14	ENSMUST00000035700.14	3277	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	7.3729234364667	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTTGCCTTTGCTTCCT	NA	False	NA	18	True	AATAAA	-26	NA	107812872	107826890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823064_107823277_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
transcript_142433.known	chr9	+	3253	10	FSM	ENSMUSG00000032936.14	ENSMUST00000192318.2	3253	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	6.48264539813992	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTCTGGCCACCCTCT	NA	False	NA	4	True	AATAAA	-12	NA	107813096	107826876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
transcript_142456.known	chr9	+	2706	15	FSM	ENSMUSG00000032586.10	ENSMUST00000049348.9	2706	15	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_7	39.1366001255571	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTTTGGCAGAGTATTT	NA	False	NA	4	True	NA	NA	NA	107828154	107849469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
transcript_142467.nic	chr9	+	2588	14	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	-29	0	intron_retention	TRUE	canonical	3	271	junction_2	36.9687217865663	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGGCTCTGGCTGTATA	NA	False	NA	13	True	AATAAA	-14	NA	107828125	107848724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
transcript_142488.nic	chr9	+	1866	7	NIC	ENSMUSG00000032594.12	novel	2157	6	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_5	118.632134488651	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAGCCTGGAATCCAT	6808	False	NA	2	True	ACTAAA	-13	NA	107879787	107923308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922444_107922513_107922661
transcript_142489.nic	chr9	+	1900	7	NIC	ENSMUSG00000032594.12	novel	4559	6	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_5	118.632134488651	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGCAGAACATTTGTCC	6808	False	NA	36	True	TATAAA	-6	NA	107879787	107923342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922444_107922513_107922661
transcript_142491.nic	chr9	+	4535	7	NIC	ENSMUSG00000032594.12	novel	4559	6	NA	NA	-40	-4	combination_of_known_junctions	FALSE	canonical	3	52	junction_5	118.632134488651	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTCTGTCCAAGTCTGT	6808	False	NA	13	True	AATAAA	-13	NA	107879787	107925977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922444_107922513_107922661
transcript_142492.nic	chr9	+	4344	6	NIC	ENSMUSG00000032594.12	novel	4559	6	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	111.90781920849	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	6808	False	NA	17	True	AATAAA	-17	NA	107879787	107925981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_107880022_107901301_107901523_107909197_107909409_107918103_107918286_107921923_107922100_107922661
transcript_142495.known	chr9	+	4559	6	FSM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	50.8700304698159	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	6720	False	NA	17	True	AATAAA	-17	NA	107879699	107925981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922661
transcript_142497.known	chr9	+	2157	6	FSM	ENSMUSG00000032594.12	ENSMUST00000167159.9	2157	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	93.84540478894	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAGCCTGGAATCCAT	6862	False	NA	2	True	ACTAAA	-13	NA	107879841	107923308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922513_107922661
transcript_142504.nic	chr9	+	2363	5	ISM	ENSMUSG00000032594.12	ENSMUST00000167159.9	2157	6	-54	-3	-40	3	intron_retention	FALSE	canonical	3	292	junction_3	27.3541587331799	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGCCTGGAATCCATATA	6808	False	NA	5	True	ACTAAA	-16	NA	107879787	107923311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923
transcript_142505.nic	chr9	+	2432	5	ISM	ENSMUSG00000032594.12	ENSMUST00000167159.9	2157	6	-54	-72	-40	38	intron_retention	FALSE	canonical	3	292	junction_3	27.3541587331799	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGGCTGTGACTGCT	6808	False	NA	74	True	TATAAA	-44	NA	107879787	107923380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923
transcript_142507.nic	chr9	+	5033	5	ISM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	88	0	-40	0	intron_retention	FALSE	canonical	3	292	junction_3	27.3541587331799	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	6808	False	NA	17	True	AATAAA	-17	NA	107879787	107925981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923
transcript_142512.known	chr9	-	1025	2	FSM	ENSMUSG00000042106.6	ENSMUST00000048568.6	1025	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGTCCCATACTCCTG	9756	False	NA	NA	False	AATAAA	-17	NA	107863078	107861421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107862264_107862895
transcript_142515.known	chr9	-	4722	39	FSM	ENSMUSG00000041528.16	ENSMUST00000047746.13	4722	39	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_29	21.0582229417063	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCCCTGGGCCCGCTC	NA	False	NA	-7	True	ATTAAA	-11	NA	107956500	107928875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941101_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946482_107946870_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107955998
transcript_142516.known	chr9	-	4309	39	FSM	ENSMUSG00000041528.16	ENSMUST00000178267.8	4309	39	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_17	14.098780914274	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCCCTGGGCCCGCTC	NA	False	NA	-7	True	ATTAAA	-11	NA	107956574	107928875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941119_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107956467
transcript_14252.nic	chr10	-	1563	12	ISM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	-12	2357	-12	0	5prime_fragment	FALSE	canonical	3	172	junction_7	18.8219144299914	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCCAGAGCTTGTGCAAA	NA	False	NA	NA	False	NA	NA	NA	126957012	126933877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
transcript_142523.nic	chr9	-	3827	35	ISM	ENSMUSG00000041528.16	ENSMUST00000160649.8	3919	37	12	3665	12	0	5prime_fragment	FALSE	canonical	3	35	junction_13	14.6132671861795	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACTGGTGATGTGTAAAC	NA	False	NA	NA	False	AATGAA	-35	NA	107956562	107933097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941119_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107956467
transcript_142526.known	chr9	+	2262	18	FSM	ENSMUSG00000032591.16	ENSMUST00000035211.14	2262	18	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_13	9.09998288906715	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGTGCTTCTTAGTTTC	6663	False	NA	18	True	CATAAA	-23	NA	107957634	107962202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
transcript_142527.known	chr9	+	2209	18	FSM	ENSMUSG00000032591.16	ENSMUST00000162886.2	2209	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	12.461150701946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGTATAGAGTGCTTC	6681	False	NA	10	True	CATAAA	-15	NA	107957652	107962194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959690_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
transcript_142528.nnic	chr9	+	2340	18	NNC	ENSMUSG00000032591.16	novel	2262	18	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	12.461150701946	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGTGCTTCTTAGTTTC	6654	False	NA	18	True	CATAAA	-23	NA	107957625	107962202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959590_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
transcript_142530.nic	chr9	+	2506	17	NIC	ENSMUSG00000032591.16	novel	2262	18	NA	NA	-85	0	intron_retention	FALSE	canonical	3	16	junction_12	8.27812441015475	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGTGCTTCTTAGTTTC	6578	False	NA	18	True	CATAAA	-23	NA	107957549	107962202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
transcript_142539.nic	chr9	+	2513	16	NIC	ENSMUSG00000032591.16	novel	2262	18	NA	NA	-8	0	intron_retention	FALSE	canonical	3	16	junction_11	8.54686427228659	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGTGCTTCTTAGTTTC	6655	False	NA	18	True	CATAAA	-23	NA	107957626	107962202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107959119_107959199_107959321_107959401_107959521_107959663_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
transcript_142557.nic	chr9	+	1446	10	NIC	ENSMUSG00000070284.11	novel	1429	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	34.1655374700484	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	29	True	NA	NA	NA	107926447	107928901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_107926561_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
transcript_142558.nic	chr9	+	1660	10	NIC	ENSMUSG00000070284.11	novel	1429	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	34.1655374700484	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCAGTCCTTGTTGTTC	NA	False	NA	10	True	NA	NA	NA	107926447	107929115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_107926561_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
transcript_142559.known	chr9	+	1429	10	FSM	ENSMUSG00000070284.11	ENSMUST00000047947.9	1429	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	31.8309578326385	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	29	True	NA	NA	NA	107926523	107928901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107926620_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
transcript_142563.known	chr9	+	2702	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	12.9807549857472	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGGTAACTTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	107926440	107930000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
transcript_14257.known	chr10	+	2395	11	FSM	ENSMUSG00000006731.11	ENSMUST00000006914.11	2395	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	12.214745187682	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	354	False	NA	8	True	GGGGCT	-23	NA	127001093	127008199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
transcript_142570.known	chr9	+	1853	8	FSM	ENSMUSG00000070284.11	ENSMUST00000137284.8	1853	8	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_6	10.1196918562428	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCAGTCCTTGTTGTTC	NA	False	NA	10	True	NA	NA	NA	107926487	107929115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928442_107928524
transcript_142576.known	chr9	-	2518	22	FSM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_21	23.0064567492301	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGTGCTGGTACTT	NA	False	NA	-32	True	AATAAA	-14	NA	107971805	107962611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
transcript_142579.nnic	chr9	-	2282	21	NIC	ENSMUSG00000032590.15	novel	2518	22	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_19	42.4109360896456	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTCTGTGCTGGTACT	NA	False	NA	-33	True	AATAAA	-13	NA	107971697	107962612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107971425_107971559_107971633
transcript_142604.nic	chr9	-	1818	5	ISM	ENSMUSG00000032589.15	ENSMUST00000124763.2	7496	8	5416	2549	5416	-2549	3prime_fragment	TRUE	canonical	3	14	junction_1	4.12310562561766	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTTAATTGCAAACATGC	3719	False	NA	NA	False	AATAAA	-18	NA	107982196	107975770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_107977097_107980388_107980482_107980862_107980918_107981142_107981275_107981984
transcript_142605.nic	chr9	-	1248	5	ISM	ENSMUSG00000032589.15	ENSMUST00000124763.2	7496	8	5482	3053	5482	-3053	3prime_fragment	FALSE	canonical	3	14	junction_1	4.12310562561766	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTGTTGTTGTTGTTT	3785	False	NA	NA	False	NA	NA	NA	107982130	107976274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_107977097_107980388_107980482_107980862_107980918_107981142_107981275_107981984
transcript_14261.known	chr10	+	2212	10	FSM	ENSMUSG00000006731.11	ENSMUST00000217678.2	2212	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	17.4384278371675	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	356	False	NA	8	True	GGGGCT	-23	NA	127001095	127008199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
transcript_142621.known	chr9	-	4415	4	FSM	ENSMUSG00000039952.16	ENSMUST00000171412.7	4415	4	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	198.863995959271	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAAGATTAA	NA	False	NA	9	True	ACTAAA	-27	NA	108140935	108083156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140679
transcript_142622.known	chr9	-	4364	4	FSM	ENSMUSG00000039952.16	ENSMUST00000080435.9	4364	4	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	135.056366833342	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAAAAAATGGTGATGCT	NA	False	NA	23	True	ATTAAA	-9	NA	108141014	108083142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140823
transcript_142623.known	chr9	-	5662	4	FSM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	109.352640571684	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGAGTCTAGTGGATGGG	NA	False	NA	NA	False	NA	NA	NA	108141157	108081832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140978
transcript_142627.nic	chr9	-	4440	4	NIC	ENSMUSG00000039952.16	novel	5662	4	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	175.562587763516	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAAAAAATGGTGATGCT	NA	False	NA	23	True	ATTAAA	-9	NA	108141153	108083142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_108086861_108095211_108095610_108130207_108130357_108140978
transcript_142633.known	chr9	-	4244	3	FSM	ENSMUSG00000039952.16	ENSMUST00000166905.8	4244	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	218.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGATTAAAAA	NA	False	NA	12	True	ACTAAA	-30	NA	108141117	108083153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108086861_108095211_108095610_108140978
transcript_142636.known	chr9	+	2133	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTCAGCTGCTTGT	NA	False	NA	14	True	NA	NA	NA	108167627	108173697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
transcript_142640.known	chr9	+	2082	9	FSM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_5	15.4029218007494	525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	False	NA	21	True	AATAAA	-22	NA	108174068	108179501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
transcript_142650.known	chr9	+	2197	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	0	0	0	0	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	3539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	15	True	AATAAA	-15	NA	108183327	108215133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
transcript_142653.known	chr9	+	852	6	FSM	ENSMUSG00000007815.14	ENSMUST00000194701.6	852	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	597.472543302201	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTGAGAGAGGTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	108183995	108213933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108184276_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
transcript_14266.known	chr10	+	1497	6	FSM	ENSMUSG00000006731.11	ENSMUST00000219523.2	1497	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	9.6	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAATTTTTTTGTTTTG	507	False	NA	NA	False	ATTAAA	-24	NA	127001246	127004392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569
transcript_142666.known	chr9	-	1094	3	FSM	ENSMUSG00000039461.13	ENSMUST00000192886.6	1094	3	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_2	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTTCTTTTTGAGGA	7115	False	NA	NA	False	NA	NA	NA	108183359	108180852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108181453_108182524_108182580_108182920
transcript_142668.known	chr9	-	1668	3	FSM	ENSMUSG00000039461.13	ENSMUST00000044725.9	1668	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGTGTGGTTATTCAA	7285	False	NA	-2	True	ATTAAA	-13	NA	108183189	108180156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108181453_108182524_108182628_108182920
transcript_142669.known	chr9	+	1072	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	0	0	0	0	multi-exon	FALSE	canonical	3	8868	junction_1	0	3281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTGTGTCCTGTGTCA	NA	False	NA	18	True	AATAAA	-18	NA	108216252	108217542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108216758_108216975
transcript_142670.known	chr9	+	787	2	FSM	ENSMUSG00000063856.9	ENSMUST00000191997.2	787	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGATGGGCGCTGGTCCC	NA	False	NA	-75	True	NA	NA	NA	108216441	108217449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108216758_108216978
transcript_142671.known	chr9	+	3662	22	FSM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_19	65.884562002066	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTCCACGTTAGCTT	NA	False	NA	64	True	CATAAA	-21	NA	108225051	108269744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
transcript_142678.nnic	chr9	-	2996	9	NNC	ENSMUSG00000047220.6	novel	2890	7	NA	NA	-3387	119	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	6.97764286847643	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGGAAAGGTTATTGT	NA	False	NA	-5	True	ATTAAA	-23	NA	108309070	108280690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_108280803_108280913_108283054_108283809_108283914_108289691_108289780_108290161_108290211_108294520_108294685_108298588_108298761_108305614_108305682_108308970
transcript_142681.nnic	chr9	-	3101	8	NNC	ENSMUSG00000047220.6	novel	2890	7	NA	NA	-3387	113	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	4.97750039719553	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAATCATTGGGAAAGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	108309070	108280696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_108283054_108283809_108283914_108289691_108289780_108290161_108290211_108294520_108294685_108298588_108298761_108305614_108305682_108308970
transcript_142682.nnic	chr9	-	2988	8	NNC	ENSMUSG00000047220.6	novel	2890	7	NA	NA	-3387	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	4.97750039719553	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGTATTTGTGAATGA	NA	False	NA	NA	False	NA	NA	NA	108309070	108280809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_108283054_108283809_108283914_108289691_108289780_108290161_108290211_108294520_108294685_108298588_108298761_108305614_108305682_108308970
transcript_142689.known	chr9	+	1101	4	FSM	ENSMUSG00000032611.10	ENSMUST00000035234.6	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	2.62466929133727	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGGTTTATTACCTGGG	5955	False	NA	NA	False	AATAAA	-20	NA	108270032	108274969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108270059_108270433_108270839_108272492_108272585_108274391
transcript_14269.known	chr10	-	2218	16	FSM	ENSMUSG00000019467.16	ENSMUST00000019611.15	2218	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_14	11.8291541916102	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGAGGTTGTTGTCTT	4937	False	NA	-7	True	AATAAA	-12	NA	127025888	127018397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021042_127021155_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127025363_127025479_127025735
transcript_142693.known	chr9	-	2890	7	FSM	ENSMUSG00000047220.6	ENSMUST00000076592.4	2890	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	5.3748384988657	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGTATTTGTGAATGA	476	False	NA	NA	False	NA	NA	NA	108305683	108280809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108283054_108283809_108283914_108289691_108289780_108290161_108290211_108294520_108294685_108298588_108298761_108305614
transcript_142696.known	chr9	-	1897	6	FSM	ENSMUSG00000032609.13	ENSMUST00000035232.13	1897	6	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_5	2.71293199325011	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATAAAAATACTGCTCA	NA	False	NA	-28	True	NA	NA	NA	108329576	108324856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108325685_108326024_108326127_108326265_108326491_108326819_108326985_108328074_108328591_108329515
transcript_142698.known	chr9	+	3092	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTGGAGAGATGGCTCAG	187	False	NA	NA	False	AATAAA	-13	NA	108337725	108343137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108337817_108340136
transcript_142701.known	chr9	+	5629	33	FSM	ENSMUSG00000052911.10	ENSMUST00000065014.10	5629	33	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_6	29.6719037980376	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTTGTCTGGCCTTTG	9092	False	NA	19	True	AATAAA	-16	NA	108357055	108367729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108357174_108357256_108357343_108357476_108357650_108357736_108357873_108357954_108358029_108358432_108358622_108358702_108358767_108359006_108359210_108359299_108359421_108359706_108359896_108360079_108360260_108360369_108360483_108360728_108360809_108360886_108361020_108361209_108361369_108361444_108361573_108362385_108362513_108362696_108362890_108362965_108363110_108363313_108363546_108363620_108363785_108363862_108364088_108364174_108364393_108364491_108364589_108364674_108365048_108365145_108365331_108365403_108365646_108365724_108366074_108366365_108366574_108366651_108366794_108366975_108367153_108367244_108367405_108367482
transcript_14271.known	chr10	-	2475	15	FSM	ENSMUSG00000019467.16	ENSMUST00000218654.2	2475	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	9.18628080901302	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGAGGTTGTTGTCTTGGG	6184	False	NA	-4	True	AATAAA	-15	NA	127024641	127018394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021042_127021155_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127024119
transcript_142717.known	chr9	+	4791	27	FSM	ENSMUSG00000006676.17	ENSMUST00000006854.13	4791	27	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	78.1882873838765	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTCTCTCTGTCTAAAT	NA	False	NA	17	True	AATAAA	-19	NA	108367800	108378898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370762_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372232_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108378392
transcript_142718.known	chr9	+	4512	27	FSM	ENSMUSG00000006676.17	ENSMUST00000178075.8	4512	27	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_10	41.4654094097091	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAGTGACTGATCCACAA	NA	False	NA	11	True	AATAAA	-15	NA	108368054	108379516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372232_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
transcript_142721.known	chr9	+	4517	27	FSM	ENSMUSG00000006676.17	ENSMUST00000193678.6	4517	27	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_10	53.0108423653503	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAGTGACTGATCCACAA	NA	False	NA	11	True	AATAAA	-15	NA	108368043	108379516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372238_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
transcript_14274.nic	chr10	-	2668	14	NIC	ENSMUSG00000019467.16	novel	2475	15	NA	NA	-82	0	intron_retention	FALSE	canonical	3	18	junction_8	9.21922354866377	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGAGGTTGTTGTCTT	6102	False	NA	-7	True	AATAAA	-12	NA	127024723	127018397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127024119
transcript_14275.known	chr10	-	2571	14	FSM	ENSMUSG00000019467.16	ENSMUST00000219649.2	2571	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	12.4125342262231	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTTGTTGTCTTGGGA	4920	False	NA	-3	True	AATAAA	-16	NA	127025905	127018393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127025363_127025479_127025735
transcript_142761.known	chr9	+	2800	24	FSM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_2	39.8133167299073	1579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	18	True	AATAAA	-21	NA	108384904	108393140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
transcript_142764.nic	chr9	+	2540	23	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	-22	0	intron_retention	FALSE	canonical	3	468	junction_2	38.846487444515	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	13	True	AATAAA	-16	NA	108385232	108393135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
transcript_142810.nic	chr9	+	3538	11	NIC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	37	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	232.186649056314	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTACTGGAGAACGTGTC	903	False	NA	64	True	NA	NA	NA	108394041	108437362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_108394440_108395965_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
transcript_142814.known	chr9	+	3331	11	FSM	ENSMUSG00000006673.15	ENSMUST00000006851.15	3331	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	235.086983901704	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTACTGGAGAACGTGTC	1174	False	NA	64	True	NA	NA	NA	108394312	108437362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108394440_108395901_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
transcript_142816.nic	chr9	+	3557	11	Fusion	ENSMUSG00000006673.15_ENSMUSG00000103970.2	novel	721	3	NA	NA	-39	0	multi-exon	FALSE	canonical	3	61	junction_1	223.453440340488	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTACTGGAGAACGTGTC	1620	False	NA	64	True	NA	NA	NA	108394758	108437362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr9_+_108395176_108395965_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
transcript_142828.known	chr9	+	3040	10	FSM	ENSMUSG00000006673.15	ENSMUST00000112155.9	3040	10	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	89.886485340754	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGCGCTTTTTTTTTTTT	1170	False	NA	4	True	AGTAAA	-8	NA	108394308	108437191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
transcript_142832.nnic	chr9	+	3471	10	Fusion	ENSMUSG00000006673.15_ENSMUSG00000103970.2	novel	756	3	NA	NA	-13	0	multi-exon	FALSE	canonical	3	32	junction_1	198.101046669012	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTACTGGAGAACGTGTC	1646	False	NA	64	True	NA	NA	NA	108394784	108437362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr9_+_108395176_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
transcript_142841.known	chr9	+	2291	6	FSM	ENSMUSG00000006673.15	ENSMUST00000193258.6	2291	6	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	95.7195904713346	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAACTATCAAAA	1163	False	NA	NA	False	NA	NA	NA	108394301	108422519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061
transcript_142844.known	chr9	-	1487	5	FSM	ENSMUSG00000070283.5	ENSMUST00000074208.6	1487	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_3	47.1301389770919	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTGGATCTGTTTTCA	8143	False	NA	NA	False	NA	NA	NA	108444633	108442735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108443275_108443357_108443459_108443539_108443607_108443754_108443951_108444049
transcript_142854.known	chr9	-	4163	6	FSM	ENSMUSG00000066357.7	ENSMUST00000068700.7	4163	6	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_5	13.1969693490589	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGCCTTACCATCTCC	5751	False	NA	-1	True	AATAAA	-20	NA	108455938	108449509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108450613_108450687_108450807_108450892_108451010_108451103_108451200_108451299_108453782_108455692
transcript_142857.known	chr9	+	1746	12	FSM	ENSMUSG00000019039.15	ENSMUST00000019183.14	1746	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_8	26.2473926292634	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAGTGAGGCGTGTTC	NA	False	NA	15	True	AATAAA	-17	NA	108447084	108449973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449139_108449317_108449385_108449497_108449591_108449661_108449749
transcript_142860.nic	chr9	-	1936	10	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_5	18.6474769087329	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCCGCTTGGGGGAGGGG	NA	False	NA	2	True	AATAAA	-36	NA	108474863	108456060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108459280_108459379_108460045_108460143_108460840_108461032_108474097_108474180_108474406
transcript_142862.known	chr9	-	1841	9	FSM	ENSMUSG00000006675.11	ENSMUST00000006853.11	1841	9	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_3	12.7273082385868	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCCGCTTGGGGGAGGGG	NA	False	NA	2	True	AATAAA	-36	NA	108474866	108456060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108460045_108460143_108460840_108461032_108474097_108474180_108474406
transcript_142863.nic	chr9	-	2484	9	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	-20	0	intron_retention	FALSE	canonical	3	11	junction_4	18.9369843164111	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCCGCTTGGGGGAGGGG	NA	False	NA	2	True	AATAAA	-36	NA	108474799	108456060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_108456508_108456914_108457039_108457214_108458104_108459040_108459204_108459280_108459379_108460045_108460143_108460840_108461032_108474097_108474180_108474406
transcript_14287.known	chr10	-	3307	10	FSM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_3	43.7148447820759	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGAAGTTTTTGTTTT	NA	False	NA	-4	True	AATAAA	-23	NA	127047424	127032935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
transcript_142871.known	chr9	-	2035	4	FSM	ENSMUSG00000006675.11	ENSMUST00000195181.2	2035	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	6.94422221866655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTGAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	108474775	108458749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108460143_108460840_108461032_108474097_108474180_108474406
transcript_142874.known	chr9	-	558	4	FSM	ENSMUSG00000006675.11	ENSMUST00000192080.6	558	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	18.4571575998762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTGTCCTGTCTGTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108474545	108460189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108460336_108460840_108461032_108474097_108474180_108474406
transcript_142875.known	chr9	-	1297	3	FSM	ENSMUSG00000006675.11	ENSMUST00000193621.2	1297	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	6.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTGTCCTGTCTGTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108474779	108460189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108461032_108474097_108474180_108474406
transcript_142880.nic	chr9	-	3987	17	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	155	junction_13	228.429112363114	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108526596	108480140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521568_108522131_108522194_108526427
transcript_142886.nic	chr9	-	2264	17	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	155	junction_13	228.429112363114	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108526617	108481884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521568_108522131_108522194_108526427
transcript_142888.nnic	chr9	-	2364	17	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_16	264.803228832278	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108526598	108481884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108523130_108523296_108526427
transcript_142893.known	chr9	-	3924	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	0	0	0	0	multi-exon	TRUE	canonical	3	517	junction_5	114.47891605978	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108526579	108480140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
transcript_14290.nnic	chr10	-	3450	10	NNC	ENSMUSG00000025417.9	novel	3307	10	NA	NA	-52	-3	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	118.633682473756	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCACAGAAGTTTTTGT	NA	False	NA	-7	True	AATAAA	-20	NA	127047506	127032938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_127035014_127035117_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
transcript_142916.known	chr9	-	2160	15	FSM	ENSMUSG00000064145.13	ENSMUST00000193190.6	2160	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	244.802388026901	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108526584	108481884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521565_108522131_108522194_108526427
transcript_142921.known	chr9	+	1783	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	733	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5077	False	NA	3	True	NA	NA	NA	108539296	108561840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
transcript_142927.known	chr9	+	4965	11	FSM	ENSMUSG00000032601.14	ENSMUST00000035220.12	4965	11	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_7	36.5355990781594	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCCTGGTGTGTCTCCT	1303	False	NA	20	True	AATAAA	-20	NA	108569341	108627635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108569912_108591471_108591508_108594061_108594115_108596401_108596486_108605372_108605480_108610308_108610463_108617633_108617736_108617886_108617962_108621428_108621495_108622680_108622823_108624059
transcript_142930.nic	chr9	+	1870	7	NIC	ENSMUSG00000032599.13	novel	1846	6	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	38.4693239983352	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCTGTCGTTCTTTCT	NA	False	NA	19	True	AATACA	-23	NA	108660975	108683536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_108661070_108673262_108673596_108675308_108675378_108675469_108675693_108676440_108676617_108681740_108681917_108682737
transcript_142931.nic	chr9	+	1801	6	NIC	ENSMUSG00000032599.13	novel	1708	6	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	35.9243649909083	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCTGTCGTTCTTTCT	NA	False	NA	19	True	AATACA	-23	NA	108660975	108683536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_108661070_108673262_108673596_108675469_108675693_108676440_108676617_108681740_108681917_108682737
transcript_142937.known	chr9	+	607	4	FSM	ENSMUSG00000032599.13	ENSMUST00000192226.6	607	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	30.6847772609735	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAAGTGTCGTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	108661063	108674544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108661070_108673262_108673596_108673853_108673983_108674405
transcript_142940.known	chr9	+	1191	3	FSM	ENSMUSG00000032599.13	ENSMUST00000192307.6	1191	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	47	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGTCTTGTAGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	108660994	108675188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108661070_108673262_108673596_108674405
transcript_142942.known	chr9	+	748	3	FSM	ENSMUSG00000032599.13	ENSMUST00000194875.6	748	3	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	53	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTGGCTCACCCACCAT	NA	False	NA	8	True	AATAAA	-22	NA	108661063	108674891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108661070_108673262_108673596_108674482
transcript_142944.known	chr9	+	2820	2	FSM	ENSMUSG00000032599.13	ENSMUST00000193634.2	2820	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAAAGTGTAAATTATGT	NA	False	NA	NA	False	NA	NA	NA	108661020	108676033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108661070_108673262
transcript_142953.known	chr9	+	3360	13	FSM	ENSMUSG00000032598.9	ENSMUST00000035218.9	3360	13	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	11.5551215196264	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTAGTGTCCGGTGCTCCC	3150	False	NA	NA	False	AATAAA	-22	NA	108685566	108696043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108685854_108688244_108688355_108688747_108688953_108689077_108689169_108689417_108689909_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
transcript_142963.nic	chr9	+	2445	12	NIC	ENSMUSG00000032598.9	novel	3360	13	NA	NA	-41	-465	combination_of_known_junctions	FALSE	canonical	2	7	junction_4	23.3436419573877	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAGGCCAAAAGCCATGT	3109	False	NA	-69	True	NA	NA	NA	108685525	108695578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_108685854_108688244_108688355_108688747_108688953_108689077_108689169_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
transcript_142986.known	chr9	+	2552	21	FSM	ENSMUSG00000023259.18	ENSMUST00000188557.8	2552	21	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_1	9.81121806912883	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGTCTGTCCAACTTC	NA	False	NA	-2	True	AATACA	-12	NA	108731333	108742096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108731386_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
transcript_142989.known	chr9	+	2659	21	FSM	ENSMUSG00000023259.18	ENSMUST00000239562.1	2659	21	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	9.81121806912883	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCTGCTGTGGCATGGTC	NA	False	NA	19	True	AATAAA	-19	NA	108731895	108742117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108732034_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
transcript_143002.known	chr9	+	1653	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	0	0	0	0	multi-exon	FALSE	canonical	3	5755	junction_3	194.83802033142	8313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	18	True	AATAAA	-14	NA	108765700	108778691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
transcript_143054.known	chr9	+	1910	6	FSM	ENSMUSG00000025647.17	ENSMUST00000112059.10	1910	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	78.9186923358465	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTCTACTTCTTGAAC	NA	False	NA	71	True	NA	NA	NA	108867632	108886845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108867833_108869937_108870095_108880431_108880522_108885045_108885162_108885354_108885574_108885717
transcript_143055.known	chr9	+	1834	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	42.9678949914934	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108867652	108886792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
transcript_143058.known	chr9	+	1038	4	FSM	ENSMUSG00000025647.17	ENSMUST00000154184.5	1038	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	98.8005847935909	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTATAGAGGGCCACATG	NA	False	NA	NA	False	NA	NA	NA	108883930	108886275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108884076_108885045_108885162_108885354_108885574_108885717
transcript_143062.nic	chr9	-	4132	14	NIC	ENSMUSG00000025646.10	novel	4215	14	NA	NA	-11	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	34.9887555902104	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTGCTTGCCGCCTCT	NA	False	NA	-4	True	AATAAA	-13	NA	108903203	108887005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_108887997_108888256_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
transcript_143075.known	chr9	-	2572	13	FSM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_2	14.834971819619	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCCTGAGTCCGA	NA	False	NA	1	True	ATTAAA	-26	NA	108903192	108888814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
transcript_143077.known	chr9	-	4248	13	FSM	ENSMUSG00000025646.10	ENSMUST00000160217.8	4248	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	38.4544282957835	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGCCGCCTCTGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	108903139	108887000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894280_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
transcript_14309.known	chr10	-	1925	6	FSM	ENSMUSG00000040415.16	ENSMUST00000130855.8	1925	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	50.9643012313521	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031578	127026246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127026909_127027204_127027423_127028477_127029208_127029598_127029673_127030278_127030504_127031562
transcript_143092.known	chr9	-	2381	12	FSM	ENSMUSG00000025646.10	ENSMUST00000161521.8	2381	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	44.1986499924718	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACTGATTAAAACTGCAC	NA	False	NA	-37	True	NA	NA	NA	108903120	108888852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108888977_108889330_108889581_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
transcript_143098.nic	chr9	-	2751	8	ISM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	-11	4491	-11	3227	5prime_fragment	FALSE	canonical	3	126	junction_6	12.2407816210354	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAAGTTCCTAATTTGGG	NA	False	NA	NA	False	AAGAAA	-3	NA	108903203	108893305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
transcript_14310.nnic	chr10	-	3789	29	NNC	ENSMUSG00000074657.6	novel	6295	29	NA	NA	-60	1	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	9.36307064144743	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTTGCTTCTTATTC	NA	False	NA	1	True	AATAAA	-17	NA	127099277	127061563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_127061724_127065613_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
transcript_143101.known	chr9	-	1084	2	FSM	ENSMUSG00000049734.10	ENSMUST00000061973.5	1084	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGCCGCCTCTGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	108888802	108887000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108887997_108888714
transcript_143102.nic	chr9	-	497	2	ISM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	-11	12875	-11	-876	5prime_fragment	FALSE	canonical	3	160	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACTTAAAGAAAAGGTATG	NA	False	NA	NA	False	AATACA	-3	NA	108903203	108901689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_108901806_108902822
transcript_143104.known	chr9	-	1054	2	FSM	ENSMUSG00000049734.10	ENSMUST00000112053.2	1054	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTGCTTGCCGCCTCT	NA	False	NA	-4	True	AATAAA	-13	NA	108888319	108887005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108887997_108888256
transcript_143105.known	chr9	+	1526	4	FSM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	5.71547606649408	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGTTATATCAGACTCAG	NA	False	NA	14	True	ATTAAA	-28	NA	108911560	108921557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_108911636_108918404_108918716_108919908_108920074_108920582
transcript_143106.known	chr9	-	944	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	0	0	0	0	multi-exon	FALSE	canonical	3	4656	junction_3	487.196743284134	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGGGGTTGCCATGCTTG	NA	False	NA	NA	False	AATAAA	-21	NA	108911655	108906954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
transcript_143109.known	chr9	-	380	3	FSM	ENSMUSG00000091537.3	ENSMUST00000193868.2	380	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	2893	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACTTTTGTAAAAAAA	NA	False	NA	NA	False	AATGAA	-30	NA	108911446	108907253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_108907494_108911069_108911158_108911394
transcript_14311.known	chr10	-	6295	29	FSM	ENSMUSG00000074657.6	ENSMUST00000099172.5	6295	29	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	8.75808664222118	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTGTTGCTTCTTATT	NA	False	NA	0	True	AATAAA	-16	NA	127099217	127061564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127064291_127065613_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
transcript_143111.known	chr9	-	1614	2	FSM	ENSMUSG00000070282.7	ENSMUST00000125451.2	1614	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAACCAAAAACAAAC	NA	False	NA	NA	False	AATAAA	-14	NA	109661774	109659243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_109660498_109661414
transcript_143115.known	chr9	+	1074	7	FSM	ENSMUSG00000032478.15	ENSMUST00000035053.12	1074	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	146.935359937627	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCAAGCTTTCTCT	NA	False	NA	25	True	AATAAA	-32	NA	109661825	109672042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109661876_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_143117.nnic	chr9	+	1186	7	NNC	ENSMUSG00000032478.15	novel	719	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	215.187321497651	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCAGGCTGGCAGTACT	NA	False	NA	7	True	AATAAA	-14	NA	109661834	109672024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_109661957_109662263_109662364_109664327_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_143120.known	chr9	+	719	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCAGCTGCGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	109661816	109671597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_143127.known	chr9	+	930	6	FSM	ENSMUSG00000032478.15	ENSMUST00000198201.5	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	211.367547177896	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCAGGCTGGCAGTACT	NA	False	NA	7	True	AATAAA	-14	NA	109661854	109672024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109661876_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_143129.known	chr9	+	599	6	FSM	ENSMUSG00000032478.15	ENSMUST00000199758.5	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	239.071872038515	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGAAACAGGAGGCCAC	NA	False	NA	NA	False	NA	NA	NA	109661953	109671654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670994_109671156_109671519
transcript_14313.known	chr10	-	3996	28	FSM	ENSMUSG00000074657.6	ENSMUST00000217895.2	3996	28	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_13	6.98675996544999	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGCTGTCCATCGGTCT	NA	False	NA	-7	True	ATTAAA	-18	NA	127098949	127064918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
transcript_143131.known	chr9	+	715	6	FSM	ENSMUSG00000032478.15	ENSMUST00000200091.5	715	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	202.945707025303	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGTGTTCAGCCCTTCC	NA	False	NA	NA	False	AGTAAA	-15	NA	109661853	109671727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109661957_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_143134.known	chr9	+	762	5	FSM	ENSMUSG00000032478.15	ENSMUST00000196797.5	762	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	241.128078000054	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGTTGACTAGTCAGGA	NA	False	NA	-74	True	NA	NA	NA	109661838	109671943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109661876_109662263_109662364_109670543_109670584_109670994_109671156_109671519
transcript_143137.known	chr9	+	489	3	FSM	ENSMUSG00000032478.15	ENSMUST00000196762.5	489	3	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	169	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACACACACACGCACAC	NA	False	NA	NA	False	NA	NA	NA	109661874	109664692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109661957_109662263_109662364_109664385
transcript_14314.nic	chr10	-	2472	19	ISM	ENSMUSG00000074657.6	ENSMUST00000217895.2	3996	28	-109	7690	-94	205	5prime_fragment	FALSE	canonical	3	28	junction_4	7.19224548119211	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTGATGAGCTGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	127099058	127072608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
transcript_143142.known	chr9	+	3632	15	FSM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_8	39.8577188898467	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTGCCTAGTTCCTAA	NA	False	NA	28	True	AATAAA	-18	NA	109704646	109722963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
transcript_14315.nic	chr10	-	1279	11	ISM	ENSMUSG00000074657.6	ENSMUST00000217895.2	3996	28	-64	13694	-49	-5799	5prime_fragment	FALSE	canonical	3	28	junction_1	8.31925477431723	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTATGAGAAGGAGAAGG	NA	False	NA	NA	False	NA	NA	NA	127099013	127078612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
transcript_143152.nic	chr9	+	915	5	ISM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	-79	13961	-79	-1546	5prime_fragment	FALSE	canonical	3	464	junction_4	20.2854627751008	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAGCATAGCATCACCAT	NA	False	NA	NA	False	AATAAA	-6	NA	109704567	109709002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901
transcript_143157.known	chr9	+	6091	19	FSM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	32.471877671397	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTCTGTCCTCTTAG	NA	False	NA	25	True	AATAAA	-25	NA	109760527	109913023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
transcript_143159.known	chr9	+	5573	19	FSM	ENSMUSG00000032479.16	ENSMUST00000165876.8	5573	19	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_18	61.7868698345418	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTATGTTGCTTCTGT	NA	False	NA	17	True	AATAAA	-17	NA	109760931	109913015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910908
transcript_143168.nic	chr9	+	5128	17	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_13	70.836712541944	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTTGTATTGAAATGGC	NA	False	NA	20	True	AATAAA	-12	NA	109760498	109912238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109907070_109907153_109908848_109908962_109910488_109910679_109910802
transcript_143169.nic	chr9	+	5913	17	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_13	70.836712541944	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTCTGTCCTCTTAG	NA	False	NA	25	True	AATAAA	-25	NA	109760498	109913023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109907070_109907153_109908848_109908962_109910488_109910679_109910802
transcript_143179.nic	chr9	+	2542	9	ISM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	-29	20838	-29	-5635	5prime_fragment	FALSE	canonical	3	256	junction_1	41.9940471971921	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAGGTAGGCGCTACAGT	NA	False	NA	NA	False	AAGAAA	-1	NA	109760498	109892185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084
transcript_14318.known	chr10	+	1784	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACCAGAGTTTCAAAATA	9216	False	NA	16	True	AATAAA	-18	NA	127102255	127117819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
transcript_143181.nic	chr9	+	1502	7	ISM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	43	49202	43	6632	5prime_fragment	FALSE	canonical	3	256	junction_1	30.3063066410644	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGACAACACTTCCAATA	NA	False	NA	NA	False	AAGAAA	-37	NA	109760570	109863821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440
transcript_143182.nic	chr9	+	1640	7	ISM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	-29	49136	-29	6698	5prime_fragment	FALSE	canonical	3	256	junction_1	30.3063066410644	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAACTAGCCCCAGCCAAG	NA	False	NA	NA	False	AATAAA	-45	NA	109760498	109863887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440
transcript_143184.nic	chr9	+	930	6	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	120.044325147006	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATCTGCTTTGGCTGGCT	NA	False	NA	NA	False	NA	NA	NA	109760849	109857189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109856966
transcript_143192.known	chr9	+	5717	28	FSM	ENSMUSG00000032481.18	ENSMUST00000088716.12	5717	28	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_27	99.253261289205	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCATTCTCTGCATTCAT	2445	False	NA	24	True	AATAAA	-24	NA	109961047	110069246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944_110064122_110066886
transcript_143195.known	chr9	+	3538	27	FSM	ENSMUSG00000032481.18	ENSMUST00000197984.5	3538	27	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_24	83.6874645091864	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCATAGTTCCTGGCTGT	2502	False	NA	16	True	ATTAAA	-26	NA	109961104	110064359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944
transcript_143198.known	chr9	+	3078	25	FSM	ENSMUSG00000032481.18	ENSMUST00000200237.5	3078	25	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_24	84.427936069105	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTTGATTTTTTTTGTT	2502	False	NA	NA	False	ATTAAA	-14	NA	109961104	110042931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576
transcript_143201.nic	chr9	+	2699	24	ISM	ENSMUSG00000032481.18	ENSMUST00000200237.5	3078	25	-80	7814	-23	-104	5prime_fragment	FALSE	canonical	3	1144	junction_15	77.9669601876806	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGCGATGCCGGGAAG	2422	False	NA	NA	False	AAGAAA	-1	NA	109961024	110035117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066
transcript_143205.nic	chr9	+	2601	23	ISM	ENSMUSG00000032481.18	ENSMUST00000200237.5	3078	25	-80	9584	-23	-1874	5prime_fragment	FALSE	canonical	3	1144	junction_15	79.0118727347849	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACTGAGAAGGAACAAGATA	2422	False	NA	-6	True	GATAAA	-27	NA	109961024	110033347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279
transcript_143209.nic	chr9	+	2534	22	ISM	ENSMUSG00000032481.18	ENSMUST00000200237.5	3078	25	-80	11304	-23	-3594	5prime_fragment	FALSE	canonical	3	1144	junction_15	76.7717115323735	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCTACTCAGATATTT	2422	False	NA	NA	False	NA	NA	NA	109961024	110031627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570
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transcript_143280.known	chr9	-	3806	19	FSM	ENSMUSG00000032480.18	ENSMUST00000062368.13	3806	19	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_18	79.7176537599273	588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	-1	True	AATAAA	-21	NA	109930155	109913387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
transcript_143309.known	chr9	-	1424	2	FSM	ENSMUSG00000032480.18	ENSMUST00000196788.2	1424	2	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	109946442	109943243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_109944651_109946425
transcript_143312.known	chr9	+	3790	5	FSM	ENSMUSG00000032482.10	ENSMUST00000196060.5	3790	5	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_4	8.38152730712011	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTAGTGCCGTGGCCT	8437	False	NA	20	True	AATAAA	-21	NA	110072850	110091644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110074763_110075362_110076459_110080026_110080216_110085212_110085289_110091127
transcript_143313.known	chr9	+	3870	5	FSM	ENSMUSG00000032482.10	ENSMUST00000035058.10	3870	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	20.3531324370476	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTTAGTGCCGTGGCC	8437	False	NA	19	True	AATAAA	-20	NA	110072850	110091643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110074763_110075362_110076459_110080026_110080216_110085212_110085370_110091127
transcript_143314.known	chr9	+	1523	2	FSM	ENSMUSG00000032482.10	ENSMUST00000196176.2	1523	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGTTATTT	NA	False	NA	NA	False	NA	NA	NA	110074550	110076673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110074763_110075362
transcript_143316.known	chr9	+	2107	4	FSM	ENSMUSG00000032482.10	ENSMUST00000199736.2	2107	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	9.53356643071673	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTTAGTGCCGTGGCC	NA	False	NA	19	True	AATAAA	-20	NA	110075132	110091643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110076459_110080026_110080216_110085212_110085289_110091127
transcript_143320.known	chr9	+	1304	7	FSM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	18.4157239577729	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGGAGGTTGTCTTT	2182	False	NA	7	True	AATAAA	-17	NA	110134240	110150391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
transcript_143325.nic	chr9	+	4134	23	NIC	ENSMUSG00000032485.15	novel	619	5	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	21.4736528936053	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGGCTGAAGTTCTTGT	NA	False	NA	11	True	AATAAA	-23	NA	110162360	110214018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_110162418_110182013_110182233_110191461_110191592_110201264_110201423_110202043_110202265_110202457_110202564_110203064_110203238_110203577_110203705_110205630_110205744_110206706_110206802_110207411_110207511_110207636_110207856_110208523_110208901_110209268_110209458_110209561_110209764_110209840_110209957_110210039_110210554_110210630_110210717_110212616_110212700_110212799_110212967_110213133_110213215_110213334_110213542_110213623
transcript_143326.known	chr9	+	4227	23	FSM	ENSMUSG00000032485.15	ENSMUST00000098350.10	4227	23	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	22.4939385774762	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGGCTGAAGTTCTTGT	NA	False	NA	11	True	AATAAA	-23	NA	110162423	110214018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110162574_110182013_110182233_110191461_110191592_110201264_110201423_110202043_110202265_110202457_110202564_110203064_110203238_110203577_110203705_110205630_110205744_110206706_110206802_110207411_110207511_110207636_110207856_110208523_110208901_110209268_110209458_110209561_110209764_110209840_110209957_110210039_110210554_110210630_110210717_110212616_110212700_110212799_110212967_110213133_110213215_110213334_110213542_110213623
transcript_143331.known	chr9	-	5346	25	FSM	ENSMUSG00000036057.12	ENSMUST00000040021.12	5346	25	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_24	14.8742413438654	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTCACCTACTGCTGC	NA	False	NA	-3	True	AATAAA	-21	NA	110237281	110214149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_110214801_110214881_110214996_110215085_110215225_110215312_110215418_110215521_110215707_110215798_110217720_110217808_110217989_110218079_110218232_110218308_110218464_110218540_110218859_110219110_110219257_110219537_110219604_110219697_110219813_110219918_110219999_110220111_110220171_110220276_110220334_110220701_110220750_110220834_110220967_110221049_110221131_110221552_110221685_110221770_110221821_110222438_110222516_110222768_110222897_110227188_110227264_110237101
transcript_143346.known	chr9	-	4538	10	FSM	ENSMUSG00000054792.16	ENSMUST00000198164.5	4538	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	2.46956786343254	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCAGTTTCCTGAT	1963	False	NA	-4	True	AATAAA	-15	NA	110305757	110254995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_110258086_110259013_110259126_110261501_110261607_110265078_110265317_110266414_110266552_110267965_110268127_110275741_110275941_110279787_110279929_110284424_110284556_110305533
transcript_143350.known	chr9	+	2713	21	FSM	ENSMUSG00000032489.18	ENSMUST00000084952.8	2713	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	1.113552872566	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATCTTCCTTATGTACA	854	False	NA	NA	False	GATAAA	-26	NA	110306061	110354247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110306152_110312128_110312227_110314102_110314269_110317603_110317711_110318903_110319129_110323469_110323554_110323659_110323753_110324878_110325027_110325984_110326050_110330656_110330735_110335260_110335330_110335728_110335834_110338525_110338582_110339448_110339540_110340388_110340523_110343496_110343692_110346572_110346788_110348102_110348280_110348567_110348684_110350327_110350433_110353951
transcript_143355.nnic	chr9	+	1735	3	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3406	-15800	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	16	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATGATAAATTTAAAAATT	NA	False	NA	NA	False	TATAAA	-27	NA	110358258	110377880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_110358374_110374367_110374384_110376276
transcript_143357.nnic	chr9	+	4077	3	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3406	-13458	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	16	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGCAGCAATTCAATTAAA	NA	False	NA	NA	False	NA	NA	NA	110358258	110380222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_110358374_110374367_110374384_110376276
transcript_143358.nnic	chr9	+	4150	3	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3406	-13385	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	16	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATATAAAAGAGAGAGGGC	NA	False	NA	NA	False	NA	NA	NA	110358258	110380295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_110358374_110374367_110374384_110376276
transcript_143359.nnic	chr9	+	4416	3	NNC	ENSMUSG00000044791.17	novel	713	6	NA	NA	-3406	-13119	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	16	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGCCTGACATAGTTTT	NA	False	NA	NA	False	AAGAAA	-19	NA	110358258	110380561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_110358374_110374367_110374384_110376276
transcript_143363.nic	chr9	-	1050	5	NIC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_3	51.265851207212	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8950	False	NA	-5	True	ATTAAA	-25	NA	110453494	110450202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_110450806_110450907_110451051_110451139_110451183_110452154_110452304_110453382
transcript_143366.known	chr9	-	1223	5	FSM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_3	3.96074487943871	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8924	False	NA	-5	True	ATTAAA	-25	NA	110453520	110450202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452304_110453382
transcript_143367.nnic	chr9	-	1301	5	NNC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	51.6786948364604	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8945	False	NA	-5	True	ATTAAA	-25	NA	110453499	110450202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452403_110453382
transcript_143369.nic	chr9	-	2019	4	NIC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	8	0	intron_retention	TRUE	canonical	3	126	junction_2	1.88561808316413	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8953	False	NA	-5	True	ATTAAA	-25	NA	110453491	110450202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_110450806_110450907_110451051_110451139_110452304_110453382
transcript_143377.known	chr9	+	834	7	FSM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	22.4258035902098	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTAGTTGCTCTGGAT	8482	False	NA	29	True	AATAAA	-29	NA	110485570	110540674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
transcript_143378.known	chr9	+	451	7	FSM	ENSMUSG00000019659.9	ENSMUST00000196347.5	451	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	332.243384684581	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGCTAAAAGGCCAGGAGGA	8517	False	NA	NA	False	NA	NA	NA	110485605	110540323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110485727_110529740_110529812_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
transcript_143383.known	chr9	+	1150	1	FSM	ENSMUSG00000019659.9	ENSMUST00000198077.2	1150	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAACAAAAAAAAAAAAAAAA	8504	False	NA	NA	False	NA	NA	NA	110485592	110486742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110485600_110486700
transcript_143384.known	chr9	+	571	3	FSM	ENSMUSG00000019659.9	ENSMUST00000200550.2	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_2	18.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGTTGTTTCATTTCCT	6368	False	NA	16	True	AATAAA	-16	NA	110539078	110540661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110539230_110540153_110540231_110540318
transcript_143385.known	chr9	+	937	7	FSM	ENSMUSG00000059741.14	ENSMUST00000079784.12	937	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.10554159678513	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTATCTCTCTTTCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	110592713	110598866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110592969_110595546_110595575_110595688_110595839_110596975_110597150_110598169_110598248_110598482_110598521_110598652
transcript_143387.known	chr9	+	1456	5	FSM	ENSMUSG00000048752.8	ENSMUST00000051097.6	1456	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	2.54950975679639	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTCCTTTCTGAGCC	NA	False	NA	NA	False	ATTAAA	-16	NA	110687034	110693697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110687528_110690327_110690491_110691329_110691614_110692797_110692965_110693348
transcript_143389.known	chr9	+	5056	27	FSM	ENSMUSG00000044037.16	ENSMUST00000130386.8	5056	27	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.41374264174641	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGCATGTGTGTTCA	NA	False	NA	4	True	AATAAA	-17	NA	110709273	110729598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110709298_110711781_110711892_110713082_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
transcript_143394.known	chr9	+	5150	27	FSM	ENSMUSG00000044037.16	ENSMUST00000155014.2	5150	27	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	6.10945527743532	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTGTGTGCATGTGTGT	NA	False	NA	1	True	AATAAA	-14	NA	110709404	110729595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110709526_110711781_110711892_110713082_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
transcript_14340.known	chr10	+	2557	2	FSM	ENSMUSG00000025410.11	ENSMUST00000217692.2	2557	2	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGTAAAAAATATTCTTTA	9197	False	NA	NA	False	AATAAA	-18	NA	127102236	127105672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127102404_127103282
transcript_143402.known	chr9	+	4122	19	FSM	ENSMUSG00000044037.16	ENSMUST00000156673.2	4122	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	9.1469484893415	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTGCATGTGTGTT	7056	False	NA	2	True	AATAAA	-15	NA	110717062	110729596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110717177_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
transcript_143407.known	chr9	-	2802	6	FSM	ENSMUSG00000049555.11	ENSMUST00000050958.9	2802	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.6	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCTGACGTTCTCTCC	NA	False	NA	NA	False	AATAAA	-12	NA	110709181	110694778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_110696026_110696515_110696666_110699698_110699817_110702863_110703095_110704695_110704908_110708337
transcript_143412.known	chr9	-	1290	7	FSM	ENSMUSG00000032494.13	ENSMUST00000197460.5	1290	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	2178.41216383759	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAGAGAAGAAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	110775162	110769310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110771835_110771898_110772219_110772322_110773258_110773312_110774891
transcript_143419.known	chr9	-	1932	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	1614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	-15	True	AGTAAA	-21	NA	110775226	110768670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
transcript_143432.nnic	chr9	+	1853	9	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-668	-1818	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	94.0634759085587	44	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110782198	110811316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_110782345_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
transcript_143434.nic	chr9	+	2425	9	NIC	ENSMUSG00000032495.9	novel	666	5	NA	NA	-628	-1818	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	99.4054198723591	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110782238	110811316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_110782957_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
transcript_143445.nnic	chr9	-	2579	4	NNC	ENSMUSG00000066319.7	novel	703	3	NA	NA	97	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.23609564462324	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCATTTTCTTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	110819554	110814005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_110815454_110815781_110816383_110818512_110818732_110819243
transcript_143446.known	chr9	-	703	3	FSM	ENSMUSG00000066319.7	ENSMUST00000198702.2	703	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGGCCAAGGGGTGGGT	NA	False	NA	NA	False	NA	NA	NA	110819651	110816306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_110816383_110818512_110818732_110819243
transcript_143456.known	chr9	+	1839	15	FSM	ENSMUSG00000032497.20	ENSMUST00000196981.5	1839	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	57.6262146270679	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGGATTTTGTTTGT	NA	False	NA	46	True	AATGAA	-18	NA	110947180	111053290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111022114_111022187_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
transcript_143461.known	chr9	+	3191	14	FSM	ENSMUSG00000032497.20	ENSMUST00000098340.7	3191	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	68.9842619904487	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGCATCCTGTGGTCTG	NA	False	NA	16	True	GATAAA	-21	NA	110947202	111054736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
transcript_143478.known	chr9	-	2754	19	FSM	ENSMUSG00000032498.10	ENSMUST00000035079.10	2754	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.190277259512	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	NA	False	NA	-27	True	AATAAA	-15	NA	111100859	111057322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
transcript_14349.known	chr10	-	2962	22	FSM	ENSMUSG00000040354.15	ENSMUST00000171564.8	2962	22	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	467.860135698655	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTCTCCTGGTCTACCC	NA	False	NA	-7	True	AATAAA	-26	NA	127147655	127132090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127132310_127132409_127132503_127132585_127132610_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
transcript_143502.known	chr9	+	4245	2	FSM	ENSMUSG00000046785.9	ENSMUST00000135807.2	4245	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTTGTGTTTGTCTT	NA	False	NA	9	True	NA	NA	NA	111100996	111108157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_111103596_111106511
transcript_143503.known	chr9	+	3005	5	FSM	ENSMUSG00000032500.11	ENSMUST00000111879.5	3005	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	10.8483869768736	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	111268148	111318186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_111268421_111296545_111298384_111311685_111311819_111313984_111314153_111317592
transcript_143505.nnic	chr9	+	815	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	47899	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	3933	False	NA	NA	False	AATAAA	-20	NA	111316047	111318186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_111316269_111317592
transcript_143510.known	chr9	-	3223	18	FSM	ENSMUSG00000032504.16	ENSMUST00000111861.4	3223	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	92.4204698786755	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTGTTATGTTTTGTCA	NA	False	NA	-8	True	AATAAA	-17	NA	113537312	113483539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_113484176_113485084_113485276_113486153_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514507_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
transcript_143522.nnic	chr9	+	6531	37	NIC	ENSMUSG00000033392.17	novel	2727	16	NA	NA	-222	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_22	51.3037658353545	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGAAGACCTTAACTATG	NA	False	NA	15	True	AATAAA	-16	NA	113570318	113748750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_113570944_113590657_113590737_113595635_113595740_113599264_113599357_113600850_113600927_113602747_113602846_113615631_113615703_113642209_113642357_113664242_113664323_113670626_113670720_113673141_113673288_113676770_113676907_113677548_113677620_113679190_113679251_113680890_113680969_113681690_113681859_113682416_113682473_113683240_113683415_113691253_113691356_113697615_113697787_113699690_113699799_113705311_113705419_113707817_113707842_113709009_113709255_113710755_113710820_113719025_113719190_113721464_113721544_113725709_113725854_113728523_113728668_113730558_113730666_113732909_113733064_113735064_113735294_113737754_113737949_113738483_113738613_113740477_113740685_113744205_113744323_113747062
transcript_143525.nnic	chr9	+	4082	33	NIC	ENSMUSG00000033392.17	novel	2727	16	NA	NA	-24	-9366	combination_of_known_splicesites	FALSE	canonical	0	0	junction_22	51.4773065140116	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCCTGTATGAACTCATG	NA	False	NA	NA	False	AAGAAA	-7	NA	113570516	113737838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_113570944_113590657_113590737_113595635_113595740_113599264_113599357_113600850_113600927_113602747_113602846_113615631_113615703_113642209_113642357_113664242_113664323_113670626_113670720_113673141_113673288_113676770_113676907_113677548_113677620_113679190_113679251_113680890_113680969_113681690_113681859_113682416_113682473_113683240_113683415_113691253_113691356_113697615_113697787_113699690_113699799_113705311_113705419_113707817_113707842_113709009_113709255_113710755_113710820_113719025_113719190_113721464_113721544_113725709_113725854_113728523_113728668_113730558_113730666_113732909_113733064_113735064_113735294_113737754
transcript_143535.known	chr9	+	3850	17	FSM	ENSMUSG00000009741.16	ENSMUST00000084885.12	3850	17	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_1	91.3275141660497	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGTGTCACTCATTTCAA	1302	False	NA	20	True	AATAAA	-20	NA	113760001	113806267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_113760288_113760596_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
transcript_143538.nnic	chr9	+	3418	17	NNC	ENSMUSG00000009741.16	novel	3850	17	NA	NA	184	-2	intron_retention	FALSE	canonical	3	95	junction_1	91.3275141660497	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTATTTTGAATTCATT	1486	False	NA	15	True	AATAAA	-16	NA	113760185	113806067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_113760288_113760644_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
transcript_143539.nnic	chr9	+	3621	17	NNC	ENSMUSG00000009741.16	novel	3850	17	NA	NA	184	0	intron_retention	FALSE	canonical	3	95	junction_1	91.3275141660497	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTCACTCATTTCAAATC	1486	False	NA	23	True	AATAAA	-23	NA	113760185	113806270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_113760288_113760644_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
transcript_143541.nnic	chr9	+	3480	17	NNC	ENSMUSG00000009741.16	novel	3850	17	NA	NA	191	-2	intron_retention	FALSE	canonical	3	42	junction_1	101.01175674148	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTATTTTGAATTCATT	1493	False	NA	15	True	AATAAA	-16	NA	113760192	113806067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_113760288_113760575_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
transcript_143543.known	chr9	+	3742	16	FSM	ENSMUSG00000009741.16	ENSMUST00000009885.14	3742	16	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	93.8633522142103	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGTGTCACTCATTTCAA	1302	False	NA	20	True	AATAAA	-20	NA	113760001	113806267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_113760288_113760596_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
transcript_143546.nnic	chr9	+	3310	16	NNC	ENSMUSG00000009741.16	novel	3742	16	NA	NA	184	-2	intron_retention	FALSE	canonical	3	95	junction_1	93.8633522142103	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTATTTTGAATTCATT	1486	False	NA	15	True	AATAAA	-16	NA	113760185	113806067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_113760288_113760644_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
transcript_143547.nnic	chr9	+	3513	16	NNC	ENSMUSG00000009741.16	novel	3742	16	NA	NA	184	0	intron_retention	FALSE	canonical	3	95	junction_1	93.8633522142103	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTCACTCATTTCAAATC	1486	False	NA	23	True	AATAAA	-23	NA	113760185	113806270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_113760288_113760644_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
transcript_143550.nnic	chr9	+	3372	16	NNC	ENSMUSG00000009741.16	novel	3742	16	NA	NA	191	-2	intron_retention	FALSE	canonical	3	42	junction_1	104.062673423279	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTATTTTGAATTCATT	1493	False	NA	15	True	AATAAA	-16	NA	113760192	113806067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_113760288_113760575_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
transcript_143551.nnic	chr9	+	3575	16	NNC	ENSMUSG00000009741.16	novel	3742	16	NA	NA	191	0	intron_retention	FALSE	canonical	3	42	junction_1	104.062673423279	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTCACTCATTTCAAATC	1493	False	NA	23	True	AATAAA	-23	NA	113760192	113806270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_113760288_113760575_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
transcript_143554.known	chr9	-	2257	16	FSM	ENSMUSG00000032507.16	ENSMUST00000143180.8	2257	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	14.1254695103876	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGCATGTAGAATGGATG	NA	False	NA	-12	True	AGTAAA	-11	NA	113855794	113807104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113833104_113833263_113847056_113847119_113855760
transcript_14356.known	chr10	-	2939	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	0	0	0	0	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	1811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTCCTGGTCTACCCT	NA	False	NA	-6	True	AATAAA	-27	NA	127147655	127132089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
transcript_143563.known	chr9	-	3464	15	FSM	ENSMUSG00000032507.16	ENSMUST00000035090.14	3464	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_13	8.10139821643304	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCCATTGAAGTAGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	113855829	113805774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113855760
transcript_143564.nic	chr9	-	2203	15	NIC	ENSMUSG00000032507.16	novel	2257	16	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_14	11.0628999408853	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGCATGTAGAATGGATG	NA	False	NA	-12	True	AGTAAA	-11	NA	113875278	113807104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113875140
transcript_143572.nic	chr9	+	958	8	ISM	ENSMUSG00000009741.16	ENSMUST00000084885.12	3850	17	202	18330	202	-16514	5prime_fragment	FALSE	canonical	3	95	junction_1	109.815987089349	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAGAAGAGAACAGCTC	1504	False	NA	NA	False	AAAACA	-19	NA	113760203	113787937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_113760288_113760596_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896
transcript_143574.nnic	chr9	+	990	8	NNC	ENSMUSG00000009741.16	novel	3742	16	NA	NA	191	-16514	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	126.572073523026	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAGAAGAGAACAGCTC	1493	False	NA	NA	False	AAAACA	-19	NA	113760192	113787937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_113760288_113760575_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896
transcript_143577.known	chr9	+	4083	5	FSM	ENSMUSG00000086596.3	ENSMUST00000135338.3	4083	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.08972473588517	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATAAATGTATTGAATTTC	NA	False	NA	NA	False	AATAAA	-19	NA	113886207	113927796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_113886713_113893023_113893202_113897824_113897944_113911488_113911678_113924704
transcript_143578.known	chr9	-	1674	7	FSM	ENSMUSG00000032431.7	ENSMUST00000084881.5	1674	7	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_5	47.5280618862864	823	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTCTCCGTCCTTCCAG	NA	False	NA	NA	False	GATAAA	-20	NA	114219743	114204201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114204651_114207107_114207192_114208977_114209124_114210653_114210783_114213763_114213936_114215269_114215420_114219199
transcript_143583.known	chr9	+	1285	4	FSM	ENSMUSG00000074039.11	ENSMUST00000124664.8	1285	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	6.12825877028341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGGACATGGTGAGA	NA	False	NA	NA	False	NA	NA	NA	114197370	114206297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_114197553_114197911_114197968_114198056_114198132_114205325
transcript_143588.known	chr9	+	2660	2	FSM	ENSMUSG00000074039.11	ENSMUST00000131898.2	2660	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAAAGAACATGA	NA	False	NA	NA	False	NA	NA	NA	114197483	114200232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_114197968_114198056
transcript_143593.known	chr9	+	2396	16	FSM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	39.3725228497687	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230143	114303445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
transcript_1436.nic	chr1	+	976	6	ISM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	-54	18172	-54	0	5prime_fragment	FALSE	canonical	3	530	junction_5	70.1843287351243	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAATTCCCTTTTATTG	NA	False	NA	NA	False	AAAAAG	-15	NA	45834271	45844607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536
transcript_143602.nic	chr9	+	2236	15	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	112	junction_1	76.8975265651421	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230133	114303445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
transcript_143613.nic	chr9	+	2339	10	ISM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	32	30072	0	-30072	5prime_fragment	FALSE	canonical	3	295	junction_2	41.9046536795139	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTGCCTCTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	114230175	114273373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076
transcript_143627.known	chr9	+	2921	2	FSM	ENSMUSG00000079260.4	ENSMUST00000111820.4	2921	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAGGAAAACAAAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	114230172	114236344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_114230338_114233588
transcript_143628.nnic	chr9	+	3348	2	NNC	ENSMUSG00000079260.4	novel	2921	2	NA	NA	194	333	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATCTAGTTAGCTGAGG	NA	False	NA	NA	False	NA	NA	NA	114230366	114236677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_114230626_114233588
transcript_143630.known	chr9	-	9332	4	FSM	ENSMUSG00000079259.3	ENSMUST00000111816.3	9332	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	6.79869268479038	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTCCGTGTGATTTT	NA	False	NA	-3	True	AATAAA	-22	NA	114393437	114336200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114343165_114344800_114344936_114354021_114354190_114391372
transcript_143635.known	chr9	-	1723	10	FSM	ENSMUSG00000056167.9	ENSMUST00000216785.2	1723	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_3	40.9103204703612	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGGAATCTAAGACCTCA	NA	False	NA	NA	False	NA	NA	NA	114469252	114446595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_143636.known	chr9	-	1441	7	FSM	ENSMUSG00000056167.9	ENSMUST00000213539.2	1441	7	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	26.6817665582072	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGTGCAGTTTACTGCT	NA	False	NA	NA	False	AATAAA	-18	NA	114469153	114454335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_143640.known	chr9	+	2601	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGGGTCAAATAACGTG	2126	False	NA	3	True	AATAAA	-16	NA	114517857	114553370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
transcript_143648.known	chr9	+	1930	3	FSM	ENSMUSG00000032435.10	ENSMUST00000215345.2	1930	3	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTCATTAGAGTGTG	2126	False	NA	NA	False	AATAAA	-21	NA	114517857	114535739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_114518096_114518276_114518351_114534121
transcript_143649.known	chr9	+	3383	4	FSM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	12.8322510366134	747	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGCCTTCACAGTT	NA	False	NA	19	True	AATAAA	-15	NA	114560240	114578412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_114560442_114566250_114566428_114569126_114569226_114575506
transcript_143657.known	chr9	-	993	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	1889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCCTTATTGCATGAGA	NA	False	NA	-14	True	AATAAA	-16	NA	114610917	114585903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
transcript_143661.known	chr9	-	874	4	FSM	ENSMUSG00000032436.18	ENSMUST00000084867.9	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	609.72343457232	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTTTCCTTATTGCATG	NA	False	NA	-17	True	AATAAA	-13	NA	114610900	114585906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114586360_114587872_114587955_114592286_114592461_114610735
transcript_143666.known	chr9	-	2183	2	FSM	ENSMUSG00000032436.18	ENSMUST00000214604.2	2183	2	0	0	0	0	multi-exon	FALSE	canonical	3	1444	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	114610924	114590466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114592461_114610735
transcript_143667.known	chr9	-	665	2	FSM	ENSMUSG00000032436.18	ENSMUST00000216760.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGCTGCAGGCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	114610910	114599788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114600279_114610735
transcript_143668.known	chr9	-	1064	4	FSM	ENSMUSG00000041012.5	ENSMUST00000047013.4	1064	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACGTGTGGAGTTTGTA	NA	False	NA	NA	False	AATAAA	-13	NA	114673220	114618412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114618814_114619705_114619823_114625108_114625283_114672848
transcript_143669.nnic	chr9	-	3431	9	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	-40	-7	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	29.0376910239089	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTATAACTTGATTGTT	NA	False	NA	NA	False	NA	NA	NA	114763095	114728415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_114730448_114731440_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_143671.nnic	chr9	-	3003	9	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	-40	-435	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	29.0376910239089	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATGGAGCCTATTTTTC	NA	False	NA	-8	True	AATAAA	-19	NA	114763095	114728843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_114730448_114731440_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_143672.nnic	chr9	-	2218	9	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	-40	-123	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	29.0376910239089	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCCAAGAAGACTTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	114763095	114729628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_114730448_114731440_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_143673.known	chr9	-	4391	8	FSM	ENSMUSG00000050627.14	ENSMUST00000146623.8	4391	8	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_4	10.5540397527222	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGATTGTTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	114763055	114728408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_143677.nnic	chr9	-	2872	8	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	-40	-436	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.5958702606873	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCATGGAGCCTATTTTT	NA	False	NA	-9	True	AATAAA	-18	NA	114763095	114728844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_114730448_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_143679.known	chr9	-	1436	7	FSM	ENSMUSG00000050627.14	ENSMUST00000084853.4	1436	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	11.2989675044522	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	114762947	114732413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
transcript_143683.known	chr9	+	2477	12	FSM	ENSMUSG00000040875.13	ENSMUST00000183104.8	2477	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	15.4807264868928	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCGTTGGTATTTGTTG	NA	False	NA	6	True	ATTAAA	-16	NA	114807636	115061291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_114808033_114890900_114891077_114896313_114896394_114938467_114938660_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
transcript_143686.known	chr9	+	2158	12	FSM	ENSMUSG00000040875.13	ENSMUST00000182384.8	2158	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	20.7380354832004	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTTGGTATTTGTTGAA	NA	False	NA	8	True	ATTAAA	-18	NA	114819815	115061293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_114819891_114890900_114891077_114896313_114896394_114938467_114938660_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
transcript_143693.nnic	chr9	+	2644	8	NNC	ENSMUSG00000040875.13	novel	2477	12	NA	NA	49318	1046	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	21.4466590329	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTTGTGTCTTGTGTTA	NA	False	NA	NA	False	ATTAAA	-1	NA	114998924	115062339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_114999099_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
transcript_143695.known	chr9	-	374	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTATCCCTTGGCCAGG	7274	False	NA	NA	False	NA	NA	NA	114811807	114811433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_114811400_114811800
transcript_14371.known	chr10	-	3065	20	FSM	ENSMUSG00000040354.15	ENSMUST00000145275.8	3065	20	0	0	0	0	multi-exon	FALSE	canonical	3	1393	junction_14	176.876657025606	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	-11	True	AATAAA	-22	NA	127147547	127132094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127132310_127132409_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
transcript_143718.known	chr9	-	4221	16	FSM	ENSMUSG00000032437.11	ENSMUST00000035010.10	4221	16	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_10	54.7444974403821	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGATTTCTGATACCTTG	NA	False	NA	-34	True	AATAAA	-21	NA	115139489	115071648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_115073114_115075112_115075326_115077572_115077687_115079846_115080021_115080745_115080918_115081566_115081755_115082900_115083113_115083856_115084012_115085200_115085250_115086503_115086651_115087529_115087629_115095161_115095262_115096377_115096444_115105771_115106060_115109478_115109588_115138819
transcript_143752.known	chr9	-	472	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2763	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTGGTAGAGCAGAGTT	NA	False	NA	-63	True	NA	NA	NA	115870132	115869660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_115869700_115870100
transcript_143753.known	chr9	-	8092	8	FSM	ENSMUSG00000032440.14	ENSMUST00000061101.12	8092	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	2.1189138534559	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATTACTGGACTTATTA	NA	False	NA	NA	False	NA	NA	NA	116004333	115913360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_115919626_115922013_115922142_115934101_115934244_115938571_115939372_115958883_115959075_115960612_115960782_115987338_115987414_116004011
transcript_143754.known	chr9	-	3476	7	FSM	ENSMUSG00000032440.14	ENSMUST00000035014.8	3476	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	1.95078331845327	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGAGTTCAACCCCTCCA	NA	False	NA	NA	False	NA	NA	NA	116004428	115917996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_115919626_115922013_115922142_115934101_115934244_115938571_115939372_115958883_115959075_115960612_115960782_116004011
transcript_143761.nic	chr9	+	2142	9	NIC	ENSMUSG00000039285.13	novel	3396	8	NA	NA	16	65	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	60.328139164075	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTATTGTTTCAAGTTT	9601	False	NA	NA	False	AATAAA	-19	NA	117869582	117891622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117888687_117888735_117890781
transcript_143763.nic	chr9	+	2572	9	NIC	ENSMUSG00000039285.13	novel	3396	8	NA	NA	-23	264	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	60.328139164075	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGCTTCATGTGGAAATT	9620	False	NA	NA	False	AGTAAA	-12	NA	117869601	117892071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117888687_117888735_117890781
transcript_143764.nic	chr9	+	3215	9	NIC	ENSMUSG00000039285.13	novel	3396	8	NA	NA	-36	-264	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	60.328139164075	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATTGGATGTGAAATAC	9549	False	NA	NA	False	ATTAAA	-20	NA	117869530	117892643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117888687_117888735_117890781
transcript_143769.known	chr9	+	3396	8	FSM	ENSMUSG00000039285.13	ENSMUST00000044454.12	3396	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	57.0105611411838	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTATTTTGTGATTCA	9585	False	NA	4	True	AATATA	-18	NA	117869566	117892907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117890781
transcript_143774.known	chr9	+	2156	8	FSM	ENSMUSG00000039285.13	ENSMUST00000133580.8	2156	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	69.267302413718	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATACAATGTCCAGTTAAA	9643	False	NA	-1	True	AATAAA	-12	NA	117869624	117891807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_117869945_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117890781
transcript_143776.known	chr9	+	2499	7	FSM	ENSMUSG00000039285.13	ENSMUST00000134433.8	2499	7	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_5	18.3734409769464	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGTGTTCTTTTTAAC	9665	False	NA	NA	False	AATAAA	-17	NA	117869646	117889552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124
transcript_143782.nic	chr9	+	1316	5	ISM	ENSMUSG00000039285.13	ENSMUST00000134433.8	2499	7	-116	8758	-36	67	5prime_fragment	FALSE	canonical	3	140	junction_4	16.3783393541592	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATATTGGGTTGTGTCTT	9549	False	NA	NA	False	AATATA	-22	NA	117869530	117880794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421
transcript_143783.known	chr9	-	1169	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_1	9.03081145609604	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGGAAGGCAAGATTTAAC	NA	False	NA	NA	False	ATTAAA	-17	NA	117979245	117893589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
transcript_143785.nic	chr9	+	839	3	ISM	ENSMUSG00000039285.13	ENSMUST00000143024.2	943	4	-224	789	-36	-789	5prime_fragment	FALSE	canonical	3	157	junction_2	5.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGTAAGTTGATTTGAAA	9549	False	NA	NA	False	NA	NA	NA	117869530	117878499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_117870027_117876480_117876702_117878377
transcript_143787.nic	chr9	+	593	2	ISM	ENSMUSG00000039285.13	ENSMUST00000143024.2	943	4	-167	2654	21	-2654	5prime_fragment	FALSE	canonical	3	168	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCTGAAGGATTCAGAGA	9606	False	NA	NA	False	NA	NA	NA	117869587	117876634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_117870027_117876480
transcript_143788.known	chr9	+	3560	6	FSM	ENSMUSG00000032446.15	ENSMUST00000035020.15	3560	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	4.35430821141545	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGATTTTATTTATTTA	NA	False	NA	NA	False	AATAAA	-42	NA	118307411	118315200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_118308615_118309534_118309690_118310332_118310455_118311056_118311216_118311300_118311363_118313341
transcript_143790.known	chr9	+	1647	5	FSM	ENSMUSG00000032446.15	ENSMUST00000150633.2	1647	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1.6393596310755	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	118307928	118311825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_118308615_118309534_118309690_118310332_118310455_118311056_118311216_118311300
transcript_143799.nic	chr9	+	3200	15	ISM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	-74	25801	-74	0	5prime_fragment	FALSE	canonical	3	96	junction_12	16.3357626959118	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAATGGAAAAAATTAA	NA	False	NA	20	True	TTTAAA	-10	NA	118335260	118385786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640
transcript_143800.nic	chr9	+	3256	15	ISM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	-74	25745	-74	56	5prime_fragment	FALSE	canonical	3	96	junction_12	16.3357626959118	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGGATCAGGAAGCCA	NA	False	NA	76	True	NA	NA	NA	118335260	118385842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640
transcript_143801.known	chr9	+	2858	14	FSM	ENSMUSG00000038708.11	ENSMUST00000212097.2	2858	14	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_9	27.6373386057178	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAATGGAAAAAATTAA	NA	False	NA	20	True	TTTAAA	-10	NA	118335518	118385786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640
transcript_143806.nic	chr9	+	1629	12	ISM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	-74	33855	-74	0	5prime_fragment	FALSE	canonical	3	97	junction_9	15.190253508513	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGATGCACAGAGAAGA	NA	False	NA	NA	False	AAAAAG	-22	NA	118335260	118377732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690
transcript_143813.known	chr9	+	4461	11	FSM	ENSMUSG00000038708.11	ENSMUST00000211840.2	4461	11	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_10	60.3685348505329	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTTCATTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	118385847	118411587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118408609_118408675_118410916
transcript_143816.known	chr9	+	7583	24	FSM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_12	49.6666772391441	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTTCATTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	118335334	118411587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
transcript_143817.known	chr9	+	2309	5	FSM	ENSMUSG00000038708.11	ENSMUST00000212593.2	2309	5	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	11.6726175299288	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATGCACCATCGATCTC	NA	False	NA	NA	False	NA	NA	NA	118335338	118360895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341
transcript_143818.known	chr9	+	7020	28	FSM	ENSMUSG00000039115.14	ENSMUST00000044165.14	7020	28	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_19	2.10688335604858	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGTGTCTGACTGTG	NA	False	NA	NA	False	AATAAA	-22	NA	118435757	118730071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_118436184_118455515_118455644_118457206_118457314_118465570_118465695_118481564_118481633_118487533_118487664_118490415_118490502_118492937_118493007_118497679_118497818_118500766_118500873_118501877_118501973_118510003_118510095_118510802_118510849_118518337_118518493_118527381_118527543_118598159_118598310_118613169_118613247_118636232_118636384_118661801_118661889_118663363_118663444_118670160_118670251_118672556_118672666_118679766_118679875_118698358_118698485_118700888_118701009_118706189_118706292_118716831_118716952_118726301
transcript_143823.known	chr9	+	2909	20	FSM	ENSMUSG00000038775.15	ENSMUST00000051386.13	2909	20	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_1	8.09945109456443	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGATTTATCTTGTGAT	4707	False	NA	NA	False	NA	NA	NA	118881845	118900587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_118881897_118886850_118886923_118887072_118887148_118887378_118887585_118889412_118889522_118890544_118890656_118890962_118891163_118891509_118891589_118891673_118891773_118892315_118892452_118892669_118892771_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
transcript_143824.nic	chr9	+	2762	20	NIC	ENSMUSG00000038775.15	novel	360	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	8.42532786213614	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGTGTGGCACGTGTGCC	4794	False	NA	3	True	AATAAA	-16	NA	118881932	118900394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_118882030_118886850_118886923_118887072_118887148_118887378_118887585_118889412_118889522_118890544_118890656_118890962_118891163_118891509_118891589_118891673_118891773_118892315_118892452_118892669_118892771_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
transcript_143834.known	chr9	-	2706	15	FSM	ENSMUSG00000010660.4	ENSMUST00000214470.2	2706	15	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_4	6.31163486696415	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTAGTCTCTTTACAA	8079	False	NA	NA	False	TATAAA	-25	NA	118917329	118900594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118917135
transcript_143835.known	chr9	-	2657	15	FSM	ENSMUSG00000010660.4	ENSMUST00000010804.4	2657	15	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_14	9.15540433686184	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTAGTCTCTTTACAA	2838	False	NA	NA	False	TATAAA	-25	NA	118922570	118900594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118922425
transcript_143840.known	chr9	-	1689	12	FSM	ENSMUSG00000010651.5	ENSMUST00000010795.5	1689	12	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_6	59.9400526973023	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGTCCAGCTCTTGCT	NA	False	NA	NA	False	AGTAAA	-35	NA	118986161	118977090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_118977482_118977801_118977948_118978029_118978086_118978338_118978519_118978667_118978859_118979891_118979973_118980883_118980983_118982737_118982781_118982993_118983074_118984812_118984871_118985658_118985753_118985891
transcript_143844.known	chr9	-	2433	19	FSM	ENSMUSG00000036737.13	ENSMUST00000128880.8	2433	19	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_15	88.2525136913363	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAGAGAATTTAATTACT	5677	False	NA	-13	True	ATTAAA	-19	NA	119151388	119069735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_119070283_119070776_119070842_119071785_119071855_119073721_119073775_119074607_119074673_119076047_119076195_119080254_119080291_119083828_119083952_119088267_119088334_119089115_119089165_119093815_119093950_119096208_119096311_119097745_119097856_119101994_119102051_119113611_119113754_119119802_119119932_119123480_119123590_119133870_119133984_119151070
transcript_14385.known	chr10	+	890	4	FSM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	321.555593949165	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	False	NA	29	True	AGTAAA	-18	NA	127126642	127132157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591
transcript_143851.known	chr9	-	4647	18	FSM	ENSMUSG00000036737.13	ENSMUST00000040853.11	4647	18	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_10	22.0306486733564	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTCATTTATTTATTTA	5572	False	NA	47	True	AATAAA	-29	NA	119151493	119067497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_119070283_119070776_119070842_119071785_119071855_119073721_119073775_119074607_119074673_119076047_119076195_119080254_119080291_119083828_119083952_119088267_119088334_119089115_119089165_119093815_119093950_119096208_119096311_119097745_119097856_119101994_119102051_119113611_119113754_119123480_119123590_119133870_119133984_119151070
transcript_14387.known	chr10	+	600	3	FSM	ENSMUSG00000025408.16	ENSMUST00000139091.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	357	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGTCAGCCTGCACCAA	NA	False	NA	NA	False	NA	NA	NA	127126661	127131934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127126761_127131189_127131348_127131591
transcript_143879.nic	chr9	-	1529	9	ISM	ENSMUSG00000036737.13	ENSMUST00000040853.11	4647	18	-297	21624	-297	-17288	5prime_fragment	FALSE	canonical	3	230	junction_1	26.3459555719659	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAGGTGGGCATTCCAGC	5275	False	NA	NA	False	NA	NA	NA	119151790	119089121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_119089165_119093815_119093950_119096208_119096311_119097745_119097856_119101994_119102051_119113611_119113754_119123480_119123590_119133870_119133984_119151070
transcript_143884.known	chr9	-	1960	6	FSM	ENSMUSG00000032508.9	ENSMUST00000035092.7	1960	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	6.61513416341649	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGACTGACGGTATGTG	NA	False	NA	1	True	AATAAA	-26	NA	119169107	119164999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_119165966_119166400_119166577_119166819_119166912_119167071_119167253_119167641_119167777_119168697
transcript_143887.known	chr9	+	1762	12	FSM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_2	23.8777880116768	355	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTGTCATTTCCTTCA	7728	False	NA	28	True	AGTAAA	-19	NA	119170359	119179365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119173575_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
transcript_143889.known	chr9	+	3702	20	FSM	ENSMUSG00000035769.10	ENSMUST00000216838.2	3702	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	30.3020802335746	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCAATATTCTAACATAC	NA	False	NA	NA	False	AAGAAA	-6	NA	119186652	119222863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119186774_119188297_119188381_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119199344_119199445_119200457_119200476_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
transcript_143890.known	chr9	+	3383	19	FSM	ENSMUSG00000035769.10	ENSMUST00000039610.10	3383	19	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	12.9909750249458	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACACCTAAAATCCACCT	NA	False	NA	11	True	AATAAA	-11	NA	119186446	119222386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119186774_119188297_119188381_119190179_119190250_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
transcript_143891.known	chr9	+	3134	18	FSM	ENSMUSG00000035769.10	ENSMUST00000215822.2	3134	18	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	17.3265002945415	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCCACCTCTCCTTGCT	NA	False	NA	20	True	AATAAA	-20	NA	119186634	119222395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119186774_119188297_119188381_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
transcript_143893.known	chr9	+	3175	11	FSM	ENSMUSG00000061393.15	ENSMUST00000215746.2	3175	11	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	23.1622537763491	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAGAAAAAAAAAGTT	NA	False	NA	NA	False	AAGAAA	-4	NA	119231509	119264061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119231664_119256520_119256729_119257032_119257143_119257266_119257419_119257490_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
transcript_143895.nic	chr9	+	1987	11	NIC	ENSMUSG00000061393.15	novel	3175	11	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_3	40.556133938037	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	119231193	119262581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_119231664_119256520_119256729_119257032_119257143_119257290_119257419_119257490_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
transcript_143898.known	chr9	+	2093	10	FSM	ENSMUSG00000061393.15	ENSMUST00000165044.3	2093	10	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_3	24.155872429691	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	119231183	119262581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119231664_119256520_119256729_119257032_119257143_119257266_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
transcript_1439.known	chr1	-	3370	8	FSM	ENSMUSG00000025993.11	ENSMUST00000027137.11	3370	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.82946406783796	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTGTGCTGTAGTCAAT	NA	False	NA	NA	False	TATAAA	-31	NA	45964742	45947227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_45948880_45950051_45950691_45951395_45951642_45957468_45957596_45958044_45958161_45960315_45960476_45963876_45963945_45964380
transcript_14390.known	chr10	+	1946	16	FSM	ENSMUSG00000040345.11	ENSMUST00000219026.2	1946	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	22.9759294335035	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	8832	False	NA	10	True	ATTAAA	-16	NA	127159575	127165812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127159700_127160213_127160329_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_143902.nnic	chr9	+	2231	8	NIC	ENSMUSG00000042787.16	novel	2624	7	NA	NA	-9	-480	combination_of_known_splicesites	FALSE	canonical	3	31	junction_2	21.0092302358283	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCCTCTTCTGCTCCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	119273999	119292824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_119274217_119274352_119274388_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_143903.nnic	chr9	+	2391	8	NIC	ENSMUSG00000042787.16	novel	2624	7	NA	NA	-9	-320	combination_of_known_splicesites	FALSE	canonical	3	31	junction_2	21.0092302358283	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTACTTTCTCTCCTCA	NA	False	NA	NA	False	NA	NA	NA	119273999	119292984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_119274217_119274352_119274388_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_143904.nnic	chr9	+	2711	8	NIC	ENSMUSG00000042787.16	novel	2571	7	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_2	21.0092302358283	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACGCCTGACTGCATATT	NA	False	NA	NA	False	AAAAAG	-3	NA	119273999	119293304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_119274217_119274352_119274388_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_143905.nnic	chr9	+	3990	8	NIC	ENSMUSG00000042787.16	novel	2624	7	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_2	21.0092302358283	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGTGATTGGCCACAGTG	NA	False	NA	NA	False	NA	NA	NA	119273999	119294583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_119274217_119274352_119274388_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_143911.known	chr9	+	2571	7	FSM	ENSMUSG00000042787.16	ENSMUST00000164213.5	2571	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	23.8706002345051	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACGCCTGACTGCATATT	NA	False	NA	NA	False	AAAAAG	-3	NA	119274025	119293304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119274217_119274352_119274388_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_143916.known	chr9	+	2624	7	FSM	ENSMUSG00000042787.16	ENSMUST00000214462.2	2624	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	29.590257405662	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGCCTGACTGCATATTT	NA	False	NA	NA	False	AAAAAG	-4	NA	119274052	119293305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119274217_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_143919.known	chr9	+	3832	6	FSM	ENSMUSG00000042787.16	ENSMUST00000035094.14	3832	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	23.8109218637162	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGTGATTGGCCACAGTG	NA	False	NA	NA	False	NA	NA	NA	119274008	119294583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119274217_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_14393.nic	chr10	+	1929	15	ISM	ENSMUSG00000040345.11	ENSMUST00000219511.2	2217	16	705	-155	705	0	3prime_fragment	FALSE	canonical	3	18	junction_1	17.5692507361177	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	7794	False	NA	10	True	ATTAAA	-16	NA	127158537	127165812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_127158760_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_143930.known	chr9	+	3776	19	FSM	ENSMUSG00000032512.8	ENSMUST00000215307.2	3776	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	68.0088955692063	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTGTGCTGGACATGTT	NA	False	NA	30	True	AATAAA	-18	NA	119723971	119755653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745858_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
transcript_143933.known	chr9	+	3845	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTGCTGGACATGT	NA	False	NA	29	True	AATAAA	-17	NA	119723943	119755652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
transcript_14395.known	chr10	+	1782	15	FSM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.6447107422859	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	8881	False	NA	10	True	ATTAAA	-16	NA	127159624	127165812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127159700_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_143950.nic	chr9	+	1287	12	ISM	ENSMUSG00000032512.8	ENSMUST00000217472.2	2997	16	-53	5187	-36	-316	5prime_fragment	FALSE	canonical	3	254	junction_8	19.9946273775468	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAGAAAAGATTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	119723907	119745837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791
transcript_143954.known	chr9	-	3906	9	FSM	ENSMUSG00000032513.9	ENSMUST00000035099.9	3906	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	11.0898320546346	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAACTTGTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	119766631	119754322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_119757103_119757292_119757446_119757878_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
transcript_143958.nic	chr9	-	3018	8	NIC	ENSMUSG00000032513.9	novel	3906	9	NA	NA	-10	-1331	intron_retention	FALSE	canonical	3	103	junction_4	11.0509026318936	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGTAACTAAAGCTTT	NA	False	NA	0	True	AATAAA	-19	NA	119766641	119755653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_119757103_119757292_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
transcript_143969.known	chr9	+	2997	16	FSM	ENSMUSG00000032512.8	ENSMUST00000217472.2	2997	16	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_12	21.7864381872964	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACTTAAAAAAAAATTCTT	NA	False	NA	NA	False	NA	NA	NA	119723960	119751024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622
transcript_143974.nnic	chr9	-	2943	6	NNC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-106	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.7591821250502	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	2	True	AATAAA	-17	NA	119813830	119800228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_119800296_119800351_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813699
transcript_143976.nnic	chr9	-	3008	6	NNC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	12.9676520619579	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	2	True	AATAAA	-17	NA	119813775	119800228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813471_119813536_119813699
transcript_143978.nic	chr9	-	3474	5	NIC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	219	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	8.5	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	2	True	AATAAA	-17	NA	119813290	119800228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119812684
transcript_143979.known	chr9	-	2906	5	FSM	ENSMUSG00000032515.9	ENSMUST00000035101.9	2906	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	11.4972822875669	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	2	True	AATAAA	-17	NA	119813509	119800228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813471
transcript_143981.nic	chr9	-	2999	5	NIC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-106	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	4.71036092035419	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	2	True	AATAAA	-17	NA	119813830	119800228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813699
transcript_143983.known	chr9	-	2956	4	FSM	ENSMUSG00000032515.9	ENSMUST00000215916.2	2956	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	1.69967317119759	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGTCTTCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	119806401	119800230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067
transcript_143986.known	chr9	+	961	8	FSM	ENSMUSG00000032519.12	ENSMUST00000144768.8	961	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	67.8187861517887	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGGCTTCTTTCATGGC	1810	False	NA	NA	False	NA	NA	NA	119939489	119952717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949022_119949322_119949503_119949738_119949914_119951159_119951327_119952707
transcript_143987.nic	chr9	+	1754	8	NIC	ENSMUSG00000032519.12	novel	961	8	NA	NA	-19	-179	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	64.126469430592	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCAGGGTGGAGAC	1741	False	NA	5	True	AATAAA	-30	NA	119939420	119953391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949072_119949322_119949503_119949738_119949914_119951159_119951327_119952707
transcript_143990.nic	chr9	+	2005	7	NIC	ENSMUSG00000032519.12	novel	961	8	NA	NA	-19	-179	intron_retention	FALSE	canonical	3	13	junction_3	53.5184288093571	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCAGGGTGGAGAC	1741	False	NA	5	True	AATAAA	-30	NA	119939420	119953391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949503_119949738_119949914_119951159_119951327_119952707
transcript_143992.known	chr9	+	1791	7	FSM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	17.3173002771474	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGCACTCTGATTGACA	1760	False	NA	NA	False	ATTAAA	-16	NA	119939439	119953570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707
transcript_143996.known	chr9	+	1101	7	FSM	ENSMUSG00000032518.7	ENSMUST00000217356.2	1101	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1986.85748524313	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956854	119960625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959110_119959430_119959833_119959963_119960065_119960232_119960465
transcript_143998.known	chr9	+	1938	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	0	0	0	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	4224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCATACTCACCAGGGG	NA	False	NA	NA	False	ATTAAA	-26	NA	119956754	119961435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
transcript_144.known	SIRV5	+	1890	17	FSM	SIRV5A	SIRV501	1890	17	0	0	0	0	multi-exon	FALSE	canonical	3	1808	junction_14	3064.59256060247	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1056	10991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
transcript_144004.known	chr9	+	1599	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956909	119960625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
transcript_144010.known	chr9	+	2609	6	FSM	ENSMUSG00000032517.17	ENSMUST00000174193.8	2609	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	5.38144961882948	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCTGTTCTTCATACAT	NA	False	NA	NA	False	AGTAAA	-26	NA	119978807	120010550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_120002216_120002442_120008392_120008472_120008590
transcript_144014.known	chr9	+	1536	4	FSM	ENSMUSG00000032517.17	ENSMUST00000068698.15	1536	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	2.44948974278318	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGTGGTGACTTCCTC	NA	False	NA	NA	False	NA	NA	NA	119978772	119998444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_119997288
transcript_144015.known	chr9	+	498	3	FSM	ENSMUSG00000032517.17	ENSMUST00000215512.2	498	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTCCTGCCAGCATC	NA	False	NA	NA	False	NA	NA	NA	119978782	119997204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119978864_119983752_119983832_119996866
transcript_144016.known	chr9	+	3286	4	FSM	ENSMUSG00000032517.17	ENSMUST00000093773.8	3286	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	4.18993502999218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAATGTTTATTTGCTTT	NA	False	NA	14	True	NA	NA	NA	119978807	120005157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_120002216
transcript_144018.known	chr9	+	1035	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_2	26.9608770051883	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCAATGCACTTTGTTT	NA	False	NA	34	True	AATAAA	-36	NA	120321556	120324396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
transcript_144026.known	chr9	+	1009	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCATAGTCGAGTATAA	NA	False	NA	26	True	AATAAA	-35	NA	120400509	120403720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
transcript_14403.known	chr10	-	4057	13	FSM	ENSMUSG00000025407.8	ENSMUST00000026474.5	4057	13	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_12	8.16964231503164	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCACCTGTCATGTTGGG	2738	False	NA	NA	False	AATAAA	-17	NA	127177843	127165750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127167670_127168269_127168535_127169436_127169668_127170067_127170233_127171831_127171982_127172280_127172419_127172507_127172598_127172881_127173027_127173258_127173464_127173940_127174034_127174289_127174416_127177073_127177188_127177427
transcript_144036.known	chr9	+	713	5	FSM	ENSMUSG00000025794.10	ENSMUST00000216628.2	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	7166.45604099404	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTCTTCAGATGTACAT	NA	False	NA	NA	False	AAGAAA	-4	NA	120400621	120402883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_120400984_120401161_120401264_120401833_120401929_120402641_120402742_120402829
transcript_144039.known	chr9	+	1271	5	FSM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	0	0	0	0	multi-exon	FALSE	canonical	3	14823	junction_3	1143.83114466253	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCATGTGTGGACTCT	NA	False	NA	16	True	AATAAA	-20	NA	120400579	120403498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
transcript_14404.nic	chr10	+	1734	12	NIC	ENSMUSG00000040345.11	novel	1782	15	NA	NA	1305	0	intron_retention	FALSE	canonical	3	51	junction_1	7.05117070169648	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	False	NA	10	True	ATTAAA	-16	NA	127161496	127165812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_144041.known	chr9	-	4103	37	FSM	ENSMUSG00000040936.16	ENSMUST00000171923.8	4103	37	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_10	8.07583653886513	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATGTGTCAAACCCTCT	NA	False	NA	-1	True	AATAAA	-16	NA	121106263	120793519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_120793675_120795462_120795549_120873751_120873938_120902983_120903083_120910629_120910797_120932612_120932719_120955515_120955565_120970899_120970993_120974052_120974198_120974400_120974453_120981155_120981251_120981343_120981396_120986038_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086485_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
transcript_144044.known	chr9	+	3548	15	FSM	ENSMUSG00000006932.18	ENSMUST00000154356.8	3548	15	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_10	170.570232108749	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTGTCATTTTGTTTGT	NA	False	NA	26	True	ATTAAA	-15	NA	120762540	120789572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785043_120786175_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
transcript_144056.known	chr9	+	1292	1	FSM	ENSMUSG00000006932.18	ENSMUST00000215573.2	1292	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	27	True	ATTAAA	-16	NA	120788281	120789573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_120788300_120789600
transcript_144057.known	chr9	+	2359	10	FSM	ENSMUSG00000006932.18	ENSMUST00000154687.8	2359	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.2559711083529	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAATCAA	NA	False	NA	NA	False	NA	NA	NA	120762551	120785513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879
transcript_144059.nnic	chr9	+	5239	17	NNC	ENSMUSG00000032536.13	novel	5363	18	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_15	49.7895179103996	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTGTCTTTTTTTAGT	NA	False	NA	11	True	AATAAA	-19	NA	121126547	121303984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289581_121298050_121298154_121301302
transcript_144060.known	chr9	+	3353	17	FSM	ENSMUSG00000032536.13	ENSMUST00000238988.2	3353	17	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_15	40.0713718725726	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGGGGATTGCTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	121126577	121302065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289644_121298050_121298154_121301302
transcript_144061.nnic	chr9	+	5440	17	NIC	ENSMUSG00000032536.13	novel	5363	18	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_15	60.0020507462037	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTGTCTTTTTTTAGT	NA	False	NA	11	True	AATAAA	-19	NA	121126547	121303984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289782_121298050_121298154_121301302
transcript_144070.nnic	chr9	+	4402	16	NNC	ENSMUSG00000032536.13	novel	3353	17	NA	NA	-20	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	67.1246270422083	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTTTAGGTCCTAGTTT	NA	False	NA	6	True	ATTAAA	-16	NA	121126547	121291673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121290954_121291098
transcript_144073.known	chr9	+	4827	16	FSM	ENSMUSG00000032536.13	ENSMUST00000045903.8	4827	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	72.6943066699327	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTGTCTTTTTTTAGT	NA	False	NA	11	True	AATAAA	-19	NA	121196081	121303984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121196258_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289644_121298050_121298154_121301302
transcript_144076.nic	chr9	+	4550	15	ISM	ENSMUSG00000032536.13	ENSMUST00000238988.2	3353	17	-30	10389	-20	0	5prime_fragment	FALSE	canonical	3	209	junction_1	22.8924949826491	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTAGGTCCTAGTTTTAC	NA	False	NA	9	True	ATTAAA	-19	NA	121126547	121291676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424
transcript_144080.known	chr9	+	3533	14	FSM	ENSMUSG00000032536.13	ENSMUST00000211439.2	3533	14	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	23.6693195168457	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCGCCTTTCTTTTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	121126599	121284948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121126900_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344
transcript_144083.known	chr9	+	4043	13	FSM	ENSMUSG00000032536.13	ENSMUST00000211187.2	4043	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.7501412428026	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTAGGTCCTAGTTTTAC	NA	False	NA	9	True	ATTAAA	-19	NA	121245040	121291676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121245380_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424
transcript_144089.known	chr9	-	5713	8	FSM	ENSMUSG00000061536.14	ENSMUST00000078547.12	5713	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	8.73183245139207	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTTTGTGTGTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	121534025	121509110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121513925_121514588_121514655_121517264_121517384_121519301_121519482_121521975_121522140_121524599_121524809_121529618_121529744_121533989
transcript_144091.known	chr9	-	2669	7	FSM	ENSMUSG00000061536.14	ENSMUST00000111560.10	2669	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	6.55108133567785	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGCCTAAAACTGTATTG	NA	False	NA	NA	False	ATTAAA	-9	NA	121534095	121512099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121513925_121514588_121514655_121517264_121517384_121519301_121519482_121521975_121522140_121524599_121524809_121533989
transcript_144092.known	chr9	-	938	6	FSM	ENSMUSG00000061536.14	ENSMUST00000139193.2	938	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	7.62627038597505	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAAGGTCACAGATTCTG	NA	False	NA	NA	False	NA	NA	NA	121534045	121513616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121513925_121514588_121514655_121517264_121517384_121519301_121519482_121524599_121524809_121533989
transcript_144094.known	chr9	+	577	3	FSM	ENSMUSG00000032526.12	ENSMUST00000035113.11	577	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	21	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539394	121541987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121539538_121539704_121539782_121541630
transcript_144095.known	chr9	+	479	3	FSM	ENSMUSG00000032526.12	ENSMUST00000215833.2	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	185.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGATACACGTCCGTCCTC	NA	False	NA	-6	True	NA	NA	NA	121539437	121541970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121539538_121539704_121539782_121541668
transcript_144097.known	chr9	+	7022	17	FSM	ENSMUSG00000032525.16	ENSMUST00000035112.13	7022	17	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	11.4065496535981	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGGTCTTTCTTTGCT	NA	False	NA	9	True	AATACA	-19	NA	121548241	121585909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121548362_121548524_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121560543_121560632_121570187_121570218_121570663_121570810_121571630_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096_121579953_121580732_121580829_121581472_121581530_121582056_121582159_121583310
transcript_14410.nnic	chr10	+	1521	11	NNC	ENSMUSG00000040345.11	novel	1782	15	NA	NA	1763	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	20.5951450589696	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	False	NA	10	True	ATTAAA	-16	NA	127161954	127165812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_127162111_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_144100.nic	chr9	+	1512	15	NIC	ENSMUSG00000032525.16	novel	1460	14	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	15.8042877158093	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTAAAAAGCAGAAACATTG	NA	False	NA	NA	False	CATAAA	-7	NA	121548260	121577259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_121548362_121548524_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121559062_121559091_121560543_121560632_121567453_121567482_121570187_121570218_121570663_121570810_121571630_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096
transcript_144111.nic	chr9	+	1462	13	ISM	ENSMUSG00000032525.16	ENSMUST00000035112.13	7022	17	13	8650	8	0	5prime_fragment	FALSE	canonical	3	17	junction_5	9.7581874455363	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTAAAAAGCAGAAACATTG	NA	False	NA	NA	False	CATAAA	-7	NA	121548254	121577259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_121548362_121548524_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121560543_121560632_121570187_121570218_121570663_121570810_121571630_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096
transcript_144117.nic	chr9	+	955	11	NIC	ENSMUSG00000032525.16	novel	2576	11	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	17.7282260815909	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAGAGACGGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	121548195	121571784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_121548362_121548524_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121559062_121559091_121560543_121560632_121567453_121567482_121570187_121570218_121570663_121570810_121571630
transcript_144125.known	chr9	+	6353	6	FSM	ENSMUSG00000013419.8	ENSMUST00000093772.4	6353	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	5.5281099844341	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTGTGTGTATGTGTGAG	2067	False	NA	NA	False	NA	NA	NA	121589098	121600808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121589292_121591684_121593188_121594548_121594697_121595532_121595649_121596304_121596450_121596560
transcript_144128.known	chr9	+	2370	6	FSM	ENSMUSG00000074001.4	ENSMUST00000098272.4	2370	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.489897948556636	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCCCAGGATCTAGAATCA	6955	False	NA	NA	False	AATAAA	-17	NA	121606756	121612884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121607994_121608988_121609150_121609437_121609546_121609637_121609824_121611595_121611743_121612353
transcript_144130.known	chr9	-	2640	16	FSM	ENSMUSG00000079235.11	ENSMUST00000135986.9	2640	16	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	1.82086670449969	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAGCTCTCGTGGAGTGT	6580	False	NA	NA	False	NA	NA	NA	121668527	121626692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121627306_121628091_121628207_121629568_121629718_121637217_121637341_121638146_121638231_121639159_121639288_121642351_121642559_121643235_121643413_121645658_121645821_121648560_121648666_121649725_121649843_121654033_121654124_121656298_121656442_121659942_121660092_121662792_121663020_121668476
transcript_144131.nic	chr9	-	2642	15	ISM	ENSMUSG00000079235.11	ENSMUST00000135986.9	2640	16	5455	0	-2927	0	3prime_fragment	FALSE	canonical	1	2	junction_4	1.88034951158403	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAGCTCTCGTGGAGTGT	NA	False	NA	NA	False	NA	NA	NA	121663072	121626692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_-_121627306_121628091_121628207_121629568_121629718_121637217_121637341_121638146_121638231_121639159_121639288_121642351_121642559_121643235_121643413_121645658_121645821_121648560_121648666_121649725_121649843_121654033_121654124_121656298_121656442_121659942_121660092_121662792
transcript_144135.known	chr9	-	605	5	FSM	ENSMUSG00000038412.9	ENSMUST00000215300.2	605	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	1102.00691921603	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGGTATTGAATATTG	NA	False	NA	-25	True	AATAAA	-20	NA	121686628	121678603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121685503_121685652_121686577
transcript_144138.known	chr9	-	2232	4	FSM	ENSMUSG00000038412.9	ENSMUST00000060251.8	2232	4	0	0	0	0	multi-exon	FALSE	canonical	3	2040	junction_3	82.3825763671475	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGATGTCTTGTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	121687428	121677628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121686577
transcript_144139.known	chr9	-	1980	3	FSM	ENSMUSG00000038412.9	ENSMUST00000215007.2	1980	3	0	0	0	0	multi-exon	FALSE	canonical	3	2040	junction_2	90	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGATGTCTTGTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	121686678	121677628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121679389_121681556_121681676_121686577
transcript_144140.known	chr9	+	1530	1	FSM	ENSMUSG00000111079.2	ENSMUST00000217491.2	1530	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTGGCAGCTTTGTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	121686745	121688275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121686700_121688300
transcript_144142.known	chr9	-	463	4	FSM	ENSMUSG00000066235.8	ENSMUST00000215084.2	463	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGGTTGCGGGAGCATGC	NA	False	NA	NA	False	NA	NA	NA	121825075	121812713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121812890_121823910_121824017_121824132_121824180_121824941
transcript_144143.known	chr9	-	2413	3	FSM	ENSMUSG00000066235.8	ENSMUST00000217610.2	2413	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTTTTTCTGATGCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	121825079	121810671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121812890_121813165_121813223_121824941
transcript_144145.known	chr9	-	2365	2	FSM	ENSMUSG00000066235.8	ENSMUST00000084743.7	2365	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGTCTTTTTCTGATGC	NA	False	NA	-3	True	ATTAAA	-18	NA	121825091	121810674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121812890_121824941
transcript_144146.known	chr9	-	2504	4	FSM	ENSMUSG00000066235.8	ENSMUST00000216669.2	2504	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAAGTCTTTTTCTGAT	NA	False	NA	-5	True	ATTAAA	-16	NA	121825075	121810676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_121812890_121823910_121824017_121824132_121824184_121824941
transcript_144147.nic	chr9	+	3459	9	NIC	ENSMUSG00000038145.18	novel	1664	9	NA	NA	-5	597	intron_retention	FALSE	canonical	1	1	junction_3	11.9209636774885	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTCTGTGTAAGTTTCC	8214	False	NA	NA	False	NA	NA	NA	121946326	121997138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_121946474_121960958_121961009_121961693_121961817_121963026_121963143_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
transcript_144148.known	chr9	+	1664	9	FSM	ENSMUSG00000038145.18	ENSMUST00000134949.8	1664	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	11.6833214455479	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGATGAGCTCCCGGA	8300	False	NA	NA	False	NA	NA	NA	121946412	121995455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121946474_121960958_121961009_121961693_121961817_121963052_121963143_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
transcript_144151.nic	chr9	+	3343	8	NIC	ENSMUSG00000038145.18	novel	1664	9	NA	NA	-5	597	intron_retention	FALSE	canonical	3	20	junction_3	6.34388666033558	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTCTGTGTAAGTTTCC	8214	False	NA	NA	False	NA	NA	NA	121946326	121997138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_+_121946474_121960958_121961009_121961693_121961817_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
transcript_144154.known	chr9	+	4811	7	FSM	ENSMUSG00000038145.18	ENSMUST00000118886.9	4811	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	9.08142181721685	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGTCTGTGTTCCTTTT	8253	False	NA	NA	False	AATAAA	-28	NA	121946365	121998768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121946474_121960958_121961009_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
transcript_144156.known	chr9	+	4758	6	FSM	ENSMUSG00000038145.18	ENSMUST00000120173.9	4758	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	10.6695829346793	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGTCTGTGTTCCTTTT	8256	False	NA	NA	False	AATAAA	-28	NA	121946368	121998768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_121946474_121965971_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
transcript_144158.known	chr9	-	2653	13	FSM	ENSMUSG00000037949.9	ENSMUST00000042546.4	2653	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.44797556515911	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCAAATGTTTCAAGCTG	NA	False	NA	3	True	ATTAAA	-37	NA	122123489	122004939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_122005545_122030836_122030954_122080212_122080342_122082001_122082194_122086121_122086305_122087982_122088058_122088600_122088657_122090149_122090720_122092735_122092856_122100264_122100400_122101432_122101631_122104576_122104730_122123369
transcript_144162.known	chr9	+	3157	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180672	122210589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
transcript_144167.known	chr9	+	2576	5	FSM	ENSMUSG00000032540.17	ENSMUST00000111497.5	2576	5	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	33.7073804974519	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180794	122210589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122180905_122204970_122205126_122206923_122207036_122207886_122208074_122208577
transcript_144169.known	chr9	+	3049	11	FSM	ENSMUSG00000046603.17	ENSMUST00000052740.14	3049	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	5.03984126734166	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCGTTCCAGGATTTCCA	NA	False	NA	22	True	AATAAA	-22	NA	122634603	122665399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647838_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
transcript_14417.known	chr10	-	5319	2	FSM	ENSMUSG00000047492.6	ENSMUST00000059718.6	5319	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCTGTGTGTTCTTT	5446	False	NA	NA	False	NA	NA	NA	127190280	127184725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127186881_127187116
transcript_144172.known	chr9	+	2909	11	FSM	ENSMUSG00000046603.17	ENSMUST00000136274.3	2909	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	5.03984126734166	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACACAGCTGCGTTCCAGG	NA	False	NA	15	True	AATAAA	-15	NA	122634660	122665392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647914_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
transcript_144183.known	chr9	+	1580	1	FSM	ENSMUSG00000046603.17	ENSMUST00000213178.2	1580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	122634667	122636247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122634700_122636200
transcript_144189.known	chr9	-	6189	7	FSM	ENSMUSG00000047036.9	ENSMUST00000216063.2	6189	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	50.4669859082813	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAATTATACAGAAGTTC	NA	False	NA	6	True	AATAAA	-35	NA	122695071	122677974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691325_122694978
transcript_144190.nic	chr9	-	4162	7	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	-10	903	combination_of_known_junctions	FALSE	canonical	3	67	junction_3	36.0262250157977	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGGATAAATAAACAAGACA	NA	False	NA	NA	False	NA	NA	NA	122695060	122680075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691410_122694978
transcript_144198.known	chr9	+	2010	4	FSM	ENSMUSG00000057895.12	ENSMUST00000051667.14	2010	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	7.71722460186015	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTTGTTTTAACTGTAT	4874	False	NA	11	True	AATAAA	-22	NA	122752136	122760093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122752284_122754072_122754362_122755374_122755520_122758664
transcript_1442.nnic	chr1	-	5137	11	NNC	ENSMUSG00000025986.7	novel	5498	10	NA	NA	495	0	at_least_one_novel_splicesite	TRUE	canonical	3	13	junction_10	105.535823301853	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGTGTTTTCATTGTC	423	False	NA	NA	False	AATAAA	-16	NA	46892711	46846703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46880907_46881042_46892630
transcript_144201.known	chr9	-	3361	3	FSM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	10	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	122780065	122774153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_122777174_122777989_122778135_122779869
transcript_144205.known	chr9	+	4858	35	FSM	ENSMUSG00000036768.7	ENSMUST00000040717.7	4858	35	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_12	27.7337969778696	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTATAAATACTATGCCT	NA	False	NA	8	True	AATAAA	-18	NA	122780110	122847798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506_122815717_122816910_122817089_122820150_122820293_122820925_122821068_122822907_122823106_122824780_122824889_122825355_122825462_122826846_122827013_122828239_122828391_122828579_122828666_122830109_122830180_122831099_122831187_122832634_122832740_122833635_122833759_122836378_122836526_122838381_122838484_122838824_122838990_122840592_122840703_122843004_122843078_122843533_122843572_122846309_122846476_122846651_122846784_122847132
transcript_14423.nic	chr10	+	4182	25	NIC	ENSMUSG00000025404.16	novel	4281	27	NA	NA	-50	0	combination_of_known_junctions	TRUE	canonical	3	158	junction_11	25.3408705892718	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCACTGGCCATCAGTC	NA	False	NA	4	True	TATAAA	-20	NA	127216480	127335236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_127216806_127226179_127226297_127235994_127236063_127280144_127280345_127287860_127287903_127288560_127288648_127290498_127290626_127293518_127293598_127294007_127294068_127294678_127294820_127295335_127295445_127298056_127298153_127300850_127300883_127307636_127307870_127312388_127312568_127319844_127320088_127320374_127320502_127320730_127320892_127321284_127321440_127323643_127323745_127328437_127328608_127330889_127331038_127333030_127333129_127333409_127333495_127334237
transcript_144230.known	chr9	+	1057	6	FSM	ENSMUSG00000036768.7	ENSMUST00000215176.2	1057	6	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_5	25.0391693152948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTTAAAAAAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	122780159	122801410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753
transcript_144234.known	chr9	+	882	1	FSM	ENSMUSG00000036768.7	ENSMUST00000216730.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AAAAAG	-39	NA	122780146	122781028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122780100_122781000
transcript_144241.known	chr9	-	2492	8	FSM	ENSMUSG00000025786.18	ENSMUST00000026892.15	2492	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	109.785505158273	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCTCTGCTCTCTCCC	8738	False	NA	-1	True	AATAAA	-16	NA	122942245	122905896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122927987_122928040_122929327_122929658_122942060
transcript_144247.known	chr9	-	5376	7	FSM	ENSMUSG00000025786.18	ENSMUST00000238520.2	5376	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	93.3196418529109	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGCCAGAATCTGTTCT	8771	False	NA	NA	False	NA	NA	NA	122942212	122895224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_122899684_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
transcript_144252.known	chr9	-	6987	7	FSM	ENSMUSG00000025786.18	ENSMUST00000147563.9	6987	7	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	22.8454955443445	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATACAAATCATTTAAGTG	8713	False	NA	NA	False	NA	NA	NA	122942270	122901374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
transcript_144258.known	chr9	-	1633	6	FSM	ENSMUSG00000025786.18	ENSMUST00000155778.8	1633	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	109.405667129267	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCTTATACAATCACAAGA	8752	False	NA	NA	False	NA	NA	NA	122942231	122906564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122929327_122929658_122942060
transcript_144261.known	chr9	+	1041	3	FSM	ENSMUSG00000066233.7	ENSMUST00000084733.7	1041	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATATGGAATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	122850390	122852552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122850636_122851230_122851378_122851903
transcript_144263.known	chr9	-	2127	4	FSM	ENSMUSG00000025786.18	ENSMUST00000129151.2	2127	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	14.613540144522	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAATAATAAGC	8714	False	NA	NA	False	TTTAAA	-36	NA	122942269	122911912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_122913376_122918096_122918222_122929327_122929658_122942060
transcript_144267.known	chr9	+	1053	8	FSM	ENSMUSG00000025785.6	ENSMUST00000026891.5	1053	8	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_3	103.377058995362	1212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTGTTAGCATCTCC	NA	False	NA	15	True	AATAAA	-20	NA	122942279	122965194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_122942388_122947955_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
transcript_144273.known	chr9	-	5310	9	FSM	ENSMUSG00000035498.11	ENSMUST00000039229.8	5310	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.31695671910659	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTTCATTTGTTTAAT	6331	False	NA	NA	False	AATAAA	-18	NA	123045103	122999888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_123002992_123004799_123004885_123006752_123007119_123009049_123009431_123011229_123011452_123012521_123012891_123014117_123014481_123018985_123019196_123044892
transcript_144275.known	chr9	-	1712	1	FSM	ENSMUSG00000054871.6	ENSMUST00000068140.6	1712	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGTTTCCTTTATTT	NA	False	NA	3	True	AATACA	-19	NA	123089829	123088117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_123088100_123089800
transcript_144276.known	chr9	-	1370	1	FSM	ENSMUSG00000058492.6	ENSMUST00000216438.2	1370	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	123137034	123135664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_123135700_123137000
transcript_144278.nnic	chr9	+	3419	22	NNC	ENSMUSG00000035202.9	novel	3894	21	NA	NA	-46	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	12.0892373565889	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTCTACCCAGTCCTTC	NA	False	NA	8	True	AATAAA	-13	NA	123195945	123291728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015_123224077_123238678_123238769_123240937_123241082_123247243_123247352_123247699_123247860_123256511_123256617_123260950_123261067_123265181_123265466_123267199_123267299_123270528_123270667_123281809_123281911_123282275_123282459_123283774_123283945_123284024_123284103_123284957_123285070_123288556_123288685_123290563_123290733_123291252
transcript_144282.nic	chr9	+	2061	14	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	9	20949	6	-19878	5prime_fragment	FALSE	canonical	3	28	junction_9	7.36776924642996	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTTTAGAGGCCATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	123196000	123270780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015_123224077_123238678_123238769_123240937_123241082_123247243_123247352_123247699_123247860_123256511_123256617_123260950_123261067_123265181_123265466_123267199_123267299_123270528
transcript_144285.nic	chr9	+	1065	5	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	-46	67346	-46	0	5prime_fragment	FALSE	canonical	3	41	junction_4	7.58287544405155	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCCTTTAGGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	123195945	123224383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015
transcript_144286.known	chr9	+	4848	8	FSM	ENSMUSG00000025239.4	ENSMUST00000026269.4	4848	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	3.69776545872708	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCAAGACTGTCTTCTTT	NA	False	NA	7	True	AATAAA	-23	NA	123307770	123350617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_123309687_123329195_123329298_123339572_123339641_123340280_123340344_123345839_123345971_123346427_123346480_123347160_123347230_123348170
transcript_144290.known	chr9	+	2986	5	FSM	ENSMUSG00000025239.4	ENSMUST00000216352.2	2986	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	2.58602010819715	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAAAATGTCCCCC	NA	False	NA	NA	False	NA	NA	NA	123307808	123346714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_123309687_123329195_123329298_123339572_123339641_123340280_123340344_123345839
transcript_144291.known	chr9	+	3433	20	FSM	ENSMUSG00000025240.11	ENSMUST00000238984.2	3433	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_14	24.7475900502736	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCGCTGTTGGTACTGTTT	NA	False	NA	17	True	AATAAA	-18	NA	123358946	123421663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389665_123395455_123395558_123397988_123398075_123399013_123399101_123399561_123399631_123406041_123406122_123408013_123408113_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415503_123415626_123415720_123416609_123416668_123419865
transcript_144293.known	chr9	-	2732	11	FSM	ENSMUSG00000036814.14	ENSMUST00000040960.13	2732	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.830662386291808	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGAGAGTTCTTCCTGT	NA	False	NA	NA	False	AATAAA	-19	NA	123507950	123465186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_123466211_123466857_123467024_123469632_123469793_123470774_123470980_123484067_123484231_123485285_123485528_123486466_123486578_123489459_123489688_123492013_123492106_123493617_123493759_123507750
transcript_144295.known	chr9	-	4070	10	FSM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	8.45905169363301	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAAGGAAGGAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	123546690	123526076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364_123544490_123546590
transcript_144300.known	chr9	-	6541	9	FSM	ENSMUSG00000025245.15	ENSMUST00000165754.8	6541	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_8	33.4168744798193	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCATACACAAAATCAATATT	NA	False	NA	NA	False	AATAAA	-13	NA	123546690	123523480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123546590
transcript_144306.known	chr9	-	7692	18	FSM	ENSMUSG00000025241.17	ENSMUST00000167595.9	7692	18	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	6.23584903191129	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGAGTAGCATTGTCTT	9310	False	NA	-7	True	AATAAA	-15	NA	123680964	123618574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_123621815_123623789_123623900_123626581_123626793_123630286_123630383_123648111_123648257_123651382_123651595_123652242_123652393_123654570_123654739_123655610_123655730_123656149_123656243_123657240_123659545_123660351_123660443_123662162_123662307_123663857_123663965_123667936_123668063_123669606_123669714_123672523_123672674_123680845
transcript_144307.known	chr9	-	2623	4	FSM	ENSMUSG00000074829.11	ENSMUST00000177714.8	2623	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	8.73053390247253	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACTATTATCATGTTTTG	NA	False	NA	NA	False	AATAAA	-23	NA	124075326	124054433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124075189
transcript_144308.known	chr9	-	795	5	FSM	ENSMUSG00000074829.11	ENSMUST00000071300.13	795	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	8.95823643358446	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAATGTGGTAAAGCCTTT	NA	False	NA	NA	False	NA	NA	NA	124075272	124056270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124067285_124067349_124075189
transcript_144315.nnic	chr9	+	2371	13	NNC	ENSMUSG00000093803.6	novel	4016	11	NA	NA	-592	1094	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	71.3225751233242	169	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCCTGGGGTGCACAGTC	NA	False	NA	17	True	AATAAA	-18	NA	124195234	124202490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr9_+_124196070_124197152_124197355_124197648_124197753_124197928_124198032_124198703_124198779_124199151_124199239_124199674_124199836_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201402_124201794_124201908_124202239
transcript_144335.known	chrM	+	955	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTGTAGCTTAATATTA	-3	True	NA	-47	True	NA	NA	NA	69	1024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_100_1000
transcript_144336.known	chrM	+	1582	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	686	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGGGTGGCAGAGCCAGG	-3	True	NA	34	True	AATAAA	-35	NA	1093	2675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_1100_2700
transcript_144337.known	chrM	+	957	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1365	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATGTCTGATAAAAGAA	-2	True	NA	-17	True	NA	NA	NA	2750	3707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_2800_3700
transcript_144338.known	chrM	+	1038	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	242	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTAGGATATACTAGTC	-3	True	NA	-27	True	NA	NA	NA	3913	4951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_3900_5000
transcript_144339.known	chrM	+	1545	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGGAAGGAATCGAACCC	1	True	NA	NA	False	AGTAAA	-5	NA	5327	6872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_5300_6900
transcript_144340.known	chrM	+	684	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1953	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCACTATGAAGCTAAGAG	-1	True	NA	NA	False	ACTAAA	-35	NA	7012	7696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_7000_7700
transcript_144341.known	chrM	+	681	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	150	False	NA	NA	False	AATACA	-4	NA	7926	8607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_7900_8600
transcript_144342.known	chrM	+	784	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4282	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCTTAGTATAATTAAT	-2	True	NA	NA	False	NA	NA	NA	8606	9390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_8600_9400
transcript_144343.known	chrM	+	204	1	FSM	ENSMUSG00000064356.1	ENSMUST00000082407.1	204	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGATTCCCAATCGTTGTA	-11	True	NA	NA	False	ATTAAA	-44	NA	7765	7969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_7800_8000
transcript_144344.known	chrM	+	348	1	FSM	ENSMUSG00000064360.1	ENSMUST00000082411.1	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGTAATTAGTTTAAAAAA	-2	True	NA	NA	False	AAAAAG	-21	NA	9458	9806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_9500_9800
transcript_144345.known	chrM	+	1378	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	225	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	69	False	NA	13	True	NA	NA	NA	10166	11544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_10200_11500
transcript_144346.known	chrM	+	297	1	FSM	ENSMUSG00000065947.1	ENSMUST00000084013.1	297	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTCTTCCCTCACTA	-1	True	NA	NA	False	NA	NA	NA	9876	10173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_9900_10200
transcript_144347.known	chrM	+	1824	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTCGATAATAATAAAAATA	-4	True	NA	-12	True	NA	NA	NA	11741	13565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_11700_13600
transcript_144348.known	chrM	-	519	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAGTATAAGATAATAATT	-3	True	NA	NA	False	NA	NA	NA	14070	13551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_-_13600_14100
transcript_144349.known	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1463	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	12	True	ACTAAA	-12	NA	14144	15288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrM_+_14100_15300
transcript_144350.known	chrX	+	3036	2	FSM	ENSMUSG00000073295.5	ENSMUST00000103007.4	3036	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCAATAAGATCCTGAA	NA	False	NA	NA	False	AATAAA	-14	NA	5959506	5967164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_5960459_5965080
transcript_144351.known	chrX	-	1838	2	FSM	ENSMUSG00000073294.5	ENSMUST00000101698.4	1838	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTTGTTGTGGTACAA	NA	False	NA	1	True	AATAAA	-24	NA	5995473	5993272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_5994830_5995192
transcript_144352.known	chrX	-	2201	1	FSM	ENSMUSG00000073294.5	ENSMUST00000117544.2	2201	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTTGTTGTGGTACAA	NA	False	NA	1	True	AATAAA	-24	NA	5995473	5993272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_5993300_5995500
transcript_144353.known	chrX	-	1775	2	FSM	ENSMUSG00000073293.5	ENSMUST00000103006.4	1775	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGAGTCCTTATAATTA	NA	False	NA	8	True	NA	NA	NA	6085069	6080749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_6081851_6084395
transcript_144354.known	chrX	+	8201	8	FSM	ENSMUSG00000068270.16	ENSMUST00000089520.3	8201	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	3.98978286964827	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGACTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-14	NA	6489339	6549502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_6489651_6492882_6493018_6495245_6497710_6503009_6503072_6535713_6536491_6541154_6541336_6544276_6544547_6545501
transcript_144357.known	chrX	-	8390	12	FSM	ENSMUSG00000004317.15	ENSMUST00000004428.14	8390	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_11	7.74596669241483	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGTCTGTTTCTGAAGA	NA	False	NA	0	True	AATAAA	-22	NA	7054953	7020048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7054770
transcript_144359.known	chrX	-	3240	1	FSM	ENSMUSG00000046269.18	ENSMUST00000115744.2	3240	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAATTTTATTTGGACTG	NA	False	NA	NA	False	NA	NA	NA	7242069	7238829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7238800_7242100
transcript_144360.known	chrX	-	885	4	FSM	ENSMUSG00000063018.7	ENSMUST00000150671.2	885	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	23.5372045918796	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTACTTTGTGGCTTAT	7929	False	NA	-31	True	NA	NA	NA	7311382	7278344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7278772_7290368_7290524_7295745_7295914_7311247
transcript_144361.known	chrX	-	540	2	FSM	ENSMUSG00000063018.7	ENSMUST00000128571.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	-28	True	NA	NA	NA	7289227	7278341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7278772_7289117
transcript_144368.known	chrX	-	2353	17	FSM	ENSMUSG00000031143.5	ENSMUST00000033483.5	2353	17	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_12	25.3807721267498	554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGCTTAGGCATGGATT	NA	False	NA	-9	True	AATAAA	-19	NA	7471756	7460047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
transcript_144379.known	chrX	-	3066	4	FSM	ENSMUSG00000039556.17	ENSMUST00000115742.9	3066	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTCTGGGAGCCTGT	NA	False	NA	NA	False	AATATA	-21	NA	7440487	7425190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7427123_7430100_7430181_7430474_7430528_7439486
transcript_144384.known	chrX	+	2301	9	FSM	ENSMUSG00000031145.16	ENSMUST00000033485.14	2301	9	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	5.54526825320471	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTGTTTATTTAGCC	NA	False	NA	97	True	AAAAAG	-31	NA	7523498	7534197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7523740_7524859_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
transcript_144394.known	chrX	-	1157	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	1816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537629	7534179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
transcript_144396.known	chrX	-	1212	4	FSM	ENSMUSG00000031146.7	ENSMUST00000136155.2	1212	4	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_3	118.4229707447	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGTTTAAGTCTATAAT	NA	False	NA	NA	False	AATAAA	-9	NA	7537611	7534198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535998_7537381
transcript_144397.known	chrX	+	1708	3	FSM	ENSMUSG00000031145.16	ENSMUST00000141876.2	1708	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACAAAAGCGGAG	NA	False	NA	NA	False	NA	NA	NA	7523710	7527367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7523740_7524859_7524946_7525774
transcript_144399.known	chrX	-	600	2	FSM	ENSMUSG00000031146.7	ENSMUST00000143854.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAGAGGCAAAGGCAG	NA	False	NA	NA	False	AAAACA	-23	NA	7537552	7535568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7535998_7537381
transcript_1444.known	chr1	-	5498	10	FSM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_4	21.0736509753792	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGTGTTTTCATTGTC	NA	False	NA	NA	False	AATAAA	-16	NA	46893206	46846703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46892630
transcript_144400.known	chrX	+	3579	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCGCATTTGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	7563369	7576501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
transcript_144412.known	chrX	+	1568	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115689.10	1568	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	58.911883351324	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGGTGGGGCGTGCTT	4038	False	NA	17	True	AATAAA	-30	NA	7588487	7594440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7588618_7590091_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
transcript_144416.known	chrX	+	1510	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115688.8	1510	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	67.1240642392875	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCATTTATGACTTGACC	4039	False	NA	-2	True	AATAAA	-11	NA	7588488	7594421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593450_7593511_7593585_7593732_7593988
transcript_14443.known	chr10	-	2289	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	0	0	0	0	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTATTTTGCCCACGG	NA	False	NA	-21	True	NA	NA	NA	127358313	127353007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
transcript_144430.known	chrX	+	1339	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_2	75.5	470	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1170	False	NA	7	True	AATAAA	-20	NA	7594677	7597303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7595002_7595954_7596173_7596506
transcript_144433.nic	chrX	-	3850	10	NIC	ENSMUSG00000031150.14	novel	3658	10	NA	NA	-14	0	intron_retention	TRUE	canonical	3	16	junction_9	8.46926177784867	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATTGAGTCTCTGTCTG	NA	False	NA	-4	True	AATAAA	-14	NA	7617158	7597952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400_7604492_7604608_7604763_7616836
transcript_144439.nnic	chrX	+	3148	11	NNC	ENSMUSG00000000134.18	novel	3277	10	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	92.8918188001505	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628763	7641438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_7628870_7629128_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_144441.nic	chrX	+	3008	10	NIC	ENSMUSG00000000134.18	novel	6328	7	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	90.0647229551485	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628732	7641438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_7628870_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_144444.known	chrX	+	3239	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115679.8	3239	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	88.3978101510788	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7628914	7641440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7629300_7631745_7631860_7632812_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_144447.known	chrX	+	3103	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115680.11	3103	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	97.3049172117229	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTCCCGTTCTTGTT	NA	False	NA	25	True	AATAAA	-36	NA	7629005	7641441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7629300_7631745_7631860_7632858_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_144450.known	chrX	+	2943	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115677.8	2943	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	93.7669820010234	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7630197	7641440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7630268_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_144453.known	chrX	+	2989	10	FSM	ENSMUSG00000000134.18	ENSMUST00000101695.9	2989	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	96.5471803041982	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATTGAGTCTCCCGTTC	NA	False	NA	20	True	AATAAA	-31	NA	7630279	7641436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7630400_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_144464.known	chrX	+	3163	9	FSM	ENSMUSG00000000134.18	ENSMUST00000079542.13	3163	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	94.1407689314252	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628902	7641438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_144474.known	chrX	+	4717	8	FSM	ENSMUSG00000000134.18	ENSMUST00000143680.8	4717	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	33.9975989548362	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7628935	7641440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7629300_7631745_7631860_7632793_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687
transcript_144488.known	chrX	+	3390	10	FSM	ENSMUSG00000000134.18	ENSMUST00000137467.8	3390	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	95.6201332175563	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628933	7641438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7629453_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_144490.known	chrX	+	3015	26	FSM	ENSMUSG00000031153.17	ENSMUST00000115675.9	3015	26	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_12	17.6906755099968	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3260	False	NA	7	True	NA	NA	NA	7656233	7686802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7669832_7669926_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
transcript_144493.known	chrX	+	3156	25	FSM	ENSMUSG00000031153.17	ENSMUST00000065932.14	3156	25	0	0	0	0	multi-exon	FALSE	canonical	2	42	junction_24	10.7256669049321	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGTCTCATTCTTTTC	3030	False	NA	11	True	NA	NA	NA	7656003	7686806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
transcript_144494.nic	chrX	+	3730	24	NIC	ENSMUSG00000031153.17	novel	3015	26	NA	NA	-30	0	intron_retention	FALSE	canonical	2	42	junction_23	10.5842555254659	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3229	False	NA	7	True	NA	NA	NA	7656202	7686802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7685561_7686240
transcript_144497.known	chrX	+	2867	24	FSM	ENSMUSG00000031153.17	ENSMUST00000101694.10	2867	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	21.1150418078725	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3273	False	NA	7	True	NA	NA	NA	7656246	7686802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7669832_7669926_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
transcript_144509.nnic	chrX	+	3465	7	NNC	ENSMUSG00000009731.5	novel	5287	6	NA	NA	-121	-585	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	7.80313327381308	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCTACTGACTCTGTGGA	NA	False	NA	NA	False	AATAAA	-26	NA	7688406	7703934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_7688630_7689987_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331_7698583_7702504
transcript_144518.known	chrX	+	2543	10	FSM	ENSMUSG00000031154.16	ENSMUST00000115668.10	2543	10	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	125.359138399428	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTCTATTCTGTGTGGG	NA	False	NA	10	True	AATAAA	-22	NA	7708320	7741529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7708708_7708836_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
transcript_144536.known	chrX	+	2708	9	FSM	ENSMUSG00000031154.16	ENSMUST00000115667.10	2708	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	155.078558721056	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGCAACTCTATTCTGT	NA	False	NA	5	True	AATAAA	-17	NA	7708294	7741524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734078_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
transcript_144537.known	chrX	+	3821	10	FSM	ENSMUSG00000031154.16	ENSMUST00000115665.2	3821	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	179.488161169477	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTATCTTGTTTGTGTGT	NA	False	NA	16	True	AATAAA	-25	NA	7708354	7742859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7708708_7708836_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738421_7739792_7739995_7740078_7740193_7740471
transcript_144540.known	chrX	+	2045	6	FSM	ENSMUSG00000031155.18	ENSMUST00000033495.15	2045	6	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	7.30479294709987	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGATTGCCATTTATAGAA	NA	False	NA	5	True	AATAAA	-15	NA	7744540	7749671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7744796_7744922_7745033_7745866_7745918_7747486_7747860_7748311_7748489_7748592
transcript_144544.known	chrX	+	1527	5	FSM	ENSMUSG00000031156.19	ENSMUST00000115663.10	1527	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	39.7586468582622	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTTGGAAAGCCTGGA	NA	False	NA	NA	False	AATAAA	-20	NA	7750482	7760703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378_7759107_7760429
transcript_144545.known	chrX	+	830	5	FSM	ENSMUSG00000031156.19	ENSMUST00000153620.3	830	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	47.1672555911408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTGGGTTGGAAAGCC	NA	False	NA	NA	False	AATAAA	-16	NA	7750585	7760699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758968_7759107_7760429
transcript_144547.known	chrX	+	584	4	FSM	ENSMUSG00000031156.19	ENSMUST00000207114.2	584	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	41.6119640915393	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGTGGCCTCCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	7750571	7758565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7750673_7751987_7752132_7755850_7756003_7758378
transcript_144548.known	chrX	+	3094	4	FSM	ENSMUSG00000031156.19	ENSMUST00000115660.12	3094	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	9.0921211313239	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGGAAGCACTCAAGCC	NA	False	NA	NA	False	NA	NA	NA	7750266	7760731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378
transcript_144549.nnic	chrX	+	2536	4	NNC	ENSMUSG00000031156.19	novel	3094	4	NA	NA	-8	0	intron_retention	FALSE	canonical	2	4	junction_2	39.7324384686702	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATGTGTAGCTTTCTGA	NA	False	NA	6	True	AATAAA	-18	NA	7750258	7760266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_7750673_7751987_7752171_7755951_7756003_7758378
transcript_144552.nic	chrX	+	652	2	ISM	ENSMUSG00000031156.19	ENSMUST00000208640.2	486	4	-26	5951	-3	22	5prime_fragment	FALSE	canonical	3	84	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGTAATATGGAGAATC	NA	False	NA	NA	False	AAGAAA	-3	NA	7750545	7752512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_7750673_7751987
transcript_144553.known	chrX	+	2213	1	FSM	ENSMUSG00000031156.19	ENSMUST00000208023.2	2213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	7750277	7752490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7750300_7752500
transcript_144554.known	chrX	+	663	4	FSM	ENSMUSG00000031156.19	ENSMUST00000123277.8	663	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	44.2894519672072	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGGGTTGGAAAGCCTG	NA	False	NA	NA	False	AATAAA	-18	NA	7750616	7760701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7760429
transcript_144556.known	chrX	-	1148	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_6	78.4950458450864	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTGTTGTTTGTAAACA	586	False	NA	-65	True	NA	NA	NA	7765218	7760821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
transcript_144557.known	chrX	-	763	7	FSM	ENSMUSG00000031157.11	ENSMUST00000156741.8	763	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	182.287014226345	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCAGCAGCGCCCTTAC	565	False	NA	NA	False	NA	NA	NA	7765239	7761032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765204
transcript_144560.known	chrX	-	1104	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_6	154.654902569847	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	296	False	NA	-1	True	AATAAA	-22	NA	7765508	7760757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
transcript_144564.known	chrX	-	436	5	FSM	ENSMUSG00000031157.11	ENSMUST00000154552.2	436	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_4	204.551949391835	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAGTCGGACCGGAATCT	669	False	NA	NA	False	NA	NA	NA	7765135	7762113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765018
transcript_144566.known	chrX	+	2381	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGCTGTTTGTC	1189	False	NA	2	True	NA	NA	NA	7765595	7774590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
transcript_144571.known	chrX	+	2193	3	FSM	ENSMUSG00000039278.11	ENSMUST00000041096.4	2193	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	26.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTCGGAGAGGGAAATC	NA	False	NA	NA	False	AATAAA	-17	NA	7786060	7790649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7786284_7788286_7788754_7789146
transcript_144573.known	chrX	-	1077	2	FSM	ENSMUSG00000031160.5	ENSMUST00000033500.5	1077	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTTTGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	7794846	7790514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7791453_7794707
transcript_144575.known	chrX	-	4142	29	FSM	ENSMUSG00000031161.16	ENSMUST00000033501.15	4142	29	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_28	71.4613049995933	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGTGCTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	7814128	7796360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813813
transcript_144576.known	chrX	-	4069	29	FSM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_28	46.7627942767691	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGCTTTTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	7814128	7796358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
transcript_144577.nnic	chrX	-	3952	29	NNC	ENSMUSG00000031161.16	novel	4069	29	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_28	77.9875709615949	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAAAGTGCTTTTTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	7814072	7796362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813945
transcript_144593.nnic	chrX	-	969	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2648	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	9.28559218478941	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7882083	7870438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_7870742_7871941_7872098_7881456_7881595_7881711
transcript_144595.known	chrX	-	2778	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115637.8	2778	6	0	0	0	0	multi-exon	TRUE	canonical	3	73	junction_5	15.551205741035	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTGAGATTTGGGAG	7355	False	NA	NA	False	NA	NA	NA	7940497	7927673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940354
transcript_144596.known	chrX	-	3116	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115638.10	3116	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	11.3947356265953	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCAAGCTGGGCCCTT	9880	False	NA	NA	False	NA	NA	NA	7940999	7927409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940782
transcript_144598.known	chrX	-	2807	5	FSM	ENSMUSG00000039231.19	ENSMUST00000150095.8	2807	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	11.6054943884352	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGGGAGATTGAGGTC	6992	False	NA	NA	False	NA	NA	NA	7940860	7927664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7929223_7929934_7930297_7936826_7937490_7938561_7938708_7940782
transcript_144599.known	chrX	+	1449	4	FSM	ENSMUSG00000087193.8	ENSMUST00000126286.8	1449	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	38.6091526281874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	7727	False	NA	29	True	TATAAA	-19	NA	7915486	7939198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7915823_7926454_7926526_7936874_7937304_7938585
transcript_144600.known	chrX	+	1177	4	FSM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	23.6971634495683	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTGGGCCACTGGAT	NA	False	NA	26	True	TATAAA	-16	NA	7917829	7939195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_7917897_7926454_7926526_7936874_7937304_7938585
transcript_144603.nnic	chrX	+	1681	3	NIC	ENSMUSG00000087193.8	novel	1449	4	NA	NA	-227	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	48	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	7424	False	NA	29	True	TATAAA	-19	NA	7915183	7939198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_7915823_7936874_7937304_7938585
transcript_144605.nnic	chrX	+	1410	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	-301	0	combination_of_known_splicesites	FALSE	canonical	3	67	junction_1	23	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	9769	False	NA	29	True	TATAAA	-19	NA	7917528	7939198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_7917897_7936874_7937304_7938585
transcript_144606.nic	chrX	+	734	3	ISM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	-42	1767	-42	-1052	5prime_fragment	FALSE	canonical	3	56	junction_1	9.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCAGGTGTTTTCTGAG	NA	False	NA	15	True	NA	NA	NA	7917787	7937428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_7917897_7926454_7926526_7936874
transcript_144607.known	chrX	-	1166	3	FSM	ENSMUSG00000039231.19	ENSMUST00000127617.2	1166	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	20	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGACCTCTGGTTTCA	7300	False	NA	NA	False	NA	NA	NA	7940552	7936667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7937490_7938561_7938708_7940354
transcript_144611.known	chrX	-	2114	12	FSM	ENSMUSG00000031165.7	ENSMUST00000033505.7	2114	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	4.36552989219744	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCAGCCACGTCGCCTG	7441	False	NA	NA	False	NA	NA	NA	7956737	7947691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7948229_7951744_7951860_7952080_7952536_7952802_7952957_7953168_7953212_7953999_7954175_7954962_7955017_7955112_7955155_7955274_7955378_7955494_7955582_7956082_7956224_7956529
transcript_144616.nnic	chrX	-	3850	10	NNC	ENSMUSG00000031166.14	novel	1749	10	NA	NA	-74	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	13.7903168747557	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGACTTGGGCCTCTCTTC	7144	False	NA	-4	True	AATAAA	-41	NA	7998824	7989544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_7991394_7991498_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525
transcript_144619.known	chrX	-	4183	9	FSM	ENSMUSG00000031166.14	ENSMUST00000033506.13	4183	9	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_8	7.92839044194974	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCCTCTCTTCATTTG	6921	False	NA	1	True	AATAAA	-21	NA	7999047	7989539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525
transcript_144627.nic	chrX	-	1735	3	ISM	ENSMUSG00000031166.14	ENSMUST00000149257.2	958	4	-82	0	-82	0	intron_retention	FALSE	canonical	3	36	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTTTAGCAAATGCAAAAG	7136	False	NA	NA	False	NA	NA	NA	7998832	7995956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_7996373_7996494_7996605_7997623
transcript_144633.known	chrX	-	2792	7	FSM	ENSMUSG00000031167.17	ENSMUST00000040010.10	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	443.550604653955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATGTGTGTTACACGTA	6561	False	NA	-3	True	ATTAAA	-16	NA	8011936	8005216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8007448_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_144634.known	chrX	-	1183	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	305.254766092558	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGATAATGCTTTTTC	6535	False	NA	-9	True	ATTAAA	-23	NA	8011962	8008599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_144635.known	chrX	-	1152	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115617.10	1152	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	339.486213105759	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	6562	False	NA	-16	True	ATTAAA	-16	NA	8011935	8008606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_144649.known	chrX	-	721	2	FSM	ENSMUSG00000031167.17	ENSMUST00000145450.2	721	2	0	0	0	0	multi-exon	FALSE	canonical	3	1172	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGAGCATGACTGCCTTC	6499	False	NA	NA	False	NA	NA	NA	8011998	8010712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8011312_8011876
transcript_144652.known	chrX	-	2648	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATTTCTCTATTTC	NA	False	NA	-7	True	NA	NA	NA	8042420	8020710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
transcript_144655.known	chrX	-	2184	5	FSM	ENSMUSG00000039201.11	ENSMUST00000143984.2	2184	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	59.3738157776641	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACAAAGGTCACTGTGGT	NA	False	NA	-26	True	NA	NA	NA	8042130	8020729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8040439_8040550_8041949
transcript_144656.known	chrX	-	2560	5	FSM	ENSMUSG00000039201.11	ENSMUST00000133093.2	2560	5	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	12.051970793194	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACTGTGGTATGTGTAT	NA	False	NA	-18	True	NA	NA	NA	8042197	8020721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8022306_8022554_8023018_8038976_8039132_8040439_8040550_8041949
transcript_144658.known	chrX	-	1743	5	FSM	ENSMUSG00000031168.15	ENSMUST00000033509.15	1743	5	0	0	0	0	multi-exon	FALSE	canonical	3	751	junction_2	18.0190871022924	718	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATATTTAATTACT	NA	False	NA	-3	True	AATAAA	-19	NA	8059751	8051567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8052073_8052882_8053014_8053121_8053159_8056317_8056676_8059039
transcript_144660.known	chrX	-	1872	15	FSM	ENSMUSG00000031169.14	ENSMUST00000077595.12	1872	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	27.1902781245392	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTCGGTTTTTTGGTTT	1988	False	NA	-2	True	AATAAA	-17	NA	8072740	8060088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8067896_8067912_8069264_8069283_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
transcript_144662.known	chrX	-	1854	14	FSM	ENSMUSG00000031169.14	ENSMUST00000089403.10	1854	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	24.4748391512445	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTCGGTTTTTTGGTTT	1988	False	NA	-2	True	AATAAA	-17	NA	8072740	8060088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8067896_8067912_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
transcript_144663.known	chrX	-	1883	14	FSM	ENSMUSG00000031169.14	ENSMUST00000082320.12	1883	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	23.6039812106789	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCGGTTTTTTGGTTTTT	1964	False	NA	0	True	AATAAA	-19	NA	8072764	8060086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069264_8069283_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
transcript_144664.known	chrX	-	1839	13	FSM	ENSMUSG00000031169.14	ENSMUST00000089402.10	1839	13	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_2	6.61857655055493	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTCGGTTTTTTGGTTT	1988	False	NA	-2	True	AATAAA	-17	NA	8072740	8060088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
transcript_144669.known	chrX	-	1529	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115594.8	1529	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	84.1872912024137	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118549	8106658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8107070_8111298_8111341_8111522_8111670_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
transcript_144670.known	chrX	-	1656	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115595.8	1656	13	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_4	23.6231995198694	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118634	8106658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
transcript_144678.known	chrX	-	1047	5	FSM	ENSMUSG00000031171.12	ENSMUST00000147467.2	1047	5	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	13.7386316640341	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTGAAGTCAATGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	8118602	8114760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
transcript_144679.known	chrX	+	1868	16	FSM	ENSMUSG00000031170.15	ENSMUST00000033512.11	1868	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	2.63818119165458	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGAGCCGTGTGTT	5413	False	NA	NA	False	AATAAA	-17	NA	8137619	8146418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_8137745_8138125_8138183_8138269_8138349_8138890_8139007_8139113_8139188_8139825_8139919_8140036_8140116_8142358_8142442_8142817_8142877_8142978_8143108_8143259_8143340_8143931_8144033_8144267_8144384_8145096_8145242_8145331_8145436_8145990
transcript_144680.known	chrX	+	2583	1	FSM	ENSMUSG00000052364.5	ENSMUST00000064196.5	2583	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTGTCTCATAATCTA	NA	False	NA	NA	False	AATACA	-25	NA	8758620	8761203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_8758600_8761200
transcript_144681.known	chrX	-	850	1	FSM	ENSMUSG00000060685.5	ENSMUST00000075792.5	850	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	395	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGTTTAAATTCTTAAC	NA	False	NA	NA	False	AATAAA	-39	NA	8842798	8841948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8841900_8842800
transcript_144682.known	chrX	-	856	1	FSM	ENSMUSG00000078206.2	ENSMUST00000105004.2	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	159	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAAGTTGATGTTTAAA	NA	False	NA	NA	False	AATAAA	-31	NA	8852994	8852138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_8852100_8853000
transcript_144683.known	chrX	+	841	1	FSM	ENSMUSG00000071815.7	ENSMUST00000096509.7	841	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAAGTTGATGTTTAAA	6682	False	NA	31	True	AATAAA	-31	NA	8899731	8900572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_8899700_8900600
transcript_144684.known	chrX	+	847	1	FSM	ENSMUSG00000072249.4	ENSMUST00000097029.4	847	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATCAAATTGATGCTTAAA	NA	False	NA	30	True	AATAAA	-30	NA	8929253	8930100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_8929300_8930100
transcript_144685.known	chrX	+	5076	3	FSM	ENSMUSG00000015342.7	ENSMUST00000015486.7	5076	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	9.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCATTTTATTTCTTGT	NA	False	NA	9	True	AATAAA	-19	NA	9138994	9179489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_9139474_9148235_9148499_9175155
transcript_144690.known	chrX	-	2176	5	FSM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_4	27.1523479647709	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTCTGGTTGATCC	NA	False	NA	-1	True	AATAAA	-21	NA	9529242	9520505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_9522303_9522618_9522697_9523279_9523404_9527218_9527261_9529107
transcript_144692.known	chrX	-	2926	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10083159	10024454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_144694.known	chrX	-	2739	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	23.3939595569027	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGTTATTGTACTTTG	NA	False	NA	NA	False	AATGAA	-20	NA	10083159	10024610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_10025089_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_144698.nic	chrX	-	2097	16	ISM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	164	4230	2	-1994	5prime_fragment	FALSE	canonical	3	85	junction_6	16.4996969669143	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGAAGTGAATTTTTC	NA	False	NA	NA	False	AGTAAA	-22	NA	10082995	10028840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_144700.nnic	chrX	-	2132	13	NIC	ENSMUSG00000031174.18	novel	2926	17	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	32.0350285711681	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10082995	10024454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_144704.known	chrX	+	1733	8	FSM	ENSMUSG00000058254.13	ENSMUST00000076354.13	1733	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_5	9.20736173961258	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTGTGGTTTTCTTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	10351396	10462844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_10351478_10445553_10445743_10448403_10448479_10450280_10450377_10451735_10451892_10456374_10456459_10461517_10461594_10461868
transcript_144705.known	chrX	+	447	2	FSM	ENSMUSG00000008035.13	ENSMUST00000144356.8	447	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGAGGTAGGCGGCAGTG	NA	False	NA	NA	False	NA	NA	NA	10581257	10584623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_10581307_10584225
transcript_144706.known	chrX	+	2022	2	FSM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1479	False	NA	NA	False	AATAAA	-15	NA	10583628	10585929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_10583944_10584222
transcript_144707.known	chrX	+	2019	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	0	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1479	False	NA	NA	False	AATAAA	-15	NA	10583628	10585929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_10583944_10584225
transcript_144708.known	chrX	-	6839	15	FSM	ENSMUSG00000040363.16	ENSMUST00000065143.14	6839	15	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_8	40.8733733995767	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAAGTACTTTGCATC	NA	False	NA	-6	True	AATAAA	-19	NA	11946792	11902978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946056
transcript_144709.known	chrX	-	6941	15	FSM	ENSMUSG00000040363.16	ENSMUST00000115513.9	6941	15	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	42.398077064597	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAAGTACTTTGCATC	NA	False	NA	-6	True	AATAAA	-19	NA	11946792	11902978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946056
transcript_144714.known	chrX	-	6785	14	FSM	ENSMUSG00000040363.16	ENSMUST00000124033.8	6785	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	49.0641410892762	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAAGTACTTTGCATC	NA	False	NA	-6	True	AATAAA	-19	NA	11946792	11902978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11922582_11925430_11926368_11926448_11927760_11927886_11946056
transcript_144724.known	chrX	-	456	4	FSM	ENSMUSG00000040363.16	ENSMUST00000123004.2	456	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	44.8503685108111	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGCTCAGAAAAAGGTCG	NA	False	NA	NA	False	NA	NA	NA	11994589	11925309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_11925430_11926368_11926448_11927760_11927886_11994457
transcript_144725.known	chrX	+	2324	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATGGTTACAGTTTTAT	NA	False	NA	84	True	AATAAA	-19	NA	12454039	12483288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
transcript_144731.known	chrX	-	2699	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	-3	True	AATAAA	-25	NA	12539907	12521117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
transcript_144732.nnic	chrX	-	3179	7	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	69	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	81.2617512869506	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	-3	True	AATAAA	-25	NA	12539838	12521117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_12523275_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
transcript_144741.known	chrX	-	6963	31	FSM	ENSMUSG00000064127.14	ENSMUST00000096495.11	6963	31	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_7	16.6631996393917	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACTCTCTTTGGTGAAG	NA	False	NA	-3	True	AATAAA	-28	NA	12628312	12541607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_12543891_12546482_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12555567_12555700_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
transcript_144747.known	chrX	-	2561	17	FSM	ENSMUSG00000064127.14	ENSMUST00000076016.6	2561	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.2362350555285	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTAAAGTGTCTAATTTT	NA	False	NA	NA	False	AATAAA	-21	NA	12628312	12575367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_12575480_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
transcript_144749.nnic	chrX	-	2106	11	NNC	ENSMUSG00000064127.14	novel	6963	31	NA	NA	-144	-34250	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	26.949768088056	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGCAGAATAATAGGTCT	NA	False	NA	NA	False	ATTAAA	-17	NA	12628456	12609617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_12609903_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667_12622695_12627705
transcript_144766.nic	chrX	+	1418	9	ISM	ENSMUSG00000031010.18	ENSMUST00000169594.9	2772	17	-25	15668	-25	-14380	5prime_fragment	FALSE	canonical	3	486	junction_1	86.0231618519106	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGAATGAAGCCAA	782	False	NA	NA	False	AAGAAA	-1	NA	12937711	12974020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902
transcript_144772.known	chrX	+	2772	17	FSM	ENSMUSG00000031010.18	ENSMUST00000169594.9	2772	17	0	0	0	0	multi-exon	TRUE	canonical	3	336	junction_14	127.465421168841	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGCCTACATGA	807	False	NA	NA	False	NA	NA	NA	12937736	12989688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406
transcript_144773.known	chrX	+	1210	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCCAGGACCACTTTGT	NA	False	NA	NA	False	AAGAAA	-28	NA	13068809	13070019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_13068800_13070000
transcript_144777.known	chrX	+	4692	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_1	98.1322449554681	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCGTTTGATTGTCCAT	NA	False	NA	18	True	AATAAA	-18	NA	13147208	13160291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
transcript_144787.known	chrX	-	4057	25	FSM	ENSMUSG00000031012.18	ENSMUST00000033321.11	4057	25	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_7	23.235172990294	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTAGTGAAATGTGTTT	NA	False	NA	-23	True	TATAAA	-36	NA	13712795	13387569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175_13652289_13712246
transcript_144790.nnic	chrX	-	2380	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	67963	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117644	16998287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
transcript_144792.nnic	chrX	-	2170	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68052	-121	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGTTTGTATTAAATGGA	NA	False	NA	NA	False	AATAAA	-36	NA	17117555	16998408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
transcript_144793.nnic	chrX	-	2147	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68045	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_12	30.7679486912382	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117562	16998287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17117502
transcript_144803.known	chrX	-	1983	5	FSM	ENSMUSG00000025040.14	ENSMUST00000026016.13	1983	5	0	0	0	0	multi-exon	TRUE	canonical	3	209	junction_3	21.435951110226	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGCTTATATATCC	NA	False	NA	-9	True	AATAAA	-21	NA	17438564	17422802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541_17437699_17438391
transcript_144806.nic	chrX	+	5593	30	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	0	-419	combination_of_known_junctions	FALSE	canonical	3	16	junction_13	47.6051186808053	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTCTATTGTTTGAGT	NA	False	NA	5	True	ATTAAA	-18	NA	18028875	18145756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
transcript_144808.known	chrX	+	5935	29	FSM	ENSMUSG00000037369.18	ENSMUST00000052368.9	5935	29	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_28	44.1203710643637	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGACTCATCATTTTTT	NA	False	NA	NA	False	AATACA	-17	NA	18028813	18146175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143803_18144864
transcript_144811.nic	chrX	+	5529	29	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	-9	-419	combination_of_known_junctions	FALSE	canonical	3	35	junction_12	44.6303982614943	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTCTATTGTTTGAGT	NA	False	NA	5	True	ATTAAA	-18	NA	18028804	18145756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
transcript_144815.nic	chrX	+	5319	28	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	-17	-419	combination_of_known_junctions	FALSE	canonical	3	25	junction_12	40.8616387994563	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTCTATTGTTTGAGT	NA	False	NA	5	True	ATTAAA	-18	NA	18028858	18145756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
transcript_144823.known	chrX	+	2206	2	FSM	ENSMUSG00000037347.8	ENSMUST00000044138.8	2206	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTATCTAGTGGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	19925798	19963760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_19927448_19963203
transcript_144826.known	chrX	+	4417	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGATGTCTATACTT	NA	False	NA	3	True	AATAAA	-18	NA	20230719	20267092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
transcript_144832.nnic	chrX	+	4799	13	NNC	ENSMUSG00000037315.16	novel	2472	10	NA	NA	-352	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	41.5759011394288	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCAGTGTGATGATT	NA	False	NA	9	True	ATTAAA	-17	NA	20291574	20386178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_20291651_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
transcript_144834.known	chrX	+	4866	13	FSM	ENSMUSG00000037315.16	ENSMUST00000115384.9	4866	13	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	19.6800801714717	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCAGTGTGATGATT	NA	False	NA	9	True	ATTAAA	-17	NA	20291926	20386178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20292070_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
transcript_144838.known	chrX	+	1156	8	FSM	ENSMUSG00000037315.16	ENSMUST00000136093.2	1156	8	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	23.5233275447057	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAATAAAAATTAGGC	NA	False	NA	NA	False	TTTAAA	-2	NA	20292026	20360825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20292070_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395
transcript_144843.nic	chrX	+	3861	24	NIC	ENSMUSG00000031060.17	novel	3698	24	NA	NA	-194	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_4	89.4718170663217	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCCATTTCTACTTTCT	81	False	NA	28	True	AATAAA	-16	NA	20483547	20517127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
transcript_144844.known	chrX	+	3564	24	FSM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	93.2983708932913	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	394	False	NA	41	True	AATAAA	-29	NA	20483860	20517140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
transcript_144850.known	chrX	+	3698	24	FSM	ENSMUSG00000031060.17	ENSMUST00000115375.8	3698	24	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	114.836729664995	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCCATTTCTACTTTCT	275	False	NA	28	True	AATAAA	-16	NA	20483741	20517127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20484322_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
transcript_144858.nic	chrX	+	3881	23	NIC	ENSMUSG00000031060.17	novel	3698	24	NA	NA	-445	0	combination_of_known_junctions	FALSE	canonical	3	194	junction_9	67.1727297333874	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCCATTTCTACTTTCT	NA	False	NA	28	True	AATAAA	-16	NA	20483296	20517127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
transcript_144859.known	chrX	+	3172	23	FSM	ENSMUSG00000031060.17	ENSMUST00000084383.10	3172	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_9	72.7799809002085	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	555	False	NA	41	True	AATAAA	-29	NA	20484021	20517140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
transcript_1449.known	chr1	-	2838	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	8.25590697622012	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	False	NA	-1	True	AATAAA	-32	NA	51517558	51508646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
transcript_144901.nic	chrX	+	2593	18	NIC	ENSMUSG00000031060.17	novel	2160	17	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_4	91.5263495631715	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAAAACAGCTTCCAGC	355	False	NA	NA	False	AAAAAG	-5	NA	20483821	20515435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382
transcript_144902.nic	chrX	+	3121	18	ISM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	-564	1705	-445	0	5prime_fragment	FALSE	canonical	3	108	junction_4	95.9454501879308	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAAAACAGCTTCCAGC	NA	False	NA	NA	False	AAAAAG	-5	NA	20483296	20515435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382
transcript_144908.nic	chrX	+	2322	17	NIC	ENSMUSG00000031060.17	novel	3698	24	NA	NA	-21	-814	combination_of_known_junctions	FALSE	canonical	3	108	junction_4	93.9481031939975	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAAGAGAAGCATAA	534	False	NA	14	True	NA	NA	NA	20484000	20514621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495
transcript_144909.nic	chrX	+	3029	17	ISM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	-564	2519	-445	-814	5prime_fragment	TRUE	canonical	3	108	junction_4	98.4622389548399	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAAGAGAAGCATAA	NA	False	NA	14	True	NA	NA	NA	20483296	20514621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495
transcript_144914.known	chrX	+	2160	17	FSM	ENSMUSG00000031060.17	ENSMUST00000141128.2	2160	17	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_9	66.2334885084577	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAAAACAGCTTCCAGC	557	False	NA	NA	False	AAAAAG	-5	NA	20484023	20515435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382
transcript_144916.nic	chrX	+	2191	17	ISM	ENSMUSG00000031060.17	ENSMUST00000084383.10	3172	23	-26	1705	-26	0	5prime_fragment	FALSE	canonical	3	151	junction_9	73.2160490859074	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAAAACAGCTTCCAGC	529	False	NA	NA	False	AAAAAG	-5	NA	20483995	20515435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382
transcript_144924.nic	chrX	+	2140	16	ISM	ENSMUSG00000031060.17	ENSMUST00000141128.2	2160	17	-72	814	-70	-814	5prime_fragment	FALSE	canonical	3	194	junction_9	68.2724606916207	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAAGAGAAGCATAA	485	False	NA	14	True	NA	NA	NA	20483951	20514621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495
transcript_144925.nic	chrX	+	2511	16	ISM	ENSMUSG00000031060.17	ENSMUST00000084383.10	3172	23	-438	2519	-158	-814	5prime_fragment	FALSE	canonical	3	151	junction_9	75.4528255858513	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAAGAGAAGCATAA	117	False	NA	14	True	NA	NA	NA	20483583	20514621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495
transcript_144936.known	chrX	-	908	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	0	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_1	70	992	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483858	20481564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_20481782_20481952_20482084_20483298
transcript_144945.known	chrX	+	4044	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	0	0	0	0	multi-exon	TRUE	canonical	3	1167	junction_1	494.469940036804	1746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTAAGTTCGCATGTT	NA	False	NA	NA	False	NA	NA	NA	20524564	20549418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
transcript_144960.known	chrX	+	4071	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	0	0	0	0	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	2113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTAAGTTCGCATGTT	NA	False	NA	NA	False	NA	NA	NA	20529136	20549418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
transcript_1450.known	chr1	-	708	6	FSM	ENSMUSG00000026107.12	ENSMUST00000185534.2	708	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	22.105203007437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTTATATTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	51517558	51510300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517459
transcript_145055.nnic	chrX	+	3038	17	NNC	ENSMUSG00000031065.15	novel	3120	16	NA	NA	-20	0	intron_retention	FALSE	non_canonical	0	0	junction_1	408.655703955053	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGGTTATAAATCATCAA	2304	False	NA	18	True	ATTAAA	-20	NA	20554636	20566119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_20554881_20554982_20555046_20559562_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
transcript_145078.known	chrX	+	3120	16	FSM	ENSMUSG00000031065.15	ENSMUST00000033380.7	3120	16	0	0	0	0	multi-exon	FALSE	canonical	3	1538	junction_15	84.886172149663	2322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGGTTATAAATCATCAA	2324	False	NA	18	True	ATTAAA	-20	NA	20554656	20566119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20555046_20559562_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
transcript_1451.known	chr1	-	972	6	FSM	ENSMUSG00000026107.12	ENSMUST00000188204.7	972	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	20.9227149289952	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTGAGTATTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	51517558	51509965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517530
transcript_14514.known	chr10	+	934	4	FSM	ENSMUSG00000040280.11	ENSMUST00000035735.11	934	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	3.29983164553722	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGCGCCTGCTAATCA	NA	False	NA	NA	False	AATACA	-21	NA	127350835	127353023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127350908_127351267_127351357_127352133_127352195_127352311
transcript_14516.known	chr10	-	1675	2	FSM	ENSMUSG00000040258.7	ENSMUST00000095266.3	1675	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCGCCTGTGTTAAGA	127	False	NA	NA	False	AATAAA	-10	NA	127370428	127361341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127362833_127370244
transcript_14517.known	chr10	+	3775	22	FSM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	71.0521510108266	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAATCTACTGTACACA	2271	False	NA	-6	True	AATAAA	-22	NA	127478854	127496826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127479119_127482759_127482897_127483553_127483693_127483974_127484059_127486564_127486704_127486821_127486875_127487025_127487175_127487818_127487951_127488059_127488249_127488853_127488942_127489075_127489199_127490794_127490888_127491165_127491373_127492792_127492888_127492976_127493114_127493424_127493572_127494065_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
transcript_145172.nic	chrX	+	3303	22	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	-16	-249	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	70.5175554282958	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACAGTGTGGCTTTGTTTC	NA	False	NA	6	True	CATAAA	-21	NA	20570128	20586527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_20570359_20573150_20573222_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
transcript_145173.nic	chrX	+	3554	22	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	70.5175554282958	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGCTGTTTTGAGTGTT	NA	False	NA	3	True	NA	NA	NA	20570128	20586778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_20570359_20573150_20573222_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
transcript_145175.known	chrX	+	3467	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGCTGTTTTGAGTGTT	NA	False	NA	3	True	NA	NA	NA	20570144	20586778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
transcript_145203.nic	chrX	+	2254	16	NIC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-34	-107	combination_of_known_junctions	TRUE	non_canonical	1	66	junction_12	96.2243674382372	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGCCTGATGTGTCTT	1089	False	NA	23	True	NA	NA	NA	20664018	20726629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
transcript_145204.nic	chrX	+	2383	16	NIC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-34	0	combination_of_known_junctions	FALSE	non_canonical	1	66	junction_12	96.2243674382372	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	1089	False	NA	23	True	NA	NA	NA	20664018	20726758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
transcript_145205.known	chrX	+	2358	16	FSM	ENSMUSG00000001127.13	ENSMUST00000001155.11	2358	16	0	0	0	0	multi-exon	FALSE	non_canonical	1	66	junction_12	87.7031356337959	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	6273	False	NA	23	True	NA	NA	NA	20714781	20726758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
transcript_145224.known	chrX	+	2581	10	FSM	ENSMUSG00000001127.13	ENSMUST00000152955.8	2581	10	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_6	87.3856218927361	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6294	False	NA	NA	False	NA	NA	NA	20714802	20721749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151
transcript_14523.known	chr10	+	6002	9	FSM	ENSMUSG00000040195.12	ENSMUST00000048099.5	6002	9	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	22.4499443206436	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTAGTCTTTTTAAATTAA	NA	False	NA	16	True	AATAAA	-16	NA	127512934	127536918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297_127530524_127531237_127531412_127532096
transcript_145234.nnic	chrX	+	953	7	NNC	ENSMUSG00000001127.13	novel	826	8	NA	NA	-2	-37	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	124.993333155546	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGTCATTATGATATGT	6271	False	NA	NA	False	AATAAA	-17	NA	20714779	20719091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20718834
transcript_145237.known	chrX	+	1520	6	FSM	ENSMUSG00000001127.13	ENSMUST00000120356.8	1520	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	64.9935381403413	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	6308	False	NA	NA	False	AATAAA	-12	NA	20714816	20719128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
transcript_145239.known	chrX	+	833	6	FSM	ENSMUSG00000001131.12	ENSMUST00000009530.5	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	211.264384125673	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTCTGTATAGTGTTT	NA	False	NA	18	True	AATAAA	-19	NA	20736459	20740974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20736564_20737269_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
transcript_145240.nnic	chrX	+	845	5	NIC	ENSMUSG00000001131.12	novel	883	6	NA	NA	-42	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	293.187226870476	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTTCTGTATAGTGT	NA	False	NA	16	True	AATAAA	-17	NA	20736362	20740972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_20736564_20737272_20737402_20739288_20739416_20739606_20739732_20740709
transcript_145242.known	chrX	+	2854	5	FSM	ENSMUSG00000001127.13	ENSMUST00000122312.8	2854	5	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	33.6600653594137	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTGTCCTTCATTGTT	6296	False	NA	NA	False	AATAAA	-27	NA	20714804	20719143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
transcript_145245.known	chrX	-	1636	9	FSM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	23.4837044564949	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAATATTGTGAAATAT	NA	False	NA	73	True	AATAGA	-13	NA	20797794	20791692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_20791999_20793519_20793632_20793773_20793963_20794191_20794366_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
transcript_145251.nnic	chrX	-	3057	10	Fusion	ENSMUSG00000001134.10_ENSMUSG00000009406.14	novel	3548	6	NA	NA	-7	-761	multi-exon	FALSE	canonical	1	4	junction_5	264.516516789256	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGGTATTTTTTTTTC	NA	False	NA	-1	True	AATATA	-24	NA	20828246	20800394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_145260.known	chrX	-	636	7	FSM	ENSMUSG00000001134.10	ENSMUST00000001162.10	636	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	225.323039705713	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAATCACATAGTCCTTT	NA	False	NA	-14	True	ATTAAA	-14	NA	20828239	20818167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827873_20828026_20828172
transcript_145261.known	chrX	-	875	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	60.2699943771544	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAGATTCAATTGGTAGC	NA	False	NA	NA	False	CATAAA	-22	NA	20828256	20817900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_145265.known	chrX	+	1144	6	FSM	ENSMUSG00000086877.8	ENSMUST00000123462.8	1144	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	58.2594198391985	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTTTATTGTACATCA	NA	False	NA	NA	False	ATTAAA	-17	NA	20827922	20852962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_20827952_20828088_20828218_20828775_20828897_20833967_20834048_20851664_20851705_20852217
transcript_14527.known	chr10	+	1522	7	FSM	ENSMUSG00000040195.12	ENSMUST00000118612.8	1522	7	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_4	19.2411595862157	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGAGTTTGACTACTCT	NA	False	NA	NA	False	AATAAA	-23	NA	127512932	127531037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297
transcript_145273.known	chrX	-	3548	6	FSM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.1666244725062	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGAGGGAAATG	NA	False	NA	NA	False	NA	NA	NA	20816847	20799633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20816678
transcript_145276.nnic	chrX	-	498	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	227.721760049408	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828248	20818161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_20818263_20818446_20818511_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_145286.known	chrX	-	714	5	FSM	ENSMUSG00000001134.10	ENSMUST00000142341.2	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	51.773545368267	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTACCCTTTTCCCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	20828225	20825300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_145288.known	chrX	-	2246	2	FSM	ENSMUSG00000009406.14	ENSMUST00000148133.2	2246	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATAAAATAAAAAATAAGCA	NA	False	NA	NA	False	NA	NA	NA	20816847	20805959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_20808037_20816678
transcript_145289.known	chrX	-	3160	5	FSM	ENSMUSG00000054737.12	ENSMUST00000115334.8	3160	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	3.67423461417477	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATATTGTATTCCTTTAA	3236	False	NA	-5	True	TTTAAA	-1	NA	20928291	20895181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_20897892_20902575_20902711_20902866_20903012_20926741_20926797_20928176
transcript_145294.nic	chrX	-	3351	10	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	389.833899418461	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23231370	23085524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732_23227824_23231194
transcript_14530.known	chr10	-	2582	7	FSM	ENSMUSG00000025402.13	ENSMUST00000026469.9	2582	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	9.00771274458111	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGGCCCCCTTCCCCTC	NA	False	NA	-1	True	AATAAA	-21	NA	127502579	127496786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127497649_127498599_127498792_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
transcript_145300.nnic	chrX	-	3438	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3787	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_6	415.817192405509	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23185205	23085524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23184851
transcript_145301.nic	chrX	-	3288	9	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3356	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	366.28779668452	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23227936	23085524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732
transcript_145305.known	chrX	-	3251	9	FSM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	0	0	0	0	multi-exon	TRUE	canonical	3	241	junction_8	283.721694623446	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCGTTACTCCTCAGTTT	NA	False	NA	-8	True	AATAAA	-29	NA	23231321	23085509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
transcript_145306.nnic	chrX	-	3372	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3787	0	at_least_one_novel_splicesite	FALSE	canonical	3	222	junction_7	307.654590309938	94	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23185205	23085524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
transcript_145307.nic	chrX	-	3222	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3385	15	3356	0	3prime_fragment	FALSE	canonical	3	772	junction_6	153.107671864193	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23227936	23085524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
transcript_145314.known	chrX	-	2996	7	FSM	ENSMUSG00000036782.14	ENSMUST00000035973.5	2996	7	0	0	0	0	multi-exon	FALSE	canonical	3	772	junction_6	147.505272975428	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23181418	23085524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368
transcript_145315.known	chrX	+	4167	20	FSM	ENSMUSG00000036769.15	ENSMUST00000035766.13	4167	20	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	9.86248944541599	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATAAATGATTGTC	NA	False	NA	NA	False	ATTAAA	-12	NA	23559289	23672229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
transcript_145323.known	chrX	+	2291	3	FSM	ENSMUSG00000036769.15	ENSMUST00000142600.2	2291	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAACAAAAGCATTG	NA	False	NA	NA	False	AATAAA	-3	NA	23559315	23617938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_23559779_23598556_23598591_23616144
transcript_145324.known	chrX	-	907	9	FSM	ENSMUSG00000094624.2	ENSMUST00000179874.2	907	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.992156741649222	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	28074048	28051125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_28051300_28051618_28051718_28054166_28054249_28062445_28062510_28062821_28062948_28066071_28066107_28066645_28066713_28072320_28072444_28073911
transcript_145326.known	chrX	-	907	9	FSM	ENSMUSG00000094759.8	ENSMUST00000180344.8	907	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.992156741649222	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	30542588	30519660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_30519835_30520153_30520253_30522701_30522784_30530981_30531046_30531357_30531484_30534607_30534643_30535181_30535249_30540856_30540980_30542451
transcript_145327.known	chrX	+	928	9	FSM	ENSMUSG00000073245.11	ENSMUST00000101645.10	928	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	3.49106001094224	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	34667835	34690746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_34667977_34669420_34669544_34675151_34675219_34675757_34675793_34678902_34679029_34679340_34679405_34687606_34687689_34690137_34690237_34690555
transcript_145328.nic	chrX	+	6888	54	NIC	ENSMUSG00000031093.15	novel	6665	53	NA	NA	-184	0	combination_of_known_junctions	TRUE	canonical	1	53	junction_53	22.4821593760484	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTCGAAGTGAAGGAAATA	NA	False	NA	8	True	AATAAA	-20	NA	35152300	35340215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_35152686_35208063_35208181_35208264_35208355_35209368_35209452_35210537_35210608_35210959_35211056_35224254_35224390_35226891_35227070_35227434_35227515_35228698_35228783_35232342_35232484_35233689_35233903_35239699_35239823_35241139_35241223_35243959_35244083_35244267_35244345_35246087_35246273_35246359_35246426_35248452_35248546_35251145_35251270_35256685_35256808_35257250_35257338_35258076_35258167_35263740_35263860_35266162_35266233_35266318_35266445_35267653_35267726_35270252_35270400_35271726_35271811_35272991_35273104_35273595_35273635_35275284_35275464_35277562_35277680_35279866_35279943_35280450_35280561_35283644_35283757_35291952_35292020_35293633_35293682_35295933_35296077_35297955_35298072_35301191_35301330_35304764_35304948_35308518_35308633_35310706_35310923_35311010_35311069_35316133_35316241_35323200_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
transcript_145329.known	chrX	+	6665	53	FSM	ENSMUSG00000031093.15	ENSMUST00000033419.13	6665	53	0	0	0	0	multi-exon	FALSE	canonical	1	53	junction_52	21.5813446724207	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTCGAAGTGAAGGAAATA	NA	False	NA	8	True	AATAAA	-20	NA	35152484	35340215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_35152686_35208063_35208181_35208264_35208355_35209368_35209452_35210537_35210608_35210959_35211056_35224254_35224390_35226891_35227070_35227434_35227515_35228698_35228783_35232342_35232484_35233689_35233903_35239699_35239823_35241139_35241223_35243959_35244083_35244267_35244345_35246087_35246273_35246359_35246426_35248452_35248546_35251145_35251270_35256685_35256808_35257250_35257338_35258076_35258167_35263740_35263860_35266162_35266233_35266318_35266445_35267653_35267726_35270252_35270400_35271726_35271811_35272991_35273104_35275284_35275464_35277562_35277680_35279866_35279943_35280450_35280561_35283644_35283757_35291952_35292020_35293633_35293682_35295933_35296077_35297955_35298072_35301191_35301330_35304764_35304948_35308518_35308633_35310706_35310923_35311010_35311069_35316133_35316241_35323200_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
transcript_145338.known	chrX	+	3712	11	FSM	ENSMUSG00000017057.10	ENSMUST00000033418.8	3712	11	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	4.27083130081252	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTGGTC	NA	False	NA	NA	False	AATAAA	-24	NA	35375762	35434912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_35375929_35390297_35390438_35394256_35394396_35396616_35396738_35404865_35405051_35407663_35407816_35412302_35412351_35412631_35412765_35415670_35415768_35419195_35419281_35432466
transcript_145340.known	chrX	-	606	1	FSM	ENSMUSG00000081159.2	ENSMUST00000118217.2	606	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATATAGACTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	35477782	35477176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_35477200_35477800
transcript_145342.known	chrX	+	2911	11	FSM	ENSMUSG00000016239.12	ENSMUST00000016383.10	2911	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	7.36478105580879	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTCATACTTCTTTCTG	NA	False	NA	NA	False	TATAAA	-15	NA	35592005	35625994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_35593053_35596168_35596288_35598864_35598988_35605275_35605520_35606294_35606386_35614654_35614770_35617494_35617617_35619698_35619858_35621138_35621302_35622258_35622409_35625416
transcript_145344.known	chrX	+	2278	4	FSM	ENSMUSG00000016239.12	ENSMUST00000135758.2	2278	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	4.64279609239471	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTGATTTACTGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	35592005	35606264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_35593053_35596168_35596288_35598864_35598988_35605275
transcript_145345.known	chrX	+	1857	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	42	507	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	1668	False	NA	NA	False	AATAAA	-15	NA	35861858	35869732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_35862268_35865773_35865930_35868440
transcript_145348.nic	chrX	-	1309	4	ISM	ENSMUSG00000059708.13	ENSMUST00000051906.13	6003	7	12	10316	12	-6751	5prime_fragment	FALSE	canonical	3	11	junction_1	14.6590889515307	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAGAAGAGGAAGTAG	NA	False	NA	-27	True	NA	NA	NA	35909036	35882282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_35882387_35887220_35887990_35900125_35900228_35908702
transcript_145349.nic	chrX	-	636	3	ISM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-357	6725	-58	-6725	5prime_fragment	FALSE	canonical	3	34	junction_1	5.5	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGTGGGCTGAATTTTA	NA	False	NA	-1	True	NA	NA	NA	35909106	35882256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_35882387_35900125_35900228_35908702
transcript_14535.known	chr10	-	2311	6	FSM	ENSMUSG00000025402.13	ENSMUST00000099157.4	2311	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	16.4851448279959	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCATGGCCCCCTTCCCCT	NA	False	NA	-2	True	AATAAA	-20	NA	127502501	127496787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127497649_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
transcript_145350.known	chrX	+	1111	5	FSM	ENSMUSG00000037636.7	ENSMUST00000047655.7	1111	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	2.69258240356725	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCTGACTAGAACTAC	NA	False	NA	NA	False	AAAACA	-13	NA	36007311	36040855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36007672_36015785_36016028_36021420_36021594_36039134_36039270_36040654
transcript_145354.known	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	6314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	29	True	AATAAA	-31	NA	36059303	36062460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
transcript_145357.known	chrX	+	989	2	FSM	ENSMUSG00000016319.4	ENSMUST00000126608.2	989	2	0	0	0	0	multi-exon	FALSE	canonical	3	12606	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAAGCTTGTGGTAGATA	NA	False	NA	NA	False	NA	NA	NA	36059306	36061296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36059495_36060495
transcript_145359.nnic	chrX	-	1275	7	NIC	ENSMUSG00000006423.16	novel	678	3	NA	NA	-3	8966	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	75.5389891968968	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGTAAGAGCTGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	36127894	36078423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_36078984_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
transcript_145363.known	chrX	-	3340	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTGTTTTGATCATTT	NA	False	NA	NA	False	AATAAA	-28	NA	36127899	36112195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
transcript_145366.known	chrX	+	552	6	FSM	ENSMUSG00000016308.13	ENSMUST00000201117.4	552	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	359.082497484909	496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGAACAAAGCTGGCGCG	NA	False	NA	NA	False	NA	NA	NA	36138010	36146765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36138183_36138370_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
transcript_145373.known	chrX	-	4673	11	FSM	ENSMUSG00000050379.16	ENSMUST00000053456.11	4673	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	18.537529500988	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGTGTGTGTGGTGTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	36253309	36177098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36180199_36184021_36184067_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_145375.known	chrX	-	3457	10	FSM	ENSMUSG00000050379.16	ENSMUST00000060474.14	3457	10	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_1	15.297865581774	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	36253309	36174978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36176908_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_145377.known	chrX	-	1845	10	FSM	ENSMUSG00000050379.16	ENSMUST00000115239.10	1845	10	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	15.8869462681912	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAGGGCAGGGGCCATT	NA	False	NA	NA	False	AATAAA	-27	NA	36253309	36178683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36179001_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_145380.nnic	chrX	-	2281	10	NIC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	-39	-801	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	11.2940495640649	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGAGTCTTGATTCATA	NA	False	NA	NA	False	AATAAA	-18	NA	36253348	36179484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_145387.known	chrX	-	612	3	FSM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	12849	junction_1	35	2871	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36349055	36346172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36346403_36347637_36347742_36348777
transcript_145391.nic	chrX	-	1306	10	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	0	61	combination_of_known_junctions	FALSE	canonical	3	132	junction_2	56.9368287590361	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAGAGTGAGAATAC	NA	False	NA	43	True	GATAAA	-1	NA	36373975	36359267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_1454.known	chr1	-	4767	31	FSM	ENSMUSG00000018417.15	ENSMUST00000018561.14	4767	31	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_21	30.4396671028665	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCATTTGCTGGATTACAA	NA	False	NA	NA	False	AATAAA	-16	NA	51955087	51789152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_14540.nic	chr10	+	3089	24	ISM	ENSMUSG00000025401.10	ENSMUST00000079590.7	3439	27	1584	5	1584	0	3prime_fragment	FALSE	canonical	2	6	junction_6	3.36837286056462	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATACATATGCGTATTTAT	NA	False	NA	17	True	AATAAA	-23	NA	127542622	127556804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_127542794_127542995_127543043_127543222_127543287_127543486_127543586_127546018_127546123_127546242_127546391_127546746_127546866_127546952_127547040_127548452_127548519_127548631_127548737_127549589_127549653_127549853_127550055_127550194_127550422_127550749_127550951_127551118_127551213_127551500_127551651_127551745_127551815_127552156_127552232_127554380_127554516_127555119_127555227_127555501_127555635_127555736_127555890_127556021_127556150_127556461
transcript_145400.nic	chrX	-	954	7	ISM	ENSMUSG00000036572.17	ENSMUST00000133481.2	2553	8	-128	2129	-128	-2129	5prime_fragment	FALSE	canonical	3	185	junction_1	36.3061825160521	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATATAGAAAAACTAAAGAA	NA	False	NA	44	True	NA	NA	NA	36374103	36363231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_145401.nic	chrX	-	886	7	ISM	ENSMUSG00000036572.17	ENSMUST00000133481.2	2553	8	-128	2197	-128	-2197	5prime_fragment	FALSE	canonical	3	185	junction_1	36.3061825160521	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAGAGGAAAAGGCAAAGA	NA	False	NA	-24	True	NA	NA	NA	36374103	36363299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_145406.nic	chrX	-	734	6	ISM	ENSMUSG00000036572.17	ENSMUST00000133481.2	2553	8	-19	2643	-19	-2643	5prime_fragment	FALSE	canonical	3	220	junction_1	30.0559478306707	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGTTCCTTTTGGTAG	NA	False	NA	NA	False	NA	NA	NA	36373994	36363745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_145411.nic	chrX	-	644	4	ISM	ENSMUSG00000036572.17	ENSMUST00000133481.2	2553	8	-128	7023	-128	-7023	5prime_fragment	FALSE	canonical	3	248	junction_1	24.1660919471891	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGATTAAGAAAAGAGATA	NA	False	NA	16	True	AAAAAG	-11	NA	36374103	36368125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_36368181_36372567_36372675_36372800_36372908_36373728
transcript_145412.known	chrX	+	4230	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	0	0	0	0	multi-exon	TRUE	canonical	3	360	junction_3	33.4381425171914	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTTAATGTGTGGATT	NA	False	NA	24	True	AATAAA	-24	NA	36390447	36414399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
transcript_145417.nic	chrX	+	973	5	ISM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-43	11014	-43	-2137	5prime_fragment	FALSE	canonical	3	360	junction_3	30.7520324531567	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGAGGGTCAGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	36390404	36403385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329
transcript_145418.nic	chrX	+	843	4	ISM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-43	13928	-43	-5051	5prime_fragment	FALSE	canonical	3	360	junction_3	31.947874212014	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTCATCTAAAAGAAAACATA	NA	False	NA	NA	False	AAAAAG	-12	NA	36390404	36400471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404
transcript_145419.nic	chrX	+	917	4	ISM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-43	13854	-43	-4977	5prime_fragment	FALSE	canonical	3	360	junction_3	31.947874212014	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAAAGCCGTATCATTC	NA	False	NA	NA	False	NA	NA	NA	36390404	36400545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404
transcript_145420.nic	chrX	+	776	3	ISM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-43	14164	-43	-5287	5prime_fragment	FALSE	canonical	3	424	junction_2	3.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATTTTATAAAATAAGGG	NA	False	NA	NA	False	AAGAAA	-29	NA	36390404	36400235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_36391029_36394630_36394712_36400164
transcript_145422.known	chrX	-	419	3	FSM	ENSMUSG00000016427.8	ENSMUST00000016571.8	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	2951	junction_1	110	762	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTTTATTTTTATGAA	2312	False	NA	-1	True	AATAAA	-20	NA	36454816	36451240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36451395_36453526_36453617_36454641
transcript_145423.known	chrX	+	1223	1	FSM	ENSMUSG00000036537.7	ENSMUST00000046433.7	1223	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTTTCTTTCTTTCT	NA	False	NA	21	True	AATAAA	-21	NA	36454897	36456120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36454900_36456100
transcript_145424.known	chrX	-	817	4	FSM	ENSMUSG00000073243.3	ENSMUST00000101636.3	817	4	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_3	3.74165738677394	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGCAAATTGAACAAATTTA	NA	False	NA	NA	False	ATTAAA	-12	NA	36474694	36473000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36473184_36473576_36473674_36473912_36474226_36474470
transcript_145425.nic	chrX	-	910	4	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	3823	0	3823	0	3prime_fragment	FALSE	canonical	3	106	junction_3	6.34209919681348	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGAATTCTCGACATGT	NA	False	NA	-23	True	AATAAA	-1	NA	36482088	36477456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_36477701_36479202_36479249_36481305_36481649_36481811
transcript_145426.known	chrX	+	795	4	FSM	ENSMUSG00000051827.12	ENSMUST00000063340.12	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	56.8174464598878	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36508628	36513339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36508740_36508901_36509314_36510828_36510875_36513113
transcript_145427.known	chrX	+	828	4	FSM	ENSMUSG00000095601.9	ENSMUST00000096459.11	828	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTGTCCCATGTGCCT	NA	False	NA	NA	False	NA	NA	NA	36562040	36566141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36562222_36562471_36562842_36564717_36564764_36565910
transcript_145429.known	chrX	+	799	4	FSM	ENSMUSG00000079638.9	ENSMUST00000115191.7	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	23.6126143312331	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36593719	36598459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36593831_36593992_36594405_36595944_36595991_36598229
transcript_145432.known	chrX	+	887	4	FSM	ENSMUSG00000071771.5	ENSMUST00000096458.5	887	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.87400787401181	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	9300	False	NA	NA	False	AATAAA	-21	NA	36614146	36618932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36614345_36614534_36614941_36617340_36617387_36618695
transcript_145433.known	chrX	+	685	4	FSM	ENSMUSG00000095698.3	ENSMUST00000115179.4	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	8.9938250421547	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGACAGATGATGTTGTG	6889	False	NA	NA	False	NA	NA	NA	36675080	36679276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36675169_36675331_36675744_36677299_36677346_36679137
transcript_145435.known	chrX	+	735	5	FSM	ENSMUSG00000096788.9	ENSMUST00000184746.2	735	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	31.4523449046331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGCCAGACGATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	36712126	36723375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36721255_36721305_36723236
transcript_145436.known	chrX	+	799	4	FSM	ENSMUSG00000096788.9	ENSMUST00000072167.10	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	24.1246761636296	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36712104	36723466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36723236
transcript_145437.nnic	chrX	+	730	4	NNC	ENSMUSG00000096788.9	novel	799	4	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_3	23.6690139681023	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36712090	36723466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_36712216_36712377_36712790_36720942_36720989_36723319
transcript_145438.known	chrX	+	799	4	FSM	ENSMUSG00000095741.4	ENSMUST00000115173.5	799	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	1.69967317119759	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	9346	False	NA	NA	False	AATAAA	-16	NA	36753057	36757816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36753169_36753330_36753743_36755287_36755334_36757586
transcript_145439.known	chrX	-	795	4	FSM	ENSMUSG00000079629.6	ENSMUST00000115169.4	795	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.03957069398096	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36825123	36820769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36820996_36822809_36822856_36824438_36824851_36825012
transcript_145441.known	chrX	-	979	4	FSM	ENSMUSG00000079628.4	ENSMUST00000115166.3	979	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1.24721912892465	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	6368	False	NA	NA	False	AATAAA	-21	NA	36832980	36828152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36828390_36829677_36829724_36832090_36832497_36832690
transcript_145443.known	chrX	-	779	4	FSM	ENSMUSG00000079627.3	ENSMUST00000115162.2	779	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	11.2644968324772	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	9229	False	NA	NA	False	AATAAA	-12	NA	36854930	36850649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36850876_36852672_36852719_36854261_36854674_36854835
transcript_145447.known	chrX	+	893	6	FSM	ENSMUSG00000095180.11	ENSMUST00000184866.10	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	2792	junction_1	493.533626007388	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8505	False	NA	17	True	ATTAAA	-14	NA	36891635	36897308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
transcript_145448.known	chrX	+	868	6	FSM	ENSMUSG00000095180.11	ENSMUST00000239523.1	868	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1588.16578479704	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	9192	False	NA	20	True	ATTAAA	-17	NA	36892322	36897311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36892366_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
transcript_14545.nnic	chr10	+	723	6	NNC	ENSMUSG00000025400.12	novel	514	3	NA	NA	-59	0	at_least_one_novel_splicesite	TRUE	canonical	3	36	junction_5	3.96988664825584	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACTGATGCAATAGGCT	NA	False	NA	6	True	AATAAA	-16	NA	127563656	127567636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_127563897_127564039_127564146_127564315_127564346_127564982_127565037_127565344_127565419_127567417
transcript_145450.known	chrX	+	1010	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36915786	36918734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
transcript_145451.nnic	chrX	+	796	4	NNC	ENSMUSG00000006200.4	novel	1010	4	NA	NA	296	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	87.0899917709645	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36916082	36918734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_36916139_36916242_36916703_36917291_36917338_36918500
transcript_145455.known	chrX	-	882	4	FSM	ENSMUSG00000068048.9	ENSMUST00000089062.8	882	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	21.013223349966	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGGCTCCATTATCTT	1078	False	NA	-1	True	AATAAA	-16	NA	36990647	36987973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_36988177_36989156_36989203_36989828_36990289_36990474
transcript_145456.known	chrX	+	876	3	FSM	ENSMUSG00000050197.6	ENSMUST00000152730.4	876	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	2	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTTAATTTTATGTGC	NA	False	NA	2	True	AATAAA	-15	NA	37210095	37218844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_37210700_37211950_37211997_37218618
transcript_145459.known	chrX	-	1769	9	FSM	ENSMUSG00000016534.16	ENSMUST00000016678.14	1769	9	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	278.250982702667	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGTTTCAATTTGTAA	NA	False	NA	-1	True	AATAAA	-18	NA	37545331	37493938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
transcript_14546.known	chr10	+	5960	2	FSM	ENSMUSG00000044617.9	ENSMUST00000054287.9	5960	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAATTTGAAGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	127575406	127583218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127575532_127577383
transcript_145460.known	chrX	-	3604	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	-22	True	AATAAA	-19	NA	37545331	37508383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
transcript_145464.known	chrX	-	3090	23	FSM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	0	0	0	0	multi-exon	FALSE	non_canonical	3	112	junction_22	288.723912992818	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTTATTTGACTTCT	NA	False	NA	-5	True	GATAAA	-14	NA	37665060	37622450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37664956
transcript_145465.known	chrX	-	3344	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	0	0	0	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTCATTTAAAGATACT	NA	False	NA	-28	True	AATAAA	-20	NA	37665073	37622150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
transcript_145478.nic	chrX	-	1871	14	ISM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	-11	13491	-11	-13191	5prime_fragment	FALSE	non_canonical	3	600	junction_13	233.713550460043	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATCAATGCCATGAAAGA	NA	False	NA	NA	False	GATAAA	-43	NA	37665084	37635641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
transcript_14548.known	chr10	+	1583	13	FSM	ENSMUSG00000025395.15	ENSMUST00000026461.8	1583	13	0	0	0	0	multi-exon	FALSE	canonical	2	393	junction_7	89.7794751970998	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGCTCGGTTCTACCC	984	False	NA	18	True	TATAAA	-20	NA	127851040	127865906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
transcript_145484.nic	chrX	-	758	2	ISM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	-11	38516	-11	-38216	5prime_fragment	FALSE	canonical	3	600	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTCAGCATGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	37665084	37660666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_37661356_37665015
transcript_145489.nic	chrX	+	864	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-157	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689297	37702303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_145490.nic	chrX	+	789	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	16	98	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	10	True	ATTAAA	-23	NA	37689470	37702401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_145494.known	chrX	+	783	6	FSM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_1	58.4486099064811	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_145495.known	chrX	-	1449	2	FSM	ENSMUSG00000048970.10	ENSMUST00000058265.8	1449	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTATTACTTTTCTGT	NA	False	NA	-2	True	ATTAAA	-18	NA	37723964	37719661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_37721001_37723854
transcript_145500.nic	chrX	-	3896	31	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	-46	19603	-46	0	5prime_fragment	FALSE	canonical	3	149	junction_12	22.2343328111179	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAGAAAGAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	41000824	40903470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_145504.nic	chrX	-	3861	30	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	-46	27377	-46	1040	5prime_fragment	FALSE	canonical	3	149	junction_11	22.2650235188487	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGAACACTGTGCCATAT	NA	False	NA	NA	False	NA	NA	NA	41000824	40911244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_145512.nic	chrX	-	2833	23	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	-46	32192	-46	-3775	5prime_fragment	FALSE	canonical	3	149	junction_4	23.7647300993345	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTGATGTAGCGAT	NA	False	NA	NA	False	AATAAA	-43	NA	41000824	40916059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_145520.nic	chrX	-	2557	22	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	-46	35702	-46	-7285	5prime_fragment	FALSE	canonical	3	149	junction_3	23.2719308704695	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATGAATGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	41000824	40919569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_145527.nic	chrX	-	1916	17	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	-46	43593	-46	-15176	5prime_fragment	FALSE	canonical	3	161	junction_4	20.2819963267919	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCCTTTCATGTGGAGCA	NA	False	NA	NA	False	NA	NA	NA	41000824	40927460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_145530.nic	chrX	-	1065	10	ISM	ENSMUSG00000037475.16	ENSMUST00000127338.8	2697	11	-46	2240	-46	1298	5prime_fragment	FALSE	canonical	3	169	junction_3	16.8310412814325	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGACAAAGATGATGAGAAAG	NA	False	NA	NA	False	AAGAAA	-2	NA	41000824	40947703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_145534.known	chrX	-	7622	39	FSM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	0	0	0	0	multi-exon	FALSE	canonical	2	149	junction_20	23.0069843664894	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTATATTGTTACTT	NA	False	NA	1	True	AATAAA	-26	NA	41000778	40883867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_40886657_40891823_40891870_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901372_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_145537.known	chrX	+	6542	8	FSM	ENSMUSG00000025860.16	ENSMUST00000115094.8	6542	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	28.7345344383332	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTATCTTCTTTGTAT	NA	False	NA	18	True	AATAAA	-14	NA	41156712	41198533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_41156934_41157233_41157360_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
transcript_145539.known	chrX	+	6670	7	FSM	ENSMUSG00000025860.16	ENSMUST00000115095.9	6670	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	35.08283847632	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTATCTTCTTTGTAT	NA	False	NA	18	True	AATAAA	-14	NA	41157274	41198533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_41157750_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
transcript_145545.known	chrX	+	5955	33	FSM	ENSMUSG00000025862.15	ENSMUST00000115072.8	5955	33	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	32.1178858854377	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGTTGTATGCTTTATC	NA	False	NA	9	True	AATAAA	-12	NA	41238288	41366052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_41238563_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41358257_41358385_41360121_41360200_41364139
transcript_145548.known	chrX	+	5825	33	FSM	ENSMUSG00000025862.15	ENSMUST00000069619.14	5825	33	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	27.0432957264827	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTATCTCTTGTAATC	NA	False	NA	19	True	AATAAA	-22	NA	41239577	41366062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_41239712_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41358257_41358385_41360121_41360200_41364139
transcript_145554.nic	chrX	+	376	3	ISM	ENSMUSG00000025862.15	ENSMUST00000069619.14	5825	33	-23	71061	-23	0	5prime_fragment	FALSE	canonical	3	102	junction_1	22.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTATCATATAACTTTT	NA	False	NA	NA	False	NA	NA	NA	41239554	41295001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_41239712_41290731_41290872_41294922
transcript_145555.known	chrX	+	294	3	FSM	ENSMUSG00000025862.15	ENSMUST00000123245.8	294	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	67.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTATCATATAACTTTT	NA	False	NA	NA	False	NA	NA	NA	41239890	41295001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_41239966_41290731_41290872_41294922
transcript_145556.known	chrX	+	6171	34	FSM	ENSMUSG00000025862.15	ENSMUST00000115073.9	6171	34	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	38.2930798352529	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTATCTCTTGTAATC	NA	False	NA	19	True	AATAAA	-22	NA	41238193	41366062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_41238563_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358385_41360121_41360200_41364139
transcript_145557.known	chrX	-	3495	2	FSM	ENSMUSG00000045284.10	ENSMUST00000115056.2	3495	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTCTGTTTTTCTTTA	NA	False	NA	-5	True	AATAAA	-40	NA	43879038	43875446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_43877171_43877267
transcript_145558.known	chrX	-	3509	2	FSM	ENSMUSG00000045284.10	ENSMUST00000060481.9	3509	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTCTGTTTTTCTTTA	NA	False	NA	-5	True	AATAAA	-40	NA	43879074	43875446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_43877171_43877289
transcript_145564.known	chrX	-	3991	24	FSM	ENSMUSG00000031099.17	ENSMUST00000101616.9	3991	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_22	6.29309340266527	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTATTTCCTGTTTTTTTG	NA	False	NA	NA	False	AATAAA	-21	NA	46981396	46898246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_46898998_46900034_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975973_46976076_46981102
transcript_145566.known	chrX	-	4798	23	FSM	ENSMUSG00000031099.17	ENSMUST00000088973.11	4798	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	6.17462817162712	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTCACTTCTTTGTTGC	NA	False	NA	NA	False	ATTAAA	-19	NA	46981429	46898509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975973_46976076_46981102
transcript_145569.known	chrX	+	5253	24	FSM	ENSMUSG00000001173.16	ENSMUST00000001202.15	5253	24	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	28.8803018275155	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGTGATCTGACTGAG	NA	False	NA	17	True	AATAAA	-18	NA	47001263	47054745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47045086_47045111_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
transcript_14557.nic	chr10	+	755	7	ISM	ENSMUSG00000025395.15	ENSMUST00000178041.8	1536	13	-12	7097	-12	765	5prime_fragment	FALSE	canonical	3	557	junction_6	40.6557362359715	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTTTGAGGAATATGCCT	968	False	NA	NA	False	ATTAAA	-3	NA	127851024	127858755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731
transcript_145575.known	chrX	-	3149	3	FSM	ENSMUSG00000037010.8	ENSMUST00000039026.8	3149	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCCCATCTGTCTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	47123730	47114022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_47116585_47117170_47117343_47123315
transcript_145576.known	chrX	+	3498	21	FSM	ENSMUSG00000037005.17	ENSMUST00000077775.11	3498	21	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_11	7.3109506905737	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTCTGGTTTTGC	NA	False	NA	NA	False	AAAACA	-12	NA	47197601	47225858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211_47207359_47210677_47210780_47211405_47211488_47211764_47211961_47212715_47212806_47213492_47213603_47214221_47214300_47215745_47215818_47217601_47217663_47218923_47218994_47219555_47219661_47220024_47220085_47220774_47220852_47223961_47224052_47224611
transcript_145578.known	chrX	+	2677	8	FSM	ENSMUSG00000031101.7	ENSMUST00000033427.7	2677	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	1.30930734141595	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCGTCGCCTGTTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	47235312	47250442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_47235595_47243402_47243499_47243852_47244000_47246295_47246438_47247609_47247759_47247918_47248129_47248280_47248432_47248942
transcript_145581.known	chrX	-	2982	10	FSM	ENSMUSG00000036985.13	ENSMUST00000037960.11	2982	10	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	12.3107902084129	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCCTGCCTCCTCCTTCC	NA	False	NA	-2	True	ATTAAA	-16	NA	47297564	47260845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_47262519_47266916_47267014_47267385_47267490_47270123_47270227_47270975_47271025_47271897_47272036_47280097_47280257_47283436_47283598_47295544_47295835_47297356
transcript_145589.known	chrX	+	2507	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345738	47371330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
transcript_14559.nic	chr10	+	730	6	ISM	ENSMUSG00000025395.15	ENSMUST00000133285.8	3128	11	-40	8135	-12	-391	5prime_fragment	FALSE	canonical	3	618	junction_1	24.1876001289917	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGTTGGGAAAGACCCC	968	False	NA	NA	False	AAAAAG	-38	NA	127851024	127857599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541
transcript_145595.nic	chrX	+	1549	12	ISM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-38	5144	-38	4225	5prime_fragment	FALSE	canonical	3	320	junction_8	29.8140241003768	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCAGCAAAGGCTGTTG	NA	False	NA	NA	False	AAGAAA	-39	NA	47345700	47366186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098
transcript_145598.nic	chrX	+	1460	11	ISM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-38	7266	-38	2103	5prime_fragment	FALSE	canonical	3	320	junction_8	31.2096139034112	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGAGCTGGGAGGAGGACA	NA	False	NA	NA	False	AAGAAA	-6	NA	47345700	47364064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677
transcript_145600.nnic	chrX	+	1462	10	NIC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_7	130.820015835536	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345700	47371330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47367243_47367438_47367544_47367645_47370938
transcript_145602.nic	chrX	+	975	9	ISM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-38	8660	-38	709	5prime_fragment	FALSE	canonical	3	320	junction_8	33.9484903935359	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAAAGCCAGAATGATG	NA	False	NA	NA	False	NA	NA	NA	47345700	47362670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566
transcript_145603.nic	chrX	+	839	8	ISM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-38	9369	-38	0	5prime_fragment	FALSE	canonical	3	338	junction_6	30.9271692192863	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTCGAAGAATGAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	47345700	47361961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898
transcript_145606.known	chrX	+	2138	7	FSM	ENSMUSG00000063785.13	ENSMUST00000125966.8	2138	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	135.426999605774	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATTTGAGTTCTGTTTT	NA	False	NA	NA	False	GATAAA	-41	NA	47345773	47356846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47355291
transcript_145608.nic	chrX	+	2351	12	NIC	ENSMUSG00000036959.16	novel	7360	14	NA	NA	-61	-375	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	9.12991631401003	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATTAGTGACTGGATTC	NA	False	NA	19	True	NA	NA	NA	47432585	47495211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_47432767_47450409_47450540_47463899_47464066_47465873_47465955_47467820_47468208_47472798_47473023_47477952_47478175_47480747_47480915_47482030_47482177_47489437_47489516_47490635_47490787_47494793
transcript_145613.known	chrX	-	6088	9	FSM	ENSMUSG00000031103.13	ENSMUST00000114958.8	6088	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	6.29359793758705	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTTCAGATTCCAATTGT	NA	False	NA	2	True	NA	NA	NA	47543046	47499922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_47504324_47505523_47505902_47506747_47506941_47507031_47507116_47507884_47508077_47509152_47509246_47509580_47509753_47512954_47513232_47542748
transcript_145621.known	chrX	-	2221	16	FSM	ENSMUSG00000036932.15	ENSMUST00000114945.9	2221	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	394.039704711199	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602436	47563820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459_47592591_47602112
transcript_145622.known	chrX	-	2237	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_9	82.1482129378898	1548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602440	47563820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
transcript_14564.known	chr10	+	885	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	0	0	0	0	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	4161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4912	False	NA	0	True	AATAAA	-24	NA	127871443	127884502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
transcript_145646.known	chrX	+	1158	2	FSM	ENSMUSG00000031104.3	ENSMUST00000033430.3	1158	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACGTGGCTTTGTGTCTT	NA	False	NA	6	True	AATAAA	-14	NA	47608161	47619109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_47608736_47618525
transcript_145649.known	chrX	-	4045	20	FSM	ENSMUSG00000036916.14	ENSMUST00000072292.12	4045	20	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_17	15.8598431908636	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTGCATCATCTAATACG	NA	False	NA	44	True	AATAAA	-22	NA	47683329	47630501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47683240
transcript_145654.known	chrX	-	3863	18	FSM	ENSMUSG00000036916.14	ENSMUST00000114940.9	3863	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	21.8484873935035	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTGCATCATCTAATAC	NA	False	NA	43	True	AATAAA	-21	NA	47680638	47630502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549
transcript_145655.nic	chrX	+	1524	11	NIC	ENSMUSG00000031105.17	novel	1760	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	33.2180673730426	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712289	47751171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_47712386_47712550_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
transcript_145656.known	chrX	+	1582	11	FSM	ENSMUSG00000031105.17	ENSMUST00000114936.8	1582	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	43.3798340245787	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712641	47751171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_47712706_47712838_47713084_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
transcript_145657.known	chrX	+	724	7	FSM	ENSMUSG00000031105.17	ENSMUST00000153047.8	724	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	17.5665401639974	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGAATTATGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	47712625	47740931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806
transcript_145659.known	chrX	+	1747	6	FSM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	50.9768574943572	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGCATTTGGTCCACTCA	NA	False	NA	NA	False	NA	NA	NA	47783880	47799600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798452
transcript_145661.nic	chrX	+	620	5	ISM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	-28	1657	-28	0	5prime_fragment	FALSE	canonical	3	254	junction_1	56.9753236059261	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGGTAGCATATTAAA	NA	False	NA	-5	True	AAAAAG	-4	NA	47783852	47797943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766
transcript_145665.known	chrX	-	2623	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114911.8	2623	16	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	15.9351463403663	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAACCCATCTGTGTCTTC	NA	False	NA	NA	False	AGTAAA	-10	NA	48377119	48099893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48112003_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
transcript_145666.known	chrX	-	3226	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114918.9	3226	16	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	10.7695042700313	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
transcript_145667.known	chrX	-	3936	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114914.8	3936	16	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_14	13.255774423079	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAACCTTGCTTATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	48377089	48098583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
transcript_145671.known	chrX	-	3167	15	FSM	ENSMUSG00000031109.17	ENSMUST00000114912.8	3167	15	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_13	14.647560220329	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_48100512_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
transcript_145688.known	chrX	-	4421	20	FSM	ENSMUSG00000031111.17	ENSMUST00000033442.14	4421	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	2.03569259008565	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTAGTGGTCTTTTTT	NA	False	NA	NA	False	AATAAA	-32	NA	48886626	48871412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_48871830_48871976_48872101_48872488_48872768_48872898_48873187_48873382_48873671_48873848_48874137_48874864_48875153_48875735_48876015_48876234_48876526_48876909_48876943_48877024_48877096_48878958_48879080_48879391_48879644_48880163_48880458_48880691_48880977_48882780_48883069_48883368_48883651_48883999_48884027_48884155_48884285_48886529
transcript_145707.nic	chrX	-	3255	2	ISM	ENSMUSG00000085396.8	ENSMUST00000148530.3	716	6	-30	12619	-12	-12619	5prime_fragment	FALSE	canonical	3	63	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCGGTACCATTTAAAAACA	NA	False	NA	NA	False	AAAACA	-44	NA	49724210	49717006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_49719873_49723821
transcript_145708.known	chrX	+	3639	12	FSM	ENSMUSG00000031112.11	ENSMUST00000033444.11	3639	12	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_11	5.29618605950164	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCCTCGATGTTTGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	49929923	49981974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_49930424_49930555_49930713_49959132_49959364_49968365_49968423_49974465_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
transcript_145709.nnic	chrX	-	3891	4	NNC	ENSMUSG00000050029.8	novel	3545	3	NA	NA	-839	-378	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_3	34.5671648951558	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGGCTTGTCTCTTTAAT	NA	False	NA	-5	True	AATAAA	-17	NA	50107734	50093166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_50095628_50103847_50104161_50106502_50107328_50107442
transcript_145711.known	chrX	-	3545	3	FSM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAACCAGTTATCATTTG	NA	False	NA	NA	False	ATTAAA	-25	NA	50106895	50092788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_50095628_50103847_50104161_50106502
transcript_145714.known	chrX	-	1454	4	FSM	ENSMUSG00000031118.9	ENSMUST00000033449.8	1454	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	37.249906785864	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061649	51057571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_51058747_51059091_51059163_51059786_51059953_51061607
transcript_145715.nnic	chrX	-	1413	4	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	3	60	junction_2	10.4029910228848	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061680	51057571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_51058747_51059091_51059163_51059858_51059953_51061607
transcript_145716.nic	chrX	-	2109	3	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-31	0	intron_retention	FALSE	canonical	3	81	junction_2	1	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061680	51057571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_51058747_51059091_51059953_51061607
transcript_145720.known	chrX	-	2651	9	FSM	ENSMUSG00000031119.5	ENSMUST00000033450.3	2651	9	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	29.8493613834534	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCTGGAAAATTTCCATT	NA	False	NA	-19	True	ATTAAA	-15	NA	51254129	51141897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_51142604_51142693_51142870_51143322_51143460_51145536_51145684_51145777_51145909_51151734_51151901_51163170_51163563_51180518_51180678_51253492
transcript_145726.known	chrX	-	2216	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	390	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGGTCCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-17	NA	51702798	51361302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
transcript_145729.known	chrX	-	408	1	FSM	ENSMUSG00000083621.2	ENSMUST00000119571.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3031	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATGCCATATTTTCA	NA	False	NA	NA	False	AAAACA	-19	NA	51861626	51861218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_51861200_51861600
transcript_145730.known	chrX	+	1536	2	FSM	ENSMUSG00000073207.2	ENSMUST00000101588.2	1536	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATATGCCTGTGATTC	NA	False	NA	NA	False	AATAAA	-23	NA	51880076	51888345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_51880203_51886935
transcript_145731.known	chrX	+	882	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	51987464	51988346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_51987500_51988300
transcript_145732.known	chrX	+	4350	11	FSM	ENSMUSG00000025626.17	ENSMUST00000078944.13	4350	11	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_10	29.4423164849507	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTGTCTGCTTTGTAA	NA	False	NA	17	True	AATAAA	-17	NA	52001142	52045820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
transcript_145736.nic	chrX	+	725	6	ISM	ENSMUSG00000025626.17	ENSMUST00000101587.10	3639	9	-53	8210	-24	-326	5prime_fragment	FALSE	canonical	3	221	junction_2	24.9751876869825	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCGCAAAGGAAGACCGAGA	NA	False	NA	NA	False	AAGAAA	-2	NA	52001118	52029167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101
transcript_145740.known	chrX	+	1289	9	FSM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	0	0	0	0	multi-exon	FALSE	canonical	3	2155	junction_4	129.05328356923	975	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTTTTTGAATTCTTT	NA	False	NA	12	True	AATAAA	-16	NA	52077013	52110536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105223_52105307_52108981_52109029_52109199_52109277_52109943
transcript_145747.nnic	chrX	-	3587	10	NNC	ENSMUSG00000036022.16	novel	2038	10	NA	NA	-46	-2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.833271190576	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGATCGTAAAAGTCTGC	NA	False	NA	-15	True	AATAAA	-22	NA	52358728	52332303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_52334249_52335026_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
transcript_145748.known	chrX	-	3536	9	FSM	ENSMUSG00000036022.16	ENSMUST00000114838.8	3536	9	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	8.54034542626936	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATCGTAAAAGTCTGCCT	NA	False	NA	-13	True	AATAAA	-24	NA	52357897	52332301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
transcript_14575.nic	chr10	+	432	5	ISM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	-27	916	-27	-916	5prime_fragment	FALSE	canonical	3	9741	junction_1	1057.40516714266	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAAAATATCCTCTTTGT	4885	False	NA	NA	False	NA	NA	NA	127871416	127883586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526
transcript_145755.known	chrX	-	1763	6	FSM	ENSMUSG00000023074.12	ENSMUST00000023836.4	1763	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	37.7804182083788	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGCCCCCT	NA	False	NA	NA	False	AATAAA	-7	NA	52459379	52433897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_52434867_52436580_52436743_52444529_52444751_52446286_52446363_52446450_52446705_52459298
transcript_145759.known	chrX	-	1232	1	FSM	ENSMUSG00000067924.5	ENSMUST00000088778.5	1232	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAGGAAATGGAGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	52672375	52671143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_52671100_52672400
transcript_145762.known	chrX	+	1427	5	FSM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_4	18.2397231338636	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTTACCTGTAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	52726792	52740408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_52727016_52729333_52729516_52735693_52735827_52738241_52738355_52739632
transcript_14577.known	chr10	+	2000	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGTGTCACCTTGTTT	846	False	NA	39	True	AATAAA	-40	NA	127894822	127913141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
transcript_145770.known	chrX	-	1224	9	FSM	ENSMUSG00000054727.3	ENSMUST00000067940.3	1224	9	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_5	153.190241203544	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759798	52744867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
transcript_145777.nic	chrX	-	3440	8	NIC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-143	0	intron_retention	FALSE	canonical	3	1225	junction_3	142.325008917145	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759941	52744867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52752016_52752989_52753054_52753476_52753824_52759728
transcript_145778.nic	chrX	-	970	8	ISM	ENSMUSG00000054727.3	ENSMUST00000067940.3	1224	9	-46	465	-46	-465	5prime_fragment	FALSE	canonical	3	1101	junction_4	113.78353957208	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAGAGAATCTGTAAGT	NA	False	NA	NA	False	AATGAA	-35	NA	52759844	52745332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
transcript_145785.known	chrX	-	984	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
transcript_145786.known	chrX	-	1032	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
transcript_145797.known	chrX	+	1022	8	FSM	ENSMUSG00000031125.3	ENSMUST00000033458.3	1022	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.2819544532076	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181931	55198858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_55181986_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
transcript_1458.known	chr1	-	5052	30	FSM	ENSMUSG00000018417.15	ENSMUST00000046390.14	5052	30	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	59.0883173807801	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCGAAGTCTTCGTGTT	NA	False	NA	16	True	GATAAA	-5	NA	51955230	51788923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_14580.known	chr10	+	1559	7	FSM	ENSMUSG00000071072.13	ENSMUST00000084771.3	1559	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	1337.80347543609	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTGGAAGATTTCTTGG	903	False	NA	-1	True	TTTAAA	-22	NA	127894879	127912847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127910090_127910154_127911206_127911232_127911935
transcript_145800.known	chrX	-	951	8	FSM	ENSMUSG00000073177.9	ENSMUST00000101561.8	951	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.42165358301205	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATTTTTTGCAATGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	55258241	55235186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55246943_55246979_55247366_55247437_55248032_55248151_55258173
transcript_145801.known	chrX	+	3738	5	FSM	ENSMUSG00000073176.5	ENSMUST00000101560.4	3738	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	8.6421930087218	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTCTGATTCTTTTA	NA	False	NA	6	True	AATAAA	-16	NA	55391759	55411034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_55391800_55393642_55394089_55398822_55399028_55407826_55407941_55408101
transcript_145808.known	chrX	+	2393	2	FSM	ENSMUSG00000054850.5	ENSMUST00000068106.5	2393	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATCCTGGCTGCCTCCTG	NA	False	NA	14	True	AAGAAA	-15	NA	55419945	55423159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_55420569_55421389
transcript_145810.nic	chrX	+	3924	18	NIC	ENSMUSG00000035967.16	novel	3766	17	NA	NA	-27	0	intron_retention	FALSE	canonical	3	44	junction_10	16.0656094259874	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTAGGTGTATGTC	NA	False	NA	15	True	AATAAA	-26	NA	55500189	55553199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
transcript_145813.nic	chrX	+	4059	17	NIC	ENSMUSG00000035967.16	novel	3766	17	NA	NA	-30	0	intron_retention	FALSE	canonical	3	44	junction_9	15.57040461902	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTAGGTGTATGTC	NA	False	NA	15	True	AATAAA	-26	NA	55500186	55553199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
transcript_145814.known	chrX	+	3766	17	FSM	ENSMUSG00000035967.16	ENSMUST00000039374.9	3766	17	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	18.8414436814168	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTAGGTGTATGTC	NA	False	NA	15	True	AATAAA	-26	NA	55500236	55553199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
transcript_145820.known	chrX	-	4234	4	FSM	ENSMUSG00000061273.4	ENSMUST00000059899.3	4234	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	4.64279609239471	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTGTTTGGTAGTGG	NA	False	NA	-7	True	AATAAA	-14	NA	55643429	55630871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_55634664_55636437_55636542_55640749_55640803_55643144
transcript_145823.nic	chrX	+	2366	17	NIC	ENSMUSG00000060681.16	novel	4976	16	NA	NA	-3	378	combination_of_known_junctions	TRUE	canonical	0	0	junction_8	37.5097903886439	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTGAGTACCGAGTTC	NA	False	NA	25	True	CATAAA	-27	NA	55655131	55707119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_55655181_55655322_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
transcript_145824.nic	chrX	+	4436	17	NIC	ENSMUSG00000060681.16	novel	4976	16	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	37.5097903886439	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATTCACTGTTAT	NA	False	NA	13	True	ATTAAA	-17	NA	55655131	55709189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_55655181_55655322_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
transcript_145826.known	chrX	+	4976	16	FSM	ENSMUSG00000060681.16	ENSMUST00000077741.12	4976	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	32.6612240363945	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCTCTTTGTACATGAG	NA	False	NA	NA	False	ATTAAA	-19	NA	55655134	55709590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
transcript_145830.known	chrX	+	1203	7	FSM	ENSMUSG00000023092.17	ENSMUST00000116596.8	1203	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	52.0173582139227	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACAAAACCTTAGACTG	NA	False	NA	NA	False	NA	NA	NA	55777488	55837595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_55777529_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55837203
transcript_145831.known	chrX	+	2356	7	FSM	ENSMUSG00000023092.17	ENSMUST00000023854.10	2356	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_5	4.78423336480244	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTCCTGTCTTTTTATTC	NA	False	NA	12	True	AATAAA	-18	NA	55777146	55838706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55837203
transcript_145833.known	chrX	+	2810	10	FSM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	40.9980427114861	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56098974	56112543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
transcript_145841.nic	chrX	+	1846	9	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	249	903	-34	-903	3prime_fragment	FALSE	canonical	3	455	junction_5	31.3996417177012	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTGTTAAAAAAGATGTTG	NA	False	NA	NA	False	AATAGA	-7	NA	56099223	56111640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
transcript_145843.nic	chrX	+	2773	9	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	225	0	-58	0	3prime_fragment	FALSE	canonical	3	455	junction_5	31.3996417177012	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56099199	56112543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
transcript_145845.known	chrX	+	1128	6	FSM	ENSMUSG00000067873.12	ENSMUST00000114751.9	1128	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_5	193.065170344109	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCACTGGCTCACTTAT	NA	False	NA	25	True	NA	NA	NA	56098942	56102566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56102250
transcript_145846.nic	chrX	+	960	6	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	-141	8259	-109	1718	5prime_fragment	FALSE	canonical	3	407	junction_1	51.5387233058794	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAATTAGAGGCTACAA	NA	False	NA	NA	False	ATTAAA	-14	NA	56098833	56104284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245
transcript_145847.nic	chrX	+	965	6	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	-72	8185	-40	1792	5prime_fragment	FALSE	canonical	3	407	junction_1	51.5387233058794	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAGAAGTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	56098902	56104358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245
transcript_145857.known	chrX	-	2139	10	FSM	ENSMUSG00000031134.17	ENSMUST00000140384.8	2139	10	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_8	6.66296193358442	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAAAATTAGCCTT	NA	False	NA	NA	False	AATATA	-28	NA	56438341	56428889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
transcript_145861.known	chrX	-	2108	9	FSM	ENSMUSG00000031134.17	ENSMUST00000114726.8	2108	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	24.9871842151132	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCTGAAGCTGCAAAC	NA	False	NA	-16	True	AATAAA	-15	NA	56438396	56431721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437062_56438211
transcript_145862.known	chrX	+	2156	17	FSM	ENSMUSG00000079584.3	ENSMUST00000114725.3	2156	17	0	0	0	0	multi-exon	FALSE	canonical	1	199	junction_7	106.775300719548	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAACCTCCCTGTCTGGC	NA	False	NA	9	True	TATAAA	-2	NA	56454513	56534127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468737_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
transcript_145863.known	chrX	+	3949	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	9.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTATAACTTTTTTTG	9500	False	NA	12	True	AATAAA	-18	NA	57076002	57081919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_57077598_57078721_57078886_57079729
transcript_145866.known	chrX	+	1951	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088629.4	1951	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	99.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGATTATTGTTTTAT	9867	False	NA	NA	False	NA	NA	NA	57076369	57087096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_57077598_57078721_57078886_57086537
transcript_145871.known	chrX	+	1572	2	FSM	ENSMUSG00000046180.12	ENSMUST00000062542.5	1572	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCAGCAGTGTTTGTTC	NA	False	NA	13	True	AATAAA	-18	NA	57956820	57965664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_57956922_57964193
transcript_145872.known	chrX	-	2499	5	FSM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	5.62916512459885	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACTTCAATGTGTGTT	NA	False	NA	NA	False	AATAAA	-25	NA	58179796	58107504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236
transcript_145881.nnic	chrX	-	3982	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-207	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_28	106.155564274939	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATACTCTGGTGTTCGTGT	NA	False	NA	-5	True	AATAAA	-26	NA	59224656	59101318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941_59224048_59224496
transcript_145888.known	chrX	-	4227	28	FSM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_27	54.2283947104	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59224449	59101315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
transcript_145899.known	chrX	-	3671	25	FSM	ENSMUSG00000031139.17	ENSMUST00000101531.10	3671	25	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_24	117.379696095856	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59193060	59101315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59192833
transcript_145915.nic	chrX	-	3387	15	ISM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	-236	56491	-236	-56488	5prime_fragment	FALSE	canonical	3	390	junction_14	50.407775963149	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATCTGTTCTACTTTGT	NA	False	NA	-3	True	NA	NA	NA	59224685	59157806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
transcript_145922.nic	chrX	-	1947	10	ISM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	-446	71098	-446	-71095	5prime_fragment	FALSE	canonical	3	390	junction_9	49.6150614328719	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTTAAAAAACTAGAGATC	NA	False	NA	NA	False	AGTAAA	-6	NA	59224895	59172413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
transcript_145927.known	chrX	-	6044	30	FSM	ENSMUSG00000062949.14	ENSMUST00000101527.3	6044	30	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_14	11.609582331096	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAATGGGTATTCGAGTG	NA	False	NA	-10	True	AATAAA	-11	NA	59449172	59268652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_59271154_59274507_59274613_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335253_59335452_59335929_59336081_59337279_59337362_59337678_59337744_59338966_59339018_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995
transcript_145943.known	chrX	+	1459	1	FSM	ENSMUSG00000057615.6	ENSMUST00000075983.6	1459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTGTCTTTTCATGG	NA	False	NA	13	True	AATAAA	-26	NA	60753102	60754561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_60753100_60754600
transcript_145944.known	chrX	+	1970	4	FSM	ENSMUSG00000045330.9	ENSMUST00000051414.2	1970	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2.62466929133727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAATCTTTTCTGTTTGG	NA	False	NA	NA	False	AATAAA	-21	NA	61330747	61335684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_61330842_61332956_61333046_61333767_61333841_61333970
transcript_145945.known	chrX	+	1931	4	FSM	ENSMUSG00000045330.9	ENSMUST00000178085.8	1931	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.94392028877595	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAATCTTTTCTGTTTGG	NA	False	NA	NA	False	AATAAA	-21	NA	61327104	61335684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_61327160_61332956_61333046_61333767_61333841_61333970
transcript_145950.known	chrX	+	1649	4	FSM	ENSMUSG00000031179.15	ENSMUST00000033522.15	1649	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.69967317119759	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTTTAGTCTCCCGTT	NA	False	NA	NA	False	AATAAA	-20	NA	63217153	63222384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_63217298_63219533_63219620_63220397_63220469_63221036
transcript_145951.known	chrX	+	854	3	FSM	ENSMUSG00000031181.3	ENSMUST00000033524.3	854	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTGAGTTACTGTTTTTA	NA	False	NA	NA	False	AAAACA	-1	NA	64091249	64092620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_64091683_64092028_64092158_64092328
transcript_145954.known	chrX	+	4409	17	FSM	ENSMUSG00000000838.18	ENSMUST00000088546.12	4409	17	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_14	131.607237049298	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722146	67761569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
transcript_145959.nnic	chrX	+	4342	17	NNC	ENSMUSG00000000838.18	novel	4409	17	NA	NA	-31	-62	at_least_one_novel_splicesite	FALSE	canonical	3	169	junction_14	180.447880286802	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTTATCTTATCTAGA	NA	False	NA	36	True	ATTAAA	-17	NA	67722115	67761507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755872_67756020_67756846_67756930_67759170
transcript_145960.nnic	chrX	+	4404	17	NNC	ENSMUSG00000000838.18	novel	4409	17	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	3	169	junction_14	180.447880286802	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722115	67761569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755872_67756020_67756846_67756930_67759170
transcript_145961.known	chrX	+	4058	17	FSM	ENSMUSG00000000838.18	ENSMUST00000114653.2	4058	17	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_14	173.862182759075	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722422	67761569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
transcript_145967.known	chrX	+	4076	16	FSM	ENSMUSG00000000838.18	ENSMUST00000114657.9	4076	16	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_11	161.476190195335	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722416	67761569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
transcript_145975.nic	chrX	+	4240	16	Fusion	ENSMUSG00000000838.18_ENSMUSG00002075986.1	novel	4058	17	NA	NA	25	-62	multi-exon	FALSE	canonical	3	204	junction_13	199.338461472497	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTTATCTTATCTAGA	NA	False	NA	36	True	ATTAAA	-17	NA	67722115	67761507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
transcript_145976.nic	chrX	+	4302	16	Fusion	ENSMUSG00000000838.18_ENSMUSG00002075986.1	novel	4058	17	NA	NA	25	0	multi-exon	FALSE	canonical	3	204	junction_13	199.338461472497	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722115	67761569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
transcript_14598.known	chr10	+	1916	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	0	0	0	0	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	10926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGGGCCTTGTGTTTC	NA	False	NA	11	True	ATTAAA	-22	NA	127919141	127926260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
transcript_145981.known	chrX	+	2870	11	FSM	ENSMUSG00000000838.18	ENSMUST00000146177.8	2870	11	0	0	0	0	multi-exon	FALSE	canonical	3	696	junction_8	82.2352722376475	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAGAAAATCTTTAC	NA	False	NA	NA	False	NA	NA	NA	67722187	67750499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854
transcript_145982.nic	chrX	+	1206	10	ISM	ENSMUSG00000000838.18	ENSMUST00000146177.8	2870	11	-72	3212	-31	-2509	5prime_fragment	FALSE	canonical	3	696	junction_8	81.8046453448703	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAAGCTGATTCAAGAGA	NA	False	NA	NA	False	NA	NA	NA	67722115	67747287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268
transcript_145983.nic	chrX	+	1219	10	ISM	ENSMUSG00000000838.18	ENSMUST00000146177.8	2870	11	0	3127	0	-2424	5prime_fragment	FALSE	canonical	3	696	junction_8	81.8046453448703	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGTATGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	67722187	67747372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268
transcript_145984.nic	chrX	+	1115	9	ISM	ENSMUSG00000000838.18	ENSMUST00000146177.8	2870	11	0	6473	0	2085	5prime_fragment	FALSE	canonical	3	696	junction_8	79.8279399709149	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAGTAAAAAATAACTTTA	NA	False	NA	NA	False	NA	NA	NA	67722187	67744026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947
transcript_145991.nnic	chrX	+	3035	7	NIC	ENSMUSG00000000838.18	novel	4058	17	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	325.924326595403	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722247	67761569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67755911_67756020_67756846_67756930_67759170
transcript_145993.known	chrX	+	4257	16	FSM	ENSMUSG00000000838.18	ENSMUST00000114656.8	4257	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	244.572188843203	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722229	67761569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747274_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
transcript_145994.known	chrX	+	842	6	FSM	ENSMUSG00000062170.13	ENSMUST00000071848.7	842	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	319.056484027515	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805539	67848173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_67805838_67807537_67807616_67812561_67812700_67815650_67815748_67847210_67847300_67848031
transcript_145995.known	chrX	+	799	5	FSM	ENSMUSG00000062170.13	ENSMUST00000069731.12	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_2	146.787899705664	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805444	67848173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_67805838_67807537_67807616_67815650_67815748_67847210_67847300_67848031
transcript_145996.nic	chrX	+	605	4	ISM	ENSMUSG00000062170.13	ENSMUST00000069731.12	799	5	6	920	6	-920	5prime_fragment	FALSE	canonical	3	455	junction_2	145.164274760241	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAGGGAAGAAGCCTAA	NA	False	NA	14	True	AAGAAA	-7	NA	67805450	67847253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_67805838_67807537_67807616_67815650_67815748_67847210
transcript_145998.known	chrX	+	679	4	FSM	ENSMUSG00000062170.13	ENSMUST00000114647.8	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	201.191451110627	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805486	67848173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_67805838_67815650_67815748_67847210_67847300_67848031
transcript_146000.known	chrX	+	4226	1	FSM	ENSMUSG00000071748.3	ENSMUST00000096420.3	4226	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATACA	NA	False	NA	NA	False	ATTAAA	-17	NA	67864698	67868924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_67864700_67868900
transcript_146001.known	chrX	-	750	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	648	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	68649851	68649101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_68649100_68649900
transcript_146002.known	chrX	+	525	2	FSM	ENSMUSG00000059690.2	ENSMUST00000075654.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCCTGTCTCTGTGTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	68988905	68989584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_68989057_68989210
transcript_146007.known	chrX	+	1094	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429482	69433023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_69429758_69431499_69431773_69432477
transcript_146013.nic	chrX	-	2377	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	74.9288551449529	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520808	69503358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510810_69513723_69513901_69520583
transcript_146014.known	chrX	-	1307	7	FSM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_5	21.8587638158144	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCTGAAGCCTCGTTT	NA	False	NA	NA	False	NA	NA	NA	69520786	69504564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69513723_69513901_69520583
transcript_146016.nnic	chrX	-	2336	6	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_5	86.1519587705352	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69520583
transcript_146018.known	chrX	-	2429	6	FSM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	81.8300678235085	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510968_69513723_69513901_69520583
transcript_146022.known	chrX	+	3316	15	FSM	ENSMUSG00000031337.17	ENSMUST00000033700.12	3316	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	89.0701683952556	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATATATTAACTAAA	NA	False	NA	-14	True	AATAAA	-18	NA	70258644	70358871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339954_70343171_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
transcript_146023.known	chrX	+	3338	15	FSM	ENSMUSG00000031337.17	ENSMUST00000114617.2	3338	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	112.146496756225	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATATATTAACTAAA	NA	False	NA	-14	True	AATAAA	-18	NA	70258687	70358871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_70258754_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339954_70343171_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
transcript_146025.known	chrX	+	4111	14	FSM	ENSMUSG00000031337.17	ENSMUST00000156452.8	4111	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	92.2693510115611	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGGAAGCAAAGAGAAAAC	NA	False	NA	NA	False	AAAAAG	-4	NA	70258664	70353917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339954_70343171_70343381_70345339_70345433_70346106_70346221_70351305
transcript_146036.known	chrX	+	4634	15	FSM	ENSMUSG00000015214.15	ENSMUST00000015358.8	4634	15	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_13	10.0440356959354	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGTTGTCTCTGTGTTT	NA	False	NA	11	True	ACTAAA	-24	NA	70408365	70462802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_70408679_70413404_70413511_70426805_70426882_70431828_70431924_70432258_70432367_70435295_70435398_70436121_70436206_70436901_70437052_70437882_70438072_70444146_70444333_70445333_70445541_70448477_70448571_70454338_70454453_70455810_70455988_70460168
transcript_146045.known	chrX	-	3600	10	FSM	ENSMUSG00000035776.15	ENSMUST00000037391.12	3600	10	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	6.51683479938452	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGATGTGATCTGTCT	NA	False	NA	1	True	NA	NA	NA	70536455	70463665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70493544_70493614_70494216_70494280_70536127
transcript_146047.known	chrX	-	3327	9	FSM	ENSMUSG00000035776.15	ENSMUST00000080035.11	3327	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	17.0399347123162	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGATGTGATCTGTCT	NA	False	NA	1	True	NA	NA	NA	70536251	70463665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70494216_70494280_70536127
transcript_146048.known	chrX	+	1544	5	FSM	ENSMUSG00000015217.12	ENSMUST00000015361.11	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	352.483687565822	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599546	70604282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_70599615_70601662_70601814_70602038_70602179_70602703_70602879_70603272
transcript_146050.known	chrX	+	1743	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	303.596360320739	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599533	70604282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
transcript_146054.known	chrX	+	1728	5	FSM	ENSMUSG00000015217.12	ENSMUST00000088874.10	1728	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	352.060630431748	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599595	70604282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_70599844_70601658_70601814_70602038_70602179_70602703_70602879_70603272
transcript_146057.known	chrX	+	4195	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	56.5	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGCTGTGTCCTCATTCG	NA	False	NA	16	True	ATTAAA	-20	NA	70860363	70868312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_70860547_70863673_70863784_70864410
transcript_146064.known	chrX	-	1821	4	FSM	ENSMUSG00000043453.6	ENSMUST00000088481.5	1821	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACATGCTCCAAATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	71430464	71425475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_71427050_71427946_71428036_71428780_71428874_71430399
transcript_146065.known	chrX	-	1286	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	0	0	0	0	multi-exon	TRUE	canonical	3	590	junction_4	36.4862987983161	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTGTGGATTTTTACA	NA	False	NA	-2	True	CATAAA	-17	NA	71962017	71957137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
transcript_146068.nic	chrX	-	273	3	ISM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	27	2819	27	-1443	5prime_fragment	FALSE	canonical	3	590	junction_2	47	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAGAAAATGATAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	71961990	71959956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_71960000_71960293_71960453_71961919
transcript_146071.known	chrX	+	2168	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_6	28.7537042866494	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTTGTGTTGCTGGCT	NA	False	NA	NA	False	AATAAA	-6	NA	71962162	72002120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
transcript_146077.known	chrX	+	3533	19	FSM	ENSMUSG00000031351.16	ENSMUST00000114546.9	3533	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	16.5279411756629	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCGTGTGTATGTGTGCAC	NA	False	NA	45	True	AATAAA	-45	NA	72030965	72075149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045013_72045053_72046180_72046265_72046978_72047066_72056045_72056235_72059344_72059456_72060300_72060382_72061979_72062049_72064473_72064577_72072450_72072550_72073278
transcript_146081.nnic	chrX	+	3495	18	NIC	ENSMUSG00000031351.16	novel	3557	19	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	17.8703520102112	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCGTGTGTATGTGTGCAC	NA	False	NA	45	True	AATAAA	-45	NA	72030940	72075149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_72031126_72040640_72040719_72040887_72041012_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978_72047066_72056045_72056235_72059344_72059456_72060300_72060382_72061979_72062049_72064473_72064577_72072450_72072550_72073278
transcript_146085.nnic	chrX	-	2716	5	NNC	ENSMUSG00000050424.10	novel	1280	2	NA	NA	-2709	0	at_least_one_novel_splicesite	FALSE	canonical	1	35	junction_1	20.9568008054665	248	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTATGTTCTTTCTGGC	NA	False	NA	-7	True	AATAAA	-14	NA	72083418	72077593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_72077934_72078769_72080775_72080892_72080952_72081548_72081672_72083229
transcript_146088.nnic	chrX	-	3427	4	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2597	-13	intron_retention	FALSE	canonical	3	77	junction_3	4.18993502999218	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGAATGTTCTGGCTA	NA	False	NA	-20	True	AATAAA	-1	NA	72083306	72077606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_72080775_72080892_72080952_72081548_72081672_72083229
transcript_146090.nnic	chrX	-	1229	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_8	86.1506674379253	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126127	72117950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125964
transcript_146091.known	chrX	-	1162	9	FSM	ENSMUSG00000079845.9	ENSMUST00000078775.13	1162	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	89.7743699504486	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126084	72117950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125988
transcript_146099.known	chrX	-	1584	9	FSM	ENSMUSG00000057836.13	ENSMUST00000114524.9	1584	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	496.010190797528	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72140623	72129898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
transcript_146100.known	chrX	-	1645	9	FSM	ENSMUSG00000057836.13	ENSMUST00000074619.6	1645	9	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_7	340.598531081683	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-7	True	AATAAA	-16	NA	72140701	72129900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
transcript_146112.known	chrX	-	3783	7	FSM	ENSMUSG00000057836.13	ENSMUST00000172709.8	3783	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	560.301406982587	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72140629	72129898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72136911_72137788_72137859_72138551_72138689_72140586
transcript_146116.known	chrX	-	360	2	FSM	ENSMUSG00000057836.13	ENSMUST00000174162.2	360	2	0	0	0	0	multi-exon	FALSE	canonical	3	1129	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTGTGTGGACATTT	NA	False	NA	NA	False	NA	NA	NA	72140665	72138407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72138689_72140586
transcript_146117.known	chrX	-	1650	9	FSM	ENSMUSG00000058328.14	ENSMUST00000078574.12	1650	9	0	0	0	0	multi-exon	TRUE	canonical	3	269	junction_2	77.2438306598009	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72161308	72151240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
transcript_146119.nic	chrX	-	1135	9	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-35	301	combination_of_known_junctions	FALSE	canonical	3	112	junction_8	115.823141038395	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTGCATGCTTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	72161343	72151713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
transcript_146121.nic	chrX	-	1106	8	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-28	301	combination_of_known_junctions	FALSE	canonical	3	293	junction_4	76.0110088696878	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTGCATGCTTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	72161336	72151713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
transcript_146123.known	chrX	-	1474	8	FSM	ENSMUSG00000058328.14	ENSMUST00000114521.8	1474	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	121.461844180947	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72161308	72151240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
transcript_146127.nnic	chrX	+	3382	6	NNC	ENSMUSG00000067771.10	novel	2864	5	NA	NA	-414	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	22.4499443206436	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGTGTAGATGTCTAAGA	NA	False	NA	NA	False	AATAAA	-18	NA	72160238	72172868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_72160742_72166217_72166322_72166673_72166742_72167034_72167132_72168423_72168590_72170424
transcript_146128.nnic	chrX	+	2985	6	NNC	ENSMUSG00000067771.10	novel	2864	5	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	23.412817002659	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGTGTAGATGTCTAAGA	NA	False	NA	NA	False	AATAAA	-18	NA	72160667	72172868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_72160742_72161226_72161363_72166673_72166742_72167034_72167132_72168423_72168590_72170424
transcript_146132.known	chrX	+	2864	5	FSM	ENSMUSG00000067771.10	ENSMUST00000088459.9	2864	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	16.161296358894	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGTGTAGATGTCTAAGA	NA	False	NA	NA	False	AATAAA	-18	NA	72160652	72172868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72160742_72166673_72166742_72167034_72167132_72168423_72168590_72170424
transcript_146134.known	chrX	+	2773	4	FSM	ENSMUSG00000067771.10	ENSMUST00000179117.2	2773	4	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_3	2.44948974278318	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72166673	72172866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72166742_72167034_72167132_72168423_72168590_72170424
transcript_146137.known	chrX	+	1652	9	FSM	ENSMUSG00000072479.11	ENSMUST00000114518.9	1652	9	0	0	0	0	multi-exon	TRUE	canonical	3	121	junction_8	146.338167868127	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72192401	72202478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
transcript_146148.nnic	chrX	-	2966	6	NNC	ENSMUSG00000071745.2	novel	2862	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	22.5122189044083	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72193056	72180837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72187382_72187487_72192967
transcript_146149.nnic	chrX	-	2988	6	NNC	ENSMUSG00000071745.2	novel	2862	5	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	23.2860473245246	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72193046	72180837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72192347_72192484_72192967
transcript_146151.known	chrX	-	2862	5	FSM	ENSMUSG00000071745.2	ENSMUST00000080324.4	2862	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	17.5499287747842	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72193056	72180837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72192967
transcript_146164.known	chrX	+	1564	9	FSM	ENSMUSG00000073125.11	ENSMUST00000101486.5	1564	9	0	0	0	0	multi-exon	FALSE	canonical	3	836	junction_5	296.174779479955	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTCAGACTTGTTGGCA	NA	False	NA	NA	False	AATAAA	-8	NA	72235827	72246526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245552_72245645
transcript_146171.nnic	chrX	+	1563	8	NIC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-74	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_6	505.773079713883	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	72235738	72246535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72245455_72245552_72245645
transcript_146172.known	chrX	+	2384	8	FSM	ENSMUSG00000073125.11	ENSMUST00000138149.2	2384	8	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	448.163508791429	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	72235816	72246535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72235856_72237775_72237898_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
transcript_146178.known	chrX	+	3780	7	FSM	ENSMUSG00000073125.11	ENSMUST00000137641.8	3780	7	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_3	266.969203384127	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72235812	72246536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72241992_72243351_72243451_72245455_72245552_72245645
transcript_146181.known	chrX	+	1077	9	FSM	ENSMUSG00000067768.13	ENSMUST00000081827.4	1077	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	104.421546507414	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	15	True	AATAAA	-15	NA	72258037	72266056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72258064_72258379_72258463_72258846_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_146183.known	chrX	+	1200	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069077.10	1200	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	80.9281123899477	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72258088_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_146184.known	chrX	+	1304	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069103.11	1304	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	98.081519028816	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72258192_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_146188.known	chrX	+	2505	1	FSM	ENSMUSG00000078317.7	ENSMUST00000105111.4	2505	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGATTCTTATTGCTAATA	NA	False	NA	NA	False	NA	NA	NA	72271896	72274401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72271900_72274400
transcript_146189.nnic	chrX	-	1227	9	NNC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	110.415125775412	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286719	72277684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286183_72286267_72286557
transcript_146190.known	chrX	-	1104	9	FSM	ENSMUSG00000031362.18	ENSMUST00000114531.8	1104	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	121.935433734415	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286633	72277684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285789_72286183_72286267_72286581
transcript_146203.nnic	chrX	-	1680	10	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-66	0	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_5	600.2778986066	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72309062	72298145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303202_72303233_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
transcript_146207.known	chrX	-	1584	9	FSM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_5	383.166718772651	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308996	72298145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
transcript_146216.known	chrX	-	1656	9	FSM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_7	127.059963698248	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72336582	72326501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
transcript_146221.nnic	chrX	+	3059	5	Genic_Genomic	ENSMUSG00000082629.4	novel	2403	1	NA	NA	-5270	7767	multi-exon	TRUE	canonical	0	0	junction_1	1.22474487139159	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72335928	72351368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chrX_+_72336022_72338374_72338735_72339077_72339243_72341198_72343600_72351328
transcript_146222.nnic	chrX	+	2681	4	Genic_Genomic	ENSMUSG00000082629.4	novel	2403	1	NA	NA	-5252	7767	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72335946	72351368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chrX_+_72336022_72339077_72339243_72341198_72343600_72351328
transcript_146225.known	chrX	+	6284	5	FSM	ENSMUSG00000031365.14	ENSMUST00000114499.8	6284	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	9.63068014212911	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTCTTTCTTGACTCATT	NA	False	NA	12	True	NA	NA	NA	72386226	72402686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72386358_72388442_72388519_72395414_72395530_72396441_72396544_72396826
transcript_146226.known	chrX	-	1380	10	FSM	ENSMUSG00000031371.15	ENSMUST00000033737.15	1380	10	0	0	0	0	multi-exon	FALSE	canonical	3	498	junction_3	42.8281089190294	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
transcript_146229.nic	chrX	-	2250	9	NIC	ENSMUSG00000031371.15	novel	1380	10	NA	NA	-48	0	intron_retention	FALSE	canonical	3	498	junction_5	41.9545885452354	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502698	72480920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_72481172_72489415_72489531_72490533_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
transcript_146233.known	chrX	-	1032	7	FSM	ENSMUSG00000031371.15	ENSMUST00000077243.5	1032	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	203.601462557506	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72496604_72496667_72498472_72498541_72501579_72501696_72502440
transcript_146251.known	chrX	+	2722	4	FSM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	0	0	0	0	multi-exon	TRUE	canonical	3	583	junction_1	9.62635271879577	4533	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGAGGTTGTTGCTTCTT	NA	False	NA	28	True	AATAAA	-22	NA	72683024	72687120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72683248_72683798_72684411_72684952_72685409_72685689
transcript_146261.nnic	chrX	-	1486	12	NNC	ENSMUSG00000002012.14	novel	1532	12	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	20.4110648974504	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703729	72699599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_72699940_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
transcript_146264.known	chrX	-	1492	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114473.8	1492	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	19.8644164606543	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703330	72699599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703272
transcript_146265.known	chrX	-	1536	12	FSM	ENSMUSG00000002012.14	ENSMUST00000002087.14	1536	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	21.8518679346047	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703434	72699599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703332
transcript_146266.known	chrX	-	1532	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114472.8	1532	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_11	13.5176652099123	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	False	NA	-3	True	AATAAA	-14	NA	72703723	72699600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
transcript_146273.nnic	chrX	-	1469	11	NIC	ENSMUSG00000002012.14	novel	1532	12	NA	NA	-6	0	combination_of_known_splicesites	TRUE	canonical	2	5	junction_10	21.6148097377701	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703729	72699599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72703624
transcript_146289.known	chrX	+	1919	13	FSM	ENSMUSG00000019558.15	ENSMUST00000168831.8	1919	13	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_9	123.186398960636	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACAACCCACCAAAAATAG	NA	False	NA	7	True	AATAAA	-13	NA	72717563	72724895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72717657_72719243_72719376_72720255_72720506_72720926_72721060_72722241_72722377_72722471_72722576_72722669_72722795_72723290_72723404_72723524_72723654_72723737_72723841_72723937_72724039_72724110_72724282_72724565
transcript_146314.known	chrX	+	3964	13	FSM	ENSMUSG00000019558.15	ENSMUST00000033752.14	3964	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	125.529185406777	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTCCTGTTTCTGCTTC	NA	False	NA	30	True	AATAAA	-20	NA	72716755	72726108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72717657_72719243_72719376_72720255_72720506_72720926_72721060_72722241_72722377_72722471_72722576_72722669_72722795_72723290_72723404_72723524_72723678_72723737_72723841_72723937_72724039_72724110_72724282_72724565
transcript_146315.known	chrX	+	2151	13	FSM	ENSMUSG00000019558.15	ENSMUST00000164449.8	2151	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	125.696282982257	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAACCCACCAAAAATAGAT	NA	False	NA	9	True	AATAAA	-15	NA	72717312	72724897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72717657_72719243_72719376_72720255_72720506_72720926_72721060_72722241_72722377_72722471_72722576_72722699_72722795_72723290_72723404_72723524_72723663_72723737_72723841_72723937_72724039_72724110_72724282_72724565
transcript_146319.known	chrX	-	1219	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	0	0	0	0	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	800	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTGTGTCTAACTGAG	NA	False	NA	-13	True	AATAAA	-17	NA	72759781	72729783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
transcript_146325.known	chrX	+	3648	10	FSM	ENSMUSG00000031378.15	ENSMUST00000002084.14	3648	10	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_7	8.3901765016235	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCTCCTGAACTTGGT	NA	False	NA	18	True	AGTAAA	-19	NA	72760202	72782140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72761537_72764519_72764701_72772589_72772733_72772814_72772984_72774399_72774495_72777614_72777761_72778067_72778214_72780395_72780481_72780708_72780835_72780917
transcript_146333.nic	chrX	-	1333	13	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-30	0	combination_of_known_junctions	TRUE	canonical	2	205	junction_10	516.424862771816	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830258	72822568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830133
transcript_146334.known	chrX	-	1331	13	FSM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_10	445.162891535222	1235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830380
transcript_146343.known	chrX	-	2080	10	FSM	ENSMUSG00000002010.18	ENSMUST00000156299.8	2080	10	0	0	0	0	multi-exon	FALSE	canonical	3	1120	junction_7	119.009596044257	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
transcript_146369.nnic	chrX	+	957	7	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_2	575.300621897418	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5376	False	NA	48	True	AATAAA	-30	NA	72830577	72834432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_72830913_72832440_72832560_72832660_72832760_72833405_72833481_72833636_72833727_72833964_72834031_72834259
transcript_14637.known	chr10	+	478	3	FSM	ENSMUSG00000025393.13	ENSMUST00000126751.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5636	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127924420	127926142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127924442_127924825_127925028_127925887
transcript_146370.nnic	chrX	+	932	7	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	599.846276603894	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5376	False	NA	48	True	AATAAA	-30	NA	72830577	72834432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_72830913_72832440_72832560_72832685_72832760_72833405_72833481_72833636_72833727_72833964_72834031_72834259
transcript_146373.nnic	chrX	+	1184	6	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-50	0	intron_retention	FALSE	canonical	3	147	junction_2	607.911835713042	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCTCCTGTGTCTATGG	5382	False	NA	52	True	AATAAA	-34	NA	72830583	72834436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_72830913_72832440_72832560_72832660_72832760_72833405_72833481_72833636_72833727_72833964
transcript_146376.known	chrX	+	765	6	FSM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	441.755135793575	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5466	False	NA	48	True	AATAAA	-30	NA	72830667	72834432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
transcript_146379.nic	chrX	+	1087	5	ISM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	-52	-6	-52	0	intron_retention	FALSE	canonical	3	1181	junction_1	174.03789098929	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCTCCTGTGTCTATGG	5380	False	NA	52	True	AATAAA	-34	NA	72830581	72834436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964
transcript_146386.known	chrX	+	619	4	FSM	ENSMUSG00000002014.13	ENSMUST00000155552.8	619	4	0	0	0	0	multi-exon	FALSE	canonical	3	1181	junction_1	200.077207319797	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGACCCCAGCACCTCCC	5588	False	NA	NA	False	NA	NA	NA	72830789	72833938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636
transcript_146391.known	chrX	+	522	3	FSM	ENSMUSG00000002014.13	ENSMUST00000142829.2	522	3	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	615	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGCCCCATTTCTGAAGT	5669	False	NA	NA	False	NA	NA	NA	72830870	72833769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72830913_72832443_72832560_72833405
transcript_146392.known	chrX	+	383	2	FSM	ENSMUSG00000002014.13	ENSMUST00000136544.2	383	2	0	0	0	0	multi-exon	FALSE	canonical	3	1181	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGGCACAGCGAGGCCAG	5586	False	NA	NA	False	NA	NA	NA	72830787	72832698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72830913_72832440
transcript_146393.known	chrX	+	2119	5	FSM	ENSMUSG00000002014.13	ENSMUST00000130738.8	2119	5	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_4	120.079921302439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTACATTCAAGACAC	5628	False	NA	33	True	AATAAA	-15	NA	72830829	72834417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
transcript_146394.known	chrX	-	3970	8	FSM	ENSMUSG00000002006.13	ENSMUST00000002080.12	3970	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.699854212223765	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGGACTTGTGTTCATT	NA	False	NA	-6	True	AATAAA	-22	NA	72868575	72836964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72839527_72839706_72839818_72839981_72840084_72840435_72840499_72841799_72841899_72842363_72842455_72843439_72843694_72867887
transcript_146395.known	chrX	-	3123	22	FSM	ENSMUSG00000031389.18	ENSMUST00000130976.8	3123	22	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	11.1118820594215	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAATAGCCTGTG	NA	False	NA	NA	False	CATAAA	-17	NA	72954877	72938137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72938570_72939553_72939654_72939990_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72943790_72943883_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72949762_72949826_72950034_72950198_72950274_72950483_72954768
transcript_146399.known	chrX	-	3051	21	FSM	ENSMUSG00000031389.18	ENSMUST00000114407.9	3051	21	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_18	11.824127874816	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAATAGCCTGTG	NA	False	NA	NA	False	CATAAA	-17	NA	72954877	72938137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72938570_72939553_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72943790_72943883_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72950034_72950198_72950274_72950483_72954768
transcript_146403.known	chrX	-	3145	20	FSM	ENSMUSG00000031389.18	ENSMUST00000148319.8	3145	20	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_17	11.720427511513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAATAGCCTGTG	NA	False	NA	NA	False	CATAAA	-17	NA	72954877	72938137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72938570_72939553_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72950034_72950198_72950274_72950483_72954768
transcript_146408.known	chrX	-	979	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114387.8	979	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	343.561063104701	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965494	72960492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72960889_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
transcript_146419.known	chrX	-	1418	11	FSM	ENSMUSG00000031387.15	ENSMUST00000116578.8	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	1767	junction_7	141.190120050944	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974456	72965726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
transcript_146421.known	chrX	-	1318	11	FSM	ENSMUSG00000031387.15	ENSMUST00000114379.8	1318	11	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_8	509.144390129166	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974398	72965726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
transcript_146430.nic	chrX	-	1292	10	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	225	junction_8	580.11297324607	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	-4	True	AATAAA	-16	NA	72974408	72965728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72974013_72974124_72974319
transcript_146455.known	chrX	-	2125	7	FSM	ENSMUSG00000031387.15	ENSMUST00000135711.8	2125	7	0	0	0	0	multi-exon	FALSE	canonical	3	1962	junction_4	102.832252830628	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	-4	True	AATAAA	-16	NA	72974423	72965728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72974124_72974319
transcript_146466.known	chrX	-	8138	26	FSM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_17	65.7475900699029	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTATTTACCCGTGTGT	NA	False	NA	-10	True	ATTAAA	-23	NA	73009963	72986397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
transcript_146468.known	chrX	-	8262	26	FSM	ENSMUSG00000031386.15	ENSMUST00000114372.3	8262	26	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_7	97.9245913956244	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATCTGGTATTTACCCG	NA	False	NA	-15	True	ATTAAA	-18	NA	73009957	72986402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991124_72991447_72992025_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
transcript_146473.nic	chrX	-	2202	4	ISM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	-1215	15539	-1215	-3210	5prime_fragment	FALSE	canonical	3	305	junction_1	27.4509663865511	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAACAAGAAATCCAAGCT	NA	False	NA	NA	False	NA	NA	NA	73011178	73001936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_73002067_73002728_73002890_73003189_73003339_73009416
transcript_146475.known	chrX	-	2537	15	FSM	ENSMUSG00000031392.19	ENSMUST00000068286.12	2537	15	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	113.226610415231	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCCAACCTATATGCCTT	NA	False	NA	-12	True	NA	NA	NA	73067521	73057531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73057732_73059011_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066268_73066454_73066559_73066671_73066804_73066971_73067140_73067215
transcript_146479.known	chrX	-	2890	15	FSM	ENSMUSG00000031392.19	ENSMUST00000033769.15	2890	15	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	119.77847324566	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGACTGCTAGCTACAC	NA	False	NA	NA	False	NA	NA	NA	73067519	73058576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061506_73061624_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
transcript_14648.known	chr10	+	2446	14	FSM	ENSMUSG00000040054.18	ENSMUST00000219072.2	2446	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	119.423516659664	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAGAAAGAAAAGGTAA	NA	False	NA	29	True	NA	NA	NA	127928651	127955194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_127928720_127932307_127932393_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138
transcript_146486.known	chrX	-	2052	14	FSM	ENSMUSG00000031392.19	ENSMUST00000101458.9	2052	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	111.551405084523	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTTCACTCTGACAAATC	NA	False	NA	NA	False	AAGAAA	-21	NA	73067351	73059045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73059108_73060153_73060304_73060735_73061037_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066268_73066454_73066559_73066671_73066804_73066971_73067140_73067215
transcript_146488.known	chrX	-	3825	14	FSM	ENSMUSG00000031392.19	ENSMUST00000114352.8	3825	14	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_10	79.7365484565473	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATATGCCTTTTAATTTT	NA	False	NA	-4	True	NA	NA	NA	73067521	73057523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066268_73066454_73066559_73066671_73066804_73066971_73067140_73067215
transcript_146510.nic	chrX	-	3007	13	NIC	ENSMUSG00000031392.19	novel	2890	15	NA	NA	-45	0	intron_retention	FALSE	canonical	3	272	junction_10	42.1586784264719	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGACTGCTAGCTACAC	NA	False	NA	NA	False	NA	NA	NA	73067569	73058576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066559_73066671_73066804_73066971_73067140_73067215
transcript_146549.known	chrX	-	2812	12	FSM	ENSMUSG00000031392.19	ENSMUST00000148706.8	2812	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	109.416710464744	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-35	NA	73067432	73058411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971
transcript_146552.known	chrX	-	10538	4	FSM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	52.083266666624	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGGTCTGGGCTTTCAT	NA	False	NA	NA	False	GATAAA	-18	NA	73129275	73070197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73080101_73080587_73080939_73123514_73123639_73129115
transcript_146553.known	chrX	-	1739	3	FSM	ENSMUSG00000031393.17	ENSMUST00000033770.13	1739	3	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	51.5	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTAGAGTTTCGTGGC	NA	False	NA	NA	False	AATAAA	-22	NA	73129296	73078893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73080101_73080587_73080939_73129115
transcript_146556.known	chrX	-	4563	1	FSM	ENSMUSG00000031393.17	ENSMUST00000198358.2	4563	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAACGA	NA	False	NA	NA	False	NA	NA	NA	73129203	73124640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73124600_73129200
transcript_146557.known	chrX	+	2473	13	FSM	ENSMUSG00000031397.12	ENSMUST00000010127.12	2473	13	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_9	3.8151743807532	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTATGCAGTTTGTGCC	6476	False	NA	6	True	AATAAA	-18	NA	73220864	73252106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73221030_73225389_73225505_73234827_73234926_73237124_73237317_73237399_73237528_73240589_73240784_73241245_73241411_73244203_73244361_73246136_73246268_73248479_73248564_73249479_73249577_73249950_73250071_73251279
transcript_146560.known	chrX	+	1595	6	FSM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	18.1592951405059	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTATGTTTTGGTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	73298292	73301493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
transcript_146561.known	chrX	+	1338	6	FSM	ENSMUSG00000001964.15	ENSMUST00000088313.5	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	106.854293315711	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	AATAAA	-13	NA	73298435	73305154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73304387
transcript_146565.known	chrX	+	614	3	FSM	ENSMUSG00000001964.15	ENSMUST00000129516.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	26.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGAGGCCAGTTAAGGGG	NA	False	NA	NA	False	NA	NA	NA	73298366	73299291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73298640_73298813_73298922_73299058
transcript_146569.known	chrX	+	648	7	FSM	ENSMUSG00000008682.14	ENSMUST00000151702.8	648	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	3469.80780767786	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGTGGTCCTCTGGACAA	NA	False	NA	-98	True	AATATA	-6	NA	73314462	73316631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73314485_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
transcript_14657.nnic	chr10	+	2518	13	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	471	0	at_least_one_novel_splicesite	FALSE	canonical	3	275	junction_3	39.5561310039291	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAAAGCGAAGGGGAAGG	NA	False	NA	44	True	AAGAAA	-6	NA	127932719	127955209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138
transcript_146572.known	chrX	+	855	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	0	0	0	0	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314465	73316741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
transcript_146575.known	chrX	+	600	5	FSM	ENSMUSG00000008682.14	ENSMUST00000125775.8	600	5	0	0	0	0	multi-exon	FALSE	canonical	3	7516	junction_1	894.303919257877	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTGGGGCTTCACCA	NA	False	NA	NA	False	NA	NA	NA	73314591	73316531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73314631_73315265_73315514_73315784_73315924_73316277_73316441_73316520
transcript_146593.known	chrX	+	1786	10	FSM	ENSMUSG00000009995.18	ENSMUST00000114180.11	1786	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	91.4165611600053	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326367	73333754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332053_73332120_73332267_73332321_73332710_73332789_73332904
transcript_146594.known	chrX	+	2891	2	FSM	ENSMUSG00000009995.18	ENSMUST00000149055.8	2891	2	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATTAAAGTT	NA	False	NA	NA	False	NA	NA	NA	73326355	73329493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73327007_73327253
transcript_146602.known	chrX	+	2157	10	FSM	ENSMUSG00000019087.14	ENSMUST00000114171.10	2157	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	217.728565868289	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGGCTTCGTGTCACT	NA	False	NA	14	True	AATAAA	-19	NA	73340768	73348295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347336
transcript_146603.known	chrX	+	2189	10	FSM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	0	0	0	0	multi-exon	TRUE	canonical	3	647	junction_4	26.5934179176579	1991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGTAGATTTTTTTTTC	NA	False	NA	46	True	NA	NA	NA	73340702	73348327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
transcript_14663.nic	chr10	+	2379	12	ISM	ENSMUSG00000040054.18	ENSMUST00000219072.2	2446	14	-110	725	-110	-725	5prime_fragment	FALSE	canonical	3	11	junction_1	123.365210681989	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGAGGCAGAAGGTCC	NA	False	NA	NA	False	GATAAA	-24	NA	127928541	127954469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_127928720_127932307_127932393_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423
transcript_146639.known	chrX	+	2666	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5948	False	NA	15	True	AATAAA	-16	NA	73348603	73355468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
transcript_146641.nic	chrX	+	2944	10	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-21	0	intron_retention	FALSE	canonical	3	728	junction_6	47.3648825477846	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGGCTCTTTAGGTTC	5927	False	NA	13	True	AATAAA	-14	NA	73348582	73355466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
transcript_146645.known	chrX	+	3696	9	FSM	ENSMUSG00000015291.11	ENSMUST00000146013.8	3696	9	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_5	44.1572120383522	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGGCTCTTTAGGTTC	5962	False	NA	13	True	AATAAA	-14	NA	73348617	73355466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73353741_73353995_73354141_73354243_73354299_73354392
transcript_146652.known	chrX	+	1383	13	FSM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_3	69.864700592566	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAGAACCTGCGCTTTA	199	False	NA	NA	False	AATAAA	-33	NA	73356638	73363755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
transcript_146658.nic	chrX	+	708	5	ISM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	-61	2697	-61	-513	5prime_fragment	FALSE	canonical	3	663	junction_3	63.0926897508737	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGGAAGAACCCTGATGT	138	False	NA	NA	False	AAAAAG	-4	NA	73356577	73361058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035
transcript_146659.nic	chrX	+	685	4	ISM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	-61	4577	-61	-2393	5prime_fragment	FALSE	canonical	3	663	junction_3	58.9312216816255	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGGTACAGCCCACCAG	138	False	NA	NA	False	NA	NA	NA	73356577	73359178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032
transcript_146660.nnic	chrX	-	700	4	NNC	ENSMUSG00000015289.5	novel	761	3	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_3	667.988522855495	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4443	False	NA	-18	True	AATAAA	-30	NA	73397274	73395766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_73396105_73396479_73396609_73396930_73397052_73397162
transcript_146661.known	chrX	-	761	3	FSM	ENSMUSG00000015289.5	ENSMUST00000015433.4	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	1433	junction_2	31	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73396105_73396479_73396609_73396930
transcript_146663.known	chrX	-	746	3	FSM	ENSMUSG00000015289.5	ENSMUST00000114152.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	662	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAGCCTCTAAATTTT	4536	False	NA	-19	True	AATAAA	-29	NA	73397181	73395767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73396105_73396450_73396609_73396930
transcript_146667.known	chrX	-	1997	2	FSM	ENSMUSG00000015289.5	ENSMUST00000114153.2	1997	2	0	0	0	0	multi-exon	FALSE	canonical	3	1433	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTCTTCTTAAGATTTT	4517	False	NA	NA	False	AATAAA	-23	NA	73397200	73394881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73396609_73396930
transcript_146669.known	chrX	-	2442	4	FSM	ENSMUSG00000015290.16	ENSMUST00000155676.8	2442	4	0	0	0	0	multi-exon	FALSE	canonical	3	1598	junction_1	83.5636816379513	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGAATCCTGTGTAATA	NA	False	NA	-6	True	AATAAA	-20	NA	73412279	73409323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73411193_73411306_73411516_73411758_73411865_73412021
transcript_146672.known	chrX	-	2220	3	FSM	ENSMUSG00000015290.16	ENSMUST00000126117.2	2220	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	782.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGAATCCTGTGTAAT	NA	False	NA	-7	True	AATAAA	-19	NA	73412164	73409324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73411193_73411306_73411516_73412021
transcript_146678.known	chrX	-	2023	3	FSM	ENSMUSG00000032806.14	ENSMUST00000037967.6	2023	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	8.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73416955	73412822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73414618_73416219_73416289_73416796
transcript_146679.known	chrX	-	614	2	FSM	ENSMUSG00000015290.16	ENSMUST00000126191.2	614	2	0	0	0	0	multi-exon	FALSE	canonical	3	1799	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTAGCAGATGCCAGCAG	NA	False	NA	NA	False	NA	NA	NA	73412119	73411348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73411865_73412021
transcript_146680.known	chrX	-	1910	2	FSM	ENSMUSG00000032806.14	ENSMUST00000073067.11	1910	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73416911	73412822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73414618_73416796
transcript_146681.known	chrX	-	369	3	FSM	ENSMUSG00000015290.16	ENSMUST00000125914.2	369	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	897.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGCCACCCCCATCTG	NA	False	NA	NA	False	NA	NA	NA	73412109	73411402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73411578_73411758_73411865_73412021
transcript_146684.nic	chrX	-	1542	10	NIC	ENSMUSG00000031399.16	novel	1899	9	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_9	35.9828491381487	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGAGTCAAGGGTGGTG	NA	False	NA	-6	True	AATAAA	-43	NA	73436872	73428324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280_73436354_73436704
transcript_146686.known	chrX	-	1899	9	FSM	ENSMUSG00000031399.16	ENSMUST00000114143.10	1899	9	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	16.2322017915007	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGAGTCAAGGGTGGTG	NA	False	NA	-6	True	AATAAA	-43	NA	73436878	73428324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
transcript_146694.known	chrX	-	507	6	FSM	ENSMUSG00000031399.16	ENSMUST00000114138.8	507	6	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_3	12.8156154748806	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGATTCTGTTTTGTGAC	NA	False	NA	NA	False	AATACA	-18	NA	73436293	73430517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
transcript_146698.known	chrX	-	2652	13	FSM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_8	19.8990507869653	385	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCCTTGTTCTTTTC	NA	False	NA	-6	True	ATTAAA	-18	NA	73472800	73453088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
transcript_1467.nic	chr1	-	3194	28	ISM	ENSMUSG00000018417.15	ENSMUST00000018561.14	4767	31	-92	7963	51	2396	5prime_fragment	FALSE	canonical	3	256	junction_18	27.6477450294345	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAGAAACTCAAAGATGC	NA	False	NA	NA	False	NA	NA	NA	51955179	51797115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_14671.nnic	chr10	+	2326	11	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	471	-725	at_least_one_novel_splicesite	FALSE	canonical	3	275	junction_3	37.4364795353409	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGAGGCAGAAGGTCC	NA	False	NA	NA	False	GATAAA	-24	NA	127932719	127954469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423
transcript_146713.known	chrX	+	6785	10	FSM	ENSMUSG00000004221.17	ENSMUST00000180230.8	6785	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	44.5914236342415	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCTGCAGTTTTCCAGA	NA	False	NA	NA	False	NA	NA	NA	73436896	73497384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73437012_73476410_73476613_73477408_73477621_73480772_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
transcript_146715.known	chrX	+	4530	10	FSM	ENSMUSG00000004221.17	ENSMUST00000064407.10	4530	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	31.82591536608	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATGCACTCTGTCCTCC	NA	False	NA	1	True	AATAAA	-15	NA	73473309	73495126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_73473428_73476410_73476613_73477408_73477621_73480772_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
transcript_146716.known	chrX	-	627	3	FSM	ENSMUSG00000079536.2	ENSMUST00000114125.2	627	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTACCAGATACAAGAA	NA	False	NA	NA	False	NA	NA	NA	73525005	73523892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_73524038_73524213_73524343_73524652
transcript_146718.known	chrX	-	2153	10	FSM	ENSMUSG00000032750.14	ENSMUST00000037374.11	2153	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.5475986974649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTTTCTCACAAGTTTACA	NA	False	NA	NA	False	NA	NA	NA	74128511	74032126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74032443_74033659_74033777_74043570_74043707_74045416_74045499_74047929_74048138_74048921_74048978_74068383_74068863_74069594_74069812_74076776_74077081_74128273
transcript_146720.known	chrX	-	750	3	FSM	ENSMUSG00000032750.14	ENSMUST00000127024.2	750	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAGTTCAATGTTTTTG	2179	False	NA	NA	False	NA	NA	NA	74012731	74011387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74011592_74011767_74011897_74012314
transcript_146721.known	chrX	+	2804	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	0	0	0	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74139459	74153383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
transcript_146787.known	chrX	-	2525	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_6	19.4626151487859	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGTCCAAGATTAT	NA	False	NA	NA	False	AATAAA	-17	NA	74174622	74153338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
transcript_146793.nnic	chrX	+	1528	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1860	-215	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_1	848.656143558744	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAACAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	74147694	74153168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
transcript_146805.known	chrX	+	2562	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTCAGACTCCACTTGT	537	False	NA	NA	False	AATAAA	-21	NA	74426004	74440065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
transcript_146810.known	chrX	-	980	6	FSM	ENSMUSG00000031200.17	ENSMUST00000114081.2	980	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	14.0370937162933	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATCACCAAGGACTTGGT	NA	False	NA	NA	False	NA	NA	NA	74460194	74454382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620_74459820_74460143
transcript_146811.known	chrX	-	1592	5	FSM	ENSMUSG00000031200.17	ENSMUST00000033542.11	1592	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	5.33853912601566	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACAACATTTTACATAT	NA	False	NA	NA	False	NA	NA	NA	74460149	74454049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620
transcript_146812.nnic	chrX	-	806	4	NNC	ENSMUSG00000090110.9	novel	507	4	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	27.1825107171668	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460183	74448451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_74448825_74453151_74453220_74459620_74459820_74460017
transcript_146813.known	chrX	-	507	4	FSM	ENSMUSG00000090110.9	ENSMUST00000149863.3	507	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	9.20144916122817	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTATTTACTGTCCCT	NA	False	NA	NA	False	AGTAAA	-44	NA	74460190	74448631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74448825_74453151_74453220_74459620_74459820_74460143
transcript_146814.known	chrX	-	992	3	FSM	ENSMUSG00000090110.9	ENSMUST00000033543.14	992	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460171	74448451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74448825_74453151_74453220_74459620
transcript_146817.known	chrX	+	1595	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	0	0	0	0	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGACAATTTTTTCATT	NA	False	NA	14	True	ATTAAA	-20	NA	74557904	74578548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
transcript_146818.known	chrX	+	632	5	FSM	ENSMUSG00000031197.12	ENSMUST00000114070.10	632	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	774.241685457455	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTCCTTATTAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	74557904	74567652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74567441
transcript_146821.known	chrX	-	3401	2	FSM	ENSMUSG00000031202.6	ENSMUST00000033545.6	3401	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGTGTGTTGTAGCTAT	442	False	NA	NA	False	AGTAAA	-28	NA	74621837	74615651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74618614_74621398
transcript_146823.known	chrX	-	3149	16	FSM	ENSMUSG00000016382.16	ENSMUST00000114059.10	3149	16	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_13	28.3953047762008	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCTTTTGTTTTAATGA	NA	False	NA	NA	False	AATAAA	-26	NA	74918788	74829259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74918653
transcript_146825.known	chrX	-	3242	16	FSM	ENSMUSG00000016382.16	ENSMUST00000033547.14	3242	16	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_15	76.3600826493936	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTCTCTACTCTCTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	74918180	74829268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74917943
transcript_14683.nnic	chr10	-	1732	15	NNC	ENSMUSG00000040043.18	novel	3380	15	NA	NA	-13	96	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_13	102.033507901541	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTTCTTGCTTTGTATT	NA	False	NA	-1	True	AAAAAG	-22	NA	128016179	127969096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218_128012306_128015661_128015715_128015817
transcript_146848.known	chrX	+	5234	16	FSM	ENSMUSG00000025246.14	ENSMUST00000088217.12	5234	16	0	0	0	0	multi-exon	TRUE	canonical	3	377	junction_1	40.4669412401448	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACATAGTGACTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	76554618	76706589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_76554876_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
transcript_146863.known	chrX	-	4146	9	FSM	ENSMUSG00000035725.14	ENSMUST00000036333.14	4146	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	6.21992765231236	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTATTTGGGAGAGGGA	NA	False	NA	NA	False	NA	NA	NA	76839884	76805016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76814852_76814949_76816721_76816842_76825643_76825908_76829733_76829903_76839153
transcript_146867.nnic	chrX	-	2959	8	NIC	ENSMUSG00000035725.14	novel	4146	9	NA	NA	5	-612	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	18.3180517634426	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAATCCCCTCTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	76839573	76805628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76814852_76814949_76816721_76816842_76829733_76829903_76839153
transcript_146872.known	chrX	+	402	1	FSM	ENSMUSG00000081049.2	ENSMUST00000118723.2	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCGGTGACTTGATGTT	NA	False	NA	NA	False	AAAAAG	-13	NA	78238652	78239054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_78238700_78239100
transcript_146874.nnic	chrX	-	2160	5	NNC	ENSMUSG00000046942.18	novel	1854	4	NA	NA	-109	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	126.903506649738	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78715150	78666836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_78668390_78671446_78671527_78673369_78673567_78685326_78685395_78714888
transcript_146877.nnic	chrX	-	1922	4	NNC	ENSMUSG00000046942.18	novel	1725	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	145.164274760241	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78679188	78666836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_78668390_78671446_78671527_78673369_78673567_78679096
transcript_146878.known	chrX	-	1854	4	FSM	ENSMUSG00000046942.18	ENSMUST00000052283.7	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	116.448367194316	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78715041	78666836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_78668390_78671446_78671527_78685326_78685395_78714888
transcript_146879.known	chrX	-	1725	3	FSM	ENSMUSG00000046942.18	ENSMUST00000114016.10	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	42	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78679188	78666836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_78668390_78671446_78671527_78679096
transcript_146880.known	chrX	+	4007	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	0	0	0	0	multi-exon	TRUE	canonical	3	148	junction_2	10.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTACTTTGTGTCTTC	NA	False	NA	18	True	ATTAAA	-24	NA	80114321	80141478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_80114767_80127896_80128038_80138057
transcript_146887.nic	chrX	+	2147	17	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-78	86	combination_of_known_junctions	FALSE	canonical	3	247	junction_13	44.1996535619907	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCCCGCATGGTTTTTAT	NA	False	NA	5	True	AATAAA	-16	NA	84091822	84246190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
transcript_146888.nic	chrX	+	4611	17	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-78	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_13	44.1996535619907	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTATTGGTTGGACTGTA	NA	False	NA	19	True	AATAAA	-25	NA	84091822	84248654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
transcript_14689.known	chr10	-	3302	14	FSM	ENSMUSG00000040043.18	ENSMUST00000099139.9	3302	14	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_13	100.648665396784	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTCATAAGTACACCTCCA	NA	False	NA	NA	False	NA	NA	NA	128016166	127967426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128015661_128015715_128015817
transcript_146891.known	chrX	+	1383	9	FSM	ENSMUSG00000045103.20	ENSMUST00000149433.2	1383	9	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_8	32.8916307744082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84091927	84188017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634
transcript_146895.known	chrX	+	2133	7	FSM	ENSMUSG00000045103.20	ENSMUST00000132333.8	2133	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_3	27.9011150713053	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAGAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	84091924	84184342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933
transcript_146898.known	chrX	+	6364	9	FSM	ENSMUSG00000035476.10	ENSMUST00000048250.10	6364	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	26.186828750347	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTGCATCTTTTCTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	84617627	84678075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_84617772_84619155_84619217_84652995_84653191_84657576_84659036_84659979_84660141_84665159_84665254_84667947_84668032_84671765_84671868_84674011
transcript_146902.known	chrX	-	4279	21	FSM	ENSMUSG00000025059.17	ENSMUST00000113978.9	4279	21	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_12	44.8534000940843	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820259	84745542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84782827_84782846_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_146903.nic	chrX	-	3725	21	NIC	ENSMUSG00000025059.17	novel	4279	21	NA	NA	-40	-660	combination_of_known_junctions	FALSE	canonical	3	6	junction_17	45.7159436083299	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGCATTTCTCATTTCC	NA	False	NA	-7	True	AATAAA	-17	NA	84820299	84746202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84793217_84793302_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_14691.known	chr10	-	1481	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGCAGTGCTGTGAAGTC	NA	False	NA	NA	False	TTTAAA	-14	NA	128012348	127968975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
transcript_146914.known	chrX	-	4245	20	FSM	ENSMUSG00000025059.17	ENSMUST00000156390.8	4245	20	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_19	13.2977827073068	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820243	84745542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_146919.known	chrX	-	4229	20	FSM	ENSMUSG00000025059.17	ENSMUST00000142152.2	4229	20	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_16	53.7474343908722	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820230	84745542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_84748003_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84793217_84793302_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_146922.known	chrX	-	4340	19	FSM	ENSMUSG00000025059.17	ENSMUST00000026039.15	4340	19	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	33.6576812358314	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820425	84745542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_84748003_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_146939.nnic	chrX	+	1791	3	NNC	ENSMUSG00000025056.5	novel	1808	2	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	419.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	11	True	AATAAA	-23	NA	85235315	85239553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_85235966_85236036_85236581_85238956
transcript_146941.known	chrX	+	1808	2	FSM	ENSMUSG00000025056.5	ENSMUST00000026036.5	1808	2	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_1	0	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	11	True	AATAAA	-23	NA	85235369	85239553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_85236581_85238956
transcript_146943.nnic	chrX	-	2243	4	NNC	ENSMUSG00000035427.19	novel	2403	3	NA	NA	-54	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	13.589211407093	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTATTCTTTGCTCA	NA	False	NA	NA	False	AATAAA	-17	NA	85299879	85293854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_85294567_85294785_85296089_85298945_85299028_85299733
transcript_146945.known	chrX	-	2403	3	FSM	ENSMUSG00000035427.19	ENSMUST00000113969.10	2403	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGATTTTATTCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	85299825	85293859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_85296089_85298945_85299028_85299733
transcript_146946.nnic	chrX	-	2192	3	NNC	ENSMUSG00000035427.19	novel	2401	3	NA	NA	-49	-49165	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	13	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTATTCTTTGCTCA	NA	False	NA	NA	False	AATAAA	-17	NA	85348748	85343026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_85344996_85347819_85347902_85348607
transcript_146947.known	chrX	-	842	1	FSM	ENSMUSG00000097961.2	ENSMUST00000182943.2	842	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87803918	87803076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_87803100_87803900
transcript_146951.known	chrX	-	5346	37	FSM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_20	43.7489682418023	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTACTGTGTTTTGTTTTG	4277	False	NA	-2	True	AATAAA	-19	NA	92675761	92348372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
transcript_146952.nnic	chrX	-	5227	36	NIC	ENSMUSG00000006678.7	novel	5346	37	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_25	84.0379408969787	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTACTGTGTTTTGTTTTG	4279	False	NA	-2	True	AATAAA	-19	NA	92675759	92348372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
transcript_146975.nic	chrX	-	1391	12	ISM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	-56	291368	-56	26941	5prime_fragment	FALSE	canonical	3	379	junction_1	41.8636116868943	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAAGTTCAAGTCCAAG	4221	False	NA	NA	False	TATAAA	-2	NA	92675817	92639740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
transcript_146977.nic	chrX	-	671	7	ISM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	-56	299687	-56	18622	5prime_fragment	FALSE	canonical	3	401	junction_2	32.1645076995678	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACTGGGGCTTTGCTC	4221	False	NA	NA	False	AAGAAA	-5	NA	92675817	92648059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
transcript_146978.nic	chrX	-	554	5	ISM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	-56	301089	-56	17220	5prime_fragment	FALSE	canonical	3	425	junction_4	24.1350367722943	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGATGTGAGTTTCATG	4221	False	NA	NA	False	AAGAAA	-2	NA	92675817	92649461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
transcript_146981.known	chrX	+	4888	8	FSM	ENSMUSG00000035246.17	ENSMUST00000045898.4	4888	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	4.01527694930148	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTTGCCTTGTTTATT	NA	False	NA	4	True	AATAAA	-17	NA	92718707	92793557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_92719083_92745690_92745791_92750163_92750281_92761390_92761543_92763784_92763864_92775282_92775426_92778370_92778560_92789824
transcript_146988.known	chrX	-	2115	12	FSM	ENSMUSG00000035232.9	ENSMUST00000045748.7	2115	12	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_5	23.1352473386711	386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACCTTGGTTTGAAAGA	NA	False	NA	-2	True	ATTAAA	-33	NA	92875807	92808212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_92808862_92812494_92812635_92820914_92821029_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
transcript_146998.known	chrX	+	2997	3	FSM	ENSMUSG00000081044.9	ENSMUST00000121565.8	2997	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGATTCCAATTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	93012264	93019076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_93013537_93015408_93015640_93017582
transcript_1470.nic	chr1	-	2951	26	ISM	ENSMUSG00000018417.15	ENSMUST00000018561.14	4767	31	-106	12596	37	0	5prime_fragment	FALSE	canonical	3	256	junction_16	24.5054769388396	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTTGTCACCGATAGAT	NA	False	NA	NA	False	AATAAA	-5	NA	51955193	51801748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_147000.known	chrX	-	7002	9	FSM	ENSMUSG00000079509.11	ENSMUST00000088102.12	7002	9	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_8	23.8298001460356	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGTGGAGTGTTGGCTA	NA	False	NA	-1	True	AATAAA	-22	NA	93167013	93118236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93157801_93157870_93166673
transcript_147005.known	chrX	-	6933	8	FSM	ENSMUSG00000079509.11	ENSMUST00000113927.8	6933	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	34.1317973719043	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTAGTGGAGTGTTGGCT	NA	False	NA	-2	True	AATAAA	-21	NA	93167013	93118237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93166673
transcript_14701.known	chr10	+	2398	18	FSM	ENSMUSG00000044005.14	ENSMUST00000159440.8	2398	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	26.6050181285294	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATCACCATTGTAGCACC	NA	False	NA	75	True	NA	NA	NA	128030594	128045873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128030777_128035050_128035151_128035505_128035628_128036012_128036172_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
transcript_147010.nic	chrX	-	1700	8	ISM	ENSMUSG00000079509.11	ENSMUST00000088102.12	7002	9	-80	6122	-80	1530	5prime_fragment	FALSE	canonical	3	51	junction_7	25.4726744347181	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAGACCTGATTCCAGG	NA	False	NA	NA	False	AAGAAA	-2	NA	93167093	93124358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93157801_93157870_93166673
transcript_147021.known	chrX	-	3647	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	0	0	0	0	multi-exon	TRUE	canonical	3	1008	junction_2	64.9970120101527	678	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	-2	True	AATAAA	-21	NA	93256315	93232312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
transcript_147029.nic	chrX	+	1143	5	NIC	ENSMUSG00000043929.17	novel	627	4	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	18.9868375460475	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCAGCAGCCTGGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	93278203	93297669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_93278260_93278826_93279027_93285550_93285602_93296020_93296733_93297545
transcript_14703.known	chr10	+	2573	18	FSM	ENSMUSG00000044005.14	ENSMUST00000044776.13	2573	18	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_3	13.3766309680488	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAATTTTTATTTTATAT	NA	False	NA	10	True	AATAAA	-16	NA	128030325	128045808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128030777_128035050_128035151_128035505_128035628_128036041_128036172_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
transcript_147030.known	chrX	+	1227	5	FSM	ENSMUSG00000043929.17	ENSMUST00000113911.9	1227	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	15.1224171348366	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	93278595	93297673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93297545
transcript_147031.known	chrX	+	3944	4	FSM	ENSMUSG00000043929.17	ENSMUST00000096369.10	3944	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	6.59966329107444	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATGAGTAAGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	93278592	93299574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020
transcript_147032.known	chrX	+	1235	4	FSM	ENSMUSG00000043929.17	ENSMUST00000113908.8	1235	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	24.3447461820136	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCAGCAGCCTGGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	93278532	93297669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_93278732_93278826_93279027_93296020_93296733_93297545
transcript_147034.known	chrX	+	784	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113898.8	784	9	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_1	51.8975854447969	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTGGGTGATGCCATA	NA	False	NA	NA	False	AGTAAA	-39	NA	93410722	93460567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_93410769_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
transcript_147036.known	chrX	+	1032	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113896.8	1032	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	148.965547610849	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410770	93460699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_93410933_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
transcript_147048.known	chrX	-	2821	13	FSM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	0	0	0	0	multi-exon	TRUE	canonical	3	1240	junction_10	166.264514821681	3122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	-2	True	AATAAA	-21	NA	93585749	93579079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
transcript_14705.nic	chr10	+	2714	18	NIC	ENSMUSG00000044005.14	novel	2573	18	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	22.5802682028077	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAATTTTTATTTTATAT	NA	False	NA	10	True	AATAAA	-16	NA	128030457	128045808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_128031050_128035050_128035151_128035505_128035628_128036041_128036172_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
transcript_147051.nnic	chrX	-	2770	12	NIC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_11	424.670839962022	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	-2	True	AATAAA	-21	NA	93585772	93579079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93585497
transcript_147053.known	chrX	-	2884	12	FSM	ENSMUSG00000025151.17	ENSMUST00000153386.8	2884	12	0	0	0	0	multi-exon	FALSE	canonical	3	1240	junction_9	165.668493041908	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGTGCTTCTCATC	NA	False	NA	-4	True	AATAAA	-19	NA	93585596	93579081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
transcript_147082.known	chrX	+	2491	1	FSM	ENSMUSG00000071723.8	ENSMUST00000096368.4	2491	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTTGAATAATGCT	4256	False	NA	22	True	AATAAA	-28	NA	93679674	93682165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_93679700_93682200
transcript_147084.known	chrX	-	8496	2	FSM	ENSMUSG00000050332.8	ENSMUST00000084535.6	8496	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAAGTGTTTTCTTGTTGT	NA	False	NA	NA	False	AATAAA	-30	NA	94488478	94463923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_94472205_94488263
transcript_147086.known	chrX	-	2219	5	FSM	ENSMUSG00000035062.14	ENSMUST00000044382.7	2219	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	3.76662979332984	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGCTAACTGAGTGC	881	False	NA	NA	False	AATAAA	-15	NA	94702115	94682804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_94684258_94685769_94685933_94686913_94687087_94688912_94689085_94701857
transcript_147089.known	chrX	-	2530	13	FSM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	0	0	0	0	multi-exon	FALSE	canonical	3	815	junction_5	66.9966831683148	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000519	94978940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
transcript_147090.known	chrX	-	2581	14	FSM	ENSMUSG00000057421.13	ENSMUST00000113864.3	2581	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	331.353544718678	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000519	94978940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991003_94991055_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
transcript_147092.known	chrX	+	3842	13	FSM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	0	0	0	0	multi-exon	FALSE	canonical	3	982	junction_10	94.3325971702724	1199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGACTCAGTCTTTCTG	NA	False	NA	6	True	AATAAA	-16	NA	95139647	95212158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
transcript_1471.nic	chr1	-	2860	25	ISM	ENSMUSG00000018417.15	ENSMUST00000018561.14	4767	31	-50	13894	-37	-1298	5prime_fragment	FALSE	canonical	3	256	junction_15	25.003194240381	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGATACTATGTATATG	NA	False	NA	NA	False	AAGAAA	-30	NA	51955137	51803046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_147102.nic	chrX	+	1429	9	ISM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	-234	5140	-234	-5140	5prime_fragment	FALSE	canonical	3	1025	junction_6	95.9367467397139	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGGAGAAGATTGAGCG	NA	False	NA	15	True	NA	NA	NA	95139413	95207018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972
transcript_147103.nic	chrX	+	1276	8	ISM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	-127	8301	-127	6212	5prime_fragment	FALSE	canonical	3	1025	junction_6	97.3166512588925	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGTGCTATATAGAGTGC	NA	False	NA	NA	False	NA	NA	NA	95139520	95203857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693
transcript_147107.known	chrX	+	1883	4	FSM	ENSMUSG00000031207.17	ENSMUST00000149985.8	1883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1220	junction_3	48.6095555306659	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95139662	95197645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129
transcript_147108.known	chrX	+	1571	3	FSM	ENSMUSG00000031207.17	ENSMUST00000135027.2	1571	3	0	0	0	0	multi-exon	FALSE	canonical	3	1244	junction_2	44.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAGAAAAAAATATAAAATA	NA	False	NA	NA	False	NA	NA	NA	95139702	95195565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_95139850_95185470_95185555_95194225
transcript_147109.known	chrX	-	1479	12	FSM	ENSMUSG00000045802.14	ENSMUST00000059003.5	1479	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	7.96998501611043	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGCATATTGAAATCAATC	NA	False	NA	NA	False	NA	NA	NA	95411525	95351128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_95351419_95355322_95355384_95356633_95356734_95358396_95358613_95363891_95364023_95364209_95364292_95365602_95365665_95365900_95365977_95373119_95373245_95382022_95382151_95400740_95400850_95411426
transcript_147114.known	chrX	+	4611	22	FSM	ENSMUSG00000031209.15	ENSMUST00000113838.8	4611	22	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	3.14141380999441	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGGTGATTTTTGTGA	NA	False	NA	NA	False	ATTAAA	-26	NA	95499995	95618088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_95500222_95503180_95503376_95506496_95506698_95509415_95509661_95513550_95513764_95514338_95514522_95516417_95516673_95518983_95519153_95527636_95527774_95529832_95529965_95541453_95541663_95542592_95542744_95544112_95544326_95571115_95571330_95573006_95573147_95573899_95574032_95597448_95597556_95598440_95598667_95601115_95601256_95601644_95601808_95614585_95614631_95617173
transcript_147117.known	chrX	+	621	1	FSM	ENSMUSG00000082035.2	ENSMUST00000118924.2	621	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	379	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	95528464	95529085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_95528500_95529100
transcript_147120.known	chrX	-	4752	8	FSM	ENSMUSG00000034457.11	ENSMUST00000037353.10	4752	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	34.3130843134516	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTTGTTTATTCCTC	NA	False	NA	-23	True	AATAAA	-14	NA	96420822	96377445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_96381057_96382408_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_147121.known	chrX	-	2153	7	FSM	ENSMUSG00000034457.11	ENSMUST00000126283.8	2153	7	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_5	9.18331820930394	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTCACAAGTGTAAAAAGC	NA	False	NA	NA	False	ATTAAA	-17	NA	96420822	96381396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_147125.known	chrX	-	779	6	FSM	ENSMUSG00000034457.11	ENSMUST00000126609.2	779	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.0119928086271	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGGAAT	NA	False	NA	NA	False	GGGGCT	-33	NA	96420778	96385151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_147126.known	chrX	+	10048	8	FSM	ENSMUSG00000046532.9	ENSMUST00000052837.9	10048	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.03015750727543	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTGTGACTCTTGGTT	NA	False	NA	NA	False	ATTAAA	-26	NA	97192374	97366821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_97194941_97295291_97295444_97330194_97330312_97348842_97349131_97354583_97354729_97358481_97358613_97359457_97359616_97360330
transcript_147128.known	chrX	-	7170	25	FSM	ENSMUSG00000031214.14	ENSMUST00000033560.9	7170	25	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_23	4.90959944055181	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTCTGATCTAATCT	NA	False	NA	NA	False	NA	NA	NA	97934591	97597882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_97602012_97603191_97603234_97607235_97607287_97608321_97608488_97621989_97622314_97640633_97640782_97670519_97670680_97684513_97684620_97685356_97685416_97688515_97688601_97739604_97739680_97741892_97741956_97742461_97742496_97745470_97745550_97748635_97748728_97753683_97753785_97755946_97756077_97757712_97757818_97769610_97769722_97775970_97776073_97807310_97807383_97824561_97824624_97846690_97846787_97933687_97933861_97933986
transcript_14713.known	chr10	+	381	3	FSM	ENSMUSG00000044005.14	ENSMUST00000152928.2	381	3	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	8	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGGAATTAAACAGTTCAA	NA	False	NA	NA	False	AAAACA	-21	NA	128030674	128035684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128030777_128035050_128035151_128035505
transcript_147131.known	chrX	+	1020	6	FSM	ENSMUSG00000047694.13	ENSMUST00000140479.2	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_3	12.2376468326227	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAGAAAATAAACAAA	NA	False	NA	NA	False	NA	NA	NA	97981812	97987641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083
transcript_147136.known	chrX	+	4963	14	FSM	ENSMUSG00000031216.14	ENSMUST00000036606.14	4963	14	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_1	6.60016137511158	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGCTCTGGAGAGTTTG	NA	False	NA	3	True	AATAAA	-18	NA	98086186	98118334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_98086401_98104333_98104406_98106970_98107053_98107999_98108064_98109163_98110570_98111194_98111369_98112179_98112340_98112793_98112993_98113352_98113564_98113827_98113943_98114879_98115105_98116039_98116258_98116359_98116537_98116688
transcript_14714.known	chr10	-	1583	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGTCTATAAAATTGC	NA	False	NA	0	True	AATAAA	-41	NA	128047676	128045776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128047261_128047577
transcript_147140.known	chrX	+	3258	5	FSM	ENSMUSG00000031217.9	ENSMUST00000052839.7	3258	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	5.76085931090146	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAATT	NA	False	NA	52	True	NA	NA	NA	98179735	98192597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_98180620_98188897_98189176_98190083_98190177_98190357_98190484_98190720
transcript_147143.known	chrX	-	1676	3	FSM	ENSMUSG00000034403.17	ENSMUST00000113797.4	1676	3	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	188.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTATTAAAGTTCTTCTT	NA	False	NA	-36	True	NA	NA	NA	98514278	98509751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_98511180_98511728_98511921_98514222
transcript_147148.known	chrX	-	2666	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAATAAATAAAT	NA	False	NA	NA	False	AAAACA	-20	NA	98514341	98509373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_98511921_98514222
transcript_147149.known	chrX	-	2563	2	FSM	ENSMUSG00000034403.17	ENSMUST00000036354.7	2563	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514298	98509719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_98512207_98514222
transcript_147157.known	chrX	+	1518	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGGACTTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	99537896	99559731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
transcript_147158.nic	chrX	+	927	5	ISM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	-21	10116	-21	6612	5prime_fragment	FALSE	canonical	3	367	junction_1	17.2100987794957	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGGAGTATTACCCGACCG	NA	False	NA	NA	False	NA	NA	NA	99537875	99549615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545
transcript_147159.nic	chrX	+	677	3	ISM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	48	12966	-16	3762	5prime_fragment	FALSE	canonical	3	367	junction_1	22	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATCCTGAAAGAAAAAGACT	NA	False	NA	NA	False	AATAAA	-1	NA	99537944	99546765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_99538163_99538510_99538805_99546600
transcript_147163.known	chrX	+	4983	30	FSM	ENSMUSG00000034311.4	ENSMUST00000048962.4	4983	30	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_20	20.3345386022518	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAGGAGATCCTTCTAT	NA	False	NA	18	True	AATAAA	-22	NA	99669342	99770820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99761542_99761642_99762099_99762277_99768247_99768365_99769733_99769857_99770064
transcript_147164.nic	chrX	+	4648	29	NIC	ENSMUSG00000034311.4	novel	4983	30	NA	NA	236	0	intron_retention	FALSE	canonical	3	49	junction_25	40.8997498869654	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAGGAGATCCTTCTAT	NA	False	NA	18	True	AATAAA	-22	NA	99669578	99770820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99762099_99762277_99768247_99768365_99769733_99769857_99770064
transcript_147178.known	chrX	-	1041	7	FSM	ENSMUSG00000015668.14	ENSMUST00000059099.7	1041	7	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_6	158.307366291724	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATAAACGTGGCTTGAG	NA	False	NA	-29	True	AGTAAA	-10	NA	99669541	99666513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
transcript_147179.nnic	chrX	-	1022	7	NNC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	208.783314041669	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	-4	True	AATAAA	-17	NA	99669547	99666488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669471
transcript_14718.known	chr10	+	4385	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105242.8	4385	29	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_23	64.9742001387741	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGTTGTCTTCCTCC	6660	False	NA	20	True	AATAAA	-20	NA	128068002	128088810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
transcript_147182.known	chrX	+	2495	16	FSM	ENSMUSG00000019359.15	ENSMUST00000019503.14	2495	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.573488351136175	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGGTCACAGTCTAATCA	NA	False	NA	NA	False	AATGAA	-14	NA	99773547	99782500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_99773802_99775677_99775792_99776001_99776106_99776399_99776494_99776677_99776738_99776979_99777079_99777251_99777346_99777504_99777654_99777775_99777859_99777969_99778121_99779856_99780079_99780294_99780444_99781070_99781219_99781356_99781440_99781722_99781749_99781835
transcript_147184.known	chrX	-	3250	30	FSM	ENSMUSG00000009670.12	ENSMUST00000009814.10	3250	30	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_17	8.2193472636908	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCATTGATCAGCTGATT	NA	False	NA	-5	True	AATAAA	-16	NA	100103245	99882253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_99882667_99883306_99883472_99892654_99892776_99893874_99893984_99895431_99895582_99920141_99920215_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
transcript_147185.known	chrX	-	3278	30	FSM	ENSMUSG00000009670.12	ENSMUST00000113718.8	3278	30	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	15.4932381399703	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCATTGATCAGCTGATT	NA	False	NA	-5	True	AATAAA	-16	NA	100103273	99882253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_99882667_99883306_99883472_99892654_99892776_99893874_99893984_99895431_99895582_99920141_99920217_99923584_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
transcript_147186.known	chrX	-	2591	25	FSM	ENSMUSG00000009670.12	ENSMUST00000113716.3	2591	25	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	14.9015286315047	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTGCTAAGTTTAACAT	NA	False	NA	NA	False	NA	NA	NA	100103273	99921487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_99921832_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
transcript_14719.known	chr10	+	4341	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105244.8	4341	29	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_28	54.1443059549842	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGAAAGAGTCATATAGC	6615	False	NA	-69	True	NA	NA	NA	128067957	128088721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
transcript_147199.known	chrX	-	2750	13	FSM	ENSMUSG00000031297.15	ENSMUST00000113710.8	2750	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	396.021464064765	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAAACC	NA	False	NA	NA	False	ATTAAA	-11	NA	100129626	100122827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877_100129064_100129193
transcript_147204.nnic	chrX	-	2355	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_11	409.125251083797	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAACCTGTCCTGTTCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	100128971	100122815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128759
transcript_147209.known	chrX	-	2371	13	FSM	ENSMUSG00000031297.15	ENSMUST00000101362.8	2371	13	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_12	497.596780089618	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-12	NA	100128958	100122826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128585_100128877
transcript_147210.known	chrX	-	2717	11	FSM	ENSMUSG00000031297.15	ENSMUST00000138162.2	2717	11	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_10	85.0282306060758	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAACCTGTCCTGTTCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	100129011	100122815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
transcript_147212.known	chrX	-	1114	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	False	NA	-11	True	NA	NA	NA	100266159	100141391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
transcript_147216.known	chrX	-	1002	5	FSM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	142.088880634622	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266169	100255564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265867
transcript_147219.known	chrX	-	2415	4	FSM	ENSMUSG00000046032.17	ENSMUST00000120389.8	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	23.8094285712381	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100257471_100258006_100258132_100259088_100259185_100265867
transcript_147221.known	chrX	+	3162	3	FSM	ENSMUSG00000042903.9	ENSMUST00000062000.6	3162	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTTTCTGGTTTCTGCT	3358	False	NA	21	True	AATAAA	-28	NA	100298133	100304479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100298880_100301782_100302840_100303120
transcript_147222.known	chrX	-	1670	8	FSM	ENSMUSG00000031304.19	ENSMUST00000033664.14	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	5.61702950038214	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTTACAGGGGTTGGG	NA	False	NA	NA	False	AATAAA	-26	NA	100311861	100307983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100308644_100308981_100309049_100309235_100309333_100309786_100309950_100310583_100310727_100310916_100311102_100311316_100311471_100311660
transcript_147224.known	chrX	-	558	3	FSM	ENSMUSG00000031304.19	ENSMUST00000127538.2	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGATAAGGGGAATTACCTC	NA	False	NA	NA	False	NA	NA	NA	100311764	100310801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100311102_100311316_100311471_100311660
transcript_147228.known	chrX	+	6809	45	FSM	ENSMUSG00000079487.12	ENSMUST00000087948.11	6809	45	0	0	0	0	multi-exon	FALSE	canonical	2	86	junction_14	18.8047135597997	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGAATGTACACATGG	NA	False	NA	31	True	AATACA	-22	NA	100317865	100341071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
transcript_147229.known	chrX	+	6940	46	FSM	ENSMUSG00000079487.12	ENSMUST00000117706.8	6940	46	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_43	26.9266401657779	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGAATGTACACATGG	NA	False	NA	31	True	AATACA	-22	NA	100317635	100341071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337619_100337693_100337782_100339447_100339695_100340222_100340340_100340524_100340607_100340792
transcript_147230.known	chrX	+	1585	2	FSM	ENSMUSG00000047797.15	ENSMUST00000119190.2	1585	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTTTTGAGTGTTGAA	NA	False	NA	NA	False	ATTAAA	-22	NA	100427341	100429235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100427449_100427757
transcript_147232.known	chrX	-	5564	25	FSM	ENSMUSG00000031310.17	ENSMUST00000121520.8	5564	25	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_18	23.7530334320108	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCTTTCTCTGGGGGA	NA	False	NA	-2	True	AATAAA	-14	NA	100463520	100447989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463303
transcript_147238.known	chrX	-	6057	25	FSM	ENSMUSG00000031310.17	ENSMUST00000063577.10	6057	25	0	0	0	0	multi-exon	FALSE	canonical	1	13	junction_24	27.5416036307902	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCTTTCTCTGGGGGA	NA	False	NA	-2	True	AATAAA	-14	NA	100464455	100447989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463751
transcript_147254.known	chrX	-	1859	7	FSM	ENSMUSG00000031310.17	ENSMUST00000120201.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_4	20.0637871688163	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCAGCCTCTCCTTCCC	NA	False	NA	-1	True	NA	NA	NA	100463415	100458535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
transcript_147262.known	chrX	-	1593	6	FSM	ENSMUSG00000031310.17	ENSMUST00000117637.8	1593	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	47.004680617998	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463447	100458538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100461878_100462559_100463303
transcript_147266.known	chrX	-	5178	24	FSM	ENSMUSG00000031310.17	ENSMUST00000117901.8	5178	24	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	34.4771368861147	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCTTTCTCTGGGGGA	NA	False	NA	-2	True	AATAAA	-14	NA	100463404	100447989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100449410_100449510_100449626_100452082_100452198_100452759_100452912_100453238_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
transcript_147277.known	chrX	+	2562	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	0	0	0	0	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	2315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473160	100492197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
transcript_147280.nic	chrX	+	2501	12	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	88	0	combination_of_known_junctions	FALSE	canonical	3	146	junction_9	1051.63693731909	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473248	100492197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199
transcript_14729.known	chr10	+	4573	28	FSM	ENSMUSG00000039994.16	ENSMUST00000145710.8	4573	28	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_22	47.8995863277583	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGAGACTTTTGTTG	6606	False	NA	11	True	AATAAA	-41	NA	128067948	128088801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128068045_128075702_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
transcript_1473.nic	chr1	-	2509	16	ISM	ENSMUSG00000018417.15	ENSMUST00000114537.9	4618	29	-37	28851	-37	882	5prime_fragment	FALSE	canonical	3	256	junction_6	28.2437013627227	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCAGACATATACCCATA	NA	False	NA	NA	False	NA	NA	NA	51955137	51817991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_147304.known	chrX	+	1364	5	FSM	ENSMUSG00000031311.18	ENSMUST00000126019.2	1364	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	1520.69496859166	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100473340	100486037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483287_100485121
transcript_147307.known	chrX	+	345	4	FSM	ENSMUSG00000031311.18	ENSMUST00000148312.2	345	4	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	1706.81893851952	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAATAAACGCCGCCGAT	NA	False	NA	NA	False	NA	NA	NA	100488338	100491309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100488424_100488900_100488941_100489724_100489835_100491199
transcript_147314.nnic	chrX	+	3846	25	NNC	ENSMUSG00000031314.19	novel	5954	39	NA	NA	-5141	-27948	at_least_one_novel_splicesite	FALSE	canonical	3	140	junction_1	45.6386775541195	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGCTAAAGGGGCCTC	NA	False	NA	71	True	NA	NA	NA	100571198	100606521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_100571293_100576457_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584365_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419
transcript_147323.nic	chrX	+	5356	23	NIC	ENSMUSG00000034160.14	novel	5384	22	NA	NA	-75	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	134.849288387119	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	NA	False	NA	15	True	AATAAA	-20	NA	100683590	100727957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_100683717_100683823_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
transcript_147324.known	chrX	+	3840	23	FSM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	138.801667470395	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTTAAGACTTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	100683665	100726546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
transcript_147330.known	chrX	+	5384	22	FSM	ENSMUSG00000034160.14	ENSMUST00000044475.5	5384	22	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_4	118.587682955494	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	NA	False	NA	15	True	AATAAA	-20	NA	100683669	100727957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
transcript_147335.known	chrX	+	1317	5	FSM	ENSMUSG00000034160.14	ENSMUST00000155713.8	1317	5	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	106.6123233965	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	100683667	100696483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100683717_100683823_100683929_100686581_100686763_100687552_100687797_100695745
transcript_147337.known	chrX	+	1333	4	FSM	ENSMUSG00000034160.14	ENSMUST00000155792.2	1333	4	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	90.0530707724926	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683745	100696500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100683929_100686611_100686763_100687552_100687797_100695745
transcript_147338.known	chrX	+	3087	4	FSM	ENSMUSG00000034160.14	ENSMUST00000150161.8	3087	4	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	65.0743164901996	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTCTCTATGGGCCTG	NA	False	NA	NA	False	GATAAA	-44	NA	100683713	100698192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745
transcript_147339.known	chrX	-	1190	7	FSM	ENSMUSG00000045010.15	ENSMUST00000124577.8	1190	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	111.484926734016	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCCGGCTCTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	100836869	100833658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100834130_100834212_100834255_100834440_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_147340.nnic	chrX	-	2089	7	NNC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	110.674322024377	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838072	100833953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_100834130_100834212_100834255_100834449_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_147342.known	chrX	-	1991	6	FSM	ENSMUSG00000045010.15	ENSMUST00000147742.9	1991	6	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_5	73.271003814606	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838029	100833953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_100834130_100834212_100834255_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_147343.nic	chrX	-	2284	6	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-43	0	intron_retention	FALSE	canonical	3	117	junction_2	83.8035798758024	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838072	100833953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_100834130_100834212_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_147344.nic	chrX	-	2624	5	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-43	0	intron_retention	FALSE	canonical	3	142	junction_4	69.9052930757035	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838072	100833953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_100834130_100834212_100834891_100835166_100835250_100835786_100835944_100836542
transcript_147345.nic	chrX	-	2900	4	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-43	0	intron_retention	FALSE	canonical	3	142	junction_3	69.5317673201729	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838072	100833953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_100834130_100834212_100835250_100835786_100835944_100836542
transcript_147351.known	chrX	+	1991	7	FSM	ENSMUSG00000046774.18	ENSMUST00000163399.8	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_5	79.7050116924205	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100838261	100842244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
transcript_147352.nic	chrX	+	2058	7	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-54	0	intron_retention	FALSE	canonical	3	47	junction_5	86.9329243344162	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838207	100842248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841772_100841947_100841990_100842072
transcript_147355.nic	chrX	+	2234	6	NIC	ENSMUSG00000046774.18	novel	1940	6	NA	NA	-54	0	intron_retention	FALSE	canonical	3	236	junction_4	22.2656686403081	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838207	100842248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
transcript_147356.known	chrX	+	1940	6	FSM	ENSMUSG00000046774.18	ENSMUST00000151231.10	1940	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	112.716280989039	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838261	100842248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841947_100841990_100842072
transcript_147359.nic	chrX	+	2507	5	NIC	ENSMUSG00000046774.18	novel	1940	6	NA	NA	-54	0	intron_retention	FALSE	canonical	3	236	junction_3	24.5662369930765	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838207	100842248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_100839695_100840283_100840444_100840965_100841368_100841707_100841990_100842072
transcript_147360.nic	chrX	+	2847	4	NIC	ENSMUSG00000046774.18	novel	1940	6	NA	NA	-54	0	intron_retention	FALSE	canonical	3	266	junction_2	15.121728296285	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838207	100842248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_100839695_100840283_100840444_100840965_100841990_100842072
transcript_147369.known	chrX	+	489	4	FSM	ENSMUSG00000079480.4	ENSMUST00000113627.4	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	75.7495874576225	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTTTTCTATTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	101163052	101171275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_101163171_101165273_101165348_101170622_101170743_101171098
transcript_147370.known	chrX	-	5302	2	FSM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGATTCCGGTTTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	101200697	101185321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101190440_101200513
transcript_147375.known	chrX	-	975	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	0	0	0	0	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	5187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGCTGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	101233000	101228546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
transcript_147387.known	chrX	-	576	3	FSM	ENSMUSG00000051159.17	ENSMUST00000130589.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	102	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTCAACCTGCATCCTA	NA	False	NA	NA	False	NA	NA	NA	101294381	101291426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101291615_101292168_101292294_101294118
transcript_147388.known	chrX	-	607	3	FSM	ENSMUSG00000051159.17	ENSMUST00000134887.8	607	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	97.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAGGCCTACCAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	101294552	101291319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101291615_101292168_101292294_101294365
transcript_147389.known	chrX	-	1090	3	FSM	ENSMUSG00000051159.17	ENSMUST00000101336.10	1090	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	78.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTTAACTTGCAAAGA	NA	False	NA	-23	True	AAAAAG	-20	NA	101295458	101291009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101291615_101292168_101292294_101295098
transcript_147390.known	chrX	-	901	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	38	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCCTGGGTGTGTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	101295787	101290986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101291615_101292168_101292294_101295639
transcript_147391.known	chrX	-	1936	11	FSM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	12.0747670784989	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTCCCACCGCTCTGT	NA	False	NA	-1	True	AATAAA	-15	NA	101548965	101328244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101328775_101351244_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
transcript_147396.known	chrX	-	6115	33	FSM	ENSMUSG00000034055.17	ENSMUST00000052012.14	6115	33	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_24	10.1886502418132	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGGTGTTACTGCACA	NA	False	NA	NA	False	AATAAA	-16	NA	101687852	101557580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101559822_101560382_101560584_101561048_101561103_101564359_101564531_101571672_101571724_101575682_101575722_101576008_101576125_101580789_101580892_101584717_101584848_101584977_101585057_101588279_101588360_101588913_101589071_101598489_101598630_101599131_101599224_101600701_101600879_101603170_101603341_101612895_101612975_101617073_101617219_101618570_101618681_101629682_101629818_101636232_101636312_101641007_101641116_101641791_101641888_101652647_101652771_101653757_101653812_101659516_101659664_101660922_101661022_101664943_101665025_101669193_101669277_101680148_101680318_101682686_101682735_101685826_101685986_101687452
transcript_1474.nic	chr1	-	1326	10	ISM	ENSMUSG00000018417.15	ENSMUST00000114537.9	4618	29	-238	47421	-108	0	5prime_fragment	FALSE	canonical	3	272	junction_4	20.3239201040316	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAGATAAAAATGGTAAG	NA	False	NA	NA	False	NA	NA	NA	51955338	51836561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_147406.known	chrX	-	337	3	FSM	ENSMUSG00000081443.3	ENSMUST00000122154.3	337	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	7	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTCTTTGACTGTGTG	3627	False	NA	NA	False	AATAAA	-16	NA	101730578	101729897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101730044_101730198_101730354_101730542
transcript_147409.known	chrX	+	1611	9	FSM	ENSMUSG00000067562.12	ENSMUST00000118218.8	1611	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	65.1257197656963	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846568	101853548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_101846761_101846861_101847052_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_147411.nnic	chrX	+	1559	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	56.4623768539724	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846511	101853548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_101846789_101848252_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_147412.nnic	chrX	+	1502	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	44.698993277254	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846515	101853548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_101846789_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_147413.nnic	chrX	+	1430	8	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	52.0670682085782	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846559	101853548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_101846761_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_147416.known	chrX	-	1611	9	FSM	ENSMUSG00000067561.13	ENSMUST00000120314.8	1611	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	64.8072864344743	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898222	101891244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101897739_101897930_101898030
transcript_147418.nnic	chrX	-	1477	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_7	44.1518714790442	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898250	101891244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101898002
transcript_147420.nnic	chrX	-	1502	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	56.3197866415254	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898222	101891244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896539_101898002
transcript_14743.nic	chr10	+	1790	13	ISM	ENSMUSG00000039994.16	ENSMUST00000105244.8	4341	29	-58	8023	-34	899	5prime_fragment	FALSE	canonical	3	289	junction_8	43.2845879679541	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAGGGCAGCCCCAAGGT	6557	False	NA	18	True	NA	NA	NA	128067899	128080698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528
transcript_147432.known	chrX	-	373	3	FSM	ENSMUSG00000031325.16	ENSMUST00000182224.8	373	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAAAATCCCGCAGTCAT	NA	False	NA	NA	False	AATGAA	-44	NA	102296653	102273699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_102273781_102277627_102277876_102296609
transcript_147434.known	chrX	-	2465	1	FSM	ENSMUSG00000082229.2	ENSMUST00000121720.2	2465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGTTAAATGTTTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	102230246	102227781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_102227800_102230200
transcript_147435.known	chrX	+	1963	3	FSM	ENSMUSG00000031326.3	ENSMUST00000033689.3	1963	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTTCCA	NA	False	NA	NA	False	NA	NA	NA	102365003	102374198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_102365662_102371614_102371761_102373039
transcript_147437.known	chrX	+	7375	6	FSM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	5.41848687365763	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTGAACCGTGTGGCTT	NA	False	NA	8	True	AATAAA	-18	NA	102400081	102439698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_102400496_102409819_102409875_102417204_102417361_102430860_102430918_102431592_102431653_102433065
transcript_147443.known	chrX	+	812	7	FSM	ENSMUSG00000031329.5	ENSMUST00000033691.5	812	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	4.2687494916219	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTGCGTTTCTGTGT	NA	False	NA	1	True	AATAAA	-10	NA	102458072	102468186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_102458253_102459640_102459677_102460356_102460394_102461814_102461897_102464105_102464207_102465593_102465653_102467869
transcript_147448.nnic	chrX	+	1591	2	NIC	ENSMUSG00000085715.3	novel	4306	4	NA	NA	-14	195	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCGAGGCCCCGTTGGGCA	NA	False	NA	NA	False	AAAAAG	-24	NA	102491313	102526207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_102491578_102524880
transcript_147451.nnic	chrX	-	2308	6	NNC	ENSMUSG00000056537.12	novel	7429	5	NA	NA	-2	-5215	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	85.0858390097906	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTCATTGCTTTCTTAG	2371	False	NA	NA	False	TATAAA	-14	NA	103024892	103005983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_103007650_103008856_103008941_103010096_103010287_103022109_103022202_103022878_103022941_103024678
transcript_147452.known	chrX	-	7439	5	FSM	ENSMUSG00000056537.12	ENSMUST00000121153.8	7439	5	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_4	53.7261575026541	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCTTTTTCATCCTT	2373	False	NA	-1	True	AATAAA	-16	NA	103024890	103000768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024668
transcript_147453.known	chrX	-	7429	5	FSM	ENSMUSG00000056537.12	ENSMUST00000070705.6	7429	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	35.6300435026397	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCTTTTTCATCCTT	2373	False	NA	-1	True	AATAAA	-16	NA	103024890	103000768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024678
transcript_147455.nnic	chrX	-	2230	5	NNC	ENSMUSG00000046449.16	novel	10891	5	NA	NA	-430	-2815	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	8.8034084308295	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAGAAAAACAGCAACACAG	NA	False	NA	NA	False	AAGAAA	-3	NA	103245221	103130134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_103131837_103132486_103132613_103143231_103143288_103244238_103244478_103245114
transcript_147457.known	chrX	-	5211	4	FSM	ENSMUSG00000046449.16	ENSMUST00000056502.7	5211	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	9.03081145609604	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAGAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	103244750	103127319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_103131837_103132486_103132613_103143231_103143288_103244238
transcript_147461.known	chrX	-	11476	3	FSM	ENSMUSG00000046449.16	ENSMUST00000118314.8	11476	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	11.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGCTTTAGAATCATATG	NA	False	NA	-11	True	AATAAA	-19	NA	103244791	103121039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_103131837_103132486_103132613_103244238
transcript_147463.known	chrX	-	5667	16	FSM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_7	23.4516997725585	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTCTGGTGGAAATCA	9861	False	NA	-2	True	AATAAA	-24	NA	103457452	103324262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
transcript_147476.known	chrX	-	5509	12	FSM	ENSMUSG00000033906.6	ENSMUST00000042070.6	5509	12	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_8	6.78841989185253	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGTGTCTTTTCTATA	NA	False	NA	NA	False	ATTAAA	-15	NA	103714670	103580574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_103584775_103588433_103588511_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103631906_103632028_103641697_103641793_103676189_103676217_103714269
transcript_147486.known	chrX	-	2316	1	FSM	ENSMUSG00000031224.7	ENSMUST00000033575.7	2316	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATGCTTATGTGATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	103900873	103898557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_103898600_103900900
transcript_147492.known	chrX	-	1691	7	FSM	ENSMUSG00000087174.8	ENSMUST00000156974.8	1691	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	48.3482735529983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTTTGTTTGGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	104113652	104082413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_104083419_104086730_104086911_104087607_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
transcript_147493.known	chrX	-	3287	6	FSM	ENSMUSG00000087174.8	ENSMUST00000140954.8	3287	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	25.9183332797462	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAGAGAAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	104113730	104085006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113605
transcript_147494.known	chrX	-	531	6	FSM	ENSMUSG00000087174.8	ENSMUST00000146227.8	531	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	40.4899987651272	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCAGTCTACTACTGAAC	NA	False	NA	NA	False	NA	NA	NA	104113714	104087681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113670
transcript_147495.known	chrX	-	709	6	FSM	ENSMUSG00000087174.8	ENSMUST00000144366.8	709	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	33.8904116233486	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113661	104087408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112176_104112235_104113216_104113282_104113605
transcript_147499.known	chrX	-	3732	5	FSM	ENSMUSG00000087174.8	ENSMUST00000138460.8	3732	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	38.5940409908058	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTGAAAATAAAGACA	NA	False	NA	NA	False	NA	NA	NA	104113730	104084459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
transcript_147500.nic	chrX	-	655	5	NIC	ENSMUSG00000087174.8	novel	709	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	44.3790491110389	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113709	104087408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_104087718_104110364_104110484_104112176_104112235_104113216_104113282_104113605
transcript_147503.known	chrX	+	2638	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	0	0	0	0	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATAGCTCTTTCCAG	NA	False	NA	NA	False	NA	NA	NA	104123361	104128792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
transcript_147507.known	chrX	+	1239	6	FSM	ENSMUSG00000031226.14	ENSMUST00000119477.2	1239	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	564.946723151838	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGCCAGAGTTCCTTTT	NA	False	NA	5	True	AATAAA	-20	NA	104123366	104160696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104159919
transcript_147508.known	chrX	+	3550	1	FSM	ENSMUSG00000031227.9	ENSMUST00000033578.7	3550	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTATTCAATAAATATAT	NA	False	NA	NA	False	AATAAA	-32	NA	104163983	104167533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_104164000_104167500
transcript_147509.known	chrX	-	10275	35	FSM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_34	46.470253163349	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104973009	104841220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972705
transcript_147512.known	chrX	-	1920	11	FSM	ENSMUSG00000031229.17	ENSMUST00000150914.8	1920	11	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_8	93.3439339218141	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAGAAAAAAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	104972976	104920565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104954179_104954250_104955075_104955261_104972564
transcript_147542.known	chrX	-	1838	6	FSM	ENSMUSG00000031229.17	ENSMUST00000123174.2	1838	6	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_3	21.4979068748564	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGATTGTTTTCCTTT	NA	False	NA	-6	True	AATAAA	-18	NA	104918870	104895042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165
transcript_147546.known	chrX	-	520	3	FSM	ENSMUSG00000031229.17	ENSMUST00000126345.3	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	15	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACTTGTCATGAACCAAAG	NA	False	NA	NA	False	NA	NA	NA	104972952	104943511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_104943600_104955075_104955261_104972705
transcript_147549.known	chrX	-	1608	11	FSM	ENSMUSG00000031232.18	ENSMUST00000113566.10	1608	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	64.6371410258839	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAGAAAAAAAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	105055392	105014083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_105014633_105015041_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
transcript_147555.known	chrX	-	4524	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	105055505	105011689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
transcript_147569.known	chrX	+	1001	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	0	0	0	0	multi-exon	FALSE	canonical	3	7724	junction_1	851.5	1303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGGGTTTAAAGTGATAA	NA	False	NA	NA	False	AATAAA	-14	NA	105059305	105066056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_105059477_105063184_105063310_105065351
transcript_147572.known	chrX	+	4866	23	FSM	ENSMUSG00000033792.13	ENSMUST00000055941.7	4866	23	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_4	14.4839609212032	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTGCCCAAAGACAG	NA	False	NA	NA	False	NA	NA	NA	105070927	105168532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_105070986_105113375_105113514_105128719_105129210_105129694_105130421_105131940_105132124_105135689_105135854_105138458_105138621_105140382_105140460_105140995_105141222_105142391_105142626_105144132_105144225_105145465_105145594_105145952_105146108_105146317_105146453_105148752_105148948_105150789_105150973_105153366_105153584_105158695_105158843_105161857_105162001_105163840_105164045_105165195_105165314_105166948_105167052_105167944
transcript_147573.known	chrX	+	4900	23	FSM	ENSMUSG00000033792.13	ENSMUST00000113557.8	4900	23	0	0	0	0	multi-exon	TRUE	canonical	2	41	junction_4	12.997138909572	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTGCC	NA	False	NA	NA	False	NA	NA	NA	105070881	105168523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_105070986_105113375_105113514_105128719_105129210_105129694_105130421_105131943_105132124_105135689_105135854_105138458_105138621_105140382_105140460_105140995_105141222_105142391_105142626_105144132_105144225_105145465_105145594_105145952_105146108_105146317_105146453_105148752_105148948_105150789_105150973_105153366_105153584_105158695_105158843_105161857_105162001_105163840_105164045_105165195_105165314_105166948_105167052_105167944
transcript_147577.known	chrX	+	1825	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	0	0	0	0	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	2275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	105230705	105247305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
transcript_14758.known	chr10	+	1746	14	FSM	ENSMUSG00000039994.16	ENSMUST00000105243.9	1746	14	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	91.5603076711104	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAGGTTCAGGACCA	6617	False	NA	NA	False	AAAAAG	-10	NA	128067959	128081978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128068045_128075710_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954
transcript_147586.known	chrX	-	2512	8	FSM	ENSMUSG00000047242.15	ENSMUST00000113495.9	2512	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	5.73211504221111	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATTAACCTTTCATTTC	NA	False	NA	NA	False	AATAAA	-12	NA	105264764	105250488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_105252264_105253312_105253424_105259732_105259803_105261702_105261838_105261915_105262053_105262501_105262584_105263184_105263305_105264682
transcript_147587.known	chrX	-	1744	6	FSM	ENSMUSG00000031239.6	ENSMUST00000033591.6	1744	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	8.06473806146238	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCATTCCCATCTCTAC	NA	False	NA	NA	False	TATAAA	-18	NA	106446982	106440704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_106441586_106441701_106441853_106442376_106442488_106442701_106442900_106443172_106443305_106446711
transcript_147588.known	chrX	-	5842	8	FSM	ENSMUSG00000031242.8	ENSMUST00000120722.2	5842	8	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_6	7.21958786771044	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTGTACTCTGTAACTA	NA	False	NA	NA	False	AATAAA	-25	NA	106859940	106826356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_106831460_106831871_106831945_106834341_106834386_106836504_106836613_106836698_106836768_106837113_106837261_106851397_106851496_106859740
transcript_147595.known	chrX	+	546	3	FSM	ENSMUSG00000086629.9	ENSMUST00000131640.8	546	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGTCTCCAATCTCTAT	NA	False	NA	NA	False	AATAAA	-12	NA	107878262	107930289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_107878380_107879871_107879962_107929950
transcript_147596.known	chrX	-	1934	6	FSM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	41.3424721079908	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTTTGCAATATTTCA	NA	False	NA	1	True	AATAAA	-19	NA	108057010	108048139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_108049678_108051767_108051903_108054159_108054214_108054462_108054493_108055027_108055052_108056857
transcript_1476.known	chr1	+	2982	24	FSM	ENSMUSG00000062939.12	ENSMUST00000027277.7	2982	24	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_15	7.16402480577569	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATTTGTTTCTGGTTTT	NA	False	NA	NA	False	AATATA	-18	NA	52047401	52146343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_52047888_52050941_52051071_52052948_52053094_52104473_52104573_52107904_52107998_52111019_52111099_52113835_52113922_52115691_52115844_52117652_52117812_52118899_52118993_52121676_52121737_52122020_52122039_52122136_52122231_52123237_52123283_52135943_52136028_52137545_52137645_52139482_52139619_52141010_52141061_52141275_52141371_52141639_52141777_52142006_52142199_52144364_52144432_52144826_52144936_52146068
transcript_147601.known	chrX	+	2882	4	FSM	ENSMUSG00000031246.15	ENSMUST00000033598.9	2882	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	2.86744175568088	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGATTACTTTTAATTT	NA	False	NA	NA	False	AATAAA	-18	NA	108138970	108206077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_108139244_108193520_108193707_108197911_108197993_108203735
transcript_147603.nic	chrX	-	4328	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	-102	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	71.6464486948656	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110373254	110297889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
transcript_147604.nic	chrX	-	4343	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	-102	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	62.1628144548264	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110373254	110297889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
transcript_147606.nic	chrX	-	3900	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	-51	-392	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	62.1628144548264	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTGTGTAATGTGTATTA	NA	False	NA	NA	False	AATAAA	-38	NA	110373203	110298281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
transcript_147607.known	chrX	-	4135	23	FSM	ENSMUSG00000025665.17	ENSMUST00000113428.9	4135	23	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_4	54.455987232393	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110372892	110297889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
transcript_147608.known	chrX	-	4151	23	FSM	ENSMUSG00000025665.17	ENSMUST00000096348.10	4151	23	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_4	39.3304500040447	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTAGTCTTGGTGTAGT	NA	False	NA	-6	True	ATTAAA	-31	NA	110372892	110297888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
transcript_14761.nnic	chr10	+	3817	25	NNC	ENSMUSG00000040033.17	novel	4394	24	NA	NA	-66	464	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	20.4530288438874	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACTTCTGTTCCTTA	2295	False	NA	NA	False	NA	NA	NA	128106361	128128130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117578_128117970_128117989_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126537_128126608_128126900_128127096
transcript_147611.known	chrX	-	2410	22	FSM	ENSMUSG00000025665.17	ENSMUST00000137712.9	2410	22	0	0	0	0	multi-exon	FALSE	canonical	2	33	junction_21	75.5102672059551	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTTGTGCTCTTCAGTC	NA	False	NA	NA	False	AAAAAG	-22	NA	110372802	110299476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110372546
transcript_147617.known	chrX	-	9385	9	FSM	ENSMUSG00000034551.13	ENSMUST00000038472.7	9385	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	2.9474565306379	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTCTCTTTTAAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	110606776	110479629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_110487096_110492491_110492615_110498891_110498976_110502657_110502738_110510314_110510523_110531997_110532145_110559533_110559588_110569330_110570441_110606663
transcript_147620.known	chrX	+	1359	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGCTTTGTTTATTTAT	NA	False	NA	7	True	AATAAA	-20	NA	111221030	111282452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
transcript_147626.known	chrX	+	4330	9	FSM	ENSMUSG00000025529.15	ENSMUST00000113409.8	4330	9	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_6	4.35889894354067	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTCAAAGTTTTATAATTT	NA	False	NA	NA	False	AATAAA	-14	NA	111510222	111544759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_111510603_111513964_111514070_111524589_111525133_111533648_111533805_111534435_111534574_111536866_111537002_111537800_111537846_111541522_111541667_111542075
transcript_147629.known	chrX	-	3886	17	FSM	ENSMUSG00000034607.7	ENSMUST00000039887.4	3886	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	3.09989919190931	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTATTGTCTTTGTGA	NA	False	NA	NA	False	AATAAA	-11	NA	111608348	111548127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_111550139_111552674_111552790_111554029_111554113_111554943_111555073_111556408_111556529_111556815_111556969_111557756_111557871_111558714_111558808_111565785_111565861_111567148_111567177_111571447_111571579_111573845_111574020_111578730_111578833_111587067_111587149_111593090_111593166_111607866_111608205_111608284
transcript_147634.known	chrX	-	4868	15	FSM	ENSMUSG00000025531.15	ENSMUST00000026607.15	4868	15	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_7	16.3001189428489	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACTGTAATGGCTTATT	NA	False	NA	-9	True	AATAAA	-16	NA	112095214	111950289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
transcript_147637.known	chrX	-	4749	14	FSM	ENSMUSG00000025531.15	ENSMUST00000113388.3	4749	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	49.178096822677	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCACTGTAATGGCTTA	NA	False	NA	-11	True	AATAAA	-14	NA	112095214	111950291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
transcript_147647.known	chrX	+	2520	13	FSM	ENSMUSG00000025592.18	ENSMUST00000067219.5	2520	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.65148371670111	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATTTCTCTGAGTTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	112207953	112745590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_112208633_112362154_112362194_112465944_112466058_112549590_112549723_112614405_112614565_112633941_112634115_112659967_112660104_112662516_112662601_112724539_112724689_112724813_112724962_112727319_112727467_112729645_112729712_112745095
transcript_147648.known	chrX	+	4451	8	FSM	ENSMUSG00000025592.18	ENSMUST00000146539.8	4451	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.01018678652935	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTCAG	NA	False	NA	NA	False	NA	NA	NA	112207948	112665531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_112208633_112362154_112362194_112465944_112466058_112549590_112549723_112614405_112614565_112633941_112634115_112659967_112660104_112662516
transcript_147650.known	chrX	+	743	2	FSM	ENSMUSG00000050435.3	ENSMUST00000059509.3	743	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCAGTCATTTTTTTTTT	NA	False	NA	1	True	AATAAA	-16	NA	113814708	113815638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_113814900_113815086
transcript_147651.known	chrX	-	2837	1	FSM	ENSMUSG00000055733.7	ENSMUST00000079490.6	2837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTTACCATTTTCT	NA	False	NA	NA	False	AATAAA	-11	NA	121307098	121304261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_121304300_121307100
transcript_147652.nic	chrX	+	3919	28	NIC	ENSMUSG00000034480.19	novel	8439	27	NA	NA	-93	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_24	24.3627140962256	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	128650397	129361946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079812_129159827_129159991_129190602_129190739_129228714_129228811_129361619
transcript_147656.known	chrX	+	3742	27	FSM	ENSMUSG00000034480.19	ENSMUST00000037854.15	3742	27	0	0	0	0	multi-exon	FALSE	canonical	2	27	junction_4	22.6520176877347	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	128650553	129361946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079810_129159825_129159991_129190602_129190739_129228714_129228811_129361619
transcript_147657.known	chrX	+	8196	27	FSM	ENSMUSG00000034480.19	ENSMUST00000113320.3	8196	27	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	24.898729798167	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAGTCTCTGATTCCGA	NA	False	NA	NA	False	AATAAA	-19	NA	128650724	129366583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_128650866_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079810_129159825_129159991_129190602_129190739_129228714_129228811_129361619
transcript_147660.known	chrX	+	4208	26	FSM	ENSMUSG00000034480.19	ENSMUST00000143668.8	4208	26	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	25.3917781968889	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAGAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	128650544	129229606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_128650866_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079810_129159825_129159991_129190602_129190739_129228714
transcript_147661.nic	chrX	+	3244	25	NIC	ENSMUSG00000034480.19	novel	8439	27	NA	NA	24	-69288	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_24	24.3810889830623	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGTAACATAGTTTAAAAC	NA	False	NA	NA	False	NA	NA	NA	128650514	129159991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079812_129159827
transcript_147679.known	chrX	+	4480	23	FSM	ENSMUSG00000034480.19	ENSMUST00000127577.8	4480	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	24.1433391734922	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAGAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	128650490	129081220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_128650866_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684
transcript_147681.known	chrX	-	10289	6	FSM	ENSMUSG00000051323.17	ENSMUST00000149154.8	10289	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	6.79411510058521	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGAGAGTGTTTT	NA	False	NA	NA	False	ATTAAA	-37	NA	132589736	132483608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_132489327_132526017_132526191_132533643_132533703_132581829_132582158_132582840_132582982_132585866
transcript_147682.known	chrX	-	7035	5	FSM	ENSMUSG00000051323.17	ENSMUST00000060309.10	7035	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	7.29297607290741	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAAGTTTTGGTGAAAT	NA	False	NA	NA	False	ATTAAA	-18	NA	132586642	132483627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_132489327_132526017_132526191_132533643_132533703_132581829_132582158_132585866
transcript_147685.nic	chrX	-	3923	2	ISM	ENSMUSG00000051323.17	ENSMUST00000167944.8	8407	5	-1723	98481	0	-36	5prime_fragment	FALSE	canonical	3	21	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTAAGAATGACATCCGC	NA	False	NA	NA	False	AAGAAA	-20	NA	132589736	132582104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_132582158_132585866
transcript_147686.known	chrX	-	1765	8	FSM	ENSMUSG00000067377.13	ENSMUST00000087557.12	1765	8	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	4.33777898591114	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCGTTTTAATTTTTAGA	NA	False	NA	4	True	AATAAA	-42	NA	132799178	132791816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_132792673_132793410_132793516_132795247_132795332_132795676_132795812_132796183_132796283_132797431_132797507_132797872_132798062_132798956
transcript_147688.known	chrX	-	3753	17	FSM	ENSMUSG00000031255.15	ENSMUST00000033608.15	3753	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.484122918275927	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTGCAGATGCTTTTT	NA	False	NA	NA	False	AATAAA	-29	NA	132882561	132837133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_132838800_132841071_132841281_132841990_132842091_132844308_132844418_132848485_132848648_132849439_132849543_132849795_132849975_132851020_132851117_132851859_132851964_132852075_132852167_132852497_132852574_132853015_132853118_132861415_132861522_132861757_132861868_132862431_132862648_132862873_132863047_132882410
transcript_147700.known	chrX	+	4502	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCCTACTTAGAAATCTT	NA	False	NA	12	True	AATAAA	-12	NA	132959945	132987568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
transcript_147702.known	chrX	+	3661	14	FSM	ENSMUSG00000031256.12	ENSMUST00000113287.8	3661	14	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	147.051615138335	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTCATGATCTGCCTTTA	NA	False	NA	NA	False	AATACA	-13	NA	132959935	132986795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
transcript_14772.known	chr10	+	4394	24	FSM	ENSMUSG00000040033.17	ENSMUST00000085708.3	4394	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	16.4593788801125	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATACTGTGAGAGTGTG	2378	False	NA	NA	False	AATAAA	-20	NA	128106444	128128718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117578_128117970_128117989_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126900_128127096
transcript_147720.known	chrX	+	2717	11	FSM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	82.5556781814552	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTGCTTTTTAA	NA	False	NA	4	True	AATAAA	-19	NA	132959963	132976612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261
transcript_147733.known	chrX	-	3128	14	FSM	ENSMUSG00000067369.13	ENSMUST00000113252.8	3128	14	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_12	15.8476474277441	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTCACTATCTCTAGT	NA	False	NA	-10	True	AATAAA	-18	NA	133177669	133123848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133171258_133171335_133177594
transcript_147737.known	chrX	-	3119	13	FSM	ENSMUSG00000067369.13	ENSMUST00000087541.12	3119	13	0	0	0	0	multi-exon	TRUE	canonical	1	13	junction_4	11.7686022959398	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTATCTCTAGTCCATG	NA	False	NA	-5	True	AATAAA	-23	NA	133177731	133123843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
transcript_147741.known	chrX	+	3227	23	FSM	ENSMUSG00000031262.13	ENSMUST00000081064.12	3227	23	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_9	42.2862392872416	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTTCCGAATTTTTTTT	NA	False	NA	6	True	AATAAA	-17	NA	133208832	133263388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133208978_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
transcript_147743.nic	chrX	+	3206	23	NIC	ENSMUSG00000031262.13	novel	3227	23	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	59.0381057782539	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTATTTCCGAATTTTTT	NA	False	NA	4	True	AATAAA	-15	NA	133208920	133263386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_133209047_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
transcript_147749.known	chrX	+	3085	22	FSM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	51.4515821537341	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208903	133263385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
transcript_147762.known	chrX	-	1933	13	FSM	ENSMUSG00000009596.10	ENSMUST00000009740.9	1933	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.16999866773227	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACGTCTCTAATTTCT	NA	False	NA	NA	False	NA	NA	NA	133377239	133360866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371128_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
transcript_147764.known	chrX	-	1421	2	FSM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	0	0	0	0	multi-exon	FALSE	canonical	3	1175	junction_1	0	933	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGACGAAGAGGCTTT	NA	False	NA	-10	True	AATAAA	-16	NA	133442614	133438004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133439017_133442205
transcript_147768.known	chrX	-	2540	19	FSM	ENSMUSG00000031264.14	ENSMUST00000033617.13	2540	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	2.60104442460436	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATTTTAATTTATTAC	NA	False	NA	NA	False	AATAAA	-16	NA	133483889	133443084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133443557_133446230_133446389_133447460_133447580_133448310_133448376_133450163_133450381_133451055_133451228_133451950_133452026_133455147_133455276_133455437_133455518_133456297_133456353_133457086_133457150_133457536_133457725_133459435_133459504_133459946_133460076_133466345_133466428_133469653_133469723_133473957_133474057_133474665_133474837_133483759
transcript_147769.known	chrX	+	483	5	FSM	ENSMUSG00000079435.10	ENSMUST00000113211.8	483	5	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_4	1336.12412877696	1530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAAGTTTTTCTCCTGTT	NA	False	NA	75	True	ATTAAA	-16	NA	133486402	133488805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133486469_133486826_133486933_133487259_133487328_133488199_133488323_133488685
transcript_147772.known	chrX	+	770	4	FSM	ENSMUSG00000079435.10	ENSMUST00000149857.3	770	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	5569.45900025806	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTAAAAGCTTTCAGAAA	NA	False	NA	52	True	NA	NA	NA	133486449	133488782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133486933_133487260_133487328_133488199_133488323_133488685
transcript_147773.known	chrX	+	812	4	FSM	ENSMUSG00000079435.10	ENSMUST00000172023.8	812	4	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_3	1438.31622237794	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	False	NA	81	True	ATTAAA	-22	NA	133486437	133488811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133486933_133487259_133487328_133488199_133488323_133488685
transcript_147775.nnic	chrX	-	2217	8	NNC	ENSMUSG00000031266.8	novel	3172	7	NA	NA	-13	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	64.1131015933434	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTACACTGCGTTTTCT	NA	False	NA	NA	False	AATAAA	-2	NA	133501767	133488911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_133489309_133490142_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
transcript_147777.known	chrX	-	3015	7	FSM	ENSMUSG00000031266.8	ENSMUST00000239113.2	3015	7	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	18.580904176062	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAATTTCAAATA	NA	False	NA	NA	False	NA	NA	NA	133501754	133488934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
transcript_147780.known	chrX	+	2364	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133502034	133507803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
transcript_147781.known	chrX	+	2426	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_2	148.5	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133501927	133507803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133502083_133503440_133503512_133505603
transcript_147783.known	chrX	+	2315	2	FSM	ENSMUSG00000045427.14	ENSMUST00000113203.2	2315	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	133501973	133507809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133502083_133505603
transcript_147784.known	chrX	+	7996	6	FSM	ENSMUSG00000049804.10	ENSMUST00000124226.3	7996	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.44948974278318	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGATATTGTCTTCATT	NA	False	NA	NA	False	AATAAA	-24	NA	133587267	133597506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133587387_133587896_133587975_133588765_133588856_133589198_133589282_133589568_133589654_133589965
transcript_147794.known	chrX	+	2303	6	FSM	ENSMUSG00000033460.15	ENSMUST00000035748.14	2303	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	61.3286230075321	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618737	133622666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620782
transcript_147795.nnic	chrX	+	2315	6	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	59.4151495832502	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618684	133622666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620823
transcript_147796.known	chrX	+	2413	6	FSM	ENSMUSG00000033460.15	ENSMUST00000113199.8	2413	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	37.1020215082683	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGCACTGTCTTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	133618736	133622659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620782
transcript_147797.nnic	chrX	+	2431	6	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	30.440762145518	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618684	133622666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620823
transcript_147799.known	chrX	+	2228	5	FSM	ENSMUSG00000033460.15	ENSMUST00000113201.8	2228	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	55.9955355363265	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618711	133622657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620782
transcript_147800.nnic	chrX	+	2227	5	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	54.8925085963467	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618680	133622666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620823
transcript_147802.nnic	chrX	+	2343	5	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	26.9664142963057	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618680	133622666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_133618800_133619474_133619568_133619668_133619858_133620375_133620475_133620823
transcript_147803.known	chrX	+	2179	5	FSM	ENSMUSG00000033460.15	ENSMUST00000113197.2	2179	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	75.7310207246674	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618768	133622666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133618800_133619118_133619211_133619668_133619742_133620375_133620475_133620782
transcript_147804.nnic	chrX	+	2222	5	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	73.5272058492637	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618684	133622666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_133618800_133619118_133619211_133619668_133619742_133620375_133620475_133620823
transcript_147805.known	chrX	+	2085	4	FSM	ENSMUSG00000033460.15	ENSMUST00000113198.8	2085	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	26.0895892391327	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618761	133622657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133618800_133619668_133619742_133620375_133620475_133620782
transcript_147806.nnic	chrX	+	2175	4	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	-72	0	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_3	34.8839345385363	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618639	133622666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_133618800_133619668_133619742_133620375_133620475_133620823
transcript_147808.known	chrX	+	2253	4	FSM	ENSMUSG00000033460.15	ENSMUST00000051256.10	2253	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	53.7463177033243	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618718	133622666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133618800_133619668_133619858_133620375_133620475_133620782
transcript_147811.known	chrX	-	2024	4	FSM	ENSMUSG00000050394.15	ENSMUST00000052431.12	2024	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGGGGCACTGGCCTCC	NA	False	NA	NA	False	AATAAA	-28	NA	133652166	133649211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133650975_133651299_133651380_133651689_133651783_133652078
transcript_147813.known	chrX	+	3327	5	FSM	ENSMUSG00000049047.12	ENSMUST00000081834.10	3327	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	4.81534007106456	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAATAATAAAGGTTAACA	NA	False	NA	NA	False	NA	NA	NA	133657343	133662174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133657480_133658012_133658092_133658480_133658543_133658825_133658896_133659194
transcript_147815.known	chrX	+	2024	5	FSM	ENSMUSG00000049047.12	ENSMUST00000086880.11	2024	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.24568837309472	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTAGTCTGTCTTTTGG	NA	False	NA	NA	False	AATAAA	-41	NA	133657355	133660855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_133657480_133657984_133658092_133658480_133658543_133658825_133658896_133659194
transcript_147817.known	chrX	-	3666	6	FSM	ENSMUSG00000033436.14	ENSMUST00000113193.9	3666	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	6.60302960768767	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTCTGGTGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	133709970	133704895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983_133709249_133709667
transcript_147819.known	chrX	-	3384	6	FSM	ENSMUSG00000033436.14	ENSMUST00000035559.11	3384	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	12.1556571192182	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTCTGGTGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	133709745	133704895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983_133709192_133709667
transcript_147820.known	chrX	-	2375	22	FSM	ENSMUSG00000009941.11	ENSMUST00000113189.8	2375	22	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_3	7.21770310384392	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATGTCTTGAAGTGCT	NA	False	NA	-2	True	AATAAA	-18	NA	133865503	133845276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133845538_133845640_133845702_133850435_133850616_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
transcript_147821.known	chrX	-	2393	22	FSM	ENSMUSG00000009941.11	ENSMUST00000010085.4	2393	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.66632652193486	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATGTCTTGAAGTGCT	NA	False	NA	-2	True	AATAAA	-18	NA	133865503	133845276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_133845538_133845640_133845702_133850435_133850634_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
transcript_147835.known	chrX	-	3698	5	FSM	ENSMUSG00000079432.2	ENSMUST00000113183.2	3698	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	56.4933624419719	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134078381	134068372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_134070935_134071511_134072097_134073399_134073700_134077932_134078052_134078249
transcript_147841.known	chrX	+	3836	5	FSM	ENSMUSG00000094004.8	ENSMUST00000180198.2	3836	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	73.5272058492637	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTTTATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-10	NA	134274032	134284142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134274160_134274357_134274477_134278675_134278976_134280276_134280862_134281437
transcript_147846.known	chrX	+	3519	5	FSM	ENSMUSG00000096508.8	ENSMUST00000179953.2	3519	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	73.4825659595526	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAATGGAGAATTAATGA	NA	False	NA	NA	False	AATAAA	-21	NA	134334583	134344429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134334711_134334908_134335028_134339279_134339580_134340880_134341466_134342041
transcript_147849.known	chrX	+	3698	5	FSM	ENSMUSG00000054994.3	ENSMUST00000068340.3	3698	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	53.6516542149448	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134395336	134405343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134395469_134395666_134395786_134400016_134400317_134401619_134402205_134402781
transcript_147855.known	chrX	-	2233	23	FSM	ENSMUSG00000031410.15	ENSMUST00000113163.8	2233	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	1.12540167301272	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTGGATTCTTCTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	134499526	134480303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_134480575_134480703_134480765_134483832_134484016_134484471_134484539_134485101_134485145_134485235_134485352_134485452_134485512_134485645_134485754_134485889_134485946_134486029_134486099_134486514_134486552_134487985_134488096_134488266_134488375_134488481_134488571_134488715_134488786_134488930_134489012_134489121_134489227_134489324_134489409_134489679_134489831_134490065_134490220_134493014_134493045_134494561_134494643_134499426
transcript_147856.known	chrX	-	544	5	FSM	ENSMUSG00000060726.11	ENSMUST00000113154.8	544	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	4.9180788932265	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGCTTGTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-26	NA	134626010	134619415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_134619503_134620414_134620520_134621315_134621402_134624106_134624186_134625823
transcript_147863.known	chrX	+	5843	11	FSM	ENSMUSG00000043384.16	ENSMUST00000113144.8	5843	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	58.361288539579	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCCCTTCACTGTAAAAT	NA	False	NA	18	True	AATAAA	-25	NA	134643481	134704223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134643728_134645247_134645325_134649404_134649532_134652693_134652767_134696890_134697086_134697697_134697787_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
transcript_147878.known	chrX	+	3814	7	FSM	ENSMUSG00000072966.12	ENSMUST00000173804.8	3814	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	54.6669207311169	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCCTTCTTCACTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	134739782	134745479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134740012_134740493_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
transcript_147880.nnic	chrX	+	2002	7	NIC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	11	1171	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	54.6669207311169	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGTTAAAAATGATGAAAC	NA	False	NA	NA	False	NA	NA	NA	134739793	134743716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_134740012_134740531_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
transcript_147881.nnic	chrX	+	3765	7	NIC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	54.6669207311169	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCCTTCTTCACTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	134739793	134745479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_134740012_134740531_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
transcript_147884.known	chrX	+	837	6	FSM	ENSMUSG00000043384.16	ENSMUST00000149595.8	837	6	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_5	28.5629130167075	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATAGATTCTTCTCTC	NA	False	NA	NA	False	TTTAAA	-17	NA	134643481	134662739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134649404_134649532_134652693_134652767_134662477
transcript_147903.known	chrX	+	2779	4	FSM	ENSMUSG00000072969.3	ENSMUST00000096321.3	2779	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_3	8.05536398239638	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643481	134648071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134645667
transcript_147908.nic	chrX	+	2849	4	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	31.6789449880446	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643440	134648071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_134643728_134644190_134644272_134645247_134645325_134645667
transcript_147912.nic	chrX	+	2753	3	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	-26	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	31	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643455	134648071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_134643728_134645247_134645325_134645667
transcript_147913.known	chrX	+	3736	7	FSM	ENSMUSG00000072966.12	ENSMUST00000113136.8	3736	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	54.6669207311169	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGACCCTTCTTCACT	NA	False	NA	NA	False	AATAAA	-20	NA	134739804	134745475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134739998_134740531_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
transcript_147914.known	chrX	+	1532	1	FSM	ENSMUSG00000048040.9	ENSMUST00000058119.9	1532	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTAGGTCCATTATTT	NA	False	NA	20	True	AATAAA	-17	NA	134894572	134896104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134894600_134896100
transcript_147915.known	chrX	+	1580	1	FSM	ENSMUSG00000048355.3	ENSMUST00000057625.3	1580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTTGCTTCCTTTAT	NA	False	NA	22	True	AATAGA	-16	NA	134934115	134935695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_134934100_134935700
transcript_147916.known	chrX	-	903	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_2	34	409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGTAGTTCTTTAAAGG	4156	False	NA	0	True	AATAAA	-18	NA	134968985	134967312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_134967957_134968348_134968422_134968799
transcript_147918.nnic	chrX	-	3090	21	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_19	15.6232999075099	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGTTTATATGTATG	NA	False	NA	NA	False	AATAAA	-25	NA	134986004	134972847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982182_134985845
transcript_147925.known	chrX	-	2978	19	FSM	ENSMUSG00000057000.13	ENSMUST00000080929.13	2978	19	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_14	17.7173452014588	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGTTTATATGTATG	NA	False	NA	NA	False	AATAAA	-25	NA	134986004	134972847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979846_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134985845
transcript_147932.known	chrX	+	837	3	FSM	ENSMUSG00000047844.4	ENSMUST00000116527.2	837	3	0	0	0	0	multi-exon	FALSE	canonical	3	2369	junction_2	964	1841	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGCTCAGTCATCTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	135039744	135041192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135039916_135040271_135040349_135040603
transcript_147933.known	chrX	-	422	4	FSM	ENSMUSG00000051579.11	ENSMUST00000146583.2	422	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	323.806869737022	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGGAGCCATAGAGGAGA	NA	False	NA	NA	False	NA	NA	NA	135072965	135071633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135071799_135072168_135072271_135072384_135072455_135072880
transcript_147934.known	chrX	-	1250	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_2	29	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGGTTAAGACTTGGTC	NA	False	NA	NA	False	NA	NA	NA	135073091	135070829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135071799_135072384_135072455_135072880
transcript_147938.known	chrX	-	1044	3	FSM	ENSMUSG00000054034.11	ENSMUST00000066819.11	1044	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCAGTATCAGTCCATTT	NA	False	NA	NA	False	NA	NA	NA	135104625	135101696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135102563_135103133_135103202_135104515
transcript_147940.known	chrX	-	866	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	0	0	0	0	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	1841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	-2	True	AATAAA	-17	NA	135116262	135114720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135115333_135115652_135115730_135116085
transcript_147942.known	chrX	-	754	3	FSM	ENSMUSG00000050071.9	ENSMUST00000113118.2	754	3	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	2702.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACCTATTGTGAACCTA	NA	False	NA	-43	True	NA	NA	NA	135116233	135114761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135115333_135115694_135115730_135116085
transcript_147943.known	chrX	-	718	2	FSM	ENSMUSG00000050071.9	ENSMUST00000113120.2	718	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCTGTACTCATCTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	135116192	135114721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135115333_135116085
transcript_147945.known	chrX	+	1019	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	0	0	0	0	multi-exon	FALSE	canonical	3	2732	junction_2	36	1287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGCCCATCAATTTA	NA	False	NA	8	True	AATAAA	-24	NA	135145827	135147888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135145977_135146449_135146516_135147084
transcript_147947.known	chrX	+	930	3	FSM	ENSMUSG00000046432.13	ENSMUST00000053540.11	930	3	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_2	392	1279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	135171009	135172727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135171151_135171558_135171632_135172011
transcript_147948.known	chrX	+	826	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	2270	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCCACAAGAACTCTGA	NA	False	NA	NA	False	AATAAA	-18	NA	135171053	135172713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135171151_135171558_135171632_135172057
transcript_147949.known	chrX	+	766	2	FSM	ENSMUSG00000046432.13	ENSMUST00000113113.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTGTCCTTAAAGCAT	NA	False	NA	NA	False	AATAAA	-16	NA	135171523	135172669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135171632_135172011
transcript_147950.known	chrX	+	1116	3	FSM	ENSMUSG00000044550.12	ENSMUST00000060904.11	1116	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTATGGTATTGGCCTGTT	NA	False	NA	5	True	AATAAA	-19	NA	135567123	135569127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135567305_135567872_135567940_135568259
transcript_147951.known	chrX	+	2803	2	FSM	ENSMUSG00000049536.6	ENSMUST00000055104.6	2803	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTACTATAACAAGTATGC	NA	False	NA	NA	False	AATAAA	-21	NA	135608730	135612227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135608838_135609531
transcript_147966.known	chrX	-	1926	4	FSM	ENSMUSG00000031422.17	ENSMUST00000166930.8	1926	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	1454.90228766975	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135641904	135633701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641694
transcript_147967.known	chrX	-	1859	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	1270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135642101	135633701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
transcript_147968.known	chrX	-	1996	4	FSM	ENSMUSG00000031422.17	ENSMUST00000033797.13	1996	4	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	1439.93989072075	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135642410	135633690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135642141
transcript_147969.known	chrX	-	462	4	FSM	ENSMUSG00000031422.17	ENSMUST00000152150.8	462	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	1452.09664508485	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGTCGCTCTGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	135643667	135635050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135643572
transcript_14797.known	chr10	-	1360	4	FSM	ENSMUSG00000025383.3	ENSMUST00000026449.3	1360	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	5.73488351136175	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGGTCTAAATTTCTAA	NA	False	NA	NA	False	NA	NA	NA	128133953	128132007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128132845_128132946_128133094_128133358_128133461_128133679
transcript_147970.known	chrX	-	1825	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	1449.75867723639	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135644439	135633690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
transcript_147974.known	chrX	-	897	3	FSM	ENSMUSG00000031422.17	ENSMUST00000155207.8	897	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	1462	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGCGCCGATGTCGCAG	NA	False	NA	NA	False	NA	NA	NA	135642098	135634583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135635251_135640553_135640644_135641958
transcript_147976.known	chrX	-	1720	3	FSM	ENSMUSG00000031422.17	ENSMUST00000166478.8	1720	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1436	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135644435	135633701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135635251_135636294_135636372_135644341
transcript_147977.known	chrX	+	1052	1	FSM	ENSMUSG00000048155.5	ENSMUST00000059808.5	1052	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTTTCTGCTAGTTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	135828073	135829125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135828100_135829100
transcript_147978.known	chrX	-	816	4	FSM	ENSMUSG00000072955.15	ENSMUST00000127404.8	816	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	61.5918465022405	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTGAGCAGATTGCACA	NA	False	NA	NA	False	AATAAA	-17	NA	135877618	135855736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135856232_135857483_135857589_135876146_135876252_135877507
transcript_147979.known	chrX	-	450	3	FSM	ENSMUSG00000089996.7	ENSMUST00000069803.5	450	3	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	19	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135858774	135856013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135856232_135857483_135857589_135858647
transcript_147981.known	chrX	-	439	3	FSM	ENSMUSG00000089768.3	ENSMUST00000113071.2	439	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	50	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135877623	135874770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135874989_135876146_135876252_135877507
transcript_147982.known	chrX	-	1740	7	FSM	ENSMUSG00000044348.15	ENSMUST00000123516.8	1740	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	9.36304793679209	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAGAGATTATCCCTAGT	NA	False	NA	NA	False	NA	NA	NA	135939021	135903531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938914
transcript_147984.known	chrX	-	1737	7	FSM	ENSMUSG00000044348.15	ENSMUST00000125747.8	1737	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	13.5359603361646	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGATTATCCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	135938781	135903530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938678
transcript_147991.known	chrX	+	2045	4	FSM	ENSMUSG00000031428.12	ENSMUST00000101227.3	2045	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGTGTGCATTACCTGA	7905	False	NA	NA	False	ATTAAA	-11	NA	135893907	135896865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135894154_135894455_135894511_135894679_135894820_135895261
transcript_147993.known	chrX	+	2259	4	FSM	ENSMUSG00000031428.12	ENSMUST00000113067.8	2259	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGCAGGGGTGTTCTATT	7901	False	NA	7	True	AATAAA	-23	NA	135893903	135897127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135894102_135894455_135894511_135894679_135894820_135895261
transcript_147994.known	chrX	+	8299	6	FSM	ENSMUSG00000042595.8	ENSMUST00000047852.8	8299	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	9.32523458149981	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCATGTGTGTGTTTCTT	NA	False	NA	NA	False	AATAAA	-24	NA	135950342	135983252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_135950819_135963406_135963627_135972247_135972398_135972762_135972925_135974637_135974905_135976228
transcript_147996.known	chrX	-	1692	4	FSM	ENSMUSG00000023443.14	ENSMUST00000113066.9	1692	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	6.23609564462324	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCTTTGAGAGTTATA	NA	False	NA	-1	True	AATAAA	-18	NA	136020920	136016145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_136016755_136018006_136018053_136019115_136019552_136020319
transcript_147997.known	chrX	+	1049	5	FSM	ENSMUSG00000042515.14	ENSMUST00000170671.8	1049	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.76662979332984	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAACAACCTACAGCTAC	NA	False	NA	NA	False	NA	NA	NA	138117914	138135790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_138117964_138118896_138119058_138132034_138132164_138134427_138134595_138135247
transcript_147999.known	chrX	+	649	4	FSM	ENSMUSG00000042515.14	ENSMUST00000166444.8	649	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGAAAAATACATCGTCC	NA	False	NA	NA	False	NA	NA	NA	138117914	138135551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_138117964_138132034_138132164_138134427_138134595_138135247
transcript_148000.known	chrX	-	712	4	FSM	ENSMUSG00000086807.9	ENSMUST00000126591.2	712	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	6.59966329107444	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCCAGTTTGAGCTG	NA	False	NA	NA	False	AATAAA	-12	NA	138258487	138248239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_138248639_138255751_138255851_138257038_138257123_138258357
transcript_148001.known	chrX	+	1178	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	0	0	0	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	1453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234431	138238918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
transcript_148003.nic	chrX	+	770	2	ISM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	63	1240	63	-1240	5prime_fragment	FALSE	canonical	3	2989	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAGGTGTGAAAAT	NA	False	NA	-10	True	NA	NA	NA	138234494	138237678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_138235157_138237570
transcript_148005.known	chrX	+	2750	7	FSM	ENSMUSG00000031438.12	ENSMUST00000113026.2	2750	7	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	9.49853789918334	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTGTTCGATTTAGCTC	NA	False	NA	NA	False	AATAAA	-22	NA	138511368	138573894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_138512039_138543034_138543283_138559564_138559637_138564334_138564418_138565236_138565334_138566120_138566290_138572483
transcript_148007.known	chrX	+	5094	21	FSM	ENSMUSG00000042473.9	ENSMUST00000096313.4	5094	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.5644487847162	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTTGGGATAGCATTGT	NA	False	NA	NA	False	NA	NA	NA	138585744	138654154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_138586060_138601747_138601859_138605350_138605470_138606704_138606931_138607865_138608107_138613002_138613211_138614003_138614169_138624651_138624802_138625826_138625978_138626412_138626628_138633006_138633125_138634703_138634990_138637037_138637168_138637702_138637802_138642675_138642745_138642900_138643142_138644104_138644171_138645956_138646041_138647099_138647157_138650696_138650795_138652209
transcript_148009.known	chrX	-	3862	17	FSM	ENSMUSG00000031434.16	ENSMUST00000087401.12	3862	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	16.8851821133205	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTAGGCTTGAATTTGGG	NA	False	NA	-12	True	AATAAA	-17	NA	138772426	138722652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_138723578_138723878_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
transcript_14801.known	chr10	+	4445	26	FSM	ENSMUSG00000005682.10	ENSMUST00000005825.8	4445	26	0	0	0	0	multi-exon	FALSE	canonical	2	78	junction_17	49.8603810655314	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTAGTGTGGGATTCTTT	NA	False	NA	15	True	AATAAA	-24	NA	128139203	128157222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
transcript_148013.known	chrX	-	4412	16	FSM	ENSMUSG00000031434.16	ENSMUST00000033811.14	4412	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	16.9972546802908	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGGTAGCAGGGGAAAT	NA	False	NA	72	True	AATAAA	-24	NA	138772403	138722380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
transcript_14802.known	chr10	+	4379	26	FSM	ENSMUSG00000005682.10	ENSMUST00000218315.2	4379	26	0	0	0	0	multi-exon	FALSE	canonical	2	164	junction_12	40.3480061465248	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTAGTGTGGGATTCTTT	NA	False	NA	15	True	AATAAA	-24	NA	128139242	128157222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
transcript_148020.known	chrX	-	600	4	FSM	ENSMUSG00000031434.16	ENSMUST00000146914.3	600	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	2.86744175568088	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGACGACTTTGGC	NA	False	NA	NA	False	AAAACA	-38	NA	138772159	138759510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_138759766_138765243_138765377_138771818_138771892_138772020
transcript_148023.known	chrX	-	1996	9	FSM	ENSMUSG00000072944.12	ENSMUST00000101212.9	1996	9	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_8	135.330151850946	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963317	138907553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963161
transcript_148024.nic	chrX	-	1898	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	238	junction_8	106.849119673491	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963365	138907553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
transcript_148026.known	chrX	+	1965	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	0	0	0	0	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	1125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	27	True	AATAAA	-19	NA	139357361	139376889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
transcript_14803.known	chr10	+	4316	26	FSM	ENSMUSG00000005682.10	ENSMUST00000219721.2	4316	26	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_2	56.9842083388021	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	9	True	AATAAA	-18	NA	128139245	128157216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128139341_128139963_128140363_128143987_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
transcript_148034.nnic	chrX	-	2360	4	NNC	ENSMUSG00000031431.14	novel	1552	4	NA	NA	1446	0	at_least_one_novel_splicesite	TRUE	canonical	2	6	junction_3	116.499880782009	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139499962	139440276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_139441857_139442853_139442906_139498876_139499308_139499665
transcript_148035.nnic	chrX	-	2232	4	NNC	ENSMUSG00000031431.14	novel	1552	4	NA	NA	1178	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	116.190456674471	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139500230	139440276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_139441857_139442853_139442906_139498876_139499308_139500061
transcript_148036.nnic	chrX	-	2208	4	NNC	ENSMUSG00000031431.14	novel	1552	4	NA	NA	1115	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	110.816164083685	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139500293	139440276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_139441857_139442853_139442906_139498876_139499308_139500148
transcript_148038.known	chrX	-	1552	4	FSM	ENSMUSG00000031431.14	ENSMUST00000112996.9	1552	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	117.12196871448	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGCATCGTTTTTCTATA	NA	False	NA	NA	False	TATAAA	-17	NA	139501408	139441010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_139441857_139442853_139442906_139498876_139499308_139501185
transcript_148039.known	chrX	-	1790	3	FSM	ENSMUSG00000031431.14	ENSMUST00000112995.3	1790	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	112.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443417	139440276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_139441857_139442853_139442906_139443259
transcript_148040.known	chrX	-	1974	3	FSM	ENSMUSG00000031431.14	ENSMUST00000055738.12	1974	3	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_2	61	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443936	139440276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_139441857_139442853_139442906_139443594
transcript_148041.known	chrX	-	2116	4	FSM	ENSMUSG00000042386.8	ENSMUST00000044179.8	2116	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.69967317119759	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAAAAGGCTAGTTCTT	323	False	NA	NA	False	NA	NA	NA	139714182	139709055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_139710457_139710749_139710918_139713386_139713872_139714120
transcript_148044.known	chrX	-	1430	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857438	139849177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
transcript_148045.known	chrX	-	1390	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857477	139849177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
transcript_148048.known	chrX	+	2202	13	FSM	ENSMUSG00000079418.6	ENSMUST00000112971.2	2202	13	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	12.4707992259251	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACGTTTCAGGACTAAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	139857655	139947266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_139857721_139887027_139887139_139888914_139888987_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
transcript_148053.known	chrX	+	2091	12	FSM	ENSMUSG00000079418.6	ENSMUST00000239541.1	2091	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	18.0797133013179	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACGTTTCAGGACTAAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	139857694	139947266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_139857721_139887027_139887139_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
transcript_148055.known	chrX	+	2532	5	FSM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	39.4865483424419	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141009765	141022688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_141009928_141011286_141011378_141012519_141012607_141019779_141019925_141020641
transcript_148057.known	chrX	+	2447	5	FSM	ENSMUSG00000042271.14	ENSMUST00000042329.12	2447	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	115.070358911407	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141010932	141022688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_141011010_141011286_141011378_141012519_141012607_141019779_141019925_141020641
transcript_148058.nnic	chrX	+	2479	4	NIC	ENSMUSG00000042271.14	novel	2532	5	NA	NA	-34	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	108.812785196512	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141009731	141022688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_141009928_141011286_141011378_141019779_141019925_141020641
transcript_148059.known	chrX	+	2484	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112914.8	2484	4	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_3	9.93310961716756	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011172	141022688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_141011378_141012519_141012607_141019779_141019925_141020641
transcript_148061.known	chrX	+	2538	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112913.2	2538	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	129.476724635056	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011698	141022688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_141011958_141012519_141012607_141019779_141019925_141020641
transcript_148062.known	chrX	-	4956	16	FSM	ENSMUSG00000031278.13	ENSMUST00000112903.8	4956	16	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_14	45.3617557959223	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTTGTTTTTTCTTAT	NA	False	NA	-3	True	AATAAA	-18	NA	141173500	141100988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134612_141143382_141143433_141173300
transcript_148063.known	chrX	-	4959	16	FSM	ENSMUSG00000031278.13	ENSMUST00000112904.8	4959	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_14	37.5140862432589	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTTGTTTTTTCTTAT	NA	False	NA	-3	True	AATAAA	-18	NA	141173500	141100988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134615_141143382_141143433_141173300
transcript_148064.known	chrX	-	5280	16	FSM	ENSMUSG00000031278.13	ENSMUST00000033634.5	5280	16	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_14	18.9168942717585	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTTGTTTTTTCTTAT	NA	False	NA	-3	True	AATAAA	-18	NA	141173531	141100988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134905_141143382_141143433_141173300
transcript_148071.known	chrX	+	5149	7	FSM	ENSMUSG00000047045.18	ENSMUST00000087333.9	5149	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	37.6592913133296	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTTAGCATTTTGAATC	NA	False	NA	8	True	AATAAA	-15	NA	141464413	141621234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_141464553_141465286_141465946_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
transcript_148075.nic	chrX	+	4560	6	ISM	ENSMUSG00000047045.18	ENSMUST00000112889.8	1742	7	-58	5256	-58	0	5prime_fragment	FALSE	canonical	3	60	junction_1	22.0599184042009	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTTAGCATTTTGAATC	NA	False	NA	8	True	AATAAA	-15	NA	141464343	141621234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_141464553_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
transcript_148076.nic	chrX	+	4693	6	ISM	ENSMUSG00000047045.18	ENSMUST00000112889.8	1742	7	-58	5123	-58	133	5prime_fragment	FALSE	canonical	3	60	junction_1	22.0599184042009	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGAGTCCTGGCCTTGC	NA	False	NA	5	True	ATTAAA	-14	NA	141464343	141621367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_141464553_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
transcript_148078.known	chrX	+	4443	5	FSM	ENSMUSG00000047045.18	ENSMUST00000101198.9	4443	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	49.9218138692896	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTTAGCATTTTGAATC	NA	False	NA	8	True	AATAAA	-15	NA	141464410	141621234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_141464553_141553962_141554030_141588985_141589065_141615496_141615598_141617180
transcript_148079.nic	chrX	+	2782	2	ISM	ENSMUSG00000047045.18	ENSMUST00000087333.9	5149	7	-53	153358	-41	-86410	5prime_fragment	FALSE	canonical	3	35	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGAAACTGGTCCCCG	NA	False	NA	NA	False	NA	NA	NA	141464360	141467876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_141464553_141465286
transcript_148080.known	chrX	-	5437	6	FSM	ENSMUSG00000042225.4	ENSMUST00000041317.3	5437	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	6.04648658313239	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGTTTTAGATTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	141749724	141634141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_141638644_141640471_141640569_141641876_141641968_141661105_141661221_141695168_141695280_141749203
transcript_148083.known	chrX	-	3561	13	FSM	ENSMUSG00000067276.6	ENSMUST00000087316.6	3561	13	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	5.06348584365444	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTTGACTAGTTAATGG	NA	False	NA	NA	False	AATAAA	-22	NA	142610410	142585226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_142586823_142587352_142587490_142587670_142587793_142588390_142588594_142588758_142588882_142590241_142590429_142590522_142590601_142590836_142591031_142591613_142591807_142592290_142592500_142593840_142593973_142603291_142603473_142610204
transcript_148087.known	chrX	+	4168	27	FSM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	235.310423828037	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143101018	143157446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
transcript_148091.nic	chrX	+	4287	27	NIC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	548	junction_3	189.502244292029	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100795	143157446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
transcript_14810.known	chr10	+	3410	2	FSM	ENSMUSG00000005682.10	ENSMUST00000219801.2	3410	2	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128139244	128143277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128139341_128139963
transcript_148101.nic	chrX	+	4050	26	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_21	266.015115360011	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143100963	143157446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
transcript_148110.nic	chrX	+	3868	25	NIC	ENSMUSG00000041718.17	novel	2996	19	NA	NA	-67	0	combination_of_known_junctions	TRUE	canonical	3	134	junction_1	227.828696459765	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118797	143157446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_143118899_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
transcript_148119.nic	chrX	+	3980	24	ISM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	17876	0	30	0	3prime_fragment	FALSE	canonical	3	957	junction_21	118.352985224418	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118894	143157446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
transcript_14812.known	chr10	+	1383	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	0	0	0	0	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	1179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTATTCAGTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	128158327	128163422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
transcript_148126.nic	chrX	+	3911	23	NIC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	30	0	intron_retention	FALSE	canonical	3	128	junction_18	237.652139178671	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143118894	143157446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
transcript_14814.known	chr10	+	763	6	FSM	ENSMUSG00000025381.4	ENSMUST00000026446.4	763	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	1015.96602305392	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158336	128163056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128158400_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
transcript_148141.known	chrX	+	1802	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	294.754511792818	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	143100799	143108193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
transcript_148145.known	chrX	+	479	4	FSM	ENSMUSG00000041718.17	ENSMUST00000149330.8	479	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	280.483313031077	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATCAAAATAAATTCAT	NA	False	NA	40	True	TTTAAA	-31	NA	143100998	143107173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143107011
transcript_148155.known	chrX	+	2996	19	FSM	ENSMUSG00000041718.17	ENSMUST00000149427.8	2996	19	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_7	269.959970740977	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	15	True	AATAAA	-25	NA	143122000	143157446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
transcript_148156.known	chrX	+	2028	7	FSM	ENSMUSG00000072930.4	ENSMUST00000112796.2	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	7.43303437365925	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTGTTTGTGTGTGTG	1209	False	NA	NA	False	AATAAA	-19	NA	146963719	147007706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_146963812_146980956_146981083_146981801_146981882_146985542_146986502_146999377_146999460_147000265_147000316_147007067
transcript_148161.known	chrX	+	2026	7	FSM	ENSMUSG00000096834.8	ENSMUST00000101186.10	2026	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5.30461015427985	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147446593	147486845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_147446686_147463739_147463866_147464585_147464666_147468313_147469273_147478430_147478513_147479317_147479368_147486208
transcript_148162.known	chrX	+	1972	8	FSM	ENSMUSG00000096834.8	ENSMUST00000101190.11	1972	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	4.38922614163921	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147446599	147486845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_147446686_147463739_147463862_147464581_147464666_147468313_147468993_147469040_147469273_147478430_147478513_147479317_147479368_147486208
transcript_148163.known	chrX	+	2025	7	FSM	ENSMUSG00000079387.11	ENSMUST00000163338.2	2025	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	4.85626742811116	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147665571	147707135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_147665664_147686432_147686559_147687278_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
transcript_148164.known	chrX	+	2023	7	FSM	ENSMUSG00000079387.11	ENSMUST00000101185.10	2023	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.77413381096719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147640635	147707135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_147640726_147686432_147686559_147687278_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
transcript_148166.known	chrX	+	2028	7	FSM	ENSMUSG00000094885.8	ENSMUST00000177554.2	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5.58022301426107	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTGTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	147880947	147921148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_147881040_147898081_147898208_147898926_147899007_147902668_147903628_147912815_147912898_147913703_147913754_147920509
transcript_148167.known	chrX	+	2028	7	FSM	ENSMUSG00000095621.2	ENSMUST00000178169.2	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	6.67707520800338	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTGTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	148230612	148270780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_148230705_148247706_148247833_148248551_148248632_148252302_148253262_148262449_148262532_148263337_148263388_148270141
transcript_148169.known	chrX	+	1977	7	FSM	ENSMUSG00000072923.7	ENSMUST00000101181.5	1977	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.06622805119022	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	148377565	148419760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_148377658_148394767_148394894_148395612_148395693_148399354_148400266_148411437_148411520_148412325_148412376_148419124
transcript_148171.known	chrX	+	2029	7	FSM	ENSMUSG00000094378.8	ENSMUST00000101180.8	2029	7	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_6	4.6785562825394	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	148567468	148609690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_148567561_148582582_148582709_148583428_148583509_148587159_148588119_148601122_148601205_148602010_148602061_148609050
transcript_148172.known	chrX	+	2026	7	FSM	ENSMUSG00000095082.2	ENSMUST00000112740.2	2026	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	4.07226390762354	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	148724650	148767978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_148724743_148744867_148744994_148745713_148745794_148749452_148750412_148759566_148759649_148760454_148760505_148767341
transcript_148174.known	chrX	-	1316	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	83.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242150	149191573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149192597_149203337_149203438_149241957
transcript_148175.known	chrX	-	864	3	FSM	ENSMUSG00000041353.13	ENSMUST00000151067.8	864	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	131	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCTCATTCTGATATG	NA	False	NA	NA	False	NA	NA	NA	149242150	149191915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149192597_149203337_149203438_149242067
transcript_148183.nnic	chrX	+	2070	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-78	0	at_least_one_novel_splicesite	TRUE	canonical	3	18	junction_1	17.7330827049958	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371146	149426874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_149371410_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_148184.nic	chrX	+	2140	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_2	17.6227126175286	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371162	149426874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_149371339_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_148185.nic	chrX	+	1983	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	10.2058806577385	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371162	149426874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_149371339_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_148187.known	chrX	-	795	6	FSM	ENSMUSG00000025269.17	ENSMUST00000140207.8	795	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	34.2963554915096	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCTGGTCAGTGGTCA	NA	False	NA	NA	False	AAAACA	-13	NA	149371067	149355544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370888
transcript_148189.known	chrX	-	1884	6	FSM	ENSMUSG00000025269.17	ENSMUST00000026303.16	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	8.28009661779378	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGTTGAGTGGATAT	NA	False	NA	-4	True	AATAAA	-21	NA	149371145	149354503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
transcript_148190.known	chrX	+	1892	11	FSM	ENSMUSG00000025270.14	ENSMUST00000112715.2	1892	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.3	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCTTTGGTAGACAGAAGA	NA	False	NA	NA	False	NA	NA	NA	149330454	149353618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_149330482_149335144_149335341_149335999_149336078_149336928_149337040_149340181_149340405_149340934_149341120_149343729_149343910_149346756_149346922_149348002_149348272_149349496_149349660_149353323
transcript_148192.known	chrX	-	6610	13	FSM	ENSMUSG00000025272.17	ENSMUST00000112709.8	6610	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_12	3.93964888452427	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTATTCTGTCCTTTAAT	NA	False	NA	-17	True	ATTAAA	-18	NA	149440432	149428299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149428518_149428689_149432652_149433429_149433545_149433972_149434036_149434411_149434455_149434548_149434629_149435279_149435372_149435836_149435917_149436115_149436180_149436287_149436393_149436984_149438611_149438879_149438950_149440340
transcript_148194.known	chrX	-	2644	12	FSM	ENSMUSG00000025272.17	ENSMUST00000163969.8	2644	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.02063454549555	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGCTTATTCTGTCCTT	NA	False	NA	-21	True	ATTAAA	-14	NA	149440432	149428303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149428518_149433429_149433545_149433972_149434036_149434411_149434455_149434548_149434629_149435279_149435372_149435836_149435917_149436115_149436180_149436287_149436393_149436984_149438611_149438879_149438950_149440340
transcript_148201.nnic	chrX	-	2086	14	NNC	ENSMUSG00000025268.16	novel	2107	13	NA	NA	0	0	intron_retention	TRUE	canonical	0	0	junction_2	63.3324094191926	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149595954	149589416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_149589552_149589705_149589837_149589903_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
transcript_148207.nnic	chrX	-	2224	13	NNC	ENSMUSG00000025268.16	novel	2107	13	NA	NA	-45	0	intron_retention	FALSE	canonical	0	0	junction_2	54.1884571554578	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149596009	149589416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_149589552_149589705_149589837_149589903_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
transcript_148209.nic	chrX	-	2210	13	NIC	ENSMUSG00000025268.16	novel	2107	13	NA	NA	-47	0	intron_retention	FALSE	canonical	3	35	junction_12	45.1259810604342	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149596011	149589416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
transcript_14821.known	chr10	+	598	2	FSM	ENSMUSG00000025381.4	ENSMUST00000220391.2	598	2	0	0	0	0	multi-exon	FALSE	canonical	3	1443	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAATCCAGATGGCAGCC	NA	False	NA	NA	False	NA	NA	NA	128158382	128159534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128158645_128159198
transcript_148211.known	chrX	-	2107	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_12	38.0929965858409	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149596703	149589416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
transcript_148212.known	chrX	-	2183	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112699.9	2183	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_12	47.4332864839309	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGTCAAAGTTTCCATCTG	NA	False	NA	51	True	TTTAAA	-5	NA	149597341	149589365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149597224
transcript_148213.nic	chrX	-	2291	12	ISM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	694	0	-45	0	3prime_fragment	FALSE	canonical	3	154	junction_9	18.0545546095372	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149596009	149589416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
transcript_148218.known	chrX	-	2572	11	FSM	ENSMUSG00000025268.16	ENSMUST00000145342.8	2572	11	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_8	16.0735808082704	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149595964	149589416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
transcript_148235.nnic	chrX	-	4717	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	-16	True	NA	NA	NA	149800325	149766136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_149766745_149766903_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
transcript_148239.nnic	chrX	-	4705	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	140.432799209266	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGAGACTGTTTT	NA	False	NA	-18	True	NA	NA	NA	149800325	149766138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_149766745_149766913_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
transcript_148243.known	chrX	-	4869	16	FSM	ENSMUSG00000025266.12	ENSMUST00000112691.9	4869	16	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_8	38.4461528201024	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	-16	True	NA	NA	NA	149800318	149766136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
transcript_148269.known	chrX	+	4001	18	FSM	ENSMUSG00000025265.15	ENSMUST00000026296.8	4001	18	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_3	37.9662935558211	380	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCAGAGCACTGCTATGG	NA	False	NA	20	True	AATACA	-23	NA	149830165	149872517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_149830978_149849176_149849351_149849705_149849884_149850008_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
transcript_1483.known	chr1	+	4241	25	FSM	ENSMUSG00000026104.15	ENSMUST00000186857.7	4241	25	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	8.12649558884736	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATTTTATGTATATGGG	3300	False	NA	NA	False	NA	NA	NA	52158650	52200166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_52158768_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
transcript_148303.known	chrX	-	3804	5	FSM	ENSMUSG00000025264.13	ENSMUST00000026295.10	3804	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	125.415310070182	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCATTTTCCTTGTTTC	NA	False	NA	-2	True	AAAAAG	-17	NA	149879539	149870090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149873411_149873591_149873778_149874671_149874764_149879160_149879252_149879424
transcript_148308.known	chrX	-	1318	4	FSM	ENSMUSG00000025264.13	ENSMUST00000166010.2	1318	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	140.42158745087	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879539	149872476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879424
transcript_148317.known	chrX	-	483	1	FSM	ENSMUSG00000083596.5	ENSMUST00000121545.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	149998645	149998162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_149998200_149998600
transcript_148319.nic	chrX	+	3067	15	ISM	ENSMUSG00000025262.9	ENSMUST00000073364.6	5463	16	17	3998	17	-3998	5prime_fragment	FALSE	canonical	2	7	junction_7	3.90447153391899	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAATAAACAAGTAAGTAT	NA	False	NA	NA	False	NA	NA	NA	150127187	150250840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_150127933_150159743_150159991_150164906_150164990_150182670_150182800_150211912_150212013_150212832_150212910_150213386_150213665_150214465_150214740_150215597_150215770_150219140_150219391_150240717_150240833_150246964_150247175_150248278_150248481_150250295_150250435_150250794
transcript_148321.nnic	chrX	+	1624	5	NNC	ENSMUSG00000025262.9	novel	5823	15	NA	NA	-298	-66103	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	5.22015325445528	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTTTGTCAGGTAT	NA	False	NA	NA	False	NA	NA	NA	150126872	150188735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_150127933_150159743_150159991_150164906_150164990_150182670_150182800_150188630
transcript_148325.known	chrX	+	5728	22	FSM	ENSMUSG00000041229.16	ENSMUST00000046950.13	5728	22	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_12	12.6336842339938	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTGCTTGACATTATT	NA	False	NA	6	True	GATAAA	-19	NA	150304182	150416855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
transcript_148328.known	chrX	+	6359	22	FSM	ENSMUSG00000041229.16	ENSMUST00000168501.8	6359	22	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	20.027645292538	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGTTGCTTGACATTA	NA	False	NA	4	True	GATAAA	-17	NA	150303667	150416853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150304434_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
transcript_14833.known	chr10	+	2926	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	0	0	0	0	multi-exon	TRUE	canonical	3	1246	junction_9	132.722869167299	3482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	NA	False	NA	18	True	AATAAA	-18	NA	128173602	128198348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
transcript_148331.nic	chrX	+	5990	21	NIC	ENSMUSG00000041229.16	novel	5728	22	NA	NA	-50	0	combination_of_known_junctions	TRUE	canonical	3	39	junction_12	14.924727803213	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTGCTTGACATTATT	NA	False	NA	6	True	GATAAA	-19	NA	150303617	150416855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
transcript_148338.nic	chrX	+	2766	19	ISM	ENSMUSG00000041229.16	ENSMUST00000046950.13	5728	22	-41	12935	-23	-4909	5prime_fragment	FALSE	canonical	3	62	junction_12	12.5530971044432	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTCAGATGATGCTC	NA	False	NA	NA	False	AAGAAA	-3	NA	150304141	150403920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859
transcript_148339.known	chrX	+	3105	19	FSM	ENSMUSG00000041229.16	ENSMUST00000046962.11	3105	19	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_12	15.1136640000422	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAATGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150304176	150408829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187
transcript_148340.nnic	chrX	+	3014	19	NNC	ENSMUSG00000041229.16	novel	6359	22	NA	NA	-5	-4909	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	23.2541646343081	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTCAGATGATGCTC	NA	False	NA	NA	False	AAGAAA	-3	NA	150303662	150403920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_150304085_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859
transcript_148342.known	chrX	+	3484	18	FSM	ENSMUSG00000041229.16	ENSMUST00000112670.8	3484	18	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_12	12.7439516829855	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAATAATGCTGATTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	150304164	150383382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269
transcript_148345.nic	chrX	+	2463	18	ISM	ENSMUSG00000041229.16	ENSMUST00000046962.11	3105	19	-35	4909	-23	-4909	5prime_fragment	FALSE	canonical	3	39	junction_12	15.2242749158311	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTCAGATGATGCTC	NA	False	NA	NA	False	AAGAAA	-3	NA	150304141	150403920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859
transcript_148360.known	chrX	+	5010	25	FSM	ENSMUSG00000025261.19	ENSMUST00000130243.8	5010	25	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	19.9095175453573	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAAAGATTGGGGG	NA	False	NA	NA	False	AATGAA	-34	NA	150586342	150656544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150586566_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150642450_150642685_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475
transcript_148364.known	chrX	+	4473	25	FSM	ENSMUSG00000025261.19	ENSMUST00000153687.8	4473	25	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_3	37.1289045832968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCCATTTTGTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	150586238	150656029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150586566_150589715_150589857_150618219_150618289_150619217_150619326_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475
transcript_148366.known	chrX	+	992	6	FSM	ENSMUSG00000025260.11	ENSMUST00000112617.4	992	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	696.467486678309	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150784840	150787438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786618_150786778_150786857_150786967_150787134
transcript_148367.known	chrX	+	962	6	FSM	ENSMUSG00000025260.11	ENSMUST00000026289.10	962	6	0	0	0	0	multi-exon	FALSE	canonical	3	1359	junction_1	187.651165730459	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150784840	150787438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
transcript_148370.nnic	chrX	-	1547	8	NIC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_7	33.0126753640761	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	-2	True	AATAAA	-17	NA	150799291	150787577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799119
transcript_148371.known	chrX	-	1508	8	FSM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	14.6816559150582	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	-2	True	AATAAA	-17	NA	150799291	150787577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
transcript_148373.nnic	chrX	-	1544	8	NNC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	-593	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_7	35.5969501101268	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	-2	True	AATAAA	-17	NA	150799884	150787577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799715
transcript_148375.nic	chrX	-	1105	7	ISM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	6	505	6	-505	5prime_fragment	FALSE	canonical	3	80	junction_6	15.8534959341255	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAACAGCGCCAAGCCGAAA	NA	False	NA	NA	False	AAGAAA	-20	NA	150799285	150788082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
transcript_148378.known	chrX	+	4691	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	0	0	0	0	multi-exon	TRUE	canonical	3	535	junction_3	101.202320735358	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTAGCTTCAATTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	150799423	150845690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
transcript_148379.nic	chrX	+	3670	23	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	-5	-724	combination_of_known_junctions	FALSE	canonical	3	167	junction_1	147.492463737996	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	17	True	AATAAA	-21	NA	150799418	150844966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
transcript_148385.known	chrX	+	1824	10	FSM	ENSMUSG00000041133.12	ENSMUST00000145518.8	1824	10	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	207.77290546872	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAAGAACGTTT	NA	False	NA	NA	False	NA	NA	NA	150799423	150819208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097
transcript_148406.nic	chrX	+	5540	27	NIC	ENSMUSG00000025332.15	novel	6449	26	NA	NA	-18	-11	combination_of_known_junctions	FALSE	canonical	3	33	junction_26	107.655900439355	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATTTGTTCAAAAGGAGA	NA	False	NA	10	True	AATAAA	-20	NA	151016206	151056753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054926_151055070_151055271_151055704_151055898_151056046
transcript_148411.known	chrX	+	6449	26	FSM	ENSMUSG00000025332.15	ENSMUST00000112588.9	6449	26	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_24	43.2417205948144	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTTGTGTCTGCCTTC	NA	False	NA	20	True	NA	NA	NA	151016224	151057531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054926_151055070_151055271_151055704
transcript_148423.known	chrX	+	5520	25	FSM	ENSMUSG00000025332.15	ENSMUST00000082177.13	5520	25	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	115.294181396499	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAGAAAAAAAAAAGCAAAA	NA	False	NA	-20	True	AATAAA	-35	NA	151016267	151056768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_151016707_151020628_151020707_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054926_151055070_151055271_151055704
transcript_148432.known	chrX	+	5900	26	FSM	ENSMUSG00000025332.15	ENSMUST00000112584.8	5900	26	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_24	80.1180528969595	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGAGAAAAAAAAAAGC	NA	False	NA	21	True	AATAAA	-31	NA	151016015	151056764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054935_151055070_151055271_151055704
transcript_148438.known	chrX	-	367	4	FSM	ENSMUSG00000087403.10	ENSMUST00000141922.8	367	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	33.5360502544153	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATAGAGCACCTGCCGG	NA	False	NA	NA	False	NA	NA	NA	151110466	151098307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151098416_151103205_151103281_151110156_151110236_151110361
transcript_148440.known	chrX	-	445	3	FSM	ENSMUSG00000087403.10	ENSMUST00000149098.8	445	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	40.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGACTGCTCTCCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	151110491	151081647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151081884_151110156_151110236_151110361
transcript_148441.known	chrX	-	4212	3	FSM	ENSMUSG00000087403.10	ENSMUST00000195280.3	4212	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	19	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGACTGTGTGACTTCC	NA	False	NA	NA	False	NA	NA	NA	151110491	151077823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151081871_151110156_151110236_151110405
transcript_148446.nnic	chrX	-	458	3	NIC	ENSMUSG00000087403.10	novel	367	4	NA	NA	-15	30	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	40	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAACAACAAAAGCGGCC	NA	False	NA	NA	False	NA	NA	NA	151110506	151098181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_151098416_151110156_151110236_151110361
transcript_148448.known	chrX	-	2696	7	FSM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_2	16.4189930669738	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCTTGGAGTCTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	151125421	151119850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
transcript_148452.known	chrX	-	2804	6	FSM	ENSMUSG00000041096.14	ENSMUST00000149685.8	2804	6	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_2	17.9844377170931	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTGGAGTCTTTTGTCC	NA	False	NA	-1	True	AATAAA	-20	NA	151125421	151119847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123377_151124535
transcript_148453.known	chrX	-	841	6	FSM	ENSMUSG00000041096.14	ENSMUST00000178165.2	841	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	74.8561286736096	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCACTGACAATGAGACC	NA	False	NA	NA	False	NA	NA	NA	151124840	151122296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123390_151124535
transcript_148458.known	chrX	-	998	3	FSM	ENSMUSG00000056679.14	ENSMUST00000137840.2	998	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTGTGTTTATAGGATG	NA	False	NA	NA	False	NA	NA	NA	151151700	151150011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151150266_151150416_151150507_151151046
transcript_148459.known	chrX	-	6997	10	FSM	ENSMUSG00000045180.14	ENSMUST00000062317.5	6997	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	17.4384278371675	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGAATGTCTTTATTTCCT	NA	False	NA	-2	True	AATAAA	-21	NA	151552461	151392987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121_151406314_151440419_151440521_151442259_151444715_151456527_151456660_151478635_151478788_151552281
transcript_148460.known	chrX	-	7494	10	FSM	ENSMUSG00000045180.14	ENSMUST00000101141.9	7494	10	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_9	12.3987255418341	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAACATACCTACTACAAT	NA	False	NA	NA	False	ATTAAA	-12	NA	151552457	151392504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151395791_151396390_151396664_151400188_151400352_151401896_151402443_151406121_151406332_151440419_151440521_151442259_151444715_151456527_151456660_151478635_151478788_151552281
transcript_148463.known	chrX	+	1586	9	FSM	ENSMUSG00000025333.11	ENSMUST00000026383.4	1586	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	3.91910385164772	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACTCCATTTTGACATG	NA	False	NA	NA	False	AATAAA	-10	NA	151564981	151591642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_151565289_151568038_151568149_151569121_151569217_151573479_151573573_151576324_151576435_151578551_151578661_151580695_151580814_151581373_151581612_151591236
transcript_148465.known	chrX	-	651	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7975	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	151693151	151692500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151692500_151693200
transcript_148466.known	chrX	+	2204	2	FSM	ENSMUSG00000067215.6	ENSMUST00000095755.4	2204	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGACCAAAAAAAATTTAAA	8832	False	NA	NA	False	NA	NA	NA	151789464	151792412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_151789541_151790284
transcript_148468.known	chrX	-	1410	1	FSM	ENSMUSG00000047238.5	ENSMUST00000051484.5	1410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTCATTTATTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	151820571	151819161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_151819200_151820600
transcript_148469.known	chrX	+	3210	4	FSM	ENSMUSG00000071665.11	ENSMUST00000096265.10	3210	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGAGTTGATGTTTCTT	NA	False	NA	NA	False	AATAAA	-11	NA	151901781	151915857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_151901847_151902010_151902087_151909895_151909940_151912832
transcript_148470.known	chrX	+	2258	11	FSM	ENSMUSG00000041658.13	ENSMUST00000039720.11	2258	11	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_4	30.0765689532566	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTGTCTGTGTTTCTT	3176	False	NA	NA	False	AATAAA	-17	NA	151922976	151954939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_151923572_151924359_151924394_151926971_151927072_151931447_151931532_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151954211
transcript_148476.known	chrX	+	3344	1	FSM	ENSMUSG00000050148.10	ENSMUST00000060714.10	3344	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTTATTTTGCCTTTT	7332	False	NA	13	True	ATTAAA	-40	NA	152281222	152284566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_152281200_152284600
transcript_148477.known	chrX	+	788	4	FSM	ENSMUSG00000086316.9	ENSMUST00000140575.8	788	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	8.37987005998436	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGTCCAAATAAATTT	NA	False	NA	9	True	ATTAAA	-14	NA	152506585	152524260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_152506934_152508700_152508838_152511857_152511936_152524035
transcript_148478.known	chrX	+	775	3	FSM	ENSMUSG00000086316.9	ENSMUST00000149514.8	775	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGACCCCTTTCTT	NA	False	NA	NA	False	AGTAAA	-20	NA	152506622	152512184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_152506934_152508700_152508838_152511857
transcript_148479.known	chrX	+	1346	3	FSM	ENSMUSG00000086316.9	ENSMUST00000185492.7	1346	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	49	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCATTCCAGAGTTATAC	NA	False	NA	NA	False	AATATA	-13	NA	152506605	152524916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_152506934_152508700_152508838_152524035
transcript_148480.known	chrX	+	536	3	FSM	ENSMUSG00000046550.9	ENSMUST00000123264.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTCGTTCTCTGGAGTC	NA	False	NA	NA	False	TTTAAA	-21	NA	152615236	152616519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_152615326_152615430_152615545_152616186
transcript_148481.known	chrX	+	1309	2	FSM	ENSMUSG00000046550.9	ENSMUST00000049999.9	1309	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGTCATCTAAAAAATTGA	NA	False	NA	NA	False	AATAAA	-19	NA	152615288	152617239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_152615545_152616186
transcript_148485.nnic	chrX	-	1764	5	Genic_Genomic	ENSMUSG00000094196.3	novel	963	1	NA	NA	-9516	377	multi-exon	FALSE	canonical	3	11	junction_3	4.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTAATCTCTTGTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	153742017	153731161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chrX_-_153732567_153733511_153733601_153740339_153740441_153741158_153741264_153741953
transcript_148487.nnic	chrX	-	1779	5	NNC	ENSMUSG00000079350.3	novel	1646	4	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	13.4233937586588	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCTTTAGTTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	153778875	153768770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_153770173_153771107_153771197_153777179_153777280_153777995_153778100_153778791
transcript_148488.known	chrX	-	1646	4	FSM	ENSMUSG00000079350.3	ENSMUST00000070141.7	1646	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	17.6823829464998	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCTTTAGTTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	153778846	153768770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_153770173_153771107_153771197_153777179_153777280_153778791
transcript_148491.nnic	chrX	-	1762	5	NNC	ENSMUSG00000079349.10	novel	1360	4	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	19.2272592950738	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153846155	153836056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_-_153837456_153838390_153838480_153844474_153844576_153845292_153845397_153846086
transcript_148493.known	chrX	-	1685	4	FSM	ENSMUSG00000055746.10	ENSMUST00000069477.8	1685	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	9.56846672960488	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCATTTGTAACACTA	NA	False	NA	NA	False	ATTAAA	-19	NA	153816288	153810196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_153811648_153812583_153812673_153815451_153815557_153816248
transcript_148498.known	chrX	-	1360	4	FSM	ENSMUSG00000079349.10	ENSMUST00000069556.4	1360	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	7.03957069398096	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACATTCAATTTTCGCTT	NA	False	NA	NA	False	NA	NA	NA	153846141	153836340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_153837456_153838390_153838480_153844474_153844576_153846086
transcript_148501.nnic	chrX	-	1587	3	NIC	ENSMUSG00000079349.10	novel	1360	4	NA	NA	-29	3	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	18.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTAGTTTCTTTTTGTG	NA	False	NA	3	True	AATAAA	-21	NA	153846170	153836053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_153837456_153844474_153844576_153846086
transcript_148502.known	chrX	-	1563	3	FSM	ENSMUSG00000079349.10	ENSMUST00000169540.8	1563	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	8.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153844549	153836056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_153837456_153838390_153838480_153844474
transcript_148503.known	chrX	-	1272	7	FSM	ENSMUSG00000025283.16	ENSMUST00000152463.8	1272	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	540.496993516153	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999445	153996127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998116_153998227_153998596_153998681_153998780_153998833_153999098
transcript_148505.known	chrX	-	1162	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	0	0	0	0	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999445	153996127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
transcript_148506.known	chrX	-	896	6	FSM	ENSMUSG00000025283.16	ENSMUST00000112551.4	896	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	481.393144944961	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGGCAGAATTCTTGAA	NA	False	NA	NA	False	TTTAAA	-21	NA	153999341	153996310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_153996664_153996892_153996955_153997028_153997131_153998596_153998681_153998780_153998833_153999098
transcript_148513.known	chrX	+	1740	16	FSM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_1	338.793873747577	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACGATTGTGAGTCTCC	NA	False	NA	18	True	AATAAA	-12	NA	154045500	154080642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
transcript_148516.known	chrX	+	1752	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	0	0	0	0	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTCTCCCATGTTGT	NA	False	NA	26	True	AATAAA	-20	NA	154045438	154080650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
transcript_148527.nic	chrX	+	832	9	ISM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	52	3709	-10	-2968	5prime_fragment	FALSE	canonical	2	666	junction_2	112.27303494161	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGAAGAGCTCTTTAA	NA	False	NA	NA	False	AATAAA	-1	NA	154045490	154076941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904
transcript_148531.known	chrX	-	990	7	FSM	ENSMUSG00000025289.16	ENSMUST00000026328.11	990	7	0	0	0	0	multi-exon	FALSE	canonical	3	951	junction_2	71.6488349909163	1387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTTTGCCATTGTAATTT	NA	False	NA	-1	True	AATAAA	-22	NA	154121463	154106913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108
transcript_148535.known	chrX	-	3717	11	FSM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	141.867156170835	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCCGTCTCCATTATGC	NA	False	NA	-4	True	AATAAA	-11	NA	156275283	156226850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
transcript_148543.known	chrX	-	3053	6	FSM	ENSMUSG00000071708.12	ENSMUST00000127089.2	3053	6	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	22.6680391741324	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGATGGCACTGTTGA	NA	False	NA	NA	False	AATAAA	-18	NA	156275040	156241869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
transcript_148544.nic	chrX	-	649	3	ISM	ENSMUSG00000071708.12	ENSMUST00000127089.2	3053	6	-294	7524	-51	-534	5prime_fragment	FALSE	canonical	3	430	junction_1	30.5	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTTTTTTTTTTTTTA	NA	False	NA	NA	False	AAGAAA	-9	NA	156275334	156249393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_156249488_156252983_156253105_156274900
transcript_148545.known	chrX	-	1540	10	FSM	ENSMUSG00000071708.12	ENSMUST00000145477.8	1540	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	195.70127146833	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGATTAGCAGTGCTTCA	NA	False	NA	-46	True	ATTAAA	-27	NA	156275062	156228691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
transcript_148549.known	chrX	-	4797	11	FSM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_9	30.3809150619266	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTTCTGTATCATATTT	NA	False	NA	-5	True	AATAAA	-35	NA	156381711	156330819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_148551.nic	chrX	-	4641	10	NIC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	97	junction_9	42.882267767562	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTTCTGTATCATATTT	NA	False	NA	-5	True	AATAAA	-35	NA	156381704	156330819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156381491
transcript_148555.nic	chrX	-	3515	6	NIC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	7	-167	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	99.5630453531831	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTGCTTGTGTGAATAT	NA	False	NA	NA	False	AATAAA	-21	NA	156381704	156349109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_156351813_156351929_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156381491
transcript_148557.known	chrX	-	3890	6	FSM	ENSMUSG00000046873.19	ENSMUST00000179062.8	3890	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	80.1164152967418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTGTTTAGATGAATGAA	NA	False	NA	NA	False	AATAAA	-14	NA	156381646	156348942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_148560.known	chrX	-	2379	5	FSM	ENSMUSG00000046873.19	ENSMUST00000139786.8	2379	5	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	45.1386752131695	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	156381647	156354214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_148562.known	chrX	-	529	4	FSM	ENSMUSG00000046873.19	ENSMUST00000149249.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_3	71.2242156073964	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTATTTATCCTGGGGCAT	NA	False	NA	NA	False	NA	NA	NA	156381675	156355943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_156355983_156359079_156359184_156374349_156374552_156381491
transcript_148563.known	chrX	-	2867	1	FSM	ENSMUSG00000091736.4	ENSMUST00000065806.5	2867	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATAGCTTGCTTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	156351981	156349114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_156349100_156352000
transcript_148564.known	chrX	-	796	3	FSM	ENSMUSG00000046873.19	ENSMUST00000152826.3	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAGCAGAAATTGTCACA	NA	False	NA	NA	False	NA	NA	NA	156381639	156374052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_156374552_156376720_156376870_156381491
transcript_148569.nnic	chrX	+	2488	22	NNC	ENSMUSG00000031309.16	novel	755	2	NA	NA	-141	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	12.7339779727836	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCACCTAAAATACACTGAA	NA	False	NA	-26	True	AATAAA	-19	NA	158038636	158146736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_158038716_158068261_158068319_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
transcript_148571.known	chrX	+	7244	22	FSM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	12.5162932360936	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTTTCTTTTTATCCG	NA	False	NA	NA	False	AATAAA	-16	NA	158038853	158151240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_158039185_158068261_158068319_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
transcript_148575.known	chrX	+	5172	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	0	0	0	0	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTAAGTTGTGGCCAAC	5347	False	NA	NA	False	AATATA	-11	NA	158155173	158172924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
transcript_148580.known	chrX	+	416	2	FSM	ENSMUSG00000067194.7	ENSMUST00000133252.2	416	2	0	0	0	0	multi-exon	FALSE	canonical	3	2574	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGCTGCCTCTGATAAT	5347	False	NA	NA	False	NA	NA	NA	158155173	158159554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_158155412_158159376
transcript_148584.nic	chrX	+	1615	10	NIC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	-69	-1418	combination_of_known_junctions	FALSE	canonical	1	49	junction_5	37.9326889224701	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGGCAGGAGGAAGAAGAGA	NA	False	NA	NA	False	TATAAA	-18	NA	158197498	158272356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073_158265373_158265955_158266083_158272272
transcript_148586.nic	chrX	+	1532	9	NIC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	-69	-3536	combination_of_known_junctions	FALSE	canonical	1	49	junction_5	40.2241764987178	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACAGACACTTAGATTTG	NA	False	NA	NA	False	NA	NA	NA	158197498	158266083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073_158265373_158265955
transcript_148587.nic	chrX	+	1213	8	NIC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	-69	-4438	combination_of_known_junctions	FALSE	canonical	1	49	junction_5	35.0585516075084	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGGCAGAGAAGGAGA	NA	False	NA	NA	False	AAGAAA	-8	NA	158197498	158265181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073
transcript_148588.nic	chrX	+	815	6	NIC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	26	-70	combination_of_known_junctions	FALSE	canonical	1	49	junction_5	39.8477100973193	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAATACACCTATATCTG	NA	False	NA	NA	False	NA	NA	NA	158197593	158253019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958
transcript_148589.nic	chrX	+	436	2	ISM	ENSMUSG00000041020.15	ENSMUST00000112471.9	3670	17	-44	54764	-44	-26100	5prime_fragment	FALSE	canonical	3	161	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGGGTAAGTTGTATAC	NA	False	NA	NA	False	AAGAAA	-9	NA	158197523	158226989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_+_158197889_158226918
transcript_14860.known	chr10	-	1307	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	35.9400542570542	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	7245	False	NA	-3	True	AATAAA	-12	NA	128204560	128198968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204387
transcript_148608.nic	chrX	+	1799	4	NIC	ENSMUSG00000044150.13	novel	578	4	NA	NA	-75	1860	intron_retention	FALSE	canonical	3	25	junction_1	277.359373777455	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGTAAAGAAGATTGCAGA	NA	False	NA	24	True	TATAAA	-45	NA	158309608	158336745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_158310201_158331234_158331312_158334746_158335371_158336239
transcript_14861.known	chr10	-	1434	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220227.2	1434	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	16.3248277173145	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	6939	False	NA	-3	True	AATAAA	-12	NA	128204866	128198968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204566
transcript_148610.known	chrX	+	3366	12	FSM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	0	0	0	0	multi-exon	TRUE	canonical	3	339	junction_9	109.675027103931	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158315663	158376077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
transcript_148611.known	chrX	+	2513	11	FSM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	176.193756983612	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTTGAAAGCTTTCTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	158315714	158375390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158350914_158351011_158357940_158358094_158375066
transcript_148615.known	chrX	+	7317	18	FSM	ENSMUSG00000040990.18	ENSMUST00000112456.9	7317	18	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	4.015540744912	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTAAGTCATTTATCAGT	NA	False	NA	NA	False	AATAAA	-29	NA	158410267	158761065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_158410688_158466539_158466698_158547007_158547132_158586715_158586820_158599572_158599703_158611369_158611576_158648320_158648397_158661117_158661213_158684671_158684780_158696984_158697037_158700231_158700313_158702753_158702914_158726192_158726279_158741208_158741319_158744760_158744890_158749209_158749479_158754857_158754922_158756120
transcript_14862.known	chr10	-	1421	5	FSM	ENSMUSG00000039914.7	ENSMUST00000043211.7	1421	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	37.9629753839185	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	6982	False	NA	-3	True	AATAAA	-12	NA	128204823	128198968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128199661_128200273_128200376_128200891_128201115_128203875_128204023_128204566
transcript_148624.known	chrX	-	2848	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	0	0	0	0	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCTTGAGTTCCCTTTC	NA	False	NA	-1	True	ATTAAA	-24	NA	158921409	158905204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
transcript_148635.known	chrX	-	457	2	FSM	ENSMUSG00000031299.11	ENSMUST00000127535.2	457	2	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAATCAAAGTTTCTATA	NA	False	NA	NA	False	AATAAA	-10	NA	158921352	158919892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_158920249_158921251
transcript_148636.known	chrX	+	4632	27	FSM	ENSMUSG00000031298.16	ENSMUST00000112401.8	4632	27	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_4	2.9990136445566	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTTAAGTTTGGTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	159173719	159281066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_159173746_159213345_159213391_159221190_159221310_159239000_159239034_159241830_159241870_159244338_159244378_159248573_159248628_159251887_159251944_159252763_159252820_159254751_159254792_159255307_159255346_159257699_159257795_159258486_159258554_159260044_159260437_159261980_159262144_159263222_159263380_159264542_159264687_159265284_159265408_159266078_159266125_159266229_159266334_159267135_159267258_159268639_159268909_159270661_159270762_159271679_159271964_159274393_159274496_159275595_159275749_159279300
transcript_148637.known	chrX	+	4641	27	FSM	ENSMUSG00000031298.16	ENSMUST00000112402.8	4641	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3.1500915737605	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTTAAGTTTGGTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	159173719	159281066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_159173746_159213345_159213391_159221190_159221310_159239000_159239034_159241830_159241879_159244338_159244378_159248573_159248628_159251887_159251944_159252763_159252820_159254751_159254792_159255307_159255346_159257699_159257795_159258486_159258554_159260044_159260437_159261980_159262144_159263222_159263380_159264542_159264687_159265284_159265408_159266078_159266125_159266229_159266334_159267135_159267258_159268639_159268909_159270661_159270762_159271679_159271964_159274393_159274496_159275595_159275749_159279300
transcript_148642.known	chrX	+	3947	34	FSM	ENSMUSG00000031295.14	ENSMUST00000112377.8	3947	34	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	19.1295904422098	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285161	159374137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_159285289_159285742_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
transcript_148643.nnic	chrX	+	3978	34	NNC	ENSMUSG00000031295.14	novel	3947	34	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	19.0057262648391	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285157	159374137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_159285289_159285715_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
transcript_148647.known	chrX	+	4133	33	FSM	ENSMUSG00000031295.14	ENSMUST00000033652.9	4133	33	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_12	13.3855098894289	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285429	159374137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
transcript_14865.known	chr10	-	1130	7	FSM	ENSMUSG00000025374.14	ENSMUST00000026439.14	1130	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	32.5444140965679	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245743	128237263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
transcript_148653.known	chrX	+	2310	15	FSM	ENSMUSG00000031295.14	ENSMUST00000112376.2	2310	15	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_12	6.08821209638858	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATATGTCACTTGGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	159285460	159341951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462
transcript_14867.known	chr10	-	1371	6	FSM	ENSMUSG00000025374.14	ENSMUST00000164199.8	1371	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	33.0732520324204	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245597	128237263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115
transcript_148703.nnic	chrX	+	864	6	NNC	ENSMUSG00000000037.18	novel	1257	12	NA	NA	-5666	-9589	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	102.568221199356	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGTAAGCTAATACCCAAT	NA	False	NA	NA	False	NA	NA	NA	159940079	159975440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_159940262_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199
transcript_148706.known	chrX	+	5010	15	FSM	ENSMUSG00000108981.2	ENSMUST00000207320.2	5010	15	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	5.75210697865378	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACATAAATATTTTGTTTT	NA	False	NA	NA	False	AATAAA	-29	NA	160081374	160149248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_160081394_160083835_160084019_160090688_160090874_160106160_160106266_160107235_160107483_160109457_160109572_160114803_160114930_160116053_160116204_160117551_160117699_160123836_160123936_160136646_160136851_160137986_160138109_160140870_160141061_160143316_160143521_160146333
transcript_148716.known	chrX	+	2244	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	3938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTATATCTGCATCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	161543397	161562088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
transcript_148718.known	chrX	+	1862	12	FSM	ENSMUSG00000031353.14	ENSMUST00000112327.8	1862	12	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	868.427533053443	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGATTGGCTTTGCAGA	NA	False	NA	-32	True	NA	NA	NA	161543416	161561752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552786_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
transcript_14872.nnic	chr10	+	2316	7	NNC	ENSMUSG00000025373.15	novel	3144	7	NA	NA	-50	0	intron_retention	FALSE	canonical	1	1	junction_4	49.1711862329511	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCTTTCTTATGCCCT	176	False	NA	NA	False	AAGAAA	-29	NA	128247475	128275286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271408_128272336_128272473_128273176_128273281_128273951
transcript_148728.known	chrX	-	3715	11	FSM	ENSMUSG00000038344.15	ENSMUST00000112316.9	3715	11	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_9	58.6501491899211	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612450	161561914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
transcript_148729.known	chrX	+	1430	10	FSM	ENSMUSG00000031353.14	ENSMUST00000112326.8	1430	10	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	178.323675750959	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	161543457	161558891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731
transcript_14873.known	chr10	+	3144	7	FSM	ENSMUSG00000025373.15	ENSMUST00000096386.13	3144	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_5	11.6535640709422	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTAGTCACCCCCCT	315	False	NA	NA	False	AATAAA	-17	NA	128247614	128276207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176_128273281_128273951
transcript_148732.known	chrX	-	3862	10	FSM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	53.4535681747934	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612450	161561914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
transcript_148744.known	chrX	-	2525	6	FSM	ENSMUSG00000038344.15	ENSMUST00000112315.2	2525	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	64.8382603097893	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATGTCTCATCTCCA	NA	False	NA	-7	True	AATAAA	-16	NA	161612450	161571913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
transcript_148754.known	chrX	-	2087	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTATAGAATGGTCTT	NA	False	NA	NA	False	TATAAA	-15	NA	161671443	161640052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
transcript_148757.nic	chrX	-	3435	5	ISM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	-42	12844	-42	-11992	5prime_fragment	FALSE	canonical	3	120	junction_2	7.90569415042095	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTCTATCTACTCCTC	NA	False	NA	NA	False	AAAAAG	-1	NA	161671485	161652896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
transcript_148759.nic	chrX	-	520	2	ISM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	-42	25931	-42	-25079	5prime_fragment	FALSE	canonical	3	138	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATGATATCCTTGACAAG	NA	False	NA	NA	False	AAGAAA	-20	NA	161671485	161665983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_161666083_161671064
transcript_148762.known	chrX	+	3353	19	FSM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	0	0	0	0	multi-exon	FALSE	canonical	2	133	junction_1	30.7828415409191	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGGCAGACTTGTACTT	NA	False	NA	NA	False	AATAAA	-22	NA	161684627	161815504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_148763.known	chrX	+	3099	19	FSM	ENSMUSG00000031360.15	ENSMUST00000112301.8	3099	19	0	0	0	0	multi-exon	FALSE	canonical	2	41	junction_1	44.8724185955837	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATGCAGTGTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	161684865	161815321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_161684911_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_148764.nnic	chrX	+	2179	19	NNC	ENSMUSG00000031360.15	novel	3289	19	NA	NA	-27	0	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_1	50.5288390945895	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGGCCCGGCAGAAAGT	NA	False	NA	11	True	ATTAAA	-17	NA	161684573	161814315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_161684705_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_14877.known	chr10	+	1984	6	FSM	ENSMUSG00000025373.15	ENSMUST00000217826.2	1984	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	52.5714751552589	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCTTTCTTATGCCCT	282	False	NA	NA	False	AAGAAA	-29	NA	128247581	128275286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128247695_128250987_128251171_128264459_128264573_128272336_128272473_128273176_128273281_128273951
transcript_148771.known	chrX	+	3199	5	FSM	ENSMUSG00000031367.16	ENSMUST00000112294.9	3199	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	15.8192920195564	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTCATGTGAATGAC	NA	False	NA	-2	True	AATAAA	-13	NA	162692140	162712542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162709898
transcript_148773.known	chrX	+	1785	5	FSM	ENSMUSG00000031367.16	ENSMUST00000033734.14	1785	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	61.936963923008	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTGGTGTGCTTTTC	NA	False	NA	2	True	AATAAA	-9	NA	162692137	162716355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162715128
transcript_148776.known	chrX	-	2735	11	FSM	ENSMUSG00000031370.13	ENSMUST00000112289.9	2735	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	287.175643117588	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTATTTCTTAGAGTAA	NA	False	NA	NA	False	AATAGA	-38	NA	162741585	162718438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_162719962_162722301_162722412_162723114_162723171_162726095_162726310_162732255_162732375_162733182_162733222_162736565_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
transcript_14878.nic	chr10	+	2371	3	ISM	ENSMUSG00000025373.15	ENSMUST00000217826.2	1984	6	-106	8858	-50	-8858	5prime_fragment	FALSE	canonical	3	130	junction_1	10	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTGGTTGTGTTGGCT	176	False	NA	NA	False	ATTAAA	-18	NA	128247475	128266428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_128247695_128250987_128251171_128264459
transcript_148784.known	chrX	-	460	6	FSM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_5	268.200372855818	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGGAAGAACAGCAGAGAA	NA	False	NA	-16	True	TTTAAA	-19	NA	162741548	162736635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741522
transcript_148785.nic	chrX	-	1566	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	-31	978	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTGAAGATATTTT	NA	False	NA	-10	True	AATATA	-15	NA	162741688	162735608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
transcript_148787.nic	chrX	-	1254	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	-31	666	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTATCCTGTCTAACTT	NA	False	NA	-15	True	ATTAAA	-28	NA	162741688	162735920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
transcript_14879.known	chr10	+	3283	8	FSM	ENSMUSG00000025373.15	ENSMUST00000171342.3	3283	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	46.3553268409426	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTCTCTCTGAGTCTT	226	False	NA	NA	False	AATATA	-39	NA	128247525	128277310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176_128273281_128273951_128274329_128275381
transcript_148790.nic	chrX	-	539	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGGAAGAACAGCAGAGAA	NA	False	NA	-16	True	TTTAAA	-19	NA	162741688	162736635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
transcript_148791.known	chrX	-	3867	5	FSM	ENSMUSG00000031370.13	ENSMUST00000090840.10	3867	5	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	78.6924392810389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTTTTAAAAACTTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	162741594	162733381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
transcript_148797.nic	chrX	-	525	5	ISM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	-118	770	-9	-770	5prime_fragment	FALSE	canonical	3	79	junction_4	299.087779757047	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGGAAGCTCGAAAACG	NA	False	NA	NA	False	AAGAAA	-36	NA	162741666	162737405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741522
transcript_148798.nic	chrX	-	486	5	NIC	ENSMUSG00000031370.13	novel	382	4	NA	NA	-31	-770	combination_of_known_junctions	FALSE	canonical	3	185	junction_4	254.236602400205	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGGAAGCTCGAAAACG	NA	False	NA	NA	False	AAGAAA	-36	NA	162741688	162737405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
transcript_14880.known	chr10	+	4562	29	FSM	ENSMUSG00000025369.16	ENSMUST00000099131.11	4562	29	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_18	29.4428493449771	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTTTTCTTTTTCCTTT	2681	False	NA	-4	True	NA	NA	NA	128295176	128325991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317550_128317644_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
transcript_148801.nic	chrX	-	657	4	ISM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	-143	770	-34	-770	intron_retention	FALSE	canonical	3	708	junction_2	67.6477806156434	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGGAAGCTCGAAAACG	NA	False	NA	NA	False	AAGAAA	-36	NA	162741691	162737405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_162737479_162739467_162739550_162740911_162740992_162741269
transcript_148802.known	chrX	-	382	4	FSM	ENSMUSG00000031370.13	ENSMUST00000127370.3	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_3	246.780604316196	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGTACTAACTGAAACAC	NA	False	NA	NA	False	AAGAAA	-38	NA	162741657	162739467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_162739550_162740911_162740992_162741269_162741416_162741583
transcript_148804.nic	chrX	-	584	3	ISM	ENSMUSG00000031370.13	ENSMUST00000127370.3	382	4	-34	0	-34	0	intron_retention	FALSE	canonical	3	708	junction_1	0.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGTACTAACTGAAACAC	NA	False	NA	NA	False	AAGAAA	-38	NA	162741691	162739467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_162739550_162740911_162740992_162741269
transcript_148810.known	chrX	-	1783	4	FSM	ENSMUSG00000040749.12	ENSMUST00000037928.9	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	206.108385726216	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859117	162853700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859010
transcript_148811.known	chrX	-	1712	4	FSM	ENSMUSG00000040749.12	ENSMUST00000071667.9	1712	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_3	112.11402925395	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859146	162853700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859110
transcript_148812.known	chrX	-	803	4	FSM	ENSMUSG00000040749.12	ENSMUST00000134272.2	803	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	219.75794765049	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAACTTACATGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	162859489	162854880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859182
transcript_148817.known	chrX	+	1599	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGCTTTTTTATATG	NA	False	NA	NA	False	TATAAA	-15	NA	163052426	163156007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
transcript_148821.nnic	chrX	+	1249	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	1	-224	combination_of_known_splicesites	FALSE	canonical	3	32	junction_6	81.4048524352203	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052507	163155783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163141143_163141227_163152041_163152109_163155448
transcript_148822.nnic	chrX	+	1203	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	-37	-224	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	80.2507788124203	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052469	163155783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_+_163052674_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
transcript_148826.known	chrX	+	439	2	FSM	ENSMUSG00000031379.14	ENSMUST00000127685.2	439	2	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAACTGGGGCCCCGTGTG	NA	False	NA	NA	False	NA	NA	NA	163052506	163054870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_163052674_163054598
transcript_14883.known	chr10	+	4533	28	FSM	ENSMUSG00000025369.16	ENSMUST00000026433.9	4533	28	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_11	16.862633913377	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTTGTGGGTGCCTCTGT	2667	False	NA	46	True	TATAAA	-19	NA	128295162	128326041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
transcript_148837.known	chrX	+	831	6	FSM	ENSMUSG00000031381.17	ENSMUST00000208261.2	831	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	93.3967879533338	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAGATATCCCAAAGCAG	NA	False	NA	NA	False	AAGAAA	-13	NA	163202802	163214868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_163202837_163205579_163205661_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_148838.known	chrX	+	3212	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112257.10	3212	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	78.77715404862	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTTGTCTCAGTTT	NA	False	NA	23	True	AATAAA	-23	NA	163202782	163216907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_163202837_163205579_163205983_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_148840.known	chrX	+	3594	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202782	163216912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_148842.known	chrX	+	3903	6	FSM	ENSMUSG00000031381.17	ENSMUST00000151911.9	3903	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	95.333939392013	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202782	163216912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_163202837_163205579_163206669_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_148849.known	chrX	+	1139	7	FSM	ENSMUSG00000031384.3	ENSMUST00000033756.3	1139	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.25830573921179	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACGAGTGGTTTCTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	163289322	163322748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_163289583_163297924_163298005_163312403_163312512_163314577_163314729_163316452_163316588_163318365_163318558_163322535
transcript_148850.known	chrX	-	2487	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112248.9	2487	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	17.7207649441011	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTCTCTAATTGATA	NA	False	NA	NA	False	AATAAA	-18	NA	163763371	163719164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_163720081_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_148851.known	chrX	-	2479	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112247.9	2479	15	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	17.508598470699	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTCTGGTGCTTTTCAT	NA	False	NA	NA	False	TATAAA	-39	NA	163763293	163719313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_163720300_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_148852.known	chrX	-	2015	15	FSM	ENSMUSG00000061778.11	ENSMUST00000004715.2	2015	15	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_12	10.321366781822	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGTAGTCTGC	NA	False	NA	NA	False	AATACA	-40	NA	163763331	163721204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_163721689_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_148859.known	chrX	+	2395	9	FSM	ENSMUSG00000047757.18	ENSMUST00000057150.8	2395	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	35.8468966578698	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGTTTTCTTTTACTGG	NA	False	NA	NA	False	ATTAAA	-20	NA	163763707	163780268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778419_163778974_163779118_163779765
transcript_148860.known	chrX	+	2953	9	FSM	ENSMUSG00000047757.18	ENSMUST00000167446.8	2953	9	0	0	0	0	multi-exon	TRUE	canonical	3	98	junction_5	7.72981241687015	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTTGTTTTCTTTTAC	NA	False	NA	NA	False	ATTAAA	-17	NA	163763587	163780265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778768_163778882_163779118_163779765
transcript_148866.nnic	chrX	+	2200	7	NNC	ENSMUSG00000040621.15	novel	1928	5	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.3189337389853	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGACTGGATTTGATCT	NA	False	NA	NA	False	NA	NA	NA	164953396	164973506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_164953547_164959840_164959999_164960055_164960076_164961529_164961639_164961787_164961827_164963348_164963806_164972239
transcript_148867.nnic	chrX	+	1385	6	NNC	ENSMUSG00000040621.15	novel	1389	5	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.6719040271741	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953396	164972800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrX_+_164953547_164959840_164959999_164960055_164960076_164961787_164961827_164963348_164963806_164972239
transcript_148869.known	chrX	+	1928	5	FSM	ENSMUSG00000040621.15	ENSMUST00000087169.11	1928	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.8371663140649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGACTGGATTTGATCT	NA	False	NA	NA	False	NA	NA	NA	164953490	164973506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_164953547_164961529_164961639_164961787_164961827_164963348_164963806_164972239
transcript_148871.known	chrX	+	1862	4	FSM	ENSMUSG00000040621.15	ENSMUST00000056410.11	1862	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	17.1529071070248	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACTGGATTTGATCTAC	NA	False	NA	NA	False	NA	NA	NA	164953449	164973508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_164953547_164961787_164961827_164963348_164963806_164972239
transcript_148873.known	chrX	+	1389	5	FSM	ENSMUSG00000040621.15	ENSMUST00000130880.9	1389	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	17.0293863659264	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953449	164972800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_164953547_164959840_164960076_164961787_164961827_164963348_164963806_164972239
transcript_148874.known	chrX	+	2858	7	FSM	ENSMUSG00000031342.18	ENSMUST00000060210.14	2858	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGCTTGCCTTTTTACCAT	NA	False	NA	-15	True	AATAAA	-13	NA	165021967	165171984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_165022133_165155633_165155821_165158628_165158786_165162983_165163156_165165444_165165519_165166930_165166997_165169947
transcript_148875.known	chrX	-	4453	23	FSM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_14	25.8655535317559	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACTCTGACTTCTTTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	165223700	165173028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_165174055_165174886_165174955_165175413_165175567_165176172_165176328_165183915_165184030_165186537_165186636_165188421_165188579_165188992_165189605_165191584_165191697_165192483_165192615_165193601_165193792_165194811_165194904_165196296_165196371_165197971_165198092_165207971_165208079_165209815_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
transcript_148876.nic	chrX	-	3333	21	ISM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	-35	2446	-35	-2446	5prime_fragment	FALSE	canonical	3	107	junction_12	23.1667865704331	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACTTTAGAAAAATACATGA	NA	False	NA	NA	False	NA	NA	NA	165223735	165175474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_165175567_165176172_165176328_165183915_165184030_165186537_165186636_165188421_165188579_165188992_165189605_165191584_165191697_165192483_165192615_165193601_165193792_165194811_165194904_165196296_165196371_165197971_165198092_165207971_165208079_165209815_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
transcript_14888.known	chr10	+	4032	28	FSM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_27	21.277769719239	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTTTTTAATTATTATT	2694	False	NA	NA	False	AAAAAG	-24	NA	128295189	128325225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128324229_128324764
transcript_148880.nic	chrX	-	1568	11	ISM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	-35	23280	-35	-23280	5prime_fragment	FALSE	canonical	3	107	junction_2	11.993331480452	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAATAAAGGTGATGTG	NA	False	NA	NA	False	AATAAA	-17	NA	165223735	165196308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_165196371_165197971_165198092_165207971_165208079_165209815_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
transcript_148881.nic	chrX	-	1221	8	ISM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	-35	36845	-35	-36845	5prime_fragment	FALSE	canonical	3	123	junction_2	9.83952877584147	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCCTCATTTCTCAGG	NA	False	NA	NA	False	AATGAA	-27	NA	165223735	165209873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
transcript_148883.nic	chrX	-	1138	8	ISM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	-35	36928	-35	-36928	5prime_fragment	FALSE	canonical	3	123	junction_2	9.83952877584147	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAGATGGAAGAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	165223735	165209956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
transcript_148887.known	chrX	+	1613	5	FSM	ENSMUSG00000079317.11	ENSMUST00000116495.8	1613	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	101.671038157383	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	9	True	AATAAA	-14	NA	165223569	165236136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_165223836_165229786_165229899_165232783_165232929_165233624_165233711_165235132
transcript_148889.nic	chrX	-	859	5	ISM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	-35	41657	-35	-41657	5prime_fragment	FALSE	canonical	3	128	junction_1	10.8483869768736	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGAGTCTTCATCTTTG	NA	False	NA	NA	False	AATAAA	-4	NA	165223735	165214685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
transcript_148890.nic	chrX	-	829	4	ISM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	-35	41769	-35	-41769	5prime_fragment	FALSE	canonical	3	129	junction_1	10.7082522694727	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGATTGTTTTTATGATC	NA	False	NA	NA	False	TATAAA	-7	NA	165223735	165214797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_165214867_165218330_165218532_165223024_165223124_165223275
transcript_148891.known	chrX	+	1294	4	FSM	ENSMUSG00000079317.11	ENSMUST00000112192.8	1294	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	114.126635317479	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTGGTCATTTGATG	NA	False	NA	7	True	AATAAA	-12	NA	165223771	165236134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_165223836_165229786_165229899_165232783_165232900_165235132
transcript_148896.known	chrX	-	1447	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_2	7.5	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTTGCAATGCTTTTTAA	NA	False	NA	-8	True	ATTAAA	-24	NA	165262863	165240248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_165241340_165245310_165245339_165262535
transcript_148899.known	chrX	-	4050	5	FSM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	3.35410196624968	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTATTCTCCAATATTT	NA	False	NA	-2	True	AATAAA	-20	NA	165293474	165282807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_165286402_165288701_165288833_165290704_165290743_165291901_165292003_165293288
transcript_148903.known	chrX	-	2704	12	FSM	ENSMUSG00000000402.3	ENSMUST00000000412.3	2704	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	3.09892009982897	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGTTGAAACACTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	165368716	165306002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_165306968_165310309_165310576_165314967_165315070_165319195_165319277_165321409_165321731_165329416_165329540_165331818_165331954_165335420_165335541_165339965_165340086_165345937_165346031_165351404_165351518_165368451
transcript_148904.known	chrX	+	801	1	FSM	ENSMUSG00000067147.8	ENSMUST00000118791.2	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTGAATTTTCTGT	NA	False	NA	NA	False	AAAAAG	-36	NA	165637206	165638007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_+_165637200_165638000
transcript_148906.known	chrX	-	698	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112176.8	698	3	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_2	586	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTGTGTCTGCTTGGT	NA	False	NA	-2	True	AATAAA	-13	NA	165992145	165990090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_165990532_165990932_165991048_165992003
transcript_148907.known	chrX	-	3699	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	0	0	0	0	multi-exon	TRUE	canonical	3	187	junction_5	11.6535640709422	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTTGTCATCCTTTTG	NA	False	NA	-3	True	AATAAA	-24	NA	166165745	166129317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
transcript_14891.nic	chr10	+	2477	23	ISM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	-77	5203	-4	2449	5prime_fragment	FALSE	canonical	3	73	junction_11	16.5350241848444	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAGGGAAAGAAGGTGA	2617	False	NA	NA	False	NA	NA	NA	128295112	128320022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947
transcript_148912.known	chrX	-	599	3	FSM	ENSMUSG00000025742.6	ENSMUST00000145456.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	111.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTATGTCCTAAGAT	NA	False	NA	NA	False	AATAAA	-25	NA	166165706	166155404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_166155579_166156998_166157183_166165465
transcript_148915.nic	chrX	-	2439	12	ISM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	1342	0	-37	0	3prime_fragment	TRUE	canonical	3	23	junction_11	7.54928708800971	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167455552	167437112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258
transcript_148916.known	chrX	-	2316	12	FSM	ENSMUSG00000031358.18	ENSMUST00000112137.2	2316	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	6.17646827325928	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167456894	167437112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167456723
transcript_148921.known	chrX	-	2473	7	FSM	ENSMUSG00000031352.11	ENSMUST00000112115.2	2473	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_6	157.36096155725	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	False	NA	0	True	AATAAA	-25	NA	168103290	168094525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168102971
transcript_148922.known	chrX	-	2320	7	FSM	ENSMUSG00000031352.11	ENSMUST00000033717.9	2320	7	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	111.381351920129	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	False	NA	0	True	AATAAA	-25	NA	168103276	168094525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103110
transcript_148923.nic	chrX	-	2486	7	NIC	ENSMUSG00000031352.11	novel	2473	7	NA	NA	-134	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_6	191.804950115707	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	False	NA	0	True	AATAAA	-25	NA	168103502	168094525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103170
transcript_148929.nic	chrX	-	2257	7	NIC	ENSMUSG00000031352.11	novel	2473	7	NA	NA	-134	-229	combination_of_known_junctions	FALSE	canonical	3	62	junction_6	191.804950115707	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTTTTTATTTTAAT	NA	False	NA	NA	False	AAAAAG	-10	NA	168103502	168094754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103170
transcript_14894.known	chr10	-	691	7	FSM	ENSMUSG00000090841.3	ENSMUST00000218127.2	691	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	1160.32375750142	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8242	False	NA	-5	True	AATAAA	-20	NA	128329726	128326729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128326903_128327588_128327634_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_148949.nnic	chrY	+	1038	5	NNC	ENSMUSG00000096768.9	novel	708	5	NA	NA	-625	0	intron_retention	FALSE	non_canonical	0	0	junction_2	752.144600459247	146	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	3327	False	NA	NA	False	AATAAA	-17	NA	90795381	90827733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrY_+_90795676_90795777_90795894_90796858_90797249_90804564_90804687_90827617
transcript_14895.known	chr10	-	692	7	FSM	ENSMUSG00000090841.3	ENSMUST00000219236.2	692	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1170.06704461278	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	8252	False	NA	-7	True	AATAAA	-18	NA	128329716	128326731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128326903_128327158_128327217_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_148950.nnic	chrY	+	1019	5	NNC	ENSMUSG00000096768.9	novel	708	5	NA	NA	-552	0	intron_retention	FALSE	canonical	3	234	junction_2	696.056211810512	96	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	3400	False	NA	NA	False	AATAAA	-17	NA	90795454	90827733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrY_+_90795676_90795777_90795948_90796858_90797249_90804564_90804687_90827617
transcript_148954.nnic	chrY	+	1747	5	NNC	ENSMUSG00000096768.9	novel	708	5	NA	NA	-625	0	intron_retention	FALSE	non_canonical	0	0	junction_2	752.144600459247	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	3327	False	NA	NA	False	AATAAA	-17	NA	90795381	90827733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrY_+_90795676_90795777_90796258_90796513_90797249_90804564_90804687_90827617
transcript_148963.nnic	chrY	+	786	4	NNC	ENSMUSG00000096768.9	novel	774	4	NA	NA	131	0	intron_retention	FALSE	non_canonical	0	0	junction_1	847.613250381459	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	4256	False	NA	NA	False	AATAAA	-17	NA	90796310	90827733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrY_+_90796469_90796858_90797249_90804564_90804687_90827617
transcript_148966.nnic	chrY	+	1090	3	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	1917	5937	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1008.5	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	90803636	90833671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chrY_+_90804081_90804157_90804687_90833554
transcript_14897.known	chr10	-	608	6	FSM	ENSMUSG00000090841.3	ENSMUST00000217969.2	608	6	0	0	0	0	multi-exon	FALSE	canonical	2	43	junction_4	956.330152196405	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	8242	False	NA	-7	True	AATAAA	-18	NA	128329726	128326731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328579_128329407_128329436_128329677
transcript_14898.known	chr10	-	665	6	FSM	ENSMUSG00000090841.3	ENSMUST00000164181.2	665	6	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_3	223.361948415571	1089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTCTTTCTTTCTTTC	8224	False	NA	-4	True	AATAAA	-21	NA	128329744	128326728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_14899.known	chr10	-	1668	5	FSM	ENSMUSG00000090841.3	ENSMUST00000217733.2	1668	5	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_2	245.142305610435	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8245	False	NA	-5	True	AATAAA	-20	NA	128329723	128326729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_14903.known	chr10	-	1026	7	FSM	ENSMUSG00000039824.5	ENSMUST00000026428.4	1026	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.63299316185545	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGTTTCCGACAGTTTT	3414	False	NA	-10	True	AATAAA	-14	NA	128334554	128330025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128330353_128330458_128330537_128330922_128331097_128332121_128332266_128332482_128332511_128333069_128333287_128334496
transcript_14905.known	chr10	-	3981	31	FSM	ENSMUSG00000025366.9	ENSMUST00000026427.8	3981	31	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_22	28.253790306199	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGGTGCACTGTGTGAA	8319	False	NA	NA	False	AATATA	-21	NA	128361739	128345833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128346529_128346848_128346899_128347334_128347441_128347523_128347656_128347737_128347837_128347926_128348088_128348195_128348334_128351554_128351642_128351733_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
transcript_14915.nnic	chr10	-	3641	30	NIC	ENSMUSG00000025366.9	novel	3981	31	NA	NA	-88	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	46.0395063770619	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAAACAGTGCTTCATG	8230	False	NA	-13	True	AATAAA	-7	NA	128361828	128346124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_128346529_128346848_128346899_128347334_128347441_128347523_128347656_128347737_128347837_128347926_128348088_128351554_128351642_128351733_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
transcript_1492.known	chr1	+	2834	23	FSM	ENSMUSG00000026104.15	ENSMUST00000186574.7	2834	23	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_12	6.78598458418965	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGATGAGTGGGAAAGCAG	3248	False	NA	NA	False	AATAAA	-16	NA	52158598	52194571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_52158783_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144
transcript_14932.known	chr10	-	565	5	FSM	ENSMUSG00000039810.12	ENSMUST00000133458.2	565	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.92820323027551	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACGAGGCAAGCGATGTC	NA	False	NA	NA	False	NA	NA	NA	128383594	128381206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128381408_128381709_128381904_128382696_128382761_128383039_128383114_128383562
transcript_14935.known	chr10	-	992	3	FSM	ENSMUSG00000039810.12	ENSMUST00000152539.8	992	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	46	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCCATCTGCCGCGACT	NA	False	NA	NA	False	NA	NA	NA	128383508	128380948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128381408_128382696_128382761_128383039
transcript_14936.known	chr10	-	3721	3	FSM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	17	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGTTAGGAATATTATTA	NA	False	NA	NA	False	ATTAAA	-15	NA	128383643	128377831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128381408_128382696_128382761_128383562
transcript_14938.known	chr10	-	582	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176010.8	582	4	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_3	6241.33064516071	11164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385174	128383982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956
transcript_14939.known	chr10	-	680	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177513.2	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_2	7636	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCTGTTACGTGTTTT	NA	False	NA	-21	True	AATAAA	-26	NA	128385007	128383985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128384299_128384526_128384843_128384956
transcript_14940.known	chr10	-	523	2	FSM	ENSMUSG00000093674.8	ENSMUST00000176966.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAGGAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	128384981	128384344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128384843_128384956
transcript_14941.known	chr10	-	544	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	15318	junction_2	3514.5	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385022	128383982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128384299_128384526_128384550_128384817
transcript_14942.known	chr10	-	695	3	FSM	ENSMUSG00000093674.8	ENSMUST00000176184.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	10878.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAAACTGCTGTTACGTG	NA	False	NA	-25	True	AATAAA	-22	NA	128385028	128383989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128384299_128384526_128384841_128384956
transcript_14945.known	chr10	-	2483	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	0	0	0	0	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	8692	False	NA	-7	True	AATAAA	-12	NA	128401856	128393636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
transcript_14961.nic	chr10	-	1555	11	ISM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-280	1298	-280	-1298	5prime_fragment	FALSE	canonical	3	1853	junction_10	120.601658363391	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTGTGTGATGTTAATA	8412	False	NA	NA	False	AAAAAG	-9	NA	128402136	128394934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
transcript_14970.known	chr10	-	684	2	FSM	ENSMUSG00000025364.14	ENSMUST00000147068.2	684	2	0	0	0	0	multi-exon	FALSE	canonical	3	1853	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTGCCTTCCAGTGAC	8810	False	NA	NA	False	NA	NA	NA	128401738	128399020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128399575_128401608
transcript_14971.known	chr10	-	6016	28	FSM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	16.414470513838	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTGGATTCCTGTC	NA	False	NA	0	True	AATAAA	-21	NA	128425521	128403391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412729_128412885_128413072_128413164_128413968_128414102_128414262_128414469_128414870_128414962_128415364_128415439_128417632_128417754_128417858_128417973_128418985_128419128_128419234_128419354_128419505_128419572_128420179_128420306_128420880_128421068_128422008_128422161_128425288
transcript_14972.nnic	chr10	-	5862	28	NNC	ENSMUSG00000018166.9	novel	6016	28	NA	NA	-903	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.6093665213766	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTGGATTCCTGTC	NA	False	NA	0	True	AATAAA	-21	NA	128426424	128403391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412729_128412885_128413072_128413164_128413968_128414102_128414262_128414469_128414870_128414962_128415364_128415439_128417632_128417754_128417858_128417973_128418985_128419128_128419234_128419354_128419505_128419572_128420179_128420306_128420880_128421068_128422008_128422161_128426345
transcript_14976.known	chr10	-	681	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462616	128460405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
transcript_14978.known	chr10	-	596	3	FSM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	0	0	0	0	multi-exon	FALSE	canonical	3	15147	junction_1	3128	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATCGGAGTGTGTTTAT	NA	False	NA	-9	True	NA	NA	NA	128462293	128460402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128460506_128461075_128461207_128461931
transcript_1498.known	chr1	-	4966	18	FSM	ENSMUSG00000026103.15	ENSMUST00000114513.9	4966	18	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	80.7225587298202	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAGAAAAAGTGTTTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	52272382	52202606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_52205474_52207494_52207559_52207643_52207721_52208055_52208118_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52239047_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750
transcript_14983.nnic	chr10	-	3362	6	NNC	ENSMUSG00000000711.4	novel	3180	6	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	69.0408574686033	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCACTGGACTGTTGTTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	128532158	128513043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616_128522878_128531897
transcript_14984.known	chr10	-	3180	6	FSM	ENSMUSG00000000711.4	ENSMUST00000000727.4	3180	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_5	17.0528589978338	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCACTGGACTGTTGTTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	128532133	128513043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616_128522878_128532054
transcript_14986.known	chr10	-	1629	4	FSM	ENSMUSG00000000711.4	ENSMUST00000220593.2	1629	4	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	13.5728487143349	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAGAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-3	NA	128532126	128517671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128518816_128519063_128519216_128522616_128522878_128532054
transcript_14995.known	chr10	-	2834	24	FSM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_14	14.5196561901106	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCGCAAGGTTCTGA	9991	False	NA	-10	True	AATAAA	-16	NA	128579944	128556002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877_128573014_128579664
transcript_15.known	ERCC-00044	+	1149	1	FSM	ERCC-00044A	DQ459424	1149	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAAAG	-27	NA	0	1149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00044_+_0_1100
transcript_1500.nnic	chr1	-	4166	16	NNC	ENSMUSG00000026103.15	novel	5596	15	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	66.1582614308716	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATTGTTTTTTTTA	NA	False	NA	-3	True	AATAAA	-13	NA	52272383	52224441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_52226954_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52239047_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750_52271967_52272209
transcript_15004.nic	chr10	+	2195	12	NIC	ENSMUSG00000025359.11	novel	2130	11	NA	NA	-52	-114	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	18.002295537739	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGGCTTTTGTTGCTG	NA	False	NA	4	True	AATAAA	-15	NA	128540996	128555993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_128541154_128542104_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
transcript_1501.known	chr1	-	5596	15	FSM	ENSMUSG00000026103.15	ENSMUST00000114510.8	5596	15	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_8	52.7471829211992	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTGGACAGTTCAAGTTA	NA	False	NA	NA	False	AATAAA	-18	NA	52272391	52223262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_52226954_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013_52239047_52246459_52246519_52251361_52251526_52253636_52253717_52254723_52254854_52258646_52258769_52259101_52259199_52271750
transcript_15012.known	chr10	-	2406	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	1209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8248	False	NA	-21	True	ATTAAA	-15	NA	128540899	128533812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
transcript_15020.known	chr10	-	2240	7	FSM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_2	273.112309011024	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGAATCTCTTTCATAT	8275	False	NA	-16	True	ATTAAA	-20	NA	128540872	128533807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
transcript_15025.known	chr10	-	2971	6	FSM	ENSMUSG00000025358.17	ENSMUST00000219099.2	2971	6	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_2	293.827160078846	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8247	False	NA	-21	True	ATTAAA	-15	NA	128540900	128533812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794
transcript_15026.nnic	chr10	+	1219	4	NIC	ENSMUSG00000064030.16	novel	1158	3	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	137.41502424731	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACATGTGGTCAGGCTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	128583747	128602428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_128583868_128586151_128586207_128601015_128601110_128601478
transcript_15027.known	chr10	+	1143	4	FSM	ENSMUSG00000064030.16	ENSMUST00000218218.2	1143	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	140.632697320202	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCAGGCTTTGGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	128584396	128602433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128584436_128586151_128586207_128601015_128601110_128601478
transcript_15029.known	chr10	+	1158	3	FSM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	26	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTCAGGCTTTGGCTC	NA	False	NA	NA	False	AATAAA	-15	NA	128583757	128602432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128583868_128601015_128601110_128601478
transcript_15031.known	chr10	+	1156	3	FSM	ENSMUSG00000064030.16	ENSMUST00000065210.10	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	117	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACATGTGGTCAGGCTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	128584323	128602428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128584436_128601015_128601110_128601478
transcript_15039.nnic	chr10	+	986	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1520.20222121546	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657759	128713498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
transcript_15040.nnic	chr10	+	983	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1539.19360662578	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657759	128713498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
transcript_1505.known	chr1	-	3874	8	FSM	ENSMUSG00000002881.15	ENSMUST00000069792.14	3874	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	3.6922422809486	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGCTTAGAGTGCTTTG	NA	False	NA	0	True	AATAAA	-21	NA	52539838	52496452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_52498466_52501246_52501364_52503943_52504107_52506048_52506139_52518396_52518449_52520029_52520164_52529079_52529915_52539368
transcript_15053.known	chr10	+	4133	7	FSM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_3	32.4242707448191	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGACTTTTGGAGCCC	4016	False	NA	NA	False	GATAAA	-30	NA	128641422	128655128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128641553_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
transcript_15058.known	chr10	+	2298	7	FSM	ENSMUSG00000025354.6	ENSMUST00000219508.2	2298	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	133.703236892588	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGGAAACATTTTAAA	4138	False	NA	7	True	TTTAAA	-8	NA	128641544	128653372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128641596_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
transcript_15078.known	chr10	-	2335	5	FSM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	8.20060973342836	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGGAGATGCGCCTCTA	5737	False	NA	-7	True	AATAAA	-18	NA	128640239	128635904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128640101
transcript_1508.known	chr1	+	3396	9	FSM	ENSMUSG00000043015.16	ENSMUST00000165859.8	3396	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	7.49061913328932	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGCTCCGAGTCAGTG	NA	False	NA	9	True	ATTAAA	-20	NA	52669861	52691078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682280_52682396_52684419_52684646_52687908_52688086_52688864
transcript_15087.known	chr10	-	724	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219524.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	240.049994792751	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCAGTCTTCATAGGG	NA	False	NA	NA	False	GATAAA	-45	NA	128657514	128654591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656305_128657410
transcript_15088.known	chr10	-	1573	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATCAGTTTCCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	128657463	128653770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
transcript_15095.known	chr10	-	666	3	FSM	ENSMUSG00000025353.6	ENSMUST00000217685.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	430	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGTATATTTTTCTTAA	NA	False	NA	-63	True	NA	NA	NA	128657460	128654420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128654885_128655822_128655975_128657410
transcript_15097.known	chr10	-	1051	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219215.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	384.57248991575	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657475	128654350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656430_128657410
transcript_15098.known	chr10	+	918	11	FSM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_8	1099.33345259753	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAATGTGTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	128657762	128713486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
transcript_15099.known	chr10	+	1084	12	FSM	ENSMUSG00000078427.4	ENSMUST00000220381.2	1084	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	1706.39307380042	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128687606_128687802_128689051_128689121_128708289_128708380_128713201
transcript_15100.known	chr10	+	953	12	FSM	ENSMUSG00000078427.4	ENSMUST00000219512.2	953	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1650.06371026512	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGTGTTTTATTAGGT	NA	False	NA	NA	False	AATAAA	-13	NA	128657765	128713493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128657841_128666819_128666854_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
transcript_15101.known	chr10	+	1109	9	FSM	ENSMUSG00000025351.15	ENSMUST00000219317.2	1109	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1695.03832921265	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	False	NA	35	True	ATTAAA	-27	NA	128736857	128748691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128737005_128744769_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
transcript_15103.known	chr10	+	1063	8	FSM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	0	0	0	0	multi-exon	FALSE	canonical	3	3700	junction_1	227.971623726484	1753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAGGAGATGGTCTCA	354	False	NA	28	True	ATTAAA	-20	NA	128745567	128748684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
transcript_15109.nic	chr10	+	595	5	ISM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	102	752	102	0	5prime_fragment	FALSE	canonical	3	3700	junction_1	153.310754678203	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGGATGGCCGGGAG	456	False	NA	NA	False	AAAACA	-31	NA	128745669	128747932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836
transcript_1511.known	chr1	+	2023	9	FSM	ENSMUSG00000043015.16	ENSMUST00000185483.7	2023	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	9.4794184948234	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTAATGTTTTGATAAG	NA	False	NA	NA	False	ATTAAA	-21	NA	52669905	52689795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682326_52682396_52684419_52684646_52687908_52688086_52688864
transcript_15111.known	chr10	-	550	4	FSM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	37.4788829431544	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTGTTTGAAGGAG	NA	False	NA	-1	True	AATAAA	-19	NA	128759393	128755782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_128755977_128756427_128756561_128758522_128758596_128759243
transcript_15113.known	chr10	+	4020	25	FSM	ENSMUSG00000025348.10	ENSMUST00000218290.2	4020	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.11476292340825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAATCTCTGGCTGCTT	NA	False	NA	NA	False	ATTAAA	-12	NA	128769688	128794148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128770064_128774908_128775037_128775136_128775217_128776550_128776807_128777313_128777446_128778676_128778885_128778986_128779181_128779421_128779511_128779619_128779748_128779873_128779970_128780109_128780172_128780272_128780443_128781273_128781424_128782155_128782272_128782667_128782861_128784685_128784767_128784851_128784932_128785029_128785105_128785242_128785346_128785831_128786009_128786172_128786302_128789311_128789426_128789628_128789728_128789814_128789941_128793489
transcript_15114.known	chr10	+	4013	25	FSM	ENSMUSG00000025348.10	ENSMUST00000099112.4	4013	25	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	1.99956592511697	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCTCTGGCTGCTTTAT	NA	False	NA	NA	False	ATTAAA	-15	NA	128769686	128794151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_128770064_128774908_128775037_128775136_128775217_128776550_128776807_128777690_128777811_128778676_128778885_128778986_128779181_128779421_128779511_128779619_128779748_128779873_128779970_128780109_128780172_128780272_128780443_128781273_128781424_128782155_128782272_128782667_128782861_128784685_128784767_128784851_128784932_128785029_128785105_128785242_128785346_128785831_128786009_128786172_128786302_128789311_128789426_128789628_128789728_128789814_128789941_128793489
transcript_15116.known	chr10	+	415	3	FSM	ENSMUSG00000112742.2	ENSMUST00000218557.2	415	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAAAAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	130378215	130407662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_130378320_130407161_130407289_130407478
transcript_1513.known	chr1	+	3247	8	FSM	ENSMUSG00000043015.16	ENSMUST00000188507.7	3247	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	15.6466075086778	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGCTCCGAGTCAGTG	NA	False	NA	9	True	ATTAAA	-20	NA	52669895	52691078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52684419_52684646_52687908_52688086_52688864
transcript_15131.known	chr11	+	3614	19	FSM	ENSMUSG00000020454.18	ENSMUST00000110049.8	3614	19	0	0	0	0	multi-exon	TRUE	canonical	3	81	junction_10	64.4808326386825	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGGTACTGTGTTTATT	3844	False	NA	14	True	ATTAAA	-30	NA	3152662	3194588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3152798_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3183987_3184060_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
transcript_15135.known	chr11	+	3565	18	FSM	ENSMUSG00000020454.18	ENSMUST00000020734.11	3565	18	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	69.1571601699214	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATATGGCTGGTACTGT	3573	False	NA	7	True	ATTAAA	-23	NA	3152391	3194581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3152557_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
transcript_15136.nic	chr11	+	3513	18	NIC	ENSMUSG00000020454.18	novel	3614	19	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	104	junction_1	53.324624433129	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCTGGTACTGTGTTTA	3871	False	NA	12	True	ATTAAA	-28	NA	3152689	3194586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_3152798_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
transcript_15147.known	chr11	-	1546	9	FSM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_5	106.427719016241	1026	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTGAGGTTTGCTGTG	NA	False	NA	-1	True	TATAAA	-34	NA	3216393	3199906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
transcript_1515.known	chr1	+	1571	5	FSM	ENSMUSG00000043015.16	ENSMUST00000185790.7	1571	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	17.1537167984084	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATTGAAATTGAAAGTA	NA	False	NA	NA	False	ATTAAA	-24	NA	52669955	52689861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_52670011_52676523_52676640_52684419_52684646_52687908_52688086_52688864
transcript_15151.known	chr11	-	3898	32	FSM	ENSMUSG00000023764.19	ENSMUST00000066391.14	3898	32	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_15	27.928964448237	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTACTTTTCATACAAAAT	7979	False	NA	5	True	AATGAA	-22	NA	3143463	3081880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3094216_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3106865_3107865_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
transcript_15152.known	chr11	-	831	5	FSM	ENSMUSG00000023764.19	ENSMUST00000118627.2	831	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	37.5724300518346	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACACTCTGCACTTTGTT	8018	False	NA	NA	False	NA	NA	NA	3143424	3135567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3135975_3136064_3136137_3137239_3137411_3138940_3139057_3143359
transcript_15153.known	chr11	-	3969	33	FSM	ENSMUSG00000023764.19	ENSMUST00000081318.13	3969	33	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_15	28.2531628483874	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGGGTTGAAAAGTTAAG	8035	False	NA	36	True	NA	NA	NA	3143407	3081849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3093694_3093791_3094216_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3106865_3107865_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
transcript_15154.known	chr11	+	3712	18	FSM	ENSMUSG00000020454.18	ENSMUST00000110048.8	3712	18	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	69.9066109610197	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGTACTGTGTTTAT	4202	False	NA	13	True	ATTAAA	-29	NA	3153020	3194587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3153327_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
transcript_15157.known	chr11	+	2573	6	FSM	ENSMUSG00000034614.15	ENSMUST00000045153.11	2573	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.60434577328853	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGTGGTGATGAGG	NA	False	NA	NA	False	TATAAA	-25	NA	3280400	3292971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3281005_3281914_3282032_3282108_3282229_3283208_3283413_3283504_3283584_3291522
transcript_15161.known	chr11	+	2930	3	FSM	ENSMUSG00000020453.18	ENSMUST00000094471.10	2930	3	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_2	176	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGCTTTGTGTGTTTT	6006	False	NA	NA	False	GATAAA	-17	NA	3239992	3245429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3241885_3243279_3243344_3244455
transcript_15162.known	chr11	+	3173	5	FSM	ENSMUSG00000020453.18	ENSMUST00000093402.12	3173	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	189.564467925822	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6470	False	NA	14	True	ATTAAA	-16	NA	3240456	3259083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256287_3256361_3257647
transcript_15163.known	chr11	+	3118	4	FSM	ENSMUSG00000020453.18	ENSMUST00000057089.13	3118	4	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_3	67.6576348652209	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6452	False	NA	14	True	ATTAAA	-16	NA	3240438	3259083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3257647
transcript_15164.known	chr11	-	3514	16	FSM	ENSMUSG00000020451.18	ENSMUST00000101638.4	3514	16	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_14	50.0611182012104	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	NA	False	NA	-6	True	AATAAA	-19	NA	3359174	3294255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
transcript_15169.known	chr11	-	3693	15	FSM	ENSMUSG00000020451.18	ENSMUST00000101642.10	3693	15	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_14	38.572023804931	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	9814	False	NA	-6	True	AATAAA	-19	NA	3321376	3294255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
transcript_1517.nic	chr1	+	2665	4	NIC	ENSMUSG00000043015.16	novel	3247	8	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_2	18.263503375737	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGCTCCGAGTCAGTG	NA	False	NA	9	True	ATTAAA	-20	NA	52669852	52691078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_52670011_52676523_52676640_52687908_52688086_52688864
transcript_1518.known	chr1	-	4932	7	FSM	ENSMUSG00000041439.16	ENSMUST00000156876.8	4932	7	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_6	2.05480466765633	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTCTCTTGAGATCCTT	NA	False	NA	1	True	NA	NA	NA	52766621	52695444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_52697705_52699965_52700247_52701548_52701648_52702443_52702606_52715636_52715735_52747322_52748915_52766181
transcript_15195.known	chr11	-	2906	8	FSM	ENSMUSG00000020448.17	ENSMUST00000064364.3	2906	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	67.856390973278	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6815	False	NA	-5	True	ATTAAA	-14	NA	3402363	3365981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3388204_3388324_3402208
transcript_15197.known	chr11	-	2787	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6815	False	NA	-5	True	ATTAAA	-14	NA	3402363	3365981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
transcript_15198.known	chr11	-	643	6	FSM	ENSMUSG00000020448.17	ENSMUST00000144055.2	643	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	57.6485906159032	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGTTGGAACTCAAAAC	6844	False	NA	NA	False	NA	NA	NA	3402334	3367875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3402208
transcript_1520.known	chr1	-	2881	3	FSM	ENSMUSG00000041439.16	ENSMUST00000147421.2	2881	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAATGAAAAAAAAAAACCA	NA	False	NA	NA	False	AAAACA	-28	NA	52766517	52714781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_52715735_52747322_52748915_52766181
transcript_15201.known	chr11	-	3370	13	FSM	ENSMUSG00000034570.13	ENSMUST00000044507.12	3370	13	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_6	1.60511335702152	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTCCTGACTTGTTAGC	NA	False	NA	NA	False	ATTAAA	-21	NA	3454821	3444374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3445167_3445346_3445452_3445559_3445638_3445784_3445923_3449596_3449781_3449890_3450001_3450137_3450250_3450573_3450750_3451045_3451163_3451319_3451429_3451524_3451639_3451986_3453144_3454643
transcript_15202.known	chr11	+	707	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	6.04152298679729	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGAGTCTCTTCTTATTT	NA	False	NA	22	True	ACTAAA	-14	NA	3464866	3467351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
transcript_15204.known	chr11	+	972	4	FSM	ENSMUSG00000075702.11	ENSMUST00000131865.2	972	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	5.71547606649408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGCTTCAGAACACGA	NA	False	NA	NA	False	NA	NA	NA	3464701	3467130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3465074_3466260_3466297_3466485_3466921_3467001
transcript_15207.known	chr11	-	3386	22	FSM	ENSMUSG00000020439.18	ENSMUST00000170588.8	3386	22	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_21	27.3941583060523	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	8137	False	NA	-6	True	GATAAA	-17	NA	3489292	3467522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3487554_3487606_3489111
transcript_15208.nic	chr11	-	3454	22	NIC	ENSMUSG00000020439.18	novel	3386	22	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_20	24.580101828424	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	8126	False	NA	-6	True	GATAAA	-17	NA	3489303	3467522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3487635_3487744_3489111
transcript_1521.known	chr1	-	5767	6	FSM	ENSMUSG00000026102.10	ENSMUST00000027271.9	5767	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.49666295470958	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTATGGGTATAAAATA	NA	False	NA	NA	False	NA	NA	NA	52856847	52824585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_52829377_52830846_52831022_52833628_52833830_52836199_52836261_52838443_52838696_52856560
transcript_15211.known	chr11	-	3335	21	FSM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_20	9.90908673894825	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	8137	False	NA	-6	True	GATAAA	-17	NA	3489292	3467522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
transcript_15218.known	chr11	-	3117	20	FSM	ENSMUSG00000020439.18	ENSMUST00000075118.10	3117	20	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	23.2906482011302	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	8190	False	NA	-6	True	GATAAA	-17	NA	3489239	3467522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3467828_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
transcript_15219.nic	chr11	-	3068	20	ISM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	-30	3221	-30	-206	5prime_fragment	FALSE	canonical	3	70	junction_19	10.1643012249038	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGCCTCTCCCACCTGTC	8107	False	NA	NA	False	AAAAAG	-35	NA	3489322	3470743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
transcript_15225.known	chr11	+	5085	27	FSM	ENSMUSG00000034543.16	ENSMUST00000093389.9	5085	27	0	0	0	0	multi-exon	FALSE	canonical	2	110	junction_1	78.9355590669193	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGCCCTGCATTTTTA	NA	False	NA	24	True	CATAAA	-17	NA	3599493	3640370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3600147_3600307_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
transcript_15229.known	chr11	+	5656	26	FSM	ENSMUSG00000034543.16	ENSMUST00000096441.5	5656	26	0	0	0	0	multi-exon	FALSE	canonical	2	298	junction_20	51.0520361983731	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGCGTTCAGTACATTC	NA	False	NA	75	True	TATAAA	-16	NA	3599190	3640477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
transcript_15235.known	chr11	+	4632	2	FSM	ENSMUSG00000047205.13	ENSMUST00000055931.5	4632	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGTCTCATCCTCAAAT	5245	False	NA	NA	False	AATAAA	-17	NA	3845239	3851296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3845518_3846942
transcript_15236.known	chr11	+	2685	2	FSM	ENSMUSG00000047205.13	ENSMUST00000109996.8	2685	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAATTAGCACGTTA	5245	False	NA	NA	False	TTTAAA	-11	NA	3845239	3849353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3845518_3846946
transcript_15237.known	chr11	-	3059	2	FSM	ENSMUSG00000048807.3	ENSMUST00000051207.2	3059	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTCTGTCATTCCTTGG	NA	False	NA	NA	False	AATAAA	-16	NA	3864664	3857021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3857985_3862568
transcript_15239.nnic	chr11	-	1899	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	43.1225643434566	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882051	3867191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3881975
transcript_15240.nnic	chr11	-	1889	10	NNC	ENSMUSG00000020432.13	novel	1943	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_9	46.5015597773709	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882078	3867191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3882012
transcript_15241.known	chr11	-	1945	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109992.8	1945	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881789	3867191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881724
transcript_15242.known	chr11	-	1949	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109989.10	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	32.7813557369218	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882044	3867191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881975
transcript_15243.known	chr11	-	2027	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109993.9	2027	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	35.4989132158461	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882159	3867191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3882012
transcript_1525.known	chr1	+	1830	14	FSM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	8.39836557781919	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTTCTGTCTCCAGAA	NA	False	NA	NA	False	AAAAAG	-12	NA	52884204	52960145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
transcript_15250.known	chr11	+	2911	15	FSM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_12	97.3847042006336	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTGCTGCCCATTATTG	NA	False	NA	NA	False	NA	NA	NA	3913974	3930004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
transcript_15251.known	chr11	+	1879	4	FSM	ENSMUSG00000049721.15	ENSMUST00000063004.14	1879	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.18544972870135	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTATGTGTGTGTGTGTTT	8672	False	NA	NA	False	AGTAAA	-5	NA	3933712	3949315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3933841_3934940_3935159_3946908_3947052_3947925
transcript_15252.known	chr11	+	1749	3	FSM	ENSMUSG00000049721.15	ENSMUST00000078757.8	1749	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTTTTTTTGTTT	8595	False	NA	NA	False	AGTAAA	-16	NA	3933635	3949326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3933841_3946908_3947052_3947925
transcript_15255.known	chr11	+	2956	12	FSM	ENSMUSG00000019368.14	ENSMUST00000019512.8	2956	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	3.13603423830188	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAACAAGCTTT	NA	False	NA	NA	False	NA	NA	NA	3981782	3998024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_3981900_3985122_3985199_3989435_3989480_3989770_3989831_3989936_3990126_3991736_3991833_3992190_3992252_3993286_3993371_3993652_3993760_3993832_3993973_3994063_3994234_3996212
transcript_15259.known	chr11	-	1411	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCATTTCCTCTT	NA	False	NA	1	True	AATAAA	-17	NA	4045445	4041479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
transcript_15262.nnic	chr11	-	2680	12	NIC	ENSMUSG00000003585.14	novel	2631	12	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_11	9.93865481361196	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGAATTCATTGCCCAT	NA	False	NA	0	True	AATAAA	-22	NA	4073421	4047038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4066680_4066757_4073165
transcript_15265.nic	chr11	-	2621	11	NIC	ENSMUSG00000003585.14	novel	2631	12	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	5.85149553533112	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGAATTCATTGCCCAT	NA	False	NA	0	True	AATAAA	-22	NA	4073438	4047038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4073165
transcript_15267.known	chr11	-	2631	12	FSM	ENSMUSG00000003585.14	ENSMUST00000003681.8	2631	12	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_11	8.90816321700644	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGAATTCATTGCCCAT	NA	False	NA	0	True	AATAAA	-22	NA	4068831	4047038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4066680_4066757_4068624
transcript_15269.known	chr11	-	5015	12	FSM	ENSMUSG00000051427.15	ENSMUST00000093381.11	5015	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	2.2672661660618	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTTTGTGTTTTTGT	8493	False	NA	-4	True	ATTAAA	-16	NA	4110291	4091122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4093936_4094025_4094115_4094509_4094650_4096233_4096403_4096541_4096719_4097168_4097360_4097699_4097778_4098438_4099085_4099930_4100103_4101671_4101931_4102908_4103057_4110158
transcript_15272.known	chr11	+	1874	9	FSM	ENSMUSG00000003581.15	ENSMUST00000003677.11	1874	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	6.41165930161608	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCTGTTAAGACATAA	7850	False	NA	NA	False	AATAAA	-19	NA	4085201	4091172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4086798_4087211_4087369_4089738_4089859_4089934_4090079_4090297_4090401_4090486
transcript_15274.nic	chr11	+	2007	8	NIC	ENSMUSG00000003581.15	novel	1874	9	NA	NA	-57	0	intron_retention	FALSE	canonical	3	22	junction_1	6.01698276818648	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCTGTTAAGACATAA	7793	False	NA	NA	False	AATAAA	-19	NA	4085144	4091172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4086798_4087211_4087369_4089738_4090079_4090297_4090401_4090486
transcript_1529.known	chr1	-	3641	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTCAGTCCTCATTT	680	False	NA	-5	True	AATAAA	-14	NA	52992003	52961482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_52964894_52991773
transcript_153.known	SIRV5	+	2029	16	FSM	SIRV5A	SIRV505	2029	16	0	0	0	0	multi-exon	FALSE	canonical	3	5578	junction_10	1970.92572045614	1131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
transcript_1530.known	chr1	-	3565	2	FSM	ENSMUSG00000043629.13	ENSMUST00000114492.8	3565	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTCAGTCCTCATTT	174	False	NA	-5	True	AATAAA	-14	NA	52992509	52961482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_52964894_52992355
transcript_15300.known	chr11	+	4920	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	581	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCTCCATTATCCTCATC	NA	False	NA	46	True	TATAAA	-15	NA	4110349	4132541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
transcript_15321.known	chr11	+	1921	9	FSM	ENSMUSG00000034412.14	ENSMUST00000180088.2	1921	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGCTGTGTATAGTTAG	1582	False	NA	21	True	AATAAA	-12	NA	4136821	4165502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
transcript_15324.nic	chr11	+	2489	8	NIC	ENSMUSG00000034412.14	novel	1921	9	NA	NA	2	0	intron_retention	FALSE	canonical	3	291	junction_7	26.8639808924097	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGCTGTGTATAGTTAG	1551	False	NA	21	True	AATAAA	-12	NA	4136790	4165502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
transcript_15332.nnic	chr11	+	1669	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	-150	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	42.6686920815557	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCTGAGTGACAGCTGG	6968	False	NA	15	True	AATAAA	-23	NA	4168074	4172407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172019_4172071
transcript_15334.nnic	chr11	+	1592	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	-47	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	54.6479190978796	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCTGAGTGACAGCTGG	7071	False	NA	15	True	AATAAA	-23	NA	4168177	4172407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_4168453_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172019_4172071
transcript_15336.known	chr11	+	1574	9	FSM	ENSMUSG00000020424.4	ENSMUST00000020699.4	1574	9	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	11.4229757506527	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7118	False	NA	17	True	AATAAA	-25	NA	4168224	4172409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842
transcript_1535.known	chr1	-	646	9	FSM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.08209089362136	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226795	53197735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
transcript_15352.known	chr11	+	773	2	FSM	ENSMUSG00000058755.4	ENSMUST00000131764.2	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCTGAGCCCACACAGAC	8293	False	NA	NA	False	NA	NA	NA	4186419	4189664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4186914_4189385
transcript_15353.known	chr11	+	2272	3	FSM	ENSMUSG00000058755.4	ENSMUST00000075221.3	2272	3	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_2	1.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTCAGTCTTTTAT	8293	False	NA	5	True	TTTAAA	-18	NA	4186419	4191026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4186914_4188405_4188543_4189385
transcript_15354.known	chr11	+	4026	4	FSM	ENSMUSG00000034394.15	ENSMUST00000066283.12	4026	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	7.54247233265651	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTGGAGTGCATTGAT	NA	False	NA	NA	False	AATAAA	-18	NA	4207556	4222514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4207689_4216496_4216618_4218183_4218366_4218923
transcript_15355.known	chr11	+	3798	3	FSM	ENSMUSG00000034394.15	ENSMUST00000040750.4	3798	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTGGAGTGCATTGAT	NA	False	NA	NA	False	AATAAA	-18	NA	4217094	4222514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4217120_4218183_4218366_4218923
transcript_15366.known	chr11	-	1343	11	FSM	ENSMUSG00000020419.12	ENSMUST00000109949.8	1343	11	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	69.004347689113	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGGGATGGGATGACCT	NA	False	NA	NA	False	NA	NA	NA	4391082	4296382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
transcript_15379.nnic	chr11	-	2522	6	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-111	1878	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	73.5129920490249	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTGTGTGGTCATAAAAA	NA	False	NA	-2	True	AATAAA	-13	NA	4391216	4372189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_4374041_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
transcript_15384.known	chr11	-	583	5	FSM	ENSMUSG00000020419.12	ENSMUST00000130174.2	583	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_4	8.69985632065266	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391105	4374247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
transcript_15391.known	chr11	-	5674	18	FSM	ENSMUSG00000034354.18	ENSMUST00000109943.10	5674	18	0	0	0	0	multi-exon	TRUE	canonical	3	144	junction_2	25.6297837124855	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAACGAGTTCTAATTCTTT	NA	False	NA	-12	True	AATAAA	-27	NA	4544815	4430867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4432940_4435362_4435452_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221_4481306_4544602
transcript_15395.known	chr11	-	4040	18	FSM	ENSMUSG00000034354.18	ENSMUST00000130716.8	4040	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	55.1868797405845	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCCAGTTGTCTTAATTT	NA	False	NA	-9	True	AAAAAG	-6	NA	4544863	4432558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4432940_4435362_4435452_4437224_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221_4481306_4544602
transcript_15398.known	chr11	+	2650	20	FSM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_9	44.9846388062843	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGTGACATGCTCCAG	NA	False	NA	8	True	AATAAA	-20	NA	4587746	4633385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228_4614304_4618314_4618423_4618579_4618649_4618861_4618937_4620275_4620463_4622282_4622498_4623327_4623448_4629251_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
transcript_15418.known	chr11	-	510	3	FSM	ENSMUSG00000059534.9	ENSMUST00000151559.2	510	3	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	31	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCTTTTGCACGAGTC	NA	False	NA	-8	True	AATAAA	-17	NA	4654334	4651974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4652221_4653903_4653990_4654156
transcript_15419.known	chr11	-	434	2	FSM	ENSMUSG00000059534.9	ENSMUST00000058407.6	434	2	0	0	0	0	multi-exon	FALSE	canonical	3	8152	junction_1	0	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTTTTGCACGAGTCCT	NA	False	NA	-6	True	AATAAA	-19	NA	4654342	4651972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4652221_4654156
transcript_15420.known	chr11	-	389	2	FSM	ENSMUSG00000059534.9	ENSMUST00000130236.2	389	2	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGAGACCGGCTTTTGC	NA	False	NA	-15	True	AATAAA	-10	NA	4654053	4651981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4652221_4653903
transcript_15423.nnic	chr11	+	834	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	269.190192986297	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654604	4687669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_4654713_4672357_4672490_4678584_4678648_4680186_4680268_4682066_4682179_4687331
transcript_15426.nnic	chr11	+	720	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	-73	-136	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_1	154.183786436836	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCAGAGCTGCCTTCCC	NA	False	NA	13	True	AGTAAA	-18	NA	4654604	4687533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
transcript_15427.nnic	chr11	+	856	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_1	154.183786436836	157	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654604	4687669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
transcript_15430.known	chr11	+	792	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	205.698225563567	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
transcript_15442.known	chr11	-	2628	5	FSM	ENSMUSG00000009075.3	ENSMUST00000009219.3	2628	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	5.21416340365355	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGCCCTGGTTCTGTCT	7564	False	NA	3	True	NA	NA	NA	4696778	4686891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4688949_4689123_4689278_4689553_4689667_4690368_4690513_4696618
transcript_1545.nic	chr1	-	3221	13	NIC	ENSMUSG00000026098.14	novel	3054	13	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_12	39.2778563569857	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCACGTCCAACC	6039	False	NA	NA	False	AATAAA	-18	NA	53336190	53228345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53335890
transcript_15456.known	chr11	-	4720	16	FSM	ENSMUSG00000009073.17	ENSMUST00000109910.9	4720	16	0	0	0	0	multi-exon	TRUE	canonical	3	105	junction_1	67.5504749551524	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGTCGAGTTTTTTTTTT	8845	False	NA	-8	True	AATAAA	-21	NA	4799536	4715844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4718274_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_15457.known	chr11	-	2394	17	FSM	ENSMUSG00000009073.17	ENSMUST00000056290.13	2394	17	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	34.4219565648148	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGGGGGGGGAAAAAAAAA	9396	False	NA	-6	True	NA	NA	NA	4798985	4717664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_15459.known	chr11	-	2470	17	FSM	ENSMUSG00000009073.17	ENSMUST00000053079.13	2470	17	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	88.5606915835124	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTCCCATTTTTGT	9016	False	NA	NA	False	NA	NA	NA	4799365	4722333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4722639_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_1546.known	chr1	-	3054	13	FSM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	15.4495145554804	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCACGTCCAACC	6052	False	NA	NA	False	AATAAA	-18	NA	53336177	53228345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
transcript_15467.nic	chr11	-	4570	16	NIC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	65	-7	combination_of_known_junctions	FALSE	canonical	3	33	junction_14	87.5255899088312	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	8910	False	NA	-15	True	AATAAA	-14	NA	4799471	4715851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4770367_4770494_4798871
transcript_15469.nic	chr11	-	4558	16	NIC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	65	-7	combination_of_known_junctions	FALSE	canonical	3	63	junction_9	81.0748351147808	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	8910	False	NA	-15	True	AATAAA	-14	NA	4799471	4715851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_15476.nic	chr11	-	2541	15	ISM	ENSMUSG00000009073.17	ENSMUST00000053079.13	2470	17	-171	9603	0	0	5prime_fragment	FALSE	canonical	3	334	junction_11	18.239338512889	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGACTTATGCCCAAGG	8845	False	NA	NA	False	AATAAA	-21	NA	4799536	4731936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_15500.nic	chr11	-	2652	11	ISM	ENSMUSG00000009073.17	ENSMUST00000053079.13	2470	17	-105	17712	66	1155	5prime_fragment	FALSE	canonical	3	334	junction_7	18.1683791241817	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTAGGTTTTACATGG	8911	False	NA	NA	False	NA	NA	NA	4799470	4740045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_1551.known	chr1	-	2205	11	FSM	ENSMUSG00000026098.14	ENSMUST00000135246.8	2205	11	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_10	63.4885816505614	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATGAAAAGAAGAAGAGT	6053	False	NA	NA	False	NA	NA	NA	53336176	53236270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53329537_53329583_53336044
transcript_15512.known	chr11	+	1566	11	FSM	ENSMUSG00000034285.16	ENSMUST00000136552.8	1566	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	513.053808094239	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAATAAATAAAAAT	NA	False	NA	NA	False	AAAAAG	-16	NA	4823998	4843617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4824104_4832900_4833172_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
transcript_15513.known	chr11	+	1926	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	1002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTGTGGTGTTGTCTTCA	NA	False	NA	11	True	ATTAAA	-11	NA	4823950	4844200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
transcript_1552.nic	chr1	-	2196	10	ISM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	-35	7925	-35	0	5prime_fragment	FALSE	canonical	3	146	junction_9	13.2282899242868	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATGAAAAGAAGAAGAGT	6017	False	NA	NA	False	NA	NA	NA	53336212	53236270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
transcript_15535.known	chr11	+	2235	20	FSM	ENSMUSG00000034274.12	ENSMUST00000038237.8	2235	20	0	0	0	0	multi-exon	TRUE	canonical	3	228	junction_1	27.0805712775824	467	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTTTGTAGCTCCTT	NA	False	NA	21	True	ATTAAA	-18	NA	4845342	4878865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
transcript_15544.known	chr11	-	3994	4	FSM	ENSMUSG00000020396.9	ENSMUST00000093369.5	3994	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	3.09120616516523	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTTGTTTTTACTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	4898064	4888753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_4891416_4893850_4893976_4895110_4895311_4897057
transcript_15553.known	chr11	+	4085	21	FSM	ENSMUSG00000009090.18	ENSMUST00000009234.16	4085	21	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	27.5174490096738	644	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTCTGGCTATGGTCCC	NA	False	NA	NA	False	NA	NA	NA	4936823	4992791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
transcript_15588.known	chr11	-	2847	7	FSM	ENSMUSG00000034201.14	ENSMUST00000056649.13	2847	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	62.4357447478784	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTTGTTTTTATTAC	NA	False	NA	0	True	AAGAAA	-25	NA	5015327	5010371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5014836_5015095_5015214
transcript_1559.nic	chr1	-	2005	9	ISM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	-35	17375	-35	-9450	5prime_fragment	FALSE	canonical	3	146	junction_8	9.66953980290686	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTCTCCAGAGCGCATG	6017	False	NA	NA	False	NA	NA	NA	53336212	53245720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
transcript_15593.known	chr11	-	2530	6	FSM	ENSMUSG00000034201.14	ENSMUST00000109895.2	2530	6	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	36.2049720342386	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACAGTTTTTGCATTTGT	NA	False	NA	-9	True	AAGAAA	-16	NA	5015277	5010380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5015214
transcript_15595.nic	chr11	-	3217	6	NIC	ENSMUSG00000034201.14	novel	2530	6	NA	NA	-21	0	intron_retention	FALSE	canonical	3	54	junction_5	47.3894503027836	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACAGTTTTTGCATTTGT	NA	False	NA	-9	True	AAGAAA	-16	NA	5015348	5010380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5015095_5015214
transcript_15599.nic	chr11	-	3099	6	NIC	ENSMUSG00000034201.14	novel	2847	7	NA	NA	-21	-29	intron_retention	FALSE	canonical	3	54	junction_5	47.3894503027836	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGGACTGAGCC	NA	False	NA	-12	True	AGTAAA	-17	NA	5015348	5010498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_5011818_5012154_5012327_5012414_5012512_5012593_5012702_5013825_5015095_5015214
transcript_15600.known	chr11	-	3571	5	FSM	ENSMUSG00000034201.14	ENSMUST00000122886.8	3571	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	64.4607438678767	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGTTTGTTTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	5015294	5004131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5006690_5012154_5012327_5012593_5012702_5013825_5014479_5015214
transcript_15603.nic	chr11	-	2921	5	NIC	ENSMUSG00000034201.14	novel	2530	6	NA	NA	-4	0	intron_retention	FALSE	canonical	3	85	junction_4	39.0600499231632	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACAGTTTTTGCATTTGT	NA	False	NA	-9	True	AAGAAA	-16	NA	5015331	5010380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5015214
transcript_15606.nic	chr11	-	2834	5	NIC	ENSMUSG00000034201.14	novel	2730	5	NA	NA	-6	0	intron_retention	FALSE	canonical	3	85	junction_4	39.0600499231632	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGGATTCTAGAGTTAA	NA	False	NA	17	True	NA	NA	NA	5015333	5010469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_5012327_5012414_5012512_5012593_5012702_5013825_5014479_5015214
transcript_15611.known	chr11	+	1110	3	FSM	ENSMUSG00000034209.5	ENSMUST00000037218.2	1110	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAAGGGTTTCTTGTTC	NA	False	NA	NA	False	AATAAA	-27	NA	5008127	5010385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5008525_5009432_5009558_5009797
transcript_15617.known	chr11	-	2174	18	FSM	ENSMUSG00000009079.17	ENSMUST00000102930.10	2174	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	1623.90424701095	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGAGTTTTTTTTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	5049042	5019896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041459_5041478_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_15639.known	chr11	-	2588	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	0	0	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	6063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5049266	5019688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_1565.known	chr1	-	3054	5	FSM	ENSMUSG00000026098.14	ENSMUST00000142922.2	3054	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	65.1267993993256	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGATCAAGGGAAAATAAGA	6103	False	NA	NA	False	TTTAAA	-5	NA	53336126	53302053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_53304588_53306986_53307090_53314228_53314412_53321099_53321252_53336044
transcript_15686.known	chr11	-	2269	15	FSM	ENSMUSG00000009079.17	ENSMUST00000073308.11	2269	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	1383.04088950429	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTCATCCTCCTCC	NA	False	NA	-22	True	AATAAA	-14	NA	5049067	5019697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028580_5032283_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_1569.known	chr1	+	1868	8	FSM	ENSMUSG00000026096.15	ENSMUST00000027265.10	1868	8	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	14.7537611946159	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGCCTTGTGTGTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	53352782	53365502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
transcript_15718.known	chr11	+	1790	9	FSM	ENSMUSG00000034175.14	ENSMUST00000036320.12	1790	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	83.1500901983876	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049438	5056091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055314_5055432_5055718_5055799
transcript_1572.known	chr1	+	1592	7	FSM	ENSMUSG00000026096.15	ENSMUST00000151296.8	1592	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	65.9858991670864	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCGTGTTTCAAGTGTTT	NA	False	NA	18	True	AATAAA	-38	NA	53352812	53365333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_53353018_53354014_53354259_53357065_53357449_53359101_53359456_53360238_53360370_53362325_53362430_53365162
transcript_15720.known	chr11	+	2333	9	FSM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	51.4605431374369	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	9767	False	NA	16	True	AATAAA	-17	NA	5048925	5056091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
transcript_15735.known	chr11	+	1611	8	FSM	ENSMUSG00000034175.14	ENSMUST00000109878.9	1611	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	73.7707424998528	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5050156	5056091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5050227_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
transcript_15754.known	chr11	+	714	5	FSM	ENSMUSG00000034175.14	ENSMUST00000134267.8	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	85.5073096290604	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGACTGGCTCCATGGA	NA	False	NA	NA	False	NA	NA	NA	5049432	5053349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5049567_5049747_5049899_5050384_5050588_5051868_5051906_5053160
transcript_15760.known	chr11	-	1290	9	FSM	ENSMUSG00000009079.17	ENSMUST00000093365.12	1290	9	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_1	1813.8341296822	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAGAGAGCATTTTATG	NA	False	NA	-5	True	ATTAAA	-21	NA	5049066	5030417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5030689_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_15765.known	chr11	-	1947	15	FSM	ENSMUSG00000034164.18	ENSMUST00000062821.13	1947	15	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_2	4.11815294439988	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGCTTGGTCTCTATGTG	7862	False	NA	NA	False	AATAAA	-19	NA	5102257	5056264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5056970_5060689_5060775_5066879_5066925_5078869_5078915_5079008_5079072_5079427_5079481_5079621_5079721_5080631_5080779_5081481_5081572_5081919_5082041_5084348_5084411_5085353_5085432_5093826_5093931_5094294_5094409_5102121
transcript_15770.known	chr11	-	4856	9	FSM	ENSMUSG00000020393.17	ENSMUST00000020662.15	4856	9	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	7.36121593216773	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGTGAGGCCAGGCTGT	NA	False	NA	-4	True	AATAAA	-21	NA	5211558	5141551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5145122_5148309_5148395_5149501_5149712_5151696_5152030_5159938_5160093_5165406_5165532_5188410_5188503_5193774_5193938_5211434
transcript_15771.nnic	chr11	-	1343	6	NNC	ENSMUSG00000020393.17	novel	4856	9	NA	NA	-121	-3640	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	23.2430634813916	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGATTTTTGGTCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	5211679	5158472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_5159037_5159938_5160093_5165406_5165532_5188410_5188503_5193774_5193938_5211434
transcript_15776.known	chr11	+	2129	5	FSM	ENSMUSG00000020484.20	ENSMUST00000063084.16	2129	5	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_4	35.2801289680182	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTTCTGTGATTTCTA	NA	False	NA	34	True	ATTAAA	-17	NA	5470658	5475893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5471201_5471922_5472020_5473332_5473468_5474238_5474385_5474684
transcript_1578.known	chr1	-	2442	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTTAATTTTTACCT	NA	False	NA	-2	True	AATAAA	-41	NA	53391911	53383775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
transcript_15781.nic	chr11	+	2652	4	NIC	ENSMUSG00000020484.20	novel	2129	5	NA	NA	-88	0	intron_retention	FALSE	canonical	3	876	junction_3	39.9110121255887	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTTCTGTGATTTCTA	NA	False	NA	34	True	ATTAAA	-17	NA	5470906	5475893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_5471201_5471922_5472020_5473332_5474385_5474684
transcript_15782.known	chr11	+	987	3	FSM	ENSMUSG00000020484.20	ENSMUST00000145588.2	987	3	0	0	0	0	multi-exon	FALSE	canonical	3	908	junction_2	32	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGGTGGACAGCAAGCC	NA	False	NA	NA	False	NA	NA	NA	5471004	5474026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5471201_5471922_5472020_5473332
transcript_15785.known	chr11	-	3372	5	FSM	ENSMUSG00000020482.5	ENSMUST00000020776.5	3372	5	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_1	36.1939221417077	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCTGTAATCCTGTATAA	NA	False	NA	-2	True	AATAAA	-24	NA	5492187	5478886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5481534_5484242_5484381_5484764_5484990_5491372_5491424_5491876
transcript_15796.known	chr11	-	5089	6	FSM	ENSMUSG00000049680.18	ENSMUST00000093362.12	5089	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_5	4.96386945839634	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACATGCAGAAAGTTTGT	8847	False	NA	NA	False	AATAAA	-26	NA	5691150	5663416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676419_5676830_5676858_5691096
transcript_15798.known	chr11	-	3972	6	FSM	ENSMUSG00000049680.18	ENSMUST00000120306.8	3972	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	21.2414688757628	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTCAAATGACAGTAGTG	NA	False	NA	10	True	NA	NA	NA	5712371	5664970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676419_5676830_5676858_5711880
transcript_1580.known	chr1	-	983	6	FSM	ENSMUSG00000026095.16	ENSMUST00000123519.9	983	6	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_2	221.433872747599	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGGGTGTAGTAGTT	NA	False	NA	-30	True	AATAAA	-13	NA	53391911	53383803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_53384139_53385738_53385921_53387604_53387718_53389145_53389222_53390038_53390093_53391688
transcript_15812.known	chr11	-	995	4	FSM	ENSMUSG00000020477.11	ENSMUST00000154330.2	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	1753	junction_3	448.803099612984	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCAACAGTGGAAGTAC	NA	False	NA	NA	False	ATTAAA	-11	NA	5657687	5653982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5654733_5657297_5657410_5657486_5657556_5657623
transcript_15819.known	chr11	+	1846	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	16.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGTTGTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	5712128	5731876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5712241_5715508_5715572_5730205
transcript_15825.known	chr11	-	503	3	FSM	ENSMUSG00000020477.11	ENSMUST00000132874.2	503	3	0	0	0	0	multi-exon	FALSE	canonical	3	1753	junction_2	547.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTCGTGGGCTACAGTG	NA	False	NA	NA	False	NA	NA	NA	5657690	5654554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5654733_5657297_5657556_5657623
transcript_15832.known	chr11	-	700	3	FSM	ENSMUSG00000020477.11	ENSMUST00000020770.11	700	3	0	0	0	0	multi-exon	FALSE	canonical	3	2385	junction_2	231.5	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657667	5654325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5654733_5657297_5657410_5657486
transcript_15833.known	chr11	+	2295	13	FSM	ENSMUSG00000020476.15	ENSMUST00000102928.5	2295	13	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	84.6740072277201	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATAACTGATGTCAG	NA	False	NA	-2	True	NA	NA	NA	5738529	5750962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747283_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
transcript_15834.known	chr11	-	840	3	FSM	ENSMUSG00000020475.4	ENSMUST00000020768.4	840	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	6	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCACGTTTCATATAGCT	8648	False	NA	NA	False	AATAAA	-15	NA	5753733	5751639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5751840_5752998_5753180_5753274
transcript_15839.nic	chr11	-	2895	11	NIC	ENSMUSG00000020474.12	novel	2924	11	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	12.1227059685534	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGTTTTACAAGTTTT	410	False	NA	NA	False	AATAAA	-18	NA	5787986	5777860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659_5781781_5784741_5784814_5785415_5785516_5785628_5785800_5786193_5786375_5787560
transcript_15841.known	chr11	-	2924	11	FSM	ENSMUSG00000020474.12	ENSMUST00000020767.4	2924	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	4.04969134626332	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGTTTTACAAGTTTT	380	False	NA	NA	False	AATAAA	-18	NA	5788016	5777860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659_5781781_5784741_5784814_5785415_5785587_5785700_5785800_5786193_5786375_5787560
transcript_15853.known	chr11	+	3831	21	FSM	ENSMUSG00000020473.14	ENSMUST00000102923.10	3831	21	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_16	4.12886182863995	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCCCTGTTCTGACTGG	8672	False	NA	8	True	AATAAA	-18	NA	5811946	5822088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5812399_5813938_5814278_5814823_5814896_5815016_5815089_5815199_5815311_5815384_5815454_5816432_5816511_5816919_5817001_5817097_5817152_5817639_5817750_5817819_5817960_5818296_5818382_5818474_5818620_5818730_5818817_5819064_5819189_5819413_5819611_5819706_5819887_5820075_5820428_5820513_5820654_5820752_5820853_5821244
transcript_15856.nnic	chr11	-	1539	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_4	880.90807692971	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	9541	False	NA	-6	True	AATAAA	-17	NA	5828256	5822187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823504_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
transcript_15858.known	chr11	-	1646	11	FSM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	0	0	0	0	multi-exon	FALSE	canonical	3	869	junction_10	541.870242770352	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTCACTTGGGCATGT	9505	False	NA	2	True	AATAAA	-25	NA	5828292	5822179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
transcript_1586.known	chr1	+	1910	4	FSM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	12.7104506432917	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTTCCTCTGTTTAA	NA	False	NA	93	True	TATAAA	-8	NA	53336253	53349468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_53336348_53338130_53338312_53344613_53344766_53347985
transcript_15861.known	chr11	-	590	7	FSM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_6	30.6671195618731	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848782	5846636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425_5848540_5848760
transcript_15862.nic	chr11	-	745	6	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	66	0	66	0	3prime_fragment	FALSE	canonical	3	38	junction_4	23.9115035077261	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848716	5846636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425
transcript_15863.nic	chr11	-	490	4	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	734	0	734	0	3prime_fragment	FALSE	canonical	3	77	junction_3	8.80656320908194	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848048	5846636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831
transcript_15864.known	chr11	-	2727	10	FSM	ENSMUSG00000041798.16	ENSMUST00000102920.4	2727	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGGCCTGCTGATTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	5900081	5850822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5851815_5852084_5852319_5853099_5853256_5854360_5854545_5856476_5856577_5856682_5856779_5859082_5859203_5860277_5860433_5860861_5861025_5899554
transcript_15866.known	chr11	+	2541	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTCTTGTGTTTACTTT	NA	False	NA	19	True	GATAAA	-20	NA	5905692	5917780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
transcript_15873.known	chr11	-	1973	21	FSM	ENSMUSG00000057897.15	ENSMUST00000093355.12	1973	21	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	41.4625131896271	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGATGACAACGACAACCA	3040	False	NA	-144	True	TTTAAA	-6	NA	6015582	5921668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5927811_5927941_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
transcript_15878.known	chr11	-	4004	20	FSM	ENSMUSG00000057897.15	ENSMUST00000090443.10	4004	20	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	42.1055921039782	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	2874	False	NA	NA	False	NA	NA	NA	6015748	5919671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5929672_5929722_5932500_5932573_5932720_5932759_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
transcript_1588.known	chr1	-	300	4	FSM	ENSMUSG00000117809.2	ENSMUST00000236737.2	300	4	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_1	43.3999487966928	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCACATAACCATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	53391778	53387637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_53387718_53389145_53389222_53390038_53390093_53391688
transcript_15887.known	chr11	-	1872	19	FSM	ENSMUSG00000057897.15	ENSMUST00000002817.12	1872	19	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	16.5324223165972	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGATGATGACAACGACAA	2880	False	NA	-147	True	TTTAAA	-3	NA	6015742	5921671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
transcript_15897.known	chr11	-	3927	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTGTTTATCTGGCTTA	9458	False	NA	NA	False	NA	NA	NA	6150415	6055690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
transcript_15903.nic	chr11	-	578	2	ISM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	-25	87706	-25	-70472	5prime_fragment	FALSE	canonical	3	343	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGAAGAGGCCAAGGCCT	9433	False	NA	NA	False	AAGAAA	-27	NA	6150440	6143396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_6143477_6149942
transcript_15904.known	chr11	-	393	1	FSM	ENSMUSG00000083022.2	ENSMUST00000117476.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	275	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	NA	False	NA	-51	True	AAAACA	-35	NA	6123036	6122643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6122600_6123000
transcript_15908.known	chr11	-	1956	14	FSM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	0	0	0	0	multi-exon	FALSE	canonical	3	937	junction_7	74.9654752883426	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4489	False	NA	-2	True	NA	NA	NA	6217772	6208918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
transcript_1592.nic	chr1	-	335	3	ISM	ENSMUSG00000117809.2	ENSMUST00000236737.2	300	4	-115	1508	-115	-1508	5prime_fragment	FALSE	canonical	3	545	junction_1	45	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGGTGGTCGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	53391893	53389145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_53389222_53390038_53390093_53391688
transcript_1593.known	chr1	+	4005	2	FSM	ENSMUSG00000026096.15	ENSMUST00000153939.2	4005	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAACAAAAAACCCT	NA	False	NA	NA	False	NA	NA	NA	53352815	53357817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_53353018_53354014
transcript_15942.known	chr11	-	764	6	FSM	ENSMUSG00000004393.11	ENSMUST00000151446.2	764	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	391.314400450584	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTCGGGGCAAAGCCTT	4489	False	NA	NA	False	NA	NA	NA	6217772	6215636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6215757_6216315_6216407_6216511_6216683_6216810_6216918_6217417_6217580_6217659
transcript_15944.known	chr11	-	2003	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	5338	False	NA	NA	False	ATTAAA	-24	NA	6224870	6220368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
transcript_15948.known	chr11	+	4075	24	FSM	ENSMUSG00000020456.18	ENSMUST00000093350.10	4075	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	222.742486968574	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTTTGCATTGCATCGG	NA	False	NA	-36	True	AAAAAG	-19	NA	6241667	6306592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266764_6266856_6274877_6274923_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
transcript_15952.nic	chr11	+	4134	23	NIC	ENSMUSG00000020456.18	novel	4075	24	NA	NA	-69	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_4	180.942853176638	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTTTGCATTGCATCGG	NA	False	NA	-36	True	AAAAAG	-19	NA	6241563	6306592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_6241694_6246951_6247200_6263787_6263980_6266764_6266856_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
transcript_15954.known	chr11	+	4127	23	FSM	ENSMUSG00000020456.18	ENSMUST00000003461.15	4127	23	0	0	0	0	multi-exon	FALSE	canonical	3	535	junction_8	60.360778272973	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	14	True	CATAAA	-18	NA	6241632	6306642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
transcript_15957.known	chr11	+	4106	23	FSM	ENSMUSG00000020456.18	ENSMUST00000101554.9	4106	23	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	146.072267860866	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAAGAACAACCACCT	NA	False	NA	-50	True	AAAAAG	-5	NA	6241665	6306578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6241770_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
transcript_15959.nic	chr11	+	4362	23	NIC	ENSMUSG00000020456.18	novel	702	3	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	139.064294839378	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTTTGCATTGCATCGG	NA	False	NA	-36	True	AAAAAG	-19	NA	6241945	6306592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_6242292_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
transcript_1597.known	chr1	-	3293	8	FSM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_1	6.25316246521123	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCTTAAGTTACTCTTG	686	False	NA	NA	False	AATAAA	-26	NA	53824383	53794664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53815675_53815839_53824232
transcript_15992.known	chr11	+	779	2	FSM	ENSMUSG00000020456.18	ENSMUST00000125929.2	779	2	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTTGTGTTTCTATTTTT	NA	False	NA	NA	False	TATAAA	-12	NA	6241640	6247677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6241694_6246951
transcript_15996.known	chr11	+	4116	20	FSM	ENSMUSG00000041164.16	ENSMUST00000109787.8	4116	20	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_1	72.0482679083075	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGCTCAGGATATCCCT	4623	False	NA	15	True	AATAAA	-18	NA	6339073	6356158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6339141_6345124_6345289_6345567_6345679_6345757_6345873_6346231_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
transcript_16.known	ERCC-00046	+	506	1	FSM	ERCC-00046A	DQ516748	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1626	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00046_+_0_500
transcript_1601.nnic	chr1	-	4285	19	NNC	ENSMUSG00000041303.8	novel	4582	18	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	45.5715419104814	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACCTTTTAAACTTT	6650	False	NA	-6	True	AATAAA	-19	NA	54478180	54435162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_54435792_54436138_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
transcript_16010.known	chr11	+	746	5	FSM	ENSMUSG00000071866.13	ENSMUST00000090749.13	746	5	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	16065.018555467	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTGTTTGTATTGG	NA	False	NA	0	True	AATAAA	-17	NA	6365869	6369815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6365985_6368100_6368132_6368225_6368315_6369112_6369286_6369477
transcript_16013.known	chr11	+	677	4	FSM	ENSMUSG00000071866.13	ENSMUST00000137829.8	677	4	0	0	0	0	multi-exon	FALSE	canonical	3	36680	junction_3	786.740674484858	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAGCGTCCCTACCCCAT	NA	False	NA	NA	False	NA	NA	NA	6365875	6369663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6365980_6368100_6368315_6369112_6369286_6369477
transcript_16015.known	chr11	+	2853	4	FSM	ENSMUSG00000071866.13	ENSMUST00000155824.2	2853	4	0	0	0	0	multi-exon	FALSE	canonical	3	36680	junction_3	513.872444181325	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTGTCCTTGTTTGTAT	NA	False	NA	-3	True	AATAAA	-14	NA	6365875	6369812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6368132_6368225_6368315_6369112_6369286_6369477
transcript_16019.known	chr11	-	1633	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	0	0	0	0	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	1299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTCCTGGTCCTGA	NA	False	NA	-5	True	AATAAA	-24	NA	6394443	6377228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
transcript_1602.known	chr1	-	4582	18	FSM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_11	22.8358062796764	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACCTTTTAAACTTT	6700	False	NA	-6	True	AATAAA	-19	NA	54478130	54435162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
transcript_16021.known	chr11	-	519	4	FSM	ENSMUSG00000041126.17	ENSMUST00000093346.6	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	1363.86957669061	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	-3	True	GATAAA	-16	NA	6394352	6378137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6378433_6379095_6379226_6389375_6389454_6394336
transcript_16023.nic	chr11	-	3325	22	NIC	ENSMUSG00000020437.13	novel	3307	22	NA	NA	-39	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_15	5.07539527408542	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGCCACTGCTTTG	6504	False	NA	0	True	AATAAA	-20	NA	6469543	6456547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_6456833_6456906_6457062_6457868_6457983_6458189_6458295_6459324_6459470_6460147_6460372_6460867_6461076_6461482_6461650_6462160_6462294_6462462_6462538_6464466_6464538_6464751_6464923_6465093_6465209_6465848_6465995_6466078_6466304_6466747_6466865_6467086_6467198_6467569_6467624_6467851_6468018_6468733_6468828_6468978_6469188_6469308
transcript_16024.known	chr11	-	3307	22	FSM	ENSMUSG00000020437.13	ENSMUST00000003459.4	3307	22	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	5.11677690501468	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGCCACTGCTTTG	5089	False	NA	0	True	AATAAA	-20	NA	6470958	6456547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6456833_6456906_6457062_6457868_6457983_6458189_6458295_6459324_6459470_6460147_6460372_6460867_6461076_6461482_6461650_6462160_6462294_6462462_6462538_6464466_6464538_6464751_6464923_6465093_6465209_6465848_6465995_6466078_6466304_6466747_6466865_6467086_6467198_6467569_6467624_6467851_6468018_6468733_6468828_6468978_6469188_6470741
transcript_16026.known	chr11	-	611	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_3	5.24933858267454	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478779	6475590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
transcript_16032.nic	chr11	-	2533	3	NIC	ENSMUSG00000085156.9	novel	611	4	NA	NA	-54	0	intron_retention	FALSE	canonical	3	436	junction_2	5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478833	6475590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_6475818_6476354_6478375_6478547
transcript_16033.known	chr11	-	1540	2	FSM	ENSMUSG00000085156.9	ENSMUST00000134527.3	1540	2	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCACTGTCTCCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	6478763	6477050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6478375_6478547
transcript_16035.known	chr11	-	771	3	FSM	ENSMUSG00000085156.9	ENSMUST00000124818.3	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	1	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478766	6475590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6475818_6476354_6476438_6478305
transcript_16038.nnic	chr11	+	2061	11	NNC	ENSMUSG00000000378.16	novel	1858	10	NA	NA	-36	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_2	167.894639580899	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	15	True	AAAACA	-27	NA	6496850	6546744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_6497030_6519963_6520138_6526478_6526646_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
transcript_16040.known	chr11	+	1858	10	FSM	ENSMUSG00000000378.16	ENSMUST00000000388.15	1858	10	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_9	41.5204843093617	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	15	True	AAAACA	-27	NA	6496886	6546744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6497030_6519963_6520138_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
transcript_16046.nic	chr11	+	1687	9	NIC	ENSMUSG00000000378.16	novel	1858	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	133.856266196245	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	15	True	AAAACA	-27	NA	6496883	6546744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_6497030_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
transcript_16054.known	chr11	-	2347	13	FSM	ENSMUSG00000000384.16	ENSMUST00000189268.7	2347	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGCCACTGGCTTTTC	NA	False	NA	-6	True	AATAAA	-18	NA	6576067	6565598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
transcript_16077.known	chr11	-	2290	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576043	6566422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
transcript_1608.nic	chr1	-	498	3	ISM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	-50	38058	-50	-6758	5prime_fragment	FALSE	canonical	3	158	junction_2	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGAAAGTAAGCTGTTAA	6650	False	NA	NA	False	AAGAAA	-2	NA	54478180	54473220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_54473398_54476990_54477103_54477971
transcript_16085.nic	chr11	-	2677	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	173	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_11	140.71599672936	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6575849	6566422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575383
transcript_16088.nic	chr11	-	2262	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	154.867151813236	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576073	6566422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6576022
transcript_16090.nic	chr11	-	2425	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_8	147.44311131545	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576100	6566422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575148_6575214_6575964
transcript_1610.known	chr1	-	10583	27	FSM	ENSMUSG00000073678.5	ENSMUST00000097739.5	10583	27	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_18	5.36548800562088	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTTTACTGGTTTTCAT	NA	False	NA	3	True	AATAAA	-29	NA	54596841	54512152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_54520004_54521010_54521116_54525628_54525817_54529379_54529431_54531187_54531324_54532367_54532566_54533959_54534051_54536692_54536787_54549186_54549226_54550552_54550662_54551059_54551127_54551755_54551808_54551930_54552005_54553995_54554072_54560450_54560529_54563474_54563527_54564526_54564574_54567670_54567755_54569275_54569332_54570012_54570119_54571180_54571248_54572577_54572631_54575113_54575272_54582196_54582369_54587097_54587274_54590135_54590290_54596592
transcript_16120.known	chr11	-	853	4	FSM	ENSMUSG00000000384.16	ENSMUST00000131815.8	853	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	235.927013195936	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGAGATAAGGCCTATTT	NA	False	NA	-12	True	AATAAA	-6	NA	6576022	6573199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_6573462_6573815_6574284_6575148_6575214_6575964
transcript_16124.known	chr11	+	1233	3	FSM	ENSMUSG00000041046.8	ENSMUST00000045374.8	1233	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	3.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGTATTTCTCATTTTAT	NA	False	NA	14	True	ATTAAA	-14	NA	6608520	6627475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_6608628_6624762_6624896_6626482
transcript_16125.nnic	chr11	-	2301	6	NNC	ENSMUSG00000020427.12	novel	2421	5	NA	NA	-87	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	76.8203098145276	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTTTGTCTGTTTCTGG	NA	False	NA	NA	False	AATAAA	-23	NA	7164010	7156085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_7157507_7158368_7158509_7159458_7159579_7160018_7160246_7163384_7163615_7163847
transcript_16126.known	chr11	-	2421	5	FSM	ENSMUSG00000020427.12	ENSMUST00000020702.11	2421	5	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_4	11.7340317027013	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTTTGTCTGTTTCTGG	NA	False	NA	NA	False	AATAAA	-23	NA	7163897	7156085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_7157507_7158368_7158509_7159458_7159579_7160018_7160246_7163384
transcript_16128.known	chr11	-	7629	31	FSM	ENSMUSG00000020422.15	ENSMUST00000239111.2	7629	31	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_30	11.9341247409826	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCATTTTTTTAAGTCT	10003	False	NA	NA	False	AATAAA	-24	NA	8614681	8381651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8565739_8565852_8614478
transcript_16133.known	chr11	-	4640	8	FSM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	37.6557988054094	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATTCATTTATTAAT	NA	False	NA	92	True	AATAAA	-21	NA	8961191	8943136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
transcript_16135.known	chr11	-	2792	7	FSM	ENSMUSG00000020413.12	ENSMUST00000152890.8	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	37.7079419869195	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAATAAATCAAAATC	NA	False	NA	NA	False	ATTAAA	-44	NA	8961128	8945355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496
transcript_16138.known	chr11	-	2114	7	FSM	ENSMUSG00000020413.12	ENSMUST00000139877.8	2114	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	35.6436841841892	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAAACCACAAGGAGAC	NA	False	NA	NA	False	NA	NA	NA	8961164	8947339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
transcript_16144.known	chr11	+	1157	9	FSM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	904.856126339983	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	26	True	AATAAA	-20	NA	9068106	9086170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_16145.known	chr11	+	1277	9	FSM	ENSMUSG00000020407.14	ENSMUST00000020677.8	1277	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	932.389931506663	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068102	9086164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_9068285_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_16148.known	chr11	+	1252	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	3423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTGACTCTGCGGT	NA	False	NA	23	True	AATAAA	-17	NA	9068506	9086167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_16165.known	chr11	+	334	2	FSM	ENSMUSG00000020407.14	ENSMUST00000168121.2	334	2	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTCCATTCGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	9068626	9069673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_9068661_9069373
transcript_16167.nnic	chr11	-	3029	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	-14	-88	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	293.968630223627	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	-9	True	AATAAA	-20	NA	11758976	11750375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_11753064_11756095_11756216_11758021_11758161_11758894
transcript_16169.known	chr11	-	2974	3	FSM	ENSMUSG00000035455.13	ENSMUST00000171938.2	2974	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	284.5	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758962	11750287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_11753064_11756095_11756216_11758884
transcript_16170.known	chr11	-	2807	3	FSM	ENSMUSG00000035455.13	ENSMUST00000109664.2	2807	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	194	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGCAAGATGTAATCTT	NA	False	NA	NA	False	AATAAA	-11	NA	11758932	11750551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_11753064_11755958_11756216_11758894
transcript_16171.known	chr11	-	421	2	FSM	ENSMUSG00000035455.13	ENSMUST00000150714.2	421	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTGTACAGGAGATGAT	NA	False	NA	NA	False	AATAGA	-17	NA	11758948	11752696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_11753064_11758894
transcript_16174.nnic	chr11	-	2149	15	NNC	ENSMUSG00000020182.17	novel	1954	15	NA	NA	-1888	0	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_14	27.1151174040743	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	3750	False	NA	-3	True	AATAAA	-19	NA	11832517	11764102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11832251
transcript_16175.known	chr11	-	1954	15	FSM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	28.5478474116129	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	False	NA	-3	True	AATAAA	-19	NA	11840408	11764102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11840337
transcript_1618.known	chr1	-	6195	25	FSM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	0	0	0	0	multi-exon	TRUE	canonical	2	1032	junction_2	157.733865172392	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATAGTATACCAGTTCTT	NA	False	NA	-9	True	AATAAA	-17	NA	55066640	55024327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
transcript_16180.nnic	chr11	-	1015	5	NNC	ENSMUSG00000020182.17	novel	964	5	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	42.6438741204408	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	False	NA	-3	True	AATAAA	-19	NA	11772959	11764102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772778
transcript_16181.known	chr11	-	964	5	FSM	ENSMUSG00000020182.17	ENSMUST00000136810.8	964	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.0271658914602	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	False	NA	-3	True	AATAAA	-19	NA	11772921	11764102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772791
transcript_16186.known	chr11	-	5061	17	FSM	ENSMUSG00000020176.18	ENSMUST00000093321.12	5061	17	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_14	7.38135319572231	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTCCTGTCGTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	11987401	11880507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_11883610_11884198_11884293_11886717_11886806_11887000_11887068_11887806_11887924_11888409_11888485_11893881_11893981_11894815_11894927_11895494_11895633_11895963_11896033_11896686_11896803_11901502_11901660_11904743_11904909_11917531_11917686_11920422_11920643_11937595_11937675_11987191
transcript_16196.known	chr11	-	5615	15	FSM	ENSMUSG00000020173.18	ENSMUST00000046755.14	5615	15	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_7	88.5788303358848	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTGTGGACTTCATGC	NA	False	NA	-1	True	AATAAA	-20	NA	12414957	12186675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
transcript_16204.known	chr11	-	5541	14	FSM	ENSMUSG00000020173.18	ENSMUST00000109651.9	5541	14	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_9	120.525034842014	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTCGTGTGGACTTCAT	NA	False	NA	-3	True	AATAAA	-18	NA	12414960	12186677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
transcript_16206.nic	chr11	-	5530	14	NIC	ENSMUSG00000020173.18	novel	5615	15	NA	NA	-85	0	combination_of_known_junctions	FALSE	canonical	3	235	junction_6	74.428711772371	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTCGTGTGGACTTCAT	NA	False	NA	-3	True	AATAAA	-18	NA	12415045	12186677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
transcript_16209.nic	chr11	-	5261	14	NIC	ENSMUSG00000020173.18	novel	5615	15	NA	NA	1	-183	combination_of_known_junctions	FALSE	canonical	3	235	junction_6	74.428711772371	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATCCTTTTACTATTTC	NA	False	NA	NA	False	TATAAA	-25	NA	12414959	12186860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
transcript_16211.nic	chr11	-	4424	14	NIC	ENSMUSG00000020173.18	novel	5615	15	NA	NA	-85	-673	combination_of_known_junctions	FALSE	canonical	3	235	junction_6	74.428711772371	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAATACACAGGCTGGAG	NA	False	NA	NA	False	AATAAA	-22	NA	12415045	12187783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
transcript_16212.known	chr11	-	5271	13	FSM	ENSMUSG00000020173.18	ENSMUST00000109650.8	5271	13	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_8	114.138895649117	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTGTGGACTTCATGC	NA	False	NA	-1	True	AATAAA	-20	NA	12414859	12186675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
transcript_16235.nic	chr11	-	1063	5	ISM	ENSMUSG00000020173.18	ENSMUST00000130572.2	3463	9	-293	64770	-85	-25790	5prime_fragment	FALSE	canonical	3	409	junction_1	38.5770333229501	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGATTTTTCAAAG	NA	False	NA	NA	False	AAGAAA	-3	NA	12415045	12319636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
transcript_16237.nic	chr11	-	661	3	ISM	ENSMUSG00000020173.18	ENSMUST00000130572.2	3463	9	-220	73327	-12	-34347	5prime_fragment	FALSE	canonical	3	444	junction_2	36	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCCCTGAAGAAAGAGTTAA	NA	False	NA	NA	False	AAGAAA	-3	NA	12414972	12328193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_12328360_12336562_12336767_12414681
transcript_16238.known	chr11	+	379	1	FSM	ENSMUSG00000081631.2	ENSMUST00000121451.2	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACATTGGTCTGCAATGT	NA	False	NA	NA	False	NA	NA	NA	14112078	14112457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_14112100_14112500
transcript_16240.known	chr11	+	3264	5	FSM	ENSMUSG00000048834.17	ENSMUST00000109645.9	3264	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.69258240356725	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTGACCAAAGTCCACC	NA	False	NA	NA	False	AATAAA	-14	NA	16207723	16234186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_16208087_16209854_16210022_16211437_16211489_16212913_16213251_16231840
transcript_16242.known	chr11	-	450	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109641.2	450	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	2930.40759394775	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAACAGACATTTAT	NA	False	NA	-51	True	AATAAA	-6	NA	16458069	16451650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16457979
transcript_16243.known	chr11	-	779	4	FSM	ENSMUSG00000078974.11	ENSMUST00000178855.8	779	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	2890.84082347449	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTATCAAATTTTAGTAA	NA	False	NA	-38	True	AATAAA	-19	NA	16458484	16451637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458078
transcript_16244.known	chr11	-	754	4	FSM	ENSMUSG00000078974.11	ENSMUST00000166950.8	754	4	0	0	0	0	multi-exon	FALSE	canonical	3	4864	junction_3	651.205207459386	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTATCAAATTTTAGTAA	NA	False	NA	-38	True	AATAAA	-19	NA	16458484	16451637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458103
transcript_16248.known	chr11	+	2943	16	FSM	ENSMUSG00000020122.17	ENSMUST00000102884.10	2943	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.92757763930679	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCTCTTAGTTTCCAAG	NA	False	NA	NA	False	AATAAA	-19	NA	16702202	16837923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_16702571_16808895_16809048_16810067_16810252_16812945_16813081_16817230_16817300_16818107_16818227_16819218_16819361_16820975_16821093_16821582_16821710_16821801_16821876_16822845_16822937_16824959_16825160_16828126_16828260_16831463_16831555_16833455_16833614_16837140
transcript_16250.known	chr11	-	598	4	FSM	ENSMUSG00000087060.8	ENSMUST00000129735.8	598	4	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	10.4243305140746	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTAATTTTATTTTTATG	NA	False	NA	NA	False	NA	NA	NA	16901100	16885585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_16885927_16886454_16886565_16900881_16900931_16901002
transcript_16251.known	chr11	-	941	4	FSM	ENSMUSG00000087060.8	ENSMUST00000139493.8	941	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	8.73053390247253	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGAAGGTGTATCGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	16901118	16885158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_16885842_16886454_16886565_16900881_16900931_16901019
transcript_16254.known	chr11	-	1540	3	FSM	ENSMUSG00000087060.8	ENSMUST00000130392.8	1540	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTATCGTTTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16901099	16885153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_16886565_16900881_16900931_16901019
transcript_16256.known	chr11	+	2002	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	21.86601127274	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTGGAGGCGTTGA	2471	False	NA	8	True	AATAAA	-10	NA	17161917	17183796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
transcript_16265.known	chr11	-	1544	7	FSM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	0	0	0	0	multi-exon	FALSE	canonical	3	1392	junction_5	81.0276016072438	471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	False	NA	48	True	AGTAAA	-19	NA	17161568	17153197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
transcript_16269.known	chr11	+	2859	6	FSM	ENSMUSG00000033953.11	ENSMUST00000102880.5	2859	6	0	0	0	0	multi-exon	FALSE	canonical	3	579	junction_5	55.0962793662149	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGAATGTATTGTGTCAG	NA	False	NA	11	True	AATAAA	-15	NA	17109262	17150375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_17109543_17132106_17132147_17142956_17143134_17144216_17144277_17144668_17144854_17148258
transcript_16277.known	chr11	+	2981	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_3	54.4908249157599	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATTTTACAGTTGTCAC	7331	False	NA	NA	False	TATAAA	-17	NA	17207593	17219176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
transcript_16278.known	chr11	+	684	5	FSM	ENSMUSG00000000581.9	ENSMUST00000156784.2	684	5	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_1	280.161895160637	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACGCACTCTGGGAACCC	7425	False	NA	NA	False	NA	NA	NA	17207687	17216624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_17208008_17212647_17212795_17213608_17213676_17213950_17214007_17216530
transcript_16279.known	chr11	-	4185	6	FSM	ENSMUSG00000016984.8	ENSMUST00000076661.7	4185	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	14.7322774885623	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAGAGTGAAGAGACTAG	NA	False	NA	NA	False	AATAAA	-18	NA	17903875	17888755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_17890351_17895606_17897568_17897774_17897888_17902251_17902329_17902577_17902704_17903562
transcript_16285.nic	chr11	-	663	4	ISM	ENSMUSG00000016984.8	ENSMUST00000076661.7	4185	6	-34	9019	-34	-9019	5prime_fragment	FALSE	canonical	3	158	junction_3	14.0079342596338	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTCACCCTCCTCCTG	NA	False	NA	0	True	NA	NA	NA	17903909	17897774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_17897888_17902251_17902329_17902577_17902704_17903562
transcript_16288.known	chr11	+	388	2	FSM	ENSMUSG00000086468.2	ENSMUST00000148496.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAAGGGCTATGCT	NA	False	NA	NA	False	NA	NA	NA	17904003	17905098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_17904086_17904792
transcript_16290.known	chr11	-	3196	13	FSM	ENSMUSG00000020160.19	ENSMUST00000068264.14	3196	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	0.897527467855751	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTATTGCATTTATTT	NA	False	NA	NA	False	AATAAA	-30	NA	18968958	18830661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_18831923_18833987_18834083_18834386_18834477_18835592_18835652_18855688_18855766_18891658_18891805_18938267_18938380_18961241_18961389_18962809_18962861_18963631_18963683_18964249_18964392_18966132_18966360_18968220
transcript_16293.known	chr11	+	2852	6	FSM	ENSMUSG00000045671.18	ENSMUST00000093298.12	2852	6	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_2	8.95767827062348	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAAAAAACCCTC	NA	False	NA	NA	False	AAAACA	-12	NA	19874441	19972577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_19874957_19948119_19948298_19955781_19955951_19958412_19958478_19968051_19968190_19970790
transcript_16295.nnic	chr11	+	2441	6	NNC	ENSMUSG00000045671.18	novel	4449	7	NA	NA	28571	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	25.0647162361755	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAAAAAACCCTC	7169	False	NA	NA	False	AAAACA	-12	NA	19933140	19972577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_19933245_19948119_19948298_19955781_19955951_19958412_19958478_19968051_19968190_19970790
transcript_16298.nnic	chr11	+	1797	2	NNC	ENSMUSG00000045671.18	novel	2852	6	NA	NA	-314	-72104	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATGCATTTCGTTTTTA	NA	False	NA	NA	False	AGTAAA	-17	NA	19874060	19896029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_19874957_19895128
transcript_16299.known	chr11	-	3631	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	0	0	0	0	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1336	False	NA	-4	True	AATAAA	-19	NA	20062913	20012303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
transcript_16303.known	chr11	-	2087	6	FSM	ENSMUSG00000020152.8	ENSMUST00000132022.2	2087	6	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_1	59.9486446885999	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	1382	False	NA	NA	False	NA	NA	NA	20062867	20028685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
transcript_16307.known	chr11	-	452	2	FSM	ENSMUSG00000020152.8	ENSMUST00000134779.2	452	2	0	0	0	0	multi-exon	FALSE	canonical	3	909	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGATACATATTAGTGC	1340	False	NA	NA	False	TATAAA	-26	NA	20062909	20050586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20050934_20062804
transcript_16309.known	chr11	+	2657	6	FSM	ENSMUSG00000020149.18	ENSMUST00000163483.2	2657	6	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	20151601	20176856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
transcript_16313.known	chr11	-	4804	7	FSM	ENSMUSG00000044066.15	ENSMUST00000050611.14	4804	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	29.8756682863422	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGGTGTTGTATCATTT	3055	False	NA	NA	False	ATTAAA	-23	NA	20199418	20177036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20179482_20180423_20180595_20186005_20186103_20188465_20188589_20189195_20190699_20191885_20192239_20199306
transcript_16324.known	chr11	-	2171	4	FSM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	18.3726850393609	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTAGCTCAGTTGACT	3055	False	NA	-8	True	AATAAA	-17	NA	20199418	20188385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20188589_20189195_20190699_20191885_20192239_20199306
transcript_16327.known	chr11	-	2788	3	FSM	ENSMUSG00000044066.15	ENSMUST00000162811.2	2788	3	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	11	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTAGCTCAGTTGAC	3044	False	NA	-9	True	AATAAA	-16	NA	20199429	20188386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20190699_20191885_20192239_20199306
transcript_16328.known	chr11	-	793	2	FSM	ENSMUSG00000044066.15	ENSMUST00000161218.2	793	2	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTCCATGACTGGAGGA	3090	False	NA	NA	False	NA	NA	NA	20199383	20191522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20192239_20199306
transcript_16335.known	chr11	-	3872	8	FSM	ENSMUSG00000020142.13	ENSMUST00000004634.7	3872	8	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	11.5440593433354	386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAGTAACGTGTTTTTC	7790	False	NA	-5	True	NA	NA	NA	20282684	20252204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20254501_20256465_20256601_20257891_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
transcript_1634.nic	chr1	-	1649	11	ISM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	-42	17982	-42	0	5prime_fragment	FALSE	canonical	3	1138	junction_7	128.097970319596	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTTGCTTTTAAAAATT	NA	False	NA	NA	False	AAAAAG	-13	NA	55066682	55042309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
transcript_16341.nnic	chr11	+	2044	3	NIC	ENSMUSG00000049800.14	novel	639	3	NA	NA	-129	58	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	3	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATATATCTATATTATT	NA	False	NA	22	True	NA	NA	NA	20493123	20599123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_20493761_20545129_20545215_20597801
transcript_16342.known	chr11	+	5647	2	FSM	ENSMUSG00000049800.14	ENSMUST00000093292.11	5647	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCACAGTTTTCTTGT	NA	False	NA	17	True	AATAAA	-17	NA	20493333	20603021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_20493761_20597801
transcript_16343.known	chr11	+	5515	2	FSM	ENSMUSG00000049800.14	ENSMUST00000109586.3	5515	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCACAGTTTTCTTGT	NA	False	NA	17	True	AATAAA	-17	NA	20581978	20603021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_20582274_20597801
transcript_16346.known	chr11	-	3998	9	FSM	ENSMUSG00000049659.16	ENSMUST00000035350.12	3998	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	17.066048165876	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCCTTTTGTCTTTGTA	9260	False	NA	NA	False	AATAAA	-16	NA	20691589	20635083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20636199_20642464_20642589_20648312_20648374_20653710_20653834_20658680_20658738_20659619_20659747_20662163_20662316_20675684_20677640_20691305
transcript_16351.known	chr11	-	3362	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGGGTTATTACAT	NA	False	NA	-3	True	AATAAA	-17	NA	20781056	20773575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
transcript_16354.known	chr11	+	3514	7	FSM	ENSMUSG00000020134.14	ENSMUST00000093290.12	3514	7	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	13.7931142241337	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGCGAATTTGTCTGTG	NA	False	NA	27	True	AGTAAA	-15	NA	21041290	21100323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_21041679_21086045_21086186_21090563_21090694_21092555_21092658_21096914_21097113_21097257_21097447_21097956
transcript_16364.known	chr11	+	4323	23	FSM	ENSMUSG00000020128.16	ENSMUST00000006221.14	4323	23	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_2	46.1409984237141	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTTCAATGGTACAGTA	NA	False	NA	33	True	AATAAA	-29	NA	21189280	21271136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_21189372_21213198_21213355_21214629_21214872_21218784_21218864_21221703_21221739_21224997_21225130_21227674_21228061_21241032_21241160_21242023_21242132_21245340_21245397_21248753_21248851_21249977_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
transcript_16367.known	chr11	+	4273	23	FSM	ENSMUSG00000020128.16	ENSMUST00000109578.8	4273	23	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_2	56.2718460791631	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTAAAAGGCAACTTTTT	NA	False	NA	19	True	AATAAA	-15	NA	21189280	21271122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_21189372_21213198_21213355_21214665_21214872_21218784_21218864_21221703_21221739_21224997_21225130_21227674_21228061_21241032_21241160_21242023_21242132_21245340_21245397_21248753_21248851_21249977_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
transcript_1637.known	chr1	-	3403	10	FSM	ENSMUSG00000025982.14	ENSMUST00000187500.7	3403	10	0	0	0	0	multi-exon	FALSE	canonical	3	1240	junction_5	107.350930234545	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTTGCTTTTAAAAATT	NA	False	NA	NA	False	AAAAAG	-13	NA	55066623	55042309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055650_55055937_55056043_55058392_55058560_55066497
transcript_16376.known	chr11	-	2044	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	61.1714853284106	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGCTGTCTAGTGCTCA	NA	False	NA	-7	True	AATAAA	-21	NA	21321201	21271672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
transcript_16377.known	chr11	-	2683	10	FSM	ENSMUSG00000001891.17	ENSMUST00000102875.11	2683	10	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_9	120.111779214916	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTTAAGTCTGTTT	NA	False	NA	NA	False	AATATA	-18	NA	21320477	21271137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21320186
transcript_16387.known	chr11	+	2792	18	FSM	ENSMUSG00000020319.10	ENSMUST00000020568.10	2792	18	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	3.74350648863466	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAATTTCTTCTCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	21522234	21848989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_21522371_21602225_21602311_21609994_21610043_21610888_21610940_21613996_21614068_21614325_21614386_21639567_21639683_21641769_21641904_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21836259_21836289_21848475
transcript_1639.known	chr1	-	600	7	FSM	ENSMUSG00000025982.14	ENSMUST00000191303.2	600	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	678.357002044073	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGAAAAAGCTAAAGCTGG	NA	False	NA	NA	False	NA	NA	NA	55066553	55051410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_55051432_55053641_55053722_55054027_55054084_55055534_55055650_55055937_55056043_55058392_55058560_55066497
transcript_16390.known	chr11	-	2122	9	FSM	ENSMUSG00000020321.17	ENSMUST00000102874.11	2122	9	0	0	0	0	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	836	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGGCTGTAATTTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	21522193	21506786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
transcript_16393.known	chr11	-	2789	5	FSM	ENSMUSG00000005917.16	ENSMUST00000006071.14	2789	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0.433012701892219	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTGCTCTTCTAATTCCA	NA	False	NA	NA	False	AATAAA	-25	NA	21951615	21944763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_21947059_21948369_21948522_21949379_21949586_21951121_21951190_21951547
transcript_16401.known	chr11	+	1568	4	FSM	ENSMUSG00000049904.8	ENSMUST00000059319.8	1568	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	9.0921211313239	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTATCTGTGTAGTTC	NA	False	NA	7	True	ATTAAA	-16	NA	22462087	22469234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_22462584_22467187_22467292_22467407_22467522_22468380
transcript_16402.known	chr11	-	3057	2	FSM	ENSMUSG00000051650.12	ENSMUST00000062844.11	3057	2	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	0	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACGTATAATAAGTGATAC	3969	False	NA	-28	True	AATAAA	-21	NA	22810101	22784746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_22787196_22809493
transcript_16403.known	chr11	-	2602	2	FSM	ENSMUSG00000051650.12	ENSMUST00000055549.4	2602	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATACTAGTATCTTGTAA	3582	False	NA	-18	True	AATAAA	-18	NA	22810488	22784864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_22787196_22810217
transcript_16411.known	chr11	-	4508	3	FSM	ENSMUSG00000051355.19	ENSMUST00000159081.8	4508	3	0	0	0	0	multi-exon	FALSE	canonical	3	2089	junction_1	53.5	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGGTTCCAGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	22932382	22846135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_22850058_22906410_22906693_22932078
transcript_16419.known	chr11	+	2484	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	0	0	0	0	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	4322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCCAGATGTTAGGTCT	NA	False	NA	NA	False	NA	NA	NA	22940518	22953780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
transcript_16431.known	chr11	+	1634	13	FSM	ENSMUSG00000007739.11	ENSMUST00000020562.5	1634	13	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_2	1486.11417938416	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGATAAAAGGATGGTTG	NA	False	NA	NA	False	NA	NA	NA	22940649	22953151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_22940881_22943266_22943320_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
transcript_16442.known	chr11	+	1736	8	FSM	ENSMUSG00000007739.11	ENSMUST00000174244.8	1736	8	0	0	0	0	multi-exon	FALSE	canonical	3	4673	junction_2	250.300227889694	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGAAAACCACAT	NA	False	NA	NA	False	NA	NA	NA	22940638	22949876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032
transcript_16445.known	chr11	+	1947	5	FSM	ENSMUSG00000049811.18	ENSMUST00000109557.10	1947	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.96419413859206	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTCCTGACACGGTTTG	NA	False	NA	19	True	AATAAA	-30	NA	22958464	22973741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_22958627_22963538_22963648_22965654_22965885_22969999_22971134_22973429
transcript_16446.nnic	chr11	+	2031	5	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	-36	0	combination_of_known_splicesites	TRUE	canonical	3	12	junction_4	2.95803989154981	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCTCAAGACATTCCT	NA	False	NA	8	True	AATAAA	-19	NA	22958428	22973730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_22958627_22965654_22965885_22969999_22971134_22971493_22971662_22973429
transcript_16448.known	chr11	+	1935	4	FSM	ENSMUSG00000049811.18	ENSMUST00000172602.9	1935	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	7.40870359029762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCATGTACCTCAAGAC	NA	False	NA	2	True	AATAAA	-13	NA	22958346	22973724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_22958627_22965658_22965885_22969999_22971134_22973429
transcript_16449.known	chr11	+	1047	3	FSM	ENSMUSG00000049811.18	ENSMUST00000151877.2	1047	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCTCAAGACATTCCT	NA	False	NA	8	True	AATAAA	-19	NA	22970555	22973730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_22971134_22971493_22971662_22973429
transcript_16457.known	chr11	+	4906	26	FSM	ENSMUSG00000020290.15	ENSMUST00000109551.8	4906	26	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	458.823200808329	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCACTGTGGGGTTTAG	NA	False	NA	NA	False	NA	NA	NA	23206040	23247597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_23206163_23206645_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
transcript_16461.known	chr11	+	5145	26	FSM	ENSMUSG00000020290.15	ENSMUST00000020538.13	5145	26	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	458.823200808329	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCACTGTGGGGTTTAG	NA	False	NA	NA	False	NA	NA	NA	23206040	23247597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_23206168_23206411_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
transcript_16465.nnic	chr11	+	3816	26	NNC	ENSMUSG00000020290.15	novel	3471	26	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.823200808329	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGTGTTTTTTGTAT	NA	False	NA	12	True	ATTAAA	-21	NA	23206010	23246233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_23206202_23206440_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
transcript_16477.known	chr11	+	6004	25	FSM	ENSMUSG00000020290.15	ENSMUST00000102869.8	6004	25	0	0	0	0	multi-exon	FALSE	canonical	2	1142	junction_7	252.998761388053	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCAACCAGTGCAAATTC	NA	False	NA	NA	False	AATAAA	-41	NA	23206077	23248249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
transcript_1648.known	chr1	+	1733	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_4	22.7486263321547	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGTTATTTAAATCTTT	3559	False	NA	22	True	AATAAA	-28	NA	55091928	55111861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
transcript_16517.nic	chr11	+	957	3	ISM	ENSMUSG00000056342.17	ENSMUST00000137823.8	11363	80	-524	156062	-503	-86970	5prime_fragment	FALSE	canonical	3	16	junction_1	2.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAACTCTACAAGAACTTG	181	False	NA	NA	False	AATACA	-28	NA	23256391	23283682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_23257017_23270660_23270749_23283438
transcript_16520.known	chr11	-	3023	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	0	0	0	0	multi-exon	TRUE	canonical	3	225	junction_2	27.6394193137265	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCACTGAAATCCTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	23448030	23438546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
transcript_16542.known	chr11	-	4128	22	FSM	ENSMUSG00000042208.16	ENSMUST00000180260.8	4128	22	0	0	0	0	multi-exon	TRUE	canonical	3	83	junction_12	9.91208520476776	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAATTGTGGAGAAAGT	NA	False	NA	-15	True	AATAAA	-9	NA	23583631	23523787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_23525518_23526730_23526823_23531595_23531685_23532866_23532941_23533097_23533127_23534519_23534612_23538634_23538735_23539950_23539984_23543425_23543526_23545380_23545527_23556613_23556767_23559000_23559125_23561746_23561858_23561961_23562049_23565095_23565257_23567137_23567197_23570228_23570468_23572435_23572530_23574935_23575123_23578872_23579032_23581204_23581335_23583492
transcript_16547.nic	chr11	-	2065	16	ISM	ENSMUSG00000042208.16	ENSMUST00000180260.8	4128	22	-43	14847	-35	-12005	5prime_fragment	FALSE	canonical	3	83	junction_6	9.9643810088178	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATTAAAATCAACCCTCA	NA	False	NA	NA	False	AAGAAA	-16	NA	23583674	23538634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_23538735_23539950_23539984_23543425_23543526_23545380_23545527_23556613_23556767_23559000_23559125_23561746_23561858_23561961_23562049_23565095_23565257_23567137_23567197_23570228_23570468_23572435_23572530_23574935_23575123_23578872_23579032_23581204_23581335_23583492
transcript_16549.nic	chr11	-	1174	8	ISM	ENSMUSG00000042208.16	ENSMUST00000180260.8	4128	22	-43	41345	-35	-3303	5prime_fragment	FALSE	canonical	3	105	junction_4	3.92272291935599	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGATGACTTAAAAGACAAA	NA	False	NA	NA	False	AATGAA	-2	NA	23583674	23565132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_23565257_23567137_23567197_23570228_23570468_23572435_23572530_23574935_23575123_23578872_23579032_23581204_23581335_23583492
transcript_16553.nnic	chr11	+	3467	18	NNC	ENSMUSG00000020280.13	novel	3559	18	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_16	30.4802392165639	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23616137	23682876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678935_23679075_23681320
transcript_16554.known	chr11	+	3559	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	15.9356404539699	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23616006	23682876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
transcript_16567.known	chr11	-	4146	4	FSM	ENSMUSG00000020283.6	ENSMUST00000020523.4	4146	4	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_1	13.1993265821489	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACAGCCTGAATGCGT	NA	False	NA	NA	False	NA	NA	NA	23615959	23596478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_23599591_23600929_23601056_23605435_23606131_23615746
transcript_16572.known	chr11	-	3747	22	FSM	ENSMUSG00000020273.14	ENSMUST00000020513.10	3747	22	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	18.5612914946701	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTCTTTAATTTTTT	1269	False	NA	-1	True	TTTAAA	-8	NA	23845253	23812645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
transcript_16576.known	chr11	+	3061	5	FSM	ENSMUSG00000000861.16	ENSMUST00000000881.13	3061	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGTGTGTGCTTGTTTTT	NA	False	NA	14	True	AATAAA	-14	NA	24028055	24123194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_24028446_24035320_24035651_24108252_24108355_24113145_24114889_24122698
transcript_16578.nic	chr11	-	2184	13	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	30.8175635348128	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26544011	26421403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543385
transcript_16579.known	chr11	-	1889	13	FSM	ENSMUSG00000064090.15	ENSMUST00000078362.13	1889	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_12	13.1368332899862	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543920	26421403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543589
transcript_16581.known	chr11	+	2724	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTAGTCATTAACACCC	NA	False	NA	13	True	AATAAA	-15	NA	26336134	26421876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
transcript_1659.known	chr1	-	2423	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	0	0	0	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	3605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4455	False	NA	-6	True	AATAAA	-16	NA	55127183	55116993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
transcript_16593.known	chr11	+	1187	14	FSM	ENSMUSG00000004018.10	ENSMUST00000109509.8	1187	14	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	68.2542237026723	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCAATTTATTTGATG	NA	False	NA	3	True	AATAAA	-10	NA	26337201	26421421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418815_26418883_26419651_26419769_26420876_26420949_26421324
transcript_16598.known	chr11	+	2707	28	FSM	ENSMUSG00000020464.16	ENSMUST00000020756.9	2707	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	125.489275633577	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGCTTGCCTACTATT	NA	False	NA	NA	False	NA	NA	NA	29080747	29111828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
transcript_1660.nic	chr1	-	2483	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4185	False	NA	-6	True	AATAAA	-16	NA	55127453	55116993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
transcript_16600.nnic	chr11	+	2560	28	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-24	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	159.252962838496	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTTTTATATCTTAGGA	NA	False	NA	8	True	AATAAA	-20	NA	29080719	29111680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103258_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
transcript_16625.known	chr11	+	459	5	FSM	ENSMUSG00000020464.16	ENSMUST00000148173.2	459	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	270.075336711815	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAATGCTGCTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	29080747	29085563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29080919_29082844_29082906_29083855_29083927_29084599_29084706_29085513
transcript_16634.known	chr11	+	5125	16	FSM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_14	38.0796825383593	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACGTGTTTTAATCACTA	NA	False	NA	23	True	AATAAA	-35	NA	29122889	29170797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455
transcript_16655.nic	chr11	+	3397	14	ISM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	-818	9007	-818	2149	5prime_fragment	FALSE	canonical	3	259	junction_3	32.5538243420023	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTACTAATGTTTGTAATTT	NA	False	NA	NA	False	ACTAAA	-4	NA	29122071	29161790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606
transcript_16657.nic	chr11	+	2381	13	ISM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	-12	9568	-12	1588	5prime_fragment	FALSE	canonical	3	259	junction_3	32.1411816141777	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAGACAAAATCAGAAACT	NA	False	NA	NA	False	ACTAAA	-16	NA	29122877	29161229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115
transcript_16658.known	chr11	+	2410	12	FSM	ENSMUSG00000020463.16	ENSMUST00000102856.9	2410	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	30.8097333552481	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTTTATTCTTACTT	NA	False	NA	NA	False	AATAAA	-19	NA	29122889	29159641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316
transcript_16662.known	chr11	-	2203	2	FSM	ENSMUSG00000086725.2	ENSMUST00000129876.2	2203	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTCCTGCAGAATAATT	NA	False	NA	NA	False	NA	NA	NA	29123558	29120908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_29122952_29123398
transcript_16664.known	chr11	-	1664	10	FSM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	19.5037191768236	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTTTTCTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	29197409	29171531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_29171986_29172433_29172584_29172743_29172884_29175856_29175960_29179907_29179960_29180585_29180674_29184357_29184473_29194058_29194161_29195085_29195151_29197014
transcript_16672.nic	chr11	+	2651	15	ISM	ENSMUSG00000032740.18	ENSMUST00000239407.2	6051	31	-807	41498	-117	2079	5prime_fragment	FALSE	canonical	3	45	junction_8	7.3404804380384	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATTAGAGCTTTATAAAG	NA	False	NA	NA	False	AAAAAG	-13	NA	29323540	29413307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848_29411034_29411710_29411849_29413119
transcript_16673.nic	chr11	+	2363	14	ISM	ENSMUSG00000032740.18	ENSMUST00000239407.2	6051	31	-707	42957	-17	620	5prime_fragment	FALSE	canonical	3	45	junction_8	7.52038649390784	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGTGCATCTCACTTAAG	NA	False	NA	NA	False	AATAGA	-29	NA	29323640	29411848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848_29411034_29411710
transcript_16675.nic	chr11	+	2247	13	ISM	ENSMUSG00000032740.18	ENSMUST00000239407.2	6051	31	-754	43797	-64	-220	5prime_fragment	FALSE	canonical	3	45	junction_8	7.79244648504064	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAACCAGAGACTGAATA	NA	False	NA	NA	False	NA	NA	NA	29323593	29411008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848
transcript_16679.nic	chr11	+	1995	11	ISM	ENSMUSG00000032740.18	ENSMUST00000239407.2	6051	31	-807	49289	-117	-5712	5prime_fragment	TRUE	canonical	3	45	junction_8	7.97558775263617	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGATTTAGGGAATTCAT	NA	False	NA	NA	False	AAAAAG	-42	NA	29323540	29405516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369
transcript_16682.known	chr11	+	9376	32	FSM	ENSMUSG00000032740.18	ENSMUST00000040182.13	9376	32	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_31	11.5379300285811	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGTTACAGTCATTTT	NA	False	NA	NA	False	AATAAA	-21	NA	29323657	29460808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29324411_29324506_29324608_29350183_29350293_29372539_29372610_29374771_29374831_29379332_29379417_29380111_29380253_29397895_29398069_29401021_29401104_29403118_29403278_29405369_29405517_29406457_29406603_29410848_29411034_29411710_29411849_29413119_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851_29454312_29457124_29457224_29457694
transcript_16683.known	chr11	-	2126	3	FSM	ENSMUSG00000032673.6	ENSMUST00000133103.2	2126	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTGGGGTTTATTTT	NA	False	NA	NA	False	AATAAA	-11	NA	29465031	29461756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_29463677_29464431_29464523_29464916
transcript_16685.known	chr11	-	918	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGTCTTTAATTTG	NA	False	NA	-1	True	AATAAA	-23	NA	29465033	29462875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_29463677_29464916
transcript_16687.nic	chr11	+	2624	15	NIC	ENSMUSG00000020459.15	novel	2425	14	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	61.3790913678498	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAATGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	29476399	29495279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_29476488_29476692_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
transcript_16693.known	chr11	+	2425	14	FSM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	55.902387454177	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAATGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	29476447	29495279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
transcript_16699.known	chr11	+	2741	14	FSM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	30.3862706462472	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	29476456	29495248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
transcript_16718.known	chr11	+	1605	9	FSM	ENSMUSG00000020459.15	ENSMUST00000144321.8	1605	9	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	24.4716034415402	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGGAAAAATACTTAAT	NA	False	NA	NA	False	NA	NA	NA	29476449	29490165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067
transcript_16722.known	chr11	+	741	5	FSM	ENSMUSG00000020459.15	ENSMUST00000133452.8	741	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	83.2927818001056	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAATTTAGCACTTACTA	NA	False	NA	38	True	AATAAA	-15	NA	29476407	29483397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29476488_29476692_29476844_29479928_29480155_29480580_29480693_29483225
transcript_16727.nic	chr11	+	601	4	ISM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	-51	11882	-11	0	5prime_fragment	FALSE	canonical	3	41	junction_1	80.1387685344754	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAATTTAGCACTTACTA	NA	False	NA	38	True	AATAAA	-15	NA	29476396	29483397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225
transcript_16728.nic	chr11	+	943	4	ISM	ENSMUSG00000020459.15	ENSMUST00000144321.8	1605	9	-39	6768	3	0	5prime_fragment	FALSE	canonical	3	177	junction_1	16.0277537068951	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAATTTAGCACTTACTA	NA	False	NA	38	True	AATAAA	-15	NA	29476410	29483397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225
transcript_16729.known	chr11	+	725	5	FSM	ENSMUSG00000020459.15	ENSMUST00000136351.8	725	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	90.8418956209083	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGACAAACTTCGAGAAAC	NA	False	NA	NA	False	NA	NA	NA	29476435	29483916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29476566_29479928_29480155_29480580_29480693_29483225_29483398_29483831
transcript_16731.known	chr11	-	791	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5362.30439270282	2517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29498109	29495845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
transcript_16734.known	chr11	-	637	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5966.04937856703	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29497860	29495845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
transcript_16735.known	chr11	-	928	5	FSM	ENSMUSG00000020460.16	ENSMUST00000150739.2	928	5	0	0	0	0	multi-exon	FALSE	canonical	3	7569	junction_4	3562.36217277244	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACCAGAAGACAAGTAGT	NA	False	NA	-84	True	NA	NA	NA	29497882	29495898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29497261_29497680_29497746_29497840
transcript_16743.known	chr11	-	8083	42	FSM	ENSMUSG00000044072.15	ENSMUST00000058902.6	8083	42	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.10861640754766	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCTTTGTTCTTAAGC	NA	False	NA	NA	False	AATAAA	-15	NA	29976033	29693047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_29694611_29696247_29696349_29696757_29696912_29697429_29697534_29699258_29699422_29699804_29699978_29701188_29701378_29702435_29702551_29703063_29703222_29704847_29705057_29708933_29709108_29710021_29710121_29711592_29711723_29714047_29714127_29727002_29727130_29727243_29727446_29734063_29734241_29735666_29735756_29741972_29742105_29742259_29742413_29745220_29745363_29752429_29752558_29753055_29753168_29755031_29755235_29755713_29755815_29759313_29759408_29768341_29768448_29768905_29769093_29771638_29771758_29781098_29781206_29783054_29783223_29788426_29788640_29798814_29799072_29800817_29800956_29804050_29804253_29830646_29830783_29831957_29832144_29843187_29843257_29847143_29847243_29856171_29856332_29974379_29975101_29975889
transcript_16746.known	chr11	+	4618	9	FSM	ENSMUSG00000020458.17	ENSMUST00000102843.10	4618	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	355.342066711781	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29642946	29692916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29643694_29655534_29655592_29656409_29658771_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
transcript_16748.known	chr11	+	2257	8	FSM	ENSMUSG00000020458.17	ENSMUST00000102842.10	2257	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	364.665796116311	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29642946	29692916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29643694_29655534_29655592_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
transcript_16750.known	chr11	+	1773	7	FSM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	322.410409605866	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29668562	29692916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_29668883_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
transcript_16753.nic	chr11	+	3670	3	ISM	ENSMUSG00000020458.17	ENSMUST00000102843.10	4618	9	-2002	35643	-2002	-34838	5prime_fragment	FALSE	canonical	0	0	junction_2	120	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAGAAAGGAAGGCCCAA	NA	False	NA	NA	False	AAAACA	-19	NA	29640944	29657273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_29643694_29655534_29655592_29656409
transcript_16760.nic	chr11	-	3724	15	ISM	ENSMUSG00000020315.19	ENSMUST00000102838.10	9107	31	-12	30327	-12	-27164	5prime_fragment	FALSE	canonical	3	341	junction_12	30.1015288783863	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATCGACAATTATGAGG	1808	False	NA	NA	False	NA	NA	NA	30148269	30087111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_30087631_30088363_30088502_30088591_30089463_30090470_30090625_30092119_30092423_30093018_30093178_30094105_30094224_30095828_30096017_30096738_30096852_30099499_30099616_30099929_30100011_30101555_30101648_30104228_30104403_30109293_30109446_30147723
transcript_16766.nic	chr11	-	1283	8	ISM	ENSMUSG00000020315.19	ENSMUST00000102838.10	9107	31	1	39210	1	-36047	5prime_fragment	FALSE	canonical	3	341	junction_5	28.3700042801749	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAGAAAATGATTGAGAAG	1821	False	NA	NA	False	NA	NA	NA	30148256	30095994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_30096017_30096738_30096852_30099499_30099616_30099929_30100011_30101555_30101648_30104228_30104403_30109293_30109446_30147723
transcript_16768.nic	chr11	-	1092	4	ISM	ENSMUSG00000020315.19	ENSMUST00000102838.10	9107	31	-188	44819	-188	-41656	5prime_fragment	FALSE	canonical	3	341	junction_1	38.8615777114391	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGCTAAGGATGCATTGC	1632	False	NA	NA	False	NA	NA	NA	30148445	30101603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_30101648_30104228_30104403_30109293_30109446_30147723
transcript_16769.known	chr11	-	863	4	FSM	ENSMUSG00000060923.6	ENSMUST00000074613.4	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6.84754619472471	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTACTGTTGCCTA	NA	False	NA	NA	False	AATAAA	-15	NA	30599587	30455990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_30456440_30582207_30582318_30583685_30583703_30599300
transcript_16777.known	chr11	+	3228	10	FSM	ENSMUSG00000020305.14	ENSMUST00000020551.13	3228	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_7	7.49979423586054	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTTATTATTGTGGTTT	NA	False	NA	NA	False	TATAAA	-14	NA	30904394	31052704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_30904570_30948312_30948522_30978907_30979067_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
transcript_16781.known	chr11	-	2532	14	FSM	ENSMUSG00000020311.18	ENSMUST00000073192.14	2532	14	0	0	0	0	multi-exon	TRUE	canonical	2	57	junction_8	15.3746121325012	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTTCATGCTTTTGTTC	NA	False	NA	NA	False	AATAAA	-12	NA	30904152	30880773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899942_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
transcript_16785.known	chr11	-	1315	3	FSM	ENSMUSG00000020309.7	ENSMUST00000101394.5	1315	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAAGTGTCATTTCT	NA	False	NA	NA	False	AATAAA	-33	NA	30936350	30926706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_30927747_30929564_30929601_30936111
transcript_16788.known	chr11	-	1018	2	FSM	ENSMUSG00000020309.7	ENSMUST00000020553.5	1018	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAATTGTACTTTTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	30936334	30926951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_30927747_30936111
transcript_16793.known	chr11	-	3940	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACCTGCTCCTGAGCAG	NA	False	NA	NA	False	AATAAA	-12	NA	31320074	31307306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
transcript_16798.nic	chr11	-	746	2	ISM	ENSMUSG00000020303.3	ENSMUST00000152094.2	447	3	-81	0	-54	0	intron_retention	FALSE	canonical	3	18	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATGACATTTTCTTT	NA	False	NA	NA	False	AATACA	-22	NA	31320128	31317998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_31318328_31319711
transcript_16800.known	chr11	-	1394	4	FSM	ENSMUSG00000044502.17	ENSMUST00000058060.14	1394	4	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_1	23.4141457717813	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGACGATCTTTCCC	NA	False	NA	-29	True	AATAAA	-22	NA	31621885	31615180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_31615868_31616736_31616934_31619243_31619369_31621500
transcript_16801.known	chr11	-	799	3	FSM	ENSMUSG00000044502.17	ENSMUST00000109415.2	799	3	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_1	17	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCTGAAATTGCTTACAC	NA	False	NA	NA	False	NA	NA	NA	31621727	31616486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_31616934_31619243_31619369_31621500
transcript_16804.known	chr11	+	2000	5	FSM	ENSMUSG00000020299.7	ENSMUST00000102829.4	2000	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	0.707106781186548	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTGAGTATCCTTGGCC	2284	False	NA	NA	False	GATAAA	-14	NA	31915591	31929651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_31915952_31923555_31923642_31925036_31925136_31926785_31926831_31928241
transcript_16807.known	chr11	+	2239	5	FSM	ENSMUSG00000020297.11	ENSMUST00000020537.9	2239	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	2.06155281280883	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGACTGTCTGTCCAT	NA	False	NA	21	True	AATAAA	-17	NA	31950462	32009202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_31950597_31951730_31951881_31967650_31967735_32005012_32005124_32007442
transcript_16808.known	chr11	+	821	5	FSM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	16.768646337734	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCAGAAAGCCATAGT	NA	False	NA	21	True	AATAAA	-22	NA	32155414	32158984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158684
transcript_16809.known	chr11	+	466	4	FSM	ENSMUSG00000040767.11	ENSMUST00000149043.3	466	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	178.781679399453	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTGTAGGTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	32155445	32158408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32155664_32156959_32157044_32157573_32157663_32158333
transcript_16811.known	chr11	-	2946	18	FSM	ENSMUSG00000020282.19	ENSMUST00000020524.15	2946	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	19.5534933028863	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGATTTGTCACTGTTTC	NA	False	NA	-2	True	AATAAA	-35	NA	32172300	32159584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_32160224_32160397_32160552_32160657_32160759_32160826_32160903_32161110_32161206_32161581_32161646_32161919_32162021_32162622_32162785_32162867_32162943_32163051_32163164_32163259_32163518_32163951_32164110_32164181_32164305_32164392_32164603_32164909_32165124_32165933_32166065_32166141_32166283_32172168
transcript_16817.nnic	chr11	-	2168	13	NNC	ENSMUSG00000020289.16	novel	2865	13	NA	NA	2	266	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	46.4665351504595	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGTGTGTATGTGTG	4587	False	NA	-3	True	AATATA	-15	NA	32217687	32182668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_32183117_32183903_32184097_32184702_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
transcript_16820.known	chr11	-	2865	13	FSM	ENSMUSG00000020289.16	ENSMUST00000020530.12	2865	13	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_6	11.6770786871831	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTGCTGAGGCTGAT	4567	False	NA	NA	False	ATTAAA	-15	NA	32217707	32181962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
transcript_16826.known	chr11	-	3417	12	FSM	ENSMUSG00000020289.16	ENSMUST00000141859.8	3417	12	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_10	49.0765972403774	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTTTTTTTCTTTTAT	4585	False	NA	NA	False	NA	NA	NA	32217689	32181262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32213024_32213095_32217422
transcript_16827.known	chr11	-	1642	12	FSM	ENSMUSG00000020289.16	ENSMUST00000109389.9	1642	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	50.164852204449	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGGCAGCATGCCTGTG	4727	False	NA	NA	False	NA	NA	NA	32217547	32182950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32205438_32205569_32213024_32213095_32217422
transcript_16835.known	chr11	+	1404	5	FSM	ENSMUSG00000020287.16	ENSMUST00000142964.8	1404	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	173.059780133918	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAAGTCTCAGCCAGAA	NA	False	NA	25	True	AATAAA	-22	NA	32176504	32182022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32176718_32177751_32177950_32179246_32179617_32179879_32180054_32181573
transcript_16839.known	chr11	+	1737	4	FSM	ENSMUSG00000020287.16	ENSMUST00000020528.14	1737	4	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_1	11.8977121983832	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGATGGCACGCGTGTGT	NA	False	NA	6	True	NA	NA	NA	32176510	32182700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32176718_32177751_32177950_32179848_32180054_32181573
transcript_16846.known	chr11	+	834	2	FSM	ENSMUSG00000020287.16	ENSMUST00000144903.2	834	2	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCTCAGTACAGGCCCAA	NA	False	NA	NA	False	NA	NA	NA	32176529	32178397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32176718_32177751
transcript_16847.known	chr11	+	699	3	FSM	ENSMUSG00000069919.8	ENSMUST00000093209.4	699	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCCTGAGTAGGAAGA	6997	False	NA	NA	False	NA	NA	NA	32233510	32234465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32233802_32233923_32234129_32234262
transcript_16848.known	chr11	+	554	3	FSM	ENSMUSG00000069917.8	ENSMUST00000093207.4	554	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGCCTGCATGCCTGGT	NA	False	NA	NA	False	AATAAA	-12	NA	32246488	32247298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32246619_32246740_32246946_32247079
transcript_16849.known	chr11	+	604	3	FSM	ENSMUSG00000020295.2	ENSMUST00000020535.2	604	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTGAGCCTGGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	32250068	32250873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32250213_32250307_32250513_32250618
transcript_16850.known	chr11	+	7413	13	FSM	ENSMUSG00000040711.9	ENSMUST00000038753.6	7413	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	4.75146176338281	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCATTGCCTAGAAACAGG	271	False	NA	NA	False	AATAAA	-13	NA	32297819	32378173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32297969_32321517_32321599_32331433_32331510_32337927_32338005_32346441_32346534_32347065_32347092_32353860_32353996_32357561_32357667_32361456_32361575_32364200_32364428_32365922_32365973_32367079_32367206_32372022
transcript_16856.known	chr11	+	1012	3	FSM	ENSMUSG00000044949.5	ENSMUST00000051053.5	1012	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTACAATTTCTAATTT	4481	False	NA	NA	False	AATAAA	-29	NA	32405369	32466687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32405547_32449224_32449462_32466089
transcript_16859.known	chr11	+	5026	19	FSM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_8	17.3190824607989	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCAAGCACTGTTGTTC	NA	False	NA	1	True	AATAAA	-12	NA	32483304	32574587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32483560_32505123_32505289_32524498_32524548_32527623_32527774_32537312_32537386_32538755_32538951_32539409_32539492_32546614_32546750_32548438_32548985_32550740_32550872_32553666_32553791_32554120_32554301_32560632_32560726_32562670_32562801_32563461_32563587_32564524_32564714_32565780_32565907_32567848_32567963_32572423
transcript_16862.nnic	chr11	+	2466	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26154	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	21.9696760710454	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCAAGCACTGTTGTTC	1679	False	NA	1	True	AATAAA	-12	NA	32564748	32574587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_32564811_32565780_32565907_32567848_32567963_32572423
transcript_16863.nnic	chr11	+	2431	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26156	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	32.5610537640019	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCAAGCACTGTTGTTC	1681	False	NA	1	True	AATAAA	-12	NA	32564750	32574587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_32564778_32565780_32565907_32567848_32567963_32572423
transcript_16865.nnic	chr11	+	2534	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26160	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	27.0102861065105	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCAAGCACTGTTGTTC	1685	False	NA	1	True	AATAAA	-12	NA	32564754	32574587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_32564885_32565780_32565907_32567848_32567963_32572423
transcript_16866.nnic	chr11	-	1002	4	Antisense	novelGene_ENSMUSG00000020272.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACATTACGATTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	32564707	32562182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr11_-_32562751_32563436_32563566_32563965_32564062_32564498
transcript_16872.nnic	chr11	+	4069	14	NIC	ENSMUSG00000020271.18	novel	4019	14	NA	NA	7	98	combination_of_known_splicesites	FALSE	canonical	3	66	junction_2	141.20424587545	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCTAAGTAATGTCAATAA	NA	False	NA	-11	True	AATAAA	-29	NA	32592730	32696667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_32592936_32602747_32602905_32658187_32658251_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
transcript_16874.known	chr11	+	4019	14	FSM	ENSMUSG00000020271.18	ENSMUST00000076383.8	4019	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	161.467713445156	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTTTGTCTTGCCAGGA	NA	False	NA	31	True	AATAAA	-42	NA	32592874	32696816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32592936_32630200_32630303_32658187_32658251_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
transcript_16876.nnic	chr11	+	4034	13	NIC	ENSMUSG00000020271.18	novel	3821	13	NA	NA	-21	98	combination_of_known_splicesites	FALSE	canonical	3	40	junction_2	145.006225919978	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCTAAGTAATGTCAATAA	NA	False	NA	-11	True	AATAAA	-29	NA	32592702	32696667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_32592936_32602747_32602905_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
transcript_16879.known	chr11	+	3821	13	FSM	ENSMUSG00000020271.18	ENSMUST00000109366.8	3821	13	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_1	93.3590738314529	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTATTGAAACTGTTAAAT	NA	False	NA	NA	False	AATAAA	-14	NA	32592723	32696569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32592936_32658187_32658251_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
transcript_16881.known	chr11	+	3938	13	FSM	ENSMUSG00000020271.18	ENSMUST00000093205.13	3938	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	161.315167710086	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTCTGTCACATTTCT	NA	False	NA	4	True	AATAAA	-15	NA	32592865	32696789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_32592936_32630200_32630303_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
transcript_16884.nnic	chr11	+	4078	12	NIC	ENSMUSG00000020271.18	novel	3821	13	NA	NA	-222	98	combination_of_known_splicesites	FALSE	canonical	3	198	junction_1	77.7587921206735	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCTAAGTAATGTCAATAA	NA	False	NA	-11	True	AATAAA	-29	NA	32592501	32696667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_32592936_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
transcript_16885.nnic	chr11	+	3976	12	NIC	ENSMUSG00000020271.18	novel	3938	13	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	198	junction_1	77.7587921206735	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTCTGTCACATTTCT	NA	False	NA	4	True	AATAAA	-15	NA	32592725	32696789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_32592936_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
transcript_16895.known	chr11	-	1633	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	0	0	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	8748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTCAGTGGATAGT	NA	False	NA	NA	False	AATACA	-9	NA	33113206	33102286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_16912.known	chr11	-	1192	10	FSM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	6125.12875954356	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113072	33102509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_16916.known	chr11	-	1157	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	0	0	0	0	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	1332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGATGTATGTGACAA	NA	False	NA	-22	True	AATAAA	-15	NA	33113077	33104926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_16917.known	chr11	-	966	10	FSM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6470.30156337304	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCTGGTGTCACTGA	NA	False	NA	-7	True	ATTAAA	-11	NA	33113076	33105327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_33105432_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_16928.nic	chr11	-	911	8	ISM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	-199	1384	-69	-686	5prime_fragment	FALSE	canonical	3	16927	junction_5	1688.56497460696	1874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAACCAAAATGGAAAAGA	NA	False	NA	8	True	NA	NA	NA	33113275	33106711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_16938.nic	chr11	-	695	5	ISM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	-140	5007	-10	-4309	5prime_fragment	FALSE	canonical	3	16927	junction_2	1689.70870270588	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGTAAAGAAAGGAAAGATCT	NA	False	NA	NA	False	NA	NA	NA	33113216	33110334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_16941.known	chr11	-	1533	3	FSM	ENSMUSG00000040610.8	ENSMUST00000037746.8	1533	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGCCGCTTTTATTTCG	9490	False	NA	NA	False	AATAAA	-17	NA	33153589	33150751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_33151490_33152428_33152673_33153038
transcript_16946.nic	chr11	-	3705	29	NIC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	-58	-1414	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	43.2524624756104	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCACATGTTTCAAGTCT	NA	False	NA	-4	True	TATAAA	-43	NA	33463804	33163208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
transcript_16952.known	chr11	-	5001	28	FSM	ENSMUSG00000040594.20	ENSMUST00000102815.10	5001	28	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_14	30.62978637606	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGGGCTCCCTTCTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	33463746	33161794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
transcript_16953.nnic	chr11	-	3554	27	NIC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	-58	-1414	combination_of_known_splicesites	FALSE	canonical	3	45	junction_25	39.8224610285058	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCACATGTTTCAAGTCT	NA	False	NA	-4	True	TATAAA	-43	NA	33463804	33163208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33454681_33454829_33463601
transcript_16965.nic	chr11	-	3184	20	ISM	ENSMUSG00000040594.20	ENSMUST00000102815.10	5001	28	-58	84779	-58	-180	5prime_fragment	FALSE	canonical	3	105	junction_6	31.5999053261319	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGAGTACTCTATGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	33463804	33246573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
transcript_16975.known	chr11	-	3280	10	FSM	ENSMUSG00000020159.9	ENSMUST00000020366.8	3280	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.831479419283098	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGCTACTGGGTGGTGAC	8485	False	NA	NA	False	AATAAA	-39	NA	33528957	33500780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_33502843_33504293_33504482_33504967_33505121_33506929_33507068_33513865_33513949_33517212_33517431_33518066_33518135_33522372_33522492_33523317_33523417_33528805
transcript_16985.known	chr11	-	2505	12	FSM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	17.9669117367279	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	False	NA	-7	True	AATAAA	-15	NA	34724468	34700016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
transcript_16991.known	chr11	-	671	2	FSM	ENSMUSG00000069910.3	ENSMUST00000148387.2	671	2	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCTTGAGCCTGAAGTC	NA	False	NA	NA	False	NA	NA	NA	34724419	34721160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_34721727_34724314
transcript_16993.known	chr11	+	7376	7	FSM	ENSMUSG00000018846.9	ENSMUST00000018990.8	7376	7	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	14.5191444498481	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTCCTGCTTGTTTCA	NA	False	NA	15	True	AATAAA	-17	NA	35660310	35682112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_35660775_35666912_35667266_35668393_35668648_35669402_35669580_35672410_35672535_35674274_35674401_35676234
transcript_17.known	ERCC-00051	+	258	1	FSM	ERCC-00051A	DQ516740	258	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00051_+_0_300
transcript_17004.known	chr11	-	2109	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	-1	True	AGTAAA	-17	NA	35725333	35699207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
transcript_17014.nic	chr11	-	1433	11	ISM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	-62	8256	-62	791	5prime_fragment	FALSE	canonical	3	825	junction_7	65.3483741190246	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGGCCGTGCTTCAGC	NA	False	NA	NA	False	NA	NA	NA	35725395	35707463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
transcript_17020.known	chr11	-	4531	23	FSM	ENSMUSG00000018849.7	ENSMUST00000018993.7	4531	23	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_16	29.6517319327484	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTGTCATTTGTCCC	8117	False	NA	NA	False	AATAAA	-18	NA	35871354	35729226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_35730072_35731136_35731259_35732580_35732815_35734981_35735075_35743020_35743186_35744186_35744305_35750922_35751015_35752635_35752777_35758061_35758255_35759923_35760011_35761300_35761382_35761742_35761852_35766440_35766980_35767355_35767446_35774074_35774318_35778889_35778964_35780086_35780234_35782275_35782406_35788202_35788283_35789445_35789523_35801002_35801207_35806002_35806113_35870797
transcript_17030.nnic	chr11	-	825	4	NNC	ENSMUSG00000018849.7	novel	4531	23	NA	NA	11244	-536	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	143.815468183672	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAGCATTAAAATGACAAGA	NA	False	NA	NA	False	NA	NA	NA	35733137	35729762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_35730072_35731136_35731259_35732580_35732815_35732977
transcript_17035.known	chr11	-	1949	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40583601	40570140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
transcript_17036.known	chr11	-	2053	7	FSM	ENSMUSG00000042032.14	ENSMUST00000101347.10	2053	7	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	83.011378068846	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40586030	40570140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
transcript_17041.known	chr11	-	2461	2	FSM	ENSMUSG00000042032.14	ENSMUST00000109307.2	2461	2	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAGGAAAACAAGTT	NA	False	NA	NA	False	AAAAAG	-8	NA	40583455	40576312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_40578623_40583304
transcript_17042.nnic	chr11	-	3690	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.337481440185	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624288	40592221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600631_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17045.known	chr11	-	3892	18	FSM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	0	0	0	0	multi-exon	TRUE	canonical	3	534	junction_10	59.4855104336938	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624249	40592221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17051.nnic	chr11	-	2138	14	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-39	-6171	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	182.482940760607	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGTCAGGCTAGACCTT	NA	False	NA	NA	False	NA	NA	NA	40624288	40598392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_40598545_40598841_40598989_40600631_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17052.nic	chr11	-	2035	14	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-39	6171	-39	-6171	5prime_fragment	FALSE	canonical	3	534	junction_6	64.2459217502439	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGTCAGGCTAGACCTT	NA	False	NA	NA	False	NA	NA	NA	40624288	40598392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17053.nnic	chr11	-	2033	14	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-39	-6276	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	182.482940760607	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGAAATCACATCTTCA	NA	False	NA	NA	False	AAGAAA	-1	NA	40624288	40598497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_40598545_40598841_40598989_40600631_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17054.nic	chr11	-	1930	14	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-39	6276	-39	-6276	5prime_fragment	FALSE	canonical	3	534	junction_6	64.2459217502439	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGAAATCACATCTTCA	NA	False	NA	NA	False	AAGAAA	-1	NA	40624288	40598497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17055.nnic	chr11	-	1980	14	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-39	-6276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	182.482940760607	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGAAATCACATCTTCA	NA	False	NA	NA	False	AAGAAA	-1	NA	40624288	40598497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_40598545_40598841_40599039_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17063.nic	chr11	-	1116	10	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-39	13352	-39	6156	5prime_fragment	FALSE	canonical	3	534	junction_2	71.1602260942008	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGCAAAGCCAGTCACT	NA	False	NA	NA	False	NA	NA	NA	40624288	40605573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17064.nic	chr11	-	786	8	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-39	14515	-39	4993	5prime_fragment	FALSE	canonical	3	547	junction_1	64.2383952832839	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGAAACAGAAAAACTCTT	NA	False	NA	NA	False	AATAGA	-23	NA	40624288	40606736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17066.known	chr11	-	1443	7	FSM	ENSMUSG00000020330.17	ENSMUST00000156399.8	1443	7	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	43.8203402796261	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGTTTTCCATAACT	NA	False	NA	NA	False	NA	NA	NA	40624243	40611729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17067.nic	chr11	-	629	6	ISM	ENSMUSG00000020330.17	ENSMUST00000156399.8	1443	7	-45	949	-39	-949	5prime_fragment	FALSE	canonical	3	653	junction_2	33.2529697921855	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGAGAGAGACAAAGATGA	NA	False	NA	NA	False	NA	NA	NA	40624288	40612678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_17071.known	chr11	+	1577	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624493	40630873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
transcript_17074.known	chr11	+	727	4	FSM	ENSMUSG00000020328.11	ENSMUST00000127382.2	727	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	523.696052644619	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTTCATGGAAAAATATTT	NA	False	NA	-52	True	AAAAAG	-3	NA	40624772	40630377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_40624982_40626844_40626894_40627394_40627472_40629985
transcript_17077.known	chr11	+	577	4	FSM	ENSMUSG00000020328.11	ENSMUST00000141839.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	492.487788906712	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATATTTAATTGTATTT	NA	False	NA	NA	False	NA	NA	NA	40625031	40630310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_40625083_40626844_40626894_40627319_40627472_40629985
transcript_17080.known	chr11	+	806	2	FSM	ENSMUSG00000020328.11	ENSMUST00000127057.2	806	2	0	0	0	0	multi-exon	FALSE	canonical	3	1212	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTACCTAATAGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	40624570	40627239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_40624982_40626844
transcript_17085.known	chr11	-	3512	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	40646138	40639378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
transcript_17099.known	chr11	-	4688	10	FSM	ENSMUSG00000010803.14	ENSMUST00000020707.12	4688	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.82842712474619	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAATACTTGATTCTGTT	NA	False	NA	NA	False	AATAAA	-23	NA	42073757	42021765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_42024618_42026234_42026438_42031075_42031229_42037916_42038061_42044160_42044244_42045635_42045857_42053380_42053449_42066728_42066839_42070386_42070476_42072992
transcript_1710.known	chr1	-	863	5	FSM	ENSMUSG00000025980.15	ENSMUST00000127861.8	863	5	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_4	2615.80354528011	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTATGGGATTTGATAC	4236	False	NA	69	True	AAAAAG	-31	NA	55127402	55122225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
transcript_17102.known	chr11	-	700	6	FSM	ENSMUSG00000020415.17	ENSMUST00000101340.11	700	6	0	0	0	0	multi-exon	FALSE	canonical	3	4089	junction_5	2240.31940579909	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTGAATACTTA	NA	False	NA	-31	True	AATAAA	-15	NA	43317029	43311095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317000
transcript_17103.known	chr11	-	696	6	FSM	ENSMUSG00000020415.17	ENSMUST00000118368.8	696	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	3753.79296179211	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTTCAGATTGTGAATA	NA	False	NA	-35	True	AATAAA	-11	NA	43317044	43311099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317015
transcript_17104.known	chr11	-	634	5	FSM	ENSMUSG00000020415.17	ENSMUST00000020685.10	634	5	0	0	0	0	multi-exon	FALSE	canonical	3	2427	junction_4	3215.28008111269	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGAGTCTCTGGGCAGC	NA	False	NA	NA	False	NA	NA	NA	43317054	43311857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
transcript_17107.nic	chr11	+	2151	17	NIC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	-20	1008	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGGAAAGTTTGACTC	NA	False	NA	22	True	NA	NA	NA	43324550	43337220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
transcript_17108.nic	chr11	+	2793	17	NIC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	-20	-946	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	14	True	AATAAA	-25	NA	43324550	43337862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
transcript_1711.known	chr1	+	774	4	FSM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	0	0	0	0	multi-exon	FALSE	canonical	3	7281	junction_2	538.928154354136	1518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACAGTCTTTGGTAATT	NA	False	NA	13	True	AATAAA	-14	NA	55127290	55130466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228
transcript_17111.known	chr11	+	3625	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGAGTTGTTTGAAGT	NA	False	NA	NA	False	AATAAA	-20	NA	43324585	43338808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
transcript_17114.known	chr11	+	1662	16	FSM	ENSMUSG00000020409.11	ENSMUST00000151880.8	1662	16	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	64.5679659136187	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAGAAGAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	43324570	43336212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185
transcript_17119.nic	chr11	+	1614	15	ISM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	-46	2596	-31	0	5prime_fragment	FALSE	canonical	3	184	junction_1	29.1593090817058	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAGAAGAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	43324539	43336212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185
transcript_17123.nic	chr11	+	1655	15	ISM	ENSMUSG00000020409.11	ENSMUST00000151880.8	1662	16	-20	130	-20	-130	5prime_fragment	FALSE	canonical	3	72	junction_1	66.4258063940668	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGTGTGACCGTCTGC	NA	False	NA	NA	False	AAGAAA	-19	NA	43324550	43336082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010
transcript_17126.nic	chr11	+	1587	14	ISM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	-46	2726	-31	-130	5prime_fragment	FALSE	canonical	3	184	junction_1	27.3285943840132	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGTGTGACCGTCTGC	NA	False	NA	NA	False	AAGAAA	-19	NA	43324539	43336082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010
transcript_17129.known	chr11	+	2672	6	FSM	ENSMUSG00000044707.8	ENSMUST00000050574.7	2672	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	2.71293199325011	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGATTGTGTCTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	43419610	43477824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_43419795_43420181_43420287_43447381_43447596_43470510_43470814_43474006_43474167_43476118
transcript_17133.known	chr11	+	1814	4	FSM	ENSMUSG00000044950.8	ENSMUST00000094294.5	1814	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	38.4013888637725	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATATATAGAAGAAACAA	NA	False	NA	NA	False	AAGAAA	-23	NA	43572884	43611238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_43573444_43595360_43596305_43607856_43607977_43611047
transcript_17136.nic	chr11	+	2841	3	NIC	ENSMUSG00000044950.8	novel	1814	4	NA	NA	-83	-76	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	21	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACTGATTTATTTTTTAA	NA	False	NA	19	True	AATAAA	-20	NA	43572741	43612242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_43573444_43595360_43596305_43611047
transcript_17137.nic	chr11	+	2917	3	NIC	ENSMUSG00000044950.8	novel	1814	4	NA	NA	-83	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	21	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAGAAAAAAAGCCAAA	NA	False	NA	95	True	NA	NA	NA	43572741	43612318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_43573444_43595360_43596305_43611047
transcript_17138.known	chr11	+	3277	2	FSM	ENSMUSG00000044950.8	ENSMUST00000061070.6	3277	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTATTTGTGTGTGTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	43572824	43598018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_43573444_43595360
transcript_17143.known	chr11	-	1438	8	FSM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_5	59.12318513416	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638809	43620835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
transcript_17146.known	chr11	-	501	2	FSM	ENSMUSG00000041278.11	ENSMUST00000147984.2	501	2	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTCTCTCGGCGTCCTCT	NA	False	NA	73	True	NA	NA	NA	43638819	43635844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_43636275_43638748
transcript_17147.known	chr11	-	1965	8	FSM	ENSMUSG00000041278.11	ENSMUST00000109278.8	1965	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	255.299184231732	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTTTCTGTACAACTTG	NA	False	NA	NA	False	NA	NA	NA	43638835	43620338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_43621435_43627241_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
transcript_17148.known	chr11	-	2088	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	0	0	0	0	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATCTGTTTTATAAT	NA	False	NA	NA	False	AATAAA	-18	NA	44361325	44345397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
transcript_17159.known	chr11	+	3570	11	FSM	ENSMUSG00000019189.14	ENSMUST00000019333.10	3570	11	0	0	0	0	multi-exon	TRUE	canonical	3	286	junction_6	37.2538588605261	482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTGTATTCCTGTGATGT	9727	False	NA	12	True	AATAAA	-18	NA	44409790	44456347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_44410102_44415754_44415971_44422102_44422212_44433455_44433548_44439590_44439827_44442470_44442647_44445964_44446106_44448082_44448266_44450798_44450947_44452291_44452649_44454746
transcript_1716.known	chr1	-	528	3	FSM	ENSMUSG00000025980.15	ENSMUST00000144077.3	528	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	3152	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAGTATATCATTGATC	4236	False	NA	NA	False	GGGGCT	-23	NA	55127402	55123691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_55123945_55125924_55126101_55127303
transcript_1717.known	chr1	+	964	2	FSM	ENSMUSG00000073676.5	ENSMUST00000134628.2	964	2	0	0	0	0	multi-exon	FALSE	canonical	3	8585	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAATAAGGCACAGAACT	NA	False	NA	NA	False	GATAAA	-35	NA	55127472	55129074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_55127572_55128209
transcript_17174.known	chr11	+	3452	12	FSM	ENSMUSG00000006169.21	ENSMUST00000109261.11	3452	12	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_10	116.535881042055	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGCCCGCCTCTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	45742790	45801452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_45743020_45774536_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798666_45798872_45799767
transcript_17176.known	chr11	+	3398	12	FSM	ENSMUSG00000006169.21	ENSMUST00000109260.3	3398	12	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_6	52.2164914894813	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGCCCGCCTCTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	45742790	45801452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_45743020_45774536_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798720_45798872_45799767
transcript_17188.known	chr11	-	6453	4	FSM	ENSMUSG00000044847.14	ENSMUST00000129820.8	6453	4	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	23.3666428910958	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTTGCTGCTTGGTCTC	NA	False	NA	-5	True	AATAAA	-15	NA	45835762	45819095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_45824851_45825247_45825332_45828185_45828326_45835288
transcript_17189.known	chr11	-	2126	5	FSM	ENSMUSG00000044847.14	ENSMUST00000062458.6	2126	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	59.4111731915807	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAGAAAAGTAGGT	NA	False	NA	NA	False	AATAAA	-30	NA	45835762	45821906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_45822693_45824208_45824851_45825247_45825332_45828185_45828326_45835288
transcript_17191.known	chr11	-	2250	6	FSM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	12.8	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTCCTACAGAATGAGT	6301	False	NA	NA	False	AATAAA	-26	NA	45846321	45837669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
transcript_17197.known	chr11	-	958	1	FSM	ENSMUSG00000069899.4	ENSMUST00000093169.3	958	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGACAGAGAGAGAGAGAA	1797	False	NA	NA	False	AATAAA	-30	NA	45943138	45942180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_45942200_45943100
transcript_17198.known	chr11	-	784	2	FSM	ENSMUSG00000069899.4	ENSMUST00000154156.2	784	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAGAC	1787	False	NA	NA	False	AATAAA	-16	NA	45943148	45942194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_45942889_45943058
transcript_17203.known	chr11	+	6383	23	FSM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	0	0	0	0	multi-exon	TRUE	canonical	3	430	junction_20	39.4256282802095	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGTTTGGATGGCT	NA	False	NA	15	True	ATTAAA	-20	NA	45946818	46038170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
transcript_17210.nic	chr11	+	2137	12	ISM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	-39	19255	-39	-9560	5prime_fragment	FALSE	canonical	3	440	junction_1	23.2161955439988	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAGAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	45946779	46018915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072
transcript_1722.known	chr1	+	2840	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGTATTCTTGCTTT	NA	False	NA	13	True	CATAAA	-13	NA	55170389	55194058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
transcript_17220.known	chr11	-	6298	31	FSM	ENSMUSG00000020340.17	ENSMUST00000093166.11	6298	31	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_25	27.300895386212	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCATCTTCGTCCTGACT	NA	False	NA	0	True	ATTAAA	-22	NA	46203121	46084681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_46087295_46089817_46089966_46091472_46091712_46098213_46098309_46099114_46099188_46112162_46112294_46113436_46113528_46114888_46115033_46130830_46130919_46133113_46133314_46138385_46138506_46140556_46140666_46143430_46143508_46144773_46144871_46145336_46145494_46148375_46148530_46151626_46151775_46152263_46152431_46156730_46156857_46157536_46157657_46161378_46161497_46163435_46163528_46165464_46165570_46167605_46167735_46168885_46168983_46170778_46170961_46174983_46175086_46176893_46176972_46180458_46180549_46182339_46182480_46203053
transcript_17223.known	chr11	+	331	4	FSM	ENSMUSG00000020397.16	ENSMUST00000140027.8	331	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	221.568650008675	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCATTGAACGGCTTCATC	NA	False	NA	NA	False	NA	NA	NA	46327775	46331591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_46327837_46330632_46330652_46330753_46330803_46331389
transcript_17224.nnic	chr11	+	1322	4	NNC	ENSMUSG00000020397.16	novel	2547	3	NA	NA	11	0	at_least_one_novel_splicesite	TRUE	canonical	3	45	junction_2	200.899643271626	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46327762	46332354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_46328019_46330632_46330652_46330720_46330803_46331389
transcript_17227.known	chr11	+	1193	3	FSM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	179.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46327778	46332354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_46327837_46330632_46330803_46331389
transcript_17229.known	chr11	+	2547	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_1	137	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCCAGGAATTTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	46327800	46333548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_46328019_46330632_46330803_46331389
transcript_17232.known	chr11	+	381	2	FSM	ENSMUSG00000020397.16	ENSMUST00000152119.2	381	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATCTTAATAAGAAGTCC	NA	False	NA	NA	False	NA	NA	NA	46327751	46331685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_46327837_46331389
transcript_17233.known	chr11	+	702	2	FSM	ENSMUSG00000020397.16	ENSMUST00000128940.2	702	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACGAGTCATTGAAATGAT	NA	False	NA	NA	False	NA	NA	NA	46327804	46331877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_46328019_46331389
transcript_17234.nnic	chr11	+	842	2	Genic_Genomic	ENSMUSG00000080776.2	novel	813	1	NA	NA	-22	73	multi-exon	TRUE	canonical	0	0	junction_1	0	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTTCTTGCAGCCATA	NA	False	NA	NA	False	AATAAA	-32	NA	46618622	46619530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr11_+_46618675_46618740
transcript_17235.known	chr11	+	813	1	FSM	ENSMUSG00000080776.2	ENSMUST00000119853.2	813	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCACCCATTGTATTTT	NA	False	NA	NA	False	GATAAA	-26	NA	46618644	46619457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_46618600_46619500
transcript_17238.known	chr11	+	1447	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	0	0	0	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	5223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCCACCTTTCCCCAAG	NA	False	NA	NA	False	AATAAA	-23	NA	48691186	48697261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
transcript_17244.known	chr11	+	1542	7	FSM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	0	0	0	0	multi-exon	FALSE	canonical	3	5433	junction_6	484.72730019626	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	23	True	AATAAA	-15	NA	48691183	48696915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_48691400_48692489_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
transcript_17248.known	chr11	-	3432	6	FSM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	5.01996015920445	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTGGACTCTTTTA	NA	False	NA	-25	True	AATAAA	-18	NA	48708180	48697230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_48698674_48698951_48699080_48699291_48699315_48699876_48700108_48703126_48703223_48706669
transcript_17250.known	chr11	+	4456	2	FSM	ENSMUSG00000020372.16	ENSMUST00000142269.2	4456	2	0	0	0	0	multi-exon	FALSE	canonical	3	6843	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	48691158	48695801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_48694796_48694982
transcript_17251.known	chr11	+	2161	7	FSM	ENSMUSG00000040350.17	ENSMUST00000046903.6	2161	7	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	1.5723301886761	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTTATACAAGAGGC	NA	False	NA	NA	False	NA	NA	NA	48728291	48741382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_48728873_48729663_48729760_48736262_48736494_48738341_48738365_48738851_48738968_48739399_48739436_48740304
transcript_17253.known	chr11	-	1310	1	FSM	ENSMUSG00000078154.4	ENSMUST00000104959.2	1310	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGTGTAAGAAGGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	48717482	48716172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_48716200_48717500
transcript_17254.known	chr11	-	837	1	FSM	ENSMUSG00000078153.4	ENSMUST00000104958.2	837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGAAATAC	1535	False	NA	NA	False	AATAAA	-22	NA	48837017	48836180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_48836200_48837000
transcript_17255.known	chr11	+	3872	4	FSM	ENSMUSG00000046311.14	ENSMUST00000109198.8	3872	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	17.4547032821147	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGGATGGCTTTTTATT	1166	False	NA	NA	False	AATAAA	-12	NA	49094118	49109380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49094366_49103521_49103604_49104416_49104470_49105890
transcript_17258.known	chr11	+	1457	3	FSM	ENSMUSG00000046311.14	ENSMUST00000157023.8	1457	3	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	20.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTTAAAGATTATT	1359	False	NA	NA	False	NA	NA	NA	49094311	49105737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49094366_49103521_49103604_49104416
transcript_17260.known	chr11	+	3151	4	FSM	ENSMUSG00000020346.17	ENSMUST00000167400.8	3151	4	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	35.4432253360529	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAAGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	49135017	49153849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49135167_49136019_49136445_49142376_49142502_49151397
transcript_17267.known	chr11	+	2976	3	FSM	ENSMUSG00000020346.17	ENSMUST00000081794.7	2976	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	11	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGTGTGTGTGTGTCCT	NA	False	NA	NA	False	AATAAA	-24	NA	49135072	49153854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49135167_49136019_49136445_49151397
transcript_17268.known	chr11	+	2729	3	FSM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	25.5	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGTGTCCTAGG	NA	False	NA	NA	False	AATAAA	-27	NA	49141338	49153857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49141483_49142376_49142502_49151397
transcript_17269.nnic	chr11	+	2743	3	NNC	ENSMUSG00000020346.17	novel	2729	3	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	42.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGTGTCCTAGG	NA	False	NA	NA	False	AATAAA	-27	NA	49141475	49153857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_49141634_49142376_49142502_49151397
transcript_1727.known	chr1	+	1816	7	FSM	ENSMUSG00000025979.14	ENSMUST00000159311.8	1816	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	175.833886255055	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCAGCCGGGCGGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	55170389	55193097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_55170519_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
transcript_17274.known	chr11	-	2498	12	FSM	ENSMUSG00000020362.14	ENSMUST00000020624.7	2498	12	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_7	24.0849049121664	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	49603537	49565539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576089_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
transcript_17283.known	chr11	-	348	1	FSM	ENSMUSG00000083061.2	ENSMUST00000118307.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	181	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	49569884	49569536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_49569500_49569900
transcript_17284.known	chr11	-	2241	10	FSM	ENSMUSG00000020362.14	ENSMUST00000109183.3	2241	10	0	0	0	0	multi-exon	TRUE	canonical	3	196	junction_9	12.7714960404453	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAATTGAAAACAGTTGT	NA	False	NA	NA	False	ACTAAA	-13	NA	49593459	49565524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49576180_49577673_49577760_49579991_49580179_49593367
transcript_17288.known	chr11	+	2947	19	FSM	ENSMUSG00000020363.7	ENSMUST00000020629.5	2947	19	0	0	0	0	multi-exon	FALSE	canonical	2	320	junction_10	53.5808204583287	707	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCGACTTGTTTGAATT	NA	False	NA	27	True	AATAAA	-17	NA	49685013	49729440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49709487_49709963_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49717957_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
transcript_17296.known	chr11	+	4677	12	FSM	ENSMUSG00000020366.19	ENSMUST00000178543.8	4677	12	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	121.043192891854	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTACTTGTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	49737577	49777248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49764662_49764735_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
transcript_173.known	SIRV5	+	533	6	FSM	SIRV5A	SIRV507	533	6	0	0	0	0	multi-exon	FALSE	canonical	3	3871	junction_1	2708.37786137754	1292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGTAAGTGGTCAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	1027	3598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483
transcript_1730.known	chr1	-	3677	9	FSM	ENSMUSG00000025978.15	ENSMUST00000027121.15	3677	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.82222121285516	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCATGTTTTGTTTTC	NA	False	NA	NA	False	AATAAA	-41	NA	55265941	55209317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_55211242_55224108_55224188_55233402_55233507_55234674_55234797_55243341_55243552_55245494_55245775_55250308_55250421_55253278_55253463_55265279
transcript_17300.known	chr11	+	4675	12	FSM	ENSMUSG00000020366.19	ENSMUST00000020634.14	4675	12	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_7	40.7615521322656	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTACTTGTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	49737579	49777248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
transcript_17311.known	chr11	+	2216	14	FSM	ENSMUSG00000020374.17	ENSMUST00000093142.12	2216	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.76067052998867	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGCACATGAGTGTCCA	NA	False	NA	NA	False	AGTAAA	-18	NA	49792681	49871042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49792795_49847860_49848044_49848189_49848313_49849426_49849565_49851224_49851426_49851980_49852056_49858163_49858254_49860322_49860426_49860870_49860951_49861032_49861129_49862195_49862292_49866453_49866578_49869234_49869308_49870321
transcript_17313.known	chr11	+	1502	9	FSM	ENSMUSG00000020376.18	ENSMUST00000102776.5	1502	9	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_8	44.3931300991494	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCGCCAGCGTGTGTTT	NA	False	NA	24	True	NA	NA	NA	49916174	49995580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49990072_49990167_49995375
transcript_17314.known	chr11	+	1415	8	FSM	ENSMUSG00000020376.18	ENSMUST00000054684.14	1415	8	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_7	82.1161447249552	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCAGCGTGTGTTTCAGAG	NA	False	NA	29	True	NA	NA	NA	49916172	49995585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49995375
transcript_17315.known	chr11	+	7879	8	FSM	ENSMUSG00000020376.18	ENSMUST00000238748.2	7879	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	98.8135742141716	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTGTCACGTGGAATA	NA	False	NA	NA	False	AATAAA	-17	NA	49916173	50016546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_50009871
transcript_17319.known	chr11	+	5213	22	FSM	ENSMUSG00000036644.16	ENSMUST00000101270.5	5213	22	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_18	41.5114660552835	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTTTGTTTAAAGTACA	NA	False	NA	10	True	AATAAA	-18	NA	50022222	50063612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50054988_50055040_50058995_50059053_50059522_50059630_50061523
transcript_1732.known	chr1	-	882	10	FSM	ENSMUSG00000025977.16	ENSMUST00000087585.10	882	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	6.71831842570265	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTCTGGTTTTCTTCC	NA	False	NA	NA	False	ATTAAA	-19	NA	55402478	55339227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55402457
transcript_17325.known	chr11	+	4407	21	FSM	ENSMUSG00000036644.16	ENSMUST00000093138.13	4407	21	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_18	14.0538251020852	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACTGTGTGCAGTGCTT	NA	False	NA	7	True	AATAAA	-20	NA	50022222	50062857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
transcript_17329.nnic	chr11	+	4363	21	NNC	ENSMUSG00000036644.16	novel	4407	21	NA	NA	-61	0	at_least_one_novel_splicesite	TRUE	canonical	2	9	junction_7	33.4159767177319	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACTGTGTGCAGTGCTT	NA	False	NA	7	True	AATAAA	-20	NA	50022161	50062857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042250_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
transcript_17332.nnic	chr11	+	4411	20	NIC	ENSMUSG00000036644.16	novel	4407	21	NA	NA	-61	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_18	31.7647167454221	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACTGTGTGCAGTGCTT	NA	False	NA	7	True	AATAAA	-20	NA	50022161	50062857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50059522_50059630_50061523
transcript_17355.nic	chr11	+	2230	7	ISM	ENSMUSG00000036644.16	ENSMUST00000093138.13	4407	21	-61	21247	-61	577	5prime_fragment	TRUE	canonical	3	128	junction_6	10.6092203085597	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTTAAAAGGCCCAAAAC	NA	False	NA	NA	False	AATAAA	-16	NA	50022161	50041610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528
transcript_17364.known	chr11	-	2037	8	FSM	ENSMUSG00000015837.16	ENSMUST00000102774.11	2037	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	263.494104027287	1287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTGATCCGTACGAGT	NA	False	NA	-14	True	AATAAA	-22	NA	50101654	50090978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
transcript_17366.known	chr11	-	2673	8	FSM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	0	0	0	0	multi-exon	TRUE	canonical	3	390	junction_1	128.516496201532	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATTGAGTGAGCCATCT	NA	False	NA	NA	False	TATAAA	-11	NA	50101618	50090192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
transcript_17367.known	chr11	+	1142	7	FSM	ENSMUSG00000020381.11	ENSMUST00000020647.10	1142	7	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	8.63616427202108	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCTTGCTGCTACACTC	NA	False	NA	7	True	AATAAA	-17	NA	50065675	50090942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_50065779_50067653_50067714_50073318_50073408_50085034_50085111_50087770_50087920_50088445_50088531_50090362
transcript_1738.known	chr1	-	658	5	FSM	ENSMUSG00000025977.16	ENSMUST00000159398.2	658	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	5.78791845139511	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTGGTGCTTATATAAA	NA	False	NA	NA	False	AATAAA	-12	NA	55402628	55385415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55402457
transcript_17382.known	chr11	+	2429	15	FSM	ENSMUSG00000036620.15	ENSMUST00000041725.14	2429	15	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_14	11.6647471695966	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCTCATAGGTGAAT	NA	False	NA	13	True	AATAAA	-13	NA	50116161	50125930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_50116567_50121506_50121693_50121787_50121929_50122017_50122152_50122565_50122613_50122850_50122965_50123133_50123210_50123390_50123506_50123771_50123903_50124102_50124211_50124290_50124485_50124909_50124989_50125070_50125159_50125236_50125350_50125432
transcript_17383.nic	chr11	+	2722	15	NIC	ENSMUSG00000036620.15	novel	1725	12	NA	NA	-557	0	combination_of_known_junctions	TRUE	canonical	2	5	junction_1	52.5656052675403	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCTCATAGGTGAAT	NA	False	NA	13	True	AATAAA	-13	NA	50101159	50125930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_50101858_50121506_50121693_50121787_50121929_50122017_50122152_50122565_50122613_50122850_50122965_50123133_50123210_50123390_50123506_50123771_50123903_50124102_50124211_50124290_50124485_50124909_50124989_50125070_50125159_50125236_50125350_50125432
transcript_1739.known	chr1	-	2052	4	FSM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	26.1576417557513	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAAAATAGATTCTGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	57416703	57398380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_57399823_57401724_57401923_57414406_57414679_57416563
transcript_17395.nic	chr11	+	2539	14	NIC	ENSMUSG00000036620.15	novel	2429	15	NA	NA	-21	0	intron_retention	FALSE	canonical	3	193	junction_13	11.5957551915146	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCTCATAGGTGAAT	NA	False	NA	13	True	AATAAA	-13	NA	50116140	50125930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_50116567_50121506_50121693_50121787_50122152_50122565_50122613_50122850_50122965_50123133_50123210_50123390_50123506_50123771_50123903_50124102_50124211_50124290_50124485_50124909_50124989_50125070_50125159_50125236_50125350_50125432
transcript_17402.known	chr11	-	5528	5	FSM	ENSMUSG00000050567.17	ENSMUST00000059458.5	5528	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	8.0156097709407	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAAGCATGTTTGACTTC	NA	False	NA	-8	True	AATAAA	-22	NA	50183138	50146460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50149656_50151803_50151901_50154076_50154311_50156421_50157838_50182552
transcript_17406.known	chr11	-	3779	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	0	0	0	0	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8136	False	NA	-54	True	AATAAA	-22	NA	50216500	50185293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
transcript_17412.nnic	chr11	-	3257	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	0	-486	at_least_one_novel_splicesite	FALSE	canonical	3	418	junction_14	996.986871241829	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTGTGGCTTGTA	8136	False	NA	-2	True	AATAAA	-23	NA	50216500	50185779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216355
transcript_17424.nic	chr11	-	1831	13	ISM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	-17	2823	-17	74	5prime_fragment	FALSE	canonical	3	3893	junction_5	194.953466670041	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGAGAAGCTTGGTGA	8119	False	NA	-13	True	NA	NA	NA	50216517	50188116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
transcript_17436.known	chr11	+	2427	15	FSM	ENSMUSG00000007850.17	ENSMUST00000109142.8	2427	15	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_2	159.005711616063	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50267816	50277355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_50267975_50268140_50268268_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
transcript_17440.nic	chr11	+	2236	14	NIC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_11	142.282700508197	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTGTCTGTGCTTTAG	NA	False	NA	NA	False	AATAAA	-18	NA	50268504	50277354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274718_50275470_50275564_50275967_50276018_50276603
transcript_17441.known	chr11	+	2225	14	FSM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	115.462537790991	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTGTCTGTGCTTTAG	NA	False	NA	NA	False	AATAAA	-18	NA	50268545	50277354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
transcript_17445.nnic	chr11	+	2272	14	NNC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	136.035411331369	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTGTCTGTGCTTTAG	NA	False	NA	NA	False	AATAAA	-18	NA	50268530	50277354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_50268630_50269085_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
transcript_17447.nnic	chr11	+	2204	14	NNC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	133.201631207028	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTGTCTGTGCTTTAG	NA	False	NA	NA	False	AATAAA	-18	NA	50268622	50277354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_50268686_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
transcript_17449.known	chr11	+	2126	13	FSM	ENSMUSG00000007850.17	ENSMUST00000077817.8	2126	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_12	133.956356906104	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50268595	50277355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50276603
transcript_17466.nic	chr11	-	2489	18	NIC	ENSMUSG00000020375.10	novel	2688	18	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_17	12.7347167373532	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGCCTCCAGCTTGCT	738	False	NA	0	True	AATAAA	-32	NA	50312885	50280112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50312742
transcript_17467.known	chr11	-	2688	18	FSM	ENSMUSG00000020375.10	ENSMUST00000020643.4	2688	18	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	7.873128931343	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGCCTCCAGCTTGCT	4149	False	NA	0	True	AATAAA	-32	NA	50321952	50280112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50321610
transcript_1748.known	chr1	+	3008	2	FSM	ENSMUSG00000038323.4	ENSMUST00000042734.3	3008	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATTTGGATGTGTTTAT	NA	False	NA	8	True	ATTAAA	-19	NA	57416778	57424582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_57417106_57421901
transcript_17481.known	chr11	+	5079	21	FSM	ENSMUSG00000036545.10	ENSMUST00000142118.3	5079	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.07121426428143	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGGTTTGCTCGGCTGG	NA	False	NA	NA	False	AATAAA	-30	NA	50492910	50689173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_50493127_50494063_50494459_50558817_50558978_50627992_50628196_50647522_50647607_50664043_50664201_50666140_50666247_50666945_50667090_50667448_50667582_50667957_50668072_50670519_50670666_50672531_50672708_50675429_50675564_50676374_50676499_50677412_50677494_50678015_50678183_50679481_50679642_50682629_50682763_50683472_50683681_50686144_50686275_50687265
transcript_17484.known	chr11	-	5325	5	FSM	ENSMUSG00000044807.14	ENSMUST00000109135.9	5325	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	5.87367006223537	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATAAAGTGGTGAATGT	330	False	NA	NA	False	AATAAA	-17	NA	50718517	50701912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50706821_50707945_50708039_50708635_50708763_50717252_50717338_50718405
transcript_17487.nnic	chr11	-	2372	5	NNC	ENSMUSG00000044807.14	novel	5325	5	NA	NA	-22	460	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	8.46684711093805	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTGTGTATGTATGCA	274	False	NA	NA	False	AATAAA	-30	NA	50718573	50704930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_50706821_50707945_50708039_50708635_50708763_50717252_50717338_50718396
transcript_17491.known	chr11	-	2408	5	FSM	ENSMUSG00000044296.11	ENSMUST00000049625.2	2408	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.08972473588517	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACAAGTGCTTGTTTATT	NA	False	NA	NA	False	ACTAAA	-21	NA	50732379	50722861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50724799_50728736_50728833_50729236_50729364_50731352_50731418_50732196
transcript_17492.known	chr11	-	2059	6	FSM	ENSMUSG00000048728.16	ENSMUST00000050595.13	2059	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	5.56417109729742	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTTGTTTCTTTTTTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50778270	50763546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778192
transcript_17493.known	chr11	-	2090	6	FSM	ENSMUSG00000048728.16	ENSMUST00000163301.8	2090	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	3.42928563989645	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTTGTTTCTTTTTTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50778328	50763546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778219
transcript_17494.known	chr11	-	579	4	FSM	ENSMUSG00000048728.16	ENSMUST00000126718.8	579	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5.43650214343336	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGTGAAGTTGCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	50778478	50764987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50765115_50768869_50768933_50777195_50777326_50778219
transcript_17498.known	chr11	-	3069	6	FSM	ENSMUSG00000049321.18	ENSMUST00000116378.8	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	26.1763251813542	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	0	True	NA	NA	NA	50806969	50789538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50792119_50796912_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
transcript_175.known	SIRV5	+	552	2	FSM	SIRV5A	SIRV506	552	2	0	0	0	0	multi-exon	FALSE	canonical	3	11478	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_1150_1987
transcript_1750.known	chr1	-	766	9	FSM	ENSMUSG00000048495.17	ENSMUST00000160837.8	766	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	49.931828526502	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAGATACCTATGGCAAC	NA	False	NA	NA	False	NA	NA	NA	57445602	57427824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57432828_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542
transcript_17501.nic	chr11	-	3064	6	NIC	ENSMUSG00000049321.18	novel	3069	6	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	28.0969749261375	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	0	True	NA	NA	NA	50807005	50789538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_50792119_50796912_50796985_50801262_50801353_50801576_50801704_50803106_50803232_50806935
transcript_17509.known	chr11	-	539	5	FSM	ENSMUSG00000049321.18	ENSMUST00000151027.2	539	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	29.0172362570938	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTTCTTTAATGGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	50806961	50796816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50796985_50801262_50801356_50801576_50801704_50803106_50803232_50806935
transcript_1751.known	chr1	-	1847	8	FSM	ENSMUSG00000048495.17	ENSMUST00000162686.8	1847	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	29.7341966257639	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGTGGAGTGGCCGTCT	NA	False	NA	-15	True	AATAAA	-30	NA	57446260	57427395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440527_57440683_57445542
transcript_17510.known	chr11	-	2782	7	FSM	ENSMUSG00000049321.18	ENSMUST00000109128.8	2782	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	30.6630432642003	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATTGTGCTGGACAGTA	NA	False	NA	NA	False	AATACA	-13	NA	50806992	50789885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50792119_50796432_50796514_50796912_50796985_50801262_50801353_50801576_50801704_50803106_50803229_50806935
transcript_17511.known	chr11	-	2455	5	FSM	ENSMUSG00000020335.14	ENSMUST00000109124.10	2455	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.78535710713571	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAAACTGCATGGTTTTT	5251	False	NA	NA	False	NA	NA	NA	50822460	50812649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_50814668_50819390_50819487_50820203_50820331_50821727_50821813_50822331
transcript_17512.known	chr11	+	2592	5	FSM	ENSMUSG00000020364.15	ENSMUST00000102766.10	2592	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	1.29903810567666	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAGTCCACCTAGTTAT	NA	False	NA	NA	False	AATAAA	-28	NA	50950083	50962189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_50950230_50950898_50950982_50951686_50951814_50952229_50952326_50960049
transcript_17515.known	chr11	-	937	5	FSM	ENSMUSG00000086646.8	ENSMUST00000143209.8	937	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	6.29980158417708	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGATTCTGTATGT	NA	False	NA	NA	False	NA	NA	NA	51111245	51080659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51081139_51089402_51089544_51104871_51105042_51110284_51110381_51111194
transcript_17516.known	chr11	+	1462	6	FSM	ENSMUSG00000061469.4	ENSMUST00000126189.3	1462	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	4.24264068711928	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCGTGCCTCATC	NA	False	NA	NA	False	AAGAAA	-30	NA	51111299	51125880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51111470_51122618_51122914_51123233_51123435_51124291_51124380_51124877_51125184_51125478
transcript_1752.known	chr1	-	1398	8	FSM	ENSMUSG00000048495.17	ENSMUST00000079998.13	1398	8	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	15.7025930524684	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445833	57427398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
transcript_17526.nnic	chr11	+	1976	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	49.8634822681421	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153972	51172591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_17529.nnic	chr11	+	1952	13	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	39.9666527661916	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153905	51172591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_17531.known	chr11	+	1949	13	FSM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	48.5840480221875	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153940	51172591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_17534.nic	chr11	+	1893	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	35.3321898042513	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153905	51172591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_51154097_51157997_51158159_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_17539.known	chr11	+	1627	11	FSM	ENSMUSG00000020385.17	ENSMUST00000109113.8	1627	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	50.5050492525252	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTGATTGAGTATTCT	NA	False	NA	15	True	AGTAAA	-15	NA	51154012	51172593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51154097_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_17543.known	chr11	+	442	2	FSM	ENSMUSG00000020385.17	ENSMUST00000133200.2	442	2	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGGGATTGATAGGAGA	NA	False	NA	NA	False	ACTAAA	-30	NA	51153988	51158331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51154097_51157997
transcript_17545.known	chr11	+	3116	13	FSM	ENSMUSG00000020359.14	ENSMUST00000167797.8	3116	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	4.87054639873415	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCAACTTGGGATCTA	NA	False	NA	NA	False	AATAAA	-16	NA	51475583	51495316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51475707_51476340_51476460_51477387_51477548_51482225_51482301_51482832_51482921_51482995_51483113_51484430_51484514_51484742_51484969_51489102_51489258_51489477_51489568_51490292_51490424_51491395_51491450_51493621
transcript_1755.known	chr1	-	1754	7	FSM	ENSMUSG00000048495.17	ENSMUST00000097732.11	1754	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	15.6178316890235	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445630	57427398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57433251_57435885_57435956_57440546_57440683_57445542
transcript_17552.known	chr11	-	1437	8	FSM	ENSMUSG00000020358.18	ENSMUST00000109103.4	1437	8	0	0	0	0	multi-exon	FALSE	canonical	3	1798	junction_2	581.731405866512	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTGTTCTAGATCAGG	NA	False	NA	92	True	GGGGCT	-16	NA	51497674	51492000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
transcript_17558.known	chr11	-	2370	7	FSM	ENSMUSG00000020358.18	ENSMUST00000074669.10	2370	7	0	0	0	0	multi-exon	FALSE	canonical	3	2171	junction_1	392.745889008826	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTCTTGACCTTGAGT	NA	False	NA	-11	True	AATAAA	-16	NA	51497674	51490926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
transcript_17559.known	chr11	-	2013	7	FSM	ENSMUSG00000020358.18	ENSMUST00000101249.9	2013	7	0	0	0	0	multi-exon	FALSE	canonical	3	1798	junction_1	519.070135488024	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGGTAAATGTGGGATG	NA	False	NA	-17	True	AATAAA	-22	NA	51497674	51491695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
transcript_1756.known	chr1	+	3540	5	FSM	ENSMUSG00000025971.7	ENSMUST00000027114.6	3540	5	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_4	18.5926732881531	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGGGTCATGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	57445486	57457112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_57446382_57449070_57449143_57450881_57451009_57452398_57452547_57454814
transcript_17572.known	chr11	+	1877	2	FSM	ENSMUSG00000020359.14	ENSMUST00000164864.2	1877	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAAGAGGAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	51475633	51478144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51475707_51476340
transcript_17581.known	chr11	-	1946	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGATTGCATGGTCTT	NA	False	NA	-9	True	AATATA	-19	NA	51526723	51514499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
transcript_17597.known	chr11	+	1042	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	0	0	0	0	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	2510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTCAGTTCTAACGGGT	NA	False	NA	NA	False	TATAAA	-3	NA	51510561	51514541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
transcript_17598.known	chr11	+	825	3	FSM	ENSMUSG00000001056.4	ENSMUST00000001083.4	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	5400	junction_2	19.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTGGCAAGTGTGTGG	NA	False	NA	16	True	AGTAAA	-11	NA	51510597	51514256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51510979_51513311_51513418_51513918
transcript_1760.known	chr1	+	3929	14	FSM	ENSMUSG00000038305.16	ENSMUST00000167085.8	3929	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_13	12.6939392890685	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACGTCTGTAGAACCGTT	NA	False	NA	NA	False	AATAAA	-17	NA	57814019	57987553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985226
transcript_1761.nic	chr1	+	2572	14	NIC	ENSMUSG00000038305.16	novel	3929	14	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	8.58855713199065	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTTGCTCTTTCTA	NA	False	NA	NA	False	ATTAAA	-16	NA	57813944	57986124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985229
transcript_17613.known	chr11	-	2367	5	FSM	ENSMUSG00000001053.16	ENSMUST00000001080.16	2367	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	13.2382022948737	1183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAGGAATGTTATTC	NA	False	NA	0	True	AATATA	-32	NA	51541669	51533889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51541504
transcript_17620.known	chr11	+	3426	4	FSM	ENSMUSG00000052563.14	ENSMUST00000064493.6	3426	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.64279609239471	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCGTTCCTGACTACA	NA	False	NA	11	True	AATAAA	-17	NA	51541782	51548507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51542041_51544560_51544699_51544818_51544941_51545599
transcript_17621.known	chr11	-	813	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	0	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	5184	False	NA	-12	True	ATTAAA	-14	NA	51579480	51576212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51576920_51579374
transcript_17622.known	chr11	-	3800	23	FSM	ENSMUSG00000036391.17	ENSMUST00000038210.12	3800	23	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_16	14.7653827896746	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCGCCCCCCCCCCCACT	4000	False	NA	NA	False	NA	NA	NA	51647038	51585461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51586069_51587475_51587580_51591640_51591734_51591984_51592090_51595102_51595241_51597954_51598131_51599761_51599873_51603015_51603190_51604357_51604517_51605951_51606073_51607265_51607473_51608550_51608607_51612641_51612761_51614410_51614524_51617311_51617422_51620278_51620403_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
transcript_17623.known	chr11	-	6581	23	FSM	ENSMUSG00000036391.17	ENSMUST00000109097.9	6581	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_21	10.4921261307612	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAATGTTAGTTATTGA	3593	False	NA	-19	True	AATAAA	-18	NA	51647445	51583090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51586069_51587475_51587580_51591640_51591734_51591984_51592090_51595102_51595241_51597954_51598131_51599761_51599873_51603015_51603190_51604357_51604517_51605951_51606073_51607265_51607473_51608550_51608607_51612641_51612761_51614410_51614524_51617311_51617422_51620278_51620406_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
transcript_17627.known	chr11	-	2094	11	FSM	ENSMUSG00000036391.17	ENSMUST00000109092.8	2094	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	19.6611291639112	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTGTTTTTTTCAG	3780	False	NA	NA	False	AATAAA	-14	NA	51647258	51612516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51612761_51614410_51614524_51617311_51617422_51620278_51620403_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
transcript_17628.known	chr11	-	2104	11	FSM	ENSMUSG00000036391.17	ENSMUST00000064297.5	2104	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	12.9015502944414	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTGTTTTTTTCAG	3773	False	NA	NA	False	AATAAA	-14	NA	51647265	51612516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51612761_51614410_51614524_51617311_51617422_51620278_51620406_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
transcript_17629.known	chr11	-	4273	3	FSM	ENSMUSG00000036391.17	ENSMUST00000154325.2	4273	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	41.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAATAAAAAGGAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	51654461	51631388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51634828_51646903_51647662_51654385
transcript_17634.known	chr11	+	1201	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_5	46.9006041183551	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTTGGGCAGCTGT	3565	False	NA	12	True	AATAAA	-18	NA	51654513	51682752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
transcript_17638.known	chr11	-	6273	12	FSM	ENSMUSG00000020387.16	ENSMUST00000020655.14	6273	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	3.21926021993196	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGCCATGACGTTCTGT	8348	False	NA	-11	True	AATAAA	-17	NA	51748480	51704281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51708528_51709323_51709456_51711905_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432_51737528_51739820_51739879_51748137
transcript_17641.nnic	chr11	+	1331	4	NNC	ENSMUSG00000020392.9	novel	637	4	NA	NA	-35	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	504.667107001129	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTAGGTTCAAGTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	51858452	51868159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_51858785_51860970_51861071_51866726_51867028_51867561
transcript_17643.known	chr11	+	1832	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	0	0	0	0	multi-exon	FALSE	canonical	3	1066	junction_1	20	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAGGTTCAAGTTGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	51858487	51868161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51858785_51860970_51861071_51866726
transcript_17648.known	chr11	-	585	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCCTTCATCGTTGTTG	NA	False	NA	NA	False	AATAGA	-12	NA	51891589	51877493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
transcript_1765.known	chr1	+	4939	9	FSM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.2616813928041	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCTATCTATTTATTTA	5139	False	NA	15	True	ATTAAA	-19	NA	58035129	58065058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517_58057143_58058747_58058902_58063942
transcript_17653.known	chr11	-	1792	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACACCAGCCTCCTAGAGA	NA	False	NA	58	True	NA	NA	NA	51891311	51876323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
transcript_17667.known	chr11	-	516	2	FSM	ENSMUSG00000020390.13	ENSMUST00000124699.2	516	2	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGGTGTGTTGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	51891306	51888396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_51888726_51891119
transcript_17673.known	chr11	+	7102	7	FSM	ENSMUSG00000020349.5	ENSMUST00000020608.3	7102	7	0	0	0	0	multi-exon	TRUE	canonical	3	1809	junction_6	129.264586539908	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATGTGTCGCACAGTC	NA	False	NA	NA	False	AATAAA	-21	NA	51989507	52018605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
transcript_1769.nic	chr1	+	1509	7	ISM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	-23	10099	-23	-10098	5prime_fragment	FALSE	canonical	3	186	junction_3	14.4539498638492	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAGACTGTAGAAAGGAGA	5116	False	NA	NA	False	AAAAAG	-25	NA	58035106	58054959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517
transcript_17691.known	chr11	+	1440	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	0	0	0	0	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTGTTTCTTAATGAA	411	False	NA	34	True	AATAAA	-41	NA	52122835	52137685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
transcript_17692.known	chr11	+	1754	6	FSM	ENSMUSG00000036309.15	ENSMUST00000109072.2	1754	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1986.48266038242	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTGTTTCTTAATGAA	591	False	NA	34	True	AATAAA	-41	NA	52123015	52137685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_52123440_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
transcript_17693.nnic	chr11	-	3185	12	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-103	85	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_7	83.2218979447156	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	-4	True	AATAAA	-26	NA	52174261	52143112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_52144790_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52149679_52149773_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
transcript_17696.nnic	chr11	-	3095	12	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	10	85	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_7	90.6081382147531	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	-4	True	AATAAA	-26	NA	52174148	52143112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_52144813_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52149679_52149773_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
transcript_177.known	SIRV5	+	2473	1	FSM	SIRV5A	SIRV504	2473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1802	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	11133	13606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_11100_13600
transcript_1770.nic	chr1	+	2136	7	ISM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	-23	9472	-23	-9471	5prime_fragment	FALSE	canonical	3	186	junction_3	14.4539498638492	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGACTAAGCAGAAAATAA	5116	False	NA	NA	False	AATAAA	-1	NA	58035106	58055586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517
transcript_17701.nnic	chr11	-	3092	11	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-103	85	at_least_one_novel_splicesite	FALSE	canonical	3	108	junction_1	46.9302674187991	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	-4	True	AATAAA	-26	NA	52174261	52143112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_52144790_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
transcript_17702.known	chr11	-	2059	11	FSM	ENSMUSG00000000782.17	ENSMUST00000109071.3	2059	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	94.0672631684371	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCACAAGTCTAAACAATA	NA	False	NA	NA	False	NA	NA	NA	52174158	52144062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_52144790_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52149679_52149773_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
transcript_17703.nnic	chr11	-	3115	11	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-103	85	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	63.363712012476	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	-4	True	AATAAA	-26	NA	52174261	52143112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_52144813_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
transcript_17705.nnic	chr11	-	2757	10	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	13	85	at_least_one_novel_splicesite	TRUE	canonical	1	7	junction_1	76.6025496787408	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	-4	True	AATAAA	-26	NA	52174145	52143112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_52144644_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
transcript_17707.nnic	chr11	-	3019	10	NIC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-103	85	combination_of_known_splicesites	FALSE	canonical	3	51	junction_1	63.2314970740233	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	-4	True	AATAAA	-26	NA	52174261	52143112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_52144790_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
transcript_17708.nnic	chr11	-	3042	10	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-103	85	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	70.8071629214704	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	-4	True	AATAAA	-26	NA	52174261	52143112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_52144813_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538_52173606_52173754
transcript_17716.known	chr11	+	2022	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	0	0	0	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	3077	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5131	False	NA	30	True	AATAAA	-26	NA	52251686	52280224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
transcript_17731.known	chr11	+	2472	3	FSM	ENSMUSG00000036275.14	ENSMUST00000109057.8	2472	3	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	2	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTCTGTTAGTGTGTT	4558	False	NA	NA	False	AATAAA	-16	NA	52287254	52299555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_52287431_52293872_52294385_52297771
transcript_17733.known	chr11	+	1373	2	FSM	ENSMUSG00000036275.14	ENSMUST00000153855.2	1373	2	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAGAAAAAAAAG	4558	False	NA	NA	False	NA	NA	NA	52287254	52295069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_52287431_52293872
transcript_17734.known	chr11	+	4380	16	FSM	ENSMUSG00000036264.10	ENSMUST00000036796.8	4380	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.573488351136175	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCAGTAGTTGTCTGTA	NA	False	NA	NA	False	ACTAAA	-16	NA	52655460	53079365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_52655710_52664661_52664798_52705451_52705486_52891023_52891270_52959366_52959561_52963219_52963344_53024853_53025021_53039708_53039830_53053361_53053524_53053843_53053979_53055237_53055265_53056580_53056700_53058997_53059148_53067743_53067852_53075462_53075573_53077067
transcript_17747.known	chr11	-	4618	19	FSM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	0	0	0	0	multi-exon	FALSE	canonical	3	1487	junction_13	205.703280251368	1730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTCTTAATTTTCTTA	NA	False	NA	-1	True	AATAAA	-22	NA	53191284	53150640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
transcript_1775.known	chr1	-	2512	7	FSM	ENSMUSG00000054770.17	ENSMUST00000114410.10	2512	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	14.3372087784044	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTGACTACTTACT	NA	False	NA	1	True	AATAAA	-25	NA	58009287	57994406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58009179
transcript_17765.nic	chr11	-	2537	17	ISM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	-149	3132	-149	-66	5prime_fragment	FALSE	canonical	3	1487	junction_11	207.186510178631	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTTGAAGAACTAGGGAA	NA	False	NA	-28	True	AAGAAA	-9	NA	53191433	53153772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
transcript_17767.known	chr11	-	3075	16	FSM	ENSMUSG00000020361.14	ENSMUST00000151854.2	3075	16	0	0	0	0	multi-exon	FALSE	canonical	3	1487	junction_10	212.016183868643	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	53191238	53155073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
transcript_1778.nic	chr1	-	3068	7	NIC	ENSMUSG00000054770.17	novel	2495	7	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	25.1859749331515	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTTTCTGTGACTAC	NA	False	NA	-4	True	AATAAA	-20	NA	58009234	57994411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58008565
transcript_17790.nic	chr11	-	1163	6	ISM	ENSMUSG00000020361.14	ENSMUST00000151854.2	3075	16	-336	19363	-290	-19363	5prime_fragment	FALSE	canonical	3	1626	junction_4	90.0422123228878	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGAAATGTAGTTTTTGT	NA	False	NA	NA	False	TATAAA	-28	NA	53191574	53174436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
transcript_17795.known	chr11	+	1267	4	FSM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	30.2691628926573	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGATGTAAGTTTCAAGT	NA	False	NA	14	True	TATAAA	-27	NA	53215505	53224128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53215569_53218095_53218255_53221513_53221559_53223128
transcript_17797.known	chr11	+	10099	21	FSM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	17.4421185639818	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTGCCTCTGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	53241659	53312657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
transcript_178.known	SIRV5	-	229	1	FSM	SIRV5B	SIRV512	229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATGTTAGACCTTTA	NA	False	NA	NA	False	AATATA	-23	NA	2406	2177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_-_2200_2400
transcript_1780.nic	chr1	-	2530	7	NIC	ENSMUSG00000054770.17	novel	2495	7	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	22.3737197026631	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTTTCTGTGACTAC	NA	False	NA	-4	True	AATAAA	-20	NA	58009332	57994411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004509_58004700_58006655_58006883_58009179
transcript_17805.nic	chr11	+	3170	15	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	-106	13911	-106	-1611	5prime_fragment	FALSE	canonical	3	75	junction_1	16.7443258741459	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAACACAATGCAGATGC	NA	False	NA	NA	False	NA	NA	NA	53241553	53298746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706
transcript_17809.nnic	chr11	+	2510	12	NNC	ENSMUSG00000049470.14	novel	10099	21	NA	NA	-288	418	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	36.5522381763755	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATCAAAATCTTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	53241371	53290870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_53241957_53258901_53258994_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415
transcript_17812.nic	chr11	+	2099	11	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	-106	21924	-106	281	5prime_fragment	FALSE	canonical	3	75	junction_1	14.9749791318719	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGAAGTCAGCTGCTGA	NA	False	NA	NA	False	AAAACA	-11	NA	53241553	53290733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415
transcript_17813.nic	chr11	+	2236	11	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	-106	21787	-106	418	5prime_fragment	FALSE	canonical	3	75	junction_1	14.9749791318719	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATCAAAATCTTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	53241553	53290870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415
transcript_17814.nic	chr11	+	2605	11	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	-106	21418	-106	787	5prime_fragment	FALSE	canonical	3	75	junction_1	14.9749791318719	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGGGAAAAGAAAAATGTTC	NA	False	NA	NA	False	AAGAAA	-14	NA	53241553	53291239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415
transcript_17817.nnic	chr11	+	2275	11	NNC	ENSMUSG00000049470.14	novel	10099	21	NA	NA	-106	418	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_8	27.968732541894	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATCAAAATCTTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	53241553	53290870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287460_53288658_53288697_53289063_53289227_53290415
transcript_17819.nic	chr11	+	2149	10	NIC	ENSMUSG00000049470.14	novel	10099	21	NA	NA	-106	418	combination_of_known_junctions	FALSE	canonical	2	14	junction_4	29.6502243240947	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATCAAAATCTTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	53241553	53290870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_53241957_53259486_53259614_53263104_53263885_53266415_53266461_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415
transcript_17824.known	chr11	-	405	3	FSM	ENSMUSG00000044894.15	ENSMUST00000109021.4	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	885	junction_2	2412.5	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2947	False	NA	-8	True	AATAAA	-17	NA	53321654	53319779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_53319978_53321362_53321530_53321614
transcript_17825.known	chr11	-	1521	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	0	0	0	0	multi-exon	FALSE	canonical	3	5710	junction_1	0	1334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTAATTTTGCTAGTGT	2947	False	NA	NA	False	NA	NA	NA	53321654	53318748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_53319978_53321362
transcript_17826.known	chr11	-	375	2	FSM	ENSMUSG00000044894.15	ENSMUST00000156503.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2943	False	NA	-8	True	AATAAA	-17	NA	53321658	53319779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_53319978_53321481
transcript_17827.known	chr11	+	2630	7	FSM	ENSMUSG00000018387.13	ENSMUST00000018531.12	2630	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCCTGGTGGTGTAGC	NA	False	NA	NA	False	NA	NA	NA	53348056	53358125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53348169_53354049_53355021_53355101_53355158_53356322_53356872_53356950_53357084_53357204_53357478_53357589
transcript_17829.known	chr11	+	4563	10	FSM	ENSMUSG00000018398.19	ENSMUST00000117061.8	4563	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	33.8486099428282	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCATGGTGTCATTTTT	NA	False	NA	17	True	ATTAAA	-19	NA	53410626	53434923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53410867_53422822_53422944_53425259_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53431856
transcript_17831.known	chr11	+	4436	10	FSM	ENSMUSG00000018398.19	ENSMUST00000108987.8	4436	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	33.2766184179422	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATGGTGTCATTTT	NA	False	NA	16	True	ATTAAA	-18	NA	53410572	53434922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53410867_53422822_53422944_53425259_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53432036
transcript_17833.known	chr11	+	2801	10	FSM	ENSMUSG00000018398.19	ENSMUST00000121334.8	2801	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	40.5812703863844	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAATAAAGGAGGCCA	NA	False	NA	-26	True	NA	NA	NA	53410596	53440392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53410867_53422822_53422944_53425259_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53439117
transcript_17836.known	chr11	+	3161	18	FSM	ENSMUSG00000018395.20	ENSMUST00000120613.9	3161	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	25.820514362377	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAATAAAA	919	False	NA	NA	False	NA	NA	NA	53458205	53492794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53481543_53481553_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
transcript_17837.known	chr11	+	2290	17	FSM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	19.4950915296646	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAGAGAACTCCTTAAT	919	False	NA	21	True	AATAAA	-18	NA	53458205	53491932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
transcript_17841.nic	chr11	+	1347	9	ISM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	-10	14210	-10	0	5prime_fragment	FALSE	canonical	3	61	junction_1	8.55496931613434	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAGAAGATGGAGAAAAAA	909	False	NA	NA	False	NA	NA	NA	53458195	53477722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661
transcript_17842.nic	chr11	+	1201	8	ISM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	-10	16745	-10	-2535	5prime_fragment	FALSE	canonical	3	61	junction_1	8.59283042389861	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAGAATCAATGAGGACCC	909	False	NA	NA	False	ATTAAA	-7	NA	53458195	53475187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097
transcript_17844.known	chr11	-	5153	25	FSM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_2	31.5695880379977	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGGCATGGATGTGGGT	NA	False	NA	1	True	NA	NA	NA	53598146	53540345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_53541483_53543060_53543195_53545703_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_17847.nic	chr11	-	3273	19	ISM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	-30	25236	-30	0	5prime_fragment	FALSE	canonical	3	232	junction_8	30.5359533082634	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAGAAAAGATAAATAAAGA	NA	False	NA	NA	False	ACTAAA	-17	NA	53598176	53565581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_17850.nic	chr11	-	3072	17	ISM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	-30	26434	-30	-1198	5prime_fragment	FALSE	canonical	3	232	junction_6	31.2909107210065	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAATTAATCCACAGAAA	NA	False	NA	NA	False	NA	NA	NA	53598176	53566779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_17853.nic	chr11	-	2501	13	ISM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	-30	33683	-30	53	5prime_fragment	FALSE	canonical	3	232	junction_2	28.2669565629789	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCCTGAGTAGTCTTGG	NA	False	NA	NA	False	AAAAAG	-41	NA	53598176	53574028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_17854.nic	chr11	-	2147	12	ISM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	-30	34723	-30	-987	5prime_fragment	FALSE	canonical	3	232	junction_1	29.3798154132903	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGAACAGTTGTCCAGTT	NA	False	NA	NA	False	AATAAA	-30	NA	53598176	53575068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_17858.nic	chr11	-	1929	10	ISM	ENSMUSG00000020380.17	ENSMUST00000128483.8	3085	18	-30	13340	-30	3826	5prime_fragment	FALSE	canonical	3	242	junction_6	29.9485154932079	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGAGTTCTTTCTGTAGT	NA	False	NA	NA	False	NA	NA	NA	53598176	53578921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_17859.nic	chr11	-	1171	6	ISM	ENSMUSG00000020380.17	ENSMUST00000124352.2	2211	12	-54	12036	-30	-3370	5prime_fragment	FALSE	canonical	3	242	junction_2	38.8484233914325	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAAAGGTTTGTGGGTGA	NA	False	NA	NA	False	AAGAAA	-38	NA	53598176	53586117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_17861.nic	chr11	-	619	3	ISM	ENSMUSG00000020380.17	ENSMUST00000124352.2	2211	12	-54	18742	-30	-10076	5prime_fragment	FALSE	canonical	3	253	junction_2	43.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAATTTAAAACCTTGGAA	NA	False	NA	NA	False	AATAAA	-5	NA	53598176	53592823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53592936_53596811_53596896_53597753
transcript_17862.known	chr11	+	2136	10	FSM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	9.82940913537621	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGGCTTTTTATTTA	NA	False	NA	10	True	TATAAA	-17	NA	53660840	53668149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53661105_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
transcript_17864.known	chr11	+	2069	10	FSM	ENSMUSG00000018899.18	ENSMUST00000019043.13	2069	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	21.2573879677132	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGGCTTTTTATTTA	NA	False	NA	10	True	TATAAA	-17	NA	53661320	53668149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53661518_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
transcript_17869.known	chr11	+	515	5	FSM	ENSMUSG00000018899.18	ENSMUST00000133291.3	515	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	26.4054918530218	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAAAACCAAGAGGAAGGT	NA	False	NA	NA	False	NA	NA	NA	53661334	53664783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53661449_53662109_53662202_53663664_53663765_53664481_53664659_53664751
transcript_1787.known	chr1	+	4606	35	FSM	ENSMUSG00000064294.13	ENSMUST00000040999.14	4606	35	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	6.33501009795379	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAACAAAAAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	58152294	58239857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374_58177456_58180509_58180655_58181828_58181922_58185582_58185735_58186352_58186447_58189453_58189564_58191712_58191898_58192179_58192343_58192638_58192732_58197359_58197530_58198063_58198179_58198795_58198919_58202507_58202605_58204995_58205121_58206761_58206896_58208936_58209025_58209815_58209903_58210900_58211093_58211279_58211508_58215632_58215729_58216677_58216807_58218475_58218551_58219764_58219818_58222624_58222740_58225435_58225502_58227493_58227683_58233784_58233953_58239328
transcript_17871.known	chr11	-	3062	10	FSM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	3.67507453523138	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTGAATACAATCTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	53782486	53755367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53774486_53774591_53781972
transcript_17873.nnic	chr11	-	3066	9	NIC	ENSMUSG00000018900.8	novel	3062	10	NA	NA	-108	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_8	10.2339813855606	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTGAATACAATCTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	53782594	53755367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53781972
transcript_17877.nic	chr11	-	2922	8	NIC	ENSMUSG00000018900.8	novel	3062	10	NA	NA	-119	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_7	10.8984177844347	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTGAATACAATCTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	53782605	53755367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53781972
transcript_17879.nic	chr11	-	1874	6	ISM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	-95	6420	-95	2717	5prime_fragment	FALSE	canonical	3	28	junction_3	3.37045990927054	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCTCTGACTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	53782581	53761787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53774486_53774591_53781972
transcript_17883.known	chr11	-	3461	10	FSM	ENSMUSG00000063652.11	ENSMUST00000076493.11	3461	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.87247772737252	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAATAGCAACTGACTA	NA	False	NA	NA	False	AATAAA	-19	NA	53871158	53840790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_53842182_53842532_53842669_53843826_53844010_53845513_53845729_53846810_53846921_53848799_53848927_53850029_53850202_53851108_53851264_53860325_53860430_53870290
transcript_17892.known	chr11	-	1182	7	FSM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	18.9245578254523	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTAGTGTCTGGCCTGA	NA	False	NA	-2	True	AATAAA	-22	NA	53959840	53945753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
transcript_179.known	SIRV5	+	546	2	FSM	SIRV5A	SIRV511	546	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_1144_1987
transcript_17902.known	chr11	+	2263	16	FSM	ENSMUSG00000018906.15	ENSMUST00000093107.12	2263	16	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_12	14.6945190084225	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991749	54022478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
transcript_17903.known	chr11	+	2230	16	FSM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_12	14.0816665680357	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991788	54022478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
transcript_17915.known	chr11	+	610	5	FSM	ENSMUSG00000018906.15	ENSMUST00000135596.9	610	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	6.75925291729789	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTGTCCTTTTGTCAT	NA	False	NA	NA	False	TTTAAA	-16	NA	53991800	54002461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248
transcript_17916.known	chr11	+	260	1	FSM	ENSMUSG00000060068.8	ENSMUST00000121368.2	260	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCAGATTTGGTGGCCA	7253	False	NA	NA	False	AATATA	-2	NA	54090258	54090518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54090300_54090500
transcript_1792.known	chr1	+	1568	8	FSM	ENSMUSG00000064294.13	ENSMUST00000162011.3	1568	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	6.53405521487387	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGTTTTGCCTAAATGT	NA	False	NA	NA	False	NA	NA	NA	58152344	58178281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374
transcript_17920.known	chr11	+	5804	21	FSM	ENSMUSG00000020333.18	ENSMUST00000093106.12	5804	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	11.8346947573649	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTCATAATTTTCTTATA	NA	False	NA	NA	False	AATAAA	-22	NA	54194623	54255582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761_54227840_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_17921.nic	chr11	+	2573	21	NIC	ENSMUSG00000020333.18	novel	5804	21	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_10	9.20584053739798	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATATATTGTACTTAATT	NA	False	NA	5	True	ATTAAA	-19	NA	54194633	54252361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227896_54227975_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_17926.known	chr11	+	5807	21	FSM	ENSMUSG00000020333.18	ENSMUST00000108905.10	5807	21	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	14.4874946074192	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTTCATAATTTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	54195027	54255578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54195160_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761_54227840_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_17927.known	chr11	+	2594	21	FSM	ENSMUSG00000020333.18	ENSMUST00000108904.10	2594	21	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	12.5876924017073	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGTACTTAATTATTT	NA	False	NA	9	True	ATTAAA	-23	NA	54195027	54252365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54195160_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227896_54227975_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_17933.known	chr11	+	1433	14	FSM	ENSMUSG00000020332.8	ENSMUST00000094193.3	1433	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	0.737820234355803	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAACTGTGGGGAAATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	54261477	54317616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54261619_54261709_54261804_54262563_54262646_54264325_54264387_54281292_54281425_54285457_54285578_54286371_54286412_54289281_54289347_54290638_54290716_54296703_54296860_54300475_54300557_54302621_54302742_54308555_54308677_54317473
transcript_17934.known	chr11	+	1489	13	FSM	ENSMUSG00000020332.8	ENSMUST00000143919.2	1489	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	0.74535599249993	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTATATAAAATTAAAAT	NA	False	NA	NA	False	NA	NA	NA	54261477	54317581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54261804_54262563_54262646_54264325_54264387_54281292_54281425_54285457_54285578_54286371_54286412_54289281_54289347_54290638_54290716_54296703_54296860_54300475_54300557_54302621_54302742_54308555_54308677_54317473
transcript_17936.known	chr11	+	6255	18	FSM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_9	15.4083965785252	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGTAATGTTTGTGTTTC	1976	False	NA	27	True	AATAAA	-17	NA	54329024	54409061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54329215_54356912_54357040_54366457_54366593_54371075_54371177_54371435_54371511_54373320_54373413_54378537_54378622_54380094_54380167_54381628_54381765_54384018_54384221_54387427_54387514_54390236_54390384_54391345_54391516_54393084_54394502_54395563_54395733_54400707_54400906_54404195_54404312_54406323
transcript_1794.known	chr1	-	1796	13	FSM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_9	59.1577458063514	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932_58461094_58463078
transcript_17942.nic	chr11	+	1205	10	ISM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	-5	24855	-5	-9325	5prime_fragment	TRUE	canonical	3	95	junction_9	7.70281333886089	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGCAATAGAACAGGTAAGT	1971	False	NA	NA	False	ATTAAA	-3	NA	54329019	54384206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_54329215_54356912_54357040_54366457_54366593_54371075_54371177_54371435_54371511_54373320_54373413_54378537_54378622_54380094_54380167_54381628_54381765_54384018
transcript_17946.known	chr11	+	5864	29	FSM	ENSMUSG00000037533.21	ENSMUST00000101206.10	5864	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	24.4693425430639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTAGGAGCTGGAGAGAT	NA	False	NA	NA	False	ATTAAA	-7	NA	54413715	54587805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585_54525694_54526837_54527042_54530575_54530685_54533536_54533778_54540007_54540166_54548071_54548313_54551628_54552013_54554828_54555041_54559439_54559564_54562480_54562505_54567020_54567242_54570064_54570254_54574717_54574853_54581002_54581232_54582063_54582567_54585095_54585399_54586905
transcript_17947.known	chr11	+	8189	28	FSM	ENSMUSG00000037533.21	ENSMUST00000102743.10	8189	28	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	12.2166092610894	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTGCTTCCTTCCCA	NA	False	NA	13	True	AATAAA	-14	NA	54413672	54590111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585_54525694_54526837_54527042_54530575_54530685_54533536_54533778_54540007_54540166_54548071_54548313_54551628_54552013_54554828_54555041_54559439_54559564_54567020_54567242_54570064_54570254_54574717_54574853_54581002_54581232_54582063_54582567_54585095_54585399_54586905
transcript_17951.nic	chr11	+	2191	16	ISM	ENSMUSG00000037533.21	ENSMUST00000207429.2	5164	29	-169	53556	-70	3924	5prime_fragment	FALSE	canonical	3	58	junction_8	14.6827184888297	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATCGCCATTCAATTCAA	NA	False	NA	NA	False	NA	NA	NA	54413602	54533614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585_54525694_54526837_54527042_54530575_54530685_54533536
transcript_17952.nic	chr11	+	2212	16	ISM	ENSMUSG00000037533.21	ENSMUST00000207429.2	5164	29	-118	53484	-19	3996	5prime_fragment	FALSE	canonical	3	58	junction_8	14.6827184888297	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGCAAATACCGTTTCA	NA	False	NA	NA	False	AAGAAA	-2	NA	54413653	54533686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585_54525694_54526837_54527042_54530575_54530685_54533536
transcript_1796.known	chr1	-	1705	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
transcript_17960.known	chr11	+	1829	13	FSM	ENSMUSG00000037533.21	ENSMUST00000108895.8	1829	13	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	14.7082743152735	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATGCTCATTATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	54413715	54525835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585
transcript_17968.known	chr11	-	3069	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	-12	True	AATAAA	-13	NA	54678501	54608281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
transcript_17971.known	chr11	-	801	3	FSM	ENSMUSG00000052298.13	ENSMUST00000136059.8	801	3	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_1	84	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGCCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54678467	54630811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54631377_54647231_54647386_54678385
transcript_17974.known	chr11	-	3431	5	FSM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_4	23.1557228347551	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGGAGACATTTGAGAGT	NA	False	NA	NA	False	NA	NA	NA	54751738	54729184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54732029_54739404_54739487_54741170_54741242_54744052_54744126_54751377
transcript_17980.known	chr11	+	636	3	FSM	ENSMUSG00000020267.7	ENSMUST00000020504.6	636	3	0	0	0	0	multi-exon	FALSE	canonical	3	4351	junction_2	227.5	2072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATTTGTTACTCTGGAA	NA	False	NA	34	True	AATAAA	-23	NA	54757208	54761327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54757427_54760673_54760779_54761014
transcript_17981.known	chr11	+	580	2	FSM	ENSMUSG00000020267.7	ENSMUST00000117710.2	580	2	0	0	0	0	multi-exon	FALSE	canonical	3	4806	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCATGTCCTTGGGGGTC	NA	False	NA	NA	False	AATGAA	-36	NA	54757306	54761133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54757427_54760673
transcript_17982.known	chr11	+	1594	5	FSM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	9.98436277385793	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGCCTACTTGGAATTT	NA	False	NA	9	True	AGTAAA	-16	NA	54793597	54801203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865_54799966_54800262
transcript_17991.known	chr11	-	2973	19	FSM	ENSMUSG00000020400.18	ENSMUST00000102731.8	2973	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	76.6175365930036	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6840	False	NA	-5	True	CATAAA	-18	NA	54853743	54801612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846_54847005_54853658
transcript_17999.nic	chr11	-	2815	18	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	179	junction_17	40.9030417393305	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3525	False	NA	-5	True	CATAAA	-18	NA	54847005	54801612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
transcript_18.known	ERCC-00053	+	1007	1	FSM	ERCC-00053A	DQ516785	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00053_+_0_1000
transcript_180.known	SIRV5	+	526	3	FSM	SIRV5A	SIRV503	526	3	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_2	5146.5	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTCGCTTGCCCAATTG	NA	False	NA	NA	False	NA	NA	NA	8201	11142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_8586_10858_10992_11133
transcript_1800.known	chr1	-	4865	11	FSM	ENSMUSG00000026034.18	ENSMUST00000156931.8	4865	11	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_10	34.9097407609968	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCTAGTATCCAACATGA	NA	False	NA	NA	False	AATAAA	-23	NA	58463225	58449347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58460468_58460932_58461094_58463078
transcript_18000.nic	chr11	-	3620	18	NIC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	-879	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_17	69.342188459451	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	5961	False	NA	-5	True	CATAAA	-18	NA	54854622	54801612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54853658
transcript_1801.known	chr1	-	1538	11	FSM	ENSMUSG00000026034.18	ENSMUST00000151338.8	1538	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	69.2961759406679	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
transcript_18010.known	chr11	-	2834	18	FSM	ENSMUSG00000020400.18	ENSMUST00000108889.10	2834	18	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	53.1161161918674	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGACTGGCTAATTCT	3582	False	NA	-3	True	CATAAA	-20	NA	54846948	54801610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
transcript_18011.known	chr11	-	2810	18	FSM	ENSMUSG00000020400.18	ENSMUST00000018482.13	2810	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_17	76.4117873477302	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6845	False	NA	-5	True	CATAAA	-18	NA	54853738	54801612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54853658
transcript_18021.nic	chr11	-	2632	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	54.30350903717	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3536	False	NA	-5	True	CATAAA	-18	NA	54846994	54801612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
transcript_18022.nic	chr11	-	2783	17	NIC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	-214	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_16	68.3266225109218	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6626	False	NA	-5	True	CATAAA	-18	NA	54853957	54801612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
transcript_18032.nic	chr11	-	2706	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	64.3996312101242	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3536	False	NA	-5	True	CATAAA	-18	NA	54846994	54801612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
transcript_18033.known	chr11	-	2642	17	FSM	ENSMUSG00000020400.18	ENSMUST00000108886.8	2642	17	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_16	76.2520491527933	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6841	False	NA	-5	True	CATAAA	-18	NA	54853742	54801612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
transcript_18055.known	chr11	-	2489	26	FSM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_6	73.4786608478952	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
transcript_18064.known	chr11	-	2471	25	FSM	ENSMUSG00000018340.14	ENSMUST00000102727.3	2471	25	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	83.6892399827414	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
transcript_1807.known	chr1	-	3191	4	FSM	ENSMUSG00000026034.18	ENSMUST00000129577.8	3191	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	11.7284080571728	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAAAAAAACCAAAAGC	NA	False	NA	NA	False	NA	NA	NA	58463225	58455301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58456543_58458825_58460468_58460932_58461094_58463078
transcript_18074.known	chr11	-	2096	20	FSM	ENSMUSG00000018340.14	ENSMUST00000148298.2	2096	20	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_15	45.6419280439364	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAACAAAAAACAAACCT	NA	False	NA	NA	False	ACTAAA	-35	NA	54924241	54881775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
transcript_18079.known	chr11	+	4127	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTGTTAATTTCTTTTA	NA	False	NA	NA	False	AATAAA	-20	NA	54988940	55003855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
transcript_18082.known	chr11	-	2429	10	FSM	ENSMUSG00000020264.6	ENSMUST00000039305.6	2429	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.628539361054709	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGACTGCCTTCTCTTTCT	2229	False	NA	NA	False	AGTAAA	-38	NA	55075903	55049295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_55050442_55053471_55053642_55055058_55055226_55059655_55059755_55060679_55060899_55065493_55065579_55070150_55070247_55071532_55071622_55072370_55072462_55075636
transcript_18084.known	chr11	-	1772	7	FSM	ENSMUSG00000020264.6	ENSMUST00000125560.2	1772	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.577350269189626	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAAAAAAGA	2229	False	NA	NA	False	NA	NA	NA	55075903	55058829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_55059755_55060679_55060899_55065493_55065579_55070150_55070247_55071532_55071622_55072370_55072462_55075636
transcript_18088.nnic	chr11	+	5257	12	NNC	ENSMUSG00000020261.16	novel	1950	12	NA	NA	-33	-1	intron_retention	TRUE	canonical	0	0	junction_11	18.7880742902829	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTTGCAAACTGTGTCT	NA	False	NA	23	True	AATAAA	-23	NA	55095142	55127155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_55095315_55104755_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192_55127000_55127038
transcript_18089.known	chr11	+	5264	11	FSM	ENSMUSG00000020261.16	ENSMUST00000108872.9	5264	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_5	8.1516869419771	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTGCAAACTGTGTCTT	NA	False	NA	24	True	AATAAA	-24	NA	55095175	55127156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_55095315_55104755_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192
transcript_181.known	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	8315	11866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
transcript_18106.known	chr11	-	1269	10	FSM	ENSMUSG00000018593.14	ENSMUST00000214685.2	1269	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	224.039568815559	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	573	False	NA	NA	False	AATACA	-28	NA	55314009	55286246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55313826
transcript_18108.known	chr11	-	2115	10	FSM	ENSMUSG00000018593.14	ENSMUST00000108858.8	2115	10	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	195.999685058956	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	3858	False	NA	-2	True	AATAAA	-22	NA	55310724	55285325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298103_55300753_55300824_55310613
transcript_18109.known	chr11	-	1366	11	FSM	ENSMUSG00000018593.14	ENSMUST00000213866.2	1366	11	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_10	199.894497172884	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3466	False	NA	NA	False	AATACA	-28	NA	55311116	55286246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55310904
transcript_18112.known	chr11	-	541	4	FSM	ENSMUSG00000018585.10	ENSMUST00000108857.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	2715	junction_3	136.123310110927	936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTCTGGTGTATGTT	NA	False	NA	-7	True	AATAAA	-20	NA	55352065	55337466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_55337611_55341282_55341452_55345706_55345783_55351913
transcript_18114.known	chr11	-	327	3	FSM	ENSMUSG00000018585.10	ENSMUST00000138412.2	327	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	1312.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGAAGTGTCTGGTGTAT	NA	False	NA	-10	True	AATAAA	-17	NA	55352023	55337469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_55337611_55345706_55345783_55351913
transcript_1812.known	chr1	-	3561	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTAGTTTTGTTTTGA	NA	False	NA	0	True	AATAAA	-23	NA	58544268	58501929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
transcript_18129.known	chr11	+	6703	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	0	0	0	0	multi-exon	TRUE	canonical	3	6361	junction_7	586.595613027527	7374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGAATTCTCTTTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	55360510	55395664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
transcript_18176.known	chr11	-	1765	14	FSM	ENSMUSG00000020523.15	ENSMUST00000108850.2	1765	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_12	166.027587356179	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	57409429	57374617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404899_57405115_57409398
transcript_18177.known	chr11	-	2557	14	FSM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	0	0	0	0	multi-exon	TRUE	canonical	3	63	junction_13	118.75144346678	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGTGGTATTTAATAGC	NA	False	NA	NA	False	AATAAA	-21	NA	57409443	57373818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
transcript_18185.nnic	chr11	-	2219	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_13	127.824121030265	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	57409433	57374617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405118_57408930
transcript_18188.nnic	chr11	-	1690	14	NNC	ENSMUSG00000020523.15	novel	1765	14	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_12	161.785488776646	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	57409485	57374617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57405030_57405115_57409398
transcript_18199.nic	chr11	-	1082	10	ISM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	-42	10113	-42	-9314	5prime_fragment	FALSE	canonical	3	63	junction_9	138.929860623408	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATCAGAACATCTCTGGC	NA	False	NA	NA	False	AATACA	-10	NA	57409485	57383931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
transcript_182.known	SIRV6	+	1528	10	FSM	SIRV6A	SIRV612	1528	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
transcript_18203.known	chr11	+	4827	3	FSM	ENSMUSG00000020522.14	ENSMUST00000108849.8	4827	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	35	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTGAATGATGTATATTA	NA	False	NA	19	True	AATAAA	-20	NA	57409489	57424641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_57409539_57418684_57419116_57420294
transcript_18205.known	chr11	+	4839	3	FSM	ENSMUSG00000020522.14	ENSMUST00000020830.14	4839	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	12.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTTGAATGATGTATATT	NA	False	NA	18	True	AATAAA	-19	NA	57409512	57424640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_57409575_57418684_57419116_57420294
transcript_18209.known	chr11	+	4715	12	FSM	ENSMUSG00000020520.15	ENSMUST00000066987.14	4715	12	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_9	7.98034776267445	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTGTCACCTGCCTT	NA	False	NA	NA	False	AATAAA	-33	NA	57536267	57678340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_57536544_57612120_57612224_57616348_57616488_57627803_57627971_57656385_57656572_57660317_57660502_57662293_57662412_57668456_57668565_57671875_57672098_57673031_57673149_57674515_57674666_57675395
transcript_18218.known	chr11	+	1745	3	FSM	ENSMUSG00000020520.15	ENSMUST00000108846.2	1745	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAACGGTGTCTGCCTGG	NA	False	NA	NA	False	AGTAAA	-24	NA	57536290	57617737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_57536544_57612120_57612224_57616348
transcript_18219.known	chr11	-	714	4	FSM	ENSMUSG00000087165.8	ENSMUST00000152790.8	714	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	7.84573486395988	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTGTCTCAGTGATT	NA	False	NA	-3	True	NA	NA	NA	57692243	57686324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_57686621_57686851_57687000_57687137_57687224_57692059
transcript_18220.known	chr11	-	502	3	FSM	ENSMUSG00000087165.8	ENSMUST00000140069.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAACCCCCTGTTGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	57692224	57686431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_57686621_57686851_57687000_57692059
transcript_18221.known	chr11	-	543	3	FSM	ENSMUSG00000087165.8	ENSMUST00000132378.2	543	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAACTCTTCCTTTTGTCC	NA	False	NA	-23	True	NA	NA	NA	57692240	57686344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_57686621_57687137_57687224_57692059
transcript_18223.known	chr11	+	1151	4	FSM	ENSMUSG00000020519.6	ENSMUST00000020826.6	1151	4	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	12.1197726417986	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCGGTCAGGAGGATTA	NA	False	NA	24	True	AATAAA	-24	NA	57692462	57701043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_57693116_57696869_57696993_57698849_57698949_57700767
transcript_18229.nnic	chr11	+	2391	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-1352	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	266.148872291848	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57993626	58009420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_57994039_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_18231.nnic	chr11	+	2085	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-239	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	278.973963341066	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57994739	58009420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_57994846_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_18234.known	chr11	+	2035	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	0	0	0	0	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57994978	58009420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_18237.known	chr11	+	2099	7	FSM	ENSMUSG00000020515.14	ENSMUST00000108843.8	2099	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	277.140558000609	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57995054	58009420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_57995175_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_18238.known	chr11	-	4919	28	FSM	ENSMUSG00000037275.15	ENSMUST00000102711.9	4919	28	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	45.8600782424762	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059365	58012115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028590_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
transcript_18239.known	chr11	-	4922	28	FSM	ENSMUSG00000037275.15	ENSMUST00000035604.13	4922	28	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	43.3607067704434	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059365	58012115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
transcript_18240.nic	chr11	-	4922	28	NIC	ENSMUSG00000037275.15	novel	4919	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	119	junction_10	38.087942423091	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTCTCGTTCTGTGG	NA	False	NA	-34	True	TATAAA	-12	NA	58059365	58012115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_58012611_58013107_58013205_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028590_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
transcript_18241.known	chr11	-	6213	28	FSM	ENSMUSG00000037275.15	ENSMUST00000172035.8	6213	28	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_10	34.9266525198369	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCTCTTTTCTTTATCA	NA	False	NA	0	True	ATTAAA	-21	NA	58059365	58010827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58012611_58013107_58013205_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58030320_58030435_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
transcript_18244.nic	chr11	-	2324	16	ISM	ENSMUSG00000037275.15	ENSMUST00000035604.13	4922	28	0	20449	0	-4816	5prime_fragment	FALSE	canonical	3	180	junction_9	28.5504621484292	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACCTTGCGACTGCCTGT	NA	False	NA	NA	False	AAAAAG	-10	NA	58059365	58032564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
transcript_18246.known	chr11	+	722	7	FSM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	0	0	0	0	multi-exon	TRUE	canonical	3	1080	junction_1	114.661821603066	398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTTTCATTGAATTATT	1481	False	NA	12	True	AGTAAA	-15	NA	58062486	58070391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
transcript_18247.known	chr11	+	2022	3	FSM	ENSMUSG00000078853.9	ENSMUST00000035266.11	2022	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGTTCTCTTCTTATCT	NA	False	NA	NA	False	AATAAA	-41	NA	58090381	58098417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58090606_58092293_58092544_58096869
transcript_18248.known	chr11	+	3459	2	FSM	ENSMUSG00000069874.8	ENSMUST00000108836.2	3459	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGTATTATTTTTGTTC	1594	False	NA	NA	False	AATAAA	-23	NA	58105853	58113605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58105997_58110289
transcript_18249.known	chr11	+	3470	2	FSM	ENSMUSG00000069874.8	ENSMUST00000058704.9	3470	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATAAATAGATGTATTAT	NA	False	NA	NA	False	AATAAA	-15	NA	58090443	58113597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58090606_58110289
transcript_18250.known	chr11	+	3528	3	FSM	ENSMUSG00000069874.8	ENSMUST00000209079.2	3528	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATTATTTTTGTTCTTT	1574	False	NA	NA	False	AATAAA	-26	NA	58105833	58113608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58105997_58107781_58107828_58110289
transcript_18251.known	chr11	+	1887	12	FSM	ENSMUSG00000037243.18	ENSMUST00000153510.9	1887	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	49.3946830209872	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7673	False	NA	14	True	AATAAA	-21	NA	58197894	58205439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_18255.nic	chr11	+	2208	11	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	-33	0	intron_retention	FALSE	canonical	3	39	junction_1	35.6712769606023	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7640	False	NA	14	True	AATAAA	-21	NA	58197861	58205439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_18259.nic	chr11	+	2291	10	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	-33	0	intron_retention	FALSE	canonical	3	39	junction_1	36.8269225190243	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7640	False	NA	14	True	AATAAA	-21	NA	58197861	58205439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_18271.nic	chr11	+	1126	2	ISM	ENSMUSG00000037243.18	ENSMUST00000153510.9	1887	12	-33	6135	-33	-6135	intron_retention	FALSE	canonical	3	39	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAATGTCTGGGCATGGAG	7640	False	NA	NA	False	AAAAAG	-7	NA	58197861	58199304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_58198083_58198399
transcript_18272.known	chr11	+	1860	12	FSM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	44.8549544883144	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATAAGAATCTGGGAGT	7776	False	NA	28	True	AATAAA	-35	NA	58197997	58205453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_18274.known	chr11	-	2862	4	FSM	ENSMUSG00000049755.15	ENSMUST00000057836.12	2862	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	10.1434160364686	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGTGGTTTCAATAGTGT	638	False	NA	NA	False	NA	NA	NA	58214149	58205949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58208361_58210149_58210417_58213425_58213556_58214095
transcript_18276.known	chr11	-	423	3	FSM	ENSMUSG00000049755.15	ENSMUST00000130217.2	423	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAGTAAAGTATTCAA	647	False	NA	NA	False	AATAAA	-16	NA	58214140	58210563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58210781_58213394_58213556_58214095
transcript_18277.known	chr11	-	3125	1	FSM	ENSMUSG00000049755.15	ENSMUST00000185661.2	3125	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAACAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	58221165	58218040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58218000_58221200
transcript_18278.known	chr11	-	2619	1	FSM	ENSMUSG00000049755.15	ENSMUST00000065533.3	2619	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAGAGAAAGAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	58221165	58218546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58218500_58221200
transcript_18284.known	chr11	+	2977	7	FSM	ENSMUSG00000013646.18	ENSMUST00000073128.7	2977	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	22.1716786313832	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTTTACTGTCTGTTAA	469	False	NA	16	True	AATAAA	-17	NA	58221575	58238551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58221619_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
transcript_18285.nnic	chr11	+	3107	7	NNC	ENSMUSG00000013646.18	novel	3016	7	NA	NA	22	0	intron_retention	FALSE	canonical	1	2	junction_1	49.7172561145077	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGATGTTTACTGTCT	491	False	NA	11	True	AATAAA	-12	NA	58221597	58238546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_58221776_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
transcript_18287.known	chr11	-	561	4	FSM	ENSMUSG00000049154.13	ENSMUST00000239007.2	561	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	3.29983164553722	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAGACTATGTCACAGA	NA	False	NA	NA	False	AATAAA	-21	NA	58692786	58683628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58683826_58687380_58687485_58689461_58689522_58692586
transcript_18288.known	chr11	+	4100	5	FSM	ENSMUSG00000072915.4	ENSMUST00000139337.3	4100	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	6.04152298679729	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTCCGAGTGGGCCTCT	NA	False	NA	NA	False	AATAAA	-22	NA	58737983	58752782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58738086_58739471_58739529_58745085_58745213_58746886_58746980_58749061
transcript_18290.known	chr11	+	3866	5	FSM	ENSMUSG00000020491.16	ENSMUST00000073924.10	3866	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	8.74642784226795	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTGTTAAAAGTGCTA	NA	False	NA	NA	False	ATTAAA	-16	NA	58758041	58774114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58758136_58759640_58759833_58767519_58767647_58769601_58769695_58770754
transcript_18294.known	chr11	-	3890	5	FSM	ENSMUSG00000037001.11	ENSMUST00000102703.2	3890	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	4.94974746830583	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACACCATTTTCTCTTAT	7184	False	NA	NA	False	AATAAA	-19	NA	58795051	58778978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58782373_58783787_58783881_58791390_58791518_58793568_58793734_58794940
transcript_18296.known	chr11	-	1949	4	FSM	ENSMUSG00000020496.11	ENSMUST00000094151.6	1949	4	0	0	0	0	multi-exon	TRUE	canonical	3	1063	junction_2	80.5495016882303	3074	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTTCCATACCTCCT	NA	False	NA	-16	True	AATAAA	-17	NA	58829742	58823113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_58824223_58824832_58825058_58827965_58828059_58829220
transcript_1830.known	chr1	-	1363	7	FSM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	68.4505092911822	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484588	58470152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
transcript_1831.known	chr1	-	1033	7	FSM	ENSMUSG00000026035.16	ENSMUST00000114348.8	1033	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	35.853482707015	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484593	58470152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
transcript_18313.known	chr11	+	2301	7	FSM	ENSMUSG00000020455.17	ENSMUST00000108810.10	2301	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	38.6566078870525	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGCTTATCCTGTG	1688	False	NA	15	True	AATAAA	-15	NA	58868940	58882284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58878458_58878507_58879550_58879574_58879654_58879756_58881012
transcript_18317.known	chr11	+	2251	6	FSM	ENSMUSG00000020455.17	ENSMUST00000093061.7	2251	6	0	0	0	0	multi-exon	FALSE	canonical	2	58	junction_2	16.6781293915115	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCTCTGCTTATCCTGT	1689	False	NA	14	True	AATAAA	-14	NA	58868941	58882283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550_58879574_58879654_58879756_58881012
transcript_1832.known	chr1	-	896	7	FSM	ENSMUSG00000026035.16	ENSMUST00000081677.12	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	63.3151289626386	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484645	58470155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484490
transcript_18323.known	chr11	+	3522	5	FSM	ENSMUSG00000020455.17	ENSMUST00000108809.8	3522	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	36.1481327318577	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTCTCTGCTTATCCT	1666	False	NA	12	True	AATAAA	-12	NA	58868918	58882281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550_58879574_58879661
transcript_18328.known	chr11	-	4021	3	FSM	ENSMUSG00000049287.6	ENSMUST00000054523.6	4021	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.5	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGAGTTGTTTGTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	59054565	59046194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59049486_59049663_59050005_59054176
transcript_18335.known	chr11	-	1078	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_7	90.3745042609262	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1470	False	NA	-20	True	AATAAA	-13	NA	59082778	59074700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
transcript_18336.nnic	chr11	-	1031	8	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	-130	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	290.128261572818	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1340	False	NA	-20	True	AATAAA	-13	NA	59082908	59074700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082753
transcript_1834.nic	chr1	-	821	7	NIC	ENSMUSG00000026035.16	novel	896	7	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	60.3869467131212	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484648	58470155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
transcript_18350.known	chr11	+	718	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	235.799820940465	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093314	59096714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
transcript_18352.known	chr11	+	940	4	FSM	ENSMUSG00000036860.15	ENSMUST00000045697.12	940	4	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	41.3467720088952	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACAGCTTCAGACCTCT	NA	False	NA	1	True	NA	NA	NA	59093317	59096960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59093486_59094997_59095082_59095381_59095584_59096474
transcript_18355.known	chr11	+	729	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108784.4	729	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	265.902655538117	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093363	59096714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59093546_59094997_59095082_59095360_59095584_59096474
transcript_18359.nnic	chr11	+	613	3	NIC	ENSMUSG00000036860.15	novel	718	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	65	junction_1	260	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093314	59096714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_59093486_59095381_59095584_59096474
transcript_18362.known	chr11	+	792	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108785.2	792	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	266.007936389541	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACTTTTGGGGTTGACT	NA	False	NA	12	True	ATTAAA	-26	NA	59093330	59096828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59093486_59095000_59095082_59095381_59095584_59096474
transcript_18363.known	chr11	+	1285	7	FSM	ENSMUSG00000020441.7	ENSMUST00000020719.7	1285	7	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_6	17.464249196573	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTATATTATCTCGCT	NA	False	NA	7	True	AGTAAA	-15	NA	59099146	59101564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100027_59100133_59100220_59100798_59100931_59101052
transcript_18374.known	chr11	-	1991	5	FSM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	968.523876835259	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGCTTGTGTGTCAGTGC	1955	False	NA	-2	True	AATAAA	-17	NA	59118988	59102237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118701
transcript_18375.known	chr11	-	1800	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	0	0	0	0	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	1348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1847	False	NA	-4	True	AATAAA	-15	NA	59119096	59102239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
transcript_18386.known	chr11	-	2761	4	FSM	ENSMUSG00000009900.8	ENSMUST00000010044.8	2761	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGGTTTGTTCTAGAT	6174	False	NA	NA	False	AGTAAA	-19	NA	59181578	59138858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59140936_59147105_59147372_59165965_59166208_59181402
transcript_18387.known	chr11	+	3318	4	FSM	ENSMUSG00000000126.12	ENSMUST00000108783.4	3318	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.69967317119759	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCGATGTTTTCACTGA	5618	False	NA	NA	False	AATAAA	-25	NA	59197755	59224378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59197894_59218389_59218647_59219327_59219591_59221718
transcript_18388.known	chr11	-	1243	5	FSM	ENSMUSG00000049291.7	ENSMUST00000061481.7	1243	5	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_3	3.57071421427143	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATGCCTCAGAGCTC	NA	False	NA	NA	False	ATTAAA	-9	NA	59266483	59263494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59263997_59264251_59264395_59264991_59265264_59265982_59266146_59266320
transcript_18389.known	chr11	+	659	3	FSM	ENSMUSG00000086910.2	ENSMUST00000133698.2	659	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTGGGAAAAATGCCTCC	NA	False	NA	NA	False	NA	NA	NA	59266286	59270731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59266712_59269251_59269320_59270565
transcript_18394.nnic	chr11	+	3502	7	NNC	ENSMUSG00000036819.15	novel	4359	6	NA	NA	4	1324	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	17.591822595235	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	9485	False	NA	17	True	NA	NA	NA	59340874	59350717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_59341339_59341500_59341667_59344336_59344472_59344703_59344886_59345758_59345906_59346132_59347021_59349197
transcript_18398.known	chr11	+	4351	6	FSM	ENSMUSG00000036819.15	ENSMUST00000108777.10	4351	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	13.8506317545446	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTAACCCCAGCACTTGG	9481	False	NA	7	True	NA	NA	NA	59340870	59349299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344617_59344886_59345758_59345906_59346132
transcript_1840.known	chr1	-	1175	6	FSM	ENSMUSG00000026035.16	ENSMUST00000114345.9	1175	6	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	38.958439393795	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTACCAGGACATATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	58484528	58472945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
transcript_18402.known	chr11	+	4315	6	FSM	ENSMUSG00000036819.15	ENSMUST00000045279.13	4315	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	19.0326036053925	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTAACCCCAGCACTTGG	9481	False	NA	7	True	NA	NA	NA	59340870	59349299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344653_59344886_59345758_59345906_59346132
transcript_18403.known	chr11	+	4359	6	FSM	ENSMUSG00000036819.15	ENSMUST00000147163.8	4359	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	10.3614670775909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTATGTGGTTTTAACG	9481	False	NA	101	True	NA	NA	NA	59340870	59349393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344703_59344886_59345758_59345906_59346132
transcript_18407.nic	chr11	-	2458	6	NIC	ENSMUSG00000009894.16	novel	1896	5	NA	NA	-504	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_5	132.4259793243	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGGGTCTATAACAGCCA	NA	False	NA	3	True	NA	NA	NA	59341337	59297959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59333617_59333668_59340740
transcript_1841.known	chr1	-	391	6	FSM	ENSMUSG00000026035.16	ENSMUST00000190048.7	391	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	79.4883639283134	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCCCAAATACCAATGGAT	NA	False	NA	-87	True	NA	NA	NA	58484598	58473573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484530
transcript_18412.known	chr11	-	1896	5	FSM	ENSMUSG00000009894.16	ENSMUST00000010038.10	1896	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_2	15.4110350074224	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGGGTCTATAACAGCCA	NA	False	NA	3	True	NA	NA	NA	59340825	59297959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59340740
transcript_18414.known	chr11	-	3412	4	FSM	ENSMUSG00000054519.9	ENSMUST00000057799.8	3412	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	2.86744175568088	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAGAAGAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	59363300	59352022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59355113_59355837_59355899_59356276_59356404_59363166
transcript_18419.nic	chr11	-	3976	10	NIC	ENSMUSG00000020472.15	novel	4064	10	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	43.6750062717741	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	59397429	59376345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394590_59394973_59395081_59396653_59396789_59396989
transcript_1842.known	chr1	-	392	6	FSM	ENSMUSG00000026035.16	ENSMUST00000185990.2	392	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	65.3066612222674	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGGCCCAAATACCAAT	NA	False	NA	-91	True	NA	NA	NA	58484641	58473577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
transcript_18420.known	chr11	-	4064	10	FSM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	26.5236907846458	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	59397470	59376345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
transcript_18423.known	chr11	-	3771	10	FSM	ENSMUSG00000020472.15	ENSMUST00000101150.9	3771	10	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_6	45.5777723603659	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	59397470	59376345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394502_59394637_59394973_59395081_59396653_59396789_59396989
transcript_18424.known	chr11	+	1414	4	FSM	ENSMUSG00000072893.13	ENSMUST00000137442.8	1414	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	2.94392028877595	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTCATTGTGCAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	59396978	59400929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59397713_59398016_59398139_59398656_59398765_59400479
transcript_18426.known	chr11	+	1883	5	FSM	ENSMUSG00000072893.13	ENSMUST00000145533.8	1883	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	3.08220700148449	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTCTATTGCATTTAT	NA	False	NA	NA	False	NA	NA	NA	59396510	59401899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59397713_59398016_59398139_59398656_59398765_59400479_59400577_59401545
transcript_18428.known	chr11	+	8766	24	FSM	ENSMUSG00000005417.18	ENSMUST00000116371.8	8766	24	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_2	48.3490381455828	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGCATGCATATGGCTG	3585	False	NA	NA	False	AATAAA	-16	NA	59553332	59671680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59553775_59586951_59587030_59587783_59587850_59618377_59618530_59622333_59622419_59626655_59626891_59627897_59628055_59631945_59632088_59632816_59632925_59634596_59634654_59635577_59635647_59639372_59639463_59640344_59640455_59643315_59643887_59645818_59645936_59655205_59655354_59656233_59656352_59657553_59657714_59658780_59658901_59660038_59660126_59660709_59660873_59662442_59662529_59662977_59663044_59666341
transcript_18429.known	chr11	+	4021	24	FSM	ENSMUSG00000005417.18	ENSMUST00000108751.8	4021	24	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_5	102.676193716673	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGCCCCTCTCATTCCT	3585	False	NA	17	True	ATTAAA	-14	NA	59553332	59667049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59553775_59586951_59587030_59587783_59587850_59618377_59618530_59622333_59622419_59626769_59626891_59627897_59628055_59631945_59632088_59632816_59632925_59634596_59634654_59635577_59635647_59639372_59639463_59640344_59640455_59643315_59643887_59645818_59645936_59655205_59655354_59656233_59656352_59657553_59657714_59658780_59658901_59660038_59660126_59660709_59660873_59662442_59662529_59662977_59663044_59666341
transcript_18430.known	chr11	-	948	2	FSM	ENSMUSG00000043648.8	ENSMUST00000125307.2	948	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACGCCTGCAGCTTGCC	NA	False	NA	NA	False	NA	NA	NA	59678468	59675528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59676052_59678043
transcript_18431.known	chr11	-	1753	2	FSM	ENSMUSG00000043648.8	ENSMUST00000051493.8	1753	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGCATGTCTACCTTA	NA	False	NA	-13	True	AATAAA	-16	NA	59678471	59674722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59676052_59678047
transcript_18438.nic	chr11	-	3205	14	NIC	ENSMUSG00000032633.13	novel	3437	13	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_12	92.1306635794925	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAGAATGTTGAAACACAA	NA	False	NA	-45	True	NA	NA	NA	59700871	59682615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700190_59700312_59700485
transcript_18448.known	chr11	-	2768	13	FSM	ENSMUSG00000032633.13	ENSMUST00000091246.11	2768	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	78.0128194593683	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAGAATGTTGAAACACAA	NA	False	NA	-45	True	NA	NA	NA	59700414	59682615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700344
transcript_18449.known	chr11	-	3437	13	FSM	ENSMUSG00000032633.13	ENSMUST00000102697.10	3437	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_12	22.951034835057	776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGAGGTTGGTACCAG	NA	False	NA	NA	False	NA	NA	NA	59700842	59682233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700485
transcript_18450.nic	chr11	-	3038	13	NIC	ENSMUSG00000032633.13	novel	2768	13	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	74.517848346703	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAGAATGTTGAAACACAA	NA	False	NA	-45	True	NA	NA	NA	59700865	59682615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700525
transcript_18452.nic	chr11	-	3389	13	NIC	ENSMUSG00000032633.13	novel	3567	13	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	67.9384934252217	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAGAATGTTGAAACACAA	NA	False	NA	-45	True	NA	NA	NA	59700865	59682615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686402_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700485
transcript_18453.known	chr11	-	3567	13	FSM	ENSMUSG00000032633.13	ENSMUST00000148151.8	3567	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_12	94.3328548279972	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTGCCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	59700750	59682282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686402_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700525
transcript_18479.known	chr11	-	1646	12	FSM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_5	45.2577558304642	602	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATGTGTGTTCTCTCA	NA	False	NA	-4	True	ATTAAA	-27	NA	59730664	59708620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
transcript_1848.known	chr1	-	370	4	FSM	ENSMUSG00000026037.15	ENSMUST00000191206.2	370	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	199.544481256686	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCCCAGAAAGTAATAAAG	NA	False	NA	NA	False	ATTAAA	-27	NA	58544114	58539504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58539544_58540481_58540586_58541000_58541044_58543930
transcript_1849.known	chr1	+	2098	6	FSM	ENSMUSG00000026036.18	ENSMUST00000171597.2	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_2	29.7119504576862	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGGACACACTGTAT	NA	False	NA	13	True	NA	NA	NA	58486789	58501425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
transcript_18496.known	chr11	+	1316	5	FSM	ENSMUSG00000032615.15	ENSMUST00000149076.8	1316	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	25.0337272494529	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	2645	False	NA	6	True	AATAAA	-16	NA	59730272	59767359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59730583_59743616_59743718_59751575_59751637_59765378_59765494_59766630
transcript_18497.known	chr11	+	1306	5	FSM	ENSMUSG00000032615.15	ENSMUST00000102695.4	1306	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9.12414379544733	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	1719	False	NA	6	True	AATAAA	-16	NA	59738898	59767359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59739199_59743616_59743718_59751575_59751637_59765378_59765494_59766630
transcript_18498.known	chr11	+	1387	5	FSM	ENSMUSG00000032615.15	ENSMUST00000137695.2	1387	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	25.8976350271603	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	1750	False	NA	6	True	AATAAA	-16	NA	59738929	59767359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59739311_59743616_59743718_59751575_59751637_59765378_59765494_59766630
transcript_18502.known	chr11	+	771	2	FSM	ENSMUSG00000087249.2	ENSMUST00000151825.2	771	2	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGCATCTGTGCAAGAGT	NA	False	NA	NA	False	NA	NA	NA	59700905	59709317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59701088_59708728
transcript_18503.known	chr11	-	527	2	FSM	ENSMUSG00000085260.8	ENSMUST00000146334.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAAGGTATATCTTAG	9278	False	NA	NA	False	ATTAAA	-25	NA	59838968	59837714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59837923_59838649
transcript_18504.known	chr11	+	1920	2	FSM	ENSMUSG00000061650.7	ENSMUST00000081980.7	1920	2	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	0	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTTGCCTGTTGGC	NA	False	NA	10	True	ATTAAA	-21	NA	59839031	59853031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59839305_59851384
transcript_18507.known	chr11	-	1611	2	FSM	ENSMUSG00000049892.8	ENSMUST00000062405.8	1611	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCTTTGCTTTTAGGTT	NA	False	NA	NA	False	AATAAA	-20	NA	59855770	59854006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59855193_59855345
transcript_18509.known	chr11	-	961	7	FSM	ENSMUSG00000000301.17	ENSMUST00000102693.9	961	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	8.67307455417179	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59937307	59861439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937165
transcript_1851.known	chr1	-	8685	12	FSM	ENSMUSG00000038174.15	ENSMUST00000161600.8	8685	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	5.70486235990445	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCTGAGTTGATTGTAT	NA	False	NA	1	True	TATAAA	-30	NA	58625482	58561964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58569419_58574548_58574709_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58605015_58605114_58625370
transcript_18519.nic	chr11	-	3788	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-19	-508	combination_of_known_junctions	FALSE	canonical	3	238	junction_18	63.0911793643156	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTTTTGTTTATCTGG	5224	False	NA	-4	True	ATTAAA	-19	NA	60101310	60090422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60101161
transcript_18520.nic	chr11	-	3982	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-284	-508	combination_of_known_junctions	FALSE	canonical	3	37	junction_18	97.6774106086452	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTTTTGTTTATCTGG	1540	False	NA	-4	True	ATTAAA	-19	NA	60113691	60090422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60113348
transcript_18535.known	chr11	+	1823	5	FSM	ENSMUSG00000062115.16	ENSMUST00000149770.8	1823	5	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	6.75925291729789	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCGGCCTGTGGATGCC	NA	False	NA	NA	False	AATAAA	-22	NA	59995838	60090023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_59996221_60031066_60031197_60084764_60084859_60088614_60088665_60088856
transcript_18539.known	chr11	+	6921	5	FSM	ENSMUSG00000062115.16	ENSMUST00000102688.2	6921	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	3.69966214673719	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCGGCCTGTGGATGCC	NA	False	NA	NA	False	AATAAA	-22	NA	60066704	60090023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60066788_60075921_60081449_60084764_60084859_60088614_60088665_60088856
transcript_18540.known	chr11	-	4299	19	FSM	ENSMUSG00000020538.16	ENSMUST00000020846.8	4299	19	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_18	63.0911793643156	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACACAATCTTCAGTGT	3801	False	NA	NA	False	AATAAA	-21	NA	60111430	60089914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60111278
transcript_18541.known	chr11	-	4999	15	FSM	ENSMUSG00000000538.19	ENSMUST00000102683.11	4999	15	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_8	7.39553091745416	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTGTGATGTCTGA	NA	False	NA	-1	True	AATAAA	-14	NA	60243731	60117540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60121068_60121926_60121964_60123723_60123784_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
transcript_18544.known	chr11	-	2151	13	FSM	ENSMUSG00000000538.19	ENSMUST00000064019.15	2151	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	13.4935684268057	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGATAGTCATGTGTGTA	NA	False	NA	NA	False	AATAAA	-13	NA	60243731	60131395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60132172_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
transcript_18545.known	chr11	-	2256	12	FSM	ENSMUSG00000000538.19	ENSMUST00000102682.5	2256	12	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	7.4022556312081	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAATTAAAGAACTAGG	NA	False	NA	NA	False	NA	NA	NA	60243731	60131762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
transcript_18547.known	chr11	+	1917	14	FSM	ENSMUSG00000056598.17	ENSMUST00000108723.9	1917	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	9.60892090438596	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGGTGTCAGTATTCTC	3421	False	NA	NA	False	AATATA	-22	NA	60244154	60285167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619_60266733_60268635_60268811_60275039_60275172_60278118_60278190_60279638_60279763_60284522_60284655_60284950
transcript_18549.known	chr11	+	2438	8	FSM	ENSMUSG00000056598.17	ENSMUST00000094140.9	2438	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	9.45235096552758	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTCCAAAGGACTCTGTG	3421	False	NA	NA	False	NA	NA	NA	60244154	60268104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619
transcript_18556.nic	chr11	-	1692	9	NIC	ENSMUSG00000042709.16	novel	719	8	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_8	146.351460532514	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307907	60291451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60302492_60302556_60307811
transcript_18563.known	chr11	-	1849	8	FSM	ENSMUSG00000042709.16	ENSMUST00000239016.2	1849	8	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTGAATCTTTG	NA	False	NA	-12	True	NA	NA	NA	60307925	60291463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
transcript_18564.nic	chr11	-	1628	8	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	105.029830553622	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307927	60291451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307811
transcript_18565.known	chr11	-	949	8	FSM	ENSMUSG00000042709.16	ENSMUST00000145532.9	949	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	104.174892192242	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGCTGCTGGCACCCTT	NA	False	NA	NA	False	NA	NA	NA	60307844	60292303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307576
transcript_18566.nic	chr11	-	1649	8	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	134.352870745478	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307927	60291451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307811
transcript_1858.known	chr1	+	763	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_1	90.5	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCCCTCTAACCTCA	NA	False	NA	52	True	AATAAA	-20	NA	58625542	58635123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_58625830_58630248_58630409_58634807
transcript_18586.known	chr11	+	4283	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_3	37.1408131305711	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCAATTTGTAAGTCAAA	NA	False	NA	27	True	AATAAA	-18	NA	60308087	60336103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
transcript_1859.known	chr1	+	3163	10	FSM	ENSMUSG00000026031.16	ENSMUST00000069333.8	3163	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.52347880008912	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAAAAAATGGTTGCCTA	3069	False	NA	NA	False	NA	NA	NA	58752475	58794324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_58752819_58765464_58765892_58768214_58768321_58770310_58770447_58771411_58771486_58774816_58774872_58779421_58779472_58780123_58780206_58791497_58792006_58792942
transcript_18590.nnic	chr11	+	1998	14	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	176.054557170758	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	False	NA	40	True	NA	NA	NA	60345423	60359580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_60345570_60347047_60347265_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
transcript_18591.known	chr11	+	1788	13	FSM	ENSMUSG00000020537.10	ENSMUST00000018568.4	1788	13	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_10	43.4117879536576	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	False	NA	40	True	NA	NA	NA	60345416	60359580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
transcript_186.known	SIRV6	+	1088	9	FSM	SIRV6A	SIRV605	1088	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1130	11331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
transcript_1860.known	chr1	+	2010	5	FSM	ENSMUSG00000026031.16	ENSMUST00000114309.8	2010	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.6393596310755	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTGTGCATTTGCTTT	3046	False	NA	NA	False	NA	NA	NA	58752452	58772386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_58752819_58765464_58765892_58768214_58768321_58770310_58770447_58771411
transcript_18604.known	chr11	+	5730	4	FSM	ENSMUSG00000042650.4	ENSMUST00000044250.4	5730	4	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	6.48074069840786	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCACCTGTTTGAGTTTTT	NA	False	NA	4	True	NA	NA	NA	60428803	60449338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60430022_60438513_60438595_60444539_60444696_60445063
transcript_1861.known	chr1	+	1849	10	FSM	ENSMUSG00000026029.15	ENSMUST00000191201.7	1849	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.65740096842011	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGTGCTCTCCACAGT	3027	False	NA	NA	False	NA	NA	NA	58834635	58885913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_58834898_58843157_58843274_58863073_58863407_58866365_58866472_58868031_58868171_58868254_58868309_58870764_58870827_58872791_58872934_58883502_58884005_58885780
transcript_18610.known	chr11	-	4060	30	FSM	ENSMUSG00000002812.5	ENSMUST00000002889.5	4060	30	0	0	0	0	multi-exon	TRUE	canonical	3	227	junction_19	35.2603363548522	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTACTTTTAATATTAAA	NA	False	NA	NA	False	ATTAAA	-26	NA	60618089	60604968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
transcript_1862.known	chr1	+	2585	9	FSM	ENSMUSG00000026029.15	ENSMUST00000027189.15	2585	9	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	4.14578098794425	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATTCTTCCAGGTTAG	2924	False	NA	NA	False	ATTAAA	-17	NA	58834532	58886662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_58834898_58863073_58863407_58866365_58866472_58868031_58868171_58868254_58868309_58870764_58870827_58872791_58872934_58883502_58884005_58885780
transcript_18624.known	chr11	+	4303	22	FSM	ENSMUSG00000020536.13	ENSMUST00000052346.10	4303	22	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_21	57.9955428735457	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGCACACATGTGGACA	NA	False	NA	39	True	AATAAA	-24	NA	60590548	60605012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746_60603868_60603954
transcript_18627.known	chr11	+	4268	21	FSM	ENSMUSG00000020536.13	ENSMUST00000108719.4	4268	21	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_6	33.7192452465947	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGCACACATGTGGACA	NA	False	NA	39	True	AATAAA	-24	NA	60590670	60605012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746
transcript_18647.nic	chr11	-	3310	16	ISM	ENSMUSG00000002812.5	ENSMUST00000002889.5	4060	30	-1353	4754	-1353	330	5prime_fragment	FALSE	canonical	3	227	junction_5	22.6798001166971	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACATCAAATTGGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	60619442	60609722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
transcript_1865.known	chr1	-	6189	16	FSM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_7	7.62335592475883	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTGTGATTTT	1547	False	NA	0	True	AATAAA	-41	NA	59012589	58939607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_58943342_58945864_58945971_58947681_58947949_58949108_58949408_58950794_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405_58985695_59012395
transcript_18653.nic	chr11	+	2590	4	NIC	ENSMUSG00000018599.6	novel	2522	4	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	59.6713219785406	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60619202	60623777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_60619394_60621108_60621262_60621408_60621619_60621741
transcript_18654.known	chr11	+	2522	4	FSM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	26.4701089281224	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60619223	60623777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60619394_60621108_60621262_60621455_60621619_60621741
transcript_18657.known	chr11	+	716	3	FSM	ENSMUSG00000018599.6	ENSMUST00000154890.2	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	20.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGCCTTCGAGCGCAAG	NA	False	NA	NA	False	NA	NA	NA	60619268	60621822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60619394_60621108_60621619_60621741
transcript_18659.nic	chr11	+	2860	2	ISM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	-23	2	-23	-2	intron_retention	FALSE	canonical	3	155	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATGTGTAATTCTTGC	NA	False	NA	12	True	AATAAA	-15	NA	60619200	60623775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_60619394_60621108
transcript_18661.known	chr11	-	3741	19	FSM	ENSMUSG00000002814.16	ENSMUST00000002891.11	3741	19	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_8	18.9965071513323	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGGTGGCATTCAGTC	NA	False	NA	1	True	AATAAA	-16	NA	60668191	60630883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
transcript_18669.known	chr11	-	3542	18	FSM	ENSMUSG00000002814.16	ENSMUST00000102668.10	3542	18	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	18.3744218184581	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTAAGTAGATCTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	60668091	60632716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
transcript_18674.known	chr11	+	7391	2	FSM	ENSMUSG00000049323.9	ENSMUST00000056907.7	7391	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGTTCCTAATTGTAGG	NA	False	NA	13	True	AATAAA	-21	NA	60668350	60679113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60671208_60674579
transcript_18679.known	chr11	+	3544	1	FSM	ENSMUSG00000049323.9	ENSMUST00000102667.5	3544	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTTTTTCAATGGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	60668349	60671893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60668300_60671900
transcript_18680.known	chr11	-	2858	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	0	0	0	0	multi-exon	TRUE	canonical	3	983	junction_2	78.1211180853749	778	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	-8	True	AATAAA	-19	NA	60702091	60678929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
transcript_18682.known	chr11	+	3277	7	FSM	ENSMUSG00000042569.14	ENSMUST00000108718.2	3277	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	30.3845721085919	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTCTTTAATCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	60721504	60751021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
transcript_18683.nnic	chr11	+	1288	7	NNC	ENSMUSG00000042569.14	novel	1553	7	NA	NA	17	-277	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	85.6536955160462	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721473	60748972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_60721587_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
transcript_18688.known	chr11	-	725	3	FSM	ENSMUSG00000043284.13	ENSMUST00000155031.2	725	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	10	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTCCCGCCTGCCTCTG	7834	False	NA	NA	False	NA	NA	NA	60769613	60755812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60756175_60766585_60766874_60769538
transcript_18689.known	chr11	-	1457	2	FSM	ENSMUSG00000043284.13	ENSMUST00000062677.12	1457	2	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	0	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7349	False	NA	-5	True	ATTAAA	-17	NA	60770098	60755277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60756175_60769538
transcript_18690.known	chr11	-	4179	3	FSM	ENSMUSG00000018931.4	ENSMUST00000019075.4	4179	3	0	0	0	0	multi-exon	TRUE	canonical	3	156	junction_2	31	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAACAAACCAC	6624	False	NA	NA	False	NA	NA	NA	60804638	60793071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60796948_60797707_60797827_60804454
transcript_18691.known	chr11	-	1291	2	FSM	ENSMUSG00000042549.11	ENSMUST00000123544.2	1291	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATGGGTATAAAATTC	NA	False	NA	NA	False	NA	NA	NA	60822693	60811742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_60812732_60822391
transcript_18693.known	chr11	+	2198	12	FSM	ENSMUSG00000018932.10	ENSMUST00000019076.10	2198	12	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_6	27.3405217988137	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCAAGCCTGCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	60822858	60843637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
transcript_18694.known	chr11	+	2096	11	FSM	ENSMUSG00000018932.10	ENSMUST00000130269.2	2096	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	128.562980674843	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGTGTGAGACTGACTGT	NA	False	NA	NA	False	NA	NA	NA	60822891	60843620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
transcript_18697.known	chr11	+	2291	2	FSM	ENSMUSG00000042529.15	ENSMUST00000089184.11	2291	2	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	0	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGCTCTTCTGTTT	NA	False	NA	30	True	AATAAA	-42	NA	60913389	60961957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_60913677_60959953
transcript_18699.known	chr11	+	764	3	FSM	ENSMUSG00000010142.13	ENSMUST00000137832.8	764	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGCAGATAGCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	61033286	61038759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_61033356_61037666_61037844_61038241
transcript_187.known	SIRV6	+	1435	9	FSM	SIRV6A	SIRV601	1435	9	0	0	0	0	multi-exon	TRUE	canonical	3	2056	junction_3	7596.8547757855	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACCGGGAGTATACTT	NA	False	NA	NA	False	NA	NA	NA	1000	11826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
transcript_18700.known	chr11	+	2556	5	FSM	ENSMUSG00000010142.13	ENSMUST00000010286.8	2556	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.76313972081441	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGTATGCTTTGGTGGT	NA	False	NA	NA	False	AATAAA	-31	NA	61017580	61040198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_61017642_61031645_61031776_61032086_61032318_61037666_61037844_61038241
transcript_18701.known	chr11	-	4434	13	FSM	ENSMUSG00000042506.16	ENSMUST00000041683.9	4434	13	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_4	25.4114748795806	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGACTCTCTGCCTCATTA	NA	False	NA	-4	True	AATAAA	-20	NA	61065881	61042610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61045340_61046005_61046156_61046593_61046657_61047996_61048089_61049117_61049245_61050030_61050190_61051397_61051504_61052139_61052288_61053652_61053823_61054551_61054654_61057496_61057611_61059085_61059219_61065540
transcript_18706.nic	chr11	-	3238	11	NIC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	38.2758409443868	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	1299	False	NA	NA	False	AATAAA	-14	NA	61158045	61135678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61137148_61138754_61138868_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
transcript_18712.known	chr11	-	3091	10	FSM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	16.3435342295084	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	1333	False	NA	NA	False	AATAAA	-14	NA	61158011	61135678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
transcript_18714.known	chr11	-	2578	10	FSM	ENSMUSG00000010025.20	ENSMUST00000108715.3	2578	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	33.8690287890148	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTGTTTCATTTTTAAT	1333	False	NA	NA	False	AATATA	-13	NA	61158011	61138352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61139309_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
transcript_18720.nnic	chr11	-	1978	12	NIC	ENSMUSG00000069855.10	novel	2377	17	NA	NA	5517	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_9	5.65393156562408	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTGTGCTGAGAATAT	NA	False	NA	NA	False	AATAAA	-13	NA	61227893	61192456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61193266_61193526_61193582_61194746_61194842_61198357_61198491_61199691_61199762_61200786_61200863_61201560_61201670_61203615_61203684_61204469_61204584_61216622_61216721_61219353_61219452_61227640
transcript_18729.known	chr11	-	2639	17	FSM	ENSMUSG00000010122.15	ENSMUST00000010267.10	2639	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_16	9.25675429078681	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGGCTGTAGATTATTA	NA	False	NA	-1	True	ATTAAA	-18	NA	61268907	61234226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61235355_61239484_61239558_61240270_61240366_61243487_61243621_61243891_61243962_61250177_61250254_61250345_61250455_61253512_61253581_61253652_61253767_61253848_61253947_61254219_61254318_61258498_61258544_61260076_61260120_61260943_61261093_61262581_61262651_61264180_61264283_61268738
transcript_1873.known	chr1	+	2960	12	FSM	ENSMUSG00000026027.14	ENSMUST00000027185.11	2960	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_7	10.2964328252857	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTTTTCTTCATCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	59012680	59034874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031362_59031535_59031809_59031915_59032051_59032297_59032719_59032763_59033451
transcript_1874.known	chr1	+	2070	11	FSM	ENSMUSG00000026027.14	ENSMUST00000123301.8	2070	11	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	23.192455669894	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAAGATGCAATTT	NA	False	NA	NA	False	ATTAAA	-16	NA	59012680	59034156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031809_59031915_59032051_59032297_59032719_59032763_59033451
transcript_18747.nic	chr11	-	3057	7	NIC	ENSMUSG00000001034.18	novel	3019	7	NA	NA	-14	0	intron_retention	FALSE	canonical	3	13	junction_4	77.5234731477434	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385106	61379637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383675_61383896_61384472_61384781_61384905
transcript_18750.nic	chr11	-	3144	7	NIC	ENSMUSG00000001034.18	novel	3069	7	NA	NA	-14	0	intron_retention	FALSE	canonical	3	31	junction_5	75.7840499196382	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385106	61379637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384331_61384781_61384905
transcript_18752.nic	chr11	-	3126	7	NIC	ENSMUSG00000001034.18	novel	3134	7	NA	NA	-14	0	intron_retention	FALSE	canonical	3	42	junction_5	71.8410668690888	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385106	61379637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384349_61384781_61384905
transcript_18754.known	chr11	-	3069	7	FSM	ENSMUSG00000001034.18	ENSMUST00000108714.2	3069	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	75.7840499196382	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385122	61379637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384422_61384781_61384905
transcript_18756.nnic	chr11	-	2961	7	NNC	ENSMUSG00000001034.18	novel	3019	7	NA	NA	7	0	intron_retention	FALSE	canonical	3	23	junction_6	78.9523414613032	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385085	61379637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384760_61384905
transcript_18757.known	chr11	-	3019	7	FSM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_5	27.9861076647365	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385122	61379637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384781_61384905
transcript_1876.known	chr1	+	1348	7	FSM	ENSMUSG00000026027.14	ENSMUST00000114296.8	1348	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	9.28110386155057	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAGCTTATGTCGTGTT	NA	False	NA	NA	False	AATAAA	-17	NA	59012680	59030671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171
transcript_18766.known	chr11	-	3255	6	FSM	ENSMUSG00000001034.18	ENSMUST00000152755.8	3255	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	83.0093970584054	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385092	61379637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384331
transcript_18768.nic	chr11	-	3580	6	NIC	ENSMUSG00000001034.18	novel	3134	7	NA	NA	-14	0	intron_retention	FALSE	canonical	3	192	junction_5	22.1178660815188	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385106	61379637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61384781_61384905
transcript_18778.known	chr11	-	3134	7	FSM	ENSMUSG00000001034.18	ENSMUST00000125840.8	3134	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	86.2491545852286	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385122	61379637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383888_61384349_61384781_61384905
transcript_18779.known	chr11	-	674	1	FSM	ENSMUSG00000060808.5	ENSMUST00000137010.2	674	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCAGTTTTCTGGAGGGC	NA	False	NA	NA	False	AATAAA	-14	NA	61395885	61395211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61395200_61395900
transcript_1878.known	chr1	-	2131	13	FSM	ENSMUSG00000072295.8	ENSMUST00000097080.4	2131	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	3.19722101554181	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACATAGCACATATGT	NA	False	NA	NA	False	ATTAAA	-14	NA	59134059	59089664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_59090445_59091654_59091693_59097814_59097879_59099730_59099837_59101554_59101690_59105308_59105389_59106935_59107005_59107841_59107887_59108875_59109002_59114155_59114302_59115829_59115882_59117041_59117129_59133656
transcript_18780.known	chr11	+	817	7	FSM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	19.5739339144917	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	False	NA	23	True	AATAAA	-23	NA	61395969	61403757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295_61400359_61403197_61403266_61403477
transcript_18798.known	chr11	-	4317	11	FSM	ENSMUSG00000001036.18	ENSMUST00000178202.8	4317	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_9	137.591569509182	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGGGTTTTGGCTGTGTC	NA	False	NA	-1	True	TATAAA	-24	NA	61470513	61408075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61456647_61456721_61470392
transcript_18805.known	chr11	-	4452	11	FSM	ENSMUSG00000001036.18	ENSMUST00000179936.8	4452	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	141.578246916679	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGGGTTTTGGCTGTGTC	NA	False	NA	-1	True	TATAAA	-24	NA	61470513	61408075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61434983_61435155_61436975_61437738_61456647_61456721_61470392
transcript_18809.known	chr11	-	4243	10	FSM	ENSMUSG00000001036.18	ENSMUST00000001063.15	4243	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	113.072029921715	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470511	61408074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61470392
transcript_18817.nic	chr11	-	3025	10	NIC	ENSMUSG00000001036.18	novel	4452	11	NA	NA	-15	-1369	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	123.776780367017	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGGAATTTGATTACACAAAA	NA	False	NA	NA	False	NA	NA	NA	61470528	61409444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61434983_61435155_61436975_61437738_61470392
transcript_18820.nnic	chr11	-	2967	10	NIC	ENSMUSG00000001036.18	novel	4452	11	NA	NA	-58	-1369	combination_of_known_splicesites	FALSE	canonical	3	21	junction_9	124.703302202656	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGGAATTTGATTACACAAAA	NA	False	NA	NA	False	NA	NA	NA	61470571	61409444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61444335_61444406_61470392
transcript_18822.known	chr11	-	4207	9	FSM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	30.1330383466387	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470511	61408074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61470392
transcript_1883.known	chr1	-	6342	34	FSM	ENSMUSG00000026024.15	ENSMUST00000027178.13	6342	34	0	0	0	0	multi-exon	TRUE	canonical	2	89	junction_12	16.3968238094348	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTCTATGACTGTGGAA	NA	False	NA	2	True	AATAAA	-20	NA	59276390	59202084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_59203375_59206341_59206439_59206621_59206772_59207309_59207372_59207547_59207594_59208995_59209173_59209595_59209719_59212314_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
transcript_18842.nic	chr11	-	1092	4	ISM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	-8	16343	-6	802	5prime_fragment	FALSE	canonical	3	259	junction_1	25.0377492776186	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCGAAAGCTTGTTGCAA	NA	False	NA	NA	False	AGTAAA	-17	NA	61470519	61424417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_61424508_61426096_61426210_61436975_61437738_61470392
transcript_18844.known	chr11	-	332	3	FSM	ENSMUSG00000001036.18	ENSMUST00000141335.2	332	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGACAACTTCATCTA	NA	False	NA	NA	False	NA	NA	NA	61470488	61437574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61437738_61456647_61456721_61470392
transcript_18845.nic	chr11	-	295	2	ISM	ENSMUSG00000001036.18	ENSMUST00000001063.15	4243	10	-8	29495	-6	5	5prime_fragment	FALSE	canonical	3	295	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAACTTCATCTATCAGA	NA	False	NA	NA	False	GATAAA	-3	NA	61470519	61437569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_61437738_61470392
transcript_18847.nic	chr11	+	3121	6	NIC	ENSMUSG00000042377.9	novel	4778	5	NA	NA	-46	-1747	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.9293765408777	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACATGGGCCCACAGTGTC	NA	False	NA	NA	False	ATTAAA	-11	NA	61574870	61599030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_61574995_61575278_61575882_61585935_61586104_61592468_61592594_61593282_61594544_61598190
transcript_1885.known	chr1	-	1823	13	FSM	ENSMUSG00000038079.15	ENSMUST00000087475.11	1823	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	58.3887237020604	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAAGCTTTATTAACTG	4340	False	NA	-17	True	AATAAA	-17	NA	59158965	59139755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59158861
transcript_18850.known	chr11	+	4778	5	FSM	ENSMUSG00000042377.9	ENSMUST00000093019.6	4778	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	2.38484800354236	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTGTTGTCATTGAACT	NA	False	NA	NA	False	AATAAA	-28	NA	61575244	61600777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_61575882_61585935_61586104_61592468_61592594_61593282_61594544_61598190
transcript_18857.nic	chr11	-	1984	13	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	72.6714447970376	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	190	False	NA	-7	True	AATAAA	-22	NA	61652940	61620479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652305_61652401_61652779
transcript_1886.known	chr1	-	1869	13	FSM	ENSMUSG00000038079.15	ENSMUST00000094917.10	1869	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	71.220851737551	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4052	False	NA	-10	True	AATAAA	-24	NA	59159253	59139748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59159110
transcript_18863.known	chr11	-	1837	12	FSM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_11	44.7137821487915	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	242	False	NA	-7	True	AATAAA	-22	NA	61652888	61620479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
transcript_18872.known	chr11	-	1771	11	FSM	ENSMUSG00000020528.15	ENSMUST00000168115.8	1771	11	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_10	57.9565354382058	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	216	False	NA	-3	True	AATAAA	-26	NA	61652914	61620475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
transcript_18873.known	chr11	-	1734	11	FSM	ENSMUSG00000020528.15	ENSMUST00000151966.8	1734	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	65.5872701063248	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	292	False	NA	-7	True	AATAAA	-22	NA	61652838	61620479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652779
transcript_18879.nic	chr11	-	1727	10	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	77.5972508104078	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	203	False	NA	-7	True	AATAAA	-22	NA	61652927	61620479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61652779
transcript_18882.known	chr11	-	5743	27	FSM	ENSMUSG00000004798.15	ENSMUST00000004920.4	5743	27	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_8	4.53666848543571	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATTTCATATCATGTA	NA	False	NA	NA	False	AATAAA	-22	NA	61745899	61666474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61668666_61670499_61670636_61672417_61672576_61672831_61672951_61674362_61674542_61678254_61678464_61682259_61682410_61689888_61689993_61690285_61690477_61690727_61691015_61692308_61692390_61694467_61694614_61698887_61699026_61703543_61703605_61710110_61710283_61715464_61715554_61716667_61716716_61718427_61718511_61720217_61720277_61721415_61721518_61724238_61724313_61725605_61725780_61730935_61730973_61732124_61732158_61741887_61741930_61744091_61744185_61745312
transcript_18885.known	chr11	-	3874	15	FSM	ENSMUSG00000047804.16	ENSMUST00000102650.10	3874	15	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	17.9790127081323	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTGTGCATTTTGT	NA	False	NA	NA	False	TTTAAA	-30	NA	61821078	61762132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_61763848_61768132_61768229_61768799_61768853_61777525_61777609_61781063_61781174_61784205_61784380_61787473_61787619_61791135_61791273_61794732_61794857_61795600_61795686_61800673_61800773_61805849_61806408_61806909_61807093_61813607_61813656_61820814
transcript_18887.known	chr11	+	6676	13	FSM	ENSMUSG00000042331.14	ENSMUST00000202179.2	6676	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	9.09326673973661	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGGTGACATTTATCCGA	NA	False	NA	14	True	AATAAA	-29	NA	61967922	62113839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_61968063_62008525_62010109_62019025_62019234_62022655_62022730_62023101_62023281_62037131_62037278_62038393_62038495_62042695_62042778_62047312_62047467_62052633_62052737_62096209_62096327_62102469_62102530_62110110
transcript_18891.known	chr11	+	674	5	FSM	ENSMUSG00000042331.14	ENSMUST00000202744.4	674	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.5108644332213	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAAAGAGAGCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	61967884	62028910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_61968063_62019025_62019234_62022655_62022730_62023101_62023281_62028875
transcript_18893.known	chr11	+	6797	13	FSM	ENSMUSG00000042331.14	ENSMUST00000092415.9	6797	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	9.38823140367177	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTTCACCTGGTGACAT	NA	False	NA	6	True	AATAAA	-21	NA	61967820	62113831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_61968063_62008525_62010109_62019025_62019234_62022655_62022730_62023101_62023308_62037131_62037278_62038393_62038495_62042695_62042778_62047312_62047467_62052633_62052737_62096209_62096327_62102469_62102530_62110110
transcript_18894.known	chr11	+	1845	2	FSM	ENSMUSG00000018500.3	ENSMUST00000018644.3	1845	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGCACTGGCTTCTTGCA	8723	False	NA	NA	False	AATAAA	-20	NA	62139809	62157279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62140263_62155887
transcript_18896.known	chr11	-	732	5	FSM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_4	57.8986182909402	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172201	62158049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
transcript_18897.nnic	chr11	-	647	3	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_2	132	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172241	62158049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_62158433_62159529_62159635_62172082
transcript_18902.nic	chr11	-	1927	16	NIC	ENSMUSG00000018501.18	novel	1695	15	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	168	junction_7	105.040732839959	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGATGATGAAGAAAAAG	NA	False	NA	-39	True	GATAAA	-33	NA	62348205	62275582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
transcript_18905.nic	chr11	-	1871	16	NIC	ENSMUSG00000018501.18	novel	1695	15	NA	NA	-47	-56	combination_of_known_junctions	FALSE	canonical	3	168	junction_7	105.040732839959	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAGAAGAAAAGGAAGAGGA	NA	False	NA	-95	True	AAGAAA	-3	NA	62348205	62275638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
transcript_18912.nic	chr11	-	1841	15	NIC	ENSMUSG00000018501.18	novel	1695	15	NA	NA	-47	2358	combination_of_known_junctions	FALSE	canonical	3	168	junction_6	94.6632053597362	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATATTAGTTTTACTAAAT	NA	False	NA	NA	False	NA	NA	NA	62348205	62280516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
transcript_18913.nic	chr11	-	1783	15	NIC	ENSMUSG00000018501.18	novel	1695	15	NA	NA	-47	2300	combination_of_known_junctions	FALSE	canonical	3	168	junction_6	94.6632053597362	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAATTATAAGGCCCTCG	NA	False	NA	NA	False	AAGAAA	-3	NA	62348205	62280574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
transcript_1892.known	chr1	-	2977	13	FSM	ENSMUSG00000026024.15	ENSMUST00000159166.8	2977	13	0	0	0	0	multi-exon	FALSE	canonical	2	94	junction_2	9.94847838728226	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTGGGCCCCATTAAGC	NA	False	NA	NA	False	NA	NA	NA	59276390	59230767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
transcript_18923.nic	chr11	-	1338	11	NIC	ENSMUSG00000018501.18	novel	1695	15	NA	NA	-47	3042	combination_of_known_junctions	FALSE	canonical	3	168	junction_2	108.390451608986	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACAAGGGAATACTAT	NA	False	NA	NA	False	AATAGA	-30	NA	62348205	62289166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
transcript_18928.nic	chr11	-	1239	10	NIC	ENSMUSG00000018501.18	novel	1695	15	NA	NA	-47	180	combination_of_known_junctions	FALSE	canonical	3	168	junction_1	107.015171417796	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGAGGTCCTATCCTTGT	NA	False	NA	NA	False	AAGAAA	-18	NA	62348205	62292028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
transcript_18932.nic	chr11	-	1212	9	ISM	ENSMUSG00000018501.18	ENSMUST00000018645.13	9037	46	-47	84777	-47	180	5prime_fragment	FALSE	canonical	3	140	junction_1	114.72242315694	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGAGGTCCTATCCTTGT	NA	False	NA	NA	False	AAGAAA	-18	NA	62348205	62292028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
transcript_18935.known	chr11	-	3171	9	FSM	ENSMUSG00000018501.18	ENSMUST00000069456.11	3171	9	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	63.6836664695116	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCGCACCATAAATTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	62348149	62292208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
transcript_18943.nic	chr11	-	920	5	ISM	ENSMUSG00000018501.18	ENSMUST00000069456.11	3171	9	-56	18218	-47	129	5prime_fragment	FALSE	canonical	3	403	junction_2	26.6211851727154	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTAAGTGTGGCAAGCCC	NA	False	NA	NA	False	AAAAAG	-4	NA	62348205	62310426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
transcript_18944.known	chr11	-	646	5	FSM	ENSMUSG00000018501.18	ENSMUST00000141447.2	646	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	178.793700951683	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCATGTGGAGATGACCA	NA	False	NA	NA	False	NA	NA	NA	62349367	62310555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62349280
transcript_18945.known	chr11	-	1695	15	FSM	ENSMUSG00000018501.18	ENSMUST00000155486.8	1695	15	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_7	105.245582582174	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGATGATGAAGAAAAAG	NA	False	NA	-39	True	GATAAA	-33	NA	62329341	62275582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163
transcript_18946.known	chr11	-	690	2	FSM	ENSMUSG00000018501.18	ENSMUST00000160171.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAACCAAACCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62286018	62282874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62283510_62285963
transcript_18949.known	chr11	+	3410	10	FSM	ENSMUSG00000042298.19	ENSMUST00000050646.13	3410	10	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	27.2192742167915	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCAAATGTCTGTCTTT	NA	False	NA	14	True	NA	NA	NA	62172309	62207252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62172520_62172610_62172715_62174422_62174534_62174956_62174996_62175828_62175886_62176649_62176712_62182949_62183045_62199867_62200020_62203841_62204005_62204835
transcript_18953.known	chr11	+	2193	9	FSM	ENSMUSG00000042298.19	ENSMUST00000101075.11	2193	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	62.3493183603478	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTGTATGGATTCTAAT	NA	False	NA	16	True	AATAAA	-12	NA	62172307	62206072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62172520_62172610_62172715_62174422_62174534_62175828_62175886_62176649_62176712_62182949_62183045_62199867_62200020_62203841_62204005_62204835
transcript_18956.known	chr11	+	1025	2	FSM	ENSMUSG00000042298.19	ENSMUST00000136477.2	1025	2	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	62172298	62173414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62172520_62172610
transcript_1896.nnic	chr1	-	1466	11	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_10	51.7934358775318	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAAAAGCAGGTGATC	4340	False	NA	NA	False	NA	NA	NA	59158965	59140069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59158861
transcript_18965.known	chr11	+	2174	7	FSM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	0	0	0	0	multi-exon	TRUE	canonical	3	156	junction_1	58.9736287580211	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTTTACATAAAGCAGTAT	NA	False	NA	NA	False	GATAAA	-4	NA	62349285	62405243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
transcript_18973.nnic	chr11	+	1309	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53026	-515	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	112	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAGCTGGGCCCACACCT	NA	False	NA	23	True	AATAAA	-27	NA	62402459	62404728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_62402636_62402963_62403098_62403729
transcript_18974.nnic	chr11	+	1562	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53026	-262	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	112	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGAAAGAAAATACAAACAT	NA	False	NA	NA	False	AAAAAG	-14	NA	62402459	62404981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_62402636_62402963_62403098_62403729
transcript_1898.nic	chr1	-	2185	8	ISM	ENSMUSG00000026024.15	ENSMUST00000159166.8	2977	13	0	14657	0	9385	5prime_fragment	FALSE	canonical	3	104	junction_1	7.16567783084826	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTCTTTTAAGCAAACTT	NA	False	NA	NA	False	AATGAA	-42	NA	59276390	59245424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
transcript_18987.known	chr11	-	1032	5	FSM	ENSMUSG00000018509.9	ENSMUST00000018653.8	1032	5	0	0	0	0	multi-exon	FALSE	canonical	3	1369	junction_4	69.2639877569867	655	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACTATGACATATTTCT	8371	False	NA	-14	True	AATAAA	-19	NA	62430087	62415771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62416114_62418317_62418433_62424710_62424781_62427107_62427207_62429681
transcript_18990.known	chr11	+	1499	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	0	0	0	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62441996	62444039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62442422_62442965
transcript_18991.known	chr11	+	2909	16	FSM	ENSMUSG00000018507.17	ENSMUST00000018651.14	2909	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.27214904527135	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACGTTGCCTCTGGTCGT	6741	False	NA	NA	False	NA	NA	NA	62465363	62491341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62465427_62466799_62466952_62469128_62469422_62471997_62472132_62473668_62473960_62475201_62475501_62480476_62480651_62480988_62481145_62481732_62481832_62483051_62483123_62483576_62483743_62484978_62485046_62485748_62486078_62487735_62487864_62489059_62489140_62490934
transcript_18992.nic	chr11	+	3086	15	ISM	ENSMUSG00000018507.17	ENSMUST00000018651.14	2909	16	980	216	-29	0	3prime_fragment	FALSE	canonical	1	1	junction_1	4.86553896169326	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCAAGTCTTCTAGAAG	7721	False	NA	9	True	TATAAA	-11	NA	62466343	62491125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_62466952_62469128_62469422_62471997_62472132_62473668_62473960_62475201_62475501_62480476_62480651_62480988_62481145_62481732_62481832_62483051_62483123_62483576_62483743_62484978_62485046_62485748_62486078_62487735_62487864_62489059_62489140_62490934
transcript_18994.known	chr11	+	2650	15	FSM	ENSMUSG00000018507.17	ENSMUST00000102643.2	2650	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.99642729500647	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCAAGTCTTCTAGAAG	8328	False	NA	9	True	TATAAA	-11	NA	62466950	62491125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62467123_62469128_62469422_62471997_62472132_62473668_62473960_62475201_62475501_62480476_62480651_62480988_62481145_62481732_62481832_62483051_62483123_62483576_62483743_62484978_62485046_62485748_62486078_62487735_62487864_62489059_62489140_62490934
transcript_18995.known	chr11	+	462	5	FSM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	0	0	0	0	multi-exon	FALSE	canonical	3	3662	junction_1	404.852056311932	831	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCAGTGTTTTGGATG	NA	False	NA	NA	False	AATAAA	-18	NA	62493702	62495633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62493850_62494060_62494109_62494422_62494473_62495228_62495293_62495480
transcript_19.known	ERCC-00054	+	256	1	FSM	ERCC-00054A	DQ516731	256	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00054_+_0_300
transcript_190.nic	SIRV6	+	893	8	ISM	SIRV6A	SIRV605	1088	9	-135	543	-5	0	5prime_fragment	FALSE	canonical	0	0	junction_4	8559.28275890794	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	995	10788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724
transcript_1900.known	chr1	+	4532	1	FSM	ENSMUSG00000041075.9	ENSMUST00000114246.4	4532	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGTGAATGTTTATTTAC	5354	False	NA	NA	False	AATAAA	-15	NA	59521582	59526114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_59521600_59526100
transcript_19005.known	chr11	-	1984	4	FSM	ENSMUSG00000046417.15	ENSMUST00000057194.9	1984	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_3	14.7044966667419	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGGACTGTGCTTTATTAG	5470	False	NA	-2	True	AATACA	-17	NA	62539349	62495709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62497073_62500028_62500142_62511259_62511389_62538970
transcript_19011.nnic	chr11	+	1342	3	NNC	ENSMUSG00000048497.12	novel	343	2	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGAGTCTGTGTCTGGT	NA	False	NA	1	True	NA	NA	NA	62539481	62557179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_62539643_62555495_62556067_62556569
transcript_19012.nnic	chr11	+	1337	3	NNC	ENSMUSG00000048497.12	novel	589	2	NA	NA	37	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGAGTCTGTGTCTGGT	NA	False	NA	1	True	NA	NA	NA	62539526	62557179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_62539683_62555495_62556067_62556569
transcript_19014.known	chr11	+	343	2	FSM	ENSMUSG00000048497.12	ENSMUST00000062860.5	343	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCGGTCTCTTCGCCCTCA	NA	False	NA	NA	False	NA	NA	NA	62539489	62555685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62539643_62555495
transcript_19016.known	chr11	+	589	2	FSM	ENSMUSG00000048497.12	ENSMUST00000155759.3	589	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTAACAGGACAGACGC	NA	False	NA	NA	False	NA	NA	NA	62539660	62556062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62539683_62555495
transcript_19017.known	chr11	+	374	2	FSM	ENSMUSG00000048497.12	ENSMUST00000142112.2	374	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGACGAGGCCAGACGAG	NA	False	NA	NA	False	NA	NA	NA	62539645	62555547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62539968_62555495
transcript_19018.known	chr11	-	3051	6	FSM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	11.4262854856686	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGGTTTTTAGTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	62680288	62669212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62671726_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
transcript_19023.nnic	chr11	-	3005	5	NIC	ENSMUSG00000047342.18	novel	3051	6	NA	NA	-69	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	17.8535710713571	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGGTTTTTAGTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	62680357	62669212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_62671726_62674497_62674588_62678784_62678871_62679755_62679916_62680201
transcript_19026.known	chr11	-	641	5	FSM	ENSMUSG00000047342.18	ENSMUST00000145474.8	641	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	12.1243556529821	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAACATTTTTTCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	62680235	62674341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
transcript_19028.known	chr11	-	678	3	FSM	ENSMUSG00000047342.18	ENSMUST00000149215.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATGAGAATAATAATAATAC	NA	False	NA	NA	False	AAAACA	-17	NA	62680249	62678400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62678871_62679755_62679916_62680201
transcript_19029.known	chr11	-	1668	7	FSM	ENSMUSG00000047342.18	ENSMUST00000207597.2	1668	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	23.6249632568791	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATCGGAGGGTTCATACT	NA	False	NA	NA	False	NA	NA	NA	62680247	62643402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62644509_62646613_62646679_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
transcript_19030.known	chr11	-	1979	6	FSM	ENSMUSG00000047342.18	ENSMUST00000108705.8	1979	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.35790251874	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGGGTGTGTCTGTGTG	NA	False	NA	-5	True	AATAGA	-16	NA	62680249	62670430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_62671911_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
transcript_19032.nic	chr11	+	3613	7	NIC	ENSMUSG00000047821.17	novel	3574	7	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_1	12.7017059221718	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTGCTAGTATTTG	NA	False	NA	NA	False	TTTAAA	-5	NA	62711252	62733762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_62711464_62711560_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
transcript_19033.known	chr11	+	3906	6	FSM	ENSMUSG00000047821.17	ENSMUST00000055006.12	3906	6	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_4	2.33238075793812	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTGCTAGTATTTG	NA	False	NA	NA	False	TTTAAA	-5	NA	62711056	62733762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
transcript_19035.known	chr11	+	3574	7	FSM	ENSMUSG00000047821.17	ENSMUST00000108703.2	3574	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	14.5420845212171	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTGCTAGTATTTG	NA	False	NA	NA	False	TTTAAA	-5	NA	62711294	62733762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62711464_62711557_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
transcript_19039.known	chr11	+	1784	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGATGTGTGGTCCCATT	9241	False	NA	10	True	TATAAA	-18	NA	62770280	62786011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
transcript_19043.known	chr11	+	1800	5	FSM	ENSMUSG00000018217.13	ENSMUST00000018361.10	1800	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.78535710713571	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTCTCTCCCGGGTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	63022337	63050373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_63022481_63023950_63024071_63025246_63025347_63041944_63042086_63049077
transcript_19044.known	chr11	-	4911	2	FSM	ENSMUSG00000070407.6	ENSMUST00000094103.4	4911	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGAGTATGTTCCTATT	NA	False	NA	-2	True	AATAAA	-15	NA	63813116	63776617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_63780572_63812159
transcript_19045.known	chr11	-	2915	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCGTGTGTCCTGTGT	5007	False	NA	-4	True	AATAAA	-14	NA	63970292	63853452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
transcript_19055.known	chr11	-	706	3	FSM	ENSMUSG00000042148.9	ENSMUST00000125702.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	15.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTACACATGATTGTGGA	5005	False	NA	NA	False	NA	NA	NA	63970294	63962223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_63962663_63964362_63964497_63970161
transcript_19056.known	chr11	+	959	3	FSM	ENSMUSG00000087497.8	ENSMUST00000146333.2	959	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCATGTTTCTTA	4332	False	NA	NA	False	AATAAA	-22	NA	63970407	63974085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_63970604_63970684_63970841_63973478
transcript_19057.known	chr11	+	901	2	FSM	ENSMUSG00000087497.8	ENSMUST00000135037.8	901	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCATGTTTCTTA	4234	False	NA	NA	False	AATAAA	-22	NA	63970309	63974085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_63970604_63973478
transcript_19058.known	chr11	+	3939	2	FSM	ENSMUSG00000047759.7	ENSMUST00000058652.6	3939	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCATGTAGGTGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	64326157	64413667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_64327453_64411023
transcript_19066.known	chr11	-	4074	21	FSM	ENSMUSG00000033389.17	ENSMUST00000047463.15	4074	21	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_17	3.6779749863206	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGCACATGGTCTTGTT	NA	False	NA	0	True	ATTAAA	-20	NA	65053787	64892864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_64894277_64896279_64896332_64898888_64899267_64900707_64900866_64902696_64902925_64912766_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996_64966037_65053411
transcript_19067.known	chr11	-	3982	21	FSM	ENSMUSG00000033389.17	ENSMUST00000093002.12	3982	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.12157620169878	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGCACATGGTCTTGT	NA	False	NA	-1	True	ATTAAA	-19	NA	65053730	64892865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_64894277_64898888_64899267_64900707_64900866_64902696_64902925_64903732_64903751_64912766_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996_64966037_65053411
transcript_19069.nic	chr11	-	2144	16	ISM	ENSMUSG00000033389.17	ENSMUST00000047463.15	4074	21	-9	19613	-9	-19611	5prime_fragment	FALSE	canonical	3	13	junction_12	3.56775684273591	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGGAATTTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	65053796	64912477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996_64966037_65053411
transcript_19075.known	chr11	+	2771	25	FSM	ENSMUSG00000020549.15	ENSMUST00000071891.12	2771	25	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_24	61.5767221304718	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTGACAACAGTTTGTA	NA	False	NA	10	True	AATAAA	-18	NA	64869863	64892895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820_64892040_64892657
transcript_19077.known	chr11	+	3329	24	FSM	ENSMUSG00000020549.15	ENSMUST00000140369.2	3329	24	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_13	71.3428581053949	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTCTTGACAACAGTTTG	NA	False	NA	8	True	AATAAA	-16	NA	64869916	64892893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883181_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
transcript_1909.known	chr1	-	1215	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	0	0	0	0	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	1723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	589	False	NA	0	True	AATAAA	-21	NA	59709993	59678592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
transcript_19093.nic	chr11	-	3659	12	NIC	ENSMUSG00000033352.12	novel	3695	11	NA	NA	-39	-108	combination_of_known_junctions	FALSE	canonical	3	50	junction_10	82.1603954379018	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGTAATCTGATTTT	NA	False	NA	-15	True	AATAAA	-16	NA	65679162	65579176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65666558_65666592_65678961
transcript_19095.nic	chr11	-	2701	12	NIC	ENSMUSG00000033352.12	novel	3695	11	NA	NA	-39	1024	combination_of_known_junctions	FALSE	canonical	3	50	junction_10	82.1603954379018	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAAAGAAGCCACTTCATC	NA	False	NA	NA	False	AAAAAG	-7	NA	65679162	65580134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65666558_65666592_65678961
transcript_19098.known	chr11	-	3695	11	FSM	ENSMUSG00000033352.12	ENSMUST00000046963.10	3695	11	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_10	28.4703354388388	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTCTGGTTCTTTTCT	NA	False	NA	-1	True	ATTAAA	-42	NA	65679123	65579068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65678961
transcript_191.known	SIRV6	+	574	8	FSM	SIRV6A	SIRV602	574	8	0	0	0	0	multi-exon	FALSE	canonical	3	8561	junction_3	5767.41567350754	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1124	11279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
transcript_19107.nic	chr11	-	3474	10	NIC	ENSMUSG00000033352.12	novel	3695	11	NA	NA	-62	-108	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	72.4284235863924	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGTAATCTGATTTT	NA	False	NA	-15	True	AATAAA	-16	NA	65679185	65579176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65647094_65647198_65678961
transcript_19109.nic	chr11	-	2516	10	NIC	ENSMUSG00000033352.12	novel	3695	11	NA	NA	-62	1024	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	72.4284235863924	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAAAGAAGCCACTTCATC	NA	False	NA	NA	False	AAAAAG	-7	NA	65679185	65580134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65647094_65647198_65678961
transcript_19116.known	chr11	+	2270	7	FSM	ENSMUSG00000018347.17	ENSMUST00000071465.9	2270	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	5.11262055005932	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCCTTGTAGCTGCCTT	NA	False	NA	14	True	AATAAA	-20	NA	65698000	65720064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_65698088_65705190_65705678_65706743_65706952_65707314_65707407_65712755_65712841_65713650_65713765_65718867
transcript_19123.known	chr11	+	4200	2	FSM	ENSMUSG00000048070.5	ENSMUST00000123434.3	4200	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGGTTCAGAAGTGTGTT	NA	False	NA	3	True	AATAAA	-13	NA	66802806	66820702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_66802969_66816664
transcript_19126.known	chr11	+	1597	6	FSM	ENSMUSG00000050270.13	ENSMUST00000061786.6	1597	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	4.45421149026402	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAATTACTGGGGAGAAT	3918	False	NA	NA	False	NA	NA	NA	66915979	66926138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934
transcript_19129.nic	chr11	+	1799	2	ISM	ENSMUSG00000050270.13	ENSMUST00000079077.12	1147	7	-7	7208	-7	-7208	intron_retention	FALSE	canonical	3	21	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	3911	False	NA	NA	False	AAGAAA	-45	NA	66915972	66918408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_66916098_66916734
transcript_1913.known	chr1	-	829	3	FSM	ENSMUSG00000026021.16	ENSMUST00000123857.2	829	3	0	0	0	0	multi-exon	FALSE	canonical	3	3473	junction_2	443	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCCAAGTATTCTTTAT	589	False	NA	NA	False	NA	NA	NA	59709993	59683154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_59683754_59694616_59694692_59709838
transcript_19132.known	chr11	-	1531	5	FSM	ENSMUSG00000020910.17	ENSMUST00000146338.8	1531	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	39.9710832978042	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTGGGCATATAC	NA	False	NA	NA	False	AATAAA	-10	NA	66943420	66928730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_66929272_66931044_66931162_66932218_66932934_66942506_66942605_66943360
transcript_19134.known	chr11	-	1283	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943396	66928866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
transcript_19137.nic	chr11	-	1244	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943455	66928866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
transcript_19138.nic	chr11	-	2504	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-52	0	intron_retention	FALSE	canonical	3	79	junction_3	12.2474487139159	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943472	66928866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_66929272_66931044_66932934_66942506_66942605_66943360
transcript_19144.nic	chr11	+	1777	7	NIC	ENSMUSG00000069844.13	novel	2412	6	NA	NA	-19	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	109.193126564308	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTGGTACTTACATGAA	NA	False	NA	4	True	AATAAA	-22	NA	66943476	66956388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731_66955453_66956096
transcript_19146.known	chr11	+	2412	6	FSM	ENSMUSG00000069844.13	ENSMUST00000092996.5	2412	6	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	26.3469163281019	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACATGAAGCCTAATGAA	NA	False	NA	14	True	AATAAA	-32	NA	66943495	66956398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731
transcript_19149.known	chr11	+	2186	6	FSM	ENSMUSG00000069844.13	ENSMUST00000108690.10	2186	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	119.607023205161	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	66943495	66956157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_66943743_66944600_66944692_66946541_66946755_66947340_66947434_66949152_66949269_66954731
transcript_19151.nic	chr11	+	2946	16	NIC	ENSMUSG00000020908.15	novel	6031	41	NA	NA	15116	0	intron_retention	TRUE	canonical	2	13	junction_1	5.25187797099497	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTTGTTTTGTCTTGT	NA	False	NA	6	True	AATAAA	-17	NA	66984241	66993112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_66984584_66985299_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
transcript_19152.nic	chr11	+	4151	25	ISM	ENSMUSG00000060180.13	ENSMUST00000081911.12	5817	39	17558	-84	17558	0	3prime_fragment	FALSE	canonical	3	52	junction_14	14.9210887300119	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCATGCTCTGCTGTGTT	NA	False	NA	22	True	AATAAA	-18	NA	67235486	67262412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_67235705_67235806_67235895_67238714_67238833_67239625_67239750_67240395_67240533_67241059_67241316_67242779_67243023_67244398_67244576_67245472_67245619_67245727_67245819_67246628_67247019_67248933_67249061_67249146_67249266_67251106_67251304_67252074_67252259_67253230_67253397_67254012_67254138_67255287_67255597_67255677_67255882_67257978_67258105_67258382_67258554_67259930_67260036_67260134_67260231_67261745_67261881_67262313
transcript_19158.nic	chr11	+	3314	20	ISM	ENSMUSG00000060180.13	ENSMUST00000081911.12	5817	39	17693	4320	17693	-2022	internal_fragment	FALSE	canonical	3	52	junction_14	13.2330485303728	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGGCCGACTTGGCTCA	NA	False	NA	NA	False	GATAAA	-14	NA	67235621	67258008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_67235705_67235806_67235895_67238714_67238833_67239625_67239750_67240395_67240533_67241059_67241316_67242779_67243023_67244398_67244576_67245472_67245619_67245727_67245819_67246628_67247019_67248933_67249061_67249146_67249266_67251106_67251304_67252074_67252259_67253230_67253397_67254012_67254138_67255287_67255597_67255677_67255882_67257978
transcript_19160.nic	chr11	+	2921	18	ISM	ENSMUSG00000060180.13	ENSMUST00000081911.12	5817	39	17665	6919	17665	-4621	internal_fragment	FALSE	canonical	3	52	junction_14	11.8680752893072	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCAGCGTGCTGTGGAGG	NA	False	NA	NA	False	AATAAA	-7	NA	67235593	67255409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_67235705_67235806_67235895_67238714_67238833_67239625_67239750_67240395_67240533_67241059_67241316_67242779_67243023_67244398_67244576_67245472_67245619_67245727_67245819_67246628_67247019_67248933_67249061_67249146_67249266_67251106_67251304_67252074_67252259_67253230_67253397_67254012_67254138_67255287
transcript_19164.nic	chr11	+	1119	8	ISM	ENSMUSG00000060180.13	ENSMUST00000081911.12	5817	39	17688	17865	17688	-15567	internal_fragment	FALSE	canonical	3	60	junction_6	10.2777747134885	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCTCTGCAGGAAGCCC	NA	False	NA	NA	False	AAGAAA	-44	NA	67235616	67244463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_67235705_67235806_67235895_67238714_67238833_67239625_67239750_67240395_67240533_67241059_67241316_67242779_67243023_67244398
transcript_19166.known	chr11	+	1941	14	FSM	ENSMUSG00000033066.18	ENSMUST00000108681.9	1941	14	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_8	3.36357093985776	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGTCCGGGGGGTTCCTG	1123	False	NA	NA	False	AAAACA	-43	NA	67345916	67574286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_67346601_67493933_67494055_67520435_67520517_67534106_67534193_67543684_67543739_67550844_67550935_67552876_67552993_67556213_67556289_67561419_67561499_67565063_67565193_67566424_67566549_67572050_67572131_67573460_67573560_67574163
transcript_19170.known	chr11	-	4447	15	FSM	ENSMUSG00000020905.12	ENSMUST00000108677.2	4447	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	6.60086574408453	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTTCCTTTCCTTCAT	NA	False	NA	NA	False	ATTAAA	-19	NA	67812979	67745348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_67747371_67766088_67766254_67767198_67767358_67770636_67770971_67771090_67771218_67772031_67772110_67774031_67774136_67778575_67778688_67782175_67782312_67783838_67783975_67788046_67788183_67789709_67789803_67795146_67795251_67804579_67804712_67812370
transcript_19176.known	chr11	+	1417	1	FSM	ENSMUSG00000055134.6	ENSMUST00000068548.5	1417	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAAATCCAAAA	NA	False	NA	NA	False	NA	NA	NA	67813201	67814618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_67813200_67814600
transcript_19179.known	chr11	+	4394	8	FSM	ENSMUSG00000020903.14	ENSMUST00000021285.14	4394	8	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	20.1626043021455	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAACTGGTACTTTTGTTC	NA	False	NA	NA	False	TATAAA	-19	NA	67857018	68097974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67902140_67902266_67911731_67911825_68000102_68000205_68094531
transcript_19184.known	chr11	+	1497	3	FSM	ENSMUSG00000020903.14	ENSMUST00000108675.2	1497	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	29.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATGGGGGCCTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	67857305	67865417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_67857344_67860597_67860698_67864058
transcript_19185.known	chr11	+	717	3	FSM	ENSMUSG00000020903.14	ENSMUST00000142649.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	159	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCAGAGGACTTCCATGA	NA	False	NA	NA	False	NA	NA	NA	67857331	67864467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_67857540_67860597_67860698_67864058
transcript_19186.known	chr11	+	1638	5	FSM	ENSMUSG00000020903.14	ENSMUST00000021286.11	1638	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	126.986957991756	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTCTGGAGTGTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	67857294	67878433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67877150
transcript_19187.known	chr11	-	5738	7	FSM	ENSMUSG00000020902.13	ENSMUST00000021284.4	5738	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	10.7922297150414	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCAGCCTTTCTTGGTGGT	NA	False	NA	4	True	AATAAA	-21	NA	68277652	68100189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_68104161_68117361_68117437_68148280_68148335_68151322_68151473_68168248_68168438_68275928_68277011_68277435
transcript_19194.known	chr11	-	944	2	FSM	ENSMUSG00000020902.13	ENSMUST00000135141.2	944	2	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATCTACAAGTCCATGGA	NA	False	NA	NA	False	NA	NA	NA	68277838	68276469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_68277011_68277435
transcript_19197.known	chr11	+	2060	1	FSM	ENSMUSG00000048329.8	ENSMUST00000053211.8	2060	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTATTTTTTATGTGT	4204	False	NA	NA	False	AGTAAA	-17	NA	68447011	68449071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68447000_68449100
transcript_19198.known	chr11	+	7791	41	FSM	ENSMUSG00000020900.16	ENSMUST00000102611.10	7791	41	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_6	27.8530855561821	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTTCCGCACCTTCTG	NA	False	NA	11	True	AATAAA	-25	NA	68582740	68707458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68583009_68590035_68590412_68612145_68612303_68625213_68625242_68636142_68636246_68642767_68642861_68650571_68650636_68651478_68651578_68653336_68653481_68653663_68653760_68655061_68655181_68655866_68656020_68659024_68659199_68661709_68661884_68662697_68662813_68673931_68674126_68674208_68674331_68675752_68675823_68676021_68676183_68676443_68676553_68676650_68676783_68678163_68678371_68680930_68681069_68681442_68681567_68682688_68682861_68683881_68684095_68688157_68688303_68689075_68689283_68691640_68691746_68692402_68692556_68692933_68693183_68693665_68693879_68695452_68695666_68697950_68698113_68699618_68699748_68700985_68701075_68702426_68702551_68702622_68702832_68703794_68703904_68705207_68705381_68705752
transcript_1920.known	chr1	+	9507	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	0	0	0	0	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGCGGGTGCTGCT	NA	False	NA	2	True	AATAAA	-17	NA	59724167	59758203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
transcript_19204.known	chr11	+	7759	41	FSM	ENSMUSG00000020900.16	ENSMUST00000092984.6	7759	41	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	38.6242718377965	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGGACTCTGCTTCCGC	NA	False	NA	3	True	AATAAA	-17	NA	68583141	68707450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68583386_68590035_68590412_68612145_68612303_68625213_68625242_68636142_68636246_68642767_68642861_68650571_68650636_68651478_68651578_68653336_68653481_68653663_68653760_68655061_68655181_68655866_68656020_68659024_68659199_68661709_68661884_68662697_68662813_68673931_68674126_68674208_68674331_68675752_68675823_68676021_68676183_68676443_68676553_68676650_68676783_68678163_68678371_68680930_68681069_68681442_68681567_68682688_68682861_68683881_68684095_68688157_68688303_68689075_68689283_68691640_68691746_68692402_68692556_68692933_68693183_68693665_68693879_68695452_68695666_68697950_68698113_68699618_68699748_68700985_68701075_68702426_68702551_68702622_68702832_68703794_68703904_68705207_68705381_68705752
transcript_19217.known	chr11	+	1811	2	FSM	ENSMUSG00000020900.16	ENSMUST00000139059.2	1811	2	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCGCCTGCTCTGTTTAC	681	False	NA	-77	True	AATAAA	-18	NA	68705187	68707370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68705381_68705752
transcript_19219.nic	chr11	-	2447	10	NIC	ENSMUSG00000018736.15	novel	2382	9	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	74.7099742130432	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743991	68712259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_68713492_68716995_68717031_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
transcript_19222.known	chr11	-	2382	9	FSM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_5	15.9530561335438	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743961	68712259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
transcript_19226.known	chr11	+	526	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	0	0	0	0	multi-exon	FALSE	canonical	3	13360	junction_1	1585.12172683642	1275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	False	NA	33	True	ATTAAA	-14	NA	68792408	68795360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
transcript_19228.known	chr11	+	657	4	FSM	ENSMUSG00000060938.15	ENSMUST00000101014.9	657	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6885.97448925471	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATTAAAGACTGCTTA	NA	False	NA	9	True	AAGAAA	-41	NA	68792435	68795336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68792639_68793095_68793263_68794004_68794146_68795190
transcript_19229.known	chr11	+	606	4	FSM	ENSMUSG00000060938.15	ENSMUST00000167436.3	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	7534.13486886333	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGTCTTGTGTGGTGT	NA	False	NA	32	True	ATTAAA	-13	NA	68792460	68795359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68792584_68793095_68793269_68794004_68794146_68795190
transcript_19232.known	chr11	-	4372	17	FSM	ENSMUSG00000052921.14	ENSMUST00000108671.2	4372	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	3.00974978195863	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTGGTCTAAAAACACAG	5985	False	NA	-2	True	NA	NA	NA	68848306	68833982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_68835656_68837191_68837297_68837386_68837470_68837809_68837963_68838061_68838223_68838401_68838495_68838591_68838667_68840796_68840927_68841825_68841979_68842157_68842319_68842444_68842657_68842736_68842796_68844312_68844368_68844637_68844989_68845243_68845900_68847671_68847804_68848186
transcript_19233.known	chr11	+	1828	5	FSM	ENSMUSG00000018740.15	ENSMUST00000102606.10	1828	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	4.96865172858795	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGTGTCTTATGTTTA	5558	False	NA	6	True	CATAAA	-18	NA	68858956	68863342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68859864_68861549_68861616_68862009_68862163_68862494_68862630_68862775
transcript_19235.known	chr11	-	820	5	FSM	ENSMUSG00000032892.15	ENSMUST00000038644.5	820	5	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_2	47.2989164780759	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7236	False	NA	-2	True	AATAAA	-22	NA	68864669	68863309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_68863568_68863768_68863855_68863942_68864100_68864266_68864384_68864467
transcript_19237.known	chr11	-	967	4	FSM	ENSMUSG00000032892.15	ENSMUST00000132093.8	967	4	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_1	54.6036221834738	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7290	False	NA	-2	True	AATAAA	-22	NA	68864615	68863309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_68863855_68863942_68864100_68864266_68864384_68864467
transcript_19238.nic	chr11	-	1030	4	NIC	ENSMUSG00000032892.15	novel	820	5	NA	NA	-46	0	intron_retention	FALSE	canonical	3	482	junction_2	50.8876758710354	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTCTGTGCCTTCAAAT	7190	False	NA	-5	True	AATAAA	-19	NA	68864715	68863312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_68863568_68863768_68863855_68863942_68864384_68864467
transcript_19241.known	chr11	-	568	3	FSM	ENSMUSG00000032892.15	ENSMUST00000143444.8	568	3	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_2	39.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTCTGTGCCTTCAAAT	7736	False	NA	-5	True	AATAAA	-19	NA	68864169	68863312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_68863568_68863768_68863855_68863942
transcript_19243.known	chr11	-	6373	28	FSM	ENSMUSG00000020899.17	ENSMUST00000021282.12	6373	28	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_27	41.3360546031052	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTTTTCCGATGGCCT	NA	False	NA	-11	True	NA	NA	NA	68899286	68876522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
transcript_19247.known	chr11	-	2129	11	FSM	ENSMUSG00000020899.17	ENSMUST00000172987.2	2129	11	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_10	40.4914805854269	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATCATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	68899277	68887780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
transcript_1925.nic	chr1	+	1690	14	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	171	junction_3	607.139017838788	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAGCAAAAAAAGC	NA	False	NA	NA	False	GATAAA	-16	NA	59724132	59748258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161
transcript_19253.nic	chr11	-	2484	8	NIC	ENSMUSG00000020899.17	novel	2129	11	NA	NA	-13	-1830	intron_retention	FALSE	canonical	3	373	junction_7	45.7593527854901	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTTTTAACAAAGAAGGG	NA	False	NA	NA	False	GATAAA	-7	NA	68899299	68889610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_68890964_68891070_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
transcript_19255.nic	chr11	-	1685	8	NIC	ENSMUSG00000020899.17	novel	2129	11	NA	NA	-13	-2629	intron_retention	FALSE	canonical	3	373	junction_7	45.7593527854901	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAACATGAGACTAGGGTA	NA	False	NA	NA	False	NA	NA	NA	68899299	68890409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_68890964_68891070_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
transcript_1927.nic	chr1	+	1762	14	ISM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-86	8449	-48	-684	5prime_fragment	FALSE	canonical	3	1434	junction_3	175.9835589416	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATAAAGGAAGAGCCACT	NA	False	NA	-40	True	NA	NA	NA	59724081	59749754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653
transcript_1928.nic	chr1	+	1819	14	ISM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-86	8392	-48	-627	5prime_fragment	FALSE	canonical	3	1434	junction_3	175.9835589416	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGATTTTGGTGTTGT	NA	False	NA	17	True	NA	NA	NA	59724081	59749811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653
transcript_19280.known	chr11	+	3978	23	FSM	ENSMUSG00000020898.19	ENSMUST00000116359.3	3978	23	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_14	52.8328292942908	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5272	False	NA	18	True	AATAAA	-18	NA	68906922	68927296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
transcript_19284.known	chr11	+	4164	23	FSM	ENSMUSG00000020898.19	ENSMUST00000021278.14	4164	23	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_14	54.4241833704208	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTCATCTCTGAGGT	5086	False	NA	21	True	AATAAA	-21	NA	68906736	68927299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
transcript_193.nic	SIRV6	+	522	6	ISM	SIRV6A	SIRV602	574	8	-129	491	-5	0	5prime_fragment	FALSE	canonical	3	8561	junction_3	6677.14660614847	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	995	10788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724
transcript_19310.nnic	chr11	+	3769	22	NIC	ENSMUSG00000020898.19	novel	3978	23	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	37	junction_3	97.9944697407626	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5269	False	NA	18	True	AATAAA	-18	NA	68906919	68927296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_68906992_68911855_68912020_68913202_68913441_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
transcript_19345.known	chr11	+	1831	9	FSM	ENSMUSG00000020897.13	ENSMUST00000108666.8	1831	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	202.492592457107	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936472	68942490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68936637_68936760_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
transcript_19347.known	chr11	+	1950	8	FSM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_1	36.6756327936728	1539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936477	68942490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
transcript_19351.nic	chr11	+	2023	8	NIC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	-9	0	intron_retention	FALSE	canonical	3	10	junction_1	225.027889427973	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936463	68942490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_68936835_68938551_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
transcript_1937.nic	chr1	+	1624	13	ISM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-86	9945	-48	0	5prime_fragment	FALSE	canonical	3	1434	junction_3	169.099986858532	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAGCAAAAAAAGC	NA	False	NA	NA	False	GATAAA	-16	NA	59724081	59748258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161
transcript_19381.known	chr11	+	1862	1	FSM	ENSMUSG00000045176.4	ENSMUST00000051888.4	1862	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGAGCCTGTTTTTTTGT	NA	False	NA	17	True	ATTAAA	-17	NA	68950542	68952404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68950500_68952400
transcript_19383.known	chr11	+	779	5	FSM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_4	23.6893963620857	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGCGTATACTATTTTT	4647	False	NA	NA	False	AATAAA	-19	NA	68961631	68963856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963346_68963571
transcript_19385.known	chr11	+	1263	4	FSM	ENSMUSG00000020895.15	ENSMUST00000094081.5	1263	4	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_2	22.0655588845805	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAATAGATATTATTC	4652	False	NA	NA	False	AATAAA	-14	NA	68961636	68964119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248
transcript_19387.known	chr11	+	2205	5	FSM	ENSMUSG00000020894.17	ENSMUST00000021273.13	2205	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	21.4126131053639	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCCAAAATCTTTT	NA	False	NA	18	True	AATAAA	-18	NA	68979315	68983210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801_68980854_68981475
transcript_19389.known	chr11	+	1113	4	FSM	ENSMUSG00000020894.17	ENSMUST00000117780.2	1113	4	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	8.17856276425687	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGGGCCTCTCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	68979335	68981516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801
transcript_19392.known	chr11	+	4671	23	FSM	ENSMUSG00000020893.18	ENSMUST00000021271.14	4671	23	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_18	7.25181652933985	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAGACTTTGTGAAATGA	NA	False	NA	NA	False	AATACA	-26	NA	68989773	69000786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68989835_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215_68996450_68997278_68997896_68998358_68998546_68998686_68998877_68999186_68999338_68999906
transcript_19393.known	chr11	+	3507	18	FSM	ENSMUSG00000020893.18	ENSMUST00000101004.9	3507	18	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	5.21177798431451	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGGCCCCATTCCCCCT	NA	False	NA	NA	False	NA	NA	NA	68986042	68997284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_68986130_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215
transcript_19394.nic	chr11	+	3345	18	ISM	ENSMUSG00000020893.18	ENSMUST00000021271.14	4671	23	-28	3666	-28	-2	5prime_fragment	FALSE	canonical	3	10	junction_1	5.84636047433339	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGATTCTTCCCCG	NA	False	NA	10	True	AATAAA	-16	NA	68989745	68997120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_68989835_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215
transcript_19399.known	chr11	+	3019	15	FSM	ENSMUSG00000020892.11	ENSMUST00000021268.9	3019	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	4.22335585688414	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTGTTTTGATGATG	617	False	NA	21	True	AATAAA	-22	NA	69016721	69039941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69017376_69018151_69018357_69019440_69019523_69020391_69020512_69020830_69020957_69023558_69023663_69023854_69024028_69024763_69024908_69024989_69025194_69025282_69025370_69025831_69026002_69026697_69026820_69033011_69033113_69033672_69033844_69039385
transcript_194.known	SIRV6	+	1311	6	FSM	SIRV6A	SIRV613	1311	6	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3105	11824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
transcript_19405.known	chr11	+	2431	15	FSM	ENSMUSG00000032807.6	ENSMUST00000036424.3	2431	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11.3227241259625	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGTCTGAGAACGTGGGG	1905	False	NA	7	True	AATAAA	-18	NA	69047814	69060618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69048220_69049099_69049305_69053493_69053576_69053718_69053812_69053946_69054070_69054333_69054438_69054752_69054926_69055157_69055302_69056676_69056881_69057055_69057143_69057599_69057770_69058181_69058304_69059603_69059705_69060043_69060215_69060371
transcript_19407.nnic	chr11	-	3097	20	NNC	ENSMUSG00000032782.20	novel	3861	19	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_19	29.2836921517554	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTTTAAGAATGTTTAA	NA	False	NA	NA	False	AATAAA	-25	NA	69214628	69190312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515_69213655_69214445
transcript_19410.nnic	chr11	-	3472	20	NNC	ENSMUSG00000032782.20	novel	3861	19	NA	NA	-101	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	29.4722744023727	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTTTAAGAATGTTTAA	NA	False	NA	NA	False	AATAAA	-25	NA	69214702	69190312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515_69214111_69214600
transcript_19415.known	chr11	-	3861	19	FSM	ENSMUSG00000032782.20	ENSMUST00000092973.6	3861	19	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_15	16.162847964421	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTTTAAGAATGTTTAA	NA	False	NA	NA	False	AATAAA	-25	NA	69214601	69190312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515
transcript_19420.known	chr11	-	3776	18	FSM	ENSMUSG00000032782.20	ENSMUST00000123176.8	3776	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_17	30.4995320175113	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTTTAAGAATGTTTAA	NA	False	NA	NA	False	AATAAA	-25	NA	69214601	69190312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69213515
transcript_19432.nic	chr11	-	1606	2	ISM	ENSMUSG00000032782.20	ENSMUST00000092973.6	3861	19	-149	22076	-149	-6371	5prime_fragment	FALSE	canonical	3	93	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACGAGAAGAAAAAGTGCCC	NA	False	NA	NA	False	AAGAAA	-2	NA	69214750	69212388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_69212760_69213515
transcript_19433.known	chr11	+	751	5	FSM	ENSMUSG00000049299.15	ENSMUST00000102602.8	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	97.8682149627753	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214805	69216619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69214893_69214983_69215083_69215220_69215292_69215649_69215789_69216264
transcript_19437.known	chr11	+	759	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_2	10.7082522694727	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214888	69216619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
transcript_19438.known	chr11	+	628	4	FSM	ENSMUSG00000049299.15	ENSMUST00000060956.13	628	4	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	212.171314429323	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214900	69216619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216383
transcript_19440.known	chr11	+	2538	14	FSM	ENSMUSG00000018470.9	ENSMUST00000018614.3	2538	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	7.85293824331087	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCACGTCTGAAATTGCA	NA	False	NA	11	True	AATAAA	-20	NA	69217083	69223868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69217750_69218945_69218990_69219076_69219115_69219334_69219415_69220675_69220721_69220808_69220854_69221008_69221053_69221222_69221310_69221565_69221652_69221876_69221998_69222087_69222183_69222285_69222407_69222561_69222651_69222891
transcript_19442.known	chr11	+	1026	2	FSM	ENSMUSG00000043419.12	ENSMUST00000218008.2	1026	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAAAAGATGCT	NA	False	NA	NA	False	NA	NA	NA	69231596	69232722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69231885_69231984
transcript_19445.known	chr11	-	7261	40	FSM	ENSMUSG00000018474.19	ENSMUST00000108661.8	7261	40	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_39	13.548558783203	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	NA	False	NA	-11	True	TATAAA	-16	NA	69260232	69234098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69235305_69235961_69236089_69236296_69236461_69237443_69237640_69237891_69238025_69238578_69238688_69239218_69239348_69239535_69239638_69239746_69239883_69239996_69240119_69240615_69240779_69240932_69241078_69241617_69241752_69241909_69241996_69242925_69242992_69243372_69243551_69244013_69244181_69244489_69244722_69244887_69245013_69245190_69245309_69246164_69246297_69246456_69246599_69247032_69247207_69247361_69247484_69247763_69247902_69248190_69248392_69248530_69248723_69249068_69249169_69249952_69250085_69250652_69250865_69250997_69251202_69251370_69251602_69251874_69252069_69252210_69252362_69252496_69252628_69252861_69253149_69254445_69254571_69254798_69254970_69255517_69255631_69259961
transcript_19447.nic	chr11	-	535	3	ISM	ENSMUSG00000018474.19	ENSMUST00000092971.13	6066	39	-30	19657	-15	-3284	5prime_fragment	FALSE	canonical	2	7	junction_2	9.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGAAAAGGGGAGAAGGG	NA	False	NA	NA	False	NA	NA	NA	69260247	69254833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_69254970_69255517_69255631_69259961
transcript_19448.nnic	chr11	-	473	3	NNC	ENSMUSG00000018474.19	novel	6066	39	NA	NA	-4322	-3284	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	6	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGAAAAGGGGAGAAGGG	NA	False	NA	NA	False	NA	NA	NA	69264554	69254833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_69254970_69255517_69255631_69264330
transcript_19450.nnic	chr11	-	3781	5	NNC	ENSMUSG00000044795.13	novel	753	4	NA	NA	-97	996	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	18.6731759484026	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGTGGGTCTGATGTGT	NA	False	NA	0	True	NA	NA	NA	69286554	69281754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_69284365_69284414_69284695_69285453_69285673_69285797_69285875_69285959
transcript_19452.known	chr11	-	753	4	FSM	ENSMUSG00000044795.13	ENSMUST00000051620.5	753	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	12.1197726417986	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTGGAGTTTGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	69286159	69284437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69284695_69285453_69285673_69285797_69285875_69285959
transcript_19454.nic	chr11	+	565	3	NIC	ENSMUSG00000059278.10	novel	671	3	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	615.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286287	69287506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_69286508_69287002_69287187_69287345
transcript_19455.known	chr11	+	671	3	FSM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	0	0	0	0	multi-exon	FALSE	canonical	3	948	junction_1	166	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286472	69287506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69286799_69287002_69287187_69287345
transcript_19456.known	chr11	-	1582	2	FSM	ENSMUSG00000045377.6	ENSMUST00000050140.6	1582	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGGAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	AATGAA	-3	NA	69289060	69287344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69288708_69288841
transcript_19457.known	chr11	+	404	2	FSM	ENSMUSG00000059278.10	ENSMUST00000124932.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	1280	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286943	69287506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69287187_69287345
transcript_19458.known	chr11	+	533	3	FSM	ENSMUSG00000059278.10	ENSMUST00000082283.10	533	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	636	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286639	69287506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69286799_69286973_69287187_69287345
transcript_1946.nic	chr1	+	1527	12	ISM	ENSMUSG00000026020.10	ENSMUST00000027174.10	1713	13	-54	4446	-48	0	5prime_fragment	FALSE	canonical	3	1434	junction_3	173.779427022298	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAAGTCATTTAAGAATAA	NA	False	NA	24	True	NA	NA	NA	59724081	59746223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161
transcript_19473.known	chr11	-	3183	5	FSM	ENSMUSG00000003934.6	ENSMUST00000004036.6	3183	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	2.17944947177034	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGAAGGCTGGAAAATGAC	NA	False	NA	1	True	TTTAAA	-7	NA	69451031	69444917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69447096_69447518_69447624_69447731_69447825_69448025_69448319_69450517
transcript_19475.known	chr11	-	1891	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69470150	69452584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
transcript_19480.nic	chr11	-	2015	9	NIC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	-14	0	intron_retention	FALSE	canonical	3	103	junction_5	30.2321745000256	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69470164	69452584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
transcript_19482.nic	chr11	-	3002	9	NIC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	-80	-2	intron_retention	FALSE	canonical	3	103	junction_5	28.1236110768159	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGAGTCATTGTGTCTG	NA	False	NA	-6	True	TATAAA	-13	NA	69471161	69452586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
transcript_19495.known	chr11	+	1822	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108657.4	1822	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
transcript_19496.known	chr11	+	1771	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108658.10	1771	11	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	15	True	AATAAA	-16	NA	69471184	69482698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
transcript_195.known	SIRV6	+	1163	5	FSM	SIRV6A	SIRV610	1163	5	0	0	0	0	multi-exon	FALSE	canonical	3	12902	junction_1	2966.72052736688	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAAAATGGGGTTTGCC	NA	False	NA	NA	False	ATTAAA	-5	NA	2472	11690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724_11109_11205
transcript_19508.nic	chr11	+	1178	9	ISM	ENSMUSG00000059552.14	ENSMUST00000171247.8	1867	11	-67	2040	-67	11	5prime_fragment	FALSE	canonical	3	1895	junction_3	134.129543259492	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTGATGGAGAGTATTT	NA	False	NA	NA	False	AAGAAA	-4	NA	69471117	69480658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614
transcript_19516.nic	chr11	+	1080	8	ISM	ENSMUSG00000059552.14	ENSMUST00000171247.8	1867	11	-69	2219	-69	-168	5prime_fragment	FALSE	canonical	3	1895	junction_3	137.263785969845	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCGCAAAAAGGAAGTCC	NA	False	NA	NA	False	AAGAAA	-2	NA	69471115	69480479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398
transcript_19523.known	chr11	-	2842	7	FSM	ENSMUSG00000041329.14	ENSMUST00000047889.13	2842	7	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_6	5.18544972870135	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGAGCCCTGTGTGTG	NA	False	NA	-7	True	AATAAA	-33	NA	69496655	69490561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
transcript_19524.known	chr11	+	800	7	FSM	ENSMUSG00000069835.11	ENSMUST00000092969.2	800	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.7938424357067	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCAGCCATTTTGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69512877	69514696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69512942_69513081_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
transcript_19525.known	chr11	+	968	6	FSM	ENSMUSG00000069835.11	ENSMUST00000108656.9	968	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.72046505340853	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCAGCCATTTTGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69512849	69514696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
transcript_1953.nic	chr1	+	1324	10	ISM	ENSMUSG00000026020.10	ENSMUST00000027174.10	1713	13	-54	5760	-48	-1314	5prime_fragment	FALSE	canonical	3	1434	junction_3	182.546797652912	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGGTGAGTTGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	59724081	59744909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751
transcript_19539.nnic	chr11	+	2835	18	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	-177	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	282.868499899324	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523638	69544123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_69524225_69530215_69530269_69531059_69531154_69532107_69532180_69532266_69532416_69532872_69532967_69534663_69534781_69539630_69539802_69539975_69540055_69540553_69540664_69541288_69541376_69541669_69541899_69542064_69542263_69542348_69542550_69542803_69542900_69543035_69543134_69543429_69543768_69544060
transcript_19559.known	chr11	+	2951	17	FSM	ENSMUSG00000018765.6	ENSMUST00000018909.4	2951	17	0	0	0	0	multi-exon	FALSE	canonical	3	970	junction_6	95.5459436279217	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523815	69544123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69524225_69530215_69530269_69531059_69531154_69532107_69532180_69532266_69532416_69532872_69532967_69534663_69534781_69539630_69539802_69539975_69540055_69540553_69540664_69541288_69541376_69541669_69541899_69542064_69542263_69542348_69542550_69542803_69542900_69543035_69543134_69543429
transcript_1956.nic	chr1	+	578	5	NIC	ENSMUSG00000026020.10	novel	639	6	NA	NA	-48	-48	combination_of_known_junctions	FALSE	canonical	3	171	junction_3	894.401021634032	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAATAAACAGCTGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	59724081	59735163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136
transcript_1958.nic	chr1	+	509	4	ISM	ENSMUSG00000026020.10	ENSMUST00000027174.10	1713	13	-54	15458	-48	0	5prime_fragment	FALSE	canonical	3	1434	junction_3	302.033110767677	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAACCTCTGGCTGTCGCT	NA	False	NA	NA	False	AATAAA	-41	NA	59724081	59735211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136
transcript_196.known	SIRV6	+	485	4	FSM	SIRV6A	SIRV609	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	15063	junction_3	5493.41668626083	1247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAGTCAAGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	1137	2120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845
transcript_1960.known	chr1	+	725	2	FSM	ENSMUSG00000026020.10	ENSMUST00000186044.2	725	2	0	0	0	0	multi-exon	FALSE	canonical	3	2172	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAATGCTGGGATTAAAG	NA	False	NA	NA	False	NA	NA	NA	59724164	59730148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_59724386_59729644
transcript_19611.known	chr11	-	1321	7	FSM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_4	37.1427426738163	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6761	False	NA	-4	True	AATAAA	-33	NA	69553468	69547522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
transcript_19612.known	chr11	-	971	7	FSM	ENSMUSG00000018761.15	ENSMUST00000148242.8	971	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	228.446018423026	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATCCCTCCTTGTGAGCA	6816	False	NA	NA	False	AGTAAA	-37	NA	69553413	69547852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548883_69549391_69549525_69549636_69549703_69553294
transcript_19618.known	chr11	-	646	6	FSM	ENSMUSG00000018761.15	ENSMUST00000125389.2	646	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	239.282761602252	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGTCCTCCCCACATGA	6885	False	NA	NA	False	AATAGA	-41	NA	69553344	69547987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69549391_69549525_69549636_69549703_69553294
transcript_1962.known	chr1	+	12899	13	FSM	ENSMUSG00000067336.7	ENSMUST00000087435.7	12899	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	3.93347457373532	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATTGGTATAATTTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	59802558	59918173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_59803888_59852746_59852918_59854399_59854571_59880589_59880701_59881901_59881994_59884636_59884868_59886216_59886332_59890336_59890498_59891452_59891601_59898331_59898469_59902939_59903113_59906494_59907775_59909393
transcript_19622.known	chr11	+	861	2	FSM	ENSMUSG00000041287.6	ENSMUST00000047373.6	861	2	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGTCCCATTTGTAT	NA	False	NA	24	True	ATTAAA	-17	NA	69546139	69547553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69546726_69547278
transcript_19623.known	chr11	-	1230	6	FSM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	17.4653943556966	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3250	False	NA	-1	True	AATAAA	-19	NA	69556979	69555038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556328_69556763_69556845
transcript_19624.known	chr11	-	612	5	FSM	ENSMUSG00000018774.14	ENSMUST00000154124.2	612	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	48.9540600971972	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAGTTACCTTCCTTCT	3341	False	NA	-94	True	NA	NA	NA	69556888	69555131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556845
transcript_19636.known	chr11	-	1774	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	0	0	0	0	multi-exon	TRUE	canonical	3	9657	junction_10	1402.57834362292	6989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
transcript_1965.known	chr1	-	3650	11	FSM	ENSMUSG00000026018.13	ENSMUST00000027172.13	3650	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.7	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTCTCTAAAGTGTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	60082246	60028226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_60030399_60036609_60036871_60042814_60042865_60045392_60045479_60046966_60047066_60049267_60049394_60052978_60053178_60054870_60054995_60061736_60061810_60067226_60067396_60081955
transcript_19657.known	chr11	-	1845	10	FSM	ENSMUSG00000059796.17	ENSMUST00000128519.8	1845	10	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_9	1461.90417007037	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
transcript_1969.known	chr1	+	5532	8	FSM	ENSMUSG00000041040.13	ENSMUST00000036540.12	5532	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	7.88177955664784	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTTCTTTCTCTGTGTG	NA	False	NA	22	True	AATAAA	-15	NA	59952164	60024505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_59952912_59988211_59988364_59992093_59992184_59997480_59997595_60008112_60008257_60009644_60009871_60014041_60014163_60020567
transcript_19697.known	chr11	-	813	7	FSM	ENSMUSG00000059796.17	ENSMUST00000102589.12	813	7	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_6	1495.68305651818	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTCGGATTCTTGTCAAG	NA	False	NA	NA	False	AAGAAA	-14	NA	69563249	69559307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
transcript_197.known	SIRV6	+	574	4	FSM	SIRV6A	SIRV607	574	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10529.1711924538	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCAGTCAAGTCGTAG	NA	False	NA	NA	False	NA	NA	NA	1130	2540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_1187_1468_1736_1845_2027_2470
transcript_1972.known	chr1	-	3251	14	FSM	ENSMUSG00000026019.16	ENSMUST00000117438.8	3251	14	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_13	218.809771208535	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTGTCTAGGCTGATA	NA	False	NA	NA	False	AATAAA	-23	NA	60137804	60116026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137301
transcript_19720.known	chr11	-	2219	11	FSM	ENSMUSG00000005204.13	ENSMUST00000066760.8	2219	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_10	281.644616493907	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	8292	False	NA	-11	True	AATAAA	-11	NA	69572910	69563946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572814
transcript_19725.known	chr11	-	2313	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	1935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8530	False	NA	-5	True	AATAAA	-17	NA	69572672	69563940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
transcript_19729.known	chr11	-	1470	13	FSM	ENSMUSG00000018752.20	ENSMUST00000174159.8	1470	13	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_3	8.53871900358726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCCCCAAATTCTTTTG	5451	False	NA	-3	True	ATTAAA	-30	NA	69586636	69573873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69574171_69574679_69574819_69575043_69575160_69575310_69575359_69575485_69575565_69575854_69575957_69577782_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586268_69586421
transcript_19730.known	chr11	-	2235	13	FSM	ENSMUSG00000018752.20	ENSMUST00000180587.8	2235	13	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_12	10.9417650414466	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGACTGGTATCCGGGAA	5163	False	NA	NA	False	NA	NA	NA	69586924	69573402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69574171_69574679_69574819_69575043_69575163_69575310_69575359_69575485_69575565_69575854_69575957_69577782_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586271_69586421
transcript_19732.known	chr11	-	1435	7	FSM	ENSMUSG00000097328.8	ENSMUST00000181810.8	1435	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	8.13941029804985	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAGGTACCAGAAAAAAAA	5412	False	NA	NA	False	AATAGA	-6	NA	69586675	69577075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586268_69586421
transcript_19734.known	chr11	-	6740	29	FSM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	0	0	0	0	multi-exon	FALSE	canonical	2	202	junction_15	57.5883527056204	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	-3	True	AATAAA	-22	NA	69649463	69624822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806_69638940_69648956
transcript_19736.known	chr11	-	2155	11	FSM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_10	6.56429737291052	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTTGTCTATTTTTAA	3	True	NA	-2	True	ATTAAA	-24	NA	69686769	69674861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709_69684819_69684975_69685086_69685794_69685840_69686420_69686561_69686647
transcript_19743.known	chr11	-	1933	2	FSM	ENSMUSG00000089876.4	ENSMUST00000051025.5	1933	2	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGAATGGAAAGTGTTT	NA	False	NA	-6	True	ATTAAA	-12	NA	69696450	69694428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69695757_69695845
transcript_19745.known	chr11	+	492	4	FSM	ENSMUSG00000070394.11	ENSMUST00000094065.5	492	4	0	0	0	0	multi-exon	FALSE	canonical	3	1210	junction_1	145.470119115767	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGTCTTTATTCATC	NA	False	NA	NA	False	ATTAAA	-21	NA	69729349	69730444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69729476_69729745_69729778_69730013_69730095_69730191
transcript_19746.known	chr11	+	421	4	FSM	ENSMUSG00000070394.11	ENSMUST00000133967.8	421	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	597.808404832927	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTGGTGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	69729339	69730439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69729400_69729745_69729778_69730013_69730095_69730191
transcript_19747.nnic	chr11	+	448	4	NNC	ENSMUSG00000070394.11	novel	421	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	694.908307300723	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTGGTGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	69729337	69730439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_69729425_69729745_69729778_69730013_69730095_69730191
transcript_19748.known	chr11	+	387	3	FSM	ENSMUSG00000070394.11	ENSMUST00000156556.2	387	3	0	0	0	0	multi-exon	FALSE	canonical	3	1210	junction_1	148.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCTGGGGCCTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	69729380	69730273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69729476_69729745_69729778_69730013
transcript_1975.known	chr1	-	2850	14	FSM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_13	257.719103084491	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTGTCTAGGCTGATA	NA	False	NA	NA	False	AATAAA	-23	NA	60137305	60116026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137203
transcript_19750.known	chr11	+	953	2	FSM	ENSMUSG00000070394.11	ENSMUST00000139085.2	953	2	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTTTGGTGTCTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	69729388	69730438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69730095_69730191
transcript_19753.known	chr11	-	2778	14	FSM	ENSMUSG00000001583.14	ENSMUST00000001626.10	2778	14	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	5.7316726185222	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGACACAGCCTCCTTC	9080	False	NA	-6	True	AAAAAG	-27	NA	69749556	69741830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69742542_69742623_69742720_69742800_69743112_69743638_69743719_69743942_69744108_69744406_69744502_69745783_69746058_69746345_69746630_69746736_69746893_69747203_69747396_69747518_69747590_69747737_69747952_69749230_69749336_69749532
transcript_19763.known	chr11	+	1835	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108632.8	1835	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.6311566425741	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAGAAGCCGGATGT	NA	False	NA	15	True	TATAAA	-15	NA	69737201	69741862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69737349_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_19765.known	chr11	+	2785	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108633.9	2785	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	4.6246897303539	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGTGATTATGTGAGGATT	NA	False	NA	NA	False	NA	NA	NA	69737442	69742884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_19766.known	chr11	-	1798	8	FSM	ENSMUSG00000001583.14	ENSMUST00000108626.8	1798	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	4.4629998148038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGAAAGAAAAGAGG	9080	False	NA	NA	False	NA	NA	NA	69749556	69745305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69746058_69746345_69746630_69746736_69746893_69747203_69747396_69747518_69747590_69747737_69747952_69749230_69749336_69749532
transcript_19767.known	chr11	+	1927	7	FSM	ENSMUSG00000019461.13	ENSMUST00000019605.4	1927	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	3.33749739908346	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCGGATGTGATGGGA	NA	False	NA	22	True	TATAAA	-22	NA	69737501	69741869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_19768.known	chr11	-	2482	22	FSM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_20	9.40183800238705	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	9573	False	NA	-6	True	ATTAAA	-15	NA	69786365	69772392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
transcript_1977.known	chr1	-	10012	13	FSM	ENSMUSG00000026019.16	ENSMUST00000027173.15	10012	13	0	0	0	0	multi-exon	FALSE	canonical	3	863	junction_12	56.5618515923547	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTACTGATGTTTGCCTGC	NA	False	NA	NA	False	CATAAA	-13	NA	60137067	60108943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
transcript_19777.known	chr11	-	1640	9	FSM	ENSMUSG00000018570.18	ENSMUST00000102580.10	1640	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.57647321898295	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	9726	False	NA	-13	True	AATAAA	-15	NA	69791783	69788188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69788319_69788444_69788581_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
transcript_19778.known	chr11	-	1485	8	FSM	ENSMUSG00000018570.18	ENSMUST00000018714.13	1485	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_7	3.28260722659316	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	9745	False	NA	-13	True	AATAAA	-15	NA	69791764	69788188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
transcript_19788.known	chr11	+	4952	29	FSM	ENSMUSG00000047284.15	ENSMUST00000177476.8	4952	29	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_15	17.9310968625424	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCCCTCTGCTGAGAGGG	NA	False	NA	NA	False	NA	NA	NA	69792641	69804341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69793012_69793833_69794279_69794479_69794546_69794690_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798833_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
transcript_19789.known	chr11	+	5188	29	FSM	ENSMUSG00000047284.15	ENSMUST00000061837.11	5188	29	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	16.6703864896494	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGCCTCCGCCTCTGTC	NA	False	NA	15	True	AATAAA	-15	NA	69792716	69804646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69793012_69793833_69794279_69794479_69794546_69794690_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798839_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
transcript_19791.known	chr11	+	1159	11	FSM	ENSMUSG00000023170.15	ENSMUST00000116358.8	1159	11	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	67.5763272159711	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGCCTGAGTGCTGTTT	4091	False	NA	11	True	AATAAA	-21	NA	69804875	69807416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
transcript_19795.known	chr11	+	1220	10	FSM	ENSMUSG00000023170.15	ENSMUST00000057884.6	1220	10	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_9	31.9443961352292	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTGAGTGCTGTTTA	4233	False	NA	12	True	AATAAA	-22	NA	69805017	69807417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
transcript_198.known	SIRV6	+	531	4	FSM	SIRV6A	SIRV616	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_2	7304.14215816386	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	2285	10788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_2621_2740_2815_3106_3165_10724
transcript_19803.known	chr11	-	1373	7	FSM	ENSMUSG00000078812.11	ENSMUST00000070996.11	1373	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	9665.3113547021	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69810274_69810305_69811988
transcript_19805.known	chr11	-	1353	7	FSM	ENSMUSG00000078812.11	ENSMUST00000108611.8	1353	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	9790.70116658319	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811626
transcript_19806.known	chr11	-	1281	7	FSM	ENSMUSG00000078812.11	ENSMUST00000164359.8	1281	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	9789.73126404511	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAGTTGTTTATTTGTT	6572	False	NA	-9	True	AATAAA	-26	NA	69811911	69807539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811849
transcript_19807.known	chr11	-	852	7	FSM	ENSMUSG00000078812.11	ENSMUST00000108607.8	852	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	9783.67234080446	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGAGTTGGGTACTGCTTG	6467	False	NA	NA	False	NA	NA	NA	69812016	69807922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811249_69811988
transcript_19810.known	chr11	-	1259	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108612.8	1259	6	0	0	0	0	multi-exon	FALSE	canonical	3	1359	junction_5	7943.03597876782	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811626
transcript_19811.known	chr11	-	775	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108608.8	775	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_5	8383.38681917994	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGCTTGTGGTTTAGGT	6593	False	NA	NA	False	NA	NA	NA	69811890	69807912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811867
transcript_19812.known	chr11	-	1343	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	14468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
transcript_19822.known	chr11	-	1409	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108610.8	1409	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	8144.23656336185	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	7027	False	NA	-15	True	AATAAA	-20	NA	69811456	69807545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166
transcript_19823.known	chr11	+	1673	9	FSM	ENSMUSG00000018554.14	ENSMUST00000018698.12	1673	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	26.1291862674673	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTCTCTGGCTCTTCT	NA	False	NA	21	True	AGTAAA	-24	NA	69826621	69832431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69827075_69827722_69827787_69829167_69829202_69830063_69830154_69830699_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
transcript_19825.nic	chr11	+	5233	5	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	-133	0	intron_retention	FALSE	canonical	3	80	junction_3	5.06828373317832	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69826488	69832421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
transcript_19828.known	chr11	-	2524	11	FSM	ENSMUSG00000018566.15	ENSMUST00000018710.13	2524	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3.57910603363466	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGTGTCCTGTGCTGGA	NA	False	NA	2	True	ATTAAA	-40	NA	69838975	69833368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69834399_69834884_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
transcript_19833.known	chr11	-	1776	10	FSM	ENSMUSG00000018566.15	ENSMUST00000141837.9	1776	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	3.19722101554181	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGCTATAAGTGGTT	NA	False	NA	NA	False	AATAAA	-24	NA	69838990	69834617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
transcript_19835.known	chr11	+	1335	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	5.71547606649408	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTCCAGGCCGCTTTT	8743	False	NA	9	True	AATAAA	-19	NA	69856221	69858711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
transcript_19837.known	chr11	+	913	5	FSM	ENSMUSG00000018569.13	ENSMUST00000108597.8	913	5	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	50.4727649331796	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGGGGGGTTACTGGGA	8126	False	NA	-66	True	NA	NA	NA	69855604	69858636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69855747_69856710_69856976_69857768_69857934_69858045_69858131_69858380
transcript_1984.nic	chr1	-	1090	8	ISM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	210	6927	-28	0	internal_fragment	FALSE	canonical	3	863	junction_7	49.856938190329	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAAAGCAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	60137095	60122953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
transcript_19840.known	chr11	-	1454	9	FSM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	188.652085530481	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	8900	False	NA	0	True	AATAAA	-30	NA	69872078	69859049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039_69871389_69872032
transcript_19841.known	chr11	+	1627	8	FSM	ENSMUSG00000018559.17	ENSMUST00000108593.8	1627	8	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	14.8020958251299	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCCTAGACCCTTCTCT	NA	False	NA	NA	False	TTTAAA	-27	NA	69871981	69881427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69872412_69875079_69875147_69875241_69875361_69875559_69875632_69879438_69879556_69879653_69879766_69880307_69880393_69880802
transcript_19845.known	chr11	-	1259	7	FSM	ENSMUSG00000018565.18	ENSMUST00000123701.9	1259	7	0	0	0	0	multi-exon	FALSE	canonical	3	523	junction_1	38.6393581727233	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTGGTAATGCTTA	9889	False	NA	-4	True	AATAAA	-26	NA	69871089	69859053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824
transcript_19846.known	chr11	-	899	7	FSM	ENSMUSG00000018565.18	ENSMUST00000142788.8	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	199.487468278085	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTAATGCTTAAACAAG	9880	False	NA	2	True	AATAAA	-32	NA	69871098	69859047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69870655_69870737_69870824_69870886_69871039
transcript_19847.known	chr11	+	1351	4	FSM	ENSMUSG00000018567.15	ENSMUST00000018711.15	1351	4	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_2	75.6350888587213	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCCTGTGTCATTCCAC	4728	False	NA	16	True	AATAAA	-26	NA	69881968	69885777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284
transcript_19848.known	chr11	+	750	4	FSM	ENSMUSG00000018567.15	ENSMUST00000108592.2	750	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	446.878805345103	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAATTGAATTTGCCCTG	5224	False	NA	5	True	AATAAA	-15	NA	69882464	69885766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69882629_69883190_69883270_69883501_69883527_69885284
transcript_19857.known	chr11	+	2006	5	FSM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_3	63.9193828192982	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2317	False	NA	16	True	AATAAA	-26	NA	69886602	69890835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126_69889959_69890063
transcript_19859.known	chr11	+	1706	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2416	False	NA	16	True	AATAAA	-26	NA	69886701	69890835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
transcript_19861.known	chr11	+	1797	5	FSM	ENSMUSG00000018572.11	ENSMUST00000153684.8	1797	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	234.354832465644	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTCCTTGTCCTATTTG	3531	False	NA	15	True	AATAAA	-25	NA	69887816	69890834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69887886_69888422_69888455_69888571_69888665_69889126_69889959_69890063
transcript_19870.known	chr11	-	2168	20	FSM	ENSMUSG00000018574.15	ENSMUST00000102574.10	2168	20	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_10	16.9960073525513	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGTGAATGTCACTGCTC	NA	False	NA	4	True	AATAAA	-21	NA	69906234	69901008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905618_69905685_69905942_69906022_69906088
transcript_19874.known	chr11	-	2020	19	FSM	ENSMUSG00000018574.15	ENSMUST00000018718.8	2020	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_17	40.1080331229001	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGGGGTGATGGAGT	NA	False	NA	-57	True	NA	NA	NA	69906213	69901069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905942_69906022_69906088
transcript_19882.known	chr11	+	2968	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	1658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAAGCCTCTGGCTCC	7135	False	NA	12	True	AATAAA	-16	NA	69891420	69900937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
transcript_1991.nic	chr1	+	840	5	ISM	ENSMUSG00000073664.12	ENSMUST00000160834.8	15731	55	-125	138142	-125	14288	5prime_fragment	FALSE	canonical	3	9	junction_2	5.58457697592217	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGTGTGAATACATTCCT	NA	False	NA	3	True	NA	NA	NA	60219632	60239345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_60219845_60220621_60220914_60233662_60233755_60234173_60234336_60239263
transcript_19912.known	chr11	+	1417	9	FSM	ENSMUSG00000020888.17	ENSMUST00000130820.8	1417	9	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_4	29.6637404923924	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAACAAATACGT	7361	False	NA	NA	False	NA	NA	NA	69891646	69897787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339
transcript_19922.known	chr11	+	672	5	FSM	ENSMUSG00000040963.16	ENSMUST00000179757.2	672	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.49305018890286	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGACGGAACATCACCC	6990	False	NA	NA	False	NA	NA	NA	69988517	69996682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
transcript_19927.known	chr11	-	2531	4	FSM	ENSMUSG00000044367.8	ENSMUST00000060010.3	2531	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	1.24721912892465	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGATGGTCAAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	70111820	70107614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70108748_70109418_70110157_70111020_70111165_70111304
transcript_19929.known	chr11	-	3366	9	FSM	ENSMUSG00000000317.12	ENSMUST00000000326.12	3366	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.59947894041409	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTTGTGTCCTAGGATT	NA	False	NA	NA	False	AATAAA	-19	NA	70120565	70114953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70116970_70117312_70117451_70117534_70117666_70117734_70117900_70118452_70118578_70118859_70119208_70119313_70119536_70119806_70119998_70120535
transcript_1993.known	chr1	+	2223	13	FSM	ENSMUSG00000049439.14	ENSMUST00000060608.13	2223	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	9.38083151964686	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGATTGTTTTGTTT	NA	False	NA	28	True	AATAAA	-16	NA	60382481	60427219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_60382617_60391279_60391330_60392067_60392235_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
transcript_19932.known	chr11	-	1621	8	FSM	ENSMUSG00000040904.11	ENSMUST00000176268.2	1621	8	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	213.450371806867	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATTTTTATACAGAAAAT	NA	False	NA	-56	True	NA	NA	NA	70130629	70126075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130481
transcript_19943.known	chr11	-	779	3	FSM	ENSMUSG00000093989.2	ENSMUST00000125752.3	779	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	359	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130606	70128949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70129297_70129763_70129841_70130251
transcript_19944.known	chr11	-	611	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_2	4	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130668	70128949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70129297_70129763_70129841_70130481
transcript_19945.known	chr11	-	779	5	FSM	ENSMUSG00000020831.19	ENSMUST00000021181.13	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	106.829303096107	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70126295_70126849_70127038_70127702_70127805_70128356_70128452_70128609
transcript_19946.known	chr11	-	880	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108578.9	880	6	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	133.830340356737	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
transcript_19947.known	chr11	-	778	5	FSM	ENSMUSG00000020831.19	ENSMUST00000102569.10	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	164.364495862093	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70128356_70128452_70128609
transcript_19948.known	chr11	-	659	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108577.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	221.278607692254	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128728	70126033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70126291_70126849_70127038_70128356_70128452_70128609
transcript_19949.known	chr11	-	3001	14	FSM	ENSMUSG00000000320.11	ENSMUST00000000329.9	3001	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	3.422860840198	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGACCAGTTCACCAAG	7402	False	NA	NA	False	AATAAA	-18	NA	70146179	70132282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70133391_70133510_70133682_70133802_70133904_70136686_70136809_70137720_70137891_70138085_70138173_70140872_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
transcript_1995.known	chr1	+	2056	12	FSM	ENSMUSG00000049439.14	ENSMUST00000148443.3	2056	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	29.4898777983562	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGATTGTTTTGTTT	NA	False	NA	28	True	AATAAA	-16	NA	60382481	60427219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_60382617_60391279_60391330_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
transcript_19954.known	chr11	-	2314	8	FSM	ENSMUSG00000000320.11	ENSMUST00000108574.3	2314	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	2.55550625999976	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCAGCCTCCTCTTGTTTC	7414	False	NA	NA	False	NA	NA	NA	70146167	70139788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
transcript_19956.known	chr11	-	2409	14	FSM	ENSMUSG00000018924.7	ENSMUST00000019068.7	2409	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.421325044234743	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAGAGCATCCAGATATT	NA	False	NA	NA	False	AATAAA	-13	NA	70242857	70234977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70235549_70235645_70235814_70235921_70236023_70236355_70236478_70236642_70236813_70236905_70236993_70237912_70238123_70238914_70239059_70240369_70240531_70240729_70240834_70240954_70241078_70241150_70241233_70241539_70241745_70242696
transcript_19985.known	chr11	-	3435	17	FSM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	48.6591701917532	737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGTGCTGCTTTGGCT	NA	False	NA	-27	True	AATAAA	-13	NA	70300854	70283708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
transcript_19993.nic	chr11	-	2872	16	ISM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	-21	1323	-18	-1323	5prime_fragment	FALSE	canonical	3	551	junction_8	45.4630497095046	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAGAAGAAGAGGAGGA	NA	False	NA	-7	True	NA	NA	NA	70300875	70285031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
transcript_19994.nic	chr11	-	3196	16	ISM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	-435	1413	-432	-1413	5prime_fragment	FALSE	canonical	3	551	junction_8	45.4630497095046	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGGAAGAAGATGAAGAAGA	NA	False	NA	29	True	NA	NA	NA	70301289	70285121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
transcript_2.known	ERCC-00003	+	1007	1	FSM	ERCC-00003A	DQ516784	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	363	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAAAG	-30	NA	0	1007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00003_+_0_1000
transcript_20.known	ERCC-00058	+	1120	1	FSM	ERCC-00058A	DQ459418	1120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00058_+_0_1100
transcript_200.known	SIRV6	+	454	3	FSM	SIRV6A	SIRV611	454	3	0	0	0	0	multi-exon	FALSE	canonical	3	2656	junction_1	12443	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGTGTTTATAGTTTA	NA	False	NA	NA	False	NA	NA	NA	1303	1950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_1382_1468_1535_1640
transcript_2000.known	chr1	+	1671	10	FSM	ENSMUSG00000026782.16	ENSMUST00000187709.7	1671	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	51.9553464495364	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCATACCAACATGAACATG	NA	False	NA	NA	False	NA	NA	NA	60448961	60516317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60503687_60503775_60509824_60509999_60515898
transcript_20010.known	chr11	-	562	4	FSM	ENSMUSG00000018921.12	ENSMUST00000135148.2	562	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	310.061284264901	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTCAGATCTTTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	70300857	70293456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70293580_70296452_70296559_70297082_70297148_70300589
transcript_20011.known	chr11	+	1352	16	FSM	ENSMUSG00000060216.16	ENSMUST00000102563.2	1352	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	64.7561580083315	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAAACTTGGCTTGGTC	NA	False	NA	37	True	AATAAA	-43	NA	70323523	70331649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989_70331102_70331581
transcript_20015.known	chr11	+	1777	15	FSM	ENSMUSG00000060216.16	ENSMUST00000108568.10	1777	15	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_13	60.0347263452324	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGTATGTGTTCTG	NA	False	NA	14	True	AATAAA	-14	NA	70323462	70331500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330643_70330732_70330989
transcript_20016.known	chr11	+	1848	15	FSM	ENSMUSG00000060216.16	ENSMUST00000102564.11	1848	15	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_13	22.0579015413562	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGCTATGCCAGTGTTC	NA	False	NA	8	True	AATAAA	-14	NA	70323478	70331620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
transcript_20019.nic	chr11	+	1885	15	NIC	ENSMUSG00000060216.16	novel	1777	15	NA	NA	-80	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	84.118842073799	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGTATGTGTTCTG	NA	False	NA	14	True	AATAAA	-14	NA	70323380	70331500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_70323580_70326341_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330643_70330732_70330989
transcript_20026.nic	chr11	+	2052	14	NIC	ENSMUSG00000060216.16	novel	1777	15	NA	NA	-16	0	intron_retention	FALSE	canonical	3	204	junction_12	20.8457280683171	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGTATGTGTTCTG	NA	False	NA	14	True	AATAAA	-14	NA	70323444	70331500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
transcript_20029.nic	chr11	+	1820	14	NIC	ENSMUSG00000060216.16	novel	1777	15	NA	NA	-105	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	69.6723523816336	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGTATGTGTTCTG	NA	False	NA	14	True	AATAAA	-14	NA	70323355	70331500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_70323580_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
transcript_2003.known	chr1	+	5768	9	FSM	ENSMUSG00000026782.16	ENSMUST00000052332.15	5768	9	0	0	0	0	multi-exon	TRUE	canonical	3	110	junction_7	24.0559244262198	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGTGTCTTGTAGAATC	NA	False	NA	15	True	AATAAA	-17	NA	60448777	60520317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60509824_60509999_60515898
transcript_20052.known	chr11	+	902	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	11	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGAGTCTCTCTCTCGC	NA	False	NA	NA	False	AATAAA	-20	NA	70342744	70344553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70342890_70343033_70343165_70343927
transcript_20054.known	chr11	+	870	2	FSM	ENSMUSG00000018923.14	ENSMUST00000152348.2	870	2	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTACTTGGGAAGTAGAGG	NA	False	NA	33	True	AATAAA	-43	NA	70342757	70344390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70343165_70343927
transcript_20055.known	chr11	-	2699	5	FSM	ENSMUSG00000018920.12	ENSMUST00000019064.9	2699	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	7.17635004720366	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTGACTTCTGCAGACTC	7600	False	NA	NA	False	NA	NA	NA	70350810	70344808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70346271_70346480_70346889_70349570_70349654_70349854_70349994_70350203
transcript_20057.known	chr11	+	798	6	FSM	ENSMUSG00000018286.7	ENSMUST00000018430.7	798	6	0	0	0	0	multi-exon	FALSE	canonical	3	5742	junction_5	304.149305440601	1700	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACGTTTCTGTGTGAAGG	NA	False	NA	23	True	AATAAA	-13	NA	70416211	70418475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417500_70418004_70418150_70418262
transcript_20066.nic	chr11	+	3495	25	NIC	ENSMUSG00000020828.14	novel	875	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	6.19755776271768	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCCTCTTCTTGGAGA	NA	False	NA	2	True	AATAAA	-14	NA	70430889	70448936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_70431035_70431670_70431781_70431888_70432020_70432122_70432266_70432640_70432747_70432826_70432893_70433409_70433469_70433586_70433680_70433768_70433922_70434953_70435104_70442005_70442090_70442211_70442291_70443279_70443391_70443523_70443695_70444160_70444288_70444869_70444989_70445102_70445217_70445404_70445510_70445687_70445777_70445876_70445991_70446157_70446208_70446421_70446557_70446733_70446888_70447833_70447949_70448164
transcript_20067.known	chr11	+	3659	25	FSM	ENSMUSG00000020828.14	ENSMUST00000018429.12	3659	25	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	5.6248456768954	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCCTCTTCTTGGAGA	NA	False	NA	2	True	AATAAA	-14	NA	70431131	70448936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70431441_70431670_70431781_70431888_70432020_70432122_70432266_70432640_70432747_70432826_70432893_70433409_70433469_70433586_70433680_70433768_70433922_70434953_70435104_70442005_70442090_70442211_70442291_70443279_70443391_70443523_70443695_70444160_70444288_70444869_70444989_70445102_70445217_70445404_70445510_70445687_70445777_70445876_70445991_70446157_70446208_70446421_70446557_70446733_70446888_70447833_70447949_70448164
transcript_20078.known	chr11	+	4994	33	FSM	ENSMUSG00000020827.19	ENSMUST00000072237.13	4994	33	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_22	26.9057781607873	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAGATCCTACTATTG	1466	False	NA	NA	False	AATAAA	-23	NA	70453706	70505308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499414_70499526_70499665_70499785_70499991_70500081_70500233_70500258_70500379_70500544_70500906_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
transcript_20081.known	chr11	+	4829	32	FSM	ENSMUSG00000020827.19	ENSMUST00000079244.12	4829	32	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	24.4710961615232	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGATCCTACTATTGT	1602	False	NA	NA	False	AATAAA	-24	NA	70453842	70505309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494761_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499414_70499526_70499665_70499785_70499991_70500081_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
transcript_20082.known	chr11	+	4865	32	FSM	ENSMUSG00000020827.19	ENSMUST00000102559.11	4865	32	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_17	25.4119032798382	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATTTTGAGATCCTACT	1483	False	NA	NA	False	AATAAA	-19	NA	70453723	70505304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70453953_70487993_70488060_70489667_70489725_70489805_70489932_70492439_70492551_70492792_70492884_70493508_70493640_70494090_70494146_70494295_70494375_70494593_70494770_70495009_70495080_70495820_70496032_70496873_70496991_70497745_70497971_70498167_70498342_70498582_70498847_70499166_70499253_70499665_70499785_70499991_70500081_70500233_70500258_70500379_70500544_70500903_70501010_70501091_70501230_70501426_70501536_70502135_70502304_70502411_70502556_70503062_70503198_70503306_70503408_70503491_70503642_70503732_70503893_70503980_70504121_70504454
transcript_2009.nic	chr1	-	2297	14	NIC	ENSMUSG00000026014.16	novel	2241	16	NA	NA	-147	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	4.5573271518765	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTTTAAAGCTTGTTG	NA	False	NA	-5	True	TTTAAA	-4	NA	60606085	60522343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_60522500_60532696_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60564750_60565260_60566542_60566649_60572445_60572566_60605723
transcript_201.known	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_10819_11031_11109_11205
transcript_20115.known	chr11	+	1833	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
transcript_20122.nic	chr11	+	2019	8	ISM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	-109	0	-57	0	intron_retention	FALSE	canonical	3	485	junction_5	20.0173394223863	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9081	False	NA	30	True	AATAAA	-31	NA	70538003	70542247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589
transcript_20127.known	chr11	-	1711	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70537884	70535021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
transcript_20165.known	chr11	+	610	2	FSM	ENSMUSG00000040746.16	ENSMUST00000131071.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTAGGTTGAATCTCCAG	9472	False	NA	NA	False	NA	NA	NA	70538394	70539080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70538779_70538854
transcript_20166.known	chr11	-	531	2	FSM	ENSMUSG00000014606.15	ENSMUST00000157076.2	531	2	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTGATGGTACACCCCC	NA	False	NA	NA	False	AATATA	-26	NA	70537804	70536734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70537055_70537593
transcript_20171.known	chr11	-	724	3	FSM	ENSMUSG00000018293.5	ENSMUST00000178254.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_2	4423	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAAATTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	70545447	70542764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70543048_70543612_70543781_70545174
transcript_20173.known	chr11	-	861	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	0	0	0	0	multi-exon	FALSE	canonical	3	9692	junction_2	172	2700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	70545470	70542675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
transcript_20174.known	chr11	-	608	2	FSM	ENSMUSG00000018293.5	ENSMUST00000108549.2	608	2	0	0	0	0	multi-exon	FALSE	canonical	3	9692	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACCTCTTAAGTCCCTT	NA	False	NA	NA	False	ACTAAA	-6	NA	70545424	70543447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70543806_70545174
transcript_20177.nnic	chr11	+	4028	12	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-3064	0	intron_retention	FALSE	canonical	2	8	junction_1	17.6985781751385	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCATGCTGTGTTCCTTA	4049	False	NA	10	True	AATAAA	-13	NA	70544963	70553336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_70547607_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_20178.nnic	chr11	+	1679	12	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1426	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	16.078320705043	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCATGCTGTGTTCCTTA	5687	False	NA	10	True	AATAAA	-13	NA	70546601	70553336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_70546896_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_20181.known	chr11	+	1564	12	FSM	ENSMUSG00000060600.16	ENSMUST00000108548.8	1564	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	19.1466718079752	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7115	False	NA	13	True	AATAAA	-16	NA	70548029	70553339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70548094_70548585_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_20182.known	chr11	+	1454	12	FSM	ENSMUSG00000060600.16	ENSMUST00000072841.12	1454	12	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	14.3486688414174	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7113	False	NA	13	True	AATAAA	-16	NA	70548027	70553339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70548094_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_20188.nnic	chr11	-	1092	7	NNC	ENSMUSG00000018287.13	novel	1159	7	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	295.073672533187	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	False	NA	-9	True	AATAAA	-33	NA	70560128	70554596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556075_70556191_70560022
transcript_20189.known	chr11	-	1159	7	FSM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_3	39.5179284207392	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	False	NA	-9	True	AATAAA	-33	NA	70560242	70554596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
transcript_20190.known	chr11	-	4460	22	FSM	ENSMUSG00000040712.17	ENSMUST00000119120.2	4460	22	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_14	5.19680697362221	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCTCCGGCCTCTCTCTG	8377	False	NA	-1	True	ATTAAA	-16	NA	70578781	70560289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70561089_70561171_70561247_70561374_70561563_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719_70573874_70574104_70574177_70574715_70574852_70574930_70574999_70576888_70576993_70577172_70577268_70578711
transcript_20191.known	chr11	-	1218	7	FSM	ENSMUSG00000057054.12	ENSMUST00000073625.8	1218	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.61880215351701	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCGAGGTAGTGATGG	NA	False	NA	NA	False	ATTAAA	-21	NA	70590981	70579186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590745
transcript_20192.known	chr11	+	5168	23	FSM	ENSMUSG00000020821.18	ENSMUST00000094499.11	5168	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.80220250923627	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATCAATAAT	NA	False	NA	-27	True	NA	NA	NA	70591386	70621213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70591536_70593197_70593378_70593597_70593732_70594093_70594171_70594524_70594705_70595283_70595350_70595724_70595904_70595995_70596108_70596506_70596585_70596725_70596792_70596878_70596955_70597506_70597586_70597766_70597913_70599267_70599438_70599604_70599685_70599776_70599853_70608244_70608325_70609824_70609920_70614873_70614958_70615647_70615835_70615929_70616003_70616713_70617329_70619027
transcript_20194.known	chr11	+	6684	23	FSM	ENSMUSG00000020821.18	ENSMUST00000102554.8	6684	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.80220250923627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGATGCTTTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	70591373	70622790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70591536_70593271_70593378_70593597_70593732_70594093_70594171_70594524_70594705_70595283_70595350_70595724_70595904_70595995_70596108_70596506_70596585_70596725_70596792_70596878_70596955_70597506_70597586_70597766_70597913_70599267_70599438_70599604_70599685_70599776_70599853_70608244_70608325_70609824_70609920_70614873_70614958_70615647_70615835_70615929_70616003_70616713_70617329_70619027
transcript_20200.known	chr11	+	2061	2	FSM	ENSMUSG00000043602.6	ENSMUST00000060444.6	2061	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCTGGCCTTTCCTT	922	False	NA	18	True	ATTAAA	-26	NA	70655034	70663754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70655376_70662034
transcript_20201.known	chr11	+	5408	18	FSM	ENSMUSG00000020817.17	ENSMUST00000076270.13	5408	18	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_10	23.0000752217816	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAATAAATAAATTTATT	NA	False	NA	NA	False	AATAAA	-18	NA	70735603	70833931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394_70784515_70791297_70791434_70795430_70795610_70799211_70799344_70808140_70808609_70810002_70810108_70811677_70811795_70813968_70814068_70816597_70816739_70825230_70825421_70825952_70826009_70828349_70828449_70830705_70830823_70831207
transcript_20215.known	chr11	-	2389	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATAAATTTTTATTC	NA	False	NA	-29	True	AATAAA	-19	NA	70860780	70833927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
transcript_20217.known	chr11	-	2453	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	132.716744893024	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	False	NA	1	True	AATAAA	-31	NA	70860799	70833897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
transcript_20226.nic	chr11	+	1257	8	ISM	ENSMUSG00000020817.17	ENSMUST00000108533.10	2791	18	-212	32212	-48	14313	5prime_fragment	FALSE	canonical	3	143	junction_4	18.2197470803925	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGATACCGAAGAAGAAGTA	NA	False	NA	NA	False	AAGAAA	-2	NA	70735555	70799260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394_70784515_70791297_70791434_70795430_70795610_70799211
transcript_20227.nic	chr11	+	1187	7	ISM	ENSMUSG00000020817.17	ENSMUST00000108533.10	2791	18	-212	35884	-48	10641	5prime_fragment	FALSE	canonical	3	143	junction_4	17.4968251088273	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAACTAAAGAAGAAAGACCA	NA	False	NA	NA	False	NA	NA	NA	70735555	70795588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394_70784515_70791297_70791434_70795430
transcript_20230.known	chr11	+	1264	5	FSM	ENSMUSG00000020817.17	ENSMUST00000179114.8	1264	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	19.8179211826064	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGCCCTCCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	70735617	70784947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836_70777998_70784394
transcript_20232.nic	chr11	+	751	4	ISM	ENSMUSG00000020817.17	ENSMUST00000179114.8	1264	5	-62	6972	-48	-6972	5prime_fragment	FALSE	canonical	3	169	junction_1	10.4986771653491	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAGAAAATGAAATGAAAA	NA	False	NA	NA	False	AAGAAA	-2	NA	70735555	70777975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_70735835_70765571_70765701_70775590_70775795_70777836
transcript_20238.known	chr11	+	1100	7	FSM	ENSMUSG00000018449.13	ENSMUST00000018593.10	1100	7	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_4	48.3922055248111	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAACTTTCCTGGAGATT	NA	False	NA	45	True	NA	NA	NA	70861038	70868659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865725_70865867_70868483
transcript_20240.known	chr11	+	566	7	FSM	ENSMUSG00000018449.13	ENSMUST00000178822.8	566	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	117.134419459962	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865819_70865867_70868483
transcript_20241.known	chr11	+	519	6	FSM	ENSMUSG00000018449.13	ENSMUST00000167509.2	519	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	118.829962551538	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70868483
transcript_20242.nic	chr11	+	1904	6	NIC	ENSMUSG00000018449.13	novel	1100	7	NA	NA	-69	0	intron_retention	FALSE	canonical	3	224	junction_4	52.6748516846512	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTTGGTGTTCTGATG	NA	False	NA	13	True	ATTAAA	-14	NA	70860969	70868627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70865867_70868483
transcript_20243.known	chr11	+	548	6	FSM	ENSMUSG00000018449.13	ENSMUST00000171254.8	548	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	115.373480488369	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70865725_70865867_70868483
transcript_20246.nic	chr11	+	2374	5	NIC	ENSMUSG00000018449.13	novel	548	6	NA	NA	-651	0	intron_retention	FALSE	canonical	3	39	junction_3	128.657248144051	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTTGGTGTTCTGATG	NA	False	NA	13	True	ATTAAA	-14	NA	70860387	70868627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70865867_70868483
transcript_20249.known	chr11	+	434	4	FSM	ENSMUSG00000018449.13	ENSMUST00000126815.8	434	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	145.669336359975	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTATTAAAGGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	70861305	70864988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894
transcript_20250.known	chr11	+	343	4	FSM	ENSMUSG00000018449.13	ENSMUST00000169965.8	343	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	151.702193641211	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70868483
transcript_20251.nic	chr11	+	2454	4	NIC	ENSMUSG00000018449.13	novel	548	6	NA	NA	-5	0	intron_retention	FALSE	canonical	3	300	junction_3	33.0689515339624	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTTGGTGTTCTGATG	NA	False	NA	13	True	ATTAAA	-14	NA	70861300	70868627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_70861414_70862589_70862761_70863840_70865867_70868483
transcript_20252.known	chr11	-	1175	6	FSM	ENSMUSG00000018446.9	ENSMUST00000078528.7	1175	6	0	0	0	0	multi-exon	FALSE	canonical	3	4814	junction_4	225.05234946563	5849	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTTTCGCCCACATCAG	NA	False	NA	-26	True	AATAAA	-32	NA	70873852	70868661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995_70873147_70873550
transcript_20273.known	chr11	-	5184	12	FSM	ENSMUSG00000040620.16	ENSMUST00000108527.8	5184	12	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	13.0123907891512	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGGTATCCAGCATTTA	NA	False	NA	2	True	ATTAAA	-30	NA	70895263	70874916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70878254_70879892_70879980_70882933_70883138_70883484_70883613_70884435_70884525_70884682_70884843_70885964_70886077_70886713_70886900_70890195_70890367_70890546_70890775_70892344_70892506_70894942
transcript_20286.known	chr11	-	3666	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATCTTGTATTTTTAA	NA	False	NA	-3	True	NA	NA	NA	70910129	70898267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
transcript_20287.known	chr11	-	1466	7	FSM	ENSMUSG00000018442.14	ENSMUST00000171041.8	1466	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	208.810719712056	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTATTTAAGCTTTCG	NA	False	NA	-9	True	AATAAA	-20	NA	70910667	70900758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70910216
transcript_20293.known	chr11	-	629	6	FSM	ENSMUSG00000018442.14	ENSMUST00000018586.6	629	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	222.522268548566	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTGAGGGCCAGCGCCT	NA	False	NA	NA	False	NA	NA	NA	70910095	70901176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70906552_70906627_70909137_70909204_70909969
transcript_20294.known	chr11	+	3003	3	FSM	ENSMUSG00000040599.14	ENSMUST00000048807.12	3003	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	24	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910436	70918197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70911016_70915375_70915538_70915935
transcript_20296.known	chr11	+	344	3	FSM	ENSMUSG00000040599.14	ENSMUST00000133413.8	344	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	44	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCTTCACACCACAGAC	NA	False	NA	NA	False	AATAAA	-42	NA	70910436	70916004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_70910550_70915375_70915538_70915935
transcript_20298.known	chr11	-	1494	2	FSM	ENSMUSG00000018451.8	ENSMUST00000156068.3	1494	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTTGTCCACCAGCTTC	NA	False	NA	1	True	AATAAA	-24	NA	70924339	70922766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_70923236_70923314
transcript_20302.known	chr11	+	2866	9	FSM	ENSMUSG00000020811.17	ENSMUST00000108511.8	2866	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	2.29128784747792	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTCTGCCTCTCT	NA	False	NA	19	True	CATAAA	-32	NA	71641805	71680473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_71642056_71650403_71651093_71657614_71657730_71659454_71659640_71662678_71662801_71674083_71674244_71675094_71675260_71678543_71678745_71679494
transcript_2031.known	chr1	-	1795	10	FSM	ENSMUSG00000040865.16	ENSMUST00000153992.2	1795	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	2.18298696715428	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACACAAGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	63153414	63101322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_63101413_63104862_63104997_63107342_63107453_63113480_63113706_63118111_63118221_63124826_63125558_63132443_63132600_63132798_63132890_63144814_63144919_63153369
transcript_20311.known	chr11	+	1513	6	FSM	ENSMUSG00000020808.4	ENSMUST00000021164.4	1513	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	92.1316449435263	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933280	71938196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937512
transcript_20312.nnic	chr11	+	1127	6	NNC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	-19	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	106.202448182704	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCATGTTTTTAGATATC	NA	False	NA	13	True	AATAAA	-17	NA	71933261	71938195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937916
transcript_20315.nic	chr11	+	1952	5	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	-19	0	intron_retention	TRUE	canonical	3	210	junction_4	14.6116391962025	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933261	71938196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_71933361_71933842_71934164_71935806_71936601_71937165_71937220_71937512
transcript_20328.known	chr11	-	4390	19	FSM	ENSMUSG00000020807.16	ENSMUST00000238653.2	4390	19	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_18	5.57025832235613	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTATTTGAAGTAATT	NA	False	NA	0	True	AATAAA	-22	NA	72098257	72044922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72046265_72049617_72049843_72050225_72050347_72056342_72056425_72057463_72057650_72059541_72059629_72060606_72060686_72066028_72066119_72066312_72066403_72067486_72067607_72069230_72069398_72071228_72071453_72080373_72080585_72082244_72082461_72085385_72085449_72086608_72086716_72089188_72089790_72093237_72093381_72098021
transcript_20330.known	chr11	+	981	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	0	0	0	0	multi-exon	FALSE	canonical	3	1302	junction_3	85.4959388249264	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAACTCAGGCAGTTTTC	NA	False	NA	NA	False	ATTAAA	-29	NA	72098372	72100841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
transcript_20332.nnic	chr11	+	1058	3	NIC	ENSMUSG00000020803.4	novel	981	4	NA	NA	-381	-228	combination_of_known_splicesites	FALSE	canonical	3	23	junction_2	739	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTAAGTTTTTTAACACG	NA	False	NA	16	True	AATAAA	-16	NA	72097991	72100613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_72098595_72099078_72099161_72100240
transcript_20334.known	chr11	-	1161	4	FSM	ENSMUSG00000020801.9	ENSMUST00000021157.9	1161	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	14.0079342596338	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGATTGCTCCACTTTGA	NA	False	NA	-5	True	AATAAA	-15	NA	72106418	72102549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72102904_72104602_72104700_72104963_72105042_72105786
transcript_20335.known	chr11	+	1427	2	FSM	ENSMUSG00000053574.6	ENSMUST00000124762.2	1427	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTCACTTCTTATTC	NA	False	NA	NA	False	AATAAA	-14	NA	72105997	72109270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72106828_72108673
transcript_20336.known	chr11	-	837	3	FSM	ENSMUSG00000020801.9	ENSMUST00000129264.2	837	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	10.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	72105879	72104033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72104700_72104963_72105042_72105786
transcript_20338.nic	chr11	-	3752	13	NIC	ENSMUSG00000020805.15	novel	3329	12	NA	NA	-221	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_12	13.363247692417	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTGCCTGGCCTTCCTGG	NA	False	NA	0	True	AATAAA	-23	NA	72158269	72132814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289_72157411_72157771
transcript_2034.known	chr1	-	1979	10	FSM	ENSMUSG00000040865.16	ENSMUST00000137511.8	1979	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	2.18298696715428	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGACGGCGTGGACCTC	NA	False	NA	NA	False	AAAACA	-7	NA	63153493	63101308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_63101413_63104862_63104997_63107342_63107453_63113480_63113706_63118111_63118221_63124826_63125558_63132443_63132691_63132798_63132890_63144814_63144919_63153369
transcript_20342.known	chr11	-	3111	12	FSM	ENSMUSG00000020805.15	ENSMUST00000208056.2	3111	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	16.0103272456373	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGGAAAGTTCCAGTGT	NA	False	NA	-101	True	NA	NA	NA	72157419	72132915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151158_72152438_72152576_72152848_72152978_72157289
transcript_20343.known	chr11	-	3329	12	FSM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.58196885814471	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTGCCTGGCCTTCCTGG	NA	False	NA	0	True	AATAAA	-23	NA	72157485	72132814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289
transcript_20352.nnic	chr11	+	2189	7	NNC	ENSMUSG00000040483.16	novel	2597	6	NA	NA	-57	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2.92498812913071	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTAGAGCTGTGTCTT	NA	False	NA	3	True	NA	NA	NA	72192397	72204554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_72192536_72194152_72194289_72195491_72195688_72197389_72197479_72199432_72199538_72202781_72202812_72203059
transcript_20353.nnic	chr11	+	2394	7	NNC	ENSMUSG00000040483.16	novel	2597	6	NA	NA	-49	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2.92498812913071	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTAGAGCTGTGTCTT	NA	False	NA	3	True	NA	NA	NA	72192405	72204554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_72192536_72194152_72194289_72195491_72195688_72197389_72197479_72199432_72199751_72202781_72202812_72203059
transcript_20359.nnic	chr11	+	2102	5	NNC	ENSMUSG00000040483.16	novel	2597	6	NA	NA	-42	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4.65698400254929	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTAGAGCTGTGTCTT	NA	False	NA	3	True	NA	NA	NA	72192412	72204554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_72192536_72194152_72194289_72199432_72199751_72202781_72202812_72203059
transcript_20360.known	chr11	+	672	3	FSM	ENSMUSG00000040483.16	ENSMUST00000151440.8	672	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCGGCTATCTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	72192454	72199887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72192536_72194152_72194289_72199432
transcript_20361.known	chr11	-	1397	8	FSM	ENSMUSG00000020799.17	ENSMUST00000108503.9	1397	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	18.5681315754731	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72252699	72235547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310_72248477_72250504_72250712_72252618
transcript_20362.nnic	chr11	-	1010	6	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4481	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	10.6320270880016	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72247641	72235547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72247574
transcript_20363.nic	chr11	-	1231	6	ISM	ENSMUSG00000020799.17	ENSMUST00000108502.8	1403	8	3524	0	3524	0	3prime_fragment	FALSE	canonical	3	33	junction_5	9.09065454189081	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72248598	72235547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310
transcript_20372.nnic	chr11	-	2413	9	NNC	ENSMUSG00000045667.15	novel	2624	8	NA	NA	-8904	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_7	230.188204248176	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTTGAGTGATCATTGT	NA	False	NA	-1	True	GATAAA	-18	NA	72311443	72280939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_72282240_72290699_72290852_72291154_72291273_72292173_72292354_72293250_72293327_72293836_72294077_72294742_72294831_72311055_72311162_72311290
transcript_20378.known	chr11	-	2624	8	FSM	ENSMUSG00000045667.15	ENSMUST00000050226.7	2624	8	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_3	27.0237990350305	1748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTTGAGTGATCATTGT	NA	False	NA	-1	True	GATAAA	-18	NA	72302539	72280939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72282240_72290699_72290852_72291154_72291273_72292173_72292354_72293250_72293327_72293836_72294077_72294742_72294831_72302069
transcript_20387.known	chr11	+	1818	4	FSM	ENSMUSG00000040471.18	ENSMUST00000076443.10	1818	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.942809041582063	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAAGAGTCTGAGTGCC	NA	False	NA	NA	False	AATAAA	-14	NA	72326351	72329226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72326591_72327264_72327468_72327544_72327659_72327964
transcript_20396.known	chr11	+	4358	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	0	0	0	0	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACACTTGGACCTGGTTC	NA	False	NA	19	True	AATAAA	-32	NA	72332180	72342594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
transcript_204.known	SIRV6	-	276	1	FSM	SIRV6B	SIRV617	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTCTACTTGGGCACCT	NA	False	NA	NA	False	NA	NA	NA	1820	1544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_-_1500_1800
transcript_20401.nic	chr11	+	3812	25	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	-346	994	-346	68	5prime_fragment	FALSE	canonical	3	2354	junction_12	207.732383261627	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTCTGGGAGAGGGAC	NA	False	NA	NA	False	NA	NA	NA	72331834	72341600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451
transcript_20414.known	chr11	+	4448	25	FSM	ENSMUSG00000040463.17	ENSMUST00000152894.8	4448	25	0	0	0	0	multi-exon	FALSE	canonical	3	2354	junction_12	208.161057937518	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACACTTGGACCTGGTTC	NA	False	NA	19	True	AATAAA	-32	NA	72332180	72342594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
transcript_20479.known	chr11	-	2080	12	FSM	ENSMUSG00000020798.15	ENSMUST00000092940.13	2080	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	5.71210111723818	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTCAGAGCTTCTTAGAC	NA	False	NA	NA	False	ATTAAA	-24	NA	72441332	72388980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72389301_72390180_72390353_72390463_72390563_72395881_72395948_72420359_72420550_72427353_72427507_72427996_72428146_72429149_72429217_72429860_72430013_72431240_72431378_72436713_72436780_72440823
transcript_2048.nic	chr1	-	2923	20	NIC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	0	0	intron_retention	FALSE	canonical	3	123	junction_19	206.17340683078	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215981	63182754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215586
transcript_20489.nnic	chr11	+	2159	7	NNC	ENSMUSG00000020794.14	novel	3931	7	NA	NA	-110	-1872	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	361.934347944793	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTCAAGTTGTTGGCT	NA	False	NA	NA	False	AATATA	-13	NA	72497998	72575435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_72498462_72553896_72554000_72560859_72560966_72563785_72563884_72568530_72568710_72570194_72570319_72574349
transcript_2049.nic	chr1	-	2967	20	NIC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	-191	0	combination_of_known_junctions	FALSE	canonical	3	163	junction_19	199.298478811329	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63216183	63182754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
transcript_20491.known	chr11	+	3931	7	FSM	ENSMUSG00000020794.14	ENSMUST00000138247.8	3931	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	366.180017963236	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGAGCTATTTTGGTTTT	NA	False	NA	11	True	AATAAA	-20	NA	72498108	72577307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72498462_72536362_72536479_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
transcript_20493.known	chr11	+	3815	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	0	0	0	0	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGAGCTATTTTGGTTTT	NA	False	NA	11	True	AATAAA	-20	NA	72498108	72577307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
transcript_205.known	SIRV6	-	189	1	FSM	SIRV6C	SIRV618	189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTCTAGCTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	2547	2358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_-_2400_2500
transcript_20501.known	chr11	+	8030	25	FSM	ENSMUSG00000020790.15	ENSMUST00000155998.2	8030	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	42.0138659320415	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACTTGGACTAATGTG	NA	False	NA	NA	False	AATAAA	-25	NA	72580831	72662972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72580861_72602982_72603176_72605190_72605310_72613453_72613590_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681_72637780_72640125_72640355_72640905_72641005_72641226_72641381_72642890_72643060_72644425_72644545_72645162_72645320_72646515_72646717_72648118_72648296_72649278_72649427_72650741_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338
transcript_20506.known	chr11	+	2894	4	FSM	ENSMUSG00000020790.15	ENSMUST00000150172.8	2894	4	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	27.3780122645081	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	72580831	72616006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72580861_72602982_72603176_72605190_72605310_72613453
transcript_20507.known	chr11	-	2393	4	FSM	ENSMUSG00000057778.15	ENSMUST00000079681.6	2393	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	4.02768199119819	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCTTTTTTTTCTTTTG	NA	False	NA	0	True	AATAAA	-36	NA	72686682	72668057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72669779_72673473_72673661_72679902_72680044_72686338
transcript_20508.known	chr11	-	2158	4	FSM	ENSMUSG00000057778.15	ENSMUST00000156294.8	2158	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	3.55902608401044	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCACTGTAACTCCCACAT	NA	False	NA	-17	True	AATAAA	-19	NA	72686968	72668074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_72669779_72673473_72673661_72679902_72680044_72686842
transcript_20510.nnic	chr11	+	3624	17	NNC	ENSMUSG00000020785.18	novel	3424	16	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	7.21543484483091	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTATGTCTTCTGCA	NA	False	NA	NA	False	AATAAA	-29	NA	72909813	72932899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_72909954_72910193_72910339_72916362_72916764_72917410_72917459_72917840_72917895_72918255_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928095_72928363_72928452_72928674_72928804_72929237_72929342_72931046
transcript_20512.known	chr11	+	3424	16	FSM	ENSMUSG00000020785.18	ENSMUST00000092937.13	3424	16	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	5.11815939137846	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTATGTCTTCTGCA	NA	False	NA	NA	False	AATAAA	-29	NA	72909868	72932899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72909954_72916362_72916764_72917410_72917459_72917840_72917895_72918255_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928095_72928363_72928452_72928674_72928804_72929237_72929342_72931046
transcript_20513.known	chr11	+	3717	15	FSM	ENSMUSG00000020785.18	ENSMUST00000155720.2	3717	15	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	4.90158241837079	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAAGTCTTTGTA	NA	False	NA	NA	False	AATAAA	-18	NA	72909833	72932888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72909954_72916362_72916764_72917410_72917459_72917840_72917895_72918255_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928452_72928674_72928804_72929237_72929342_72931046
transcript_20514.known	chr11	+	12106	13	FSM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_10	28.6544305280857	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTAAGGCCATGTGGTT	NA	False	NA	4	True	NA	NA	NA	72938608	72980143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
transcript_20525.nic	chr11	+	828	5	ISM	ENSMUSG00000005947.12	ENSMUST00000006101.4	3845	31	47800	0	47800	0	3prime_fragment	FALSE	canonical	3	28	junction_3	3.24037034920393	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029208	73038272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_73029338_73029592_73029689_73031492_73031589_73036366_73036478_73037876
transcript_20526.known	chr11	-	2810	1	FSM	ENSMUSG00000050107.3	ENSMUST00000052140.3	2810	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGAGATTTGGCTTAT	NA	False	NA	-7	True	AATAAA	-17	NA	73029120	73026310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_73026300_73029100
transcript_20527.known	chr11	+	2395	13	FSM	ENSMUSG00000005950.15	ENSMUST00000006104.10	2395	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	3.62476052848859	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTGACCTGTGCCCCA	3368	False	NA	12	True	GATAAA	-22	NA	73051246	73063511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_73051560_73055681_73055833_73056365_73056438_73056968_73057045_73057130_73057228_73057387_73057469_73057738_73057878_73058319_73058454_73058704_73058799_73058914_73058981_73061241_73061325_73061908_73062077_73062590
transcript_20529.known	chr11	-	563	2	FSM	ENSMUSG00000047260.5	ENSMUST00000108480.2	563	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTCTTGCCAGAATTAAC	NA	False	NA	NA	False	TTTAAA	-12	NA	73067828	73067161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_73067578_73067681
transcript_20530.known	chr11	-	1332	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	0	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTGCGCATGGAATTTG	NA	False	NA	-27	True	AATAAA	-25	NA	73067863	73066344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_73067578_73067764
transcript_20533.known	chr11	+	1523	4	FSM	ENSMUSG00000040158.13	ENSMUST00000040687.12	1523	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	3.09120616516523	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTCTTTGTCTGGAAACC	4208	False	NA	NA	False	AGTAAA	-16	NA	73067908	73072978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_73068169_73071214_73071335_73071556_73071635_73071913
transcript_20534.known	chr11	+	2644	3	FSM	ENSMUSG00000040158.13	ENSMUST00000150407.2	2644	3	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATCACTGAGTG	4376	False	NA	NA	False	NA	NA	NA	73068076	73073988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_73068169_73071214_73071335_73071556
transcript_20541.known	chr11	-	2723	12	FSM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_11	20.3534877308514	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCGGAACGTTTACTAG	4465	False	NA	-1	True	ATTAAA	-23	NA	73089868	73074422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73087924_73088079_73089743
transcript_20544.known	chr11	-	2570	11	FSM	ENSMUSG00000005949.10	ENSMUST00000006103.9	2570	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	9.23525852372309	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGGAACGTTTACTAGA	4465	False	NA	0	True	ATTAAA	-24	NA	73089868	73074421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
transcript_20553.known	chr11	-	715	4	FSM	ENSMUSG00000005949.10	ENSMUST00000144658.8	715	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	9.46337971105226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAACATTTTAGGAAATGAT	4486	False	NA	NA	False	NA	NA	NA	73089847	73082136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_73082589_73083880_73083960_73087463_73087544_73089743
transcript_20556.known	chr11	+	2808	7	FSM	ENSMUSG00000005951.14	ENSMUST00000006105.7	2808	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	1.34370962471642	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTTGATGAACACACAC	4992	False	NA	NA	False	AATAAA	-22	NA	73090285	73115337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_73090507_73094747_73094890_73104156_73104341_73104880_73105034_73105790_73105967_73108624_73108826_73113606
transcript_20558.nic	chr11	-	1685	7	NIC	ENSMUSG00000020774.10	novel	1746	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	6.39444203108363	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215462	73195817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73213904_73214058_73215080
transcript_20560.known	chr11	-	1530	6	FSM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	4.1182520563948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215460	73195817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73215080
transcript_20561.known	chr11	+	1274	9	FSM	ENSMUSG00000112920.2	ENSMUST00000092926.11	1274	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.3418742493994	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTATAAAAGTAAAACT	7171	False	NA	NA	False	NA	NA	NA	73220566	73236870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_73220602_73221913_73222021_73224123_73224253_73226835_73226897_73227020_73227117_73231076_73231411_73234562_73234687_73235471_73235570_73236580
transcript_20562.known	chr11	-	6382	26	FSM	ENSMUSG00000038807.20	ENSMUST00000047488.15	6382	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	11.9387771568113	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTAGAGTTCACATTTC	NA	False	NA	-6	True	AATAAA	-15	NA	74501741	74274312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_74278338_74279144_74279184_74279608_74279686_74283045_74283168_74283870_74283989_74284194_74284309_74286604_74286724_74288182_74288321_74296548_74296684_74298136_74298224_74298713_74298786_74303122_74303279_74305216_74305347_74307057_74307159_74313255_74313340_74316007_74316062_74316737_74316817_74326526_74326631_74327749_74327963_74328256_74328290_74329089_74329135_74332575_74332612_74375712_74375798_74458041_74458078_74487707_74487825_74501678
transcript_20567.known	chr11	+	4002	4	FSM	ENSMUSG00000069814.7	ENSMUST00000100866.3	4002	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGAGAGTGCCGTTGCCT	NA	False	NA	24	True	AATAAA	-30	NA	74510430	74532342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_74510673_74520784_74520938_74526066_74526115_74528783
transcript_20570.known	chr11	+	5379	26	FSM	ENSMUSG00000020741.18	ENSMUST00000092915.12	5379	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	69.5319897601097	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCCAGCCTTTCCTGTGT	NA	False	NA	26	True	AATAAA	-20	NA	74540340	74561673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_74540521_74547248_74547452_74547993_74548166_74550011_74550156_74550308_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554609_74554715_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
transcript_20593.known	chr11	-	5803	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGTGGGGTTTTTTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	74615496	74564774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
transcript_20596.known	chr11	-	7165	10	FSM	ENSMUSG00000020745.16	ENSMUST00000156794.2	7165	10	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_4	82.1516213405973	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGTGGGGTTTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	74615144	74564775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
transcript_20599.nic	chr11	-	797	5	ISM	ENSMUSG00000020745.16	ENSMUST00000126341.8	8570	9	-54	15199	-54	-63	5prime_fragment	FALSE	canonical	3	947	junction_1	65.0595880712443	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAATTTACGTCGGGTGG	NA	False	NA	NA	False	ACTAAA	-11	NA	74615215	74579973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
transcript_206.known	SIRV6	+	1969	1	FSM	SIRV6A	SIRV603	1969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	337	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	ATTAAA	-26	NA	8999	10968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_9000_11000
transcript_2060.known	chr1	-	2590	19	FSM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_18	163.056757519704	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTTAAAGTTATACTAT	NA	False	NA	NA	False	NA	NA	NA	63215891	63182893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
transcript_20601.nic	chr11	-	1036	4	ISM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	-24	16291	-24	-1155	5prime_fragment	FALSE	canonical	3	1025	junction_1	37.6651917115348	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACATCTGTTATTAGATT	NA	False	NA	NA	False	AATGAA	-40	NA	74615520	74581065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_74581111_74581351_74581437_74590136_74590347_74614824
transcript_20603.nic	chr11	-	434	2	ISM	ENSMUSG00000020745.16	ENSMUST00000126341.8	8570	9	-43	25518	-43	-10382	5prime_fragment	FALSE	canonical	3	1113	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCATTTTTCCCTCTGTG	NA	False	NA	NA	False	AATGAA	-45	NA	74615204	74590292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_74590347_74614824
transcript_2061.known	chr1	-	2661	19	FSM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_18	130.918608680223	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215981	63182754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
transcript_20614.nnic	chr11	+	1983	11	NNC	ENSMUSG00000010554.15	novel	2073	11	NA	NA	-70211	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.766444926942	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCATATTATAAAATAGCTT	NA	False	NA	NA	False	NA	NA	NA	74591444	74708720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_74591486_74661666_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
transcript_20616.nnic	chr11	+	2223	11	NNC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	-70211	240	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.766444926942	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGCAGCAGTGGATCCA	NA	False	NA	1	True	NA	NA	NA	74591444	74708960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_74591486_74661666_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
transcript_20646.known	chr11	+	2073	11	FSM	ENSMUSG00000010554.15	ENSMUST00000010698.13	2073	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	160.067766898898	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCATATTATAAAATAGCTT	8494	False	NA	NA	False	NA	NA	NA	74661655	74708720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74693718_74693839_74694656_74694727_74696078_74696169_74707695_74707870_74707984
transcript_20649.nnic	chr11	+	4634	7	NNC	ENSMUSG00000000282.13	novel	4590	6	NA	NA	-130301	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.9448309155366	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCAGCATCTGGGTCAT	NA	False	NA	41	True	AATAAA	-32	NA	74591444	74736551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_74591486_74721742_74722228_74727188_74727775_74728256_74728299_74728437_74728550_74732986_74733180_74733376
transcript_20654.known	chr11	+	4590	6	FSM	ENSMUSG00000000282.13	ENSMUST00000000291.9	4590	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	6.55438784326958	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCAGCATCTGGGTCAT	NA	False	NA	41	True	AATAAA	-32	NA	74721745	74736551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_74722228_74727188_74727775_74728256_74728299_74728437_74728550_74732986_74733180_74733376
transcript_20658.known	chr11	-	4873	24	FSM	ENSMUSG00000038351.15	ENSMUST00000081799.6	4873	24	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_12	16.1025776095344	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGAGGCTCTGATGGCT	NA	False	NA	-8	True	AATAAA	-14	NA	74787886	74740091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748876_74749006_74749454_74749601_74749686_74749752_74750571_74750726_74754385_74754521_74755910_74756038_74756186_74756348_74757394_74757463_74757856_74757982_74758436_74758572_74758806_74758953_74759049_74759118_74759402_74759565_74759840_74760004_74782821_74782898_74787650
transcript_20660.known	chr11	-	4743	23	FSM	ENSMUSG00000038351.15	ENSMUST00000057631.12	4743	23	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_12	13.4016928744404	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTCTGATGGCTATTTG	NA	False	NA	-3	True	AATAAA	-19	NA	74787886	74740086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748876_74749006_74749454_74749601_74749686_74749752_74750571_74750726_74755910_74756038_74756186_74756348_74757394_74757463_74757856_74757982_74758436_74758572_74758806_74758953_74759049_74759118_74759402_74759565_74759840_74760004_74782821_74782898_74787650
transcript_20678.known	chr11	+	5848	19	FSM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	11.7104996677826	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCTCTGCTGGTCTATT	NA	False	NA	NA	False	AATAAA	-21	NA	74816648	75055274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_74816830_74819818_74821575_74822402_74822596_74823166_74823278_74825820_74825928_74826184_74826264_74836347_74836459_74836832_74837046_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
transcript_20679.nnic	chr11	+	4131	18	NIC	ENSMUSG00000038290.16	novel	5848	19	NA	NA	-39	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	32.2346500579712	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCTCTGCTGGTCTATT	NA	False	NA	NA	False	AATAAA	-21	NA	74816609	75055274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_74816830_74822402_74822596_74823166_74823278_74825820_74825928_74826184_74826264_74836347_74836459_74836832_74837046_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
transcript_20680.nnic	chr11	+	3310	12	NIC	ENSMUSG00000038290.16	novel	5848	19	NA	NA	-32	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	41.9042592363683	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCTCTGCTGGTCTATT	NA	False	NA	NA	False	AATAAA	-21	NA	74816616	75055274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_74816830_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
transcript_20683.nic	chr11	+	799	2	ISM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	-53	234891	-53	-62649	5prime_fragment	FALSE	canonical	3	122	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGAAAAGGGGGAGGGGT	NA	False	NA	21	True	NA	NA	NA	74816595	74820383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_74816830_74819818
transcript_20684.nnic	chr11	+	3426	16	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-197459	0	intron_retention	FALSE	non_canonical	0	0	junction_1	207.183804600864	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTCTGGATTCTAGTA	NA	False	NA	26	True	AATAAA	-18	NA	74591437	74800168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_74591486_74788914_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
transcript_20691.known	chr11	-	3699	9	FSM	ENSMUSG00000001323.18	ENSMUST00000065211.9	3699	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	25.2140833662459	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACACGATGGTAAGAGA	NA	False	NA	NA	False	AATAAA	-13	NA	74816624	74797184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74810262_74810489_74816444
transcript_20694.known	chr11	-	3183	8	FSM	ENSMUSG00000001323.18	ENSMUST00000121738.8	3183	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	16.4527771987291	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACATCTCATTTATTTGG	NA	False	NA	NA	False	AATAAA	-10	NA	74816774	74797624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74816444
transcript_20699.known	chr11	+	3389	15	FSM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	0	0	0	0	multi-exon	FALSE	canonical	3	655	junction_8	75.3882467968452	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTCTGGATTCTAGTA	NA	False	NA	26	True	AATAAA	-18	NA	74788903	74800168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
transcript_207.known	SIRV6	+	459	5	FSM	SIRV6A	SIRV614	459	5	0	0	0	0	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAGACTGTATCGGAG	NA	False	NA	NA	False	AAAAAG	-17	NA	2516	10815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
transcript_20700.known	chr11	-	3497	2	FSM	ENSMUSG00000043099.6	ENSMUST00000055619.6	3497	2	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGGCTCTCTTCTGCC	6503	False	NA	NA	False	AATAAA	-23	NA	75060345	75055390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75058371_75059828
transcript_20703.known	chr11	-	2139	13	FSM	ENSMUSG00000078789.10	ENSMUST00000044949.11	2139	13	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_12	23.7876893931854	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTTGGTGGAAGTCA	NA	False	NA	53	True	NA	NA	NA	75081345	75068468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081224
transcript_20706.nnic	chr11	-	2100	13	NNC	ENSMUSG00000078789.10	novel	2139	13	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_12	62.59526073647	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTGCTGCCCC	NA	False	NA	0	True	AATAAA	-21	NA	75081304	75068521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081169
transcript_20716.known	chr11	-	745	2	FSM	ENSMUSG00000038268.5	ENSMUST00000123489.2	745	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACACACATAAGCCCAGA	1685	False	NA	-105	True	NA	NA	NA	75069613	75068626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75069214_75069455
transcript_20718.known	chr11	+	3525	2	FSM	ENSMUSG00000045287.7	ENSMUST00000102514.4	3525	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTTTTTTATTTCCTAA	NA	False	NA	8	True	AATAAA	-19	NA	75084608	75158595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75085121_75155582
transcript_20730.known	chr11	-	5077	17	FSM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	165.245638652734	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGTTCTGACTTTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	75239150	75188991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
transcript_20746.known	chr11	-	716	7	FSM	ENSMUSG00000000751.14	ENSMUST00000154894.2	716	7	0	0	0	0	multi-exon	FALSE	canonical	3	1534	junction_2	159.580091350881	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGTGACTTGGGTGTAAA	NA	False	NA	NA	False	GGGGCT	-35	NA	75239121	75206865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
transcript_20748.known	chr11	-	2942	18	FSM	ENSMUSG00000000751.14	ENSMUST00000000767.6	2942	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	554.797565874568	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTCTTTGACTGTAAAG	NA	False	NA	-16	True	AATAAA	-21	NA	75239136	75191175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75230538_75230602_75231115_75231225_75231853_75231933_75232969_75233021_75239051
transcript_20750.nic	chr11	+	3018	12	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	-18	-338	combination_of_known_junctions	FALSE	canonical	3	12	junction_5	20.2051462227893	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTGTCACTGATCTGCAG	NA	False	NA	NA	False	NA	NA	NA	75239302	75296193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897_75280967_75281083_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
transcript_20752.known	chr11	+	3517	11	FSM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	9.20923449587424	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGTATTGGTTTCCTA	NA	False	NA	35	True	AATAAA	-37	NA	75239258	75296531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
transcript_20754.nnic	chr11	+	3020	11	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	-27	-338	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	24.4040980165217	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTGTCACTGATCTGCAG	NA	False	NA	NA	False	NA	NA	NA	75239231	75296193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75281083_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
transcript_20757.nnic	chr11	+	3001	10	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	-29	-338	intron_retention	TRUE	canonical	1	2	junction_2	24.9701055832671	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTGTCACTGATCTGCAG	NA	False	NA	NA	False	NA	NA	NA	75239291	75296193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_75239578_75240494_75240641_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
transcript_20760.known	chr11	+	1172	3	FSM	ENSMUSG00000018809.3	ENSMUST00000157055.2	1172	3	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	8.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	75239320	75273844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75239578_75240494_75240641_75273075
transcript_20761.known	chr11	-	605	4	FSM	ENSMUSG00000000753.16	ENSMUST00000125982.2	605	4	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_3	3.39934634239519	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCGTGAAGTTGCT	5527	False	NA	NA	False	NA	NA	NA	75313378	75306295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75306557_75307055_75307255_75308734_75308823_75313321
transcript_20762.known	chr11	-	6625	10	FSM	ENSMUSG00000045374.19	ENSMUST00000117392.9	6625	10	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_2	4.57043640026736	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTGAGGCTGTGTTGT	3088	False	NA	-4	True	AATAAA	-21	NA	75345264	75331773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75332916_75335080_75335261_75335523_75335670_75336229_75336920_75338689_75338856_75338948_75339115_75339850_75340042_75340171_75340363_75340621_75340730_75341619
transcript_20763.nic	chr11	-	5260	6	ISM	ENSMUSG00000045374.19	ENSMUST00000173320.8	6908	10	-1	6407	-1	816	5prime_fragment	FALSE	canonical	2	11	junction_3	4.04969134626332	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGCTTTGTTTTTGT	2808	False	NA	NA	False	NA	NA	NA	75345544	75338176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_75338856_75338948_75339115_75339850_75340042_75340171_75340363_75340621_75340730_75341619
transcript_20765.known	chr11	+	1752	3	FSM	ENSMUSG00000085148.2	ENSMUST00000149940.2	1752	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAAAATTTTTACTCT	3838	False	NA	8	True	AATAAA	-19	NA	75352364	75357502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75352582_75354518_75354684_75356132
transcript_20766.known	chr11	+	449	2	FSM	ENSMUSG00000085148.2	ENSMUST00000134345.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGGCAGTGGGAAG	3943	False	NA	NA	False	TATAAA	-41	NA	75352469	75354855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75352582_75354518
transcript_20767.known	chr11	+	7442	42	FSM	ENSMUSG00000020850.15	ENSMUST00000018449.11	7442	42	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_5	157.019499238112	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTTCTTGCTGTTA	NA	False	NA	18	True	AATAAA	-15	NA	75377641	75400273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75378018_75378450_75378620_75380567_75380733_75380823_75381043_75381154_75381368_75381466_75381593_75381672_75381779_75382268_75382460_75382584_75382705_75382787_75382978_75383088_75383209_75383322_75383458_75383804_75383935_75384176_75384374_75384639_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
transcript_20771.known	chr11	+	2887	11	FSM	ENSMUSG00000038188.18	ENSMUST00000042808.13	2887	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_9	2.37697286480094	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTAATTTATTTGGGGG	NA	False	NA	NA	False	ATTAAA	-25	NA	75404365	75417408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75404517_75404830_75404890_75405134_75405237_75405991_75406515_75411119_75411339_75411728_75411858_75412777_75412882_75413004_75413123_75414600_75414723_75414816_75414964_75416195
transcript_20774.known	chr11	+	2617	9	FSM	ENSMUSG00000038188.18	ENSMUST00000118243.2	2617	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.21859829739593	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTAATTTATTTGGGGG	NA	False	NA	NA	False	ATTAAA	-25	NA	75404366	75417408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75404517_75404830_75404890_75405134_75405237_75405991_75406515_75411119_75411339_75411728_75411858_75412777_75412882_75413004_75413123_75416195
transcript_20776.known	chr11	+	6891	14	FSM	ENSMUSG00000038178.17	ENSMUST00000042561.14	6891	14	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	10.1858470089601	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTCTGTGGCTTCCATGT	6875	False	NA	NA	False	NA	NA	NA	75422523	75468401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75422568_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
transcript_20777.known	chr11	+	3236	14	FSM	ENSMUSG00000038178.17	ENSMUST00000108433.8	3236	14	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	9.5805522935017	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGACATAGTGGCACACA	6875	False	NA	121	True	AAAAAG	-3	NA	75422523	75464709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75422605_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
transcript_20778.nic	chr11	+	3164	14	NIC	ENSMUSG00000038178.17	novel	3236	14	NA	NA	12	-104	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	10.1858470089601	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATGCCCCTCCTCACGTA	6887	False	NA	17	True	AATAAA	-20	NA	75422535	75464605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_75422649_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
transcript_20779.known	chr11	+	7145	14	FSM	ENSMUSG00000038178.17	ENSMUST00000169547.9	7145	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	7.15095061334898	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACTCCTCTGTGGCTTC	7289	False	NA	NA	False	NA	NA	NA	75422937	75468396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75423241_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
transcript_20781.nnic	chr11	+	2849	10	NNC	ENSMUSG00000038178.17	novel	744	5	NA	NA	-3600	-104	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	12.7143352554372	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATGCCCCTCCTCACGTA	9676	False	NA	17	True	AATAAA	-20	NA	75448046	75464605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_75448387_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
transcript_20782.known	chr11	+	1665	12	FSM	ENSMUSG00000017781.18	ENSMUST00000179445.8	1665	12	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	261.122339207234	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCATCTCTGGTTAATAT	NA	False	NA	11	True	AATAAA	-18	NA	75478944	75517556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75479179_75483014_75483046_75489005_75489155_75494214_75494306_75494306_75494316_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
transcript_20783.known	chr11	+	3761	12	FSM	ENSMUSG00000017781.18	ENSMUST00000143219.8	3761	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	251.085083205404	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACAGTATGGATTCGGGC	NA	False	NA	NA	False	AATAAA	-24	NA	75478922	75519630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75479179_75483014_75483046_75489005_75489155_75494214_75494307_75498932_75498941_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
transcript_20792.known	chr11	+	594	3	FSM	ENSMUSG00000017781.18	ENSMUST00000140841.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	659	junction_1	31.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTTTGAGCTATTTT	NA	False	NA	NA	False	AATAAA	-44	NA	75478984	75489374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75479179_75483014_75483046_75489005
transcript_20798.known	chr11	+	2679	12	FSM	ENSMUSG00000006127.10	ENSMUST00000006286.9	2679	12	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_6	22.5527847321246	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGACTCCTTTGATGGG	5439	False	NA	27	True	TATAAA	-18	NA	75521813	75539697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
transcript_208.known	SIRV6	+	377	4	FSM	SIRV6A	SIRV608	377	4	0	0	0	0	multi-exon	FALSE	canonical	3	18415	junction_1	2118.18355095954	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTATTAGCCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3023	11270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6_+_3165_10724_10819_11031_11109_11205
transcript_20804.nic	chr11	+	3236	11	NIC	ENSMUSG00000006127.10	novel	2679	12	NA	NA	-4	0	intron_retention	FALSE	canonical	3	99	junction_5	23.4682764599363	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTCGTGTGACTCCTTT	5435	False	NA	21	True	TATAAA	-12	NA	75521809	75539691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
transcript_20811.known	chr11	+	2075	3	FSM	ENSMUSG00000006127.10	ENSMUST00000129298.2	2075	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAACAAATAAGAAAAA	5488	False	NA	NA	False	NA	NA	NA	75521862	75526094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75522024_75523894_75524003_75524288
transcript_20812.known	chr11	+	2571	12	FSM	ENSMUSG00000006127.10	ENSMUST00000150857.8	2571	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	41.3619380270723	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTCGTGTGACTCCTTT	5506	False	NA	21	True	TATAAA	-12	NA	75521880	75539691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75522024_75523929_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
transcript_20813.known	chr11	+	4652	32	FSM	ENSMUSG00000017774.20	ENSMUST00000102505.10	4652	32	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	55.4580209849872	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTCTTCCTGTGAGTGT	7837	False	NA	15	True	AATAAA	-19	NA	75541329	75564736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75541591_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
transcript_20814.known	chr11	+	4547	32	FSM	ENSMUSG00000017774.20	ENSMUST00000069057.13	4547	32	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	33.5644192461903	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTCTTCCTGTGAGTGT	8843	False	NA	15	True	AATAAA	-19	NA	75542335	75564736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75542492_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
transcript_20816.known	chr11	+	4718	32	FSM	ENSMUSG00000017774.20	ENSMUST00000108431.3	4718	32	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	44.4739631998939	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGTCTTCCTGTGAGT	NA	False	NA	13	True	AATAAA	-17	NA	75546698	75564734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75547028_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
transcript_20822.known	chr11	+	965	3	FSM	ENSMUSG00000017776.16	ENSMUST00000093115.4	965	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	223.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATTTAAAAAAA	2150	False	NA	NA	False	NA	NA	NA	75570136	75591615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75570491_75583022_75583389_75591370
transcript_20823.known	chr11	+	4290	3	FSM	ENSMUSG00000017776.16	ENSMUST00000108425.8	4290	3	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_2	118.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTATGTTGAATGTCGG	2123	False	NA	NA	False	AATAAA	-17	NA	75570109	75597734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75570491_75583022_75583389_75594191
transcript_20825.known	chr11	+	852	3	FSM	ENSMUSG00000017776.16	ENSMUST00000147718.2	852	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	225.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTGGTGTTTCTGAAG	2381	False	NA	NA	False	NA	NA	NA	75570367	75591563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75570491_75583022_75583559_75591370
transcript_20826.known	chr11	+	3642	3	FSM	ENSMUSG00000017776.16	ENSMUST00000017920.14	3642	3	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_2	120.5	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAATGTTTGGCTTGGTGA	2098	False	NA	10	True	NA	NA	NA	75570084	75596891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75570491_75583022_75583559_75594191
transcript_20846.known	chr11	+	2100	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	0	0	0	0	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	2924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTAACTATGGATCATTT	2991	False	NA	26	True	ATTAAA	-22	NA	75623694	75656671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
transcript_20855.known	chr11	+	599	5	FSM	ENSMUSG00000020849.14	ENSMUST00000134745.8	599	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4641.68485035337	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCAGAATAAAGAAGCGC	3035	False	NA	NA	False	NA	NA	NA	75623738	75655449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646479_75650117_75650255_75655445
transcript_2086.known	chr1	+	1939	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	0	0	0	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	1811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCACAGCAGTTTCAGCTT	NA	False	NA	NA	False	NA	NA	NA	63215983	63219645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
transcript_20867.known	chr11	-	2199	9	FSM	ENSMUSG00000020847.16	ENSMUST00000121287.8	2199	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	5.97390157267426	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGCGCAAGAGTCGTT	NA	False	NA	-10	True	AATAAA	-24	NA	75828564	75721824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75723041_75724227_75724375_75725588_75725703_75745129_75745305_75769774_75769862_75797343_75797474_75799736_75799881_75801775_75801886_75828488
transcript_20868.known	chr11	+	921	2	FSM	ENSMUSG00000053783.6	ENSMUST00000066408.6	921	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGGAAGCCGATGCTT	NA	False	NA	NA	False	AATAAA	-18	NA	75890737	75894395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_75891093_75893829
transcript_20869.known	chr11	-	3512	3	FSM	ENSMUSG00000020846.7	ENSMUST00000021207.7	3512	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGGAATGCGTTTGTTT	7887	False	NA	NA	False	AATAAA	-17	NA	75918608	75910019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75913067_75915773_75915884_75918253
transcript_20873.known	chr11	-	2833	22	FSM	ENSMUSG00000017288.16	ENSMUST00000056601.11	2833	22	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	13.2142642642469	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCATCCCTGAAGCTGG	NA	False	NA	68	True	ATTAAA	-16	NA	76070473	75937051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024_76027141_76029133_76029221_76054623_76054691_76057024_76057075_76065452_76065534_76070238
transcript_20874.known	chr11	-	2645	21	FSM	ENSMUSG00000017288.16	ENSMUST00000094015.11	2645	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	19.6328169145439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTCTTATTTTCTATCT	NA	False	NA	-3	True	ATTAAA	-15	NA	76070443	75937122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024_76027141_76054623_76054691_76057024_76057075_76065452_76065534_76070238
transcript_20876.known	chr11	-	650	2	FSM	ENSMUSG00000017288.16	ENSMUST00000129256.2	650	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTTATGTGTGTATG	NA	False	NA	-9	True	AATAAA	-16	NA	76070464	76067784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76068209_76070238
transcript_2088.known	chr1	+	802	6	FSM	ENSMUSG00000025967.17	ENSMUST00000027108.13	802	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1594.84562262308	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAGTGCACTTAAATAAA	NA	False	NA	-4	True	TTTAAA	-10	NA	63216303	63218781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63216451_63216881_63217036_63217581_63217725_63217990_63218058_63218406_63218533_63218616
transcript_20880.known	chr11	-	4203	9	FSM	ENSMUSG00000017286.16	ENSMUST00000169701.8	4203	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	249.232321338947	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGCCTTTCTCAGAAG	NA	False	NA	-1	True	AATAAA	-22	NA	76134489	76101396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76104750_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
transcript_20881.known	chr11	-	1434	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	76134551	76112335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
transcript_20888.known	chr11	+	962	5	FSM	ENSMUSG00000069808.14	ENSMUST00000129853.8	962	5	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	21.775846711437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTAATTACTCTCAGGGGT	NA	False	NA	NA	False	AAAAAG	-4	NA	76070496	76098999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76070813_76093377_76093462_76096079_76096282_76097953_76098050_76098735
transcript_20889.known	chr11	+	2130	5	FSM	ENSMUSG00000069808.14	ENSMUST00000094014.10	2130	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	6.18465843842649	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTATGTGCCCTGGCG	3406	False	NA	NA	False	ATTAAA	-17	NA	76092840	76100242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76093082_76093377_76093462_76096079_76096282_76097953_76098050_76098735
transcript_20892.known	chr11	+	581	2	FSM	ENSMUSG00000038057.5	ENSMUST00000040806.5	581	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGTGGAGTCTGTGGCA	NA	False	NA	NA	False	AATAAA	-15	NA	76108433	76109492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76108575_76109052
transcript_20893.known	chr11	-	3540	2	FSM	ENSMUSG00000049396.7	ENSMUST00000102500.5	3540	2	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	0	585	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGCCTTTCTCAGAAG	NA	False	NA	-1	True	AATAAA	-22	NA	76108490	76101396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76104750_76108303
transcript_20895.known	chr11	+	1510	4	FSM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	6.53197264742181	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATATGAGTGTTTGCAGG	550	False	NA	23	True	ATTAAA	-31	NA	76134540	76141445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76134913_76135104_76135350_76138172_76138341_76140720
transcript_20896.nic	chr11	+	817	3	ISM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	8	3065	8	2670	5prime_fragment	FALSE	canonical	3	128	junction_1	8	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTTAATTTTCTTTTTAA	558	False	NA	NA	False	NA	NA	NA	76134548	76138380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_76134913_76135104_76135350_76138172
transcript_20898.known	chr11	+	957	2	FSM	ENSMUSG00000038046.5	ENSMUST00000125463.3	957	2	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTTGTTTGTTTGTTTG	571	False	NA	NA	False	AAAAAG	-4	NA	76134561	76135710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76134913_76135104
transcript_209.known	SIRV6001	+	6000	1	FSM	SIRV6001A	SIRV6001	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6001_+_0_6000
transcript_20901.known	chr11	-	2755	8	FSM	ENSMUSG00000020844.7	ENSMUST00000021204.4	2755	8	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_7	17.5905818956785	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGAGTCCTTTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	76289966	76148023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76289526
transcript_20902.nnic	chr11	-	1821	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111597	-760	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	32.3412922387691	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTACTGTGTGCTTAGTT	1325	False	NA	-5	True	NA	NA	NA	76178297	76148783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178031
transcript_20905.known	chr11	+	746	4	FSM	ENSMUSG00000020843.16	ENSMUST00000120699.8	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	120.856204731996	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGAGGTGGTATGGCAGA	NA	False	NA	-49	True	NA	NA	NA	76297777	76305155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76297970_76300467_76300665_76301952_76302026_76304871
transcript_20906.known	chr11	+	2817	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGCTGATTAAGTCCCAC	NA	False	NA	3	True	AATAAA	-15	NA	76297968	76307118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
transcript_20909.known	chr11	+	362	3	FSM	ENSMUSG00000020843.16	ENSMUST00000152183.2	362	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	125	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTTCTCTGCTGCAA	NA	False	NA	NA	False	AGTAAA	-28	NA	76298016	76304908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76298269_76301952_76302026_76304871
transcript_20912.nnic	chr11	-	6217	24	NNC	ENSMUSG00000017631.20	novel	6271	23	NA	NA	-277	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_23	55.4650727135133	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGGTGTGGTTGTT	NA	False	NA	-2	True	AATAAA	-35	NA	76514661	76307560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76513002_76514161_76514490
transcript_20913.known	chr11	-	5394	23	FSM	ENSMUSG00000017631.20	ENSMUST00000072740.13	5394	23	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_22	28.8783427101686	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGGTGTGGTTGTTT	6119	False	NA	-1	True	AATAAA	-36	NA	76462361	76307559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76461856
transcript_20914.known	chr11	-	6271	23	FSM	ENSMUSG00000017631.20	ENSMUST00000238684.2	6271	23	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_22	37.5075749925023	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGGTGTGGTTGTTT	NA	False	NA	-1	True	AATAAA	-36	NA	76514384	76307559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76513002
transcript_20916.known	chr11	-	3534	22	FSM	ENSMUSG00000017631.20	ENSMUST00000108408.9	3534	22	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_21	55.58120043027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGGTGGGCAGCTGTGG	2652	False	NA	NA	False	NA	NA	NA	76386282	76309929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76385082
transcript_20927.known	chr11	+	311	1	FSM	ENSMUSG00000024205.8	ENSMUST00000136893.3	311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCTCCCCCAATAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	76492144	76492455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76492100_76492500
transcript_20931.known	chr11	-	4289	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTCTTTGGTTATCTG	NA	False	NA	NA	False	AATAAA	-16	NA	76654405	76617427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
transcript_20940.known	chr11	-	7946	21	FSM	ENSMUSG00000020841.6	ENSMUST00000021201.6	7946	21	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_17	8.89719056781409	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTTCTTTGTGTGTTGT	NA	False	NA	-6	True	TATAAA	-18	NA	76737844	76669249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76673237_76675212_76675313_76675844_76676031_76677096_76677229_76681652_76681718_76681820_76681917_76682689_76682822_76683561_76683698_76686266_76686463_76688406_76688731_76690614_76690785_76692465_76692609_76693057_76693161_76696801_76696912_76699535_76699704_76702520_76702713_76703207_76703558_76704308_76704479_76705596_76705740_76731213_76731462_76737049
transcript_20945.known	chr11	+	2497	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	30	True	AATAAA	-19	NA	76836329	76878205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
transcript_2095.known	chr1	+	681	5	FSM	ENSMUSG00000025967.17	ENSMUST00000188524.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	1438.5358876302	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216288	63218815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63216451_63217597_63217725_63217990_63218058_63218406_63218533_63218616
transcript_20960.known	chr11	-	3114	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACATCCTGTAAATTTA	NA	False	NA	-5	True	AATAAA	-28	NA	76969261	76935117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
transcript_20964.nic	chr11	-	489	5	ISM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	-2	5036	-2	1307	5prime_fragment	FALSE	canonical	3	222	junction_4	32.322592717788	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGAAGAGAGAGCTGAAGA	NA	False	NA	91	True	TATAAA	-7	NA	76969263	76940153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
transcript_20965.nic	chr11	-	630	5	ISM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	-195	5088	-195	1255	5prime_fragment	FALSE	canonical	3	222	junction_4	32.322592717788	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGAGAATTTGATGATAAAG	NA	False	NA	39	True	AATACA	-22	NA	76969456	76940205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
transcript_20966.nic	chr11	-	383	5	ISM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	-2	5142	-2	1201	5prime_fragment	FALSE	canonical	3	222	junction_4	32.322592717788	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGCAGGAAAAGAGAATGG	NA	False	NA	-15	True	AATATA	-38	NA	76969263	76940259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
transcript_20967.nic	chr11	-	270	4	ISM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	13	6343	13	0	5prime_fragment	FALSE	canonical	3	222	junction_3	31.7210060089875	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAGGAAGAAAACAA	NA	False	NA	NA	False	NA	NA	NA	76969248	76941460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_76941539_76945769_76945827_76967479_76967571_76969204
transcript_20977.known	chr11	+	3512	20	FSM	ENSMUSG00000011877.14	ENSMUST00000037285.10	3512	20	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_7	121.3660245347	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAGGTGGGGCTTAGC	NA	False	NA	30	True	AATAAA	-33	NA	77384387	77398612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77384461_77389790_77389925_77390342_77390456_77390564_77390671_77391173_77391392_77391472_77391568_77391897_77391941_77393654_77393682_77393843_77393893_77394181_77394255_77394746_77394845_77395197_77395310_77395424_77395559_77395693_77396078_77396148_77396203_77396329_77396417_77396505_77396580_77396705_77396889_77397004_77397069_77397221
transcript_20978.known	chr11	+	3476	19	FSM	ENSMUSG00000011877.14	ENSMUST00000100812.4	3476	19	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_15	38.5310921429486	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAGGTGGGGCTTAGC	NA	False	NA	30	True	AATAAA	-33	NA	77384396	77398612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77384461_77389790_77389925_77390342_77390456_77390564_77390671_77391173_77391392_77391472_77391568_77391897_77391941_77393843_77393893_77394181_77394255_77394746_77394845_77395197_77395310_77395424_77395559_77395693_77396078_77396148_77396203_77396329_77396417_77396505_77396580_77396705_77396889_77397004_77397069_77397221
transcript_20984.nnic	chr11	-	4126	21	NNC	ENSMUSG00000017291.14	novel	12409	20	NA	NA	-78	-8424	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_19	10.1975487250613	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCTTAATTAGAAGGGGT	8073	False	NA	NA	False	AATAGA	-34	NA	77498719	77428411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_77429155_77430879_77431063_77432450_77432664_77436114_77436355_77440097_77440302_77441697_77441827_77444498_77444736_77446389_77446525_77450567_77450772_77451079_77451248_77454489_77454572_77456571_77456666_77462432_77462525_77464521_77464636_77466398_77466496_77468148_77468195_77469551_77469654_77470599_77470672_77476098_77476321_77492524_77492588_77498033
transcript_20986.known	chr11	-	12409	20	FSM	ENSMUSG00000017291.14	ENSMUST00000058496.8	12409	20	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_19	12.6460443488519	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGCTCACTTTATTTTT	8151	False	NA	2	True	AATAAA	-19	NA	77498641	77419987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_77429155_77430879_77431063_77432450_77432664_77436114_77436355_77440097_77440302_77441697_77441827_77444498_77444736_77446389_77446525_77450567_77450772_77451079_77451248_77454489_77454572_77456571_77456666_77462432_77462525_77464521_77464636_77466398_77466496_77468148_77468195_77469551_77469654_77470599_77470672_77476098_77476321_77498033
transcript_20995.nnic	chr11	-	2508	16	NNC	ENSMUSG00000017291.14	novel	12409	20	NA	NA	-78	-21745	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_14	10.156552345927	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAATATAAACTTCGCAAA	8073	False	NA	NA	False	AAAAAG	-31	NA	77498719	77441732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_77441827_77444498_77444736_77446389_77446525_77450567_77450772_77451079_77451248_77454489_77454572_77456571_77456666_77462432_77462525_77464521_77464636_77466398_77466496_77468148_77468195_77469551_77469654_77470599_77470672_77476098_77476321_77492524_77492588_77498033
transcript_21.known	ERCC-00059	+	509	1	FSM	ERCC-00059A	DQ668356	509	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00059_+_0_500
transcript_210.known	SIRV6002	+	6000	1	FSM	SIRV6002A	SIRV6002	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6002_+_0_6000
transcript_21007.known	chr11	-	1463	7	FSM	ENSMUSG00000044328.14	ENSMUST00000060417.11	1463	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	13.984117975602	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTGGGAGATTGTCTCT	NA	False	NA	1	True	ATTAAA	-21	NA	77404196	77398924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
transcript_21009.nnic	chr11	-	1398	6	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	14	junction_5	68.0458668840364	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTGGGAGATTGTCTCT	NA	False	NA	1	True	ATTAAA	-21	NA	77404200	77398924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403985
transcript_2101.known	chr1	+	815	2	FSM	ENSMUSG00000025967.17	ENSMUST00000126469.2	815	2	0	0	0	0	multi-exon	FALSE	canonical	3	2982	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTGTTTTCAAGCCTGC	NA	False	NA	NA	False	NA	NA	NA	63216305	63217582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63216451_63216912
transcript_21011.nic	chr11	-	1552	6	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	-19	-9	intron_retention	FALSE	canonical	3	179	junction_5	7.1386273190299	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCGGAGTCGTTGGGAG	NA	False	NA	-8	True	ATTAAA	-12	NA	77404215	77398933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
transcript_21015.known	chr11	+	2662	2	FSM	ENSMUSG00000000686.12	ENSMUST00000094004.5	2662	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTTTGTTTGTTATTTA	NA	False	NA	NA	False	NA	NA	NA	77405946	77410871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77406879_77409141
transcript_21017.nic	chr11	+	607	2	ISM	ENSMUSG00000037857.17	ENSMUST00000100802.11	5158	4	-58	21004	-58	19	5prime_fragment	FALSE	canonical	3	165	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGTATGGACAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	77576922	77582563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_77577334_77582367
transcript_2102.known	chr1	+	691	6	FSM	ENSMUSG00000025967.17	ENSMUST00000135877.8	691	6	0	0	0	0	multi-exon	FALSE	canonical	1	59	junction_1	1289.84206785172	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACGTACAGTCCATGGAT	NA	False	NA	-58	True	NA	NA	NA	63216303	63218727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63216410_63216881_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
transcript_21022.known	chr11	+	7513	42	FSM	ENSMUSG00000000631.21	ENSMUST00000108375.9	7513	42	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_10	31.5068522239413	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAAGTTTCCCTGCCTCTC	NA	False	NA	19	True	AATAAA	-20	NA	77654071	77756806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77654206_77668060_77669141_77708444_77708533_77708724_77708832_77708927_77709105_77709406_77709621_77709736_77709880_77710802_77710904_77711623_77711688_77711867_77712013_77713488_77713501_77714101_77714273_77714587_77714679_77714918_77715112_77715928_77716010_77718361_77718504_77718616_77718777_77720002_77720190_77720445_77720690_77723219_77723330_77727242_77727309_77731506_77731636_77732273_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
transcript_2103.known	chr1	+	462	2	FSM	ENSMUSG00000086730.3	ENSMUST00000141027.2	462	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGCCACATCTATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	63239471	63246773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63239834_63246673
transcript_21040.known	chr11	-	1998	8	FSM	ENSMUSG00000017453.5	ENSMUST00000017597.5	1998	8	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_3	30.9654184996286	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784922	77771440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_77772081_77772326_77772403_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
transcript_21048.nic	chr11	-	2141	7	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	197	0	intron_retention	FALSE	canonical	3	232	junction_1	25.5304828696121	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784725	77771440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_77772081_77772326_77772403_77772943_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
transcript_21050.nic	chr11	-	2615	6	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	264	0	intron_retention	FALSE	canonical	3	232	junction_1	26.8223787162884	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784658	77771440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_77772081_77772326_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
transcript_21061.known	chr11	+	4410	15	FSM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	13.672742137224	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTCTGCCTGTCTGTCC	NA	False	NA	18	True	TATAAA	-22	NA	77873627	77921365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142
transcript_21075.nic	chr11	+	3221	11	ISM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	-191	4347	-143	0	5prime_fragment	FALSE	canonical	3	95	junction_1	13.3356664625357	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGATAAACAACTTTTTGG	NA	False	NA	NA	False	AATAAA	-33	NA	77873436	77917018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710
transcript_21082.nic	chr11	+	1438	5	ISM	ENSMUSG00000037791.16	ENSMUST00000108360.8	3047	11	-143	13022	-143	-12769	5prime_fragment	FALSE	canonical	3	95	junction_1	16.4696690920006	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAACCACAGGGAAGA	NA	False	NA	NA	False	AAGAAA	-1	NA	77873436	77904018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996
transcript_21083.known	chr11	+	1779	5	FSM	ENSMUSG00000020834.18	ENSMUST00000021187.12	1779	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	5.93190525885234	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTGGCTCCCGCCTCTT	NA	False	NA	5	True	AATAAA	-17	NA	77923105	77928692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77923325_77923410_77923530_77924838_77924963_77925100_77925413_77927687
transcript_21086.known	chr11	+	1791	4	FSM	ENSMUSG00000020834.18	ENSMUST00000122342.2	1791	4	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	4.08248290463863	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTCTGGCTCCCGCCTC	NA	False	NA	3	True	AATAAA	-15	NA	77923177	77928690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77923530_77924838_77924963_77925100_77925413_77927687
transcript_21087.known	chr11	+	3047	11	FSM	ENSMUSG00000037791.16	ENSMUST00000108360.8	3047	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	38.2336239454227	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGGGGAGTTTGCCAT	NA	False	NA	NA	False	GATAAA	-14	NA	77873579	77917040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916763
transcript_21092.known	chr11	+	2699	12	FSM	ENSMUSG00000061981.15	ENSMUST00000100784.9	2699	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	138.547303733782	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTTTCATCGTATATTC	NA	False	NA	18	True	AATAAA	-15	NA	77928766	77951257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77928939_77940303_77940386_77944188_77944280_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
transcript_21096.known	chr11	+	2568	11	FSM	ENSMUSG00000061981.15	ENSMUST00000073660.7	2568	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	151.687969199934	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	21	True	AATAAA	-18	NA	77928809	77951260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77928939_77940303_77940386_77944188_77944280_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
transcript_21097.known	chr11	+	2621	11	FSM	ENSMUSG00000061981.15	ENSMUST00000072289.12	2621	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_3	23.4778619128744	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	21	True	AATAAA	-18	NA	77928756	77951260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77928939_77940303_77940386_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
transcript_211.known	SIRV6003	+	6000	1	FSM	SIRV6003A	SIRV6003	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV6003_+_0_6000
transcript_21109.known	chr11	-	2014	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_21119.known	chr11	-	2131	9	FSM	ENSMUSG00000020832.15	ENSMUST00000139731.8	2131	9	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_7	16.6466025062173	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_77965001_77965105_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_21127.known	chr11	+	3258	3	FSM	ENSMUSG00000037750.17	ENSMUST00000073705.12	3258	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	31	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAAATGCCTGCGTGTGT	2598	False	NA	2	True	TTTAAA	-17	NA	77985485	78047526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77985618_78033918_78034041_78044522
transcript_21129.known	chr11	+	2473	3	FSM	ENSMUSG00000037750.17	ENSMUST00000100782.4	2473	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	46.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTTAAAAATGCATTTGG	2646	False	NA	NA	False	ATTAAA	-26	NA	77985533	78046901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_77985618_78033918_78034041_78044634
transcript_21131.known	chr11	+	3358	3	FSM	ENSMUSG00000037750.17	ENSMUST00000155571.2	3358	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	36	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAAATGCCTGCGTGTGT	NA	False	NA	2	True	TTTAAA	-17	NA	78006431	78047526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78006664_78033918_78034041_78044522
transcript_21140.known	chr11	-	2078	7	FSM	ENSMUSG00000017386.11	ENSMUST00000017530.4	2078	7	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_4	31.7525152109596	1148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGCCTGTCTCCTCCCA	NA	False	NA	1	True	NA	NA	NA	78056415	78050225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78051375_78051618_78051775_78051858_78052021_78052112_78052275_78052343_78052449_78053207_78053260_78056123
transcript_21148.known	chr11	-	3223	6	FSM	ENSMUSG00000017386.11	ENSMUST00000149437.8	3223	6	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_3	34.7079241672561	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTGTGGGGTTAACTCC	NA	False	NA	NA	False	AATAAA	-28	NA	78056415	78049324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78051775_78051858_78052021_78052112_78052275_78052343_78052449_78053207_78053260_78056123
transcript_21150.known	chr11	-	925	5	FSM	ENSMUSG00000017386.11	ENSMUST00000148218.2	925	5	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	31.9482002622996	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGATGCCCCTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	78056342	78051618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78051775_78051858_78052021_78052112_78052449_78053207_78053260_78056123
transcript_21156.known	chr11	-	2882	14	FSM	ENSMUSG00000017405.15	ENSMUST00000152611.8	2882	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	9.26148734971841	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6312	False	NA	0	True	AATAAA	-14	NA	78067437	78056931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
transcript_21157.known	chr11	-	2809	15	FSM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_10	13.5103890486136	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6248	False	NA	0	True	AATAAA	-14	NA	78067501	78056931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78061915_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
transcript_21158.nic	chr11	+	1053	5	NIC	ENSMUSG00000019437.18	novel	457	4	NA	NA	-61	1	intron_retention	FALSE	canonical	3	12	junction_1	80.151419201409	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTGAAGTCCTGTTCT	NA	False	NA	NA	False	AATGAA	-2	NA	78068894	78071307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_78069063_78069863_78070048_78070195_78070279_78070365_78070449_78070772
transcript_2116.nnic	chr1	+	1409	6	Fusion	ENSMUSG00000086730.3_ENSMUSG00000027520.17	novel	462	2	NA	NA	-87	8182	multi-exon	FALSE	canonical	3	22	junction_2	8.44748483277715	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAGTATAAATTTAGACAA	NA	False	NA	NA	False	AAAAAG	-4	NA	63239384	63342363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925_63320037_63334074_63334206_63341798
transcript_21161.known	chr11	-	560	5	FSM	ENSMUSG00000058546.9	ENSMUST00000102483.5	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	10927	junction_1	3598.81438810061	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074344
transcript_21162.known	chr11	+	462	4	FSM	ENSMUSG00000019437.18	ENSMUST00000145507.8	462	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	84.0119039184329	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAAGTTCTTCCTACAG	NA	False	NA	NA	False	NA	NA	NA	78068974	78070980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78069063_78070195_78070279_78070365_78070449_78070772
transcript_21163.known	chr11	+	1412	4	FSM	ENSMUSG00000019437.18	ENSMUST00000127587.8	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.2672897060218	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTCTTAATTGCTCAGA	NA	False	NA	52	True	NA	NA	NA	78069510	78071646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78069883_78070195_78070279_78070365_78070449_78070772
transcript_21166.known	chr11	+	2700	4	FSM	ENSMUSG00000019437.18	ENSMUST00000092880.14	2700	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	71.8532455000391	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATTGCTAGAGGTTGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	78069476	78072735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78070048_78070195_78070279_78070365_78070449_78070772
transcript_21169.known	chr11	+	714	3	FSM	ENSMUSG00000019437.18	ENSMUST00000108338.2	714	3	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGTTCCTCAGCTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	78069587	78070701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78069883_78070195_78070279_78070365
transcript_21173.known	chr11	-	588	4	FSM	ENSMUSG00000058546.9	ENSMUST00000127270.2	588	4	0	0	0	0	multi-exon	FALSE	canonical	3	10927	junction_1	3582.37128170713	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTTGTCATTTGTCGC	6470	False	NA	-11	True	CATAAA	-4	NA	78073903	78071757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628
transcript_21175.known	chr11	+	1368	11	FSM	ENSMUSG00000002059.19	ENSMUST00000002128.14	1368	11	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	27.8790243731735	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6025	False	NA	21	True	ATTAAA	-15	NA	78079255	78083014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78079338_78080003_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
transcript_21178.known	chr11	+	1685	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6374	False	NA	21	True	ATTAAA	-15	NA	78079604	78083014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
transcript_21179.known	chr11	+	795	10	FSM	ENSMUSG00000002059.19	ENSMUST00000150941.8	795	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	46.6883547486501	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGTGAGGACTGTCCA	6035	False	NA	NA	False	AAAAAG	-16	NA	78079265	78082664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78079338_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
transcript_21189.known	chr11	+	1359	4	FSM	ENSMUSG00000044122.16	ENSMUST00000108317.3	1359	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.74165738677394	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGCCTGCCTCTCCATCC	NA	False	NA	NA	False	AATAAA	-17	NA	78085559	78096589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78085781_78092637_78092719_78094890_78095024_78095665
transcript_21195.known	chr11	-	6488	37	FSM	ENSMUSG00000002052.7	ENSMUST00000002121.5	6488	37	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_18	43.9224555183955	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTTTATTGTTTTTTTTG	NA	False	NA	-1	True	NA	NA	NA	78136813	78097571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78098596_78098875_78099064_78099677_78099845_78099927_78100006_78100249_78100363_78102622_78102748_78102908_78103023_78103494_78103734_78104092_78104289_78107030_78107172_78108666_78108810_78109993_78110142_78110708_78110917_78111946_78112075_78112935_78113104_78113173_78113312_78113595_78113732_78113979_78114057_78115191_78115310_78115421_78115562_78116132_78116329_78116489_78116645_78116772_78116924_78117005_78117136_78117500_78117600_78117716_78117866_78119454_78119598_78119779_78119870_78120222_78120340_78120991_78121094_78121753_78122028_78122598_78122684_78122843_78123037_78123330_78123408_78123500_78123660_78124370_78124510_78136373
transcript_21204.nic	chr11	-	1408	7	ISM	ENSMUSG00000002052.7	ENSMUST00000002121.5	6488	37	-254	24395	-254	-24113	5prime_fragment	FALSE	canonical	3	256	junction_3	24.3064920454506	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATGAATACGATGAAGA	NA	False	NA	NA	False	NA	NA	NA	78137067	78121966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_78122028_78122598_78122684_78122843_78123037_78123330_78123408_78123500_78123660_78124370_78124510_78136373
transcript_21208.nic	chr11	-	1094	5	ISM	ENSMUSG00000002052.7	ENSMUST00000002121.5	6488	37	-254	25440	-254	-25158	5prime_fragment	FALSE	canonical	3	256	junction_1	20.6079474960511	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGATGATGATGAAGAT	NA	False	NA	NA	False	NA	NA	NA	78137067	78123011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_78123037_78123330_78123408_78123500_78123660_78124370_78124510_78136373
transcript_21209.nnic	chr11	+	1210	4	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	-32	-12	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	99.5199589138893	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTTATTCATTGTGTGG	NA	False	NA	7	True	NA	NA	NA	78136539	78146310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_78136997_78141841_78142039_78145676_78145738_78145815
transcript_21211.nic	chr11	-	1069	4	ISM	ENSMUSG00000002052.7	ENSMUST00000002121.5	6488	37	-254	25759	-254	-25477	5prime_fragment	FALSE	canonical	3	270	junction_1	15.7550697307953	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGCTTTCTTTACCCT	NA	False	NA	NA	False	NA	NA	NA	78137067	78123330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_78123408_78123500_78123660_78124370_78124510_78136373
transcript_21212.known	chr11	+	1268	3	FSM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	4	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78136571	78146322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78136997_78141841_78142039_78145676
transcript_21218.known	chr11	+	7443	39	FSM	ENSMUSG00000010277.8	ENSMUST00000010421.7	7443	39	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_1	88.3718730713483	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCCTTCCCTCCTCA	NA	False	NA	21	True	AGTAAA	-14	NA	78152577	78181449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78152744_78153524_78153655_78154415_78154466_78154737_78154886_78155289_78155409_78156004_78156066_78156398_78156589_78157176_78157301_78157420_78157546_78157761_78157830_78157922_78158069_78158924_78159044_78159151_78159316_78159464_78159724_78160313_78160520_78162116_78163210_78163603_78163796_78163922_78164126_78164266_78164386_78164507_78164729_78165290_78165482_78165613_78165714_78165832_78166036_78167865_78168161_78169872_78170031_78170534_78170742_78173884_78173985_78174925_78175109_78175564_78175687_78176263_78176420_78176500_78176623_78177338_78177520_78178121_78178209_78178509_78178621_78178757_78178894_78178990_78179122_78179766_78179869_78180111_78180247_78180629
transcript_21220.nic	chr11	+	3038	16	ISM	ENSMUSG00000010277.8	ENSMUST00000010421.7	7443	39	-115	18485	-115	-1286	5prime_fragment	FALSE	canonical	3	514	junction_1	41.7727183697686	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGAAATCTACATCCAGC	NA	False	NA	NA	False	NA	NA	NA	78152462	78162964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_78152744_78153524_78153655_78154415_78154466_78154737_78154886_78155289_78155409_78156004_78156066_78156398_78156589_78157176_78157301_78157420_78157546_78157761_78157830_78157922_78158069_78158924_78159044_78159151_78159316_78159464_78159724_78160313_78160520_78162116
transcript_21225.nic	chr11	+	1441	11	ISM	ENSMUSG00000010277.8	ENSMUST00000010421.7	7443	39	-115	23382	-115	-939	5prime_fragment	FALSE	canonical	3	514	junction_1	44.650195968215	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGTCTTAAGTTACCTC	NA	False	NA	NA	False	AAGAAA	-6	NA	78152462	78158067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_78152744_78153524_78153655_78154415_78154466_78154737_78154886_78155289_78155409_78156004_78156066_78156398_78156589_78157176_78157301_78157420_78157546_78157761_78157830_78157922
transcript_21235.known	chr11	+	3887	24	FSM	ENSMUSG00000002055.10	ENSMUST00000045026.4	3887	24	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_10	25.9765053072448	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGTCCACTGAATCTT	2752	False	NA	8	True	AATAAA	-18	NA	78192354	78213283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
transcript_21277.known	chr11	+	2786	9	FSM	ENSMUSG00000017390.16	ENSMUST00000017534.15	2786	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_5	18.6547581061776	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACCGTTTTGTCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	78213793	78218607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78214049_78215215_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760_78216961_78217087
transcript_21281.known	chr11	+	2501	12	FSM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_10	36.2694234084327	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATAACTCGTTCTTGT	NA	False	NA	28	True	NA	NA	NA	78219240	78233608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
transcript_21286.nnic	chr11	+	2343	11	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	3	77	junction_1	151.766300607216	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATAACTCGTTCTTGT	NA	False	NA	28	True	NA	NA	NA	78219258	78233608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_78219335_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
transcript_2129.known	chr1	+	6110	26	FSM	ENSMUSG00000025964.16	ENSMUST00000114107.3	6110	26	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_25	13.3899066464259	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATGTTCTGGATTAGG	NA	False	NA	NA	False	AATAAA	-16	NA	63485369	63635435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045_63612158_63620295_63620387_63631766
transcript_21297.nnic	chr11	+	1156	5	NNC	ENSMUSG00000002058.14	novel	1329	5	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	102.793482283655	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234266	78239990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_78234399_78238043_78238158_78238622_78238726_78238912_78239086_78239356
transcript_21299.known	chr11	+	1371	5	FSM	ENSMUSG00000002058.14	ENSMUST00000108295.8	1371	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	104.920207777148	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234331	78239990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239290
transcript_213.known	SIRV7	-	889	6	FSM	SIRV7A	SIRV708	889	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1573.00102987887	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCCTAAGAGATCGAC	NA	False	NA	NA	False	NA	NA	NA	147957	56037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV7_-_56098_70883_70988_78841_78909_78928_78964_114686_114961_147608
transcript_2130.known	chr1	+	6426	26	FSM	ENSMUSG00000025964.16	ENSMUST00000087374.10	6426	26	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_24	11.498591218058	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATGTTCTGGATTAGG	NA	False	NA	NA	False	AATAAA	-16	NA	63485053	63635435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045_63612158_63624523_63624615_63631766
transcript_21300.known	chr11	+	1329	5	FSM	ENSMUSG00000002058.14	ENSMUST00000002127.14	1329	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_3	19.8557296516648	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234307	78239990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239356
transcript_21301.known	chr11	+	1185	4	FSM	ENSMUSG00000002058.14	ENSMUST00000149161.2	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_2	14.613540144522	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGAGTAGTGCCCCCTT	NA	False	NA	NA	False	NA	NA	NA	78234370	78239722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78234613_78238043_78238158_78238622_78239086_78239356
transcript_21304.known	chr11	-	2412	12	FSM	ENSMUSG00000001095.6	ENSMUST00000001122.6	2412	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	4.88884714899955	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCACCGACCCTTCCTC	NA	False	NA	NA	False	CATAAA	-19	NA	78313043	78287912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78288682_78289116_78289255_78289857_78290020_78290909_78291032_78291301_78291391_78291569_78291789_78293897_78294021_78294139_78294312_78295203_78295404_78295496_78295634_78297635_78297765_78312891
transcript_21305.known	chr11	+	1978	5	FSM	ENSMUSG00000020829.10	ENSMUST00000001126.4	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	12.7549010188241	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGCTTTGGGGCTTTCTG	8337	False	NA	26	True	AGTAAA	-27	NA	78356522	78362771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78356832_78357176_78358030_78359450_78359535_78361520_78361678_78362196
transcript_21306.known	chr11	+	749	4	FSM	ENSMUSG00000020829.10	ENSMUST00000146431.3	749	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	30.8796948747159	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGATACAGAATCTAATCA	8390	False	NA	NA	False	NA	NA	NA	78356575	78362448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78356832_78359450_78359535_78361520_78361678_78362196
transcript_21308.known	chr11	-	4083	9	FSM	ENSMUSG00000050132.14	ENSMUST00000061174.7	4083	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	32.8193445242284	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATGTCTGTCTTCAGTC	NA	False	NA	-2	True	AATACA	-20	NA	78388580	78364116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78365859_78366032_78366155_78373982_78374173_78374259_78374363_78378048_78378285_78378389_78378482_78378741_78378955_78381392_78382012_78387814
transcript_21309.known	chr11	-	2497	4	FSM	ENSMUSG00000050132.14	ENSMUST00000153534.2	2497	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	7.78888096369861	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGCACAAGTCACTACTA	4413	False	NA	76	True	AAGAAA	-19	NA	78374624	78364038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78365859_78366032_78366155_78373982_78374173_78374259
transcript_21310.nnic	chr11	-	1267	6	NNC	ENSMUSG00000051232.14	novel	1347	6	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	208.830649091555	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1660	False	NA	-29	True	AATAAA	-21	NA	78402969	78397880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_78398632_78399144_78399207_78399478_78399522_78400550_78400641_78401173_78401248_78402722
transcript_21311.known	chr11	-	1347	6	FSM	ENSMUSG00000051232.14	ENSMUST00000052566.8	1347	6	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_5	35.6561355169065	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1631	False	NA	-29	True	AATAAA	-21	NA	78402998	78397880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78398632_78399144_78399258_78399478_78399522_78400550_78400641_78401173_78401248_78402722
transcript_21318.known	chr11	+	2054	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGAGTATTGTTCTTAA	1635	False	NA	18	True	ATTAAA	-15	NA	78403018	78413562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
transcript_2132.known	chr1	+	2655	25	FSM	ENSMUSG00000025964.16	ENSMUST00000114103.8	2655	25	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_24	11.7541363877667	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGAATCCTTTTTTTTC	NA	False	NA	10	True	ATTAAA	-15	NA	63485369	63632071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045_63612158_63631766
transcript_21329.known	chr11	-	3768	7	FSM	ENSMUSG00000017615.13	ENSMUST00000108277.3	3768	7	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_6	14.2789666604026	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCTGTTCCCTCCATG	NA	False	NA	14	True	NA	NA	NA	78427158	78413675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853_78421174_78426911
transcript_21333.nnic	chr11	-	2174	7	NNC	ENSMUSG00000017615.13	novel	3768	7	NA	NA	49	-1457	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_4	55.9871016891887	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGACTGACCAGCTTTGGC	NA	False	NA	NA	False	NA	NA	NA	78427048	78415132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419922_78420066_78420853_78421174_78426911
transcript_21340.known	chr11	+	735	6	FSM	ENSMUSG00000001105.16	ENSMUST00000050366.15	735	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	183.589760063027	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTTTGTGTAAAGTAGA	NA	False	NA	-73	True	NA	NA	NA	78427253	78432202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78427403_78429335_78429565_78429637_78429789_78430785_78430872_78431720_78431825_78432186
transcript_21341.known	chr11	+	1141	6	FSM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	100.921751867474	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGTGTGCATTATTT	NA	False	NA	24	True	AATAAA	-33	NA	78427186	78432563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78431825_78432186
transcript_21343.known	chr11	+	1167	5	FSM	ENSMUSG00000001105.16	ENSMUST00000137120.8	1167	5	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	109.732344821388	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCAC	NA	False	NA	36	True	AATGAA	-43	NA	78427270	78432311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720
transcript_21345.known	chr11	+	582	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCACCCCA	NA	False	NA	40	True	NA	NA	NA	78427268	78432315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
transcript_21347.nic	chr11	+	2123	4	ISM	ENSMUSG00000001105.16	ENSMUST00000137120.8	1167	5	-91	-16	-7	12	intron_retention	FALSE	canonical	3	238	junction_1	112.395136312327	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCACCCCAACCAAAAAAACA	NA	False	NA	52	True	NA	NA	NA	78427179	78432327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785
transcript_21348.known	chr11	+	909	4	FSM	ENSMUSG00000001105.16	ENSMUST00000152016.2	909	4	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	104.521130240094	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGCA	NA	False	NA	35	True	AATGAA	-42	NA	78427298	78432310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720
transcript_21350.known	chr11	-	1375	3	FSM	ENSMUSG00000037278.10	ENSMUST00000103242.5	1375	3	0	0	0	0	multi-exon	TRUE	canonical	3	1037	junction_2	9	471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTGTTGTGTGGAT	NA	False	NA	-7	True	AATAAA	-23	NA	78441603	78432642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78433623_78434311_78434457_78441353
transcript_21353.known	chr11	-	4444	11	FSM	ENSMUSG00000017376.16	ENSMUST00000142739.8	4444	11	0	0	0	0	multi-exon	TRUE	canonical	3	79	junction_6	8.57962703152066	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTCGCTGTCTTATTTCC	NA	False	NA	-1	True	ATTAAA	-19	NA	78588199	78457993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78459802_78462296_78462391_78463058_78463258_78465666_78465754_78474148_78474251_78477694_78477905_78480130_78480217_78481708_78481816_78509100_78509157_78517402_78517533_78586634
transcript_2136.known	chr1	+	2889	24	FSM	ENSMUSG00000025964.16	ENSMUST00000182642.8	2889	24	0	0	0	0	multi-exon	TRUE	canonical	2	25	junction_12	8.88489723439638	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGTTTCTTCTCTGCC	NA	False	NA	NA	False	AGTAAA	-17	NA	63485049	63612376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63485572_63486886_63487108_63516837_63516915_63554735_63554800_63567916_63568000_63569393_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045
transcript_21362.nic	chr11	-	2460	8	ISM	ENSMUSG00000017376.16	ENSMUST00000142739.8	4444	11	-117	7673	-117	-7427	5prime_fragment	FALSE	canonical	3	79	junction_3	6.99854212223765	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTACTGCTAACTTTTA	NA	False	NA	NA	False	NA	NA	NA	78588316	78465666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_78465754_78474148_78474251_78477694_78477905_78480130_78480217_78481708_78481816_78509100_78509157_78517402_78517533_78586634
transcript_21363.known	chr11	-	1224	1	FSM	ENSMUSG00000049489.6	ENSMUST00000059468.6	1224	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTCTGCCTTATGGTA	6595	False	NA	-2	True	AATAAA	-37	NA	78642555	78641331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78641300_78642600
transcript_21364.known	chr11	+	8035	4	FSM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	44.0782133132559	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACAGCTGGGTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	78717409	78737696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78717463_78726843_78726985_78728915_78729009_78729948
transcript_21367.known	chr11	+	341	3	FSM	ENSMUSG00000072640.12	ENSMUST00000141321.2	341	3	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	33	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACAGTTGAAAACAGAGGC	NA	False	NA	NA	False	NA	NA	NA	78717429	78729082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_78717463_78726843_78726985_78728915
transcript_21370.known	chr11	-	1586	11	FSM	ENSMUSG00000001123.16	ENSMUST00000108269.10	1586	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	7.48398289682706	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGTGAGATGGCTGGC	NA	False	NA	-2	True	AATAAA	-24	NA	78875750	78853804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78860539_78860633_78862142_78862254_78863813_78864016_78867438_78867528_78875603
transcript_21372.known	chr11	-	1520	10	FSM	ENSMUSG00000001123.16	ENSMUST00000108268.10	1520	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	3.82970843102535	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGATGGCTGGCTTATT	NA	False	NA	3	True	AATAAA	-29	NA	78875772	78853799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78862142_78862254_78863813_78864016_78867438_78867528_78875603
transcript_21374.nnic	chr11	-	3221	20	NIC	ENSMUSG00000018334.19	novel	2748	13	NA	NA	-207	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	12.4279641787707	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAAGAGTGGCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	79037440	78907861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_78908163_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78921906_78921949_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78934021_78934027_78935670_78936095_78938122_78938271_78965171_78965313_79036880
transcript_21375.known	chr11	-	5495	19	FSM	ENSMUSG00000018334.19	ENSMUST00000018478.11	5495	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_14	11.430412109266	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGACTCCTGTTTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	79037233	78904265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_78907090_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78934021_78934027_78935670_78936095_78938122_78938271_78965171_78965313_79036880
transcript_21380.nic	chr11	-	3107	19	NIC	ENSMUSG00000018334.19	novel	2748	13	NA	NA	-135	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	11.3016987688457	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAAGAGTGGCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	79037368	78907861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_78908163_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78934021_78934027_78935670_78936095_78938122_78938271_78965171_78965313_79036880
transcript_21385.nnic	chr11	-	2383	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-51	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.950895457782	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGCCGATATTTCTTT	924	False	NA	-21	True	ATTAAA	-15	NA	79145548	79130210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_79130437_79130567_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_21387.nnic	chr11	-	2404	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-51	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.950895457782	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATTGCCGATATTTCTT	924	False	NA	-22	True	ATTAAA	-14	NA	79145548	79130211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_79130459_79130567_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_21394.nic	chr11	-	2687	10	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	142.650916403006	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	924	False	NA	-24	True	ATTAAA	-12	NA	79145548	79130213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_21397.known	chr11	-	2476	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTCATGGGTTGCATT	975	False	NA	-8	True	ATTAAA	-28	NA	79145497	79130197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_21399.nic	chr11	-	3930	9	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-51	0	intron_retention	FALSE	canonical	3	190	junction_4	93.9730679503442	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	924	False	NA	-24	True	ATTAAA	-12	NA	79145548	79130213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_214.known	SIRV7	-	2498	5	FSM	SIRV7A	SIRV703	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	147918	1000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
transcript_2140.known	chr1	+	3507	1	FSM	ENSMUSG00000025964.16	ENSMUST00000185616.2	3507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	63576125	63579632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63576100_63579600
transcript_21407.known	chr11	+	7156	15	FSM	ENSMUSG00000017639.14	ENSMUST00000017783.13	7156	15	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	43.0135835213359	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGAACTTCTGTGGG	NA	False	NA	11	True	AATAAA	-22	NA	79482037	79588849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_79482261_79510454_79510543_79511292_79511382_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
transcript_21412.nic	chr11	+	3138	13	NIC	ENSMUSG00000017639.14	novel	677	3	NA	NA	-99	-4012	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	20.8706332758097	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTTCAGTTTGTTTTCT	NA	False	NA	18	True	TATAAA	-18	NA	79551288	79584837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_79551683_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
transcript_21413.nic	chr11	+	7088	13	NIC	ENSMUSG00000017639.14	novel	677	3	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	20.8706332758097	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGAACTTCTGTGGG	NA	False	NA	11	True	AATAAA	-22	NA	79551350	79588849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_79551683_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
transcript_21414.nnic	chr11	+	3069	13	NNC	ENSMUSG00000017639.14	novel	677	3	NA	NA	-99	-4012	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	29.6014029322185	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTTCAGTTTGTTTTCT	NA	False	NA	18	True	TATAAA	-18	NA	79551288	79584837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_79551683_79571613_79571838_79574235_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
transcript_21421.known	chr11	-	3877	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGAGAATGTTAATCTT	NA	False	NA	-14	True	NA	NA	NA	79853216	79824778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
transcript_21432.known	chr11	+	4373	16	FSM	ENSMUSG00000017548.16	ENSMUST00000017692.15	4373	16	0	0	0	0	multi-exon	FALSE	canonical	3	1594	junction_3	192.466747488726	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTCTGCATTGTTAT	NA	False	NA	37	True	TATAAA	-22	NA	79883931	79924949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_79884426_79886442_79886490_79886570_79886636_79889882_79889952_79898338_79898389_79901383_79901470_79904189_79904422_79905968_79906063_79910504_79910611_79912917_79913096_79915735_79915828_79915993_79916138_79916622_79916781_79919973_79920173_79920832_79920913_79922670
transcript_2144.known	chr1	+	4486	12	FSM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_4	54.5943720043143	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTACAGTTTGATACTT	NA	False	NA	NA	False	NA	NA	NA	63769772	63793814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
transcript_21444.known	chr11	+	4303	15	FSM	ENSMUSG00000017548.16	ENSMUST00000163272.2	4303	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	508.713027037397	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATGGTCTGCATTGTTA	NA	False	NA	36	True	TATAAA	-21	NA	79883931	79924948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_79884426_79886442_79886490_79886570_79886636_79898338_79898389_79901383_79901470_79904189_79904422_79905968_79906063_79910504_79910611_79912917_79913096_79915735_79915828_79915993_79916138_79916622_79916781_79919973_79920173_79920832_79920913_79922670
transcript_21454.nic	chr11	+	1672	11	ISM	ENSMUSG00000017548.16	ENSMUST00000017692.15	4373	16	-205	9168	-205	-7046	5prime_fragment	FALSE	canonical	3	1594	junction_3	140.722741587847	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATAATTCAAATGAAAGTC	NA	False	NA	NA	False	AAGAAA	-7	NA	79883726	79915781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_79884426_79886442_79886490_79886570_79886636_79889882_79889952_79898338_79898389_79901383_79901470_79904189_79904422_79905968_79906063_79910504_79910611_79912917_79913096_79915735
transcript_21464.nic	chr11	+	1118	8	ISM	ENSMUSG00000017548.16	ENSMUST00000017692.15	4373	16	-43	18949	-43	1517	5prime_fragment	FALSE	canonical	3	1594	junction_3	84.9532884854365	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAATCGCGAAGATGGAGA	NA	False	NA	NA	False	AAGAAA	-2	NA	79883888	79906000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_79884426_79886442_79886490_79886570_79886636_79889882_79889952_79898338_79898389_79901383_79901470_79904189_79904422_79905968
transcript_21470.nic	chr11	+	1004	6	ISM	ENSMUSG00000017548.16	ENSMUST00000017692.15	4373	16	-263	23550	-263	-3014	5prime_fragment	FALSE	canonical	3	1594	junction_3	79.9084476135033	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCAGAAAATGAACAAAATT	NA	False	NA	NA	False	NA	NA	NA	79883668	79901399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_79884426_79886442_79886490_79886570_79886636_79889882_79889952_79898338_79898389_79901383
transcript_21471.nic	chr11	+	918	5	ISM	ENSMUSG00000017548.16	ENSMUST00000017692.15	4373	16	-195	26563	-195	-6027	5prime_fragment	FALSE	canonical	3	1594	junction_3	69.3289261419792	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTAAGTACTAGAACTGAA	NA	False	NA	NA	False	NA	NA	NA	79883736	79898386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_79884426_79886442_79886490_79886570_79886636_79889882_79889952_79898338
transcript_21480.known	chr11	-	2396	8	FSM	ENSMUSG00000017561.17	ENSMUST00000061283.15	2396	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	192.168081190846	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTTTGTGGTTTTTTGT	4488	False	NA	-3	True	AATAAA	-20	NA	79971817	79937318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
transcript_21486.known	chr11	-	2230	7	FSM	ENSMUSG00000017561.17	ENSMUST00000103233.10	2230	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	206.037820152838	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTTTGTGGTTTTTTGT	4541	False	NA	-3	True	AATAAA	-20	NA	79971764	79937318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_79938564_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
transcript_21487.known	chr11	-	1138	7	FSM	ENSMUSG00000017561.17	ENSMUST00000178893.8	1138	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	257.519848210235	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGAAGGGCTTGGCTTT	4550	False	NA	NA	False	NA	NA	NA	79971755	79938306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79971609
transcript_21491.known	chr11	-	436	4	FSM	ENSMUSG00000017561.17	ENSMUST00000179855.2	436	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	246.669819799667	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACATAGTGAAAGACCACA	4618	False	NA	NA	False	NA	NA	NA	79971687	79950137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_79950204_79950923_79951012_79955017_79955226_79971613
transcript_21492.known	chr11	-	1871	2	FSM	ENSMUSG00000017561.17	ENSMUST00000178280.2	1871	2	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4541	False	NA	NA	False	NA	NA	NA	79971764	79953509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_79955226_79971609
transcript_21493.known	chr11	+	7266	23	FSM	ENSMUSG00000017550.15	ENSMUST00000108239.7	7266	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_12	23.2130360212169	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTATGGTTTTTTTGTT	5999	False	NA	28	True	ATTAAA	-23	NA	79980225	80026620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_79980663_79984980_79986849_79988778_79988876_79991139_79991302_79992607_79992735_79994085_79994168_79997079_79997265_79999308_79999464_80000189_80000350_80000772_80000962_80002300_80002398_80003574_80003655_80003900_80004041_80004981_80005133_80009790_80009968_80010292_80010430_80011507_80011602_80014892_80014958_80018082_80018264_80022029_80022209_80023290_80024133_80024854_80025014_80025118
transcript_21495.nic	chr11	+	3381	10	ISM	ENSMUSG00000017550.15	ENSMUST00000017694.7	7272	23	-23	25760	-23	1523	5prime_fragment	FALSE	canonical	3	77	junction_5	13.9133118599987	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGACAAAATGAATATTCAG	5976	False	NA	NA	False	AAAAAG	-4	NA	79980202	80000857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_79980663_79984980_79986849_79988778_79988876_79991139_79991302_79992607_79992735_79994085_79994168_79997079_79997265_79999308_79999464_80000189_80000350_80000772
transcript_21497.nic	chr11	+	2445	4	ISM	ENSMUSG00000017550.15	ENSMUST00000017694.7	7272	23	-23	35458	-23	-8175	5prime_fragment	FALSE	canonical	3	79	junction_3	9.67241208569794	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATCAAAAGCAAAAGAAC	5976	False	NA	NA	False	NA	NA	NA	79980202	79991159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_79980663_79984980_79986849_79988778_79988876_79991139
transcript_21498.nic	chr11	+	2362	3	ISM	ENSMUSG00000017550.15	ENSMUST00000017694.7	7272	23	-23	37805	-23	-10522	5prime_fragment	FALSE	canonical	3	99	junction_2	0.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAAGAAAAGTTCTAAGAA	5976	False	NA	NA	False	AATGAA	-29	NA	79980202	79988812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_79980663_79984980_79986849_79988778
transcript_21504.nic	chr11	+	1821	2	ISM	ENSMUSG00000017550.15	ENSMUST00000017694.7	7272	23	-23	40276	-23	-12993	5prime_fragment	FALSE	canonical	3	100	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGTAAGAAAACTAGGACTA	5976	False	NA	NA	False	AATAAA	-3	NA	79980202	79986341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_79980663_79984980
transcript_21505.nic	chr11	+	1883	2	ISM	ENSMUSG00000017550.15	ENSMUST00000017694.7	7272	23	-23	40214	-23	-12931	5prime_fragment	FALSE	canonical	3	100	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTTTTCCTTAAAAGAT	5976	False	NA	NA	False	AAGAAA	-19	NA	79980202	79986403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_79980663_79984980
transcript_2151.known	chr1	+	2613	11	FSM	ENSMUSG00000025962.16	ENSMUST00000128621.8	2613	11	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	49.2621558602544	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGTTGTCATTGGTA	NA	False	NA	78	True	NA	NA	NA	63769801	63791697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
transcript_21513.known	chr11	-	1309	4	FSM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_2	2.16024689946929	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80033001	80027503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_80028106_80028743_80028894_80030691_80031150_80032902
transcript_21514.nic	chr11	-	1864	4	NIC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	-308	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	108.206592528675	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80033309	80027503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_80028106_80028743_80028894_80030691_80031397_80032902
transcript_21521.known	chr11	+	1785	11	FSM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	5.38609320379809	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAACAACAAAAACTACAG	NA	False	NA	NA	False	NA	NA	NA	80044930	80069784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871_80068101_80069221
transcript_21523.nic	chr11	+	2109	10	ISM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	-58	855	-58	-855	5prime_fragment	FALSE	canonical	3	12	junction_2	3.01027048536535	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAACCCACAACTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	80044872	80068929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871
transcript_21524.nic	chr11	+	2846	10	ISM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	-58	118	-58	-118	intron_retention	FALSE	canonical	3	12	junction_2	3.01027048536535	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCACTCAGGAGGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	80044872	80069666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871
transcript_21525.nic	chr11	+	2953	10	ISM	ENSMUSG00000020709.16	ENSMUST00000021050.14	1785	11	-58	11	-58	-11	intron_retention	FALSE	canonical	3	12	junction_2	3.01027048536535	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAGCAAGCAAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	80044872	80069773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_80045136_80045815_80045947_80047770_80047863_80050988_80051069_80052973_80053087_80056498_80056646_80061503_80061588_80064913_80064977_80066881_80066960_80067871
transcript_21527.known	chr11	+	1984	5	FSM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	3.96074487943871	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074676	80090583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80075082_80080049_80080194_80084711_80084875_80087698_80087774_80089386
transcript_21529.nnic	chr11	+	1842	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	17.6131264181639	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074674	80090583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_80075082_80084711_80084875_80087698_80087774_80089386
transcript_21533.known	chr11	+	3297	21	FSM	ENSMUSG00000017686.18	ENSMUST00000077451.14	3297	21	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_19	176.261425161605	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGGTTTTTTGTCTTC	NA	False	NA	9	True	AATAAA	-20	NA	80099844	80157638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80148339_80148463_80156567
transcript_21538.known	chr11	+	3029	20	FSM	ENSMUSG00000017686.18	ENSMUST00000017831.16	3029	20	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_18	134.011803341732	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCTTTTCAAGTATTTA	NA	False	NA	34	True	AATAAA	-45	NA	80099944	80157593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80156567
transcript_21539.known	chr11	+	4260	20	FSM	ENSMUSG00000017686.18	ENSMUST00000055056.16	4260	20	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_18	152.933077899418	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCACTGTGCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	80099880	80158733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80148339_80148463_80156567
transcript_21545.known	chr11	+	3687	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_18	65.0695971182841	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACACTTTTCAAAGACAAC	NA	False	NA	NA	False	AATAAA	-13	NA	80099909	80158312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
transcript_21559.known	chr11	+	3736	9	FSM	ENSMUSG00000017692.9	ENSMUST00000017836.8	3736	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	1.93649167310371	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGGGAGTGACCTCAAGG	7825	False	NA	NA	False	ATTAAA	-23	NA	80191737	80246781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80192098_80193489_80193514_80210383_80210543_80214184_80214410_80221382_80221532_80222620_80222734_80228312_80228414_80237651_80237713_80244237
transcript_21562.known	chr11	-	4554	10	FSM	ENSMUSG00000057181.16	ENSMUST00000103225.11	4554	10	0	0	0	0	multi-exon	FALSE	canonical	2	53	junction_6	17.0105268787113	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGGCTTAAATAGTGT	NA	False	NA	NA	False	TTTAAA	-3	NA	80268860	80251318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_80254845_80255661_80255766_80258887_80259025_80259353_80259419_80261156_80261277_80264465_80264524_80264899_80265044_80266332_80266459_80267628_80267710_80268667
transcript_2157.known	chr1	-	7662	4	FSM	ENSMUSG00000025959.14	ENSMUST00000114086.8	7662	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	3.85861230093008	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCACTGTGTTTCCCCTC	NA	False	NA	-5	True	AATAAA	-27	NA	64160650	64068605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_64074924_64081472_64081597_64117865_64118494_64160058
transcript_21591.known	chr11	+	1562	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGGTTTGGAGATTAA	NA	False	NA	NA	False	NA	NA	NA	80274222	80286392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
transcript_21594.known	chr11	+	2245	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274128	80287074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
transcript_21596.known	chr11	+	2311	11	FSM	ENSMUSG00000017421.19	ENSMUST00000165565.8	2311	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	381.677992553933	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTTGATACATGATTG	NA	False	NA	127	True	AATAAA	-15	NA	80274104	80287071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
transcript_216.known	SIRV7	-	2462	5	FSM	SIRV7A	SIRV705	2462	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	TATAAA	-17	NA	147925	1005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
transcript_21604.known	chr11	+	2152	9	FSM	ENSMUSG00000017421.19	ENSMUST00000108216.8	2152	9	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_8	245.265035217008	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTCAGGCAGCTGTCCAA	NA	False	NA	NA	False	AATAAA	-16	NA	80274156	80285109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909
transcript_2161.nnic	chr1	-	1010	4	NIC	ENSMUSG00000025959.14	novel	7662	4	NA	NA	-73	-6214	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.24264068711928	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAAGAACAAAACACCGC	NA	False	NA	NA	False	NA	NA	NA	64161514	64074819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_64074924_64081472_64081597_64117865_64118494_64161360
transcript_21611.known	chr11	+	2848	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	16	True	AATAAA	-20	NA	80319450	80364074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
transcript_21615.known	chr11	+	1626	13	FSM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	64.9491253897148	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	-44	True	NA	NA	NA	80319448	80362735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
transcript_21617.known	chr11	+	2342	13	FSM	ENSMUSG00000017428.17	ENSMUST00000147898.8	2342	13	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	68.9836433914269	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAACGGAAAGAAGTCC	NA	False	NA	NA	False	NA	NA	NA	80319469	80363132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80361245_80361451_80361504_80362277_80362421_80362535
transcript_21623.known	chr11	-	3106	21	FSM	ENSMUSG00000035441.15	ENSMUST00000070997.6	3106	21	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	3.19217793990247	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAGCCTAAATATTTTAT	NA	False	NA	NA	False	AGTAAA	-10	NA	80670851	80474652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_80474817_80477672_80477787_80483612_80483718_80484564_80484710_80492408_80492633_80528699_80528908_80531044_80531212_80548218_80548352_80553866_80553942_80557400_80557472_80561674_80561846_80565439_80565555_80565642_80565789_80566876_80567081_80567647_80567765_80570845_80570942_80573207_80573262_80575150_80575317_80576675_80576770_80583706_80583916_80670523
transcript_21624.nic	chr11	-	3064	19	ISM	ENSMUSG00000035441.15	ENSMUST00000070997.6	3106	21	-32	8756	-32	-8756	5prime_fragment	FALSE	canonical	1	2	junction_13	2.72448885227538	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTCATTTATGT	NA	False	NA	NA	False	AATAAA	-34	NA	80670883	80483408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_80483718_80484564_80484710_80492408_80492633_80528699_80528908_80531044_80531212_80548218_80548352_80553866_80553942_80557400_80557472_80561674_80561846_80565439_80565555_80565642_80565789_80566876_80567081_80567647_80567765_80570845_80570942_80573207_80573262_80575150_80575317_80576675_80576770_80583706_80583916_80670523
transcript_21625.known	chr11	-	5354	22	FSM	ENSMUSG00000035441.15	ENSMUST00000041065.14	5354	22	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.91683672973592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAAGGTGTTCTGTTTC	NA	False	NA	1	True	AATAAA	-14	NA	80670851	80372951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_80375209_80448259_80448415_80477672_80477787_80483612_80483718_80484564_80484710_80492408_80492633_80528699_80528908_80531044_80531212_80548218_80548352_80553866_80553942_80557400_80557472_80561674_80561846_80565439_80565555_80565642_80565789_80566876_80567081_80567647_80567765_80570845_80570942_80573207_80573262_80575150_80575317_80576675_80576770_80583706_80583916_80670523
transcript_21626.known	chr11	+	1633	7	FSM	ENSMUSG00000035413.9	ENSMUST00000040865.9	1633	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	3.67045259092421	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTAGTTACCGAGTCAA	NA	False	NA	5	True	AGTAAA	-23	NA	80701000	80712859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_80701286_80703331_80703516_80705044_80705177_80706491_80706526_80708328_80708445_80710755_80710816_80712037
transcript_21627.known	chr11	-	3436	10	FSM	ENSMUSG00000020704.14	ENSMUST00000021045.13	3436	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGCCTTTTCTCTGCGT	NA	False	NA	NA	False	ATTAAA	-28	NA	81044147	80770994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_80771985_80772438_80772508_80774247_80774328_80777421_80777514_80780558_80780713_80782569_80782627_80784799_80784951_80843305_80843434_80862289_80862441_81042583
transcript_21628.known	chr11	+	1591	1	FSM	ENSMUSG00000046010.8	ENSMUST00000056677.8	1591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGGGTATTCTTTTTT	NA	False	NA	NA	False	CATAAA	-21	NA	82655170	82656761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_82655200_82656800
transcript_21632.known	chr11	+	3056	20	FSM	ENSMUSG00000020697.17	ENSMUST00000080461.12	3056	20	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_19	43.9286124489467	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGTGTCTGTCTCTC	NA	False	NA	NA	False	ATTAAA	-34	NA	82672010	82691479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82691324
transcript_21633.known	chr11	+	3636	20	FSM	ENSMUSG00000020697.17	ENSMUST00000173727.8	3636	20	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	31.7035261983143	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTATGTGGCAAGACCTT	NA	False	NA	21	True	TTTAAA	-17	NA	82672018	82692852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678456_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
transcript_21640.known	chr11	-	3633	8	FSM	ENSMUSG00000020696.19	ENSMUST00000071152.14	3633	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	57.61306541161	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCCTGTCCCATCTGGT	2743	False	NA	NA	False	AATAAA	-11	NA	82762036	82694647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82736577_82736722_82761833
transcript_21645.known	chr11	-	3489	7	FSM	ENSMUSG00000020696.19	ENSMUST00000108173.10	3489	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_4	36.5942466637706	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCCTGTCCCATCTGGT	2743	False	NA	NA	False	AATAAA	-11	NA	82762036	82694647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82761833
transcript_21646.nic	chr11	-	3583	7	NIC	ENSMUSG00000020696.19	novel	3633	8	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_5	63.0204993104096	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCCTGTCCCATCTGGT	2709	False	NA	NA	False	AATAAA	-11	NA	82762070	82694647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_82697016_82699338_82699363_82700833_82701045_82703225_82703637_82709241_82709430_82736577_82736722_82761833
transcript_21654.nic	chr11	-	3439	6	NIC	ENSMUSG00000020696.19	novel	3489	7	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_3	39.9769933836951	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCCTGTCCCATCTGGT	2709	False	NA	NA	False	AATAAA	-11	NA	82762070	82694647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_82697016_82699338_82699363_82700833_82701045_82703225_82703637_82709241_82709430_82761833
transcript_21655.nic	chr11	-	1654	6	NIC	ENSMUSG00000020696.19	novel	1719	6	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_3	39.9769933836951	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGTGTTAATGTATC	2709	False	NA	-8	True	TTTAAA	-18	NA	82762070	82696432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_82697016_82699338_82699363_82700833_82701045_82703225_82703637_82709241_82709430_82761833
transcript_21662.known	chr11	+	5957	20	FSM	ENSMUSG00000020697.17	ENSMUST00000021039.12	5957	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	44.1937311456747	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTTTCCCCCCCAA	NA	False	NA	11	True	AATAAA	-16	NA	82671960	82695100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678453_82678659_82679581_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
transcript_21663.known	chr11	+	5797	20	FSM	ENSMUSG00000020697.17	ENSMUST00000173722.8	5797	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	44.7105805272123	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTCTACCTGAGATGTT	NA	False	NA	-65	True	AAAAAG	-44	NA	82672028	82695024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_82672099_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
transcript_21664.known	chr11	-	3426	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	0	0	0	0	multi-exon	TRUE	canonical	3	107	junction_4	12.9099444873581	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCTAGGGGTGCTAGGA	NA	False	NA	NA	False	NA	NA	NA	82781440	82767524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
transcript_21671.nnic	chr11	-	2317	10	NNC	ENSMUSG00000018841.18	novel	3426	10	NA	NA	-7	853	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	38.4739770959573	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGGCCATCCATCTGA	NA	False	NA	-10	True	AATAAA	-23	NA	82781447	82768709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780927_82781163
transcript_21675.known	chr11	-	1228	9	FSM	ENSMUSG00000018841.18	ENSMUST00000092844.13	1228	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	42.7280645477887	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGGTCTCAAGTTTTCT	NA	False	NA	-107	True	NA	NA	NA	82781415	82769562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774708_82774791_82780517_82780637_82780795_82780858_82781163
transcript_21676.known	chr11	-	1292	9	FSM	ENSMUSG00000018841.18	ENSMUST00000135963.8	1292	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	41.6186181293901	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGGTCTCAAGTTTTCT	NA	False	NA	-107	True	NA	NA	NA	82781415	82769562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_82769850_82770010_82770179_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
transcript_21687.known	chr11	-	1783	13	FSM	ENSMUSG00000020692.15	ENSMUST00000103213.10	1783	13	0	0	0	0	multi-exon	TRUE	canonical	3	193	junction_4	34.6180548590215	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	8303	False	NA	-6	True	AATAAA	-22	NA	82799237	82791593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_2169.known	chr1	+	1260	9	FSM	ENSMUSG00000025958.15	ENSMUST00000190348.2	1260	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	27.9773904251272	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATGCGCAAAACTGCCTG	NA	False	NA	NA	False	AGTAAA	-28	NA	64572052	64636636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64598885_64598928_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
transcript_21701.nic	chr11	-	1764	12	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	32	0	intron_retention	FALSE	canonical	3	35	junction_3	68.7710298414568	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8335	False	NA	-10	True	AATAAA	-18	NA	82799205	82791597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_82791877_82792382_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_21705.nic	chr11	-	2310	12	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-25	0	intron_retention	FALSE	canonical	3	193	junction_3	36.097892614939	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8278	False	NA	-10	True	AATAAA	-18	NA	82799262	82791597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_21711.nic	chr11	-	2273	11	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	29	0	intron_retention	FALSE	canonical	3	35	junction_2	72.0513705629532	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8332	False	NA	-10	True	AATAAA	-18	NA	82799208	82791597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_21712.nic	chr11	-	2391	11	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-25	0	intron_retention	FALSE	canonical	3	193	junction_2	37.0264770130781	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8278	False	NA	-10	True	AATAAA	-18	NA	82799262	82791597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_2172.known	chr1	+	5009	9	FSM	ENSMUSG00000025958.15	ENSMUST00000049932.12	5009	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	35.7786161694384	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTTTCAGAAGATTAC	NA	False	NA	NA	False	TTTAAA	-42	NA	64571967	64640416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_64572064_64590007_64590130_64597661_64597809_64598885_64598928_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
transcript_21728.known	chr11	-	2128	5	FSM	ENSMUSG00000069793.13	ENSMUST00000138797.2	2128	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	14.1133801762724	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATATCTGCCAGGCAG	8620	False	NA	NA	False	NA	NA	NA	82881963	82872809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_82872813_82872979_82873704_82875382_82875518_82878064_82879135_82881767
transcript_2173.known	chr1	+	8364	8	FSM	ENSMUSG00000025958.15	ENSMUST00000087366.11	8364	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	12.7375389286621	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTGTGTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	64571977	64643707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
transcript_21735.nic	chr11	-	890	2	ISM	ENSMUSG00000069793.13	ENSMUST00000138797.2	2128	5	-34	5665	-34	-5665	5prime_fragment	FALSE	canonical	3	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCCCAAAAATATATGAAAG	8586	False	NA	NA	False	TTTAAA	-18	NA	82881997	82878474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_82879135_82881767
transcript_21737.known	chr11	-	2128	5	FSM	ENSMUSG00000035208.17	ENSMUST00000130822.3	2128	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.75925291729789	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAATCTGCCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	82910934	82894712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_82894716_82894882_82895607_82904190_82904326_82907478_82908549_82910738
transcript_21738.nic	chr11	-	4118	4	NIC	ENSMUSG00000035208.17	novel	2128	5	NA	NA	-59	35	intron_retention	FALSE	canonical	1	1	junction_2	6.79869268479038	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGGGTAGGGGAGTGGG	NA	False	NA	NA	False	NA	NA	NA	82910993	82892948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_82895607_82904190_82904326_82907478_82908549_82910738
transcript_21740.known	chr11	-	498	1	FSM	ENSMUSG00000082419.4	ENSMUST00000119608.2	498	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAACAAGAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	82918823	82918325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_82918300_82918800
transcript_21744.known	chr11	+	356	3	FSM	ENSMUSG00000093483.2	ENSMUST00000176545.2	356	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	166	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATTTGTTTGGGTAAGA	5869	False	NA	10	True	ATTAAA	-19	NA	83182545	83185458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83182660_83182799_83182924_83185340
transcript_21745.known	chr11	+	471	2	FSM	ENSMUSG00000093483.2	ENSMUST00000176016.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTATTTGTTTGGGTAA	5892	False	NA	8	True	ATTAAA	-17	NA	83182568	83185456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83182924_83185340
transcript_21748.known	chr11	+	5625	22	FSM	ENSMUSG00000035152.15	ENSMUST00000018875.13	5625	22	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_14	47.3312733095844	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTTTGTGGTATGGACT	1959	False	NA	NA	False	AATAAA	-16	NA	83193308	83295861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83255620_83255663_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
transcript_21753.known	chr11	+	3269	21	FSM	ENSMUSG00000035152.15	ENSMUST00000065692.14	3269	21	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_14	24.9631728752577	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAACTGCACCTTAT	2250	False	NA	NA	False	ATTAAA	-20	NA	83193599	83293838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
transcript_21760.known	chr11	-	2389	4	FSM	ENSMUSG00000018733.11	ENSMUST00000108146.8	2389	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	16.4991582276861	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGACTTCTTGAAGTTT	2426	False	NA	-7	True	AATAAA	-16	NA	83189768	83185900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189537
transcript_21761.known	chr11	-	2729	4	FSM	ENSMUSG00000018733.11	ENSMUST00000018877.9	2729	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	22.7596133534821	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATACCATGGTTAATTAA	2391	False	NA	NA	False	AATAAA	-14	NA	83189803	83185467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189665
transcript_21766.known	chr11	-	2501	3	FSM	ENSMUSG00000018733.11	ENSMUST00000176518.2	2501	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	7.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTGACTTCTTGAAGTT	2471	False	NA	-8	True	AATAAA	-15	NA	83189723	83185901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_83187267_83188313_83188868_83189141
transcript_21767.known	chr11	+	3156	4	FSM	ENSMUSG00000020684.15	ENSMUST00000108140.10	3156	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	2.94392028877595	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGGTGTCAGCTCTGTTG	1436	False	NA	27	True	ATTAAA	-31	NA	83300513	83311865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83300708_83303303_83303661_83308677_83308803_83309385
transcript_2177.known	chr1	-	2030	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCAGTGTTGTCTTCTG	NA	False	NA	0	True	ATTAAA	-20	NA	64656401	64645631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
transcript_21770.known	chr11	+	2068	16	FSM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	25.2651714597168	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	8660	False	NA	41	True	AATAAA	-21	NA	83363917	83397569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
transcript_21773.known	chr11	+	881	7	FSM	ENSMUSG00000020680.16	ENSMUST00000134185.8	881	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	8.74960316560446	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATTGTAAAAAAAAAGGC	8654	False	NA	NA	False	CATAAA	-34	NA	83363911	83380039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750
transcript_21778.nnic	chr11	-	1087	4	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3706	658	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	12.9614813968157	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTCTGTCTGCCTCTTTT	NA	False	NA	-1	True	AATAAA	-18	NA	83473168	83465485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83473098
transcript_21782.known	chr11	+	5614	20	FSM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	6.60059596066985	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTTGGTTTCTGGGTCTCT	4017	False	NA	11	True	AATAAA	-20	NA	83644521	83674580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
transcript_21783.known	chr11	+	4067	20	FSM	ENSMUSG00000000976.14	ENSMUST00000125831.8	4067	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	14.4999761199536	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGAATTGTGTTTTCAAG	4035	False	NA	4	True	AATAAA	-23	NA	83644539	83672847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83644972_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
transcript_21793.nic	chr11	+	2586	15	ISM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	-10	7803	-10	-2966	5prime_fragment	TRUE	canonical	3	50	junction_5	7.08728381234551	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTTGTGGCGAGAACAG	4007	False	NA	NA	False	AATAAA	-15	NA	83644511	83666777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526
transcript_21801.nic	chr11	+	1164	7	ISM	ENSMUSG00000000976.14	ENSMUST00000125831.8	4067	20	-12	16998	6	-258	5prime_fragment	FALSE	canonical	2	8	junction_1	21.3124898175277	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTCTGTCCACTGAG	4023	False	NA	NA	False	NA	NA	NA	83644527	83655849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_83644972_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711
transcript_21807.known	chr11	+	3194	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTAATTGTTTTGTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	83832887	83853914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
transcript_2181.known	chr1	-	2666	3	FSM	ENSMUSG00000025956.11	ENSMUST00000053469.2	2666	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTACCTGTCAGTGTTG	NA	False	NA	-7	True	ATTAAA	-13	NA	64656327	64645638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_64647297_64654256_64654369_64655431
transcript_21810.nic	chr11	+	1828	14	ISM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	28	3554	28	-3554	5prime_fragment	FALSE	canonical	3	267	junction_7	31.1214456395943	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTACCTAGCTGGTAAGA	NA	False	NA	NA	False	NA	NA	NA	83832915	83850360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272
transcript_21813.nic	chr11	+	1740	13	ISM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	28	5551	28	5376	5prime_fragment	FALSE	canonical	3	267	junction_7	31.5527556465182	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCATCTAAACTTACTC	NA	False	NA	16	True	CATAAA	-22	NA	83832915	83848363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291
transcript_21819.nic	chr11	+	4118	22	NIC	ENSMUSG00000034940.16	novel	3990	23	NA	NA	-30	57	combination_of_known_junctions	FALSE	canonical	3	33	junction_7	16.6746919453981	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAAGCCCCCTGCCACTG	1402	False	NA	NA	False	AATAAA	-15	NA	83855223	83931837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_83855373_83862377_83862419_83867905_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83876074_83876378_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443_83900377_83910416_83910780_83914086_83914251_83915103_83915158_83915820_83915918_83917443_83917593_83930036_83930148_83931622
transcript_2182.known	chr1	+	2923	10	FSM	ENSMUSG00000070871.11	ENSMUST00000094898.5	2923	10	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	18.3632752128592	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGGCGAGTGTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	64730503	64764799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_64730560_64740127_64740203_64741504_64741540_64747536_64747638_64750576_64750613_64752269_64752322_64753727_64753848_64757289_64757457_64760785_64760949_64762681
transcript_21824.known	chr11	+	3651	21	FSM	ENSMUSG00000034940.16	ENSMUST00000183714.8	3651	21	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	19.49480700084	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGCTCAATGAAGCTG	1480	False	NA	NA	False	NA	NA	NA	83855301	83931754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_83855373_83862377_83862419_83867908_83868028_83869745_83869877_83872242_83872349_83873021_83873134_83877639_83877874_83878738_83878817_83880505_83880703_83881520_83881770_83885154_83885289_83892683_83892797_83892998_83893062_83899443_83900377_83910416_83910780_83914086_83914251_83915103_83915158_83915820_83915918_83917443_83917593_83930036_83930148_83931622
transcript_21829.known	chr11	-	1447	3	FSM	ENSMUSG00000018648.16	ENSMUST00000100705.11	1447	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	13.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	False	NA	-14	True	AATAAA	-15	NA	83959183	83938866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_83940137_83941657_83941747_83959095
transcript_21832.known	chr11	-	2151	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_10	48.5691259958423	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	-4	True	ATTAAA	-17	NA	84020426	83969745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
transcript_21844.nic	chr11	-	870	9	ISM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	-55	14664	-55	-8153	5prime_fragment	FALSE	canonical	3	409	junction_3	60.9045103009621	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGTGGGAAAGCCATC	NA	False	NA	15	True	AAGAAA	-4	NA	84020481	83984409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
transcript_21851.known	chr11	+	431	4	FSM	ENSMUSG00000020532.19	ENSMUST00000137500.9	431	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	9.80929264637478	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGACAGAAAGAAAATAGAC	NA	False	NA	NA	False	AGTAAA	-9	NA	84070656	84105021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_84070753_84083904_84083952_84086263_84086514_84104983
transcript_21854.nnic	chr11	-	1988	14	NNC	ENSMUSG00000018697.15	novel	1822	13	NA	NA	-11	-11	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_2	181.946510118712	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCTGTTGTCACTGTCT	NA	False	NA	-11	True	AATAAA	-33	NA	84404359	84313691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_84313846_84326559_84326726_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
transcript_21857.known	chr11	-	1822	13	FSM	ENSMUSG00000018697.15	ENSMUST00000018841.3	1822	13	0	0	0	0	multi-exon	TRUE	canonical	3	481	junction_8	26.3136793744665	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTCTTCACTGTGAGT	NA	False	NA	0	True	AATAAA	-44	NA	84404348	84313680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
transcript_2186.known	chr1	-	711	2	FSM	ENSMUSG00000087213.3	ENSMUST00000150749.2	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACAGTGCTACCTATGT	7927	False	NA	-16	True	AATAAA	-21	NA	64729818	64719029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_64719545_64729622
transcript_21869.known	chr11	-	1992	9	FSM	ENSMUSG00000018697.15	ENSMUST00000148434.2	1992	9	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_4	26.8348537353942	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84404348	84357730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
transcript_21873.known	chr11	-	2477	5	FSM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	44.51404272811	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTGGAGTTGATTTGT	NA	False	NA	-4	True	AATAAA	-23	NA	84710341	84703886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425_84709520_84709662
transcript_21875.nnic	chr11	-	2194	5	NNC	ENSMUSG00000018405.8	novel	2477	5	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	41.1035278291292	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTGGAGTTGATTTGT	NA	False	NA	-4	True	AATAAA	-23	NA	84710371	84703886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425_84709520_84709975
transcript_21878.known	chr11	-	1254	7	FSM	ENSMUSG00000034449.8	ENSMUST00000047560.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	7.19760762722973	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCCCCCCCAGCTCT	NA	False	NA	NA	False	NA	NA	NA	84719790	84711681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716404_84719576
transcript_2188.known	chr1	-	1505	1	FSM	ENSMUSG00000087213.3	ENSMUST00000186325.2	1505	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7958	False	NA	NA	False	NA	NA	NA	64729787	64728282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_64728300_64729800
transcript_21887.known	chr11	-	3056	14	FSM	ENSMUSG00000020530.15	ENSMUST00000168434.8	3056	14	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_13	138.817874810357	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761643	84723186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
transcript_2189.known	chr1	-	6915	2	FSM	ENSMUSG00000045005.10	ENSMUST00000063982.7	6915	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGCGTTGAGTCTTTCT	NA	False	NA	NA	False	ATTAAA	-22	NA	64776910	64769716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_64776013_64776291
transcript_21890.known	chr11	-	3034	14	FSM	ENSMUSG00000020530.15	ENSMUST00000108081.9	3034	14	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_13	134.623999724325	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761615	84723186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
transcript_21896.nic	chr11	-	2785	13	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	509	221	-27	-221	3prime_fragment	FALSE	canonical	3	268	junction_7	78.9034219790245	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAGAATGTGGTGTACAT	NA	False	NA	-6	True	AATAAA	-20	NA	84761055	84723407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
transcript_21897.known	chr11	-	2528	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCTGCCTATGATTTAAG	NA	False	NA	NA	False	NA	NA	NA	84761028	84723631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
transcript_21899.nic	chr11	-	2395	13	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	509	611	-27	0	3prime_fragment	FALSE	canonical	3	268	junction_7	78.9034219790245	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGACTACTGCGCCTTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	84761055	84723797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
transcript_2190.known	chr1	-	2895	2	FSM	ENSMUSG00000045005.10	ENSMUST00000116133.4	2895	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGTTTTTTTGGACTGTG	NA	False	NA	-60	True	GGGGCT	-43	NA	64776908	64773627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_64776013_64776398
transcript_21906.nic	chr11	-	1919	12	ISM	ENSMUSG00000020530.15	ENSMUST00000108081.9	3034	14	-13	4030	-13	30	5prime_fragment	FALSE	canonical	3	67	junction_11	145.975091274941	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGATGTTGAAATGCGAT	NA	False	NA	NA	False	NA	NA	NA	84761628	84727216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
transcript_2191.nic	chr1	-	3875	8	NIC	ENSMUSG00000051344.14	novel	8562	8	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_7	8.71311467541538	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACTATTAAGAAAATACCA	NA	False	NA	NA	False	ATTAAA	-38	NA	64995904	64832967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_64834374_64859094_64859253_64900345_64900410_64922287_64922482_64931910_64932057_64960708_64961642_64976855_64977699_64995773
transcript_21911.nic	chr11	-	2401	12	ISM	ENSMUSG00000020530.15	ENSMUST00000168434.8	3056	14	-473	4030	-473	30	5prime_fragment	FALSE	canonical	3	67	junction_11	150.464295207306	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGATGTTGAAATGCGAT	NA	False	NA	NA	False	NA	NA	NA	84762116	84727216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
transcript_21915.nic	chr11	-	1878	11	ISM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	509	4030	-27	30	internal_fragment	FALSE	canonical	3	268	junction_5	85.9532431034455	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGATGTTGAAATGCGAT	NA	False	NA	NA	False	NA	NA	NA	84761055	84727216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
transcript_21916.nic	chr11	-	1872	11	ISM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	-27	3585	-27	30	5prime_fragment	FALSE	canonical	3	231	junction_5	95.5680385903153	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGATGTTGAAATGCGAT	NA	False	NA	NA	False	NA	NA	NA	84761055	84727216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
transcript_2192.known	chr1	-	8562	8	FSM	ENSMUSG00000051344.14	ENSMUST00000097713.2	8562	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	6.03391773769796	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTCTCATATCAGCTTT	NA	False	NA	-5	True	AATAAA	-15	NA	64995983	64828279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_64834374_64859094_64859253_64900345_64900410_64922287_64922482_64931910_64932057_64960708_64961642_64976855_64977699_64995853
transcript_21923.nic	chr11	-	1379	8	ISM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	-27	7271	-27	-3656	5prime_fragment	FALSE	canonical	3	231	junction_2	113.169910185652	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGCCAAAAACGGAAGAACAG	NA	False	NA	NA	False	AAGAAA	-6	NA	84761055	84730902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
transcript_21956.nic	chr11	-	688	3	ISM	ENSMUSG00000020530.15	ENSMUST00000166425.2	386	4	262	-174	-27	174	3prime_fragment	FALSE	canonical	3	526	junction_1	21	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTATAGCTAATTAAGA	NA	False	NA	NA	False	AAAAAG	-27	NA	84761055	84751370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_84751625_84753063_84753145_84760702
transcript_21958.nnic	chr11	+	4008	27	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	39.4220262524157	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAACCTTTTGTTTTTG	NA	False	NA	16	True	AATAAA	-24	NA	84771134	84801948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_84771338_84771615_84771702_84771983_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
transcript_21966.nnic	chr11	+	4051	26	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_2	35.3332930817381	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAACCTTTTGTTTTTG	NA	False	NA	16	True	AATAAA	-24	NA	84770995	84801948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_84771338_84771615_84771702_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
transcript_21967.nnic	chr11	+	4708	26	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-257	0	at_least_one_novel_splicesite	TRUE	canonical	3	29	junction_2	32.2787856029312	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAACCTTTTGTTTTTG	NA	False	NA	16	True	AATAAA	-24	NA	84770716	84801948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_84771338_84771615_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
transcript_21977.known	chr11	+	4091	25	FSM	ENSMUSG00000020527.15	ENSMUST00000093969.11	4091	25	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_6	19.4264996561112	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTACAGTTGTAAGT	NA	False	NA	120	True	NA	NA	NA	84770973	84802052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
transcript_21991.nic	chr11	+	4176	24	NIC	ENSMUSG00000020527.15	novel	3651	24	NA	NA	-266	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_9	31.3266828534579	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAACCTTTTGTTTTTG	NA	False	NA	16	True	AATAAA	-24	NA	84770707	84801948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
transcript_21992.nic	chr11	+	3894	24	NIC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	29.4248586443195	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAACCTTTTGTTTTTG	NA	False	NA	16	True	AATAAA	-24	NA	84770996	84801948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
transcript_21998.nnic	chr11	+	4079	23	NIC	ENSMUSG00000020527.15	novel	3651	24	NA	NA	-266	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_8	34.3057472957617	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAACCTTTTGTTTTTG	NA	False	NA	16	True	AATAAA	-24	NA	84770707	84801948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
transcript_22.known	ERCC-00060	+	506	1	FSM	ERCC-00060A	DQ516763	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00060_+_0_500
transcript_22000.known	chr11	+	3644	23	FSM	ENSMUSG00000020527.15	ENSMUST00000124152.8	3644	23	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	38.7069942640691	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTTGTTTTAAGTA	NA	False	NA	25	True	AATAAA	-33	NA	84771178	84801957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
transcript_22004.known	chr11	+	1669	6	FSM	ENSMUSG00000020527.15	ENSMUST00000020837.7	1669	6	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	22.639787984873	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAGAAGAAAAAAAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	84771192	84783881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901
transcript_22005.known	chr11	-	998	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	False	NA	69	True	AATAAA	-16	NA	84807192	84801775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
transcript_22006.known	chr11	-	738	5	FSM	ENSMUSG00000020526.13	ENSMUST00000144552.8	738	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	166.285146660789	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCTTTTCCAGAGGACC	NA	False	NA	NA	False	NA	NA	NA	84807175	84802116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84802475_84804047_84804129_84805036_84805210_84806924_84806957_84807081
transcript_2201.known	chr1	-	654	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6025	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTCCAATAAACCTCAC	NA	False	NA	NA	False	NA	NA	NA	65033763	65033109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_65033100_65033800
transcript_22016.nic	chr11	+	2784	3	ISM	ENSMUSG00000020527.15	ENSMUST00000020837.7	1669	6	-74	5431	-17	4633	intron_retention	FALSE	canonical	3	104	junction_1	16.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTTCTGCTCTCCTGGA	NA	False	NA	NA	False	NA	NA	NA	84771118	84778450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_84771338_84773411_84773554_84776027
transcript_22018.known	chr11	-	7053	34	FSM	ENSMUSG00000000804.15	ENSMUST00000108075.9	7053	34	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_26	11.8228429036788	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTCTCTTTGTGATCCT	7485	False	NA	-14	True	AGTAAA	-22	NA	85030864	84875267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211_84885404_84896633_84896755_84897818_84897906_84900784_84900970_84908455_84908668_84910590_84910703_84912981_84913134_84913556_84913732_84916344_84916519_84917601_84917708_84917926_84918066_84919886_84919962_84921308_84921391_84922894_84923050_84927347_84927466_84930026_84930168_84930820_84930997_84933313_84933507_84935535_84935639_84941212_84941275_84942016_84942101_84944473_84944537_84944759_84944876_84946591_84946700_84949953_84950086_84968090_84968251_84971956_84972076_84974614_84974721_84994724_84994853_85030536
transcript_2202.known	chr1	-	631	3	FSM	ENSMUSG00000070870.7	ENSMUST00000087359.6	631	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTTCTCTGTTCCTTTC	NA	False	NA	NA	False	AATAAA	-28	NA	65090308	65087712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_65088056_65089928_65090172_65090263
transcript_22026.known	chr11	-	6463	13	FSM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	0	0	0	0	multi-exon	TRUE	canonical	3	360	junction_12	22.6180544894756	443	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCCGATTGAATTGTGA	NA	False	NA	0	True	AATAAA	-25	NA	85125956	85078087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241_85092348_85092428_85092497_85095059_85095150_85100765_85100935_85105061_85105186_85105935_85106088_85107261_85107351_85125497
transcript_2203.known	chr1	-	690	2	FSM	ENSMUSG00000070870.7	ENSMUST00000161960.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAGAGTTCTCTGTTCCT	NA	False	NA	NA	False	AATAAA	-25	NA	65090278	65087715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_65088056_65089928
transcript_22032.known	chr11	+	2899	6	FSM	ENSMUSG00000020525.18	ENSMUST00000020835.16	2899	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	8.90842298052804	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCTGGCGTTTTGTTGG	7706	False	NA	3	True	AATAAA	-13	NA	85202069	85237892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_85202750_85217689_85217919_85223076_85223202_85227890_85228082_85230379_85230623_85236461
transcript_22034.nic	chr11	+	1162	4	ISM	ENSMUSG00000020525.18	ENSMUST00000020835.16	2899	6	11	9863	11	0	5prime_fragment	FALSE	canonical	3	65	junction_1	11.4309521329882	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGATGCCATCTCCATGT	7717	False	NA	NA	False	NA	NA	NA	85202080	85228029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_85202750_85217689_85217919_85223076_85223202_85227890
transcript_2204.known	chr1	-	613	3	FSM	ENSMUSG00000067299.12	ENSMUST00000045028.15	613	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	4.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAATATTTTCTGTGT	7620	False	NA	-34	True	NA	NA	NA	65102611	65101030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_65101342_65102217_65102461_65102552
transcript_22041.known	chr11	+	2769	24	FSM	ENSMUSG00000059439.16	ENSMUST00000092821.10	2769	24	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_23	18.8377812860411	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCAGCCACCTGCTTCTG	3523	False	NA	NA	False	NA	NA	NA	85244037	85716176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722_85474821_85692610_85692779_85716027
transcript_22048.known	chr11	-	6931	20	FSM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	12.1006856333757	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAAGGTCCGATGACTT	NA	False	NA	NA	False	AATAAA	-14	NA	86092019	85948963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_85952872_85955603_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091934
transcript_2205.known	chr1	-	783	3	FSM	ENSMUSG00000025952.16	ENSMUST00000027089.15	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTTATTCTTTCATTG	688	False	NA	6	True	AATAAA	-32	NA	65112848	65110683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_65111031_65112320_65112564_65112655
transcript_22050.nic	chr11	-	3911	20	NIC	ENSMUSG00000034329.17	novel	6931	20	NA	NA	-9	-3064	combination_of_known_junctions	FALSE	canonical	3	7	junction_19	19.7350876413186	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATATTCTTCATTGGAAT	NA	False	NA	-24	True	GATAAA	-22	NA	86092028	85952027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_85952872_85955603_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091899
transcript_2206.known	chr1	-	612	3	FSM	ENSMUSG00000025952.16	ENSMUST00000114064.3	612	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGACTTCTGTTATTCTT	856	False	NA	0	True	AATAAA	-26	NA	65112680	65110689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_65111034_65112320_65112564_65112655
transcript_22060.nic	chr11	-	2855	19	ISM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	-40	6848	-40	-6848	5prime_fragment	FALSE	canonical	3	64	junction_7	11.8661516742184	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACGAAAAATGTACAAAAGA	NA	False	NA	NA	False	AATAGA	-10	NA	86092059	85955811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091934
transcript_2207.known	chr1	-	634	3	FSM	ENSMUSG00000073658.5	ENSMUST00000027090.9	634	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGCCTTTCTTTTAATC	1867	False	NA	NA	False	AATAAA	-32	NA	65121447	65119377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_65119727_65121073_65121317_65121405
transcript_22075.nic	chr11	-	4601	26	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	-1	0	intron_retention	FALSE	canonical	3	33	junction_24	49.1211726244397	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGTAAGGCAGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	86148402	86102913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147247_86147324_86148029
transcript_22081.nic	chr11	-	4062	26	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	-1	-539	intron_retention	FALSE	canonical	3	33	junction_24	49.1211726244397	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAAGTGCAGCCACTTG	NA	False	NA	NA	False	AATAAA	-28	NA	86148402	86103452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147247_86147324_86148029
transcript_22083.nic	chr11	-	3894	26	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	2	-539	combination_of_known_junctions	FALSE	canonical	3	50	junction_25	39.3049615188719	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAAGTGCAGCCACTTG	NA	False	NA	NA	False	AATAAA	-28	NA	86148399	86103452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148029_86148242_86148330
transcript_22084.known	chr11	-	5906	25	FSM	ENSMUSG00000018068.14	ENSMUST00000018212.13	5906	25	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_24	28.5226213829577	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGCTTTTATGTTTTAT	NA	False	NA	NA	False	TATAAA	-22	NA	86148376	86101506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148029
transcript_22099.known	chr11	-	3414	12	FSM	ENSMUSG00000018068.14	ENSMUST00000134883.2	3414	12	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_11	23.1509598537244	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGACTTCATATTTAGAT	NA	False	NA	NA	False	AATAAA	-2	NA	86148367	86125497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148029
transcript_2210.nnic	chr1	-	909	4	NNC	ENSMUSG00000044816.11	novel	1156	8	NA	NA	12813	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_3	4.02768199119819	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGGATGTCAGCTCTT	9932	False	NA	NA	False	AATAAA	-11	NA	65149460	65144443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_65144910_65148620_65148736_65149035_65149124_65149220
transcript_22117.nnic	chr11	-	3621	16	NIC	ENSMUSG00000020516.16	novel	5531	15	NA	NA	-6	1234	combination_of_known_splicesites	FALSE	canonical	3	28	junction_9	79.1358887540216	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGCCATGGCAGATGAC	NA	False	NA	NA	False	NA	NA	NA	86435606	86391624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408175_86408219_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
transcript_22121.nnic	chr11	-	1908	16	NIC	ENSMUSG00000020516.16	novel	5531	15	NA	NA	13	75	combination_of_known_splicesites	FALSE	canonical	3	28	junction_9	79.1358887540216	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCACAAAAAACTCAAGCAA	NA	False	NA	NA	False	AATAAA	-1	NA	86435618	86393349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408175_86408219_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
transcript_22128.nnic	chr11	-	2507	15	NNC	ENSMUSG00000020516.16	novel	5531	15	NA	NA	0	1234	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	64.7674017274941	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGCCATGGCAGATGAC	NA	False	NA	NA	False	NA	NA	NA	86435600	86391624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_86392724_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
transcript_22129.known	chr11	-	5531	15	FSM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_9	22.8179351227342	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAACAGTTATAAAACTTT	NA	False	NA	NA	False	AATAAA	-17	NA	86435631	86389696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
transcript_22152.known	chr11	+	4452	9	FSM	ENSMUSG00000020521.8	ENSMUST00000020827.7	4452	9	0	0	0	0	multi-exon	TRUE	canonical	3	265	junction_2	21.9146070008111	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCATTTAATTTCTATTT	NA	False	NA	NA	False	AATAAA	-30	NA	86375482	86389851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_86375626_86376886_86377332_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646
transcript_22158.known	chr11	+	1871	9	FSM	ENSMUSG00000020513.16	ENSMUST00000069503.13	1871	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.83087623059003	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCAGTCTGTTAAGTAAT	NA	False	NA	NA	False	AATAAA	-19	NA	86435816	86458186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
transcript_22159.known	chr11	+	1976	9	FSM	ENSMUSG00000020513.16	ENSMUST00000167178.9	1976	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	14.9702830634561	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCAGTCTGTTAAGTAA	NA	False	NA	NA	False	AATAAA	-18	NA	86435816	86458185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_86436163_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
transcript_22166.known	chr11	-	2787	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGCCTCATGGATTTTG	9872	False	NA	NA	False	AATAAA	-16	NA	86574662	86474690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
transcript_22173.nnic	chr11	-	1202	6	NNC	ENSMUSG00000018171.10	novel	2787	12	NA	NA	-19032	237	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_5	277.055517902098	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	NA	False	NA	0	True	TATAAA	-23	NA	86512153	86475518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86512073
transcript_22174.known	chr11	-	599	1	FSM	ENSMUSG00000083992.2	ENSMUST00000117851.2	599	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATAAAGACTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	86521852	86521253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86521300_86521900
transcript_22175.known	chr11	+	3038	2	FSM	ENSMUSG00000072582.10	ENSMUST00000108022.8	3038	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTGGTGTCTGATTCAT	NA	False	NA	NA	False	NA	NA	NA	86574810	86583283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_86574950_86580384
transcript_22179.known	chr11	-	6519	32	FSM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	0	0	0	0	multi-exon	TRUE	canonical	3	813	junction_25	122.673691341487	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGGTATTTCTTTTCAA	NA	False	NA	0	True	AATAAA	-18	NA	86648391	86585176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
transcript_22183.nic	chr11	-	3097	17	ISM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	-177	17142	-177	-10555	5prime_fragment	FALSE	canonical	3	813	junction_10	55.4356327193981	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACATTGACAGTAACAAC	NA	False	NA	NA	False	NA	NA	NA	86648568	86602318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
transcript_22190.known	chr11	-	6163	32	FSM	ENSMUSG00000047126.18	ENSMUST00000060766.16	6163	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_30	214.48063252277	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTAGAATTGCAGTTT	NA	False	NA	-7	True	AATAAA	-19	NA	86648327	86585480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627884_86628105_86648073
transcript_22192.known	chr11	-	3813	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACAGTATGTGGATTTTT	8527	False	NA	-8	True	ATTAAA	-7	NA	86698572	86659671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
transcript_22198.known	chr11	-	4847	5	FSM	ENSMUSG00000018427.9	ENSMUST00000018571.5	4847	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	6.94172168845741	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGGAGAATGTCTGTT	NA	False	NA	-8	True	AATAAA	-16	NA	86884533	86827250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86831515_86835398_86835508_86836758_86836803_86862634_86862949_86884417
transcript_22203.known	chr11	-	2336	10	FSM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.73053390247253	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTGATTCCAGTGTGT	NA	False	NA	-8	True	AATAAA	-39	NA	86964888	86924692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86926122_86926417_86926470_86928656_86928717_86932613_86932748_86935952_86936043_86936581_86936701_86947617_86947664_86950250_86950387_86954724_86954768_86964661
transcript_22204.known	chr11	-	3218	4	FSM	ENSMUSG00000020495.14	ENSMUST00000020801.14	3218	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	5.65685424949238	491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTATCTGTTTTGTC	NA	False	NA	1	True	AATAAA	-35	NA	86977600	86968557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86968977_86970991_86971865_86974425_86974572_86975820
transcript_22208.known	chr11	-	3824	10	FSM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	5.79484658240235	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCCAGAGTTCATGTTG	NA	False	NA	-13	True	ATTAAA	-16	NA	86999534	86979978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_86982692_86987788_86987886_86987960_86988021_86989488_86989605_86990200_86990300_86992207_86992472_86994012_86994136_86994365_86994517_86996834_86996968_86999466
transcript_22216.known	chr11	+	3037	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTCCATGTTATATT	NA	False	NA	13	True	AATAAA	-21	NA	87000059	87015461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
transcript_22227.nnic	chr11	+	3607	25	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	-47	30188	at_least_one_novel_splicesite	FALSE	canonical	3	225	junction_24	67.5794671109502	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTTTGTCATAATTTG	1869	False	NA	5	True	NA	NA	NA	87017855	87141697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077_87109157_87141416
transcript_22230.known	chr11	+	5632	24	FSM	ENSMUSG00000018548.16	ENSMUST00000041282.13	5632	24	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_12	47.8466359016781	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTTTGTTGTTTTATT	1916	False	NA	13	True	AATAAA	-15	NA	87017902	87111509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077
transcript_22250.nic	chr11	+	2914	21	ISM	ENSMUSG00000018548.16	ENSMUST00000041282.13	5632	24	-47	13833	-47	-1685	5prime_fragment	TRUE	canonical	3	377	junction_12	47.9967707247061	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAGACCGACAGTGCAAA	1869	False	NA	NA	False	NA	NA	NA	87017855	87097676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589
transcript_22256.nic	chr11	+	713	4	ISM	ENSMUSG00000018548.16	ENSMUST00000041282.13	5632	24	-47	80094	-47	-8728	5prime_fragment	FALSE	canonical	3	425	junction_2	42.4290257043716	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAAGACAAGTGCGTAG	1869	False	NA	NA	False	AAGAAA	-2	NA	87017855	87031415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310
transcript_22258.known	chr11	-	2061	10	FSM	ENSMUSG00000007646.14	ENSMUST00000153073.8	2061	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	58.9867112048589	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAATAGAAATAAAA	NA	False	NA	-38	True	NA	NA	NA	87295332	87269416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_87270314_87271657_87271719_87279073_87279154_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
transcript_22259.known	chr11	-	3944	9	FSM	ENSMUSG00000007646.14	ENSMUST00000067692.13	3944	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	12.5940213990607	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTTATGAACATTGGT	NA	False	NA	NA	False	AATAAA	-24	NA	87295349	87267470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
transcript_22261.known	chr11	+	4763	31	FSM	ENSMUSG00000010342.17	ENSMUST00000060835.12	4763	31	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_12	24.6584671056414	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGCCAGTTGTGATT	NA	False	NA	14	True	AATAAA	-20	NA	87295890	87446649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87433315_87433394_87434109_87434204_87440257_87440351_87442356_87442467_87445753_87445806_87446309
transcript_22265.nnic	chr11	+	4792	30	NIC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	-107	0	combination_of_known_splicesites	FALSE	canonical	1	11	junction_25	28.6387977613865	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGCCAGTTGTGATT	NA	False	NA	14	True	AATAAA	-20	NA	87295783	87446649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87434109_87434204_87440257_87440351_87442356_87442467_87445753_87445806_87446309
transcript_22281.nic	chr11	+	2763	15	ISM	ENSMUSG00000010342.17	ENSMUST00000060835.12	4763	31	9	39089	9	31968	5prime_fragment	FALSE	canonical	1	19	junction_12	15.5556932290636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAGAGTTTGGAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	87295899	87407560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493
transcript_22282.nic	chr11	+	3424	15	ISM	ENSMUSG00000010342.17	ENSMUST00000060835.12	4763	31	-107	38544	-107	32513	5prime_fragment	FALSE	canonical	1	19	junction_12	15.5556932290636	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CACCAAAAAACAGAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	87295783	87408105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493
transcript_22295.known	chr11	+	5753	19	FSM	ENSMUSG00000018401.18	ENSMUST00000103179.10	5753	19	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	26.7350973833791	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGGTCTTTTTATTT	NA	False	NA	20	True	AATAAA	-20	NA	87482987	87507128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87483077_87484214_87484260_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
transcript_22298.nic	chr11	+	4728	18	NIC	ENSMUSG00000018401.18	novel	792	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	23.4398294690113	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCACTTCCCCCATGT	NA	False	NA	3	True	AATAAA	-16	NA	87486463	87505998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_87486703_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
transcript_22299.nic	chr11	+	5917	18	NIC	ENSMUSG00000018401.18	novel	792	7	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	23.4398294690113	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGGTCTTTTTATTT	NA	False	NA	20	True	AATAAA	-20	NA	87486404	87507128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_87486703_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
transcript_223.nic	SIRV7	-	922	5	NIC	SIRV7A	novel	949	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	2098	junction_4	2004.60063042492	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147958	56031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_SIRV7_-_56098_70883_70988_78841_78964_114680_114961_147608
transcript_2230.known	chr1	-	2283	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTATTATGTGTTTT	NA	False	NA	-8	True	ATTAAA	-26	NA	65225638	65197776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
transcript_22305.known	chr11	+	854	6	FSM	ENSMUSG00000020485.15	ENSMUST00000152700.8	854	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	256.77351888386	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTACTGAGGCCTGTGCCT	NA	False	NA	8	True	AATAAA	-25	NA	87628377	87634449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87628495_87628992_87629100_87631330_87631473_87633621_87633678_87633883_87633938_87634071
transcript_22307.known	chr11	+	706	5	FSM	ENSMUSG00000020485.15	ENSMUST00000093955.12	706	5	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_3	25.7972866790289	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87628495_87628992_87629100_87633621_87633678_87633883_87633938_87634071
transcript_22316.nnic	chr11	+	2644	18	NNC	ENSMUSG00000034121.13	novel	2194	7	NA	NA	-5246	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	31.5170080957562	189	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1210	False	NA	18	True	TATAAA	-20	NA	87738794	87754629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_87739055_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_22319.nnic	chr11	+	2542	18	NNC	ENSMUSG00000034121.13	novel	2194	7	NA	NA	-5046	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	43.1100627307653	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1410	False	NA	18	True	TATAAA	-20	NA	87738994	87754629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_87739153_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_2232.known	chr1	-	2302	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	1030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATTATGTGTTTTTA	NA	False	NA	-6	True	ATTAAA	-28	NA	65218340	65197774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
transcript_22328.nnic	chr11	+	2513	17	NNC	ENSMUSG00000034121.13	novel	688	4	NA	NA	-5225	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	42.5595171495166	79	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1231	False	NA	18	True	TATAAA	-20	NA	87738815	87754629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_87739055_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_22342.known	chr11	+	2499	18	FSM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	22.9555008070187	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	6456	False	NA	18	True	TATAAA	-20	NA	87744040	87754629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_22343.known	chr11	+	1601	9	FSM	ENSMUSG00000034121.13	ENSMUST00000130135.8	1601	9	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	26.4430401996442	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAGAAAAAAAAAGCGC	6468	False	NA	NA	False	NA	NA	NA	87744052	87750139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428
transcript_22344.nic	chr11	-	1794	6	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	5205	0	1437	0	3prime_fragment	FALSE	canonical	2	6	junction_4	6.99714227381436	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCGCTGTCTCTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	87761157	87754825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376_87759548_87760072_87760329_87760646
transcript_22345.nic	chr11	-	1108	4	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	6734	0	2966	0	3prime_fragment	FALSE	canonical	3	12	junction_2	4.89897948556636	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCGCTGTCTCTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	87759628	87754825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376
transcript_22349.nnic	chr11	-	2639	4	NNC	ENSMUSG00000020483.15	novel	2443	3	NA	NA	-44314	0	intron_retention	FALSE	canonical	3	7	junction_2	286.479008344804	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGGGGTTTCTTTGGG	NA	False	NA	0	True	ATTAAA	-22	NA	87922673	87870350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_87872397_87874697_87874837_87892657_87892839_87922400
transcript_22354.known	chr11	-	2476	3	FSM	ENSMUSG00000020483.15	ENSMUST00000020775.9	2476	3	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_2	8	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGGGGTTTCTTTGGG	NA	False	NA	0	True	ATTAAA	-22	NA	87878359	87870350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_87872397_87874697_87874837_87878068
transcript_22355.nnic	chr11	-	2453	3	NNC	ENSMUSG00000020483.15	novel	2443	3	NA	NA	-44309	0	intron_retention	FALSE	canonical	3	52	junction_2	289.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGGGGTTTCTTTGGG	NA	False	NA	0	True	ATTAAA	-22	NA	87922668	87870350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_87872397_87874697_87874837_87922400
transcript_22357.nnic	chr11	-	715	3	NNC	ENSMUSG00000020483.15	novel	2443	3	NA	NA	-44309	-1108	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_2	289.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87922668	87872088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_87872397_87874697_87874837_87922400
transcript_22362.nnic	chr11	+	2792	5	NNC	ENSMUSG00000018379.18	novel	1209	5	NA	NA	-117	0	intron_retention	FALSE	non_canonical	0	0	junction_4	601.003483766941	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGCATGGTTGTCCTTTT	6478	False	NA	21	True	AATAAA	-15	NA	87938426	87942316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237_87941661_87941737
transcript_22367.known	chr11	+	5362	4	FSM	ENSMUSG00000018379.18	ENSMUST00000139129.9	5362	4	0	0	0	0	multi-exon	FALSE	canonical	3	1111	junction_3	192.19839287107	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAGATTTAAGTTCTCC	6250	False	NA	20	True	AATAAA	-22	NA	87938198	87944581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237
transcript_22368.nic	chr11	+	2464	4	NIC	ENSMUSG00000018379.18	novel	896	4	NA	NA	-70	0	intron_retention	FALSE	canonical	3	275	junction_3	562.44999777758	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACATTTTTTAAAAAACG	6180	False	NA	3	True	NA	NA	NA	87938128	87942298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_87938859_87939315_87939501_87939868_87940922_87941802
transcript_22371.known	chr11	+	2948	3	FSM	ENSMUSG00000018379.18	ENSMUST00000079866.11	2948	3	0	0	0	0	multi-exon	FALSE	canonical	3	1310	junction_1	135	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGCATGGTTGTCCTTTT	6595	False	NA	21	True	AATAAA	-15	NA	87938543	87942316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87938859_87939315_87939501_87939868
transcript_22374.known	chr11	+	645	2	FSM	ENSMUSG00000018379.18	ENSMUST00000171976.2	645	2	0	0	0	0	multi-exon	FALSE	canonical	3	1310	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGGTGATTTACCCAAAT	6602	False	NA	NA	False	AATAAA	-9	NA	87938550	87939652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87938859_87939315
transcript_22378.known	chr11	+	4583	6	FSM	ENSMUSG00000018377.11	ENSMUST00000018521.11	4583	6	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	9.15641851380768	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGACTGTTAATGCCGC	NA	False	NA	17	True	ATTAAA	-22	NA	87959104	87975555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87959260_87963882_87964578_87965487_87965552_87967016_87967201_87969228_87969382_87972223
transcript_22383.known	chr11	+	3180	11	FSM	ENSMUSG00000018378.14	ENSMUST00000018522.13	3180	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	5.85234995535981	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCCAGCGGCGTGGGCT	3335	False	NA	23	True	AATAAA	-27	NA	87989971	88084966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87990170_88060390_88061001_88068095_88068224_88073306_88073434_88074064_88074258_88075459_88075544_88077886_88077959_88078819_88078914_88079608_88079668_88080880_88080952_88083422
transcript_22387.known	chr11	+	1844	6	FSM	ENSMUSG00000018378.14	ENSMUST00000133149.2	1844	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	7.56306816047562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAGAAAAAGAAAAGAAAA	3479	False	NA	NA	False	NA	NA	NA	87990115	88076191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_87990170_88060390_88061001_88068095_88068224_88073306_88073434_88074064_88074258_88075459
transcript_22392.known	chr11	+	1332	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095213	88102333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
transcript_22394.known	chr11	+	1404	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	110.143939915004	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095236	88102333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
transcript_22398.known	chr11	-	6436	14	FSM	ENSMUSG00000069769.14	ENSMUST00000107909.8	6436	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.72650848321069	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTAGTGTTCTTGTGT	1982	False	NA	-1	True	AATAAA	-20	NA	88609055	88230207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_88235487_88237878_88237952_88239609_88239765_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88603263_88603306_88607335_88607421_88608115_88608198_88608530_88608572_88608854
transcript_224.known	SIRV7	-	949	5	FSM	SIRV7A	SIRV706	949	5	0	0	0	0	multi-exon	FALSE	canonical	3	3147	junction_1	1522.61994601411	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147957	56031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV7_-_56098_70883_70988_78841_78964_114680_114989_147608
transcript_22400.known	chr11	-	1855	14	FSM	ENSMUSG00000069769.14	ENSMUST00000092794.12	1855	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.8895153054003	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTACAAGGTTTTTTGAA	2110	False	NA	NA	False	NA	NA	NA	88608927	88234714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_88235487_88237878_88237952_88239609_88239819_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88603263_88603306_88607335_88607421_88608115_88608198_88608530_88608572_88608854
transcript_22402.nic	chr11	-	2282	11	ISM	ENSMUSG00000069769.14	ENSMUST00000092794.12	1855	14	-211	21626	-83	0	5prime_fragment	FALSE	canonical	0	0	junction_6	5.48543526076099	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAGCAAA	1899	False	NA	NA	False	AATGAA	-2	NA	88609138	88256340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88603263_88603306_88607335_88607421_88608115_88608198_88608530_88608572_88608854
transcript_2241.known	chr1	+	4266	13	FSM	ENSMUSG00000025949.17	ENSMUST00000186404.7	4266	13	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_11	21.5554839632259	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	65225862	65272443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663_65262812_65263320_65263489_65269952
transcript_2242.known	chr1	+	1303	8	FSM	ENSMUSG00000025949.17	ENSMUST00000189925.7	1303	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	38.9814189121967	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAAAATCCTTCAA	NA	False	NA	NA	False	NA	NA	NA	65225854	65245333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65245033
transcript_22432.known	chr11	-	3758	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	92	True	TATAAA	-7	NA	88755412	88721617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
transcript_2245.known	chr1	+	1044	7	FSM	ENSMUSG00000025949.17	ENSMUST00000185317.7	1044	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	20.9257948209593	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATTTTTTATTTATGTC	NA	False	NA	NA	False	AATAAA	-13	NA	65225841	65244865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747
transcript_22457.nic	chr11	-	3053	2	ISM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	-41	12252	-41	-4072	5prime_fragment	FALSE	canonical	3	913	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGATCTGCATCTTAAAA	NA	False	NA	NA	False	AATAAA	-41	NA	88755453	88733869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_88736692_88755222
transcript_22463.known	chr11	-	2097	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	0	0	0	0	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	2256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5201	False	NA	-9	True	AATAAA	-20	NA	88846291	88814845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
transcript_22476.known	chr11	-	704	3	FSM	ENSMUSG00000057534.14	ENSMUST00000121228.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	27	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6805	False	NA	0	True	AATAAA	-26	NA	88857757	88855483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_88856100_88857540_88857603_88857731
transcript_22477.known	chr11	-	819	2	FSM	ENSMUSG00000057534.14	ENSMUST00000061938.14	819	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6819	False	NA	0	True	AATAAA	-26	NA	88857743	88855483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_88856100_88857540
transcript_22483.known	chr11	+	3120	11	FSM	ENSMUSG00000033983.15	ENSMUST00000107898.8	3120	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	472.900412349154	719	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	9431	False	NA	15	True	AATAAA	-17	NA	88861077	88882439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_88861099_88861243_88861306_88863446_88863680_88864257_88864384_88864689_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
transcript_2249.known	chr1	+	4981	15	FSM	ENSMUSG00000015222.19	ENSMUST00000114017.8	4981	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	6.25846365707581	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATGATATAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	66214471	66481187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_66214655_66232277_66232341_66290820_66290872_66361562_66361628_66401361_66401440_66419647_66419933_66438547_66438662_66440602_66440681_66459293_66459356_66460804_66460950_66464355_66464688_66470685_66470779_66472672_66472755_66477412_66477526_66477950
transcript_22509.known	chr11	-	581	2	FSM	ENSMUSG00000085152.2	ENSMUST00000128078.2	581	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCCAGAGTTCAAATCCC	9039	False	NA	NA	False	NA	NA	NA	88887370	88883865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_88884304_88887227
transcript_22511.nnic	chr11	+	5680	10	NNC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	-138	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	180.202012841419	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGACATTGTCCTGCCTTT	NA	False	NA	22	True	NA	NA	NA	88890063	88911117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020_88910662_88910707
transcript_22512.nnic	chr11	+	5373	10	NNC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	32	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	201.338545431676	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGACATTGTCCTGCCTTT	NA	False	NA	22	True	NA	NA	NA	88890233	88911117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907157_88910662_88910707
transcript_22514.known	chr11	+	5590	9	FSM	ENSMUSG00000000275.17	ENSMUST00000107896.10	5590	9	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_5	154.213123630902	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	NA	False	NA	24	True	NA	NA	NA	88890201	88911119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020
transcript_22516.known	chr11	+	1433	5	FSM	ENSMUSG00000000275.17	ENSMUST00000100627.9	1433	5	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_3	39.7680776502963	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCACTGTGATACACATG	NA	False	NA	NA	False	NA	NA	NA	88890201	88904528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301
transcript_22519.known	chr11	-	5208	11	FSM	ENSMUSG00000000276.12	ENSMUST00000000285.9	5208	11	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_8	10.9859000541603	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCTTTTTTTTTTTT	3832	False	NA	NA	False	NA	NA	NA	88951574	88928407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_88931738_88932273_88932386_88932987_88933116_88935065_88935138_88939714_88939829_88940674_88940727_88941144_88941303_88941494_88941639_88943252_88943373_88946183_88946344_88950756
transcript_2253.known	chr1	-	4459	14	FSM	ENSMUSG00000026004.16	ENSMUST00000068168.10	4459	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	4.9278822701683	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTGTATTGTGTGATT	6640	False	NA	NA	False	ATTAAA	-12	NA	66856705	66758521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_66760166_66760963_66761133_66762421_66762535_66763716_66763772_66765032_66765158_66765845_66765968_66774795_66774904_66777209_66777373_66801206_66801412_66812064_66812187_66812580_66812779_66817125_66817268_66840207_66841328_66856532
transcript_22530.known	chr11	-	8347	12	FSM	ENSMUSG00000000276.12	ENSMUST00000107894.8	8347	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	22.9163047805136	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTATGGTTGTTTGAC	9307	False	NA	-7	True	AATAAA	-19	NA	88957676	88926004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_88931738_88932273_88932386_88932987_88933116_88935065_88935138_88939714_88939829_88940674_88940727_88941144_88941303_88941494_88941639_88943252_88943373_88946183_88946344_88950756_88951858_88957223
transcript_22531.known	chr11	-	1695	1	FSM	ENSMUSG00000048616.5	ENSMUST00000061728.5	1695	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCTCTACACTGTGATT	NA	False	NA	NA	False	ATTAAA	-19	NA	89193158	89191463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_89191500_89193200
transcript_22532.known	chr11	-	2723	6	FSM	ENSMUSG00000020553.9	ENSMUST00000020864.9	2723	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	5.78273291792038	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTGGTATTTGATTTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	89893720	89873490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_89875583_89876918_89876987_89878021_89878194_89879520_89879601_89881896_89882015_89893527
transcript_22534.known	chr11	+	2677	7	FSM	ENSMUSG00000003948.18	ENSMUST00000004050.7	2677	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_6	11.2249721603218	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGGCTGAGAGTAATGCT	NA	False	NA	29	True	AATAAA	-34	NA	90140301	90169415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_90140562_90148345_90148428_90150652_90150814_90155328_90155404_90156870_90156973_90158337_90158408_90167488
transcript_22537.known	chr11	+	2031	4	FSM	ENSMUSG00000110344.2	ENSMUST00000134929.8	2031	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.7851130197758	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGCAATCTTTTTTAATG	6347	False	NA	NA	False	AATAAA	-16	NA	90078509	90142081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_90079062_90099809_90099873_90139630_90140562_90141596
transcript_22538.known	chr11	+	1654	6	FSM	ENSMUSG00000003948.18	ENSMUST00000107887.8	1654	6	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	10.2058806577385	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTTTTAACTCATTTC	NA	False	NA	NA	False	ATTAAA	-13	NA	90140281	90159291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_90140562_90148345_90148428_90150652_90150814_90155328_90155404_90156870_90156973_90158337
transcript_22539.known	chr11	-	5642	4	FSM	ENSMUSG00000003949.17	ENSMUST00000004051.8	5642	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTATTTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-17	NA	90281721	90227361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_90231801_90236583_90236805_90278611_90278948_90281075
transcript_22541.known	chr11	-	5985	18	FSM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_15	2.25532817796245	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTAGATTTTCTTT	NA	False	NA	NA	False	AGTAAA	-32	NA	90528910	90367317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_90371541_90385427_90385486_90426305_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
transcript_22547.known	chr11	-	1782	16	FSM	ENSMUSG00000020546.15	ENSMUST00000020858.14	1782	16	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_13	1.92527054375915	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGTAGTTCAATTGCA	NA	False	NA	NA	False	ATTAAA	-22	NA	90528888	90426205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
transcript_2255.known	chr1	-	2342	8	FSM	ENSMUSG00000026004.16	ENSMUST00000113987.2	2342	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	4.70345075232981	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATGCAAATCCTTAAT	6624	False	NA	NA	False	AATAAA	-13	NA	66856721	66774700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_66774904_66777209_66777373_66801206_66801412_66812064_66812187_66812580_66812779_66817125_66817268_66840207_66841328_66856532
transcript_22552.known	chr11	-	2093	16	FSM	ENSMUSG00000020541.13	ENSMUST00000107868.8	2093	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_14	62.6969430408426	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTGTTGTTGTTTTGTC	NA	False	NA	-2	True	ATTAAA	-17	NA	90578427	90536516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574157_90575887_90575973_90578338
transcript_22555.known	chr11	+	1224	4	FSM	ENSMUSG00000020544.15	ENSMUST00000020851.15	1224	4	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	41.2876091178294	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGGCCTGACAACTTGA	NA	False	NA	10	True	NA	NA	NA	90528998	90535757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_90529379_90531202_90531359_90534478_90534605_90535195
transcript_22560.known	chr11	-	2613	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	0	0	0	0	multi-exon	TRUE	canonical	3	770	junction_1	49.2161035848126	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACATGCTTTGATCAAACT	NA	False	NA	NA	False	AAGAAA	-4	NA	93776592	93750068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
transcript_22566.known	chr11	+	3785	18	FSM	ENSMUSG00000059474.14	ENSMUST00000063718.11	3785	18	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_17	47.4662509863478	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGTAAAAAGAATGCTAA	NA	False	NA	NA	False	NA	NA	NA	93777042	93836147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_93777243_93777847_93777900_93782164_93782215_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834487
transcript_22568.nic	chr11	+	3792	18	NIC	ENSMUSG00000059474.14	novel	3785	18	NA	NA	2	11	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	41.2407061984984	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCTAATGGAAAACCCC	NA	False	NA	NA	False	NA	NA	NA	93776933	93836158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_93777243_93777847_93777900_93782164_93782215_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
transcript_22579.nic	chr11	+	3792	17	NIC	ENSMUSG00000059474.14	novel	3785	18	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_16	40.9622062851844	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGTAAAAAGAATGCTAA	NA	False	NA	NA	False	NA	NA	NA	93776985	93836147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_93777243_93777847_93777900_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834487
transcript_22581.nic	chr11	+	3742	17	NIC	ENSMUSG00000059474.14	novel	3785	18	NA	NA	2	11	combination_of_known_junctions	FALSE	canonical	3	43	junction_2	31.7736132663567	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCTAATGGAAAACCCC	NA	False	NA	NA	False	NA	NA	NA	93776933	93836158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_93777243_93777847_93777900_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
transcript_22582.nic	chr11	+	3786	17	NIC	ENSMUSG00000059474.14	novel	5232	16	NA	NA	23	11	combination_of_known_junctions	FALSE	canonical	3	5	junction_6	51.677938958515	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCTAATGGAAAACCCC	NA	False	NA	NA	False	NA	NA	NA	93776954	93836158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_93777243_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93809656_93809774_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
transcript_22585.nic	chr11	+	4262	16	NIC	ENSMUSG00000059474.14	novel	5245	16	NA	NA	-611	11	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	37.4358117315492	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCTAATGGAAAACCCC	NA	False	NA	NA	False	NA	NA	NA	93776066	93836158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_93776948_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
transcript_22586.known	chr11	+	5245	16	FSM	ENSMUSG00000059474.14	ENSMUST00000107853.8	5245	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	36.201657420621	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93776677	93837811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_93776889_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
transcript_22591.known	chr11	+	5232	16	FSM	ENSMUSG00000059474.14	ENSMUST00000107854.9	5232	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	35.1887608319601	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAATTTTTCAACAT	NA	False	NA	19	True	AATAAA	-20	NA	93777044	93837811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_93777243_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
transcript_2260.known	chr1	+	2692	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTTGAATTCTTGAT	NA	False	NA	5	True	ATTAAA	-12	NA	66739989	66758964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
transcript_22603.known	chr11	-	991	8	FSM	ENSMUSG00000091228.2	ENSMUST00000170303.2	991	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	2495.73089372183	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTGCAGTGTTCAGT	613	False	NA	-33	True	NA	NA	NA	93859119	93840644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93851493_93851607_93854052_93854155_93856633_93856764_93859046
transcript_22604.known	chr11	-	3181	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	0	0	0	0	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATATTATGTGTAGGTGTG	385	False	NA	NA	False	NA	NA	NA	93859347	93847804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
transcript_22614.known	chr11	-	734	4	FSM	ENSMUSG00000020857.12	ENSMUST00000072566.5	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	6715	junction_3	620.302256072706	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGTGTTCAGTAC	NA	False	NA	-31	True	NA	NA	NA	93846609	93840642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320
transcript_22615.known	chr11	+	7340	29	FSM	ENSMUSG00000020859.17	ENSMUST00000041956.14	7340	29	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	9.62220009633335	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGAAGTCTAGTGTGGT	676	False	NA	9	True	TATAAA	-16	NA	93886928	94016911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_93887400_93904448_93904570_93927425_93927497_93934397_93934493_93939233_93939385_93958718_93958927_93959761_93959862_93962390_93962513_93972165_93972224_93973585_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589_93982720_93983163_93983254_93983640_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004998_94005176_94007555_94007706_94013547
transcript_22616.known	chr11	+	6910	27	FSM	ENSMUSG00000020859.17	ENSMUST00000075695.13	6910	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	23.5125548736498	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGTGTGAAGTCTAGT	NA	False	NA	4	True	TATAAA	-11	NA	93935030	94016906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_93935352_93939233_93939385_93958718_93958927_93959761_93959862_93962390_93962513_93970024_93970037_93972165_93972224_93973585_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589_93982720_93983163_93983254_93983640_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004998_94005176_94007555_94007706_94013547
transcript_22625.nic	chr11	+	2456	17	ISM	ENSMUSG00000020859.17	ENSMUST00000041956.14	7340	29	-103	33102	-91	-1246	5prime_fragment	FALSE	canonical	3	49	junction_7	9.91822029146359	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGGGGTGGGTGGGTATG	573	False	NA	NA	False	NA	NA	NA	93886825	93983809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_93887400_93904448_93904570_93927425_93927497_93934397_93934493_93939233_93939385_93958718_93958927_93959761_93959862_93962390_93962513_93972165_93972224_93973585_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589_93982720_93983163_93983254_93983640
transcript_22629.nic	chr11	+	615	2	ISM	ENSMUSG00000020859.17	ENSMUST00000132605.2	3000	5	-103	36986	-91	-29965	5prime_fragment	FALSE	canonical	3	50	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTACAGACGCGAGTGG	573	False	NA	NA	False	NA	NA	NA	93886825	93904489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_93887400_93904448
transcript_22630.known	chr11	-	411	1	FSM	ENSMUSG00000081604.6	ENSMUST00000118048.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4851	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	93928454	93928043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_93928000_93928500
transcript_22631.known	chr11	+	695	6	FSM	ENSMUSG00000086003.8	ENSMUST00000132584.8	695	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	57.6520598070876	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024310	94046602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94024382_94029312_94029490_94040661_94040792_94042163_94042239_94046281_94046324_94046402
transcript_22632.known	chr11	+	473	4	FSM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	38.4967531098403	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024327	94046602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94024382_94029312_94029490_94046281_94046324_94046402
transcript_22633.known	chr11	+	2288	2	FSM	ENSMUSG00000037573.6	ENSMUST00000041589.6	2288	2	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	0	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTATCCTGTGGTCTTTG	NA	False	NA	NA	False	ATTAAA	-19	NA	94102279	94106321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94102558_94104311
transcript_22634.known	chr11	-	3373	11	FSM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	62.20843994186	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212814	94181964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_22636.known	chr11	-	2050	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	26.33172990899	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	False	NA	73	True	AATAAA	-27	NA	94212814	94181886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_22637.known	chr11	-	3478	10	FSM	ENSMUSG00000020863.16	ENSMUST00000107820.2	3478	10	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_9	26.1850018328748	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212814	94181964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_22641.nic	chr11	-	1078	8	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	-73	5917	-73	0	5prime_fragment	FALSE	canonical	3	230	junction_7	21.9981446341945	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAGACGAAGAGAA	NA	False	NA	6	True	NA	NA	NA	94212887	94187881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_22642.nic	chr11	-	922	8	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	25	5975	-5	-58	5prime_fragment	FALSE	canonical	3	230	junction_7	21.9981446341945	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAGCAAGAAAGAGAGGA	NA	False	NA	-52	True	AAAAAG	-38	NA	94212789	94187939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_22645.nic	chr11	-	966	7	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	-73	6620	-73	-703	5prime_fragment	FALSE	canonical	3	230	junction_6	23.7164968370588	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTTCGTAAGCATG	NA	False	NA	NA	False	ATTAAA	-22	NA	94212887	94188584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_22648.nic	chr11	-	560	5	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	25	10407	-5	-4490	5prime_fragment	FALSE	canonical	3	230	junction_4	26.7429897356298	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGTTCTGACAGACAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	94212789	94192371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_22649.nic	chr11	-	558	4	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	-6	12702	-6	-6785	5prime_fragment	FALSE	canonical	3	230	junction_3	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTATGAAATGGACTTAG	NA	False	NA	NA	False	NA	NA	NA	94212820	94194666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_94194813_94197011_94197052_94200450_94200518_94212515
transcript_22650.known	chr11	+	3487	5	FSM	ENSMUSG00000020864.14	ENSMUST00000107818.9	3487	5	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_3	18.6061145863396	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCCATTCTCTCTCGTT	3994	False	NA	17	True	ATTAAA	-18	NA	94218826	94232667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94219214_94224726_94224876_94225253_94225734_94229165_94229348_94230378
transcript_22655.known	chr11	-	4999	31	FSM	ENSMUSG00000020865.17	ENSMUST00000021231.8	4999	31	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_29	23.6867520403753	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGGGTCACATGTTAC	NA	False	NA	-7	True	AATAAA	-14	NA	94283802	94234123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624_94242784_94242905_94243053_94245838_94245941_94247798_94247926_94248032_94248233_94249577_94249889_94250066_94250275_94250352_94250501_94250654_94250767_94251997_94252176_94252475_94252644_94254258_94254436_94254522_94254650_94254867_94254935_94255177_94255266_94255598_94255746_94255851_94256056_94258415_94258509_94259006_94259169_94259266_94259445_94262444_94262634_94263698_94263831_94264452_94264515_94264734_94264861_94265547_94265686_94265892_94266019_94266366_94266544_94283696
transcript_22656.known	chr11	-	5005	31	FSM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_29	23.7014064280301	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	NA	False	NA	-4	True	AATAAA	-17	NA	94283802	94234120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624_94242784_94242905_94243053_94245838_94245941_94247798_94247926_94248032_94248233_94249577_94249889_94250066_94250275_94250352_94250501_94250654_94250770_94251997_94252176_94252475_94252644_94254258_94254436_94254522_94254650_94254867_94254935_94255177_94255266_94255598_94255746_94255851_94256056_94258415_94258509_94259006_94259169_94259266_94259445_94262444_94262634_94263698_94263831_94264452_94264515_94264734_94264861_94265547_94265686_94265892_94266019_94266366_94266544_94283696
transcript_22659.nnic	chr11	-	1044	4	NNC	ENSMUSG00000020865.17	novel	5005	31	NA	NA	-456	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	32.8937684067971	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	479	False	NA	-4	True	AATAAA	-17	NA	94242468	94234120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_94234602_94236772_94236968_94241761_94241929_94242267
transcript_22660.nic	chr11	-	1172	4	ISM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	40849	0	-941	0	intron_retention	FALSE	canonical	3	69	junction_3	10.6249183003395	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	-6	True	NA	-4	True	AATAAA	-17	NA	94242953	94234120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624
transcript_22662.known	chr11	-	3415	18	FSM	ENSMUSG00000039110.16	ENSMUST00000123496.8	3415	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.876450848573608	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATTTCCATCGTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	94412568	94392172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94392347_94393951_94394123_94394296_94394443_94394875_94394992_94395698_94395821_94396250_94396641_94397201_94397349_94398372_94398561_94398929_94399120_94400068_94400181_94400582_94400699_94400784_94400901_94402450_94402593_94403053_94403604_94404343_94404448_94404607_94404768_94405353_94405482_94412225
transcript_22663.known	chr11	-	4203	9	FSM	ENSMUSG00000039096.11	ENSMUST00000132274.8	4203	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	12.2270192606375	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCGTAGCTCCTCCTT	3195	False	NA	1	True	AATAAA	-20	NA	94440081	94430623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94433474_94433706_94433811_94434119_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296_94439431_94439804
transcript_22670.known	chr11	-	3154	16	FSM	ENSMUSG00000076435.4	ENSMUST00000103164.4	3154	16	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	8.37615663654877	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATTGGACTGTAACTC	7285	False	NA	-4	True	AATAAA	-19	NA	94492697	94447927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94449184_94449465_94449535_94449690_94449802_94450288_94450431_94452065_94452218_94453636_94453745_94460135_94460213_94460766_94460859_94461128_94461287_94461439_94461536_94462096_94462263_94462387_94462507_94463051_94463106_94463347_94463477_94463858_94464055_94492468
transcript_22684.known	chr11	-	2444	9	FSM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_8	32.4422563950167	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGCTTGGAGGAAGAC	4403	False	NA	-5	True	AATAAA	-18	NA	94544790	94535821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
transcript_22698.known	chr11	+	2837	7	FSM	ENSMUSG00000020869.9	ENSMUST00000021239.7	2837	7	0	0	0	0	multi-exon	FALSE	canonical	3	2480	junction_6	120.266371026983	3596	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTTTGTGCTG	NA	False	NA	27	True	ATTAAA	-18	NA	94520592	94536042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94520936_94522906_94522967_94525370_94525530_94525737_94525843_94529356_94529430_94532045_94532220_94534119
transcript_22713.known	chr11	+	756	4	FSM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_3	47.8632310744781	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAAGGGACAGGACAG	NA	False	NA	19	True	NA	NA	NA	94544592	94550915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94544668_94547312_94547445_94547808_94547877_94550434
transcript_22715.known	chr11	+	655	4	FSM	ENSMUSG00000024414.14	ENSMUST00000132813.8	655	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	381.100453365718	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGAGATGGCTCAGCAGT	NA	False	NA	NA	False	NA	NA	NA	94544601	94550744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94544668_94547233_94547445_94547808_94547877_94550434
transcript_22716.known	chr11	+	439	4	FSM	ENSMUSG00000024414.14	ENSMUST00000125148.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	344.111416065592	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTAGTCTGCCCAAGGGT	NA	False	NA	NA	False	AAAACA	-19	NA	94544856	94550543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94544987_94547312_94547445_94547808_94547877_94550434
transcript_22730.known	chr11	-	3442	11	FSM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	13.508885964431	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAATGTCCTTGTTTGCT	2205	False	NA	-6	True	AATATA	-16	NA	94568341	94554676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94555736_94557023_94557358_94557924_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133_94561627_94568098
transcript_22739.nic	chr11	-	4017	10	NIC	ENSMUSG00000020868.16	novel	3442	11	NA	NA	-8	0	intron_retention	FALSE	canonical	3	112	junction_6	13.3499895963339	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAATGTCCTTGTTTGCT	2197	False	NA	-6	True	AATATA	-16	NA	94568349	94554676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_94555736_94557023_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133_94561627_94568098
transcript_22742.nnic	chr11	-	2697	5	NNC	ENSMUSG00000075611.6	novel	375	3	NA	NA	-3419	1844	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	1.58113883008419	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTTTCTCTGTA	1924	False	NA	NA	False	AATAAA	-24	NA	94652008	94645957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_94647982_94648187_94648387_94648522_94648622_94649100_94649124_94651656
transcript_22744.nnic	chr11	-	760	4	NNC	ENSMUSG00000083227.2	novel	354	3	NA	NA	-4276	-179	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0.471404520791032	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGCTGGTTGTTTTGAAA	NA	False	NA	-1	True	AATAAA	-17	NA	94692879	94688053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_94688355_94688551_94688636_94689121_94689145_94692527
transcript_2275.known	chr1	-	1600	2	FSM	ENSMUSG00000026004.16	ENSMUST00000189846.2	1600	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAGAAAAAAGAAAGG	6640	False	NA	NA	False	AATAAA	-44	NA	66856705	66839900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_66841328_66856532
transcript_22751.known	chr11	+	4508	10	FSM	ENSMUSG00000038976.13	ENSMUST00000038696.12	4508	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	8.0691456246068	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTCGCCTGGTTTCTTGA	NA	False	NA	20	True	CATAAA	-16	NA	94881860	94897725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94883745_94887360_94887494_94888819_94888941_94891032_94891138_94892044_94892181_94892667_94892821_94892904_94892959_94895386_94895617_94895846_94895944_94896130
transcript_22754.known	chr11	+	3318	10	FSM	ENSMUSG00000047181.13	ENSMUST00000055947.10	3318	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.496903994999953	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATCTTCTTGTCTGGGAC	NA	False	NA	NA	False	AATAAA	-17	NA	94900704	94916913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_94901403_94905177_94905233_94910186_94910354_94910755_94911045_94912023_94912112_94912211_94912287_94912374_94912535_94914084_94914205_94914285_94914442_94915403
transcript_22755.known	chr11	-	2246	11	FSM	ENSMUSG00000038967.14	ENSMUST00000038431.8	2246	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	6.12290780593665	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGCCTGGCTTCCTTGC	6074	False	NA	-1	True	NA	NA	NA	94932180	94917083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94918149_94918690_94918805_94919304_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661_94922847_94923290_94923363_94930174_94930317_94931964
transcript_22762.nnic	chr11	-	4863	27	NNC	ENSMUSG00000001507.17	novel	4861	26	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	14.1509194298483	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTGTCTGCTCCTACCT	8774	False	NA	0	True	AATAAA	-22	NA	94967638	94935299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537_94959666_94966956_94967498_94967593
transcript_22763.known	chr11	-	4861	26	FSM	ENSMUSG00000001507.17	ENSMUST00000001548.14	4861	26	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_7	7.12179752590594	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTGTCTGCTCCTACCT	8872	False	NA	0	True	AATAAA	-22	NA	94967540	94935299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537_94959666_94966956
transcript_22768.known	chr11	+	2607	3	FSM	ENSMUSG00000001510.9	ENSMUST00000092768.7	2607	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGTACTCTTTGAACTA	467	False	NA	NA	False	NA	NA	NA	95010944	95016122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95011473_95012533_95012725_95014234
transcript_22769.known	chr11	-	2282	3	FSM	ENSMUSG00000020871.9	ENSMUST00000021241.8	2282	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGTCCTGAGTATATTA	4310	False	NA	NA	False	ATTAAA	-25	NA	95037089	95031272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95032296_95032614_95032806_95036021
transcript_22774.known	chr11	-	3414	15	FSM	ENSMUSG00000038909.17	ENSMUST00000092766.12	3414	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	245.342544793426	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95200428	95165084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200362
transcript_22775.known	chr11	-	3560	15	FSM	ENSMUSG00000038909.17	ENSMUST00000107734.10	3560	15	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_10	130.748239149965	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_2278.known	chr1	-	1916	11	FSM	ENSMUSG00000026003.6	ENSMUST00000027153.6	1916	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_4	12.5315601582564	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCCCTGGGGAATGAGA	NA	False	NA	-19	True	AATAAA	-29	NA	66902436	66869997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_66870687_66876120_66876208_66877437_66877566_66880780_66880895_66882239_66882342_66884326_66884492_66887558_66887626_66892285_66892451_66893782_66893921_66896557_66896714_66902331
transcript_22781.known	chr11	-	3324	14	FSM	ENSMUSG00000038909.17	ENSMUST00000072621.12	3324	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	277.302283100983	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95200428	95165084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200362
transcript_22782.known	chr11	-	3470	14	FSM	ENSMUSG00000038909.17	ENSMUST00000107733.10	3470	14	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_9	177.090656421269	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_22791.nic	chr11	-	3468	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-18	-3	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	222.401444165419	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTCTGACTGCTCTGAA	NA	False	NA	-8	True	AATAAA	-14	NA	95201090	95165087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_22793.nic	chr11	-	3378	13	NIC	ENSMUSG00000038909.17	novel	3470	14	NA	NA	-18	-3	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	258.98824244012	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTCTGACTGCTCTGAA	NA	False	NA	-8	True	AATAAA	-14	NA	95201090	95165087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_22802.nic	chr11	+	2157	9	NIC	ENSMUSG00000038893.13	novel	2317	8	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	20.0997512422418	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGTTTTCTGAATACC	NA	False	NA	13	True	AATAAA	-15	NA	95227835	95272698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_95227877_95228044_95228088_95254824_95254995_95262263_95262360_95265807_95265919_95266454_95266590_95268308_95268508_95269644_95269796_95271487
transcript_22805.known	chr11	+	2317	8	FSM	ENSMUSG00000038893.13	ENSMUST00000037502.7	2317	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_6	7.85324578679129	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGTTTTCTGAATACC	NA	False	NA	13	True	AATAAA	-15	NA	95227843	95272698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95228088_95254824_95254995_95262263_95262360_95265807_95265919_95266454_95266590_95268308_95268508_95269644_95269796_95271487
transcript_22806.known	chr11	+	1523	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275517	95282602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
transcript_22809.known	chr11	+	1299	9	FSM	ENSMUSG00000020873.16	ENSMUST00000131193.3	1299	9	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	72.2789734293453	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275716	95282602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95275940_95276626_95276731_95277336_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
transcript_22816.nic	chr11	+	1903	8	NIC	ENSMUSG00000020873.16	novel	1523	9	NA	NA	2	0	intron_retention	FALSE	canonical	3	260	junction_3	11.771636613973	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275718	95282602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_95275940_95276626_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
transcript_22819.known	chr11	+	2881	11	FSM	ENSMUSG00000057522.16	ENSMUST00000107724.9	2881	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	65.0422170593838	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304905	95384232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
transcript_2282.known	chr1	-	1385	10	FSM	ENSMUSG00000026000.17	ENSMUST00000119559.8	1385	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	165.875529714376	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67077993	67042533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077930
transcript_22828.known	chr11	+	3063	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304923	95384232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
transcript_2283.nic	chr1	-	1424	10	NIC	ENSMUSG00000026000.17	novel	1385	10	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_9	146.548774167089	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67078062	67042533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077960
transcript_22835.known	chr11	-	2099	2	FSM	ENSMUSG00000046719.8	ENSMUST00000058866.8	2099	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTATTCTAAGTAATCCAG	NA	False	NA	1	True	AATAAA	-20	NA	95405396	95400670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95402359_95404985
transcript_22841.known	chr11	-	3446	6	FSM	ENSMUSG00000000120.7	ENSMUST00000000122.7	3446	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	5.88557558782486	714	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAACGATGCCAAGAGAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	95478561	95459643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478309
transcript_22850.known	chr11	+	1799	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	0	0	0	0	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	1158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	11	True	AATAAA	-25	NA	95557782	95571599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
transcript_22857.known	chr11	+	610	2	FSM	ENSMUSG00000038845.12	ENSMUST00000127031.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	4618	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAACTGTGATTTGCTACT	NA	False	NA	NA	False	NA	NA	NA	95557835	95559439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95557869_95558862
transcript_22859.nic	chr11	+	3058	6	NIC	ENSMUSG00000075595.10	novel	2663	5	NA	NA	-110	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_2	14.0285423334001	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGTGATTCTCAAAGAT	NA	False	NA	5	True	GATAAA	-15	NA	95603726	95655537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_95604055_95639825_95640974_95643700_95643849_95644187_95644304_95644736_95644882_95654364
transcript_2286.known	chr1	-	4461	9	FSM	ENSMUSG00000026000.17	ENSMUST00000113979.10	4461	9	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_5	113.959902487673	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCGGGTACTGTTGTTTG	NA	False	NA	-2	True	AATAAA	-17	NA	67078031	67039675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653
transcript_22862.known	chr11	-	4006	8	FSM	ENSMUSG00000018381.16	ENSMUST00000059026.10	4006	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	1.51185789203691	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCAAGGCCGGGTGGGCA	NA	False	NA	NA	False	AATAAA	-35	NA	95733235	95720899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95723703_95724034_95724161_95724465_95724627_95724828_95724925_95725131_95725218_95726603_95726781_95727895_95728064_95732846
transcript_22864.known	chr11	+	563	4	FSM	ENSMUSG00000038811.14	ENSMUST00000107711.8	563	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	5.71547606649408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733134	95736560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95733253_95734637_95734722_95735857_95735967_95736308
transcript_22865.known	chr11	+	558	4	FSM	ENSMUSG00000038811.14	ENSMUST00000107714.9	558	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	4.54606056566195	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733120	95736560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95733253_95734637_95734722_95735876_95735967_95736308
transcript_22866.known	chr11	+	590	3	FSM	ENSMUSG00000050860.7	ENSMUST00000150134.2	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	1.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACTACAATGAGTACATG	2197	False	NA	NA	False	NA	NA	NA	95715324	95721527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95715536_95719491_95719602_95721258
transcript_22867.known	chr11	+	1910	3	FSM	ENSMUSG00000050860.7	ENSMUST00000054173.4	1910	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	13	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGGACTTGTTCTCTTG	2198	False	NA	20	True	AATAAA	-16	NA	95715325	95722966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95715536_95719491_95719602_95721376
transcript_22868.known	chr11	+	573	4	FSM	ENSMUSG00000038811.14	ENSMUST00000100532.10	573	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.71722460186015	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733493	95736560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95733622_95734637_95734722_95735857_95735967_95736308
transcript_22869.known	chr11	+	1269	2	FSM	ENSMUSG00000086015.2	ENSMUST00000146868.2	1269	2	0	0	0	0	multi-exon	TRUE	canonical	3	111	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATTATAAATGTATATT	1026	False	NA	NA	False	NA	NA	NA	95749690	95751870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95749909_95750819
transcript_2287.known	chr1	+	5555	38	FSM	ENSMUSG00000025991.9	ENSMUST00000027144.8	5555	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.20791570269358	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCAGTTGAATTCTTT	1281	False	NA	NA	False	AATAAA	-14	NA	67162184	67270418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_67162450_67178915_67179026_67182023_67182169_67183024_67183115_67184945_67185003_67187868_67187962_67191440_67191531_67195291_67195421_67195982_67196090_67196897_67197037_67198022_67198101_67200017_67200117_67201739_67201836_67204540_67204731_67205527_67205686_67207399_67207529_67210007_67210153_67211814_67212026_67213461_67213661_67216067_67216245_67219229_67219349_67234301_67234444_67235696_67235763_67236163_67236228_67237459_67237642_67243666_67243862_67244290_67244359_67245914_67245991_67248754_67248833_67251561_67251670_67253175_67253266_67254568_67254740_67257010_67257086_67259661_67259761_67266282_67266343_67267394_67267508_67268547_67268678_67269406
transcript_22874.nnic	chr11	-	1792	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	-5	1270	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.1068669888635	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGAGCCTTCATGTGG	2885	False	NA	NA	False	NA	NA	NA	95805722	95755498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_95755676_95756880_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
transcript_22876.nnic	chr11	-	2173	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	-81	1270	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.1068669888635	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGAGCCTTCATGTGG	2809	False	NA	NA	False	NA	NA	NA	95805798	95755498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_95755699_95756598_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
transcript_22879.known	chr11	-	1722	11	FSM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	6.67907179179862	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGAGCTAGGGTAGGAC	2890	False	NA	NA	False	NA	NA	NA	95805717	95756768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
transcript_22899.nic	chr11	-	2484	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-86	726	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	177.836138924832	913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTATGGCTGAGCT	NA	False	NA	26	True	AAGAAA	-8	NA	95873523	95853535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
transcript_2290.known	chr1	-	5659	11	FSM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	5.88642506110457	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATGAGACTCAACCTGA	NA	False	NA	32	True	NA	NA	NA	71142305	71066656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71106266_71106348_71113701_71114640_71127267_71127411_71128629_71128687_71141826
transcript_22915.known	chr11	-	576	6	FSM	ENSMUSG00000013415.10	ENSMUST00000152896.8	576	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	264.532795698378	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAAGGCCATCAGCGTGC	NA	False	NA	NA	False	AATAGA	-31	NA	95873420	95863969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
transcript_22916.known	chr11	-	823	1	FSM	ENSMUSG00000103376.2	ENSMUST00000194862.2	823	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTATTCCTAAGAACT	NA	False	NA	NA	False	AATAAA	-12	NA	95897981	95897158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95897200_95898000
transcript_22917.known	chr11	-	8378	15	FSM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_5	71.7782867514933	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGAGTGTGTCTGTGCTTC	NA	False	NA	-5	True	AATAAA	-19	NA	95896766	95847988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
transcript_22920.known	chr11	+	1004	8	FSM	ENSMUSG00000006058.11	ENSMUST00000006217.10	1004	8	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_5	23.859281341282	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3197	False	NA	21	True	AATAAA	-43	NA	95925710	95938256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95937105_95937181_95938020
transcript_22924.known	chr11	+	849	7	FSM	ENSMUSG00000006058.11	ENSMUST00000107700.4	849	7	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	239.545866635645	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3277	False	NA	21	True	AATAAA	-43	NA	95925790	95938256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95938020
transcript_22928.known	chr11	+	484	4	FSM	ENSMUSG00000006058.11	ENSMUST00000150946.8	484	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	334.70617296701	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3263	False	NA	NA	False	NA	NA	NA	95925776	95930704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95930527
transcript_22932.known	chr11	-	3997	7	FSM	ENSMUSG00000014349.8	ENSMUST00000100528.5	3997	7	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_3	37.418429802557	1233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTTGGAATGAACTTTT	5467	False	NA	NA	False	AATAAA	-19	NA	95956214	95938257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95941241_95942559_95942651_95946663_95946777_95949141_95949254_95951762_95951951_95953820_95953894_95955777
transcript_22939.known	chr11	-	691	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107686.8	691	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	4410.8346149	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTGCCTGTGCCTGTC	3568	False	NA	-6	True	NA	NA	NA	95966407	95963812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966252
transcript_22940.known	chr11	-	596	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	1704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	3530	False	NA	-9	True	NA	NA	NA	95966445	95963815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
transcript_22941.known	chr11	-	4715	5	FSM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	0	0	0	0	multi-exon	FALSE	canonical	3	2808	junction_4	3276.79938163751	1433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGGTCCAATTTCTGAT	3479	False	NA	NA	False	TTTAAA	-2	NA	95966496	95959677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966452
transcript_22951.known	chr11	-	1621	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATGTGAGTACACTATC	4211	False	NA	-2	True	NA	NA	NA	96002790	95990151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
transcript_22957.known	chr11	+	2206	2	FSM	ENSMUSG00000049604.4	ENSMUST00000062709.4	2206	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCCCTCTTCTTCCTCA	3944	False	NA	NA	False	AATAAA	-20	NA	96085141	96088273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96085873_96086798
transcript_22961.known	chr11	+	3257	2	FSM	ENSMUSG00000078706.5	ENSMUST00000150490.3	3257	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATCAATTTTTTTTTC	8814	False	NA	NA	False	NA	NA	NA	96142469	96155524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96142640_96152437
transcript_22962.known	chr11	-	2551	9	FSM	ENSMUSG00000020876.15	ENSMUST00000021246.9	2551	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_6	14.0529133990073	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCAAAGCCCTGGCTGC	NA	False	NA	-7	True	AATAAA	-15	NA	96668357	96658380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96666199_96666260_96667793_96667888_96668280
transcript_22968.known	chr11	-	2197	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	17.839419776416	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTGTTGCAATTTG	NA	False	NA	-16	True	AATAAA	-13	NA	96668385	96658702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
transcript_22973.nnic	chr11	+	1199	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	-29	-3	at_least_one_novel_splicesite	FALSE	canonical	3	188	junction_5	206.095705923243	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTTGATTTCTGTCTT	NA	False	NA	12	True	AATAAA	-13	NA	96679923	96698972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
transcript_22976.nnic	chr11	+	1375	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	-29	-3	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_4	289.614916742905	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTTGATTTCTGTCTT	NA	False	NA	12	True	AATAAA	-13	NA	96679923	96698972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441_96697591_96698628
transcript_22982.nic	chr11	+	1487	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	-61	1244	-29	-753	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTAATCCTAAAACCT	NA	False	NA	92	True	NA	NA	NA	96679923	96698222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
transcript_22983.nic	chr11	+	2237	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	-61	494	-29	-3	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTTGATTTCTGTCTT	NA	False	NA	12	True	AATAAA	-13	NA	96679923	96698972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
transcript_22984.nnic	chr11	+	1050	5	NNC	ENSMUSG00000018666.14	novel	912	5	NA	NA	-29	-3	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_4	247.637335634189	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTTGATTTCTGTCTT	NA	False	NA	12	True	AATAAA	-13	NA	96679923	96698972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96698628
transcript_22985.known	chr11	+	2377	5	FSM	ENSMUSG00000018666.14	ENSMUST00000134585.8	2377	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	281.892155797213	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679962	96698975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441
transcript_22990.known	chr11	+	1824	4	FSM	ENSMUSG00000018666.14	ENSMUST00000018810.10	1824	4	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_3	65.5455736279897	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATCTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96679952	96694795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553
transcript_22993.nic	chr11	+	605	3	ISM	ENSMUSG00000018666.14	ENSMUST00000018810.10	1824	4	-29	2369	-29	195	5prime_fragment	FALSE	canonical	3	748	junction_1	2	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGGTAAAGCTAGAACT	NA	False	NA	40	True	GATAAA	-31	NA	96679923	96692426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_96680180_96691596_96691774_96692254
transcript_22994.known	chr11	+	814	2	FSM	ENSMUSG00000018666.14	ENSMUST00000141257.2	814	2	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_1	0	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTGCTTGCTGGTTT	NA	False	NA	NA	False	TATAAA	-27	NA	96680000	96692231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96680180_96691596
transcript_22995.known	chr11	+	912	5	FSM	ENSMUSG00000018666.14	ENSMUST00000079702.4	912	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	308.662032002642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTTATGAAGTAGCTTA	NA	False	NA	NA	False	AATATA	-14	NA	96680074	96699366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96699009
transcript_23.known	ERCC-00062	+	1007	1	FSM	ERCC-00062A	DQ516786	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AATACA	-36	NA	0	1007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00062_+_0_1000
transcript_2300.known	chr1	+	2845	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_4	38.3577313661217	2113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTGCTGGCTGA	NA	False	NA	15	True	AATAAA	-15	NA	71596308	71618790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
transcript_23034.known	chr11	-	4596	5	FSM	ENSMUSG00000038615.18	ENSMUST00000167149.8	4596	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	530.254891538023	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96720328	96708239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720236
transcript_23035.known	chr11	-	4654	5	FSM	ENSMUSG00000038615.18	ENSMUST00000081775.12	4654	5	0	0	0	0	multi-exon	FALSE	canonical	3	711	junction_4	320.112870719064	1124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96720794	96708239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720644
transcript_23055.nnic	chr11	-	3566	4	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	45	0	intron_retention	FALSE	canonical	3	133	junction_3	578.474430434627	275	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	-23	True	AATAAA	-16	NA	96714908	96708256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713113_96714770
transcript_23059.nnic	chr11	-	3623	4	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	-73	0	intron_retention	FALSE	canonical	2	47	junction_3	618.964906562202	211	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	-23	True	AATAAA	-16	NA	96713624	96708256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96713462
transcript_23060.nnic	chr11	-	4088	4	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	-57	0	intron_retention	FALSE	canonical	3	150	junction_3	570.471345078397	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	-23	True	AATAAA	-16	NA	96715010	96708256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96714383
transcript_23061.known	chr11	-	486	4	FSM	ENSMUSG00000038615.18	ENSMUST00000142065.2	486	4	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGAGACCCTCTTAGCA	NA	False	NA	NA	False	AGTAAA	-34	NA	96714834	96711295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
transcript_23062.known	chr11	-	851	4	FSM	ENSMUSG00000038615.18	ENSMUST00000126949.8	851	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	612.843826399153	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCAGCTCGAAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	96714953	96710918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714901
transcript_23098.known	chr11	-	582	2	FSM	ENSMUSG00000038615.18	ENSMUST00000135836.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAATATTCTGGTCCTT	NA	False	NA	NA	False	TTTAAA	-10	NA	96720327	96718558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96719050_96720236
transcript_23105.known	chr11	+	930	9	FSM	ENSMUSG00000018672.16	ENSMUST00000018816.14	930	9	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_8	11.8420595759353	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCTTTCTTGACTTTG	775	False	NA	11	True	AATAAA	-22	NA	96740701	96752029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96740823_96741498_96741568_96744260_96744343_96744883_96744976_96745409_96745466_96746081_96746160_96747497_96747550_96748378_96748418_96751688
transcript_23106.known	chr11	+	1045	2	FSM	ENSMUSG00000018672.16	ENSMUST00000155696.2	1045	2	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAGAAAAAGAAAA	769	False	NA	NA	False	NA	NA	NA	96740695	96742416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96740823_96741498
transcript_23115.known	chr11	-	2250	14	FSM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	0	0	0	0	multi-exon	FALSE	canonical	3	831	junction_13	105.723262738262	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCACCTTTACTGGCT	NA	False	NA	-13	True	GATAAA	-16	NA	96807322	96798251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
transcript_23128.known	chr11	-	2201	13	FSM	ENSMUSG00000018669.15	ENSMUST00000134732.8	2201	13	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	315.392733570209	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCACCTTTACTGGCT	NA	False	NA	-13	True	GATAAA	-16	NA	96807322	96798251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96804207_96804309_96804490_96804623_96806976_96807023_96807209
transcript_2314.known	chr1	+	1631	12	FSM	ENSMUSG00000026192.14	ENSMUST00000155769.8	1631	12	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_4	24.5299614403379	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCACTCTGTAGACCAGG	NA	False	NA	NA	False	NA	NA	NA	71596337	71612522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066
transcript_2315.nic	chr1	+	1347	11	ISM	ENSMUSG00000026192.14	ENSMUST00000155769.8	1631	12	-194	2456	-165	-2053	5prime_fragment	TRUE	canonical	3	576	junction_4	25.6717743835521	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAACTACTGTGTTCTTC	NA	False	NA	NA	False	AAAAAG	-6	NA	71596143	71610066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998
transcript_23172.known	chr11	-	1994	7	FSM	ENSMUSG00000018659.13	ENSMUST00000018803.12	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_4	10.434983894999	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTAACTTGATTCCAT	NA	False	NA	-2	True	AATAAA	-25	NA	96834812	96828650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96829910_96830080_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235_96833361_96834556
transcript_23174.known	chr11	-	3055	7	FSM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_6	154.880599172395	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGTCTGCGTTTGGCAGT	NA	False	NA	-17	True	AATAAA	-16	NA	96868537	96844166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854271_96868446
transcript_23178.known	chr11	+	2801	6	FSM	ENSMUSG00000078700.11	ENSMUST00000135825.9	2801	6	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	5.35163526410386	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAACAAACAA	4787	False	NA	NA	False	NA	NA	NA	96834990	96855886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96835041_96835670_96835920_96843406_96843555_96850379_96851108_96851686_96851823_96854396
transcript_2319.known	chr1	+	2576	4	FSM	ENSMUSG00000026192.14	ENSMUST00000136443.2	2576	4	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_2	11.0855260988773	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	71596371	71602357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047
transcript_23190.known	chr11	+	1342	2	FSM	ENSMUSG00000047040.10	ENSMUST00000054311.6	1342	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGGTCTTATTTATACAC	NA	False	NA	NA	False	AATAAA	-15	NA	96820127	96826474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96820336_96825340
transcript_23191.known	chr11	+	1242	2	FSM	ENSMUSG00000047040.10	ENSMUST00000062172.6	1242	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCACGGTCTTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	96820219	96826469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96820336_96825343
transcript_23196.known	chr11	+	3621	2	FSM	ENSMUSG00000038560.8	ENSMUST00000107622.2	3621	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCACACTCTCGCTTTGT	NA	False	NA	0	True	AATAAA	-10	NA	96909558	96915557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96909854_96912231
transcript_23198.nnic	chr11	+	1523	8	NNC	ENSMUSG00000020877.12	novel	1530	8	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	41.1958983494271	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGAACTGGATCTCA	NA	False	NA	9	True	AATAAA	-15	NA	96920879	96924776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_96920999_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
transcript_23199.nnic	chr11	+	1371	7	NIC	ENSMUSG00000020877.12	novel	1530	8	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	43.8422044255178	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGAACTGGATCTCA	NA	False	NA	9	True	AATAAA	-15	NA	96920740	96924776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_96920882_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
transcript_232.known	SIRV7	-	2247	6	FSM	SIRV7A	SIRV702	2247	6	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	114916	1000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
transcript_23201.known	chr11	+	1530	8	FSM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	16.9597362320652	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGATCTCAAGTCTATT	NA	False	NA	17	True	AATAAA	-23	NA	96920763	96924784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
transcript_23202.known	chr11	+	605	3	FSM	ENSMUSG00000020877.12	ENSMUST00000133054.8	605	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	14	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGCTTTAATTTTTTTT	NA	False	NA	NA	False	GATAAA	-17	NA	96920777	96922032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96920882_96921241_96921416_96921705
transcript_23213.known	chr11	+	3771	23	FSM	ENSMUSG00000038534.20	ENSMUST00000090020.13	3771	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	33.8534762061397	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	9941	False	NA	22	True	AATAAA	-18	NA	96941453	96959730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
transcript_2322.known	chr1	-	8315	46	FSM	ENSMUSG00000026193.16	ENSMUST00000055226.13	8315	46	0	0	0	0	multi-exon	FALSE	canonical	3	1514	junction_37	371.719226311845	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGTGGACGTCATTTC	NA	False	NA	-10	True	AATAAA	-14	NA	71692334	71624682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
transcript_23220.known	chr11	+	1708	5	FSM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	35.8643276808586	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	873	False	NA	10	True	NA	NA	NA	96932385	96940039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
transcript_23225.nnic	chr11	+	1320	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	-4	-222	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTAAGAATTATTTT	869	False	NA	20	True	AATAAA	-21	NA	96932381	96939817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
transcript_23226.nnic	chr11	+	1542	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	869	False	NA	10	True	NA	NA	NA	96932381	96940039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
transcript_23229.known	chr11	+	3535	24	FSM	ENSMUSG00000038534.20	ENSMUST00000168565.2	3535	24	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	38.5858236208462	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	22	True	AATAAA	-18	NA	96941645	96959730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_96941780_96943050_96943203_96943352_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949437_96949936_96949939_96949942_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
transcript_23230.known	chr11	-	2488	6	FSM	ENSMUSG00000001444.3	ENSMUST00000001484.3	2488	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.26491106406735	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCCCTCCTTCTGTGGCT	NA	False	NA	NA	False	AATAAA	-16	NA	97006157	96988896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_96990205_96990595_96990658_96990752_96990912_96992304_96992427_96992769_96992925_97005475
transcript_23234.known	chr11	-	3288	10	FSM	ENSMUSG00000038517.16	ENSMUST00000118375.8	3288	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	16.2343942158479	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGTGCGCTCAGGCT	7533	False	NA	-6	True	AATAAA	-13	NA	97040872	97027002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97040816
transcript_23235.nic	chr11	-	3557	10	NIC	ENSMUSG00000038517.16	novel	3288	10	NA	NA	216	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_9	17.5499287747842	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCGCTCAGGCTGTGC	6300	False	NA	-2	True	AATAAA	-17	NA	97042105	97026998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97041784
transcript_23236.nic	chr11	-	3396	10	NIC	ENSMUSG00000038517.16	novel	3288	10	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	14.4990421139544	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCGCTCAGGCTGTGC	6046	False	NA	-2	True	AATAAA	-17	NA	97042359	97026998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037457_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97042199
transcript_23238.known	chr11	-	2391	10	FSM	ENSMUSG00000038517.16	ENSMUST00000107614.8	2391	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	16.5529453572468	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCACACTGATGCCAGCC	6543	False	NA	NA	False	NA	NA	NA	97041862	97027924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97041784
transcript_23239.nic	chr11	-	3399	10	NIC	ENSMUSG00000038517.16	novel	2391	10	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	13.1487219488773	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCGCTCAGGCTGTGC	6046	False	NA	-2	True	AATAAA	-17	NA	97042359	97026998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_97028502_97029447_97030161_97030297_97030417_97037125_97037188_97037280_97037460_97038198_97038380_97039454_97039560_97039770_97039894_97040187_97040442_97042199
transcript_2324.known	chr1	-	7965	45	FSM	ENSMUSG00000026193.16	ENSMUST00000187938.7	7965	45	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_7	505.24113791141	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	NA	False	NA	-9	True	AATAAA	-15	NA	71692331	71624681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636832_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
transcript_2326.known	chr1	-	8043	45	FSM	ENSMUSG00000026193.16	ENSMUST00000188894.7	8043	45	0	0	0	0	multi-exon	TRUE	canonical	3	355	junction_21	441.858289425336	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGACGTCATTTCTTTT	NA	False	NA	-6	True	AATAAA	-18	NA	71692331	71624678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
transcript_23260.nnic	chr11	-	4064	23	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-70	976	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	239.281487301649	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGGCCTTCTGTCCCTT	NA	False	NA	-7	True	GATAAA	-17	NA	97078777	97052359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371_97078589_97078668
transcript_23264.known	chr11	-	5894	22	FSM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	0	0	0	0	multi-exon	TRUE	canonical	3	682	junction_21	133.681077140662	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGCTGCTTCGTTCTTT	NA	False	NA	-4	True	AATAAA	-25	NA	97078707	97050539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
transcript_2328.known	chr1	-	7797	44	FSM	ENSMUSG00000026193.16	ENSMUST00000186129.7	7797	44	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_13	520.876343765833	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGTGGACGTCATTTC	NA	False	NA	-10	True	AATAAA	-14	NA	71692359	71624682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
transcript_23298.known	chr11	-	4215	23	FSM	ENSMUSG00000001441.14	ENSMUST00000001480.14	4215	23	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_18	36.1553409289133	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGTTGGCCTGGTTCTT	NA	False	NA	-2	True	AATAAA	-13	NA	97171464	97096669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97098095_97103105_97103154_97103857_97104014_97104596_97104705_97108616_97108674_97109333_97109477_97113776_97113997_97115484_97115620_97117554_97117695_97120655_97120720_97122714_97122825_97125880_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97149099_97149178_97158420_97158506_97171026
transcript_233.known	SIRV7	-	428	3	FSM	SIRV7A	SIRV704	428	3	0	0	0	0	multi-exon	FALSE	canonical	3	4944	junction_1	1233	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTCGTATTTGCTGCT	NA	False	NA	NA	False	ATTAAA	-33	NA	114738	55849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV7_-_56098_78841_78964_114680
transcript_2332.nic	chr1	-	5806	34	ISM	ENSMUSG00000026193.16	ENSMUST00000055226.13	8315	46	-66	16858	-41	1715	5prime_fragment	FALSE	canonical	3	1514	junction_25	200.094637847946	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGACAGGACCAATGAA	NA	False	NA	NA	False	NA	NA	NA	71692400	71641540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
transcript_23337.nic	chr11	-	2565	20	ISM	ENSMUSG00000001441.14	ENSMUST00000001480.14	4215	23	-52	8000	-52	-307	5prime_fragment	FALSE	canonical	3	268	junction_15	25.7453973510712	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAATTGAAAGAGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	97171516	97104669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_97104705_97108616_97108674_97109333_97109477_97113776_97113997_97115484_97115620_97117554_97117695_97120655_97120720_97122714_97122825_97125880_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97149099_97149178_97158420_97158506_97171026
transcript_23348.known	chr11	-	1413	3	FSM	ENSMUSG00000001441.14	ENSMUST00000163950.2	1413	3	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_1	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAGAAGAAAAA	NA	False	NA	NA	False	GATAAA	-32	NA	97171380	97148203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97149178_97158420_97158506_97171026
transcript_23352.known	chr11	+	2431	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	0	0	0	0	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCCAGCTTAAAATTACT	NA	False	NA	14	True	NA	NA	NA	97206541	97220746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
transcript_23365.known	chr11	+	493	3	FSM	ENSMUSG00000018882.13	ENSMUST00000132168.2	493	3	0	0	0	0	multi-exon	FALSE	canonical	3	2928	junction_1	123	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATATCATATTGATTTT	NA	False	NA	NA	False	NA	NA	NA	97206733	97212551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97206766_97207572_97207751_97212268
transcript_23369.known	chr11	+	7015	10	FSM	ENSMUSG00000038485.7	ENSMUST00000045540.4	7015	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	9.34258800425685	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTACTTGGCTTTGTTT	NA	False	NA	8	True	AATAAA	-16	NA	97253376	97289368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97254250_97263891_97263957_97267262_97267368_97267822_97267925_97268761_97268893_97269368_97269538_97273725_97273855_97279937_97280074_97280391_97280543_97284214
transcript_23373.nnic	chr11	+	2338	9	NIC	ENSMUSG00000038485.7	novel	7131	10	NA	NA	-220	-4911	combination_of_known_splicesites	FALSE	canonical	3	14	junction_3	8.78564169540279	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTAGCTTTTAGTATTT	NA	False	NA	NA	False	NA	NA	NA	97253040	97284457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_97254250_97263891_97263957_97267262_97267368_97268761_97268893_97269368_97269538_97273725_97273855_97279937_97280074_97280391_97280543_97284214
transcript_23374.nnic	chr11	+	5784	9	NIC	ENSMUSG00000038485.7	novel	7131	10	NA	NA	-220	-1465	combination_of_known_splicesites	FALSE	canonical	3	14	junction_3	8.78564169540279	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAAGAAAGAAA	NA	False	NA	NA	False	AGTAAA	-40	NA	97253040	97287903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_97254250_97263891_97263957_97267262_97267368_97268761_97268893_97269368_97269538_97273725_97273855_97279937_97280074_97280391_97280543_97284214
transcript_23377.known	chr11	+	5816	24	FSM	ENSMUSG00000049807.17	ENSMUST00000121799.8	5816	24	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	11.2785659172316	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGTCTCGCTTGTTTGG	NA	False	NA	14	True	AATAAA	-21	NA	97306358	97393228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97306494_97335009_97335172_97337334_97337378_97338995_97339092_97339270_97339350_97339478_97339534_97342217_97343371_97344690_97344847_97345039_97345152_97345271_97345330_97347280_97347425_97354209_97354528_97355620_97355683_97355884_97356016_97356835_97356958_97357257_97357414_97361193_97361273_97365840_97365915_97366149_97366240_97366873_97367000_97380897_97380940_97381959_97382057_97383876_97383909_97390934
transcript_23383.known	chr11	+	612	4	FSM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	12.3917535302941	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	29	True	AATATA	-14	NA	97489336	97513719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97489494_97505749_97505855_97509262_97509326_97513432
transcript_23386.nnic	chr11	-	2896	3	Genic_Genomic	ENSMUSG00000043439.6	novel	2314	1	NA	NA	-1668	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTTTCGAGGTCCTTGC	3273	False	NA	-13	True	AATAAA	-21	NA	97522196	97518214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr11_-_97520885_97521236_97521354_97522087
transcript_23387.nnic	chr11	-	2280	2	Genic_Genomic	ENSMUSG00000043439.6	novel	2314	1	NA	NA	-88	3	multi-exon	FALSE	canonical	3	78	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCGAGGTCCTTGCCTC	4853	False	NA	-10	True	AATAAA	-24	NA	97520616	97518211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr11_-_97518492_97518616
transcript_23388.known	chr11	-	2314	1	FSM	ENSMUSG00000043439.6	ENSMUST00000052281.6	2314	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4957	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTTTCGAGGTCCTTGC	4941	False	NA	-13	True	AATAAA	-21	NA	97520528	97518214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97518200_97520500
transcript_23395.known	chr11	+	546	4	FSM	ENSMUSG00000078695.9	ENSMUST00000107584.8	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	467.239410438232	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2325	False	NA	-1	True	AATAAA	-21	NA	97576651	97579447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97576691_97577008_97577042_97577326_97577447_97579093
transcript_23396.known	chr11	+	737	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_1	75.5	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2452	False	NA	-1	True	AATAAA	-21	NA	97576778	97579447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97577042_97577326_97577447_97579093
transcript_234.known	SIRV8001	+	8001	1	FSM	SIRV8001A	SIRV8001	8001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV8001_+_0_8000
transcript_23400.known	chr11	-	2347	10	FSM	ENSMUSG00000018537.17	ENSMUST00000169807.8	2347	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_9	43.2000800182158	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTGGTTCTTTGGGA	NA	False	NA	-3	True	AATAAA	-17	NA	97590474	97579648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
transcript_23406.known	chr11	+	766	6	FSM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	0	0	0	0	multi-exon	FALSE	canonical	3	3867	junction_2	170.920566345891	4514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	NA	False	NA	22	True	AATAAA	-15	NA	97594224	97604326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
transcript_23412.known	chr11	+	1509	3	FSM	ENSMUSG00000069744.8	ENSMUST00000138265.2	1509	3	0	0	0	0	multi-exon	FALSE	canonical	3	3867	junction_2	98	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAATAAAAACAAG	NA	False	NA	NA	False	NA	NA	NA	97594259	97598890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97594317_97594613_97594799_97597623
transcript_23414.known	chr11	-	5053	10	FSM	ENSMUSG00000018547.9	ENSMUST00000018691.9	5053	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	2.70801280154532	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTATGTGAGTCCTTTG	NA	False	NA	-5	True	AATAAA	-22	NA	97635530	97605982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97609766_97610555_97610660_97611048_97611308_97613187_97613302_97613765_97613805_97615204_97615352_97617530_97617684_97620379_97620477_97623483_97623582_97635271
transcript_23422.known	chr11	-	3105	10	FSM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	12.1969435556112	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTAGAGCGATCTAC	7435	False	NA	-21	True	AATAAA	-19	NA	97657382	97636440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
transcript_23427.nic	chr11	-	688	5	ISM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	-53	8395	-53	2251	5prime_fragment	FALSE	canonical	3	108	junction_1	9.80752262296652	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAGAAGAAGAAGAAGAAGG	7382	False	NA	NA	False	NA	NA	NA	97657435	97644835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
transcript_23428.nic	chr11	-	665	4	ISM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	-53	10536	-53	110	5prime_fragment	FALSE	canonical	3	117	junction_1	8.48528137423857	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTCATGCTCTGAACAC	7382	False	NA	NA	False	AAGAAA	-13	NA	97657435	97646976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_97647047_97648398_97648636_97654034_97654208_97657250
transcript_23429.known	chr11	-	1838	3	FSM	ENSMUSG00000018541.11	ENSMUST00000107579.2	1838	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCCATTA	7451	False	NA	NA	False	NA	NA	NA	97657366	97647086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97648636_97654034_97654208_97657250
transcript_23430.known	chr11	-	624	3	FSM	ENSMUSG00000018543.9	ENSMUST00000107576.2	624	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGTGTGCTCATTCTTT	NA	False	NA	NA	False	TTTAAA	-16	NA	97666744	97662306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97662564_97663541_97663642_97666477
transcript_23432.known	chr11	-	1059	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTGTGAGTGCTTGAGA	NA	False	NA	-9	True	AATAAA	-17	NA	97673263	97668352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
transcript_23435.known	chr11	-	728	5	FSM	ENSMUSG00000071415.7	ENSMUST00000151118.2	728	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	6071.74712809254	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673102	97668863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97672828
transcript_23443.known	chr11	+	3540	7	FSM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_6	89.534754270184	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTAGGCTTCTTCCTCTTTG	4456	False	NA	10	True	AATAAA	-21	NA	97690390	97729590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
transcript_23444.known	chr11	+	686	2	FSM	ENSMUSG00000038366.16	ENSMUST00000107569.3	686	2	0	0	0	0	multi-exon	FALSE	canonical	3	634	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTCTAGACACCTCTT	4563	False	NA	NA	False	NA	NA	NA	97690497	97698145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97690689_97697650
transcript_23445.known	chr11	+	1118	2	FSM	ENSMUSG00000050538.9	ENSMUST00000170806.2	1118	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAGAATGAATGA	5329	False	NA	NA	False	AATAAA	-2	NA	97732144	97733869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97732403_97733009
transcript_23447.known	chr11	+	1859	2	FSM	ENSMUSG00000050538.9	ENSMUST00000164364.2	1859	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACAAACCA	5325	False	NA	NA	False	NA	NA	NA	97732140	97734635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97732374_97733009
transcript_23449.known	chr11	-	2881	14	FSM	ENSMUSG00000017417.15	ENSMUST00000017561.15	2881	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	6.65462423196374	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGTCGCGCCTGCGTGTA	6860	False	NA	-7	True	AATAAA	-17	NA	97877270	97814063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97815434_97816638_97816800_97819259_97819296_97823032_97823166_97824800_97824862_97829355_97829438_97831638_97831735_97844708_97844809_97845576_97845696_97846226_97846350_97846924_97846995_97847248_97847393_97869328_97869508_97877063
transcript_23450.known	chr11	-	2439	14	FSM	ENSMUSG00000017417.15	ENSMUST00000107565.3	2439	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	10.3877488150122	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGTGTGGTGGTGCTCA	6905	False	NA	NA	False	ATTAAA	-13	NA	97877225	97814481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97815434_97816638_97816800_97819259_97819296_97823032_97823166_97824800_97824862_97829355_97829438_97831638_97831735_97844708_97844809_97845576_97845696_97846226_97846350_97846924_97846995_97847248_97847414_97869328_97869508_97877063
transcript_23451.known	chr11	-	619	2	FSM	ENSMUSG00000017417.15	ENSMUST00000107564.2	619	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATAGTTACCCCGAAGC	6874	False	NA	NA	False	NA	NA	NA	97877256	97869081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97869508_97877063
transcript_23454.known	chr11	-	1571	6	FSM	ENSMUSG00000038352.16	ENSMUST00000042971.16	1571	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.57681974534503	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTCACTTCTTATTTTTG	NA	False	NA	3	True	ATTAAA	-26	NA	97887007	97880403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97881166_97883107_97883260_97884250_97884335_97885163_97885312_97885892_97885954_97886643
transcript_23459.known	chr11	-	3396	14	FSM	ENSMUSG00000020882.18	ENSMUST00000017552.13	3396	14	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	30.0140006777902	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTTTTCTTTGTTGTC	NA	False	NA	0	True	TATAAA	-33	NA	97913460	97892333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97894189_97895954_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97901452_97901473_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
transcript_23465.known	chr11	-	1745	13	FSM	ENSMUSG00000020882.18	ENSMUST00000107562.2	1745	13	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	26.3358384884341	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCTGGTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	97913460	97895750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97901452_97901473_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
transcript_23467.known	chr11	-	1880	13	FSM	ENSMUSG00000020882.18	ENSMUST00000092736.11	1880	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_6	26.3832596335041	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCTGGTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	97913460	97895750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902168_97902324_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
transcript_23478.known	chr11	+	737	6	FSM	ENSMUSG00000017404.13	ENSMUST00000092425.11	737	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	6391.5163271324	2003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917535	97921318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97917589_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
transcript_23479.known	chr11	+	751	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	0	0	0	0	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	9220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917749	97921318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
transcript_23492.known	chr11	-	3050	11	FSM	ENSMUSG00000017400.11	ENSMUST00000017544.9	3050	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_9	5.98748695196908	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGCTTGGTGTATC	5359	False	NA	-2	True	ATTAAA	-15	NA	97944288	97927448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97928897_97930444_97930583_97930923_97930976_97931247_97931346_97931964_97932027_97932129_97932203_97932292_97932406_97933354_97933446_97933582_97933681_97934305_97934613_97943718
transcript_23499.known	chr11	-	8601	15	FSM	ENSMUSG00000020883.19	ENSMUST00000103143.10	8601	15	0	0	0	0	multi-exon	TRUE	canonical	3	137	junction_5	8.14567620374923	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTTTCATTTCCCTGT	3165	False	NA	-10	True	ATTAAA	-15	NA	98040438	97973381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040141
transcript_235.known	SIRV8002	+	8000	1	FSM	SIRV8002A	SIRV8002	8000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	188	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV8002_+_0_8000
transcript_23500.nic	chr11	-	2530	15	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	-88	2385	combination_of_known_junctions	FALSE	canonical	3	15	junction_14	36.7548414137095	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTACCATCAGGGGA	2286	False	NA	-18	True	AATAAA	-14	NA	98041317	97979531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040941
transcript_23502.nic	chr11	-	2443	14	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	-47	2385	combination_of_known_junctions	FALSE	canonical	3	12	junction_12	38.3036760328971	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTACCATCAGGGGA	3118	False	NA	-18	True	AATAAA	-14	NA	98040485	97979531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98019140_98019203_98040141
transcript_23507.known	chr11	-	2627	18	FSM	ENSMUSG00000018160.16	ENSMUST00000092735.12	2627	18	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	53.6447367918524	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCTGTGTTTTTTAT	NA	False	NA	NA	False	AATAAA	-42	NA	98084086	98042979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98043790_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_23509.nic	chr11	-	2834	18	NIC	ENSMUSG00000018160.16	novel	2627	18	NA	NA	-12	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_1	56.1624559050546	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCTGTGTTTTTTAT	NA	False	NA	NA	False	AATAAA	-42	NA	98084131	98042979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_98043952_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_23512.nic	chr11	-	2535	18	NIC	ENSMUSG00000018160.16	novel	8024	17	NA	NA	-12	291	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	37.2323667653306	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCAGCTGACCTTATTG	NA	False	NA	-11	True	AATGAA	-12	NA	98084131	98048287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_98048961_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_23514.known	chr11	-	8024	17	FSM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	32.1266414950271	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCCTCTGTGTTTTTTA	NA	False	NA	NA	False	AATAAA	-41	NA	98084119	98042980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_23515.known	chr11	-	5845	17	FSM	ENSMUSG00000018160.16	ENSMUST00000018304.7	5845	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	61.4354017953004	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGATGCCATTCCTAAG	NA	False	NA	NA	False	NA	NA	NA	98083781	98045073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083632
transcript_23521.nic	chr11	-	2167	16	ISM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	-12	8336	-12	-2738	5prime_fragment	FALSE	canonical	3	176	junction_2	32.5798847279865	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCACTGTTGCCTCCAT	NA	False	NA	NA	False	AATAAA	-17	NA	98084131	98051316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_23526.known	chr11	-	1372	10	FSM	ENSMUSG00000018160.16	ENSMUST00000129557.2	1372	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	68.4675285747617	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGGACTTTGCATATTT	NA	False	NA	NA	False	AATAAA	-15	NA	98084102	98060736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98061267_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_23529.known	chr11	+	5143	14	FSM	ENSMUSG00000003119.15	ENSMUST00000107538.2	5143	14	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_13	22.2330315590945	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATTTTGACAAAAGTTAT	NA	False	NA	-1	True	AATAAA	-17	NA	98094160	98141870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98095237_98101186_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140508
transcript_23531.known	chr11	+	2605	8	FSM	ENSMUSG00000003119.15	ENSMUST00000147441.8	2605	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	39.9959181590791	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAGAAAAAGGAAATC	NA	False	NA	NA	False	NA	NA	NA	98132562	98169330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98132656_98134186_98134399_98136042_98136496_98140535_98140927_98154295_98154397_98155019_98155134_98158577_98158685_98168196
transcript_23532.nic	chr11	+	1781	2	ISM	ENSMUSG00000003119.15	ENSMUST00000003203.14	4837	13	-522	36182	-267	-15000	5prime_fragment	FALSE	canonical	3	57	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAAAGAGCAGCAGCTG	NA	False	NA	NA	False	NA	NA	NA	98093617	98101348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_98095237_98101186
transcript_23534.known	chr11	+	2001	7	FSM	ENSMUSG00000061718.13	ENSMUST00000078694.13	2001	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	2.21108319357027	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGAGACTCCTCTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	98239229	98248622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98240001_98241394_98241456_98241710_98241734_98242091_98242168_98246152_98246336_98247650_98247774_98247858
transcript_23537.nnic	chr11	+	2273	16	NNC	ENSMUSG00000018167.11	novel	2170	16	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	47.6538444292681	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGATGGTGCATTCCT	869	False	NA	11	True	AATAAA	-14	NA	98249187	98271938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_98249335_98260724_98260909_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
transcript_23539.known	chr11	+	2070	15	FSM	ENSMUSG00000018167.11	ENSMUST00000018311.5	2070	15	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_11	11.573412528335	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAATGCAGGGTGTG	875	False	NA	-2	True	AATAAA	-1	NA	98249193	98271925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
transcript_23545.nic	chr11	+	3034	14	NIC	ENSMUSG00000018167.11	novel	2070	15	NA	NA	23	0	intron_retention	FALSE	canonical	3	120	junction_11	11.8071285257538	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGATGGTGCATTCCT	898	False	NA	11	True	AATAAA	-14	NA	98249216	98271938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98270893_98271283
transcript_2356.known	chr1	-	2104	6	FSM	ENSMUSG00000026193.16	ENSMUST00000186879.2	2104	6	0	0	0	0	multi-exon	FALSE	canonical	3	1526	junction_1	85.5967289094624	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71692331	71683635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
transcript_23569.known	chr11	+	751	7	FSM	ENSMUSG00000018167.11	ENSMUST00000155063.8	751	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_5	53.2053151062519	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCCAGAATCCTTTGCAG	937	False	NA	NA	False	NA	NA	NA	98249255	98267656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267323_98267434_98267577
transcript_23570.nnic	chr11	-	2153	9	NNC	ENSMUSG00000038208.14	novel	2419	8	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	18.9864260723286	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACTCTGCTACTCTAT	NA	False	NA	NA	False	AATAAA	-21	NA	98291336	98279502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_98279889_98280174_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710_98289809_98291040
transcript_23573.known	chr11	-	2419	8	FSM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	8.7084289452161	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACTCTGCTACTCTAT	NA	False	NA	NA	False	AATAAA	-21	NA	98291316	98279502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710_98289809_98291040
transcript_23574.known	chr11	-	1264	7	FSM	ENSMUSG00000038208.14	ENSMUST00000128897.2	1264	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	21.8225164044439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCACACTAGGTGGCGC	NA	False	NA	NA	False	NA	NA	NA	98291261	98280449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98289710_98289809_98291040
transcript_23577.known	chr11	-	641	2	FSM	ENSMUSG00000038208.14	ENSMUST00000125348.2	641	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAAACCACAAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	98291263	98289390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98289809_98291040
transcript_2358.known	chr1	-	2284	5	FSM	ENSMUSG00000039395.9	ENSMUST00000048860.9	2284	5	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_1	58.0215477215146	1180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTACTGTTTTAATCTC	4222	False	NA	-40	True	AATAAA	-23	NA	72251466	72198600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_72200179_72201480_72201645_72203230_72203322_72231201_72231362_72251175
transcript_23580.known	chr11	+	5012	27	FSM	ENSMUSG00000062312.6	ENSMUST00000058295.6	5012	27	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_8	10.5841234232719	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGTAATTACTCTTTA	9037	False	NA	NA	False	CATAAA	-20	NA	98303295	98328542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98303562_98310914_98311067_98311690_98311908_98312880_98313016_98313349_98313419_98313580_98313697_98313820_98313963_98315565_98315686_98315922_98316050_98317728_98317803_98317885_98317977_98318081_98318282_98318739_98318873_98318961_98319053_98319649_98319811_98322542_98322591_98323736_98323876_98323956_98324080_98324224_98324324_98324717_98324904_98325039_98325196_98325325_98325402_98325627_98325775_98326100_98326199_98326350_98326540_98326754_98327008_98327138
transcript_23584.known	chr11	+	4431	26	FSM	ENSMUSG00000062312.6	ENSMUST00000136032.2	4431	26	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	10.7293988648013	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACTTGCACCCAGACTG	9060	False	NA	-41	True	NA	NA	NA	98303318	98327903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98303562_98310914_98311067_98311690_98311908_98312880_98313016_98313349_98313419_98313580_98313697_98313820_98313963_98315565_98315686_98315922_98316050_98317728_98317803_98317885_98317977_98318081_98318282_98318739_98318873_98318961_98319053_98319649_98319811_98322542_98322591_98323736_98324080_98324224_98324324_98324717_98324904_98325039_98325196_98325325_98325402_98325627_98325775_98326100_98326199_98326350_98326540_98326754_98327008_98327138
transcript_23586.known	chr11	-	747	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_2	62.9567752950829	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTGTGTTTATGTCCA	NA	False	NA	1	True	AATAAA	-26	NA	98329817	98328533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
transcript_23591.known	chr11	+	2397	15	FSM	ENSMUSG00000019312.11	ENSMUST00000019456.5	2397	15	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.18736135624932	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGAGTCCTGTCTGGCA	NA	False	NA	18	True	AATAAA	-18	NA	98337659	98346199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98338076_98341591_98341749_98341853_98342005_98342131_98342289_98342420_98342543_98342667_98342746_98342944_98343095_98344006_98344118_98344320_98344420_98344618_98344700_98344797_98344915_98345046_98345108_98345223_98345312_98345408_98345503_98345684
transcript_23596.known	chr11	-	863	3	FSM	ENSMUSG00000018168.9	ENSMUST00000140876.2	863	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTCTTTGGCAGCATGCT	4958	False	NA	NA	False	AATAAA	-21	NA	98379846	98375092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98375670_98376399_98376517_98379677
transcript_23597.known	chr11	+	1395	8	FSM	ENSMUSG00000017195.16	ENSMUST00000107511.8	1395	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTGAAAGGGCTTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	98441955	98449491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98442058_98442268_98442335_98443283_98443410_98444648_98444811_98445376_98445596_98446312_98446396_98448323_98448505_98449035
transcript_23598.known	chr11	-	2184	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGCTTCCTG	1323	False	NA	1	True	AATAAA	-23	NA	98478194	98472081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
transcript_23599.known	chr11	-	1311	1	FSM	ENSMUSG00000078134.2	ENSMUST00000104933.2	1311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	630	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAGAAAAAAGAAAGGA	NA	False	NA	NA	False	ATTAAA	-32	NA	98516487	98515176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98515200_98516500
transcript_236.known	SIRV8003	+	8000	1	FSM	SIRV8003A	SIRV8003	8000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV8003_+_0_8000
transcript_23600.known	chr11	+	2726	12	FSM	ENSMUSG00000017204.5	ENSMUST00000017348.3	2726	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.46586504514519	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTGTCACCAGTCTTG	4001	False	NA	NA	False	ATTAAA	-41	NA	98555176	98568534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98555265_98556881_98557101_98557276_98557458_98560444_98560611_98561582_98561680_98562143_98562192_98562556_98562584_98563120_98563142_98563801_98563957_98564431_98564547_98566698_98566773_98566999
transcript_23604.known	chr11	+	2148	12	FSM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_3	95.9435956889203	7711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGCACGGTGTCAG	NA	False	NA	16	True	AATAAA	-14	NA	98573379	98586805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
transcript_23605.known	chr11	+	2894	5	FSM	ENSMUSG00000017221.15	ENSMUST00000149489.8	2894	5	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_3	42.2869660770314	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAGAAATGATAAAA	NA	False	NA	NA	False	GATAAA	-8	NA	98573390	98583343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288
transcript_23606.known	chr11	+	2850	8	FSM	ENSMUSG00000017221.15	ENSMUST00000152102.2	2850	8	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_3	80.7161820257644	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAACAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98573416	98585875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581846_98584208_98584324_98584404_98584525_98584630
transcript_23607.known	chr11	-	3133	27	FSM	ENSMUSG00000017210.15	ENSMUST00000100500.9	3133	27	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_20	46.7567196069438	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTCCGTGTGGCCTGCA	NA	False	NA	NA	False	NA	NA	NA	98620236	98595725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608534_98608592_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
transcript_23608.nic	chr11	-	3425	26	NIC	ENSMUSG00000017210.15	novel	3410	26	NA	NA	-8	0	combination_of_known_junctions	TRUE	canonical	1	3	junction_25	38.4503003889436	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	-2	True	AATAAA	-23	NA	98620208	98595416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620129
transcript_23609.known	chr11	-	3410	26	FSM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_19	25.7353919729232	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	-2	True	AATAAA	-23	NA	98620261	98595416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
transcript_23615.nnic	chr11	-	3086	23	NNC	ENSMUSG00000017210.15	novel	3410	26	NA	NA	85	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_22	41.2849651460121	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	-2	True	AATAAA	-23	NA	98609551	98595416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609486
transcript_23624.known	chr11	+	2452	10	FSM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	13.6055544213057	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGCCTCCTCCAGG	6290	False	NA	29	True	NA	NA	NA	98632636	98659832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98632833_98644115_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98658982
transcript_23627.nic	chr11	+	2430	10	NIC	ENSMUSG00000058756.14	novel	2452	10	NA	NA	-95	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	11.7104996677826	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGCCTCCTCCAGG	6195	False	NA	29	True	NA	NA	NA	98632541	98659832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_98632833_98644115_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98659099
transcript_23628.nic	chr11	+	2399	10	NIC	ENSMUSG00000058756.14	novel	1240	9	NA	NA	-98	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	14.8082392814704	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGCCTCCTCCAGG	6539	False	NA	29	True	NA	NA	NA	98632885	98659832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_98633029_98644115_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98658982
transcript_23634.known	chr11	+	2246	9	FSM	ENSMUSG00000058756.14	ENSMUST00000103139.11	2246	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	12.2519131159179	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAACAAAAAAC	6352	False	NA	NA	False	TATAAA	-17	NA	98632698	98655937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98632833_98644115_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103
transcript_23636.nic	chr11	+	2255	9	NIC	ENSMUSG00000058756.14	novel	1240	9	NA	NA	-98	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	13.5410256258527	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAACAAAAAAC	6539	False	NA	NA	False	TATAAA	-17	NA	98632885	98655937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_98633029_98644115_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103
transcript_23640.known	chr11	-	2721	8	FSM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	7.40104791256493	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTTCTGTGATGTGTG	NA	False	NA	0	True	NA	NA	NA	98666159	98658757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98659246_98659874_98660086_98660528_98660715_98661013_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
transcript_23644.known	chr11	+	3741	14	FSM	ENSMUSG00000078676.10	ENSMUST00000169695.2	3741	14	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_12	18.9446406216646	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTGGCCAGTTATTGT	282	False	NA	14	True	AATAAA	-19	NA	98700633	98724632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98700918_98701284_98701313_98701723_98701762_98712256_98712410_98712485_98712638_98713186_98713364_98713545_98714226_98718397_98718463_98719380_98719496_98719685_98719785_98720039_98720255_98722113_98722237_98722368_98722435_98723086
transcript_2365.known	chr1	+	191	1	FSM	ENSMUSG00000118839.1	ENSMUST00000240405.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGGAATAATATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	72265398	72265589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_72265400_72265600
transcript_23650.known	chr11	+	4593	9	FSM	ENSMUSG00000052915.15	ENSMUST00000037915.9	4593	9	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	7.97554857047464	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTTTGCCTCATTTTAT	330	False	NA	31	True	AATAAA	-22	NA	98686341	98698685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98687431_98689965_98690190_98690825_98691209_98693093_98693142_98693607_98693673_98694728_98694797_98695127_98695253_98695672_98695746_98696167
transcript_23651.known	chr11	+	2836	8	FSM	ENSMUSG00000052915.15	ENSMUST00000107487.10	2836	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	17.7924542593603	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	614	False	NA	NA	False	NA	NA	NA	98686625	98697260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98687431_98689965_98690190_98690825_98691209_98693607_98693673_98694728_98694797_98695127_98695253_98695672_98695746_98696167
transcript_23652.known	chr11	+	3963	15	FSM	ENSMUSG00000078676.10	ENSMUST00000017384.14	3963	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	78.6760666873208	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTATTGTGTGTCTTG	5199	False	NA	22	True	AATAAA	-27	NA	98695730	98724640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98695813_98700501_98700918_98701284_98701313_98701723_98701762_98712256_98712410_98712485_98712638_98713186_98713364_98713545_98714226_98718397_98718463_98719380_98719496_98719685_98719785_98720039_98720255_98722113_98722237_98722368_98722435_98723086
transcript_23653.known	chr11	+	2091	3	FSM	ENSMUSG00000052915.15	ENSMUST00000107485.8	2091	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	7.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGACTATCTTGGGATAT	605	False	NA	NA	False	AATAAA	-28	NA	98686616	98691878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98687431_98689965_98690190_98690825
transcript_2366.known	chr1	+	191	1	FSM	ENSMUSG00000119668.1	ENSMUST00000101806.4	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGAATAATATTGGTTA	NA	False	NA	NA	False	NA	NA	NA	72276104	72276295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_72276100_72276300
transcript_23662.known	chr11	+	4614	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	1075	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAAGATGCCTCTGCCAT	17	False	NA	NA	False	AATAAA	-18	NA	98798626	98814762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
transcript_2368.known	chr1	-	1186	8	FSM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_5	66.3254191429636	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323473	72298330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
transcript_23681.known	chr11	+	2380	9	FSM	ENSMUSG00000037992.17	ENSMUST00000107474.8	2380	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	86.2060576467803	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACTGAAGGAATTTGT	8806	False	NA	6	True	NA	NA	NA	98818643	98864988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98818737_98841070_98841622_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
transcript_23682.known	chr11	+	2469	9	FSM	ENSMUSG00000037992.17	ENSMUST00000107475.9	2469	9	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	61.7220331405245	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACTGAAGGAATTTGT	NA	False	NA	6	True	NA	NA	NA	98828523	98864988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98828706_98841070_98841622_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
transcript_23692.known	chr11	+	3238	8	FSM	ENSMUSG00000037992.17	ENSMUST00000107473.3	3238	8	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	54.9043695521437	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTGCCTCTCTGCCT	7438	False	NA	14	True	AATAAA	-19	NA	98851237	98865768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98851960_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
transcript_237.known	chr1	-	840	2	FSM	ENSMUSG00000025902.14	ENSMUST00000191939.2	840	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCCGCGTGGCCATGGAT	NA	False	NA	NA	False	NA	NA	NA	4563958	4562687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_4562892_4563322
transcript_23703.known	chr11	-	5221	36	FSM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	0	0	0	0	multi-exon	FALSE	canonical	3	1094	junction_4	183.786113485769	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTCCTCTTATTTTAAC	NA	False	NA	0	True	AATAAA	-22	NA	98915015	98883768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_2371.nic	chr1	-	1264	6	ISM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	-21	7804	-21	20	5prime_fragment	FALSE	canonical	1	70	junction_3	74.7786065663168	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCCAGAATAAATAAGACAC	NA	False	NA	NA	False	AATGAA	-15	NA	72323494	72306134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
transcript_23719.nic	chr11	-	3952	29	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-51	4913	-51	2091	5prime_fragment	FALSE	canonical	3	1327	junction_20	144.354085639501	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGAGAAGAAGCAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	98915066	98888681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_23721.nic	chr11	-	3871	28	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-51	6236	-51	768	5prime_fragment	FALSE	canonical	3	1327	junction_19	144.861316773643	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAGGAAGAAAATTAAGGTA	NA	False	NA	NA	False	AAGAAA	-2	NA	98915066	98890004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_23728.nic	chr11	-	3461	25	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-51	8405	-51	-1401	5prime_fragment	FALSE	canonical	3	1327	junction_16	148.202470364776	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTCCTTAGCCACTTGCT	NA	False	NA	NA	False	NA	NA	NA	98915066	98892173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_23737.nic	chr11	-	3367	24	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-51	9931	-51	751	5prime_fragment	FALSE	canonical	3	1327	junction_15	151.311843892272	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATGTAAAGATCTACTAAA	NA	False	NA	NA	False	AATAGA	-18	NA	98915066	98893699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_23740.nic	chr11	-	3273	24	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-51	10025	-51	657	5prime_fragment	FALSE	canonical	3	1327	junction_15	151.311843892272	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGCTTCTAGGAATGCT	NA	False	NA	NA	False	AAGAAA	-2	NA	98915066	98893793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_2376.known	chr1	+	2549	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGTGTGAAGTCTCA	322	False	NA	22	True	TATAAA	-28	NA	72346585	72434111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
transcript_23762.nic	chr11	-	1733	13	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-51	17595	-51	6055	5prime_fragment	FALSE	canonical	3	1327	junction_4	87.8747530421692	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATGAAGATGAAGATTCAT	NA	False	NA	NA	False	AAGAAA	-3	NA	98915066	98901363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_23763.nic	chr11	-	1474	11	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-51	19117	-51	4533	5prime_fragment	FALSE	canonical	3	1327	junction_2	95.3951780752046	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGGGAATCCCCAAACTT	NA	False	NA	NA	False	AAAACA	-9	NA	98915066	98902885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_23765.nic	chr11	-	1310	10	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-51	21536	-51	2114	5prime_fragment	FALSE	canonical	3	1327	junction_1	96.5874515787073	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGACTTTACAAGCCAAGA	NA	False	NA	NA	False	AAGAAA	-2	NA	98915066	98905304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_23766.nic	chr11	-	1199	9	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-51	21782	-51	1868	5prime_fragment	FALSE	canonical	3	1379	junction_5	78.5285577035514	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAACAAGGGCGGGGTTG	NA	False	NA	NA	False	NA	NA	NA	98915066	98905550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_23774.known	chr11	-	632	3	FSM	ENSMUSG00000020914.18	ENSMUST00000129777.2	632	3	0	0	0	0	multi-exon	FALSE	canonical	3	1518	junction_2	50	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGTCCAATAAAGTCCAG	NA	False	NA	NA	False	AAAAAG	-6	NA	98915004	98912910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_98913257_98913665_98913819_98914871
transcript_23778.known	chr11	+	3831	4	FSM	ENSMUSG00000017493.13	ENSMUST00000017637.13	3831	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	1.69967317119759	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCAGATTTTATTT	4229	False	NA	NA	False	NA	NA	NA	98932069	98945218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_98932672_98939051_98939198_98939919_98940055_98942270
transcript_23783.known	chr11	-	2919	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	0	0	0	0	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCAGTGTTTTTATTGC	NA	False	NA	-2	True	AATAAA	-15	NA	99121843	99099872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
transcript_23797.nic	chr11	-	1869	10	NIC	ENSMUSG00000037935.17	novel	2919	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	198.840962568234	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTCTGTGTATTAA	NA	False	NA	-1	True	AATGAA	-36	NA	99121843	99100817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99119100_99119145_99119322_99119375_99121227
transcript_23807.nic	chr11	-	1033	6	ISM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	-17	10582	-17	0	5prime_fragment	FALSE	canonical	3	612	junction_5	35.2397502828837	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGAAGCAGAAAAGGTAGGA	NA	False	NA	NA	False	TTTAAA	-6	NA	99121860	99110454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
transcript_23809.known	chr11	-	2094	8	FSM	ENSMUSG00000019761.11	ENSMUST00000103131.5	2094	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	28.6940227011744	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTCAGAATTATTATTTA	5072	False	NA	NA	False	AATAAA	-38	NA	99280190	99276079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_99276463_99276756_99277096_99277356_99277575_99277823_99277950_99278055_99278218_99278323_99278481_99278835_99278919_99279564
transcript_23810.known	chr11	-	1654	8	FSM	ENSMUSG00000044041.5	ENSMUST00000007275.3	1654	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.494871659305394	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTGTTTCTGGCCTGG	3818	False	NA	NA	False	AATAAA	-21	NA	100012392	100008152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100008493_100008808_100008832_100009558_100009780_100009869_100009996_100010106_100010269_100010447_100010605_100010798_100010882_100011850
transcript_23812.known	chr11	-	1576	6	FSM	ENSMUSG00000020911.15	ENSMUST00000007317.8	1576	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	2.56124969497314	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATACCTTGCTTATTTCAG	9599	False	NA	NA	False	AATAAA	-21	NA	100036946	100031635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100036256
transcript_23813.nnic	chr11	-	989	6	Fusion	ENSMUSG00000035557.10_ENSMUSG00000020911.15_ENSMUSG00000045545.9	novel	1576	6	NA	NA	291	-5	multi-exon	FALSE	canonical	0	0	junction_3	5.53534100123922	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCAGCGAGACTCCCCTG	NA	False	NA	NA	False	NA	NA	NA	100151564	100031737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr11_-_100031994_100032105_100032232_100032348_100032511_100095773_100095931_100096446_100096530_100151359
transcript_23815.known	chr11	-	1551	8	FSM	ENSMUSG00000035557.10	ENSMUST00000080893.7	1551	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	2.1946130708196	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGGACTGGTGTGTGTG	NA	False	NA	48	True	AATAAA	-16	NA	100151855	100147042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100147323_100148145_100148172_100148258_100148480_100148568_100148695_100149234_100149397_100149998_100150156_100150520_100150604_100151359
transcript_23819.known	chr11	-	1062	5	FSM	ENSMUSG00000053654.8	ENSMUST00000107406.2	1062	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	11.3688170009021	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCATCATTTGTCCTGT	NA	False	NA	-6	True	AATAAA	-23	NA	100156804	100153707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425
transcript_2382.nic	chr1	+	2282	20	ISM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	-23	1030	-23	-1030	5prime_fragment	FALSE	canonical	3	464	junction_5	73.7158578653944	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATACAACGGGACCTGA	299	False	NA	NA	False	NA	NA	NA	72346562	72433081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054
transcript_23820.known	chr11	-	1542	8	FSM	ENSMUSG00000053654.8	ENSMUST00000017270.8	1542	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	18.9510648023497	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100160697	100153712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235
transcript_23821.known	chr11	+	1322	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	0	0	0	0	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATGTCCAGATTGCAC	3957	False	NA	21	True	AATAAA	-17	NA	100210710	100212922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
transcript_23827.known	chr11	+	447	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	0	0	0	0	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTTTTAAGTGCTTGT	4590	False	NA	NA	False	NA	NA	NA	100211343	100212175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100211656_100211773_100211876_100212142
transcript_23831.known	chr11	+	924	2	FSM	ENSMUSG00000035530.14	ENSMUST00000152521.2	924	2	0	0	0	0	multi-exon	FALSE	canonical	3	12221	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTATGTCACTAGAGGGA	4780	False	NA	NA	False	NA	NA	NA	100211533	100212575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100211656_100211773
transcript_23837.known	chr11	-	3316	12	FSM	ENSMUSG00000006930.16	ENSMUST00000138603.9	3316	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	156.163931667075	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	2007	False	NA	-2	True	AATAAA	-17	NA	100246954	100238152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100239686_100240062_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
transcript_23838.known	chr11	-	2120	11	FSM	ENSMUSG00000006930.16	ENSMUST00000103124.11	2120	11	0	0	0	0	multi-exon	FALSE	canonical	3	486	junction_1	44.9070150421958	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCAACCCCGCAGCAGC	2048	False	NA	NA	False	NA	NA	NA	100246913	100239684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
transcript_23841.nic	chr11	-	3382	14	NIC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_13	142.103221088711	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100277612	100261444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100277321
transcript_23851.known	chr11	-	3205	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288575	100261444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
transcript_23862.known	chr11	-	2386	13	FSM	ENSMUSG00000001552.15	ENSMUST00000107403.2	2386	13	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_12	143.1885897068	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCCCCTTCCCCACTC	NA	False	NA	NA	False	NA	NA	NA	100288575	100263121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277212_100288446
transcript_23863.known	chr11	-	2178	8	FSM	ENSMUSG00000006931.16	ENSMUST00000066489.13	2178	8	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	9.9979589753844	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCCAGTCTGCAAGGTGG	NA	False	NA	NA	False	AATAAA	-31	NA	100305662	100299281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100299971_100300188_100300334_100301939_100302024_100302554_100302701_100303526_100303656_100304434_100304607_100304752_100304906_100305002
transcript_23871.known	chr11	+	2584	10	FSM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	6.35959467611297	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCAGAAGTGGACAGA	NA	False	NA	13	True	AATAAA	-14	NA	100306522	100315650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100306852_100311225_100311372_100311716_100311907_100312019_100312166_100312469_100312660_100312769_100312916_100313451_100313645_100313910_100314054_100314261_100314426_100314713
transcript_23877.known	chr11	-	1399	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_8	92.107868149252	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	False	NA	-2	True	ATTAAA	-19	NA	100331915	100320178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
transcript_23882.known	chr11	-	1344	8	FSM	ENSMUSG00000017176.18	ENSMUST00000092689.9	1344	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	183.081112836772	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGCACGCGTCTTTAAT	NA	False	NA	-5	True	ATTAAA	-16	NA	100331846	100320181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
transcript_23891.known	chr11	-	1348	8	FSM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_1	42.2470866040561	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTGGATGCACGCGTCTTT	NA	False	NA	-8	True	ATTAAA	-13	NA	100331754	100320184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
transcript_23892.known	chr11	-	598	4	FSM	ENSMUSG00000017176.18	ENSMUST00000130666.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	238.736023441978	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGGTTTATTTTTATTA	NA	False	NA	NA	False	AGTAAA	-17	NA	100331753	100330378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100330761_100330865_100330913_100331010_100331081_100331654
transcript_23894.nnic	chr11	+	1328	4	NNC	ENSMUSG00000001558.6	novel	2017	5	NA	NA	-810	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	6.59966329107444	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAGAGTACTGGAAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	100331932	100347848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_100332042_100337946_100338565_100347109_100347260_100347397
transcript_23896.known	chr11	-	2393	2	FSM	ENSMUSG00000048732.6	ENSMUST00000056665.4	2393	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTCTAGTTACTTGGCC	7694	False	NA	-8	True	ATTAAA	-16	NA	100363567	100353439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100355272_100363006
transcript_239.known	chr1	-	1470	1	FSM	ENSMUSG00000098104.2	ENSMUST00000182774.2	1470	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAGCTGTGCAGATGTCG	NA	False	NA	NA	False	AATAAA	-42	NA	4759626	4758156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_4758200_4759600
transcript_23907.known	chr11	-	4426	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	0	0	0	0	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	1856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	-14	True	AATAAA	-18	NA	100418826	100367178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
transcript_23929.known	chr11	-	4393	28	FSM	ENSMUSG00000020917.18	ENSMUST00000007131.16	4393	28	0	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_15	363.337822300204	2603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	-17	True	AATAAA	-15	NA	100418826	100367181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
transcript_2396.nic	chr1	+	1851	15	ISM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	-23	40675	-23	-40675	5prime_fragment	FALSE	canonical	3	464	junction_5	68.318768150726	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAGAAAGAAGAAGATCAC	299	False	NA	NA	False	TATAAA	-2	NA	72346562	72393436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401
transcript_23992.known	chr11	+	2240	12	FSM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	9.12538915733062	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGAGTGACACTGTGC	NA	False	NA	NA	False	ATTAAA	-22	NA	100436432	100462789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100436735_100440628_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
transcript_23993.nic	chr11	+	2264	11	ISM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	3870	0	-70	0	3prime_fragment	FALSE	canonical	3	16	junction_2	6.19354502688081	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGAGTGACACTGTGC	NA	False	NA	NA	False	ATTAAA	-22	NA	100440302	100462789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
transcript_23998.known	chr11	-	1900	15	FSM	ENSMUSG00000014195.17	ENSMUST00000239410.2	1900	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_14	710.897567896259	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACCATGAGTGTGGACA	5362	False	NA	NA	False	AATGAA	-41	NA	100511014	100473880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353_100510639_100510851
transcript_24.known	ERCC-00071	+	626	1	FSM	ERCC-00071A	DQ883654	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00071_+_0_600
transcript_24004.nic	chr11	+	2021	5	NIC	ENSMUSG00000017837.13	novel	988	6	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_3	123.71413621733	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513685	100518433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_100513835_100515017_100515126_100515768_100515843_100515934_100516011_100516819
transcript_24007.known	chr11	+	2357	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	8.2192186706253	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCTATCACTCTTG	NA	False	NA	19	True	AATAAA	-15	NA	100465729	100472554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
transcript_24010.known	chr11	+	2097	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_1	10.0332779621949	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513701	100518433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
transcript_24011.known	chr11	+	671	4	FSM	ENSMUSG00000017837.13	ENSMUST00000142993.2	671	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	160.70054967755	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTCCCTCCTAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	100513836	100516943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100514034_100515017_100515126_100515768_100516011_100516819
transcript_24013.known	chr11	-	1049	5	FSM	ENSMUSG00000014195.17	ENSMUST00000154972.9	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	1222.31570696772	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCTCCTTTTGTTTTG	5930	False	NA	NA	False	NA	NA	NA	100510446	100488252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100488881_100489440_100489555_100490010_100490136_100492553_100492643_100510353
transcript_24014.known	chr11	-	1771	14	FSM	ENSMUSG00000014195.17	ENSMUST00000239499.2	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_11	720.895014063612	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5919	False	NA	-21	True	AATAAA	-15	NA	100510457	100473643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490032_100490136_100492553_100492643_100510353
transcript_24019.known	chr11	-	2946	18	FSM	ENSMUSG00000020918.15	ENSMUST00000153526.8	2946	18	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_12	124.621058832359	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	7071	False	NA	-1	True	AATAAA	-18	NA	100602999	100595571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599809_100599901_100600004_100600208_100600316_100601075_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
transcript_24021.known	chr11	-	3046	18	FSM	ENSMUSG00000020918.15	ENSMUST00000103118.4	3046	18	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_10	104.829867108865	1345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	6779	False	NA	-1	True	AATAAA	-18	NA	100603291	100595571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
transcript_24041.known	chr11	-	3269	16	FSM	ENSMUSG00000020918.15	ENSMUST00000126299.2	3269	16	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_8	109.540170206591	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	6795	False	NA	-1	True	AATAAA	-18	NA	100603275	100595571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
transcript_24051.known	chr11	-	1915	6	FSM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_2	14.961283367412	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAAGATTGTTGGTGTCT	NA	False	NA	-10	True	ATTAAA	-17	NA	100629041	100605834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
transcript_24052.known	chr11	-	1967	6	FSM	ENSMUSG00000019173.12	ENSMUST00000019317.12	1967	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	59.308009577122	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGAAGATTGTTGGTGT	NA	False	NA	-12	True	ATTAAA	-15	NA	100629041	100605836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100606989_100607583_100607732_100608667_100608791_100609256_100609409_100610740_100610995_100628903
transcript_24062.nic	chr11	-	2693	5	NIC	ENSMUSG00000019173.12	novel	1967	6	NA	NA	-48	-258	intron_retention	FALSE	canonical	3	135	junction_4	8.66025403784439	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACGCTTGTCTTCCTCGTC	NA	False	NA	-4	True	AATATA	-20	NA	100629089	100606094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_100606989_100607583_100608791_100609256_100609409_100610740_100610995_100628903
transcript_24064.known	chr11	-	3748	17	FSM	ENSMUSG00000035355.16	ENSMUST00000107361.9	3748	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.845484328654293	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGACTCTGTCTGTTTCT	164	False	NA	NA	False	AATAAA	-19	NA	100650566	100631201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100631448_100632118_100632825_100634949_100635027_100636061_100636169_100636440_100636794_100636990_100637030_100637570_100637816_100638388_100638639_100640434_100640635_100641057_100641253_100643070_100643279_100645959_100646118_100646495_100646740_100647685_100647814_100647904_100648052_100648392_100648627_100650355
transcript_24067.known	chr11	-	3948	17	FSM	ENSMUSG00000035355.16	ENSMUST00000107363.3	3948	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.845484328654293	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGACCTTGACTCTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	100650768	100631207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100631448_100632114_100632825_100634949_100635027_100636061_100636169_100636440_100636794_100636990_100637030_100637570_100637816_100638388_100638639_100640434_100640635_100641057_100641253_100643070_100643279_100645959_100646118_100646495_100646740_100647685_100647814_100647904_100648052_100648392_100648627_100650355
transcript_24069.known	chr11	-	2462	9	FSM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_7	5.82961190818051	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGTATGTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	100661783	100656857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
transcript_24079.known	chr11	-	5062	19	FSM	ENSMUSG00000020919.12	ENSMUST00000004143.3	5062	19	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_6	7.16386680880661	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGAGTCCTGTTTCCTTT	NA	False	NA	0	True	AATAAA	-21	NA	100741550	100671556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100674049_100674497_100674603_100675078_100675131_100678034_100678206_100679194_100679326_100679492_100679588_100681572_100681780_100685369_100685463_100687244_100687368_100687443_100687532_100687889_100688070_100688471_100688628_100689059_100689212_100689416_100689548_100692232_100692408_100693264_100693355_100695695_100695853_100699221_100699360_100741224
transcript_2408.known	chr1	+	3059	17	FSM	ENSMUSG00000039354.17	ENSMUST00000047615.15	3059	17	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_6	11.1563813017483	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	False	NA	9	True	AATAAA	-16	NA	72622409	72672293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_72622598_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
transcript_24086.known	chr11	-	6042	24	FSM	ENSMUSG00000004040.17	ENSMUST00000103114.8	6042	24	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	102.13864331127	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAATATAAAAAGCATCC	NA	False	NA	NA	False	CATAAA	-16	NA	100830230	100775923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100779587_100780303_100780367_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
transcript_24088.known	chr11	-	2927	24	FSM	ENSMUSG00000004040.17	ENSMUST00000092671.12	2927	24	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	102.661666503989	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATAAGAA	NA	False	NA	NA	False	TTTAAA	-3	NA	100830206	100779061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100779587_100780303_100780417_100780711_100780755_100783902_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
transcript_24108.known	chr11	+	3888	20	FSM	ENSMUSG00000004043.15	ENSMUST00000004145.14	3888	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.1907734967373	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTCTGCTTCCTGGTTTA	NA	False	NA	14	True	AATAAA	-31	NA	100750176	100775995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100750407_100751309_100751403_100752153_100752292_100752546_100752704_100753956_100754047_100756156_100756332_100764828_100764960_100765164_100765317_100765748_100765905_100766308_100766489_100767602_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772563_100772616_100772887_100772993_100774659
transcript_24109.nic	chr11	+	3951	19	ISM	ENSMUSG00000004043.15	ENSMUST00000107356.8	3738	20	534	1	-155	0	3prime_fragment	FALSE	canonical	3	9	junction_8	10.9994388184574	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTCTGCTTCCTGGTTT	NA	False	NA	13	True	AATAAA	-30	NA	100751015	100775994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_100751403_100752153_100752292_100752546_100752704_100753956_100754047_100756156_100756332_100764828_100764960_100765164_100765317_100765748_100765905_100766308_100766489_100767602_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772563_100772616_100772887_100772993_100774659
transcript_24117.nic	chr11	-	2060	17	ISM	ENSMUSG00000004040.17	ENSMUST00000092671.12	2927	24	-99	6252	0	0	5prime_fragment	FALSE	canonical	3	434	junction_9	49.3159060927608	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGGC	NA	False	NA	NA	False	TTTAAA	-42	NA	100830305	100785313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
transcript_24136.known	chr11	+	3605	18	FSM	ENSMUSG00000004043.15	ENSMUST00000107357.4	3605	18	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_16	10.1053276571729	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTCTGCTTCCTGGTTT	NA	False	NA	13	True	AATAAA	-30	NA	100751309	100775994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100751403_100752153_100752292_100752546_100752704_100753956_100754047_100756156_100756332_100764828_100764960_100765164_100765317_100765748_100765905_100766308_100766489_100767602_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772887_100772993_100774659
transcript_24137.known	chr11	-	3491	2	FSM	ENSMUSG00000004044.10	ENSMUST00000060792.6	3491	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGAGGTTATATTGT	NA	False	NA	1	True	AATAAA	-19	NA	100861713	100847558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100850152_100860815
transcript_24138.known	chr11	-	658	2	FSM	ENSMUSG00000004044.10	ENSMUST00000132934.2	658	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCAGTGTCTGACCGCCC	NA	False	NA	NA	False	NA	NA	NA	100861377	100855232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100855329_100860815
transcript_2414.nnic	chr1	+	2990	17	NNC	ENSMUSG00000039354.17	novel	3059	17	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	26.105480147854	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	False	NA	9	True	AATAAA	-16	NA	72622401	72672293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_72622598_72624873_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
transcript_24141.nic	chr11	+	3997	22	NIC	ENSMUSG00000019302.17	novel	4008	22	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_5	56.386100151096	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	17	True	AATAAA	-22	NA	100900309	100954545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917485_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100940284_100940303_100945851_100945970_100946259_100946432_100953137
transcript_24143.known	chr11	+	4008	22	FSM	ENSMUSG00000019302.17	ENSMUST00000044721.13	4008	22	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_19	48.1567734584863	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	17	True	AATAAA	-22	NA	100900277	100954545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100940284_100940303_100945851_100945970_100946259_100946432_100953137
transcript_24146.known	chr11	+	2716	21	FSM	ENSMUSG00000019302.17	ENSMUST00000103110.10	2716	21	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	41.6171839508634	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGAGCAGCTCCCCTGCC	NA	False	NA	NA	False	NA	NA	NA	100900277	100953250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917485_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945851_100945970_100946259_100946432_100953137
transcript_24148.nnic	chr11	+	3917	20	NIC	ENSMUSG00000019302.17	novel	4008	22	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_17	45.3592615005813	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	17	True	AATAAA	-22	NA	100900242	100954545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100945851_100945970_100946259_100946432_100953137
transcript_2415.known	chr1	+	2994	17	FSM	ENSMUSG00000039354.17	ENSMUST00000152225.2	2994	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	25.2319706671913	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	False	NA	9	True	AATAAA	-16	NA	72622773	72672293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_72622897_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
transcript_24150.nic	chr11	+	2422	17	ISM	ENSMUSG00000019302.17	ENSMUST00000044721.13	4008	22	-35	18893	-35	0	5prime_fragment	FALSE	canonical	3	143	junction_12	25.0571222409917	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGGTCGTGATTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	100900242	100935652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341
transcript_24152.known	chr11	+	3813	20	FSM	ENSMUSG00000019302.17	ENSMUST00000092663.4	3813	20	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_17	24.3376525088162	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	17	True	AATAAA	-22	NA	100902646	100954545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945851_100945970_100946259_100946432_100953137
transcript_24153.known	chr11	+	2560	6	FSM	ENSMUSG00000001751.10	ENSMUST00000001802.10	2560	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1.93907194296653	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGGACGTTGCTGGCAT	NA	False	NA	23	True	AATAAA	-33	NA	100960837	100968498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100961328_100961905_100962054_100962721_100962869_100963042_100963129_100964672_100964930_100967066
transcript_24157.nic	chr11	+	1409	2	NIC	ENSMUSG00000019301.6	novel	1339	6	NA	NA	609	0	intron_retention	FALSE	canonical	3	24	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTGGAGGGGGACACAT	NA	False	NA	NA	False	NA	NA	NA	100969845	100971353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_100970661_100970759
transcript_24158.known	chr11	+	2138	10	FSM	ENSMUSG00000001755.13	ENSMUST00000001806.10	2138	10	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	26.2908705931015	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3511	False	NA	25	True	ATTAAA	-16	NA	100973390	100977445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
transcript_24162.known	chr11	+	2386	9	FSM	ENSMUSG00000001755.13	ENSMUST00000107308.4	2386	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	20.9388992069784	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3571	False	NA	25	True	ATTAAA	-16	NA	100973450	100977445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
transcript_24163.nic	chr11	+	1414	9	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	48.4418143239908	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3527	False	NA	25	True	ATTAAA	-16	NA	100973406	100977445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_100973517_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
transcript_24170.known	chr11	+	1826	8	FSM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.1912097446562	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8223	False	NA	18	True	AATAAA	-22	NA	100978102	100983033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_24172.known	chr11	+	1965	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	39.4052726193346	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8246	False	NA	18	True	AATAAA	-22	NA	100978125	100983033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_24174.known	chr11	-	1291	8	FSM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_7	41.1021624139417	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCTTTGCCTTTGGGA	NA	False	NA	NA	False	GATAAA	-14	NA	100986262	100982648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
transcript_24180.known	chr11	+	1736	7	FSM	ENSMUSG00000017801.16	ENSMUST00000107303.10	1736	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	122.609701446863	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8223	False	NA	18	True	AATAAA	-22	NA	100978102	100983033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_100978194_100978579_100978617_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_24187.known	chr11	-	1030	7	FSM	ENSMUSG00000019303.15	ENSMUST00000126386.8	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	24.7571538482651	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCAGATATCAAACCTGG	NA	False	NA	4	True	TATAAA	-30	NA	100986226	100982957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983
transcript_24189.known	chr11	-	3165	9	FSM	ENSMUSG00000017802.15	ENSMUST00000017946.6	3165	9	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	11.6162601554889	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTTCGTTGTGTACT	9795	False	NA	1	True	AATAAA	-29	NA	101010719	100987338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100993708_100993836_100994715_100994747_100997132_100997240_101010366
transcript_2419.known	chr1	+	558	4	FSM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	0	0	0	multi-exon	FALSE	canonical	2	9164	junction_1	3956.18005993998	1000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTACATAGCTTGGTTT	NA	False	NA	19	True	AATAAA	-17	NA	72750448	72752972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_72750483_72750830_72750960_72751300_72751384_72752660
transcript_24191.known	chr11	-	3229	8	FSM	ENSMUSG00000017802.15	ENSMUST00000154513.8	3229	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	32.1222155944119	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTCAATTGTTATTTTT	9795	False	NA	NA	False	CATAAA	-22	NA	101010719	100987147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100994715_100994747_100997132_100997240_101010366
transcript_24193.known	chr11	-	835	7	FSM	ENSMUSG00000017802.15	ENSMUST00000147201.2	835	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	41.0270913205192	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACCTGCCAGACTTCCC	9795	False	NA	NA	False	NA	NA	NA	101010719	100989408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_100989447_100990498_100990582_100991747_100991886_100992831_100992917_100994715_100994747_100997132_100997240_101010366
transcript_24194.nnic	chr11	+	1746	11	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	165	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	211.726450874708	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1395	False	NA	16	True	AATAAA	-19	NA	101010928	101017245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_101011069_101011372_101011486_101011656_101011825_101013389_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
transcript_24195.known	chr11	+	1802	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	0	0	0	0	multi-exon	TRUE	canonical	3	373	junction_8	104.461715475096	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1230	False	NA	16	True	AATAAA	-19	NA	101010763	101017245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
transcript_24206.known	chr11	+	1754	11	FSM	ENSMUSG00000045007.10	ENSMUST00000043654.10	1754	11	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_5	90.3044295702044	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCTTTGTTTGTGACT	1651	False	NA	NA	False	AATAAA	-22	NA	101046732	101052613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101046995_101047273_101047387_101047578_101047747_101048277_101048347_101048608_101048689_101049834_101049962_101050882_101050970_101051072_101051223_101051619_101051773_101051852_101052015_101052230
transcript_24210.known	chr11	-	3056	13	FSM	ENSMUSG00000035172.16	ENSMUST00000043397.14	3056	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	15.6142740963375	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCCTGTGGGAGTGTTG	691	False	NA	3	True	AAGAAA	-22	NA	101062177	101053504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101053891_101054331_101054524_101054838_101055298_101055484_101055618_101055876_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
transcript_24212.known	chr11	-	3010	13	FSM	ENSMUSG00000035172.16	ENSMUST00000164474.8	3010	13	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	14.3843568581366	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTTCCTGTGGGAGTG	725	False	NA	0	True	AAGAAA	-19	NA	101062143	101053507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101053891_101054331_101054524_101054838_101055298_101055484_101055618_101055885_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
transcript_24213.known	chr11	-	2635	13	FSM	ENSMUSG00000035172.16	ENSMUST00000129895.8	2635	13	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	20.3856907876306	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCCTGTGGGAGTGTTG	1087	False	NA	3	True	AAGAAA	-22	NA	101061781	101053504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101053891_101054331_101054524_101054863_101055298_101055484_101055618_101055876_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
transcript_24214.nic	chr11	-	3087	13	NIC	ENSMUSG00000035172.16	novel	2635	13	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	19.5867018379534	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCCTGTGGGAGTGTTG	626	False	NA	3	True	AAGAAA	-22	NA	101062242	101053504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_101053891_101054331_101054524_101054863_101055298_101055484_101055618_101055885_101056014_101056309_101056518_101057179_101057487_101058275_101058397_101058500_101058659_101058743_101058936_101059040_101059121_101059467_101059524_101061550
transcript_24222.known	chr11	-	4193	21	FSM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_20	14.6399282785128	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGCAAGTTGTGTCCT	2618	False	NA	-8	True	AATAAA	-14	NA	101117276	101081941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
transcript_2423.known	chr1	+	665	3	FSM	ENSMUSG00000046330.11	ENSMUST00000212432.2	665	3	0	0	0	0	multi-exon	FALSE	canonical	2	15690	junction_1	1470.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACGGGTTATTTACG	NA	False	NA	-23	True	NA	NA	NA	72750472	72752755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_72750960_72751300_72751384_72752660
transcript_24230.known	chr11	-	3636	15	FSM	ENSMUSG00000006920.15	ENSMUST00000100417.3	3636	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_13	38.227634517667	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAGCTGCAGTTTAT	2642	False	NA	NA	False	GATAAA	-21	NA	101117252	101088214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108195_101109479_101109547_101117221
transcript_24234.nic	chr11	-	1640	13	ISM	ENSMUSG00000006920.15	ENSMUST00000107284.8	4207	21	-13	9726	-13	-1538	5prime_fragment	FALSE	canonical	3	124	junction_12	16.3783393541592	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGGCAAGGATTAGACAA	2592	False	NA	NA	False	AAGAAA	-7	NA	101117302	101091666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
transcript_24241.known	chr11	+	876	6	FSM	ENSMUSG00000078656.12	ENSMUST00000107280.11	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	474.329252734849	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACCCACCTACATGCGCC	NA	False	NA	NA	False	TATAAA	-35	NA	101144560	101150149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101144634_101144856_101145003_101145744_101145823_101146834_101146924_101147703_101147780_101149735
transcript_24242.known	chr11	+	615	6	FSM	ENSMUSG00000078656.12	ENSMUST00000007533.15	615	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	475.771541813926	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTGTGACTCTTTA	NA	False	NA	1	True	AGTAAA	-17	NA	101144532	101148875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148726
transcript_24243.known	chr11	+	1220	6	FSM	ENSMUSG00000078656.12	ENSMUST00000100414.12	1220	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	486.921595331322	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGGCCTGTTACTACT	NA	False	NA	16	True	ATTAAA	-13	NA	101144554	101150371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149595
transcript_24244.known	chr11	+	1106	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	0	0	0	0	multi-exon	FALSE	canonical	3	1136	junction_3	45.4682306671372	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCTGTTACTACTGCTG	NA	False	NA	20	True	ATTAAA	-17	NA	101144532	101150375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
transcript_24245.known	chr11	+	361	5	FSM	ENSMUSG00000078656.12	ENSMUST00000144306.9	361	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	527.253733983933	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTGGACGAGGCGACCC	NA	False	NA	NA	False	NA	NA	NA	101144555	101149742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101147703_101147780_101149735
transcript_24246.known	chr11	+	1178	4	FSM	ENSMUSG00000001240.14	ENSMUST00000129680.8	1178	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	6.16441400296898	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCCTTCCTAGTGGGGT	NA	False	NA	17	True	AATAAA	-18	NA	101136853	101139076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101137399_101137880_101137971_101138411_101138515_101138636
transcript_24247.nnic	chr11	-	2012	12	NNC	ENSMUSG00000035086.14	novel	4365	12	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_8	132.301621336492	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193115	101179087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186405_101187083_101187143_101189834_101189903_101192553_101192683_101192957
transcript_24248.known	chr11	-	2123	12	FSM	ENSMUSG00000035086.14	ENSMUST00000041403.12	2123	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	185.08889979263	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193112	101179087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185791_101185991_101186120_101186258_101186359_101186451_101187019_101187143_101189834_101189903_101192553_101192683_101192957
transcript_24249.known	chr11	-	4365	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTCCAATTTTCTAGT	NA	False	NA	NA	False	AATAAA	-17	NA	101193112	101176777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
transcript_24256.known	chr11	-	2662	11	FSM	ENSMUSG00000035086.14	ENSMUST00000122817.8	2662	11	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	42.6812605249658	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
transcript_24267.known	chr11	-	3476	10	FSM	ENSMUSG00000035086.14	ENSMUST00000139997.9	3476	10	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_6	43.6603048800878	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193078	101179087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
transcript_24269.known	chr11	+	2335	7	FSM	ENSMUSG00000078653.5	ENSMUST00000103107.5	2335	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_6	3.09120616516523	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTATTGTAAACATG	NA	False	NA	9	True	AATAAA	-14	NA	101169921	101179527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101170307_101174217_101174294_101174546_101174719_101175585_101175749_101176490_101176636_101177679_101177777_101178230
transcript_24273.known	chr11	-	725	4	FSM	ENSMUSG00000035086.14	ENSMUST00000170502.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_1	27.6445694888204	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCTTCCTTTTTGCTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	101193075	101186732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101187143_101189834_101189903_101192553_101192683_101192957
transcript_24275.known	chr11	-	886	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_1	0	611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCTAGTGTGTGGGGG	5502	False	NA	-5	True	AATAAA	-20	NA	101169940	101168793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101169279_101169539
transcript_24278.nic	chr11	+	3001	12	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	-262	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	514.270726529606	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101206776	101214363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_101207315_101207846_101207922_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
transcript_24282.known	chr11	+	2664	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	0	0	0	0	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	1251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207038	101214363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
transcript_24292.nnic	chr11	+	2570	10	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_3	427.085471539363	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207027	101214363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_101207315_101208006_101208040_101208154_101208218_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
transcript_24302.known	chr11	-	1516	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTATACTGCCATT	NA	False	NA	-21	True	AGTAAA	-16	NA	101308441	101297664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
transcript_24312.nic	chr11	-	818	7	ISM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	156	3969	-53	0	5prime_fragment	FALSE	canonical	3	448	junction_6	51.389579574938	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAGCGAAGTCATGGAAG	NA	False	NA	NA	False	NA	NA	NA	101308285	101301633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
transcript_24314.known	chr11	+	3223	5	FSM	ENSMUSG00000035007.6	ENSMUST00000040561.6	3223	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.27200187265877	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTCTGCACTCTCTAAG	NA	False	NA	35	True	AATAAA	-39	NA	101315910	101326499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101316437_101320277_101320437_101322173_101322373_101322907_101323025_101324277
transcript_24317.known	chr11	-	544	2	FSM	ENSMUSG00000075528.14	ENSMUST00000125472.2	544	2	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGAAGGGAAGGGATGAG	NA	False	NA	NA	False	NA	NA	NA	101308232	101307573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101308061_101308175
transcript_24318.known	chr11	-	853	7	FSM	ENSMUSG00000097487.8	ENSMUST00000107252.9	853	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.45205252953466	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCCTTCCCTTCCTGTA	NA	False	NA	-10	True	AATAAA	-14	NA	101315495	101309637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101310013_101310500_101310555_101312690_101312781_101314605_101314705_101314802_101314870_101314980_101315095_101315441
transcript_24320.known	chr11	+	614	5	FSM	ENSMUSG00000063316.14	ENSMUST00000077856.13	614	5	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_4	1985.8892844265	2396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2241	False	NA	62	True	ATTAAA	-18	NA	101333123	101336355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264
transcript_24325.known	chr11	+	732	4	FSM	ENSMUSG00000063316.14	ENSMUST00000107249.8	732	4	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_3	2031.83972465022	1590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2389	False	NA	62	True	ATTAAA	-18	NA	101333271	101336355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101333632_101334326_101334497_101336045_101336157_101336264
transcript_24327.known	chr11	+	536	3	FSM	ENSMUSG00000063316.14	ENSMUST00000139939.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	8909	junction_1	1362	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTTTGTTTGTCTTTTAG	2381	False	NA	NA	False	NA	NA	NA	101333263	101334760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101333283_101333548_101333632_101334326
transcript_24333.known	chr11	+	548	2	FSM	ENSMUSG00000063316.14	ENSMUST00000152162.2	548	2	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	4817	False	NA	62	True	ATTAAA	-18	NA	101335699	101336355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101336157_101336264
transcript_24334.known	chr11	+	1362	7	FSM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.33499983336666	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCATTCTCCAGCAAC	981	False	NA	NA	False	NA	NA	NA	101339232	101349524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716_101348824_101349026
transcript_2434.known	chr1	+	1307	4	FSM	ENSMUSG00000039323.19	ENSMUST00000047328.11	1307	4	0	0	0	0	multi-exon	FALSE	canonical	3	3391	junction_2	148.912353043288	8124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	1290	False	NA	18	True	AATAAA	-3	NA	72863661	72891633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_72864124_72888244_72888472_72888722_72888864_72891156
transcript_24341.nnic	chr11	-	2270	7	NNC	ENSMUSG00000034993.8	novel	2766	6	NA	NA	-23	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.514491923521	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTCCTGACCAGATGTTG	NA	False	NA	-14	True	AATAAA	-12	NA	101357079	101349573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_101349909_101350424_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
transcript_24345.known	chr11	-	2766	6	FSM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	0	0	0	0	multi-exon	TRUE	canonical	3	320	junction_5	13.7462722219517	2490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGACCAGATGTTGTAT	NA	False	NA	-11	True	AATAAA	-15	NA	101357056	101349570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
transcript_24348.known	chr11	+	831	5	FSM	ENSMUSG00000001313.13	ENSMUST00000134980.2	831	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	62.3097103186975	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCGATCTTCTGAGCG	8294	False	NA	NA	False	NA	NA	NA	101356309	101361931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
transcript_24349.known	chr11	+	1394	5	FSM	ENSMUSG00000001313.13	ENSMUST00000001347.7	1394	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	23.8051990119806	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	NA	False	NA	21	True	AATAAA	-21	NA	101359000	101362679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101359266_101359758_101359847_101360838_101360949_101361543_101361679_101361883
transcript_24351.known	chr11	-	6572	23	FSM	ENSMUSG00000017146.13	ENSMUST00000017290.11	6572	23	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	36.2819537137853	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGACAAAGAATGACTGA	NA	False	NA	-11	True	AATAAA	-15	NA	101442705	101379589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
transcript_24354.nic	chr11	-	2884	10	ISM	ENSMUSG00000017146.13	ENSMUST00000017290.11	6572	23	-78	35867	-2	-424	5prime_fragment	FALSE	canonical	3	276	junction_1	14.3819159423506	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACGTCAGGGACAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	101442783	101415456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
transcript_24355.nic	chr11	-	2278	10	ISM	ENSMUSG00000017146.13	ENSMUST00000017290.11	6572	23	-78	36473	-2	270	5prime_fragment	FALSE	canonical	3	276	junction_1	14.3819159423506	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAGAAATTAATGAACAA	NA	False	NA	NA	False	AATGAA	-37	NA	101442783	101416062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
transcript_24365.nic	chr11	+	4385	25	NIC	ENSMUSG00000017119.21	novel	4654	24	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_20	55.70358057512	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	935	False	NA	21	True	AATAAA	-24	NA	101443640	101472777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101465942_101466049_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
transcript_24366.known	chr11	+	4789	24	FSM	ENSMUSG00000017119.21	ENSMUST00000103099.8	4789	24	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	55.4078195296328	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	269	False	NA	21	True	AATAAA	-24	NA	101442974	101472777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101443412_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
transcript_24368.known	chr11	+	4654	24	FSM	ENSMUSG00000017119.21	ENSMUST00000103098.9	4654	24	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_17	38.3552196362625	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	774	False	NA	21	True	AATAAA	-24	NA	101443479	101472777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
transcript_2437.known	chr1	+	991	4	FSM	ENSMUSG00000039323.19	ENSMUST00000120564.2	991	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	1673.33041168404	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAAGTGTGTGTCTTAC	573	False	NA	11	True	ATTAAA	-11	NA	72864480	72891626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_72864634_72888244_72888472_72888722_72888864_72891156
transcript_24371.known	chr11	+	4344	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107208.8	4344	23	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_22	52.5711049377904	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	978	False	NA	21	True	AATAAA	-24	NA	101443683	101472777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101471410
transcript_24372.known	chr11	+	4392	23	FSM	ENSMUSG00000017119.21	ENSMUST00000123558.8	4392	23	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_21	57.5707434020768	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	978	False	NA	21	True	AATAAA	-24	NA	101443683	101472777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468757_101468864_101471410
transcript_24375.known	chr11	+	4339	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107213.8	4339	23	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_16	37.5030852725303	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	978	False	NA	21	True	AATAAA	-24	NA	101443683	101472777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
transcript_2438.known	chr1	-	6006	4	FSM	ENSMUSG00000026185.9	ENSMUST00000027377.9	6006	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCATCGCCTTCCTCCTG	NA	False	NA	NA	False	AATAAA	-18	NA	72914043	72897090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_72901668_72902301_72902422_72903009_72903240_72912964
transcript_24380.nic	chr11	+	4276	22	NIC	ENSMUSG00000017119.21	novel	4339	23	NA	NA	-43	0	intron_retention	FALSE	canonical	3	41	junction_21	53.0816766793681	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	935	False	NA	21	True	AATAAA	-24	NA	101443640	101472777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101471410
transcript_24393.known	chr11	+	2304	9	FSM	ENSMUSG00000034947.14	ENSMUST00000039581.14	2304	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.99843725578305	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAAGGGGCATTCCTGGA	3688	False	NA	NA	False	AATAAA	-17	NA	101473067	101482614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101473152_101473450_101473531_101474383_101474611_101475271_101475336_101477064_101477219_101479678_101479820_101479923_101479968_101480760_101480815_101481158
transcript_24400.nnic	chr11	+	890	4	NNC	ENSMUSG00000086617.2	novel	472	3	NA	NA	-45	679	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	2.05480466765633	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTAATGCCTGTGGGGT	NA	False	NA	4	True	AAAACA	-24	NA	101501394	101507461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_101501538_101501917_101502004_101506606_101506824_101507017
transcript_24403.known	chr11	+	1124	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	0	0	0	0	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	503	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518767	101526926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
transcript_24414.known	chr11	+	1382	2	FSM	ENSMUSG00000034936.3	ENSMUST00000039388.3	1382	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTGATCTGGTAACT	2550	False	NA	NA	False	ATTAAA	-18	NA	101556366	101558658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101556464_101557373
transcript_24416.known	chr11	+	4325	23	FSM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_7	24.6553097226675	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTTTATTATGACTTT	NA	False	NA	26	True	NA	NA	NA	101623775	101658184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634_101626721_101628482_101628593_101628955_101629388_101630529_101630675_101631488_101631693_101632326_101632415_101633901_101634000_101635931_101636080_101640710_101640893_101641703_101641899_101642836_101643023_101643110_101643322_101643973_101644156_101645557_101645699_101648418_101648575_101653034_101653173_101654722_101654852_101654970_101655168_101655603_101655784_101657465
transcript_24419.nic	chr11	+	643	5	ISM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	-48	29591	-17	2071	5prime_fragment	FALSE	canonical	3	176	junction_3	12.0830459735946	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTATGTCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	101623727	101628593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634_101626721_101628482
transcript_24420.nic	chr11	+	379	4	ISM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	53	31516	-26	146	5prime_fragment	FALSE	canonical	3	176	junction_3	11.4309521329882	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGGGAACTCTTCCCCG	NA	False	NA	NA	False	AAAAAG	-5	NA	101623828	101626668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634
transcript_24421.known	chr11	+	675	3	FSM	ENSMUSG00000034931.16	ENSMUST00000125409.2	675	3	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTGTTTGTTTTTTGCA	NA	False	NA	NA	False	NA	NA	NA	101623744	101626522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_101624015_101624981_101625068_101626203
transcript_24423.known	chr11	-	2377	13	FSM	ENSMUSG00000017724.15	ENSMUST00000107176.8	2377	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_11	4.75803414120673	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTATTTGCTCTTTGCT	NA	False	NA	-6	True	AATAAA	-19	NA	101676197	101660572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665054_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
transcript_24424.known	chr11	-	2395	13	FSM	ENSMUSG00000017724.15	ENSMUST00000017868.7	2395	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_11	4.74926894959167	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTATTTGCTCTTTGCT	NA	False	NA	-6	True	AATAAA	-19	NA	101676197	101660572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055_101675150_101675342_101675454_101675933
transcript_24430.nic	chr11	-	2239	11	ISM	ENSMUSG00000017724.15	ENSMUST00000017868.7	2395	13	829	0	-51	0	intron_retention	TRUE	canonical	2	11	junction_8	4.15210789840534	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTATTTGCTCTTTGCT	112	False	NA	-6	True	AATAAA	-19	NA	101675368	101660572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055
transcript_24432.known	chr11	-	2066	2	FSM	ENSMUSG00000001494.7	ENSMUST00000001534.7	2066	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGCTGTGGTCTTGTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	101857841	101853283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101855094_101857585
transcript_24433.known	chr11	-	4212	3	FSM	ENSMUSG00000003518.14	ENSMUST00000003612.13	4212	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTCTGTTTTGTGTTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	101875625	101861968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101865766_101872442_101872670_101875437
transcript_24439.known	chr11	-	391	2	FSM	ENSMUSG00000003518.14	ENSMUST00000143177.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAGGTCTGACTGGGAG	NA	False	NA	NA	False	NA	NA	NA	101875604	101865541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101865766_101875437
transcript_24440.known	chr11	-	2848	19	FSM	ENSMUSG00000052373.15	ENSMUST00000062801.11	2848	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.62231638249021	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGGTTGTCGTGTTGTC	NA	False	NA	NA	False	AATAAA	-31	NA	101917781	101890477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101891556_101892849_101892973_101895815_101895925_101896172_101896267_101899181_101899263_101899345_101899511_101900468_101900511_101901032_101901054_101902545_101902611_101904140_101904338_101907452_101907528_101909447_101909534_101911297_101911380_101914152_101914291_101914527_101914609_101915902_101915981_101916206_101916326_101916557_101916683_101917692
transcript_24442.known	chr11	-	4089	13	FSM	ENSMUSG00000017314.13	ENSMUST00000017458.11	4089	13	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	3.83242742918897	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTCTGTTTGTCATTG	7667	False	NA	NA	False	ATTAAA	-17	NA	101979341	101947840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_101950320_101951246_101951376_101951592_101951796_101952321_101952484_101952726_101952796_101952880_101952987_101953076_101953209_101954013_101954242_101955119_101955270_101955394_101955548_101971478_101971598_101976125_101976189_101979245
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transcript_24444.known	chr11	+	2028	7	FSM	ENSMUSG00000048217.12	ENSMUST00000055409.6	2028	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	3.13138237134266	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTGTCTCAAAAACCATC	NA	False	NA	12	True	NA	NA	NA	102036374	102040303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102036818_102037315_102037591_102037688_102037903_102038189_102038371_102038635_102038808_102038917_102039101_102039743
transcript_24448.known	chr11	+	2714	4	FSM	ENSMUSG00000048217.12	ENSMUST00000129799.8	2714	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTGTCTCAAAAACCATC	NA	False	NA	12	True	NA	NA	NA	102036338	102040303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102036818_102037315_102038808_102038917_102039101_102039743
transcript_24451.nic	chr11	-	1638	4	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	131.230924539742	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4465	False	NA	0	True	AATAAA	-16	NA	102047230	102043371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_102044421_102045382_102045530_102046549_102046731_102046969
transcript_24452.known	chr11	-	1574	4	FSM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	22.1710521977545	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4465	False	NA	0	True	AATAAA	-16	NA	102047230	102043371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102044421_102045382_102045530_102046549_102046731_102047033
transcript_24453.known	chr11	-	2256	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	0	0	0	0	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	358	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6356	False	NA	-1	True	AATAAA	-23	NA	102076122	102053322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
transcript_24458.known	chr11	+	1573	6	FSM	ENSMUSG00000034793.16	ENSMUST00000078975.8	1573	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	4.31740662898458	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTCTTGTCTGTGCTC	NA	False	NA	5	True	AATAAA	-19	NA	102080494	102084907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
transcript_24460.known	chr11	+	1404	7	FSM	ENSMUSG00000034793.16	ENSMUST00000070334.10	1404	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	57.3044985629885	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTCTTGTCTGTGCTC	NA	False	NA	5	True	AATAAA	-19	NA	102080445	102084907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102080479_102080696_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
transcript_24473.known	chr11	-	3872	28	FSM	ENSMUSG00000008855.18	ENSMUST00000124077.8	3872	28	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_25	66.6396241448948	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAACGTGTGCCGTGTGGG	NA	False	NA	-5	True	ATTAAA	-20	NA	102120965	102086574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102104750_102104863_102109241_102109314_102115559_102115782_102120830
transcript_2448.known	chr1	+	1439	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	0	0	0	0	multi-exon	FALSE	canonical	3	1389	junction_1	306.215936881149	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7828	False	NA	14	True	AATAAA	-19	NA	74275655	74307368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
transcript_24482.nnic	chr11	-	3706	27	NNC	ENSMUSG00000008855.18	novel	3872	28	NA	NA	-18	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	55.9502235455132	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102121010	102086572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088231_102088560_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109314_102115559_102115782_102120830
transcript_24493.known	chr11	-	3788	27	FSM	ENSMUSG00000008855.18	ENSMUST00000107152.9	3788	27	0	0	0	0	multi-exon	FALSE	canonical	1	50	junction_25	47.7576630363989	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAACGTGTGCCGTGTG	NA	False	NA	-7	True	ATTAAA	-18	NA	102120992	102086576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102109241_102109317_102115559_102115782_102120830
transcript_24516.nnic	chr11	-	3805	26	NIC	ENSMUSG00000008855.18	novel	3788	27	NA	NA	-88	0	combination_of_known_splicesites	FALSE	canonical	1	22	junction_24	52.2038466015676	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102121080	102086572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732_102097993_102115559_102115782_102120830
transcript_24519.nic	chr11	-	3900	26	NIC	ENSMUSG00000008855.18	novel	3872	28	NA	NA	-18	0	intron_retention	FALSE	canonical	1	78	junction_13	41.1161087653002	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	NA	False	NA	-3	True	ATTAAA	-22	NA	102121010	102086572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097601_102097732_102097993_102109241_102109314_102115559_102115782_102120830
transcript_2452.known	chr1	+	1313	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113819.2	1313	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	696.999605451825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTCC	7881	False	NA	18	True	NA	NA	NA	74275708	74307147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74275770_74275976_74276207_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
transcript_2456.nic	chr1	+	1018	10	ISM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	-31	3769	-31	-3547	5prime_fragment	TRUE	canonical	3	1389	junction_1	321.329183928949	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAACAATCACGTAAGTA	7797	False	NA	NA	False	AAAAAG	-4	NA	74275624	74303599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511
transcript_24592.nnic	chr11	+	2739	11	NNC	ENSMUSG00000034773.17	novel	2813	11	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	126.309144562062	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTCCCACACCTCCT	NA	False	NA	15	True	AATAAA	-22	NA	102139671	102156013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_102139919_102141504_102141556_102145289_102145446_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
transcript_24598.known	chr11	+	2547	10	FSM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_3	21.1502561056204	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTCCCACACCTCCT	NA	False	NA	15	True	AATAAA	-22	NA	102139707	102156013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
transcript_246.known	chr1	-	1894	5	FSM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	911.97762445139	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAAAACTCTCCCTCTTC	1649	False	NA	NA	False	AATAAA	-22	NA	4855933	4843428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_4844740_4847747_4847872_4852790_4852957_4854173_4854329_4855795
transcript_2460.known	chr1	+	1404	10	FSM	ENSMUSG00000006304.15	ENSMUST00000006467.14	1404	10	0	0	0	0	multi-exon	FALSE	canonical	3	1867	junction_3	197.32307280632	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAATTC	7848	False	NA	17	True	NA	NA	NA	74275675	74307146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
transcript_24628.known	chr11	+	1939	4	FSM	ENSMUSG00000034757.16	ENSMUST00000036376.13	1939	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	22.5437845585479	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175756	102180063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102175915_102176489_102176545_102178133_102178698_102178901
transcript_24629.known	chr11	+	1876	3	FSM	ENSMUSG00000034757.16	ENSMUST00000100387.11	1876	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	44	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175764	102180063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102175915_102178133_102178698_102178901
transcript_24630.known	chr11	+	2249	3	FSM	ENSMUSG00000034757.16	ENSMUST00000156326.2	2249	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	18.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102176021	102180063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102176545_102178133_102178698_102178901
transcript_24633.known	chr11	-	3688	13	FSM	ENSMUSG00000059995.13	ENSMUST00000073234.9	3688	13	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_12	22.3811676788023	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGCCTGCCCACTCTCA	NA	False	NA	-6	True	AATAAA	-19	NA	102187457	102180125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184148_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774_102185886_102187228
transcript_24634.nnic	chr11	-	4298	13	NNC	ENSMUSG00000059995.13	novel	3688	13	NA	NA	309	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_12	44.7631886214058	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGCCTGCCCACTCTCA	NA	False	NA	-6	True	AATAAA	-19	NA	102187146	102180125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184148_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774_102185886_102186307
transcript_24639.known	chr11	-	3706	13	FSM	ENSMUSG00000059995.13	ENSMUST00000107132.3	3706	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	41.9393576753653	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGGCCTGCCCACTCTC	NA	False	NA	-7	True	AATAAA	-18	NA	102187455	102180126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184169_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774_102185886_102187228
transcript_24641.known	chr11	-	3712	12	FSM	ENSMUSG00000059995.13	ENSMUST00000107134.8	3712	12	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_7	17.6967102513153	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGCCTGCCCACTCTCA	NA	False	NA	-6	True	AATAAA	-19	NA	102186138	102180125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102182630_102182723_102182882_102182961_102183034_102183267_102183312_102183530_102183600_102183892_102183922_102184101_102184148_102184471_102184495_102184669_102184768_102184959_102185132_102185335_102185469_102185774
transcript_24660.known	chr11	-	2759	21	FSM	ENSMUSG00000020923.18	ENSMUST00000107123.10	2759	21	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_20	173.298954122637	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGGGTGGGAGAGAGTCT	8206	False	NA	NA	False	NA	NA	NA	102208461	102197123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208407
transcript_24663.nnic	chr11	-	3258	21	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	270	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_20	179.182274513971	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTCGGCTGCCGTCTCTG	9277	False	NA	-9	True	NA	NA	NA	102209652	102196818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209404
transcript_24665.known	chr11	-	4692	21	FSM	ENSMUSG00000020923.18	ENSMUST00000174302.8	4692	21	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_20	166.063624855054	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCGTCTGGTCACTGGAA	9007	False	NA	34	True	AATAAA	-20	NA	102209922	102195385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
transcript_24679.known	chr11	-	3286	20	FSM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_14	97.0817686596932	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9161	False	NA	60	True	NA	NA	NA	102207506	102196749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
transcript_24681.known	chr11	-	3013	20	FSM	ENSMUSG00000020923.18	ENSMUST00000107119.9	3013	20	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_19	227.252992142399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTCGGCTGCCGTCTCTG	8554	False	NA	-9	True	NA	NA	NA	102208113	102196818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102207999
transcript_24682.known	chr11	-	3258	20	FSM	ENSMUSG00000020923.18	ENSMUST00000107117.9	3258	20	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_19	213.309601634771	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	7970	False	NA	60	True	NA	NA	NA	102208697	102196749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208407
transcript_24686.known	chr11	-	3213	20	FSM	ENSMUSG00000020923.18	ENSMUST00000006754.14	3213	20	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	260.634926855464	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9007	False	NA	60	True	NA	NA	NA	102209922	102196749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102197593_102197681_102197826_102197908_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
transcript_24695.known	chr11	-	3199	19	FSM	ENSMUSG00000020923.18	ENSMUST00000107115.8	3199	19	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_13	159.309621666601	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9137	False	NA	60	True	NA	NA	NA	102207530	102196749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
transcript_24729.known	chr11	-	1062	4	FSM	ENSMUSG00000020923.18	ENSMUST00000128016.2	1062	4	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_1	31.0161248385416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCAGCCATTCTCCTA	9136	False	NA	NA	False	NA	NA	NA	102207531	102204434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102204880_102204964_102205049_102205689_102205866_102207174
transcript_24731.known	chr11	+	1861	11	FSM	ENSMUSG00000006575.15	ENSMUST00000107105.9	1861	11	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	80.5806428368501	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGGGAGACAGAGACAT	7409	False	NA	11	True	NA	NA	NA	102284228	102292580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291462_102291625_102291719_102291827_102292214
transcript_24733.known	chr11	+	1822	11	FSM	ENSMUSG00000006575.15	ENSMUST00000107103.8	1822	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	76.5477628673758	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGGGAGACAGAGACAT	7409	False	NA	11	True	NA	NA	NA	102284228	102292580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102284609_102288396_102288513_102288925_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292214
transcript_24734.known	chr11	+	2046	11	FSM	ENSMUSG00000006575.15	ENSMUST00000006750.8	2046	11	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_7	30.0134969638661	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTCATCTGTTGGAGA	7409	False	NA	14	True	AATAAA	-16	NA	102284228	102293381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
transcript_2474.known	chr1	-	1756	11	FSM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_10	361.877106211487	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	-5	True	AATAAA	-13	NA	74323839	74319004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323204_74323661
transcript_24743.nic	chr11	+	2170	10	NIC	ENSMUSG00000006575.15	novel	2046	11	NA	NA	-17	0	intron_retention	FALSE	canonical	3	182	junction_1	28.2204723866982	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTCATCTGTTGGAGA	7392	False	NA	14	True	AATAAA	-16	NA	102284211	102293381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290872_102291486_102291625_102291719_102291827_102292806
transcript_24761.known	chr11	-	1606	12	FSM	ENSMUSG00000018677.10	ENSMUST00000107098.8	1606	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	1380.93231173247	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	7743	False	NA	NA	False	NA	NA	NA	102298315	102293810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296629_102297031_102297077_102297187_102297248_102297380_102297481_102298215
transcript_24764.known	chr11	-	1685	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	0	0	0	0	multi-exon	FALSE	canonical	3	4398	junction_3	174.765959202208	3845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	7688	False	NA	NA	False	NA	NA	NA	102298370	102293810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
transcript_24779.known	chr11	-	1564	11	FSM	ENSMUSG00000018677.10	ENSMUST00000153395.8	1564	11	0	0	0	0	multi-exon	FALSE	canonical	3	4398	junction_2	183.250211459632	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7726	False	NA	95	True	NA	NA	NA	102298332	102293970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102294362_102294458_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
transcript_24799.known	chr11	+	2331	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	1757	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTATCTGATTTGTTGC	4138	False	NA	15	True	AATAAA	-17	NA	102321147	102327633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
transcript_24822.nic	chr11	-	2862	26	ISM	ENSMUSG00000034664.14	ENSMUST00000103086.4	3437	30	2606	7	-78	0	3prime_fragment	FALSE	canonical	0	0	junction_4	1.63266653055668	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCATGCTGCCTTGGGGTC	7145	False	NA	NA	False	AATAAA	-19	NA	102358103	102344129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_102344344_102346389_102346507_102346724_102346827_102347055_102347173_102347790_102347911_102348010_102348155_102348285_102348386_102348597_102348679_102348938_102349019_102349167_102349261_102350698_102350847_102350963_102351032_102351341_102351468_102351574_102351727_102351815_102351872_102351954_102352060_102352143_102352190_102352462_102352646_102355765_102355978_102356130_102356184_102356322_102356377_102356536_102356581_102356715_102356764_102357082_102357212_102357302_102357349_102357879
transcript_24828.known	chr11	-	6871	8	FSM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	22.9658131018384	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTGGAGTCTGTTGTGA	637	False	NA	-3	True	AATAAA	-18	NA	102447025	102366740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
transcript_2483.known	chr1	-	2378	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGAGTTGCTGTGGCTT	NA	False	NA	-6	True	AATAAA	-22	NA	74343564	74327405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
transcript_24832.nic	chr11	-	613	7	ISM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	35	11635	12	-10343	5prime_fragment	FALSE	canonical	3	125	junction_1	18.2908598910919	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTCGGCGGCTCCATGA	672	False	NA	NA	False	AAGAAA	-10	NA	102446990	102378375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
transcript_24833.nnic	chr11	-	649	7	NNC	ENSMUSG00000034621.15	novel	390	6	NA	NA	15	10104	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	58.3628496753048	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAGGCACTCTGATTCTA	675	False	NA	NA	False	AATAAA	-38	NA	102446987	102388215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_102388336_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
transcript_24834.known	chr11	-	893	2	FSM	ENSMUSG00000034621.15	ENSMUST00000125754.2	893	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTAATGATACCAAGCCAG	444	False	NA	NA	False	NA	NA	NA	102447218	102428602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102429183_102446905
transcript_24840.known	chr11	-	818	3	FSM	ENSMUSG00000078640.10	ENSMUST00000107081.8	818	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	3.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTCTTTTTTTTT	8238	False	NA	NA	False	NA	NA	NA	102470287	102467223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102467624_102469575_102469722_102470015
transcript_24841.known	chr11	-	796	4	FSM	ENSMUSG00000078640.10	ENSMUST00000139829.2	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2.16024689946929	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTAAACTATTTTCATAT	4	True	NA	NA	False	NA	NA	NA	102470101	102467269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102467624_102467724_102467906_102469575_102469722_102469986
transcript_24843.known	chr11	+	4573	8	FSM	ENSMUSG00000051455.14	ENSMUST00000100378.4	4573	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	7.57277616039918	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTTAGTTTCATTTTT	NA	False	NA	3	True	AATAAA	-13	NA	102556413	102573063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102556657_102557161_102557312_102559127_102559286_102563009_102563115_102564864_102566738_102567559_102567695_102570757_102570939_102571335
transcript_24844.known	chr11	+	647	5	FSM	ENSMUSG00000051455.14	ENSMUST00000155813.2	647	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	12.0908022893437	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAGTAGATACATCTATC	NA	False	NA	NA	False	NA	NA	NA	102556448	102564950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102556597_102557161_102557312_102559127_102559286_102563009_102563115_102564864
transcript_24848.known	chr11	-	2366	5	FSM	ENSMUSG00000020925.17	ENSMUST00000092569.13	2366	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	239.593405585379	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTCTGTCTTGTTCTTT	NA	False	NA	-4	True	AATAAA	-16	NA	102588608	102575511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102577323_102579626_102579686_102581026_102581163_102582936_102583025_102588336
transcript_24851.known	chr11	-	407	4	FSM	ENSMUSG00000020925.17	ENSMUST00000124869.8	407	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	267.304237818175	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGACACAGAAAGGCGAAC	NA	False	NA	14	True	NA	NA	NA	102588362	102577165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102577323_102581026_102581163_102582936_102583025_102588336
transcript_24853.known	chr11	-	989	4	FSM	ENSMUSG00000020925.17	ENSMUST00000153157.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.304237818175	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCTTCTTGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	102588560	102579144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102579686_102581026_102581163_102582936_102583025_102588336
transcript_24854.known	chr11	-	875	3	FSM	ENSMUSG00000020925.17	ENSMUST00000138147.2	875	3	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_2	39	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAAATCTCGTGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	102588496	102580535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102581163_102582936_102583025_102588336
transcript_24857.known	chr11	+	5102	26	FSM	ENSMUSG00000020926.17	ENSMUST00000068150.7	5102	26	0	0	0	0	multi-exon	TRUE	canonical	2	11	junction_6	5.6661803712907	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATGTCTCTCCTCTCTCT	NA	False	NA	32	True	ATTAAA	-43	NA	102652264	102671088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102652511_102652973_102653159_102660719_102660797_102660946_102661014_102662060_102662147_102662260_102662337_102662740_102662808_102662870_102662939_102663280_102663356_102663437_102663510_102663660_102663828_102664219_102664305_102664402_102664494_102664600_102664653_102665091_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
transcript_24876.nnic	chr11	-	2494	5	NNC	ENSMUSG00000034520.15	novel	2314	3	NA	NA	-228	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	305.092096751129	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710264	102690404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_102692022_102693666_102693743_102695106_102695339_102700471_102700572_102709795
transcript_24887.nnic	chr11	-	2405	4	NNC	ENSMUSG00000034520.15	novel	2314	3	NA	NA	-239	0	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_3	300.941854849072	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710275	102690404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_102692022_102693666_102693743_102695106_102695339_102709795
transcript_24888.nnic	chr11	-	2076	4	NNC	ENSMUSG00000034520.15	novel	2314	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_3	328.11515593699	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710036	102690404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_102692022_102693666_102693743_102695106_102695339_102709885
transcript_2489.known	chr1	+	2937	10	FSM	ENSMUSG00000026179.15	ENSMUST00000027370.13	2937	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	408.826988068106	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGGTCTGAGCTCTCA	NA	False	NA	3	True	NA	NA	NA	74324203	74392843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74324297_74325000_74325170_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
transcript_24891.nnic	chr11	-	2262	4	NNC	ENSMUSG00000034520.15	novel	1903	3	NA	NA	-228	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_2	340.826446548191	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710264	102690404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_102692022_102693666_102693743_102700471_102700572_102709795
transcript_24897.known	chr11	-	1903	3	FSM	ENSMUSG00000034520.15	ENSMUST00000068933.12	1903	3	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_2	138	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710005	102690404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102692022_102693666_102693743_102709795
transcript_24898.known	chr11	-	247	3	FSM	ENSMUSG00000034520.15	ENSMUST00000131164.2	247	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	360	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTTGGAGCTTCCTGAC	NA	False	NA	NA	False	NA	NA	NA	102710036	102692001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102692022_102693666_102693743_102709885
transcript_24899.known	chr11	-	1890	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	376	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710526	102690404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102692022_102693666_102693743_102710329
transcript_2492.known	chr1	+	2859	9	FSM	ENSMUSG00000026179.15	ENSMUST00000087225.6	2859	9	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	11.428445869846	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTCTGAGCTCTCAAT	9363	False	NA	5	True	NA	NA	NA	74371768	74392845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74371951_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
transcript_24920.known	chr11	-	3324	28	FSM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_26	264.162864923118	3295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8466	False	NA	-5	True	TATAAA	-22	NA	102771793	102729298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
transcript_2495.known	chr1	+	740	3	FSM	ENSMUSG00000026179.15	ENSMUST00000113805.8	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	1381	junction_1	89	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCAGGTTGAATTTGT	NA	False	NA	6	True	AATAAA	-24	NA	74324088	74326613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74324297_74325000_74325170_74326250
transcript_2499.known	chr1	+	881	2	FSM	ENSMUSG00000026179.15	ENSMUST00000129219.2	881	2	0	0	0	0	multi-exon	FALSE	canonical	3	1381	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTGTGCACAAGCTTAAC	NA	False	NA	NA	False	NA	NA	NA	74324208	74325793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74324297_74325000
transcript_25.known	ERCC-00073	+	587	1	FSM	ERCC-00073A	DQ668358	587	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00073_+_0_600
transcript_250.known	chr1	-	910	5	FSM	ENSMUSG00000033845.14	ENSMUST00000115538.5	910	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	946.266446356416	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1620	False	NA	-10	True	ATTAAA	-22	NA	4855962	4846599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_4847025_4847747_4847872_4852790_4852830_4854173_4854329_4855795
transcript_25002.known	chr11	-	796	2	FSM	ENSMUSG00000020929.15	ENSMUST00000148209.2	796	2	0	0	0	0	multi-exon	FALSE	canonical	3	1254	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTGTCTCAAAAAAAAAAAG	8498	False	NA	NA	False	NA	NA	NA	102771761	102767789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102768545_102771720
transcript_25004.known	chr11	-	3339	28	FSM	ENSMUSG00000020929.15	ENSMUST00000107060.8	3339	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_26	289.083827865911	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8448	False	NA	-5	True	TATAAA	-22	NA	102771811	102729298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762009_102768435_102768545_102771720
transcript_25005.known	chr11	+	1841	5	FSM	ENSMUSG00000020930.10	ENSMUST00000021307.10	1841	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCGCCTCTGCAGTTCAC	NA	False	NA	NA	False	AATAAA	-16	NA	102772029	102776042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102772142_102773177_102773258_102773370_102773523_102773899_102774033_102774678
transcript_25009.known	chr11	-	3326	16	FSM	ENSMUSG00000051378.11	ENSMUST00000021311.10	3326	16	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_10	31.928809700471	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGGAAAGTTAGTGCT	3724	False	NA	-7	True	AATAAA	-32	NA	102815950	102796354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805752_102805975_102806081_102806368_102806527_102807014_102807342_102815808
transcript_25018.known	chr11	-	1473	2	FSM	ENSMUSG00000045532.6	ENSMUST00000057849.6	1473	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGATTTCAGTCTGTGCC	8659	False	NA	-10	True	AATAAA	-16	NA	102837514	102830089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102830739_102836690
transcript_2502.known	chr1	+	2315	15	FSM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	14.5525087254426	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	4971	False	NA	NA	False	NA	NA	NA	74414361	74425221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74414481_74414876_74415011_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
transcript_25023.known	chr11	-	1744	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	0	0	0	0	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8193	False	NA	-5	True	NA	NA	NA	102907994	102884872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
transcript_25025.known	chr11	+	449	3	FSM	ENSMUSG00000020936.9	ENSMUST00000135332.2	449	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	516.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAGAAAAAGAAACA	NA	False	NA	29	True	NA	NA	NA	102919015	102934024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102919256_102919350_102919529_102933993
transcript_2503.known	chr1	+	2584	14	FSM	ENSMUSG00000026177.12	ENSMUST00000147233.8	2584	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	14.9123672911061	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCTTAAAGAG	4971	False	NA	NA	False	NA	NA	NA	74414361	74425211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74414481_74414876_74415011_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74423333_74423855_74423930_74424299_74424454_74424551
transcript_25033.nnic	chr11	-	2872	15	NNC	ENSMUSG00000020937.15	novel	3023	15	NA	NA	3795	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_14	7.81449464332866	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTACCTTTCCACT	8987	False	NA	NA	False	AGTAAA	-2	NA	102988622	102961129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682_102965830_102967539_102967693_102968307_102968453_102968586_102968789_102969064_102969294_102970365_102970496_102971012_102971242_102971329_102971492_102988494
transcript_25034.known	chr11	-	3023	15	FSM	ENSMUSG00000020937.15	ENSMUST00000103077.2	3023	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_14	6.65168384389875	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTACCTTTCCACT	9409	False	NA	NA	False	AGTAAA	-2	NA	102992484	102961129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682_102965830_102967539_102967693_102968307_102968453_102968586_102968789_102969064_102969294_102970365_102970496_102971012_102971242_102971329_102971492_102992205
transcript_25048.nic	chr11	+	2212	11	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	-1	0	intron_retention	FALSE	canonical	3	19	junction_2	40.6811995889993	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102992510	103003023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_102992615_102993507_102993923_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
transcript_25052.nic	chr11	+	2261	11	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	-1	0	intron_retention	FALSE	canonical	3	42	junction_2	36.0373417443629	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102992510	103003023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_102992615_102993507_102993972_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
transcript_25053.known	chr11	+	2083	10	FSM	ENSMUSG00000056938.17	ENSMUST00000092559.13	2083	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	33.6455746177417	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992507	103003026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
transcript_25056.nic	chr11	+	2126	10	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	44	junction_2	34.5350063944784	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102992510	103003023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_102992615_102993507_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
transcript_2506.nic	chr1	+	2255	13	ISM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	1397	0	-57	0	3prime_fragment	FALSE	canonical	2	4	junction_7	13.8774397254441	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	6368	False	NA	NA	False	NA	NA	NA	74415758	74425221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
transcript_25064.nic	chr11	+	2506	9	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	68	junction_1	25.5477494116409	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	3	True	ATTAAA	-13	NA	102992510	103003023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_102992615_102993507_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
transcript_25073.known	chr11	+	1910	3	FSM	ENSMUSG00000043372.13	ENSMUST00000062530.5	1910	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	11.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGAACTTGTGGCCTG	NA	False	NA	-10	True	NA	NA	NA	103024170	103030702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_103024284_103024860_103024968_103029012
transcript_25075.known	chr11	+	654	3	FSM	ENSMUSG00000043372.13	ENSMUST00000124928.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	13	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACAGTGATGGGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	103024164	103029472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_103024249_103024857_103024968_103029012
transcript_2508.known	chr1	+	2876	7	FSM	ENSMUSG00000026176.14	ENSMUST00000027367.14	2876	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	3.53160335006952	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGCCCCCACCTCTGGAA	3310	False	NA	NA	False	AATAAA	-17	NA	74430667	74436444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74431124_74432436_74432586_74432955_74433061_74433177_74433235_74433798_74433892_74433995_74434182_74434614
transcript_25083.known	chr11	+	3824	27	FSM	ENSMUSG00000055805.16	ENSMUST00000218163.2	3824	27	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_15	7.11320132824136	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTCGGCTCGGTGCCT	5048	False	NA	23	True	AATAAA	-16	NA	103061932	103089727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_103062268_103070341_103070426_103071707_103071822_103072534_103072609_103072911_103072996_103073467_103073594_103073841_103073860_103076446_103076556_103077236_103077314_103077438_103077533_103080751_103080827_103081121_103081233_103082840_103082991_103083504_103083607_103083775_103084029_103084273_103084562_103084753_103084879_103085451_103085655_103086084_103086320_103086435_103086505_103087086_103087168_103087241_103087372_103087510_103087675_103087903_103088006_103088140_103088222_103088483_103088605_103089308
transcript_25088.known	chr11	+	3806	26	FSM	ENSMUSG00000055805.16	ENSMUST00000042286.12	3806	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	9.20208671986958	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTCGGCTCGGTGCCT	5048	False	NA	23	True	AATAAA	-16	NA	103061932	103089727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_103062268_103070341_103070426_103071707_103071822_103072534_103072609_103072911_103072996_103073467_103073594_103076446_103076556_103077236_103077314_103077438_103077533_103080751_103080827_103081121_103081233_103082840_103082991_103083504_103083607_103083775_103084029_103084273_103084562_103084753_103084879_103085451_103085655_103086084_103086320_103086435_103086505_103087086_103087168_103087241_103087372_103087510_103087675_103087903_103088006_103088140_103088222_103088483_103088605_103089308
transcript_25093.nic	chr11	-	597	2	ISM	ENSMUSG00000020940.14	ENSMUST00000021323.11	1199	10	8809	0	8783	0	intron_retention	FALSE	canonical	3	22	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGCTGCGCCTAGTGGGA	NA	False	NA	NA	False	AGTAAA	-17	NA	103090565	103089769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_103089945_103090143
transcript_25094.known	chr11	-	4246	16	FSM	ENSMUSG00000020941.8	ENSMUST00000021324.3	4246	16	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	1.87853370714738	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGTTTGTAGGCTGTGA	NA	False	NA	NA	False	AATAAA	-15	NA	103158298	103110587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_103112016_103112324_103112426_103115071_103115217_103115859_103115967_103116115_103116449_103117812_103117964_103118357_103118522_103121157_103121263_103121857_103121990_103122182_103122313_103128323_103128462_103129757_103130379_103130457_103130669_103131862_103131933_103132940_103133216_103158163
transcript_25095.nic	chr11	-	2753	8	ISM	ENSMUSG00000020941.8	ENSMUST00000021324.3	4246	16	36817	0	-8808	0	3prime_fragment	FALSE	canonical	1	3	junction_4	2.18529407725405	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGTTTGTAGGCTGTGA	NA	False	NA	NA	False	AATAAA	-15	NA	103121481	103110587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_103112016_103112324_103112426_103115071_103115217_103115859_103115967_103116115_103116449_103117812_103117964_103118357_103118522_103121157
transcript_25097.nic	chr11	-	4386	18	FSM	ENSMUSG00000034255.19	ENSMUST00000107024.9	4261	18	-126	1	-69	0	multi-exon	FALSE	canonical	2	3	junction_6	4.84999910819383	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGCGAATGTACTCTG	8048	False	NA	-1	True	NA	NA	NA	103254359	103222323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103251072_103251745_103253032_103253161_103254094
transcript_25098.nic	chr11	-	3439	16	NIC	ENSMUSG00000034255.19	novel	3512	16	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_15	5.57215298505783	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGCGAATGTACTCTG	NA	False	NA	-1	True	NA	NA	NA	103247208	103222323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103247090
transcript_25105.known	chr11	-	5968	12	FSM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_6	16.0020659823186	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTTGTGTTTAGTGTCTAT	NA	False	NA	-2	True	AATAAA	-17	NA	103303513	103255100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_103257820_103258423_103258582_103258933_103258998_103261687_103261882_103264765_103264912_103267418_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
transcript_2511.nic	chr1	+	2557	7	NIC	ENSMUSG00000026176.14	novel	393	4	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	7.90393713425292	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGTGCCCCCACCTCTG	3911	False	NA	NA	False	AATAAA	-14	NA	74431268	74436441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_74431409_74432436_74432586_74432955_74433061_74433177_74433235_74433798_74433892_74433995_74434182_74434614
transcript_25110.nic	chr11	-	3180	7	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	-38	11863	-38	-9521	5prime_fragment	FALSE	canonical	3	46	junction_1	16.3647656737136	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCCACTGTATTGGACAA	NA	False	NA	NA	False	NA	NA	NA	103303551	103266963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
transcript_25113.known	chr11	-	1504	3	FSM	ENSMUSG00000034255.19	ENSMUST00000092557.6	1504	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTATAGCCTCGGAATCT	8117	False	NA	NA	False	NA	NA	NA	103254290	103250564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_103251745_103253032_103253161_103254094
transcript_25114.known	chr11	-	3976	16	ISM	ENSMUSG00000034255.19	ENSMUST00000107024.9	4261	18	2507	0	2507	0	3prime_fragment	TRUE	canonical	2	3	junction_6	4.91075916285411	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGCGAATGTACTCTGG	NA	False	NA	0	True	NA	NA	NA	103251726	103222322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103251072
transcript_25117.known	chr11	-	3266	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	0	0	0	0	multi-exon	TRUE	canonical	3	264	junction_1	54.6867442804927	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588724	103567674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
transcript_25119.known	chr11	-	917	5	FSM	ENSMUSG00000020946.14	ENSMUST00000145265.2	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	142.958910180513	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGTGAGGCTTTTACA	NA	False	NA	NA	False	NA	NA	NA	103588524	103569758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103588455
transcript_25120.known	chr11	-	1044	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	134.545531326759	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTGGAAGCAGCTACTC	NA	False	NA	NA	False	AAGAAA	-40	NA	103588520	103569551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
transcript_25124.known	chr11	+	3076	5	FSM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4790199457749	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAAAATCTATTTCATC	NA	False	NA	NA	False	NA	NA	NA	103664975	103708783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_103665175_103698975_103699218_103702153_103702420_103703106_103703595_103706902
transcript_25127.nic	chr11	-	2991	22	NIC	ENSMUSG00000034187.19	novel	3766	21	NA	NA	12	332	combination_of_known_junctions	FALSE	canonical	3	14	junction_21	89.2116899491472	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATAATTTACAAGCCT	NA	False	NA	-48	True	NA	NA	NA	103844870	103713418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103821901_103821950_103844795
transcript_25129.known	chr11	-	3766	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	103844882	103712607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
transcript_25151.known	chr11	+	2242	5	FSM	ENSMUSG00000062421.14	ENSMUST00000057921.10	2242	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	7.43303437365925	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCATGTTCTCCTGGA	NA	False	NA	31	True	AATAAA	-20	NA	103857564	103876163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_103857654_103859904_103860072_103863778_103863890_103872519_103872645_103874413
transcript_25152.known	chr11	+	2460	13	FSM	ENSMUSG00000018634.11	ENSMUST00000093925.5	2460	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.276385399196283	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTGTGAAGACGTTCACT	NA	False	NA	NA	False	TATAAA	-22	NA	104023680	104066349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_104023931_104044346_104044435_104050077_104050198_104054629_104054716_104059881_104059989_104060658_104060780_104060947_104061102_104061305_104061367_104063736_104063810_104064131_104064218_104064420_104064557_104064714_104064757_104065213
transcript_25158.known	chr11	+	5253	10	FSM	ENSMUSG00000018411.18	ENSMUST00000106992.10	5253	10	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	196.187551989303	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATCTCTGTTCATGAG	NA	False	NA	NA	False	AATAAA	-19	NA	104122215	104222916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_104122434_104173193_104173307_104185684_104185751_104193186_104193237_104197451_104197585_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
transcript_2516.known	chr1	+	2957	6	FSM	ENSMUSG00000026176.14	ENSMUST00000141175.2	2957	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	2.41660919471891	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGTGCCCCCACCTCTG	3596	False	NA	NA	False	AATAAA	-14	NA	74430953	74436441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74431124_74432436_74433061_74433177_74433235_74433798_74433892_74433995_74434182_74434614
transcript_25197.nnic	chr11	+	868	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8391	0	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	9465	False	NA	NA	False	NA	NA	NA	104200467	104219067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_25198.nnic	chr11	+	1062	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8391	0	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGGAAAAAAAAACATGTA	9465	False	NA	5	True	AATAAA	-9	NA	104200467	104219261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_25199.nnic	chr11	+	2722	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8391	1660	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAAGA	9465	False	NA	NA	False	NA	NA	NA	104200467	104220921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_252.known	chr1	-	4203	5	FSM	ENSMUSG00000033845.14	ENSMUST00000156816.7	4203	5	0	0	0	0	multi-exon	FALSE	canonical	3	2059	junction_1	113.670576667843	1084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACCTTAAAACTCTCCC	1620	False	NA	NA	False	AATAAA	-17	NA	4855962	4843433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
transcript_25203.nnic	chr11	+	924	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8204	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	9652	False	NA	NA	False	NA	NA	NA	104200654	104219067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_25204.nnic	chr11	+	1118	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8204	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGGAAAAAAAAACATGTA	9652	False	NA	5	True	AATAAA	-9	NA	104200654	104219261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_25211.nnic	chr11	+	4131	3	NNC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	-8391	7704	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	144	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTTAAAAATAGGAAAGG	9465	False	NA	NA	False	AAAACA	-9	NA	104200467	104205288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_104200605_104201094_104203538_104203737
transcript_25218.known	chr11	-	5427	15	FSM	ENSMUSG00000018412.17	ENSMUST00000106972.8	5427	15	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_14	49.1984735120752	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTCAGGCTTTTCTTG	8169	False	NA	-2	True	NA	NA	NA	104333117	104224326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104332550
transcript_25227.known	chr11	-	5061	15	FSM	ENSMUSG00000018412.17	ENSMUST00000018556.11	5061	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_14	71.2238494796081	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTCAGGCTTTTCTTG	7559	False	NA	-2	True	NA	NA	NA	104359687	104224326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104358464_104358579_104359411
transcript_25228.nnic	chr11	-	4612	15	NNC	ENSMUSG00000018412.17	novel	5061	15	NA	NA	-588	-161	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_14	61.3522782039618	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTATTTTGTAAATATTT	9744	False	NA	NA	False	NA	NA	NA	104360275	104224531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104358464_104358579_104360243
transcript_25230.known	chr11	-	5510	14	FSM	ENSMUSG00000018412.17	ENSMUST00000106977.8	5510	14	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_6	53.9110597824222	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAATCAATGGAAGTAAGT	8169	False	NA	NA	False	NA	NA	NA	104333117	104224054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104332550
transcript_2524.nic	chr1	-	7199	25	NIC	ENSMUSG00000033364.14	novel	7111	24	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	147	junction_23	24.5588861491903	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTAGTTTGATTTATTTG	NA	False	NA	-1	True	ATTAAA	-16	NA	74544984	74474669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
transcript_25245.known	chr11	-	3160	19	FSM	ENSMUSG00000020687.14	ENSMUST00000106962.9	3160	19	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_11	53.6541278197565	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGATCATTGTTGTCTT	2294	False	NA	NA	False	NA	NA	NA	104441218	104395762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411663_104412206_104412415_104413548_104413649_104416876_104417011_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
transcript_2526.nic	chr1	-	5140	25	NIC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	-21	158	combination_of_known_junctions	FALSE	canonical	3	147	junction_23	24.5588861491903	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGCATCATGGCATGA	NA	False	NA	19	True	TTTAAA	-11	NA	74544986	74476730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
transcript_25261.nic	chr11	-	1501	11	ISM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	-173	18783	-36	-1274	5prime_fragment	FALSE	canonical	3	170	junction_6	29.5323551380516	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAACTAATAAAGGAGGA	2030	False	NA	NA	False	AATGAA	-36	NA	104441482	104412353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
transcript_25262.nic	chr11	-	1369	11	NIC	ENSMUSG00000020687.14	novel	5425	19	NA	NA	-19	-1274	combination_of_known_junctions	FALSE	canonical	3	52	junction_10	54.4514462617845	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAACTAATAAAGGAGGA	2047	False	NA	NA	False	AATGAA	-36	NA	104441465	104412353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441303
transcript_25264.nic	chr11	-	1441	10	ISM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	-173	19977	-36	-2468	5prime_fragment	FALSE	canonical	3	170	junction_5	31.1142855523327	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATTTCTGCCTATTTA	2030	False	NA	NA	False	NA	NA	NA	104441482	104413547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
transcript_25267.nic	chr11	+	568	4	ISM	ENSMUSG00000061086.13	ENSMUST00000123074.8	677	6	3974	-6	-665	0	3prime_fragment	FALSE	canonical	3	41	junction_3	1.69967317119759	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	False	NA	12	True	AATAAA	-26	NA	104475124	104478041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_104475439_104475762_104475841_104476552_104476598_104477910
transcript_25268.known	chr11	+	900	7	FSM	ENSMUSG00000061086.13	ENSMUST00000106956.10	900	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.2243309016379	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	False	NA	12	True	AATAAA	-26	NA	104468106	104478041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_104468401_104471227_104471256_104474803_104474954_104475264_104475439_104475762_104475841_104476552_104476598_104477910
transcript_25274.known	chr11	+	1867	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_6	21.0698243941424	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105017250	105031220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
transcript_25287.known	chr11	+	2556	8	FSM	ENSMUSG00000020691.14	ENSMUST00000136214.8	2556	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	88.9260183225015	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105017304	105031220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_105018268_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
transcript_2529.nic	chr1	-	5061	25	NIC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	-100	0	combination_of_known_junctions	FALSE	canonical	3	147	junction_23	24.5588861491903	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGAGTCTCCTTTTGTCT	NA	False	NA	-1	True	TTTAAA	-32	NA	74545065	74476888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
transcript_25297.nic	chr11	+	1675	2	ISM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	54	12072	0	-7334	5prime_fragment	FALSE	canonical	3	278	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTACAAGGGAAAATAATTA	NA	False	NA	NA	False	NA	NA	NA	105017304	105019148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_105017433_105017601
transcript_25301.known	chr11	+	3699	22	FSM	ENSMUSG00000020694.18	ENSMUST00000106941.9	3699	22	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	59.3191529336175	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCCTGGATTCTCTGAT	NA	False	NA	26	True	AATAAA	-19	NA	105072352	105173003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105101370_105101467_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
transcript_25304.nic	chr11	+	3597	21	NIC	ENSMUSG00000020694.18	novel	3699	22	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	84.4375508882156	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCCTGGATTCTCTGAT	NA	False	NA	26	True	AATAAA	-19	NA	105072358	105173003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105101370_105101467_105112011_105112180_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
transcript_25305.known	chr11	+	3212	21	FSM	ENSMUSG00000020694.18	ENSMUST00000015107.13	3212	21	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	74.0480249567806	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCCTGGATTCTCTGA	NA	False	NA	25	True	AATAAA	-18	NA	105072742	105173002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
transcript_25306.known	chr11	+	2743	20	FSM	ENSMUSG00000020694.18	ENSMUST00000092537.10	2743	20	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	62.1637993541137	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAAAAACATACTGTG	NA	False	NA	-7	True	GATAAA	-11	NA	105072618	105167285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105101370_105101467_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662
transcript_25319.nic	chr11	-	3057	7	NIC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	64.1320252811859	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835275	105824527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105834936
transcript_2532.nic	chr1	-	3990	25	NIC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	-100	326	combination_of_known_junctions	FALSE	canonical	3	147	junction_23	24.5588861491903	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTATTTCTGTAGCCTGA	NA	False	NA	-5	True	ACTAAA	-22	NA	74545065	74477959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
transcript_25320.nnic	chr11	-	2769	7	NNC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-561	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	70.9475549653091	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835874	105824527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105835823
transcript_25323.known	chr11	-	2741	6	FSM	ENSMUSG00000019590.17	ENSMUST00000019734.11	2741	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	37.6690854680599	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835238	105824527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105834936
transcript_25324.nnic	chr11	-	2490	6	NNC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-561	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	67.416318499307	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835874	105824527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105835823
transcript_25325.known	chr11	-	1130	6	FSM	ENSMUSG00000019590.17	ENSMUST00000184086.8	1130	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	71.4898594207598	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGCTAGACAATAGCTC	NA	False	NA	NA	False	NA	NA	NA	105834965	105825909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_105826394_105826577_105826780_105827007_105827112_105827380_105827480_105828454_105828667_105834936
transcript_25336.known	chr11	+	5750	7	FSM	ENSMUSG00000049354.9	ENSMUST00000058438.9	5750	7	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_6	15.5527775297176	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGATGAATTCA	4745	False	NA	15	True	AATAAA	-24	NA	105927697	105950150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_105928088_105937516_105937676_105938462_105938575_105938968_105939088_105942582_105942793_105944556_105944675_105945508
transcript_25339.known	chr11	+	1383	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	5.93717104351896	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCTTGAGGTGTCCTGA	874	False	NA	26	True	NA	NA	NA	105956886	105964438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
transcript_2534.known	chr1	-	7111	24	FSM	ENSMUSG00000033364.14	ENSMUST00000044260.11	7111	24	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_8	42.9588980155981	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTAGTTTGATTTATTTG	NA	False	NA	-1	True	ATTAAA	-16	NA	74544962	74474669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
transcript_25348.known	chr11	+	3450	16	FSM	ENSMUSG00000020700.12	ENSMUST00000002044.10	3450	16	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	10.0066644459247	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCAGTGCCCAGGGATG	192	False	NA	NA	False	NA	NA	NA	105975438	106046272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_105975760_105987816_105987939_106001569_106001611_106005009_106005110_106008315_106008430_106014611_106014733_106033250_106033385_106036511_106036586_106039390_106039459_106039639_106039733_106040307_106040500_106041095_106041245_106041834_106041967_106042443_106042574_106043042_106043221_106044791
transcript_25364.known	chr11	-	798	5	FSM	ENSMUSG00000040699.14	ENSMUST00000064545.11	798	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	116.808336603172	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACAAGCCCAGCTTCCCTA	NA	False	NA	NA	False	NA	NA	NA	106050753	106049256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106050638
transcript_25365.known	chr11	-	2950	5	FSM	ENSMUSG00000040699.14	ENSMUST00000045923.10	2950	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	24.7638849940796	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGCATGTCCACAGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	106050968	106047081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106050876
transcript_25367.nnic	chr11	-	1180	5	NIC	ENSMUSG00000040699.14	novel	2950	5	NA	NA	-43	273	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	113.415993140297	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGACTCTCTTGTGTGGC	NA	False	NA	-14	True	TTTAAA	-15	NA	106051011	106048866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050241_106050876
transcript_25374.known	chr11	-	2099	13	FSM	ENSMUSG00000069631.15	ENSMUST00000007444.14	2099	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	54.9804889635102	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTAAAATTTTCAGAGA	NA	False	NA	-34	True	NA	NA	NA	106084362	106054176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106071780_106071810_106075387_106075446_106077926_106078007_106084291
transcript_25375.nnic	chr11	-	2163	13	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	-31	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_9	55.6661676624341	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGAATGGCACCAGTG	NA	False	NA	-13	True	ATTAAA	-13	NA	106084429	106054155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106071780_106071810_106075387_106075446_106077950_106078007_106084291
transcript_25377.known	chr11	-	5193	13	FSM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_6	38.2117637500402	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTCATGGTTAGGCATC	NA	False	NA	NA	False	AATAGA	-32	NA	106107170	106088233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
transcript_25379.nnic	chr11	-	3167	13	NNC	ENSMUSG00000078622.9	novel	5193	13	NA	NA	-482	1425	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_12	175.732336713158	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCTGCTTTGACTT	NA	False	NA	-4	True	ATTAAA	-14	NA	106107652	106090179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106107536
transcript_25389.nic	chr11	-	4307	12	NIC	ENSMUSG00000078622.9	novel	5193	13	NA	NA	-66	1425	intron_retention	FALSE	canonical	3	609	junction_5	39.8138229245543	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCTGCTTTGACTT	NA	False	NA	-4	True	ATTAAA	-14	NA	106107236	106090179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
transcript_25393.nic	chr11	-	1591	12	ISM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	-66	4662	-66	-65	5prime_fragment	FALSE	canonical	3	609	junction_5	39.8138229245543	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTGAGAAGGAGCGGATC	NA	False	NA	NA	False	NA	NA	NA	106107236	106092895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
transcript_25397.nnic	chr11	-	2101	11	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	-32	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_9	25.5305699113827	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGAATGGCACCAGTG	NA	False	NA	-13	True	ATTAAA	-13	NA	106084430	106054155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077926_106078007_106084291
transcript_25399.known	chr11	-	1517	11	FSM	ENSMUSG00000069631.15	ENSMUST00000103072.10	1517	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	16.6340013225922	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCACCAGGGACTTGGA	NA	False	NA	NA	False	NA	NA	NA	106084388	106054673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
transcript_25401.nic	chr11	-	1399	11	ISM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	-2	4995	-2	-398	5prime_fragment	FALSE	canonical	3	609	junction_4	41.6648532938735	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCCGACTCAACAGAGAAG	NA	False	NA	NA	False	GATAAA	-9	NA	106107172	106093228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
transcript_25404.nic	chr11	-	1014	6	ISM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	-66	10598	-66	-3713	5prime_fragment	FALSE	canonical	3	629	junction_3	16.8689063071676	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTATTCCTGCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	106107236	106098831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
transcript_25405.nic	chr11	-	566	3	ISM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	-2	14286	-2	-7401	5prime_fragment	FALSE	canonical	3	641	junction_2	8.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCCAATAACAATTGTTGA	NA	False	NA	NA	False	AATAAA	-1	NA	106107172	106102519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_106102607_106103906_106104188_106106974
transcript_25411.nnic	chr11	+	3899	18	NNC	ENSMUSG00000020705.7	novel	445	2	NA	NA	-492	0	at_least_one_novel_splicesite	FALSE	canonical	2	54	junction_1	112.518818110864	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTTTATCTTTTTATT	NA	False	NA	28	True	ATTAAA	-15	NA	106107259	106139965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_106107379_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
transcript_25414.known	chr11	+	4011	18	FSM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	0	0	0	0	multi-exon	FALSE	canonical	2	294	junction_3	62.7187383355908	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTTTATCTTTTTATT	NA	False	NA	28	True	ATTAAA	-15	NA	106107751	106139965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
transcript_25428.nic	chr11	+	715	4	ISM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	-57	20339	-57	-10024	5prime_fragment	FALSE	canonical	2	294	junction_3	58.7329171381395	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGACAAGGAAAGAAAAAACG	NA	False	NA	NA	False	AAGAAA	-2	NA	106107694	106119626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588
transcript_2543.nic	chr1	-	1603	12	ISM	ENSMUSG00000033364.14	ENSMUST00000191058.7	6011	20	-52	21863	-31	-21863	5prime_fragment	FALSE	canonical	3	147	junction_10	27.6103346323871	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTACTTAAGAAGGTTAA	NA	False	NA	NA	False	ATTAAA	-31	NA	74544996	74510523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
transcript_25430.known	chr11	-	3144	21	FSM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_7	76.5847732907789	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTCTGATAGTTTA	NA	False	NA	-14	True	AATAAA	-13	NA	106146905	106139967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
transcript_25452.nic	chr11	-	1884	15	ISM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	-42	1851	-42	16	5prime_fragment	FALSE	canonical	3	632	junction_1	63.9582532849773	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAGAAGGAGAAAATCC	NA	False	NA	NA	False	AATAAA	-1	NA	106146947	106141818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
transcript_2546.known	chr1	+	3268	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	1183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTTTGTTTTTAAAT	860	False	NA	38	True	AATAAA	-23	NA	74545216	74570001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
transcript_25462.nic	chr11	-	1488	12	ISM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	2	3289	2	945	5prime_fragment	FALSE	canonical	3	681	junction_6	58.7414843485511	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGAGGGGTCTGAGGAG	NA	False	NA	81	True	NA	NA	NA	106146903	106143256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
transcript_2547.known	chr1	+	2720	17	FSM	ENSMUSG00000026173.16	ENSMUST00000113747.8	2720	17	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	1.30952042748481	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTTGTATGGTCTG	NA	False	NA	NA	False	AATAGA	-15	NA	74582061	74605136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74582188_74587071_74587128_74587263_74587423_74588333_74588563_74590178_74590309_74591146_74591379_74593648_74593851_74595101_74595247_74596878_74597032_74599448_74599653_74601213_74601383_74601872_74601990_74602609_74602783_74603535_74603672_74604190_74604341_74604418_74604527_74604905
transcript_25473.known	chr11	+	1316	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	1320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
transcript_25477.known	chr11	+	1394	10	FSM	ENSMUSG00000020708.13	ENSMUST00000133131.2	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	179.113523556954	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153518_106153622_106153710_106153834
transcript_25497.known	chr11	-	2747	13	FSM	ENSMUSG00000078619.11	ENSMUST00000021052.16	2747	13	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_5	34.2842488939487	3087	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCAGACCTGGTCATTGA	NA	False	NA	-7	True	AATAAA	-20	NA	106163798	106154004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106154946_106155020_106155123_106155258_106155382_106155497_106155634_106155765_106155864_106156008_106156171_106156485_106156588_106156713_106156810_106157362_106157519_106157716_106157840_106157963_106158007_106158159_106158345_106163318
transcript_25501.known	chr11	-	1195	6	FSM	ENSMUSG00000040592.12	ENSMUST00000167143.2	1195	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	7.4027022093287	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATCTTCGTGATATCAT	5089	False	NA	-3	True	AATAAA	-17	NA	106205355	106202169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486_106204538_106205243
transcript_25502.nic	chr11	-	1106	5	ISM	ENSMUSG00000040592.12	ENSMUST00000167143.2	1195	6	795	0	795	0	3prime_fragment	FALSE	canonical	3	38	junction_4	7.56637297521078	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATCTTCGTGATATCAT	5884	False	NA	-3	True	AATAAA	-17	NA	106204560	106202169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486
transcript_25504.known	chr11	-	1957	11	FSM	ENSMUSG00000020715.10	ENSMUST00000106801.8	1957	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_8	5.58927544499285	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGATAGTCATGGTCAAAG	9449	False	NA	NA	False	AATACA	-16	NA	106378662	106304591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106305296_106309649_106309816_106310844_106310924_106312531_106312794_106314212_106314315_106317638_106317762_106319839_106319913_106325740_106325814_106327915_106327950_106349733_106349855_106378442
transcript_25509.nnic	chr11	-	4823	12	NNC	ENSMUSG00000040548.17	novel	4934	12	NA	NA	-58	57	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	44.3034241163113	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGTACTGCTTTAATT	3273	False	NA	-1	True	ATTAAA	-27	NA	106503814	106393161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503663
transcript_25510.known	chr11	-	4934	12	FSM	ENSMUSG00000040548.17	ENSMUST00000042780.14	4934	12	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_11	20.6061051692923	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCAGACAAGCATGTT	3331	False	NA	NA	False	AATAAA	-11	NA	106503756	106392972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503683
transcript_25520.nic	chr11	-	3238	10	ISM	ENSMUSG00000040548.17	ENSMUST00000042780.14	4934	12	-131	9889	-131	-9643	5prime_fragment	FALSE	canonical	3	112	junction_9	21.4602704986807	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACAGAGACAGAATTCAT	3200	False	NA	NA	False	NA	NA	NA	106503887	106402861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503683
transcript_25527.nnic	chr11	-	3374	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9091	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_16	423.912869695826	175	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	333	False	NA	-10	True	AATAAA	-18	NA	106615311	106545043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
transcript_25528.nnic	chr11	-	3346	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9091	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_16	418.075950037789	337	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	333	False	NA	-10	True	AATAAA	-18	NA	106615311	106545043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_2553.known	chr1	-	7473	9	FSM	ENSMUSG00000026135.18	ENSMUST00000113737.8	7473	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_7	16.2307578381294	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTGCTATAATCCTTTA	NA	False	NA	NA	False	AATAAA	-13	NA	74627187	74604285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74618778_74624542_74624857_74626722
transcript_25556.nnic	chr11	-	3351	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9091	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_15	368.337888357959	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	333	False	NA	-10	True	AATAAA	-18	NA	106615311	106545043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
transcript_25557.nnic	chr11	-	3323	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9091	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_15	360.626097533473	324	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	333	False	NA	-10	True	AATAAA	-18	NA	106615311	106545043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_25570.nnic	chr11	-	3295	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9091	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_14	378.799506766483	230	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	333	False	NA	-9	True	AATAAA	-19	NA	106615311	106545042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
transcript_25571.nnic	chr11	-	3267	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9091	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_14	370.599266494863	335	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	333	False	NA	-9	True	AATAAA	-19	NA	106615311	106545042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_25583.nnic	chr11	-	3269	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9091	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_3	456.395913206765	137	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	333	False	NA	-10	True	AATAAA	-18	NA	106615311	106545043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_25601.nnic	chr11	-	3213	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9091	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_2	473.471167808096	133	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	333	False	NA	-9	True	AATAAA	-19	NA	106615311	106545042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_2561.known	chr1	+	1488	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113733.10	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	21.8136822818587	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTTGTGCCTTTCCTC	1131	False	NA	4	True	CATAAA	-16	NA	74627447	74631283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74627553_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
transcript_2564.known	chr1	+	1890	8	FSM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	42.4562199476696	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCTGCCTTCTGA	1142	False	NA	NA	False	NA	NA	NA	74627458	74631602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
transcript_25648.known	chr11	-	3283	15	FSM	ENSMUSG00000020717.20	ENSMUST00000080853.11	3283	15	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	284.128393297029	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	9559	False	NA	-10	True	AATAAA	-18	NA	106606085	106545043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844
transcript_25650.known	chr11	-	1506	8	FSM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	14.9652659072089	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4319	False	NA	NA	False	AATAAA	-33	NA	106670341	106659078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669784
transcript_25651.nic	chr11	-	1404	8	NIC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	16.8001457719623	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4296	False	NA	NA	False	AATAAA	-33	NA	106670364	106659078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
transcript_25654.known	chr11	-	1770	8	FSM	ENSMUSG00000020718.13	ENSMUST00000127061.8	1770	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	17.739613230029	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4297	False	NA	NA	False	AATAAA	-33	NA	106670363	106659078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669542
transcript_25655.known	chr11	-	2728	7	FSM	ENSMUSG00000020718.13	ENSMUST00000134029.8	2728	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	17.5538852932588	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTGATTTTTAAAAATTA	4361	False	NA	NA	False	AATAAA	-23	NA	106670299	106661869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
transcript_25659.nic	chr11	-	2546	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_13	1103.10076146326	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9197	False	NA	-9	True	AATAAA	-45	NA	106679777	106672373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524
transcript_25661.nic	chr11	-	2555	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-92	0	combination_of_known_junctions	FALSE	canonical	3	497	junction_13	995.534526816042	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	8871	False	NA	-9	True	AATAAA	-45	NA	106680103	106672373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
transcript_25667.known	chr11	-	3559	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	1242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9616	False	NA	-8	True	AATAAA	-18	NA	106679358	106671180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
transcript_25675.known	chr11	-	3593	12	FSM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_7	165.368159266449	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9654	False	NA	-9	True	AATAAA	-45	NA	106679320	106672373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
transcript_25694.known	chr11	+	2696	20	FSM	ENSMUSG00000018372.14	ENSMUST00000018516.11	2696	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	15.3330523078346	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTACTGCTTTTGAAT	5119	False	NA	10	True	AATAAA	-12	NA	106680100	106709679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818_106695948_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106704689_106705429_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
transcript_2570.known	chr1	-	1451	10	FSM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	27.6463557752974	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGCCTATGTGGTATGA	NA	False	NA	NA	False	AATAAA	-25	NA	74640536	74632911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
transcript_25702.nic	chr11	-	1956	11	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_10	946.562882221778	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9743	False	NA	NA	False	AATAAA	-27	NA	106890290	106879454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888141_106890184
transcript_25704.known	chr11	-	2054	11	FSM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	2002	junction_5	417.039386629129	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9666	False	NA	NA	False	AATAAA	-27	NA	106890367	106879454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
transcript_25707.known	chr11	-	1843	10	FSM	ENSMUSG00000018362.15	ENSMUST00000145331.8	1843	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1279.26507644134	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9767	False	NA	NA	False	AATAAA	-27	NA	106890266	106879454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106887334_106887473_106888063_106888141_106890184
transcript_25716.known	chr11	-	541	3	FSM	ENSMUSG00000018362.15	ENSMUST00000106768.2	541	3	0	0	0	0	multi-exon	FALSE	canonical	3	2432	junction_2	347.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATATAGTTCCTGGT	9838	False	NA	NA	False	NA	NA	NA	106890195	106887040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106887473_106888063_106888162_106890184
transcript_25717.known	chr11	+	1677	5	FSM	ENSMUSG00000078607.7	ENSMUST00000140447.4	1677	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAGCACCTGGCTTTGCT	NA	False	NA	NA	False	AGTAAA	-16	NA	106916506	106921264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_106916580_106916696_106916796_106918635_106919095_106919191_106919384_106920410
transcript_25719.nnic	chr11	-	2638	10	NNC	ENSMUSG00000040481.18	novel	12036	30	NA	NA	-27	-18038	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	8.49109918868569	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAGGAGGAGGAGACAAT	NA	False	NA	27	True	AAAAAG	-27	NA	107022980	106969411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_106969476_106971548_106971681_106972041_106972398_106973338_106973527_106985827_106986017_106986541_106986752_106990391_106990616_107001638_107002462_107022099_107022391_107022819
transcript_25722.known	chr11	-	11488	28	FSM	ENSMUSG00000040481.18	ENSMUST00000057892.15	11488	28	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_24	20.9549781940023	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTGTCAGGTCAGATC	NA	False	NA	-6	True	AATAAA	-22	NA	107022748	106923906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106937825_106938170_106943614_106943841_106944048_106944132_106945281_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508_106965817_106967347_106967528_106968485_106968625_106969345_106969476_106971548_106971681_106972041_106972398_106973338_106973527_106986541_106986752_106990391_106990616_107001638_107002462_107022099
transcript_25727.known	chr11	-	3098	18	FSM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	109.451004980994	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1101	False	NA	NA	False	TATAAA	-12	NA	107080207	107057488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_25729.known	chr11	-	3158	18	FSM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_14	59.6645176908376	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1101	False	NA	NA	False	TATAAA	-12	NA	107080207	107057488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_25757.nic	chr11	-	679	6	ISM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	48	15137	19	-3264	5prime_fragment	FALSE	canonical	3	283	junction_2	76.478493709016	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTAAACCAAATTTTAC	1149	False	NA	NA	False	AATACA	-27	NA	107080159	107072625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_25758.known	chr11	-	6329	10	FSM	ENSMUSG00000040430.19	ENSMUST00000103064.10	6329	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	23.9495354216649	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGAGTGTAGCATCCTCT	NA	False	NA	-1	True	AATAAA	-17	NA	107361525	107098717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_107103485_107107503_107107623_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107211618_107211627_107212412_107212502_107228237_107228387_107360716
transcript_2576.nic	chr1	+	2715	8	ISM	ENSMUSG00000033276.19	ENSMUST00000123154.2	3016	11	1383	0	1383	0	3prime_fragment	FALSE	canonical	2	5	junction_2	4.82341229032404	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTGTGATTATCTGTA	742	False	NA	NA	False	ATTAAA	-18	NA	74667006	74676053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_74667141_74667300_74667412_74670744_74670820_74671887_74672060_74672300_74672449_74672665_74672814_74673168_74673916_74674873
transcript_25761.nic	chr11	-	2546	9	NIC	ENSMUSG00000040430.19	novel	6329	10	NA	NA	-118	-3782	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	27.9952562945939	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTCAGGTGTCACATGC	NA	False	NA	NA	False	NA	NA	NA	107361643	107102499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_107103485_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107211618_107211627_107212412_107212502_107228237_107228387_107360716
transcript_25762.nic	chr11	-	2060	9	NIC	ENSMUSG00000040430.19	novel	6329	10	NA	NA	-51	-4201	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	27.9952562945939	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGAAAGGAAACAAAACAGGA	NA	False	NA	NA	False	NA	NA	NA	107361576	107102918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_107103485_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107211618_107211627_107212412_107212502_107228237_107228387_107360716
transcript_25766.known	chr11	+	1904	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGCGTGGAGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	107370309	107388999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
transcript_25769.known	chr11	+	1955	11	FSM	ENSMUSG00000020720.14	ENSMUST00000106752.10	1955	11	0	0	0	0	multi-exon	FALSE	canonical	2	44	junction_10	842.895657836722	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGGTTCCAGACCTGAG	NA	False	NA	NA	False	ATTAAA	-16	NA	107370353	107395188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107394443
transcript_25777.nic	chr11	+	768	6	ISM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	-50	6278	-50	-5838	5prime_fragment	FALSE	canonical	3	2673	junction_3	132.437154907526	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATACCAAATTCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	107370259	107382721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606
transcript_25783.known	chr11	+	13147	33	FSM	ENSMUSG00000020721.17	ENSMUST00000106746.8	13147	33	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	34.694973856994	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGAGTGTTTCTTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	107438793	107584652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_107438808_107440171_107440228_107446344_107446402_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
transcript_25786.nnic	chr11	+	6413	32	NNC	ENSMUSG00000020721.17	novel	3753	14	NA	NA	-1098	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	36.7501052969107	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	9320	False	NA	9	True	AATAAA	-17	NA	107437657	107577769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_107437878_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
transcript_25790.known	chr11	+	6218	32	FSM	ENSMUSG00000020721.17	ENSMUST00000075012.8	6218	32	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_15	38.7019615966116	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGTTACATATGTTTG	NA	False	NA	9	True	AATAAA	-17	NA	107438785	107577769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_107438808_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518175_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
transcript_2580.known	chr1	+	10019	20	FSM	ENSMUSG00000033257.15	ENSMUST00000042125.15	10019	20	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_15	14.6750584571313	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTTTATGTATTCCAA	NA	False	NA	NA	False	NA	NA	NA	74700903	74742889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74701049_74712002_74712170_74718056_74719623_74720458_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
transcript_25801.nnic	chr11	+	1986	13	NNC	ENSMUSG00000020721.17	novel	687	5	NA	NA	-1098	-26850	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	42.6708982276628	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTATGTATTTTTAAGGAT	9320	False	NA	NA	False	AAGAAA	-9	NA	107437657	107510070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_107437878_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808
transcript_25807.known	chr11	+	687	5	FSM	ENSMUSG00000020721.17	ENSMUST00000141730.8	687	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	30.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAGCATTTAGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	107438755	107468982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_107438808_107440171_107440228_107446344_107446402_107465763_107465992_107468688
transcript_25810.known	chr11	-	3705	6	FSM	ENSMUSG00000040373.13	ENSMUST00000039071.3	3705	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.72046505340853	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGTCTTTCCTTGGAC	NA	False	NA	NA	False	TATAAA	-18	NA	107805881	107765496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_107768436_107768720_107768867_107772422_107772564_107773714_107773802_107775171_107775408_107805725
transcript_25812.known	chr11	-	8409	17	FSM	ENSMUSG00000050965.15	ENSMUST00000059595.11	8409	17	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_8	3.24458683810435	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGGCTGTCATTTGCA	6284	False	NA	NA	False	AATAAA	-19	NA	108234754	107824212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_107830507_107842291_107842433_107844467_107844576_107852398_107852480_107869059_107869199_107870028_107870092_107872436_107872529_107874710_107874885_107877073_107877212_107903452_107903550_107903770_107903906_107905050_107905208_107944800_107944930_107948587_107948700_108082955_108083039_108231471_108231504_108234320
transcript_25814.known	chr11	+	3453	27	FSM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_14	12.2793543958426	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTTCTTTTTACATT	NA	False	NA	NA	False	ATTAAA	-18	NA	108316017	108751441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108399047_108399192_108409504_108409660_108409955_108410086_108410721_108410815_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
transcript_25818.nic	chr11	+	844	6	ISM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	54	388430	-20	-608	5prime_fragment	FALSE	canonical	3	43	junction_4	6.34350061086148	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTATTAAACGTTTATTA	NA	False	NA	NA	False	ATTAAA	-21	NA	108316071	108363011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842
transcript_25820.known	chr11	+	4260	11	FSM	ENSMUSG00000000142.16	ENSMUST00000052915.14	4260	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	12.1720992437624	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCTCATCTTTGGAT	NA	False	NA	7	True	ATTAAA	-19	NA	108811174	108841609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_108811388_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
transcript_25822.nic	chr11	+	3151	11	NIC	ENSMUSG00000000142.16	novel	2551	9	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	5.20096144957834	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAACCAATTAAGAAGACA	NA	False	NA	NA	False	NA	NA	NA	108811643	108840337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_108812020_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
transcript_25823.nic	chr11	+	4423	11	NIC	ENSMUSG00000000142.16	novel	2551	9	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	5.20096144957834	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCTCATCTTTGGAT	NA	False	NA	7	True	ATTAAA	-19	NA	108811643	108841609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_108812020_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
transcript_25830.known	chr11	+	826	2	FSM	ENSMUSG00000000142.16	ENSMUST00000140821.2	826	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGGGAGAAATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	108811625	108814409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_108812020_108813977
transcript_25832.nnic	chr11	-	1792	11	NNC	ENSMUSG00000020599.14	novel	3464	10	NA	NA	8481	-1551	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.0776981498753	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTGTGTCTTTATTA	NA	False	NA	NA	False	NA	NA	NA	109180411	109148378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_109148571_109148676_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
transcript_25834.known	chr11	+	6160	4	FSM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_2	46.1976430375211	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTAGCACGACGTTATT	NA	False	NA	12	True	AATAAA	-14	NA	109253656	109292195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_109254083_109256361_109256589_109283171_109283223_109286739
transcript_25836.known	chr11	+	914	3	FSM	ENSMUSG00000020611.15	ENSMUST00000106702.4	914	3	0	0	0	0	multi-exon	TRUE	canonical	3	100	junction_2	132.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTATGTCCTCTTTTGCA	NA	False	NA	9	True	AATAAA	-18	NA	109253656	109271301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_109254083_109256361_109256589_109271040
transcript_25844.known	chr11	+	2816	9	FSM	ENSMUSG00000020610.18	ENSMUST00000092500.11	2816	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	26.8953411393126	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCATTTCGCGTTCT	NA	False	NA	6	True	ATTAAA	-19	NA	109316771	109328974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
transcript_25849.known	chr11	+	1832	8	FSM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	12.4638252063927	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGGCCCTAGGAAT	NA	False	NA	19	True	AATAAA	-15	NA	109317051	109327815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
transcript_25851.known	chr11	+	1846	6	FSM	ENSMUSG00000020610.18	ENSMUST00000125108.2	1846	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	32.499846153482	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAGAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	109316807	109321871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749
transcript_25853.known	chr11	-	2354	6	FSM	ENSMUSG00000041920.15	ENSMUST00000070872.13	2354	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	8.5463442476886	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCCAAAAAACAAAAAAAAC	2874	False	NA	NA	False	NA	NA	NA	109364120	109343551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109363763
transcript_25854.known	chr11	-	4219	6	FSM	ENSMUSG00000041920.15	ENSMUST00000070152.12	4219	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	13.6440463206484	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTGATGTTCTTCTGTA	2570	False	NA	-1	True	AATAAA	-21	NA	109364424	109341680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109364073
transcript_25855.nnic	chr11	-	2418	6	NNC	ENSMUSG00000041920.15	novel	2354	6	NA	NA	-1658	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	8.20731381147328	160	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCCAAAAAACAAAAAAAAC	912	False	NA	NA	False	NA	NA	NA	109366082	109343551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109365661
transcript_2586.known	chr1	+	2071	4	FSM	ENSMUSG00000033227.8	ENSMUST00000006716.8	2071	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.49443825784929	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGTGAGGAACCCCTG	NA	False	NA	NA	False	ATTAAA	-32	NA	74811050	74824481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74811382_74821260_74821482_74821718_74822054_74823297
transcript_25860.known	chr11	-	2050	13	FSM	ENSMUSG00000041895.16	ENSMUST00000103060.10	2050	13	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_5	23.2491039253846	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAGTTGTTTACATTT	NA	False	NA	-6	True	AATAAA	-15	NA	109502258	109464156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
transcript_25863.known	chr11	-	3338	12	FSM	ENSMUSG00000041895.16	ENSMUST00000047186.10	3338	12	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_4	24.2817484087354	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109502258	109465957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
transcript_25868.nic	chr11	-	1269	11	ISM	ENSMUSG00000041895.16	ENSMUST00000047186.10	3338	12	-37	2523	-37	-2523	5prime_fragment	FALSE	canonical	1	33	junction_3	25.2841847802139	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTCAGACCTTCCTTAC	NA	False	NA	NA	False	AAGAAA	-2	NA	109502295	109468480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
transcript_25870.known	chr11	-	1220	8	FSM	ENSMUSG00000041895.16	ENSMUST00000106689.2	1220	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	3.73619909446343	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTCGAGCTTCACGGGG	NA	False	NA	NA	False	ATTAAA	-20	NA	109502258	109472897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
transcript_25871.known	chr11	+	3513	12	FSM	ENSMUSG00000020612.17	ENSMUST00000106677.8	3513	12	0	0	0	0	multi-exon	TRUE	canonical	3	3	junction_1	598.701238977939	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAATCAGTTTTTCTTC	NA	False	NA	20	True	AATAAA	-25	NA	109540230	109560482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_109540354_109541266_109541451_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
transcript_25872.known	chr11	+	3359	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	0	0	0	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAATCAGTTTTTCTTC	NA	False	NA	20	True	AATAAA	-25	NA	109541746	109560482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
transcript_25886.known	chr11	-	8231	39	FSM	ENSMUSG00000018800.15	ENSMUST00000043961.12	8231	39	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_11	4.33987183389395	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGACTTCAGTTTGTAT	NA	False	NA	NA	False	AATAAA	-21	NA	110228504	110160194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_110163393_110164151_110164208_110165145_110165226_110166089_110166240_110167279_110167400_110168213_110168309_110168387_110168464_110168996_110169173_110169934_110170027_110170117_110170236_110170451_110170579_110176519_110176612_110177589_110177665_110178407_110178543_110178888_110179003_110180616_110180788_110182911_110183026_110184065_110184204_110184612_110184741_110187293_110187464_110188861_110189064_110190716_110190837_110192238_110192379_110192556_110192648_110193818_110193958_110194918_110195039_110195675_110195852_110197070_110197182_110200215_110200275_110200962_110201132_110202136_110202285_110204154_110204344_110205349_110205492_110208527_110208758_110210619_110210709_110217385_110217548_110218557_110218763_110219962_110220083_110228310
transcript_25890.known	chr11	+	1869	12	FSM	ENSMUSG00000020623.12	ENSMUST00000146084.8	1869	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	29.7790763528648	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110290084	110404467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381640_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
transcript_25891.known	chr11	+	2068	12	FSM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	8.31308835611224	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110289947	110404467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
transcript_25892.known	chr11	+	4135	3	FSM	ENSMUSG00000000567.6	ENSMUST00000000579.3	4135	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGACTTATTCACTCTG	NA	False	NA	NA	False	AATAAA	-29	NA	112673049	112678586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_112673842_112674634_112674889_112675497
transcript_25893.known	chr11	-	1861	3	FSM	ENSMUSG00000087259.8	ENSMUST00000127263.8	1861	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	2	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTTGTCTTTTCTAAA	NA	False	NA	NA	False	TATAAA	-23	NA	113092664	112934720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_112935987_112958167_112958213_113092114
transcript_25894.known	chr11	-	1802	2	FSM	ENSMUSG00000087259.8	ENSMUST00000145206.2	1802	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTTGTCTTTTCTAAA	NA	False	NA	NA	False	TATAAA	-23	NA	113092648	112934720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_112935989_113092114
transcript_259.nic	chr1	-	532	4	ISM	ENSMUSG00000033845.14	ENSMUST00000156816.7	4203	5	-19	4413	-19	-1247	5prime_fragment	FALSE	canonical	3	2115	junction_1	94.2667609617633	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATATTGAAGTGCAGCTG	1601	False	NA	NA	False	NA	NA	NA	4855981	4847846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_4847872_4852790_4852957_4854173_4854329_4855795
transcript_2590.known	chr1	+	920	2	FSM	ENSMUSG00000033227.8	ENSMUST00000189544.2	920	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGCCTGCCTCGGAACTG	4527	False	NA	NA	False	NA	NA	NA	74821597	74823761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_74822054_74823297
transcript_25904.known	chr11	-	2781	11	FSM	ENSMUSG00000041654.16	ENSMUST00000042657.16	2781	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	190.932474974793	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7757	False	NA	-2	True	AATAAA	-19	NA	113456594	113135678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113413726_113413832_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_2591.known	chr1	-	720	5	FSM	ENSMUSG00000006546.4	ENSMUST00000006721.3	720	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCCCTCTTGCCTCTTT	3279	False	NA	NA	False	AATAAA	-15	NA	74932302	74929092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_74929296_74929689_74929833_74931104_74931247_74931885_74932051_74932235
transcript_25910.nic	chr11	-	2808	10	NIC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	188.939601035638	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7736	False	NA	-2	True	AATAAA	-19	NA	113456615	113135678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456411
transcript_25911.known	chr11	-	2688	10	FSM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	154.822558728882	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7766	False	NA	-2	True	AATAAA	-19	NA	113456585	113135678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_25917.nic	chr11	-	2787	10	NIC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_9	159.75845965738	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7736	False	NA	-2	True	AATAAA	-19	NA	113456615	113135678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456411
transcript_25918.known	chr11	-	2664	10	FSM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	113.78341999899	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7769	False	NA	-2	True	AATAAA	-19	NA	113456582	113135678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_25935.known	chr11	-	654	5	FSM	ENSMUSG00000041654.16	ENSMUST00000149034.8	654	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	185.555079423873	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAAGCTTGCTGCTGCTG	7746	False	NA	NA	False	NA	NA	NA	113456605	113354778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456411
transcript_25936.known	chr11	+	2143	2	FSM	ENSMUSG00000047904.7	ENSMUST00000146390.3	2143	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAAGTAAGGTGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	113510167	113516854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_113510449_113514992
transcript_25946.known	chr11	+	3935	14	FSM	ENSMUSG00000018661.18	ENSMUST00000018805.15	3935	14	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_2	35.2900073021332	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCATTTTTAAGAGGCTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	113539994	113553773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_113540702_113542670_113542913_113543050_113543233_113543367_113543539_113544729_113544887_113545793_113546005_113546685_113547475_113547828_113547976_113548200_113548363_113549304_113549433_113550094_113550204_113551768_113551879_113551965_113552045_113553032
transcript_2595.nnic	chr1	-	1346	8	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-50	-212	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	8.89622712968015	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGAGGTTACCTGTGAT	NA	False	NA	-5	True	AATAAA	-20	NA	75101894	75006509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097397_75101779
transcript_2596.known	chr1	-	1586	8	FSM	ENSMUSG00000026162.9	ENSMUST00000152855.3	1586	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	8.89622712968015	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTGCTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	75101844	75006297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75101779
transcript_25971.known	chr11	+	1476	8	FSM	ENSMUSG00000018661.18	ENSMUST00000063776.14	1476	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	102.010403631098	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGGTGCCTCTGCTCCTG	NA	False	NA	13	True	AATAAA	-21	NA	113540153	113553225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_113540702_113547828_113547976_113548200_113548363_113549304_113549433_113550094_113550204_113551768_113551879_113551965_113552045_113553032
transcript_25974.known	chr11	-	2619	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	0	0	0	0	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCCTAATTGGTTGGTT	NA	False	NA	-8	True	ATTAAA	-24	NA	113574981	113552144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113554370_113568129_113568230_113574687
transcript_25981.known	chr11	+	2062	5	FSM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	30.335622624235	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575272	113585473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_113575538_113578599_113580048_113582554_113582660_113583220_113583329_113585337
transcript_25985.nic	chr11	+	3649	5	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	-992	0	intron_retention	TRUE	canonical	3	43	junction_1	113.778293184597	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113574245	113585473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_113576098_113578599_113580048_113582554_113582660_113583220_113583329_113585337
transcript_25986.known	chr11	+	2196	5	FSM	ENSMUSG00000041623.18	ENSMUST00000042227.15	2196	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	114.630929508575	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575237	113585473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_113575637_113578599_113580048_113582554_113582660_113583220_113583329_113585337
transcript_25987.nnic	chr11	+	1992	4	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_2	111.645271582216	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575237	113585473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_113575538_113578599_113580048_113583220_113583329_113585337
transcript_25996.nic	chr11	-	1282	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-135	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	63.2926471533105	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600487	113588997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_113589493_113590661_113590740_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
transcript_26.known	ERCC-00074	+	506	1	FSM	ERCC-00074A	DQ516754	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13687	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00074_+_0_500
transcript_260.known	chr1	-	1569	4	FSM	ENSMUSG00000033845.14	ENSMUST00000146665.3	1569	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	1077.56031024821	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATATAAGAGTTTTGTC	1620	False	NA	NA	False	TTTAAA	-22	NA	4855962	4851443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_4852525_4852790_4852957_4854173_4854329_4855795
transcript_26001.known	chr11	-	1375	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600352	113588997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
transcript_26002.known	chr11	-	1213	8	FSM	ENSMUSG00000018727.20	ENSMUST00000173655.8	1213	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	68.8879599088851	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600346	113588997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600212
transcript_26005.nic	chr11	-	1379	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-107	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_7	55.2692851188707	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600950	113588997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600647
transcript_26014.nic	chr11	-	1446	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-111	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	74.0855361502275	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600463	113588997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
transcript_26015.nic	chr11	-	1334	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-158	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	66.4646940529749	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600510	113588997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
transcript_26018.known	chr11	-	1235	7	FSM	ENSMUSG00000018727.20	ENSMUST00000018871.8	1235	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	88.6372131531422	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600843	113588997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113589493_113590661_113590809_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600647
transcript_2602.known	chr1	-	2429	10	FSM	ENSMUSG00000033159.15	ENSMUST00000041213.12	2429	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	47.8820567438857	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	9308	False	NA	-16	True	AATAAA	-14	NA	75119341	75112414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701_75119205_75119286
transcript_26027.known	chr11	-	997	4	FSM	ENSMUSG00000018727.20	ENSMUST00000151396.2	997	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	55.7195357721748	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATCGAACCACATGTCCA	NA	False	NA	NA	False	NA	NA	NA	113600350	113593537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113594193_113597242_113597396_113599629_113599681_113600212
transcript_26032.known	chr11	-	1123	7	FSM	ENSMUSG00000018727.20	ENSMUST00000106617.8	1123	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	84.0094240745247	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113599793	113588997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113589493_113590661_113590740_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629
transcript_26034.known	chr11	-	3405	2	FSM	ENSMUSG00000041598.8	ENSMUST00000106616.2	3405	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTGTCTGACTCTTCTT	7926	False	NA	0	True	ATTAAA	-17	NA	113642144	113617675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113620492_113641555
transcript_26035.known	chr11	-	562	2	FSM	ENSMUSG00000041598.8	ENSMUST00000153453.2	562	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTCCGTGACCAGAGGG	8090	False	NA	NA	False	NA	NA	NA	113641980	113620130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113620492_113641779
transcript_26036.known	chr11	-	3008	2	FSM	ENSMUSG00000041598.8	ENSMUST00000053536.5	3008	2	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	0	883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTCTGACTCTTC	7363	False	NA	-2	True	ATTAAA	-15	NA	113642707	113617677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_113620492_113642513
transcript_26038.known	chr11	+	364	5	FSM	ENSMUSG00000057322.13	ENSMUST00000077915.10	364	5	0	0	0	0	multi-exon	FALSE	canonical	3	5140	junction_1	6068.87239835375	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559373	114563157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_114559453_114559606_114559641_114559731_114559793_114562559_114562683_114563090
transcript_26039.known	chr11	+	345	5	FSM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_1	7543.63564122102	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559451	114563157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559_114562683_114563090
transcript_2604.known	chr1	-	3669	9	FSM	ENSMUSG00000033159.15	ENSMUST00000168720.8	3669	9	0	0	0	0	multi-exon	TRUE	canonical	3	100	junction_8	23.1405353222435	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTTTCCAGAAGTTCA	9367	False	NA	NA	False	AATAAA	-13	NA	75119282	75111197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701
transcript_26042.known	chr11	+	371	5	FSM	ENSMUSG00000057322.13	ENSMUST00000106602.10	371	5	0	0	0	0	multi-exon	FALSE	canonical	3	6598	junction_1	5536.08152825625	1145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559349	114563157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_114559436_114559606_114559641_114559731_114559793_114562559_114562683_114563090
transcript_26043.known	chr11	+	457	4	FSM	ENSMUSG00000057322.13	ENSMUST00000106599.8	457	4	0	0	0	0	multi-exon	FALSE	canonical	3	12129	junction_3	3589.14031799012	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559434	114563157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_114559641_114559731_114559793_114562559_114562683_114563090
transcript_26045.known	chr11	+	3486	14	FSM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_11	15.0937896237857	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGCAGCTGAGTCACTT	NA	False	NA	11	True	AATAAA	-14	NA	114566256	114611803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636_114601823_114602585_114602665_114609954
transcript_26051.known	chr11	+	695	3	FSM	ENSMUSG00000034714.10	ENSMUST00000141111.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	12.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTACCCATCCCTGAAG	NA	False	NA	NA	False	NA	NA	NA	114566341	114581429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_114566499_114577219_114577393_114581064
transcript_26054.known	chr11	+	2247	8	FSM	ENSMUSG00000034706.17	ENSMUST00000144872.2	2247	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.87139303460597	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGAATCTCTCATCTCT	NA	False	NA	NA	False	NA	NA	NA	114627866	114644895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_114628021_114629441_114629585_114631242_114631357_114635126_114635267_114635880_114636004_114641163_114641388_114642611_114642748_114643682
transcript_26056.known	chr11	+	3667	5	FSM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	7.21110255092798	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTGTGTTTCTAAGTGA	928	False	NA	NA	False	ATTAAA	-38	NA	114742667	114763443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321_114759472_114761146
transcript_26064.nic	chr11	+	2534	4	ISM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	-714	3522	-24	0	5prime_fragment	FALSE	canonical	3	20	junction_1	8.2192186706253	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTTGCTTTGGGCTTGT	214	False	NA	NA	False	AATAAA	-18	NA	114741953	114759921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321
transcript_26065.nic	chr11	+	1885	4	NIC	ENSMUSG00000051043.17	novel	2200	4	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	15.4344492037203	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTTGCTTTGGGCTTGT	963	False	NA	NA	False	AATAAA	-18	NA	114742702	114759921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_114742813_114754292_114755373_114757450_114757546_114759321
transcript_26066.known	chr11	+	2200	4	FSM	ENSMUSG00000051043.17	ENSMUST00000021071.14	2200	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	13.5973853695808	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGCTTTGGGCTTGTG	936	False	NA	NA	False	AATAAA	-19	NA	114742675	114759922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_114743100_114754292_114755373_114757450_114757546_114759321
transcript_26067.known	chr11	+	2210	9	FSM	ENSMUSG00000020732.14	ENSMUST00000021076.6	2210	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	1.36358901432946	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACCGGTTTTTCCCCC	NA	False	NA	NA	False	ATTAAA	-23	NA	115044982	115053062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115045118_115047752_115047864_115048776_115048819_115049330_115049398_115049484_115049538_115050501_115050568_115051124_115051182_115051263_115051341_115051460
transcript_26068.known	chr11	+	1925	6	FSM	ENSMUSG00000020733.4	ENSMUST00000021077.4	1925	6	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	12.6964561984831	438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCTGTGTCCTCCTTT	NA	False	NA	10	True	NA	NA	NA	115054166	115072007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115054778_115067176_115067339_115068049_115068204_115069875_115069917_115070832_115070923_115071140
transcript_26074.nnic	chr11	+	3219	11	NNC	ENSMUSG00000045980.14	novel	4564	10	NA	NA	-34	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	14.0032139168121	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTCCCTCTTGCTTAAG	NA	False	NA	NA	False	ATTAAA	-15	NA	115078278	115136592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_115078425_115079035_115079149_115088061_115088184_115091645_115091728_115092141_115092239_115092957_115093039_115095887_115095988_115096300_115096410_115119246_115119341_115134195_115135637_115135758
transcript_26075.nnic	chr11	+	4477	11	NNC	ENSMUSG00000045980.14	novel	4564	10	NA	NA	-34	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	14.0032139168121	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGTCTCCTCTGTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	115078278	115137850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_115078425_115079035_115079149_115088061_115088184_115091645_115091728_115092141_115092239_115092957_115093039_115095887_115095988_115096300_115096410_115119246_115119341_115134195_115135637_115135758
transcript_26077.known	chr11	+	4561	10	FSM	ENSMUSG00000045980.14	ENSMUST00000100235.9	4561	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	13.7661241037376	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGTTGTCTCCTCTGTCAT	NA	False	NA	NA	False	AATAAA	-14	NA	115078312	115137849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115078425_115079035_115079149_115088061_115088184_115091645_115091728_115092141_115092239_115092957_115093039_115095887_115095988_115096303_115096410_115119246_115119341_115134195
transcript_2608.known	chr1	+	2438	10	FSM	ENSMUSG00000049339.17	ENSMUST00000190240.7	2438	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	31.2054126359159	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGCCTGTCTGCCTGCT	NA	False	NA	11	True	AATAAA	-18	NA	75119437	75124553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75119773_75120012_75120120_75120566_75120598_75120947_75121084_75121265_75121351_75121603_75121748_75121902_75121998_75122323_75122460_75123073_75123364_75123474
transcript_26083.known	chr11	+	3147	9	FSM	ENSMUSG00000045980.14	ENSMUST00000156230.2	3147	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	14.6116391962025	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTCTCCCTCTTGCTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	115078376	115136590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115078425_115079035_115079149_115088061_115088184_115091645_115091728_115092141_115092239_115092957_115093039_115095887_115095988_115096300_115096410_115134195
transcript_26086.known	chr11	-	1204	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103040.11	1204	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	40.7553677446297	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078216	115073657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077944
transcript_26094.known	chr11	+	369	3	FSM	ENSMUSG00000045980.14	ENSMUST00000135536.8	369	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTGGGGGCTGGGGACAG	NA	False	NA	NA	False	NA	NA	NA	115078336	115088229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115078425_115079035_115079149_115088061
transcript_26095.known	chr11	-	386	3	FSM	ENSMUSG00000015542.18	ENSMUST00000134769.2	386	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	42.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCCACCCTCCCTTTCT	NA	False	NA	NA	False	NA	NA	NA	115078102	115075803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115075943_115077574_115077664_115077944
transcript_26101.known	chr11	-	1948	12	FSM	ENSMUSG00000018861.9	ENSMUST00000021078.3	1948	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_7	15.1766458254911	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	0	True	AATAAA	-17	NA	115167876	115158849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167634
transcript_26102.nnic	chr11	-	1818	12	NNC	ENSMUSG00000018861.9	novel	1948	12	NA	NA	-231	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_11	32.3513766360558	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	0	True	AATAAA	-17	NA	115168107	115158849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167995
transcript_2611.known	chr1	+	2561	9	FSM	ENSMUSG00000049339.17	ENSMUST00000097694.11	2561	9	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	8.45576726264388	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCTGCCTGCTTGTC	NA	False	NA	15	True	AATAAA	-22	NA	75119429	75124557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75119773_75120012_75120120_75120566_75120598_75120947_75121084_75121265_75121351_75121603_75121748_75121902_75121998_75122323_75122460_75123073
transcript_26116.known	chr11	-	4951	6	FSM	ENSMUSG00000044788.11	ENSMUST00000056153.8	4951	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.6	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGTATTGTCCCAATAAA	429	False	NA	NA	False	AATGAA	-1	NA	115188340	115170447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115174482_115175025_115175206_115176124_115176313_115176943_115177125_115187363_115187531_115188139
transcript_26119.known	chr11	-	1890	2	FSM	ENSMUSG00000044788.11	ENSMUST00000141006.2	1890	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAGAATTCCCAGGAAC	280	False	NA	NA	False	NA	NA	NA	115188489	115185810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115187531_115188319
transcript_26120.known	chr11	-	3276	19	FSM	ENSMUSG00000034586.15	ENSMUST00000106542.9	3276	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_16	3.88928569404159	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTGTCTCTGTACAT	8660	False	NA	0	True	AATAAA	-15	NA	115258582	115238532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115239359_115239625_115239785_115239911_115240004_115240747_115240829_115241317_115241425_115241744_115241973_115243410_115243576_115245225_115245305_115245411_115245564_115245850_115245942_115246119_115246261_115247190_115247248_115247445_115247669_115249495_115249613_115249802_115249910_115250520_115250638_115251147_115251319_115252464_115252615_115258369
transcript_26127.known	chr11	+	3700	5	FSM	ENSMUSG00000050910.6	ENSMUST00000053288.6	3700	5	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_3	7.49583217528247	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAAGTGACCCTGGGTCT	NA	False	NA	12	True	AATAAA	-22	NA	115272741	115286958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115273228_115281336_115281450_115281688_115281838_115283484_115283650_115284171
transcript_2613.known	chr1	+	2477	9	FSM	ENSMUSG00000049339.17	ENSMUST00000188873.7	2477	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	35.7840746701658	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGCCTGTCTGCCTGCT	NA	False	NA	11	True	AATAAA	-18	NA	75119421	75124553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75119773_75120012_75120120_75120566_75120598_75121035_75121084_75121265_75121351_75121603_75121748_75121902_75121998_75122323_75122460_75123073
transcript_26133.known	chr11	+	2596	6	FSM	ENSMUSG00000018858.16	ENSMUST00000153983.8	2596	6	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	61.9825781974258	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTTTCACTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	115294577	115303500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
transcript_26134.known	chr11	+	749	6	FSM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	353.082766501	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294582	115301745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
transcript_26138.known	chr11	+	2522	5	FSM	ENSMUSG00000018858.16	ENSMUST00000106539.10	2522	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	428.298377302553	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTGTCGCCCTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	115294579	115303488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115294787_115297376_115297414_115300885_115300969_115301057_115301228_115301463
transcript_26144.known	chr11	+	468	4	FSM	ENSMUSG00000018858.16	ENSMUST00000135619.8	468	4	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	57.7831194111991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGGAGAGCTGGTACTTA	NA	False	NA	NA	False	CATAAA	-15	NA	115294607	115301077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885
transcript_26150.known	chr11	-	682	7	FSM	ENSMUSG00000034566.11	ENSMUST00000106537.8	682	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	1501.20529353361	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310743	115306514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310017_115310120_115310717
transcript_26152.known	chr11	-	659	6	FSM	ENSMUSG00000034566.11	ENSMUST00000073791.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	1301.70156333931	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309377_115310717
transcript_26154.known	chr11	-	625	6	FSM	ENSMUSG00000034566.11	ENSMUST00000043931.9	625	6	0	0	0	0	multi-exon	FALSE	canonical	3	1974	junction_5	551.930285452792	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717
transcript_26155.known	chr11	+	1764	6	FSM	ENSMUSG00000016940.19	ENSMUST00000103035.10	1764	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	5.67097875150313	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGTCTCTCCTTCAT	3736	False	NA	28	True	NA	NA	NA	115310953	115322100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115311333_115312808_115312918_115315309_115315402_115318258_115318355_115320105_115320232_115321138
transcript_26157.known	chr11	+	2649	5	FSM	ENSMUSG00000016940.19	ENSMUST00000106533.8	2649	5	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	5.97390157267426	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGTCTCTCCTTCAT	3758	False	NA	28	True	NA	NA	NA	115310975	115322100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115311333_115312808_115312918_115315309_115315402_115318258_115318355_115320105
transcript_26160.known	chr11	+	2062	2	FSM	ENSMUSG00000045775.16	ENSMUST00000106532.4	2062	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGCCTCTCTGTCTAA	NA	False	NA	NA	False	ATTAAA	-41	NA	115353299	115365224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115353634_115363496
transcript_26161.known	chr11	-	858	5	FSM	ENSMUSG00000020736.13	ENSMUST00000021082.7	858	5	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	11.1214882097676	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382688	115381245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
transcript_26163.known	chr11	-	836	5	FSM	ENSMUSG00000020736.13	ENSMUST00000106530.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	83.4487117935322	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382641	115381245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115381596_115381678_115381794_115381963_115382025_115382096_115382198_115382432
transcript_26166.known	chr11	+	1009	3	FSM	ENSMUSG00000057219.12	ENSMUST00000136985.8	1009	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	10	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAGATGCAAAGACCACA	NA	False	NA	NA	False	AAAACA	-30	NA	115366523	115374603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115366854_115366947_115367092_115374068
transcript_26167.known	chr11	+	2260	3	FSM	ENSMUSG00000057219.12	ENSMUST00000035240.7	2260	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	2.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTGTGTGCTAGTCTCC	NA	False	NA	NA	False	ATTAAA	-22	NA	115366492	115381293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115366854_115366947_115367092_115379538
transcript_26168.known	chr11	-	907	3	FSM	ENSMUSG00000020736.13	ENSMUST00000124778.8	907	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	15.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGGGGGATCATTGAGAG	NA	False	NA	NA	False	NA	NA	NA	115382677	115381463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115382025_115382096_115382198_115382432
transcript_26170.known	chr11	-	1375	5	FSM	ENSMUSG00000020737.13	ENSMUST00000021083.7	1375	5	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_2	125.475844288851	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCGTGTTTTGTCTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	115405213	115388178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
transcript_26172.known	chr11	-	597	5	FSM	ENSMUSG00000020737.13	ENSMUST00000145104.8	597	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	740.766663666772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCTGTCTGTCTGTTTG	NA	False	NA	-111	True	NA	NA	NA	115405174	115388956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115389126_115391491_115391550_115392830_115392929_115393857_115394001_115405045
transcript_26175.known	chr11	-	696	4	FSM	ENSMUSG00000020737.13	ENSMUST00000155399.2	696	4	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_1	143.613679323694	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACACTGGGTGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	115405197	115391207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115391511_115392830_115392929_115393857_115394001_115405045
transcript_26177.known	chr11	-	911	4	FSM	ENSMUSG00000020738.17	ENSMUST00000121185.8	911	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	1864.33300554261	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115426643	115413927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426604
transcript_26178.known	chr11	-	1051	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427102	115413927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
transcript_26179.known	chr11	-	397	2	FSM	ENSMUSG00000020738.17	ENSMUST00000050672.6	397	2	0	0	0	0	multi-exon	FALSE	canonical	3	4109	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCTCATTAGATCCATAA	NA	False	NA	NA	False	NA	NA	NA	115427015	115425204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115425510_115426923
transcript_26195.known	chr11	+	2230	19	FSM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	0	0	0	0	multi-exon	TRUE	canonical	3	862	junction_16	81.0315439264927	1511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGATGGATGTTTCCAC	NA	False	NA	91	True	AATGAA	-12	NA	115455259	115474811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
transcript_26198.nnic	chr11	+	2111	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_16	299.37137842857	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455275	115474732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473910_115474039_115474151_115474254_115474546
transcript_2620.known	chr1	+	1206	10	FSM	ENSMUSG00000026197.13	ENSMUST00000160439.8	1206	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	30.0361921605614	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGCTGTTTCTTTTTC	2032	False	NA	16	True	AGTAAA	-22	NA	75145289	75148273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
transcript_26203.nic	chr11	+	2810	18	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	10	0	intron_retention	FALSE	canonical	3	862	junction_15	82.7709559076643	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455269	115474732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
transcript_2621.nic	chr1	+	1109	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	47.0130005660373	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTATGAGTGCTGTTTCT	2023	False	NA	11	True	AGTAAA	-17	NA	75145280	75148268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
transcript_2622.known	chr1	+	1285	9	FSM	ENSMUSG00000026197.13	ENSMUST00000161106.8	1285	9	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	45.8732969711138	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2032	False	NA	12	True	AGTAAA	-18	NA	75145289	75148269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147398_75147619_75147693_75147879
transcript_26271.known	chr11	-	3751	17	FSM	ENSMUSG00000020740.14	ENSMUST00000156173.8	3751	17	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_3	101.135564188618	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3381	False	NA	-2	True	AATAAA	-15	NA	115494877	115475080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115476667_115476911_115477023_115477141_115477247_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
transcript_26278.known	chr11	-	3816	17	FSM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	42.6075385788712	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3381	False	NA	-2	True	AATAAA	-15	NA	115494877	115475080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
transcript_2628.known	chr1	+	1316	9	FSM	ENSMUSG00000026197.13	ENSMUST00000027394.12	1316	9	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_8	17.9304210770411	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2041	False	NA	12	True	AGTAAA	-18	NA	75145298	75148269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
transcript_2630.known	chr1	-	2966	19	FSM	ENSMUSG00000026198.16	ENSMUST00000027396.15	2966	19	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_18	16.1765910736914	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCTGTGGTTTGGTTGTG	NA	False	NA	-2	True	AATAAA	-15	NA	75157036	75148360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213
transcript_26311.known	chr11	-	869	7	FSM	ENSMUSG00000020743.16	ENSMUST00000146244.8	869	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	162.572035315631	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTATTACTACAGTGAGG	NA	False	NA	NA	False	NA	NA	NA	115503725	115499242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115501242_115501309_115502728_115502861_115503610
transcript_26313.known	chr11	-	993	6	FSM	ENSMUSG00000020743.16	ENSMUST00000106506.8	993	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	146.078608974757	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCCACTGGTGCAACAT	NA	False	NA	NA	False	NA	NA	NA	115503704	115498974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115499440_115499886_115499923_115500105_115500262_115500364_115500475_115502728_115502861_115503610
transcript_26314.known	chr11	-	1271	6	FSM	ENSMUSG00000020743.16	ENSMUST00000137304.8	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	137.166468205608	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503753	115498743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500416_115502728_115502861_115503610
transcript_26316.known	chr11	-	1372	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	38.1030182531515	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503795	115498743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
transcript_26319.known	chr11	+	1962	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	0	0	0	0	multi-exon	TRUE	canonical	3	642	junction_4	47.0451910401053	581	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTAACTTGCCCTT	NA	False	NA	NA	False	TATAAA	-15	NA	115494750	115498862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
transcript_26329.nic	chr11	-	1498	5	NIC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	324	junction_4	32.8129166640212	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503795	115498743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115503610
transcript_26338.known	chr11	-	621	4	FSM	ENSMUSG00000020743.16	ENSMUST00000142637.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	34.4222150491349	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCCTTTGCTCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	115503730	115500002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115500262_115500364_115500475_115502728_115502861_115503610
transcript_26342.known	chr11	-	1656	5	FSM	ENSMUSG00000020743.16	ENSMUST00000106507.9	1656	5	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	39.92101576864	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503329	115498743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728
transcript_26357.known	chr11	-	2307	7	FSM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	21.3053201493586	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGACTGCAGACCATT	NA	False	NA	-13	True	AATAAA	-17	NA	115518971	115505003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518890
transcript_26363.known	chr11	-	1055	6	FSM	ENSMUSG00000020744.14	ENSMUST00000106503.10	1055	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	59.5973153757785	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCGCATGCGTCTCAC	NA	False	NA	NA	False	AAAAAG	-20	NA	115518919	115506019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115506418_115507346_115507478_115511702_115511874_115514697_115514854_115515024_115515195_115518890
transcript_26364.nic	chr11	-	1309	6	NIC	ENSMUSG00000020744.14	novel	2307	7	NA	NA	9	212	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	57.631241527491	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTGTGTCACTCCTATA	NA	False	NA	-11	True	ATTAAA	-13	NA	115518947	115505807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115518890
transcript_26371.known	chr11	-	2709	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4470	False	NA	-1	True	AATAAA	-19	NA	115599423	115534870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
transcript_26383.known	chr11	-	483	1	FSM	ENSMUSG00000083394.3	ENSMUST00000118352.3	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTACGCAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	115615634	115615151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115615200_115615600
transcript_26386.known	chr11	+	5329	32	FSM	ENSMUSG00000020747.19	ENSMUST00000093912.11	5329	32	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_13	18.7440729445739	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATTTCTCTCTGCTTGA	NA	False	NA	NA	False	AATAAA	-16	NA	115656258	115690192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115656380_115668073_115668204_115676265_115676386_115676640_115676769_115677001_115677139_115678187_115678391_115679064_115679217_115679488_115679592_115679770_115679858_115680069_115680187_115680444_115680502_115680750_115680856_115680995_115681161_115681792_115682003_115682572_115682889_115683142_115683317_115683686_115683790_115683882_115684101_115684833_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
transcript_26391.nic	chr11	+	4966	32	NIC	ENSMUSG00000020747.19	novel	5329	32	NA	NA	-36	0	combination_of_known_junctions	TRUE	canonical	3	36	junction_13	20.1870029585754	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTGGTGGATCCATGAA	NA	False	NA	15	True	ATTAAA	-23	NA	115656222	115689859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_115656380_115668073_115668204_115676265_115676386_115676640_115676769_115677001_115677139_115678187_115678391_115679064_115679217_115679488_115679592_115679770_115679858_115680069_115680187_115680444_115680502_115680750_115680856_115680995_115681161_115681858_115682003_115682572_115682889_115683142_115683317_115683686_115683790_115683882_115684101_115684833_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
transcript_26396.nnic	chr11	+	4867	31	NIC	ENSMUSG00000020747.19	novel	5329	32	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	25.7846853771769	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTGGTGGATCCATGAA	NA	False	NA	15	True	ATTAAA	-23	NA	115656257	115689859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_115656380_115676265_115676386_115676640_115676769_115677001_115677139_115678187_115678391_115679064_115679217_115679488_115679592_115679770_115679858_115680069_115680187_115680444_115680502_115680750_115680856_115680995_115681161_115681792_115682003_115682572_115682889_115683142_115683317_115683686_115683790_115683882_115684101_115684833_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
transcript_26406.known	chr11	-	4929	20	FSM	ENSMUSG00000034471.13	ENSMUST00000041684.11	4929	20	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_9	9.14911860187284	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTGTGTTTGCATCTG	4120	False	NA	-1	True	AATGAA	-18	NA	115704456	115690008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115690904_115691185_115691409_115691491_115692968_115693106_115693246_115693373_115693476_115693554_115693666_115693824_115693914_115694037_115694099_115694183_115694306_115694407_115694670_115695301_115695397_115695524_115695634_115695906_115696016_115697129_115697261_115697359_115697456_115697544_115697691_115698089_115698188_115698664_115698717_115702712_115703209_115704339
transcript_26435.known	chr11	+	1979	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	26.8730348118704	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATACTTACAGGGG	5932	False	NA	NA	False	ATTAAA	-21	NA	115705549	115713920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
transcript_2644.known	chr1	-	4110	16	FSM	ENSMUSG00000033124.17	ENSMUST00000189702.7	4110	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_15	11.6714276000077	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGCATCTTTTTTTTTC	NA	False	NA	4	True	AATAAA	-19	NA	75168570	75157503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168130
transcript_26447.nic	chr11	+	2083	10	NIC	ENSMUSG00000020781.15	novel	1979	11	NA	NA	-9	0	intron_retention	FALSE	canonical	3	156	junction_1	27.0203398467173	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATACTTACAGGGG	5923	False	NA	NA	False	ATTAAA	-21	NA	115705540	115713920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_115705646_115705740_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
transcript_2645.known	chr1	-	3764	16	FSM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_15	10.0013332444563	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTGTGGCATCTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	75168567	75157509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168467
transcript_2646.known	chr1	-	4041	16	FSM	ENSMUSG00000033124.17	ENSMUST00000188347.7	4041	16	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_15	10.8226100774669	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGGCATCTTTTT	NA	False	NA	-1	True	AATAAA	-14	NA	75168840	75157508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167525_75168467
transcript_26461.nic	chr11	+	3819	27	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	202.96016457021	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACCTGAGGACCCGTGC	6787	False	NA	38	True	AATAAA	-23	NA	115714861	115746604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_115715004_115723487_115723745_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
transcript_26467.known	chr11	+	3551	26	FSM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	0	0	0	0	multi-exon	FALSE	canonical	3	630	junction_7	88.2626444199357	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGAGGACCCGTGCTT	6800	False	NA	40	True	AATAAA	-25	NA	115714874	115746606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
transcript_26469.known	chr11	+	3612	26	FSM	ENSMUSG00000020782.19	ENSMUST00000177736.8	3612	26	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_16	177.819836913658	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACCTGAGGACCCGTGC	6809	False	NA	38	True	AATAAA	-23	NA	115714883	115746604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115742057_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
transcript_26476.nic	chr11	+	3626	25	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-125	0	combination_of_known_junctions	TRUE	canonical	3	54	junction_22	172.677761668954	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACCTGAGGACCCGTGC	6675	False	NA	38	True	AATAAA	-23	NA	115714749	115746604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745888_115745932_115746017_115746080_115746291
transcript_2648.known	chr1	-	3741	16	FSM	ENSMUSG00000033124.17	ENSMUST00000239085.2	3741	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	16.3122312664114	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGGCATCTTTTT	NA	False	NA	-1	True	AATAAA	-14	NA	75168599	75157508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162653_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167525_75168467
transcript_26506.nic	chr11	+	2566	16	ISM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	-27	4268	-27	-2808	5prime_fragment	FALSE	canonical	3	630	junction_7	74.0742570368111	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAATTCCAGAAAGTCTGG	6773	False	NA	NA	False	NA	NA	NA	115714847	115742338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833
transcript_26516.nnic	chr11	-	3635	20	NNC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_19	18.5488797998223	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTCTTGGGTGTTTTAC	NA	False	NA	-2	True	AATAAA	-33	NA	115824329	115783420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614_115823745_115824106
transcript_26517.known	chr11	-	3971	19	FSM	ENSMUSG00000020752.12	ENSMUST00000021097.10	3971	19	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_14	12.1025708930881	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTCTTGGGTGTTTTAC	NA	False	NA	-2	True	AATAAA	-33	NA	115824303	115783420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614
transcript_26536.known	chr11	+	3654	11	FSM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	19.7585424563656	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGGTTTTGTGGAGT	44	False	NA	7	True	NA	NA	NA	115824107	115857551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
transcript_26559.known	chr11	-	1406	8	FSM	ENSMUSG00000020766.5	ENSMUST00000021114.5	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_4	62.9907670591006	1047	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTCCTACTGCAGG	NA	False	NA	9	True	NA	NA	NA	115903545	115899282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115899541_115899628_115899792_115899873_115900025_115900746_115900929_115901066_115901203_115901388_115901509_115901852_115902043_115903339
transcript_2656.known	chr1	+	2770	13	FSM	ENSMUSG00000026199.18	ENSMUST00000145459.9	2770	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	34.990077958695	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	44	False	NA	19	True	AATAAA	-15	NA	75168803	75176031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172212_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
transcript_2657.known	chr1	+	2739	13	FSM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	0	0	0	0	multi-exon	FALSE	canonical	2	42	junction_4	25.5582124222768	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	44	False	NA	19	True	AATAAA	-15	NA	75168803	75176031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
transcript_26579.known	chr11	-	1993	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTAGCCTTGGCCACAA	NA	False	NA	9	True	AATAAA	-39	NA	115915330	115912786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
transcript_26583.known	chr11	+	3696	16	FSM	ENSMUSG00000020770.14	ENSMUST00000106452.2	3696	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_8	23.4630679058719	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	8822	False	NA	19	True	AATAAA	-13	NA	115921147	115952040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943946_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
transcript_26586.known	chr11	+	3735	16	FSM	ENSMUSG00000020770.14	ENSMUST00000021116.12	3735	16	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_13	17.1308688240459	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	8822	False	NA	19	True	AATAAA	-13	NA	115921147	115952040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943985_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
transcript_26598.known	chr11	-	3973	33	FSM	ENSMUSG00000057948.13	ENSMUST00000106451.8	3973	33	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_32	6.68246013362594	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATCTATAGTTGGCT	NA	False	NA	-2	True	AATAAA	-25	NA	115968787	115952921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273_115968488_115968770
transcript_26599.known	chr11	-	3337	32	FSM	ENSMUSG00000057948.13	ENSMUST00000174822.8	3337	32	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	7.27117096203969	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATCCTGTGTAACACAGG	NA	False	NA	NA	False	NA	NA	NA	115968416	115953463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960712_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273
transcript_26601.known	chr11	-	991	7	FSM	ENSMUSG00000057948.13	ENSMUST00000155120.2	991	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	12.657891697365	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAGGATCAGAGA	NA	False	NA	NA	False	NA	NA	NA	115968787	115966222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273_115968488_115968770
transcript_26605.known	chr11	-	1826	8	FSM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_1	94.6975852546475	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	-11	True	AGTAAA	-16	NA	115977821	115969398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
transcript_26608.known	chr11	-	1012	7	FSM	ENSMUSG00000034341.18	ENSMUST00000106444.4	1012	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	412.44046708451	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATACAGAGGGACTCTCTG	NA	False	NA	NA	False	NA	NA	NA	115977821	115970077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115972057_115972151_115973101_115973238_115974664_115974774_115977692
transcript_26610.known	chr11	-	958	2	FSM	ENSMUSG00000034341.18	ENSMUST00000129532.2	958	2	0	0	0	0	multi-exon	FALSE	canonical	3	1218	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGAAATTAAGAAAATAG	NA	False	NA	NA	False	AATACA	-9	NA	115977798	115973921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115974774_115977692
transcript_26612.known	chr11	-	2192	6	FSM	ENSMUSG00000020773.12	ENSMUST00000106441.8	2192	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	39.5777715390849	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	116001063	115996577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603_115998835_115999091_115999188_116000359
transcript_26614.known	chr11	-	2204	6	FSM	ENSMUSG00000020773.12	ENSMUST00000021120.6	2204	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	42.4951761968344	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	116001072	115996577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603_115998835_115999091_115999188_116000359
transcript_26617.known	chr11	-	1503	4	FSM	ENSMUSG00000020773.12	ENSMUST00000141531.8	1503	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	17.6131264181639	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998945	115996577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603
transcript_26618.known	chr11	-	782	4	FSM	ENSMUSG00000020773.12	ENSMUST00000134691.2	782	4	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	44.1437047229462	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGGCCGGCTGGGCCGCA	NA	False	NA	NA	False	NA	NA	NA	115998861	115997217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603
transcript_26624.known	chr11	-	1411	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	1010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTTCACTTTCGGG	407	False	NA	-2	True	AATAAA	-20	NA	116029694	116022642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
transcript_26640.known	chr11	-	995	2	FSM	ENSMUSG00000020775.14	ENSMUST00000138457.2	995	2	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTGGTGCCCCATCTCC	410	False	NA	NA	False	NA	NA	NA	116029691	116028607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116029448_116029536
transcript_26641.known	chr11	-	1403	8	FSM	ENSMUSG00000020775.14	ENSMUST00000142550.8	1403	8	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_5	29.2665442484229	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAATATGTCTTCACTTT	500	False	NA	-6	True	AATAAA	-16	NA	116029601	116022646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267
transcript_26645.nic	chr11	-	5366	31	NIC	ENSMUSG00000020776.19	novel	5252	30	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_30	9.85455337507602	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTTTTGGATTTGCAT	NA	False	NA	-9	True	ATTAAA	-18	NA	116058997	116033110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043774_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116056657_116056739_116057958_116058055_116058377
transcript_26648.known	chr11	-	5252	30	FSM	ENSMUSG00000020776.19	ENSMUST00000103031.8	5252	30	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_29	8.33099451920079	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTTTTGGATTTGCAT	NA	False	NA	-9	True	ATTAAA	-18	NA	116058979	116033110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116034293_116035258_116035369_116036250_116036369_116036448_116036587_116036660_116036838_116037261_116037448_116037529_116037653_116038533_116038653_116038729_116038870_116038946_116039055_116039638_116039846_116039944_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043774_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116056657_116056739_116058377
transcript_26660.known	chr11	-	3987	14	FSM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_12	15.262593015675	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	False	NA	1	True	AATAAA	-15	NA	116089871	116062713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
transcript_26661.known	chr11	-	3743	14	FSM	ENSMUSG00000020777.17	ENSMUST00000072948.11	3743	14	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_11	29.8427833148373	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	False	NA	1	True	AATAAA	-15	NA	116089627	116062713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116080240_116080402_116089047_116089208_116089421
transcript_26672.nic	chr11	-	1915	9	ISM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	-30	5986	-30	1846	5prime_fragment	FALSE	canonical	3	53	junction_7	16.7663166795811	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAATTACAATTCGAAAGT	NA	False	NA	NA	False	NA	NA	NA	116089901	116068699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
transcript_26673.nic	chr11	-	1973	9	ISM	ENSMUSG00000020777.17	ENSMUST00000072948.11	3743	14	-332	5986	-88	1846	5prime_fragment	FALSE	canonical	2	9	junction_6	37.1172129880464	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAATTACAATTCGAAAGT	NA	False	NA	NA	False	NA	NA	NA	116089959	116068699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116080240_116080402_116089047_116089208_116089421
transcript_26674.known	chr11	+	902	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	16.0277537068951	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	9067	False	NA	7	True	AATAAA	-14	NA	116089680	116106144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
transcript_26676.known	chr11	+	435	2	FSM	ENSMUSG00000020778.13	ENSMUST00000146066.8	435	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGCGCTGTGGCTTGTG	9171	False	NA	-63	True	AATGAA	-27	NA	116089784	116106074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116089810_116105664
transcript_26681.known	chr11	-	6384	22	FSM	ENSMUSG00000034282.4	ENSMUST00000037007.4	6384	22	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.11355628773068	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGTCTCCTCTCATTTG	9964	False	NA	NA	False	AATAAA	-15	NA	116128903	116111384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116115028_116115893_116115987_116116087_116116199_116116309_116116394_116117814_116117966_116118383_116118578_116118667_116118807_116118884_116119064_116120226_116120400_116120570_116120669_116120794_116120950_116121241_116121389_116121743_116121870_116123219_116123316_116123455_116123564_116123650_116123813_116123929_116123969_116124211_116124338_116124980_116125108_116125194_116125350_116125757_116125858_116128725
transcript_26687.known	chr11	-	2526	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	820	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	9817	False	NA	-2	True	ATTAAA	-17	NA	116165043	116135991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
transcript_26701.known	chr11	+	1940	2	FSM	ENSMUSG00000020793.6	ENSMUST00000055872.3	1940	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCATTTCATATGCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	116171764	116174764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116172677_116173736
transcript_26703.nnic	chr11	-	2284	20	NIC	ENSMUSG00000020792.16	novel	3449	20	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_13	70.0554983793963	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGAGCCGGGTGAGTGT	8895	False	NA	-6	True	CATAAA	-15	NA	116197585	116179934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116187555_116187625_116188396_116188490_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
transcript_26705.known	chr11	-	3298	19	FSM	ENSMUSG00000020792.16	ENSMUST00000106413.10	3298	19	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_12	61.2926847990569	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCTTCCTCTGGTGGTG	8920	False	NA	NA	False	ATTAAA	-19	NA	116197560	116178826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116188396_116188490_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
transcript_26709.known	chr11	-	3205	18	FSM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_14	26.4175940114993	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCTTCCTCTGGTGGTG	8920	False	NA	NA	False	ATTAAA	-19	NA	116197560	116178826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
transcript_26720.known	chr11	-	2623	3	FSM	ENSMUSG00000034227.8	ENSMUST00000036215.8	2623	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCCGTATTTCCAGCTT	NA	False	NA	NA	False	AATAAA	-35	NA	116226225	116221529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116223304_116224867_116225535_116226043
transcript_26721.known	chr11	-	4619	19	FSM	ENSMUSG00000052949.15	ENSMUST00000100202.10	4619	19	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_1	6.47335469348423	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTTTGTGAACGTATTCG	3349	False	NA	NA	False	AATAAA	-42	NA	116303830	116227178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116229657_116235020_116235132_116236732_116236782_116237858_116237925_116238167_116238338_116238681_116238794_116240159_116240269_116240785_116241025_116245190_116245304_116245461_116245622_116246270_116246343_116249494_116249543_116249761_116249806_116250068_116250136_116250638_116250757_116251079_116251227_116253110_116253200_116287014_116287134_116303522
transcript_26730.known	chr11	+	1482	3	FSM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	0	0	0	0	multi-exon	TRUE	canonical	3	1535	junction_2	51	1489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTGTTTTTGTTTTTGC	NA	False	NA	36	True	TTTAAA	-29	NA	116324919	116329903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116325255_116325384_116325448_116328819
transcript_26736.known	chr11	-	2156	14	FSM	ENSMUSG00000070331.15	ENSMUST00000093909.12	2156	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.33825910054933	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGAGTTGGGTGCCAA	NA	False	NA	NA	False	AATAAA	-8	NA	116345173	116332156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116332381_116333738_116333940_116334570_116334659_116335307_116335444_116335778_116335980_116336425_116336528_116336775_116336842_116337300_116337423_116337588_116337754_116337908_116337984_116338089_116338213_116338984_116339240_116344364_116344480_116344890
transcript_26739.known	chr11	-	1841	10	FSM	ENSMUSG00000015869.17	ENSMUST00000106391.8	1841	10	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_5	49.0028973696177	1353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	False	NA	-7	True	AATAAA	-27	NA	116381174	116361670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
transcript_26742.known	chr11	-	1691	9	FSM	ENSMUSG00000015869.17	ENSMUST00000152874.8	1691	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	291.250321888234	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	False	NA	-7	True	AATAAA	-27	NA	116381140	116361670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116370477_116370651_116376694_116376762_116378943_116378997_116380873
transcript_26749.known	chr11	-	703	5	FSM	ENSMUSG00000015869.17	ENSMUST00000135196.2	703	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	363.982399986593	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGAAGAAGTGAGGAGCCA	NA	False	NA	NA	False	NA	NA	NA	116381161	116369359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116369467_116370477_116370666_116376694_116376762_116378943_116378997_116380873
transcript_26750.known	chr11	-	738	3	FSM	ENSMUSG00000015869.17	ENSMUST00000144154.2	738	3	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_2	49.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116381153	116376356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116376762_116378943_116378997_116380873
transcript_26751.known	chr11	+	2527	6	FSM	ENSMUSG00000061878.17	ENSMUST00000063446.13	2527	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.49666295470958	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATCCTATCCTGGGGATT	NA	False	NA	NA	False	AATAAA	-18	NA	116423298	116427500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116424195_116424795_116425000_116425674_116425828_116425905_116426001_116426077_116426194_116426437
transcript_26752.known	chr11	+	1050	6	FSM	ENSMUSG00000061878.17	ENSMUST00000154034.8	1050	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGACTTCGTCCTGGTGC	NA	False	NA	NA	False	NA	NA	NA	116424093	116426821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116424195_116424795_116425000_116425677_116425828_116425905_116426001_116426077_116426194_116426437
transcript_26753.known	chr11	+	1879	6	FSM	ENSMUSG00000061878.17	ENSMUST00000106386.8	1879	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.62480768092719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATCCTATCCTGGGGATT	NA	False	NA	NA	False	AATAAA	-18	NA	116423269	116427500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116423518_116424795_116425000_116425674_116425828_116425905_116426001_116426077_116426194_116426437
transcript_26754.known	chr11	-	5205	18	FSM	ENSMUSG00000020802.9	ENSMUST00000082152.5	5205	18	0	0	0	0	multi-exon	FALSE	canonical	2	105	junction_3	24.8790847526891	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGGGGGGAGTTGGC	7465	False	NA	1	True	ATTAAA	-19	NA	116472273	116428565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116430538_116430624_116430683_116430757_116430962_116431912_116432050_116432164_116432865_116433616_116433707_116434233_116434363_116434445_116434559_116434691_116434847_116435173_116435647_116435871_116436023_116436150_116436261_116436659_116436804_116437286_116437351_116437696_116437795_116439595_116439707_116439859_116439920_116471837
transcript_26762.known	chr11	-	3593	19	FSM	ENSMUSG00000020806.16	ENSMUST00000103029.10	3593	19	0	0	0	0	multi-exon	FALSE	canonical	2	65	junction_12	15.7409586041568	335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTTTTGCCTTAGAC	NA	False	NA	-15	True	ATTAAA	-19	NA	116515026	116488990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116490265_116490886_116491041_116491223_116491325_116491435_116491512_116491720_116491816_116491911_116491976_116492110_116492218_116492419_116492582_116492714_116492790_116493014_116493127_116494478_116494680_116494757_116494877_116495203_116495333_116495786_116495991_116496068_116496265_116496933_116497059_116498053_116498254_116501129_116501306_116515003
transcript_26777.known	chr11	-	3643	9	FSM	ENSMUSG00000057286.7	ENSMUST00000079545.6	3643	9	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_5	7.34421541078419	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGCCAAAAAAAGGTTTC	NA	False	NA	NA	False	AAGAAA	-21	NA	116585694	116566128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116568508_116569291_116569392_116570732_116570817_116572684_116572789_116575171_116575311_116575922_116576092_116576661_116576837_116581137_116581199_116585262
transcript_26779.nnic	chr11	-	2958	8	NNC	ENSMUSG00000057286.7	novel	3643	9	NA	NA	-4	-814	intron_retention	FALSE	canonical	3	10	junction_3	7.67184090405574	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTTTTCCACATTTCCA	NA	False	NA	2	True	AATAAA	-21	NA	116585698	116567528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_116568508_116569291_116569392_116570732_116570916_116572684_116572789_116575171_116576092_116576661_116576837_116581137_116581199_116585262
transcript_26780.known	chr11	+	857	6	FSM	ENSMUSG00000020812.19	ENSMUST00000239281.2	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	61.1901952930369	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTAGCATTGTGGGTATA	NA	False	NA	4	True	AATAAA	-17	NA	116562513	116566625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566314
transcript_26781.known	chr11	+	1988	5	FSM	ENSMUSG00000020812.19	ENSMUST00000106378.8	1988	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	18.9340962287615	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562494	116566624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125
transcript_26782.known	chr11	+	1151	5	FSM	ENSMUSG00000020812.19	ENSMUST00000153405.3	1151	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	29.8862426544388	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTGGTAGCATTGTG	NA	False	NA	-2	True	AATAAA	-11	NA	116562502	116566619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116562583_116562989_116563565_116564763_116564898_116565125_116565202_116566333
transcript_26783.known	chr11	+	661	5	FSM	ENSMUSG00000020812.19	ENSMUST00000142834.8	661	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.9915535720125	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTAGCATTGTGGG	NA	False	NA	0	True	AATAAA	-13	NA	116562494	116566621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116562583_116563489_116563565_116564763_116564898_116565125_116565202_116566333
transcript_26784.known	chr11	+	966	4	FSM	ENSMUSG00000020812.19	ENSMUST00000144049.8	966	4	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	19.4422220952236	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAAAGCCCATAAGCCTAT	NA	False	NA	NA	False	NA	NA	NA	116562533	116565413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763
transcript_26786.nnic	chr11	-	1614	5	NNC	ENSMUSG00000020814.14	novel	2063	4	NA	NA	-33	-335	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	51.492717931762	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCTCGAAATATGGAGACC	6293	False	NA	-7	True	AATAAA	-21	NA	116718905	116694222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_116694930_116695076_116695481_116702748_116702843_116707010_116707069_116718554
transcript_26787.known	chr11	-	2063	4	FSM	ENSMUSG00000020814.14	ENSMUST00000021170.9	2063	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	18.006171781426	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCGTTCTTAAACGTT	6326	False	NA	NA	False	NA	NA	NA	116718872	116693887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116695481_116702748_116702843_116707010_116707069_116718554
transcript_26795.known	chr11	+	2586	14	FSM	ENSMUSG00000020818.17	ENSMUST00000139954.9	2586	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	30.6806417003936	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGAGTATTTACTGGGA	NA	False	NA	5	True	AATAAA	-16	NA	116743265	116765538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116743682_116744825_116745000_116745468_116745525_116749299_116749408_116750149_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
transcript_26805.nic	chr11	+	2349	14	NIC	ENSMUSG00000020818.17	novel	2952	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	8.80424857096892	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGAGTATTTACTGGGA	NA	False	NA	5	True	AATAAA	-16	NA	116744575	116765538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_116744730_116744825_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
transcript_26819.known	chr11	-	2072	6	FSM	ENSMUSG00000056962.12	ENSMUST00000141735.8	2072	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	108.952466699933	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734107	116728257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116728590_116729815_116729955_116730663_116731372_116731894_116732182_116733157_116733547_116733890
transcript_2682.known	chr1	+	1167	5	FSM	ENSMUSG00000026199.18	ENSMUST00000127625.3	1167	5	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	48.7307654362211	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTGGTTTCTTGTT	76	False	NA	NA	False	NA	NA	NA	75168835	75172178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171937_75171937
transcript_26820.known	chr11	-	1668	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	32.356761271796	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734275	116728257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
transcript_26823.known	chr11	+	1276	5	FSM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	13.3603892158874	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACTCCCAATCATTAAA	8668	False	NA	15	True	ATTAAA	-17	NA	116734103	116740566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041_116740127_116740215
transcript_26831.known	chr11	+	541	4	FSM	ENSMUSG00000090266.11	ENSMUST00000140869.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	46.2048578494609	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGGGGCCACATATCAAA	9065	False	NA	NA	False	NA	NA	NA	116734500	116739879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726
transcript_26833.known	chr11	+	847	4	FSM	ENSMUSG00000090266.11	ENSMUST00000176799.8	847	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	14.8996644257513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATGGGTATGAAGA	9063	False	NA	17	True	CATAAA	-17	NA	116734498	116740455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116734601_116739079_116739185_116739726_116740127_116740215
transcript_2684.known	chr1	+	1500	8	FSM	ENSMUSG00000026201.13	ENSMUST00000191108.7	1500	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	77.7888297946198	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187513	75190886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189756_75189873_75190219_75190342_75190457
transcript_26840.known	chr11	+	1785	3	FSM	ENSMUSG00000090266.11	ENSMUST00000175930.8	1785	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	16.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAATACATAAGAGAAG	8945	False	NA	NA	False	NA	NA	NA	116734380	116741186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116734601_116739079_116739185_116739726
transcript_26842.known	chr11	+	585	2	FSM	ENSMUSG00000090266.11	ENSMUST00000128784.2	585	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATCAAAGTCTATGCAAT	8951	False	NA	24	True	AATAAA	-29	NA	116734386	116736959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116734601_116736588
transcript_26846.known	chr11	-	1899	3	FSM	ENSMUSG00000034120.19	ENSMUST00000092404.13	1899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1775	junction_2	41.5	1702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTGGTCTTTTGTTT	6003	False	NA	-5	True	ATTAAA	-31	NA	116743920	116740726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116741788_116742846_116743158_116743393
transcript_26847.known	chr11	+	427	2	FSM	ENSMUSG00000090266.11	ENSMUST00000176765.2	427	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCTCCACCCCTCAGT	8975	False	NA	-54	True	NA	NA	NA	116734410	116736881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116734601_116736644
transcript_26848.known	chr11	-	1326	5	FSM	ENSMUSG00000034120.19	ENSMUST00000190993.7	1326	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	732.164428253654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCAAAATGTT	6025	False	NA	NA	False	NA	NA	NA	116743898	116740879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_116741180_116741681_116741788_116742473_116742578_116742846_116743158_116743393
transcript_26849.known	chr11	+	3298	13	FSM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_12	6.07076326887045	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116744645	116766461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
transcript_2685.known	chr1	+	2876	8	FSM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	30.7265756142723	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCAAGTAGCGGTCTACT	NA	False	NA	NA	False	AATAAA	-13	NA	75187481	75192250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
transcript_26853.known	chr11	+	4258	18	FSM	ENSMUSG00000043857.17	ENSMUST00000103027.10	4258	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	10.2666861396781	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGGGATTTTTTGTCTT	1808	False	NA	NA	False	AATAAA	-32	NA	116809688	116877774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116810370_116814165_116814279_116822448_116822597_116835690_116835807_116836317_116836392_116837297_116837469_116838052_116838218_116839340_116839511_116857532_116857665_116859210_116859345_116864126_116864258_116865017_116865024_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
transcript_2686.nic	chr1	+	1498	8	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_1	57.8389742195996	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187467	75190886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_75187669_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
transcript_26860.known	chr11	+	422	3	FSM	ENSMUSG00000086859.5	ENSMUST00000232907.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	299	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	707	False	NA	20	True	AATAAA	-16	NA	116967440	116969781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116967588_116967933_116968029_116969601
transcript_26861.known	chr11	+	600	2	FSM	ENSMUSG00000086859.5	ENSMUST00000149822.3	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_1	0	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	875	False	NA	20	True	AATAAA	-16	NA	116967608	116969781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116968029_116969601
transcript_26862.known	chr11	+	2153	1	FSM	ENSMUSG00000086859.5	ENSMUST00000182811.2	2153	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTTCCATTGTTCAA	894	False	NA	19	True	AATAAA	-15	NA	116967627	116969780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116967600_116969800
transcript_26863.known	chr11	+	193	1	FSM	ENSMUSG00002076896.1	ENSMUST00020182044.1	193	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGCTGAAGCTGTGGGG	1335	False	NA	25	True	NA	NA	NA	116968068	116968261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_116968100_116968300
transcript_26867.known	chr11	+	2866	17	FSM	ENSMUSG00000020823.17	ENSMUST00000021177.15	2866	17	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_16	82.8488599423673	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGTGTCCTTTTCTTCT	NA	False	NA	5	True	AATAAA	-15	NA	117005997	117050091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117049579
transcript_26869.known	chr11	+	4654	16	FSM	ENSMUSG00000020823.17	ENSMUST00000090433.6	4654	16	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_5	24.9420662068455	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGTCCTTTTCTTCTTGG	NA	False	NA	8	True	AATAAA	-18	NA	117006063	117050094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626
transcript_26881.known	chr11	+	1047	3	FSM	ENSMUSG00000020823.17	ENSMUST00000146585.2	1047	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	191.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGATTGAAGGAATAGT	NA	False	NA	NA	False	AATAAA	-15	NA	117006077	117019589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117006178_117007985_117008079_117018735
transcript_26882.known	chr11	+	2589	17	FSM	ENSMUSG00000020823.17	ENSMUST00000103026.10	2589	17	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_16	87.2585955651362	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTTCAAATCTTTTGA	NA	False	NA	3	True	ATTAAA	-17	NA	117006063	117048385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117048084
transcript_26884.known	chr11	+	3616	12	FSM	ENSMUSG00000059248.14	ENSMUST00000093907.11	3616	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	260.952736292441	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCTTTGGCAAGACCT	3698	False	NA	103	True	AATAAA	-28	NA	117090486	117253151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117090600_117109700_117109758_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_26885.known	chr11	+	3869	11	FSM	ENSMUSG00000059248.14	ENSMUST00000106354.9	3869	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	237.377863331862	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	7838	False	NA	91	True	AATAAA	-16	NA	117123110	117253139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117123546_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_26889.known	chr11	+	3784	11	FSM	ENSMUSG00000059248.14	ENSMUST00000019038.15	3784	11	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	218.744622791053	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	696	False	NA	91	True	AATAAA	-16	NA	117157071	117253139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117157422_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_26900.nic	chr11	+	2951	10	NIC	ENSMUSG00000059248.14	novel	647	4	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	178.114819397177	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117198941	117253139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_117199098_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_26905.nnic	chr11	+	3008	10	NNC	ENSMUSG00000059248.14	novel	778	7	NA	NA	-86	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	196.831569283656	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117217172	117253139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_117217386_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_26909.known	chr11	+	2924	10	FSM	ENSMUSG00000059248.14	ENSMUST00000100193.8	2924	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	196.831569283656	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACTTTTTTTCTGGAGT	NA	False	NA	86	True	AATAAA	-11	NA	117222545	117253134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117222680_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_26911.known	chr11	+	2932	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	1289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCTCTTTGGCAAGACC	NA	False	NA	102	True	AATAAA	-27	NA	117223170	117253150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_26919.known	chr11	+	1784	2	FSM	ENSMUSG00000054418.7	ENSMUST00000155384.2	1784	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTTGTGACCAAATAC	NA	False	NA	NA	False	NA	NA	NA	117502072	117504683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117502261_117503087
transcript_26920.known	chr11	+	6612	18	FSM	ENSMUSG00000025571.14	ENSMUST00000138299.2	6612	18	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	17.8043966421889	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAATAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-26	NA	117611843	117653090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117614377_117622993_117623207_117624435_117624603_117626797_117626879_117629116_117629175_117630692_117630836_117632494_117632645_117633752_117633891_117638002_117638123_117640069_117640154_117640402_117640644_117643802_117643971_117646156_117646349_117646788_117646933_117648762_117648958_117649729_117649801_117650449_117650590_117651316
transcript_26927.nic	chr11	+	636	2	ISM	ENSMUSG00000025571.14	ENSMUST00000106344.8	8847	22	-57	62655	-57	-48517	5prime_fragment	FALSE	canonical	3	108	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGGAAGACAAGAAAAAGA	NA	False	NA	NA	False	AAAAAG	-6	NA	117545581	117591610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_117546158_117591550
transcript_26943.known	chr11	-	2865	20	FSM	ENSMUSG00000025572.19	ENSMUST00000026659.10	2865	20	0	0	0	0	multi-exon	TRUE	canonical	3	224	junction_9	41.6618095045227	503	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTGCTTCAGGATG	NA	False	NA	-4	True	ATTAAA	-15	NA	117671465	117656813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
transcript_26971.known	chr11	+	2644	16	FSM	ENSMUSG00000050106.19	ENSMUST00000106334.9	2644	16	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	5.15708789488366	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTGGAAATACTTGAAT	7632	False	NA	NA	False	NA	NA	NA	117673140	117683936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117673235_117673875_117674097_117674220_117674370_117674596_117674747_117674935_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041_117681166_117681508_117681607_117681733_117681918_117682053_117682185_117682268_117682428_117682914_117682994_117683363
transcript_26972.known	chr11	+	2577	16	FSM	ENSMUSG00000050106.19	ENSMUST00000050874.14	2577	16	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	5.46504040851179	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGAGTGTTCTATAG	7614	False	NA	NA	False	NA	NA	NA	117673122	117683854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117673235_117673875_117674097_117674220_117674370_117674596_117674747_117674938_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041_117681166_117681508_117681607_117681733_117681918_117682053_117682185_117682268_117682428_117682914_117682994_117683363
transcript_26976.known	chr11	+	2327	11	FSM	ENSMUSG00000017718.16	ENSMUST00000073388.13	2327	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.17312669668102	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGGTTTTCTGTTTGTTT	NA	False	NA	15	True	NA	NA	NA	117716749	117730734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
transcript_26981.known	chr11	+	1583	10	FSM	ENSMUSG00000017718.16	ENSMUST00000149668.2	1583	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.4998184439579	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGACAGGTGATAATCTTT	NA	False	NA	NA	False	GATAAA	-21	NA	117716799	117728060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233
transcript_26990.known	chr11	-	1440	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	0	0	0	0	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716918	117706351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
transcript_26992.nic	chr11	-	1199	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	149	junction_5	366.911215418662	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716709	117706351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716539
transcript_26994.nnic	chr11	-	1141	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	399.354178643469	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716709	117706351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_117706966_117707272_117707393_117712922_117713017_117715496_117715608_117716426_117716459_117716539
transcript_26998.known	chr11	+	1520	4	FSM	ENSMUSG00000048277.16	ENSMUST00000026649.14	1520	4	0	0	0	0	multi-exon	FALSE	canonical	3	588	junction_1	45.536310297998	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700493	117705109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117700630_117703284_117703523_117703871_117704012_117704103
transcript_26999.known	chr11	+	1402	4	FSM	ENSMUSG00000048277.16	ENSMUST00000120928.2	1402	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	286.604256772296	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700521	117705109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117700630_117703374_117703523_117703871_117704012_117704103
transcript_27.known	ERCC-00076	+	626	1	FSM	ERCC-00076A	DQ883650	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00076_+_0_600
transcript_27005.known	chr11	+	947	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	0	0	0	0	multi-exon	FALSE	canonical	3	1683	junction_1	206.515536138729	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAAGCTCTGTCTGTCT	NA	False	NA	29	True	AATAAA	-18	NA	117740076	117746558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
transcript_27007.known	chr11	+	3334	3	FSM	ENSMUSG00000017716.16	ENSMUST00000093906.5	3334	3	0	0	0	0	multi-exon	FALSE	canonical	3	1683	junction_1	252.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTCTTGGAGAAATGG	NA	False	NA	40	True	AATAAA	-29	NA	117740144	117746569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117740288_117740579_117740690_117743488
transcript_27013.known	chr11	-	2552	2	FSM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_1	0	4451	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGAGCCTTTCTTTC	NA	False	NA	NA	False	AATAAA	-30	NA	117860012	117856904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_117859145_117859700
transcript_27016.nic	chr11	-	2053	9	ISM	ENSMUSG00000033987.17	ENSMUST00000132685.9	13612	81	96091	0	54651	0	3prime_fragment	FALSE	canonical	1	2	junction_7	3.45506874027131	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCGTCTGATGCACTCAG	NA	False	NA	NA	False	ATTAAA	-17	NA	117925369	117913901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_117914324_117915419_117915646_117915928_117916073_117916343_117916527_117917498_117917682_117918149_117918330_117923418_117923611_117924561_117924790_117925074
transcript_27031.known	chr11	+	2863	10	FSM	ENSMUSG00000017715.12	ENSMUST00000132676.8	2863	10	0	0	0	0	multi-exon	TRUE	canonical	1	116	junction_9	67.5268579397108	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877117	117914837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905399_117905549_117910432_117910559_117914230
transcript_27034.nnic	chr11	+	2130	10	NNC	ENSMUSG00000017715.12	novel	2863	10	NA	NA	-84	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	102.120601662694	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877626	117914837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905399_117905549_117910432_117910559_117914454
transcript_27035.known	chr11	+	2197	10	FSM	ENSMUSG00000017715.12	ENSMUST00000017859.10	2197	10	0	0	0	0	multi-exon	FALSE	canonical	1	46	junction_7	99.2782596518803	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877710	117914837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905472_117905549_117910432_117910559_117914230
transcript_27063.known	chr11	-	3135	13	FSM	ENSMUSG00000017132.18	ENSMUST00000017276.14	3135	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	8.05665701282003	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCACTTCATGTTCTGCTC	8632	False	NA	-6	True	AATAAA	-16	NA	118139386	118055000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118056921_118059841_118059997_118061651_118061724_118068045_118068123_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
transcript_27065.known	chr11	-	3179	13	FSM	ENSMUSG00000017132.18	ENSMUST00000106305.9	3179	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	13.1368332899862	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTCTGCTCTGCTGTGGG	8600	False	NA	3	True	AATAAA	-25	NA	118139418	118054991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118056921_118059841_118059997_118061651_118061724_118068045_118068125_118073044_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
transcript_27069.known	chr11	-	5655	21	FSM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_6	17.6138439870461	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTGTGTCTGCCTTGT	NA	False	NA	-4	True	AATAAA	-25	NA	118181057	118150476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
transcript_27072.nic	chr11	-	3665	20	ISM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	-27	2448	-14	289	5prime_fragment	FALSE	canonical	3	124	junction_5	13.8239825330761	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAAACTTCAATGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	118181084	118152924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
transcript_27075.nic	chr11	-	3660	19	ISM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	-53	2737	-40	0	5prime_fragment	FALSE	canonical	3	124	junction_4	13.8996624881308	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGTGCGAGGCTGTGACT	NA	False	NA	0	True	NA	NA	NA	118181110	118153213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
transcript_27085.nic	chr11	-	3361	17	ISM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	-105	4124	-92	-1387	5prime_fragment	FALSE	canonical	3	124	junction_2	8.95627398810465	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAAAAGAAAGCCCGAG	NA	False	NA	NA	False	NA	NA	NA	118181162	118154600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
transcript_27097.known	chr11	-	3709	5	FSM	ENSMUSG00000017466.10	ENSMUST00000017610.10	3709	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	3.74165738677394	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGAAGGTTGATTCCTT	2266	False	NA	-7	True	AATAAA	-11	NA	118246332	118191894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118194723_118201401_118201527_118208244_118208354_118210934_118211036_118245786
transcript_27099.known	chr11	-	2330	6	FSM	ENSMUSG00000033880.12	ENSMUST00000043722.10	2330	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	1.85472369909914	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGTTTGTTCATCCATAC	9875	False	NA	NA	False	ATTAAA	-18	NA	118292918	118283576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118284949_118287416_118287670_118288946_118289079_118289205_118289398_118290553_118290628_118292611
transcript_27101.known	chr11	-	1600	6	FSM	ENSMUSG00000025575.15	ENSMUST00000106289.9	1600	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	74.5133545077659	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGTTTGCTTTTTTTCTT	9021	False	NA	NA	False	CATAAA	-17	NA	118309849	118298469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118298921_118299506_118299711_118300905_118301017_118301678_118302338_118308399_118308481_118309755
transcript_27106.known	chr11	-	2873	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106288.8	2873	5	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	37.662979170533	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTCTTGTCTATGTTGGC	8992	False	NA	-1	True	AATAAA	-17	NA	118309878	118297114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309755
transcript_27107.known	chr11	-	1476	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106287.8	1476	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	67.913547985656	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGTTTGCTTTTTTTCTT	8992	False	NA	NA	False	CATAAA	-17	NA	118309878	118298469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309797
transcript_27110.known	chr11	-	2995	5	FSM	ENSMUSG00000025575.15	ENSMUST00000092378.10	2995	5	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_4	68.7786304021823	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTTGTCTATGTTGG	9021	False	NA	-2	True	AATAAA	-16	NA	118309849	118297115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308633_118309755
transcript_27113.known	chr11	-	4182	4	FSM	ENSMUSG00000025575.15	ENSMUST00000017620.10	4182	4	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	3.68178700572909	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTCTTGTCTATGTTGGC	8958	False	NA	-1	True	AATAAA	-17	NA	118309912	118297114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399
transcript_27117.known	chr11	+	4064	14	FSM	ENSMUSG00000033857.13	ENSMUST00000135383.9	4064	14	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_11	10.2772224737595	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGTTGAGTCTTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	118367654	118380035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_118367931_118369708_118369780_118369911_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
transcript_27119.known	chr11	+	3807	14	FSM	ENSMUSG00000033857.13	ENSMUST00000171769.8	3807	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	29.6532225814911	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACGGCCCCCAGTCCCG	NA	False	NA	NA	False	NA	NA	NA	118367785	118379913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_118367931_118369708_118369780_118369915_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
transcript_27128.known	chr11	+	3807	5	FSM	ENSMUSG00000025577.8	ENSMUST00000026662.8	3807	5	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_1	10.9630059746403	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGCTGTTCTCTTCCCC	NA	False	NA	13	True	AATAAA	-15	NA	118913787	118922096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_118914007_118914083_118914128_118915000_118915067_118917275_118917382_118918724
transcript_27133.known	chr11	-	3580	5	FSM	ENSMUSG00000025578.10	ENSMUST00000026663.8	3580	5	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_4	2.91547594742265	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACGTGTCTTGGCTTCAT	NA	False	NA	NA	False	AATATA	-14	NA	118931795	118927130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118930346_118930757_118930825_118930919_118930986_118931173_118931218_118931607
transcript_27135.known	chr11	-	5179	5	FSM	ENSMUSG00000039989.8	ENSMUST00000026665.8	5179	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	7	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTTTCTTTTATGT	NA	False	NA	NA	False	AATAAA	-17	NA	118977047	118968398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_118973128_118973342_118973410_118975388_118975455_118976582_118976627_118976774
transcript_27139.nnic	chr11	-	2969	13	NNC	ENSMUSG00000039976.5	novel	2855	12	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.00520156925266	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAGAAAGAAAAGGAAGGG	NA	False	NA	NA	False	NA	NA	NA	119119356	119037960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_119038643_119039756_119039904_119041853_119042034_119044714_119044902_119045907_119046043_119046845_119046995_119047468_119047634_119048565_119048714_119049556_119049719_119066172_119066218_119099596_119100195_119101330_119101567_119119221
transcript_27141.known	chr11	-	2855	12	FSM	ENSMUSG00000039976.5	ENSMUST00000207655.2	2855	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.02055552462662	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAGAAAGAAAAGGAAGGG	NA	False	NA	NA	False	NA	NA	NA	119119287	119037960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119038643_119039756_119039904_119041853_119042034_119044714_119044902_119045907_119046043_119046845_119046995_119047468_119047634_119048565_119048714_119049556_119049719_119099596_119100195_119101330_119101567_119119221
transcript_27143.known	chr11	-	6986	12	FSM	ENSMUSG00000039976.5	ENSMUST00000036113.4	6986	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.08100420768356	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGTCCTGTGCCTTGA	NA	False	NA	-1	True	AATAAA	-15	NA	119119325	119033870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119038643_119039756_119039904_119041853_119042034_119044714_119044902_119045907_119046043_119046845_119046995_119047468_119047637_119048565_119048714_119049556_119049719_119099596_119100195_119101330_119101567_119119221
transcript_27146.known	chr11	+	4769	21	FSM	ENSMUSG00000039963.21	ENSMUST00000236813.2	4769	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.20832508250016	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGGTCAGAAGAGTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	119119423	119156064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119119574_119119853_119119989_119121450_119121521_119122298_119123115_119125477_119125623_119126969_119127125_119128689_119128774_119128854_119129075_119133252_119133411_119133538_119133662_119133822_119133945_119136660_119136905_119136993_119137177_119141764_119142011_119142628_119142843_119144075_119144246_119144445_119144538_119145167_119145289_119150680_119150870_119153900_119154060_119155091
transcript_27155.known	chr11	+	3363	20	FSM	ENSMUSG00000025579.15	ENSMUST00000026666.13	3363	20	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	100.783495768854	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCACGTCACCTCATG	NA	False	NA	19	True	AATAAA	-20	NA	119158851	119176280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119158918_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
transcript_27159.known	chr11	+	3633	20	FSM	ENSMUSG00000025579.15	ENSMUST00000106259.9	3633	20	0	0	0	0	multi-exon	TRUE	canonical	3	393	junction_7	40.3001893687597	1086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCACGTCACCTCATG	NA	False	NA	19	True	AATAAA	-20	NA	119158712	119176280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
transcript_2718.known	chr1	-	2840	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATTCTCCTTTTTATGT	NA	False	NA	NA	False	AATATA	-16	NA	75195938	75190871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
transcript_27193.known	chr11	-	1509	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	0	0	0	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	1498	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190915	119179188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
transcript_27217.known	chr11	-	4223	8	FSM	ENSMUSG00000005043.14	ENSMUST00000100172.3	4223	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	5.89015089373951	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTGAGTCTTAATGTC	6162	False	NA	-23	True	NA	NA	NA	119246336	119234323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119237664_119238513_119238626_119240365_119240448_119240802_119240960_119241227_119241379_119241749_119241856_119243471_119243633_119246222
transcript_27218.known	chr11	-	4357	8	FSM	ENSMUSG00000005043.14	ENSMUST00000005173.11	4357	8	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	3.49927106111883	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCATTTATTTCTTTT	6136	False	NA	-7	True	NA	NA	NA	119246362	119234307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119237664_119238513_119238718_119240365_119240448_119240802_119240960_119241227_119241379_119241749_119241856_119243471_119243633_119246222
transcript_27223.nnic	chr11	+	2449	17	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	-18	-238	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	13.6358901432946	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGAACTCATGCATCCT	NA	False	NA	NA	False	TTTAAA	-8	NA	119246364	119271637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_119246466_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
transcript_27224.nnic	chr11	+	2687	17	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	13.6358901432946	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAAATACAATATTCTG	NA	False	NA	NA	False	ATTAAA	-45	NA	119246364	119271875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_119246466_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
transcript_27227.known	chr11	+	2695	17	FSM	ENSMUSG00000039908.15	ENSMUST00000050880.8	2695	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.3122605346408	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATGTGTGTGTGGTGT	NA	False	NA	NA	False	ATTAAA	-24	NA	119246382	119271905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119246462_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
transcript_2725.known	chr1	+	691	3	FSM	ENSMUSG00000026201.13	ENSMUST00000144355.8	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	43	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCCCTGGTTTGGCCTTT	NA	False	NA	NA	False	CATAAA	-14	NA	75187491	75188879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75187697_75187883_75188059_75188568
transcript_27253.known	chr11	-	4320	3	FSM	ENSMUSG00000109408.2	ENSMUST00000207446.2	4320	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATCTTATTTTTCTGT	9030	False	NA	NA	False	TTTAAA	-3	NA	119382061	119352028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119356057_119379727_119379827_119381868
transcript_27255.known	chr11	+	5070	9	FSM	ENSMUSG00000039850.17	ENSMUST00000106244.9	5070	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	7.28010988928052	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAGAAAAA	6254	False	NA	NA	False	NA	NA	NA	119382172	119402249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119382286_119382610_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
transcript_2726.known	chr1	+	636	3	FSM	ENSMUSG00000026201.13	ENSMUST00000123825.8	636	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	98.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGCCCTGGTTTGGCCTT	NA	False	NA	NA	False	CATAAA	-13	NA	75187517	75188878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75187669_75187883_75188059_75188568
transcript_27263.known	chr11	+	5126	8	FSM	ENSMUSG00000039850.17	ENSMUST00000106245.9	5126	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	3.65892813567591	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAATACACTACCAAC	6537	False	NA	NA	False	NA	NA	NA	119382455	119402263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
transcript_27269.known	chr11	-	5217	5	FSM	ENSMUSG00000025582.5	ENSMUST00000026670.5	5217	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	7.08872343937891	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTCATTGGATTCTT	NA	False	NA	NA	False	AGTAAA	-15	NA	119438579	119429544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119433521_119434007_119434188_119435417_119435663_119437477_119437686_119437971
transcript_27271.known	chr11	+	6594	34	FSM	ENSMUSG00000025583.16	ENSMUST00000026671.13	6594	34	0	0	0	0	multi-exon	TRUE	canonical	3	92	junction_14	15.8664073872836	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCGCTGCCCTTGCCAG	2304	False	NA	8	True	AATAAA	-15	NA	119493974	119790233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119494798_119548489_119548593_119562103_119562187_119615835_119615995_119634692_119634840_119647064_119647241_119671368_119671429_119689594_119689696_119690147_119690293_119702770_119702847_119707903_119708006_119712486_119712571_119713736_119713848_119734507_119734583_119737183_119737250_119737578_119737771_119742152_119742294_119747092_119747211_119748138_119748280_119748661_119748821_119756377_119756497_119762320_119762425_119763041_119763226_119764979_119765091_119775749_119775856_119777862_119777978_119779367_119779493_119781939_119782045_119783377_119783485_119785081_119785210_119785744_119785832_119786728_119786846_119787245_119787376_119788239
transcript_27272.known	chr11	+	6138	33	FSM	ENSMUSG00000025583.16	ENSMUST00000147781.8	6138	33	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	25.2707216952742	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGAGATCTTGAGGCAT	2853	False	NA	NA	False	NA	NA	NA	119494523	119790402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119494798_119548489_119548593_119562103_119562187_119615835_119615995_119634692_119634840_119647064_119647241_119671368_119671429_119689594_119689696_119690147_119690293_119707903_119708006_119712486_119712571_119713736_119713848_119734507_119734583_119737183_119737250_119737578_119737771_119742152_119742294_119747092_119747211_119748138_119748280_119748661_119748821_119756377_119756497_119762320_119762425_119763041_119763226_119764979_119765091_119775749_119775856_119777862_119777978_119779367_119779493_119781939_119782045_119783377_119783485_119785081_119785210_119785744_119785832_119786728_119786846_119787245_119787376_119788239
transcript_27277.known	chr11	+	3662	14	FSM	ENSMUSG00000025583.16	ENSMUST00000147772.8	3662	14	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_8	9.2863710022017	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2170	False	NA	NA	False	ACTAAA	-25	NA	119493840	119735865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119494798_119548489_119548593_119562103_119562187_119615835_119615995_119634692_119634840_119647064_119647241_119671368_119671429_119689594_119689696_119690147_119690293_119702770_119702847_119707903_119708006_119712486_119712571_119713736_119713848_119734507
transcript_27278.known	chr11	+	2569	13	FSM	ENSMUSG00000025583.16	ENSMUST00000125583.8	2569	13	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_8	9.39081998549647	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTCTGGTTACCAAACCA	2060	False	NA	NA	False	AGTAAA	-17	NA	119493730	119714002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119494798_119548489_119548593_119562103_119562187_119615835_119615995_119634692_119634840_119647064_119647241_119671368_119671429_119689594_119689696_119690147_119690293_119702770_119702847_119707903_119708006_119712486_119712571_119713736
transcript_2728.known	chr1	-	815	3	FSM	ENSMUSG00000026202.14	ENSMUST00000187103.2	815	3	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	30.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGCTGTAGTGGAGCCCTA	NA	False	NA	NA	False	AAAAAG	-43	NA	75195887	75193078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75193620_75193855_75194079_75195836
transcript_27284.nic	chr11	+	2619	3	ISM	ENSMUSG00000025583.16	ENSMUST00000130049.8	3384	7	-26	109491	-26	-109491	5prime_fragment	FALSE	canonical	3	106	junction_1	3.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGAATAAGTCTGGTCC	2124	False	NA	NA	False	AATAAA	-3	NA	119493794	119563616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_119494798_119548489_119548593_119562103
transcript_27286.known	chr11	+	1557	8	FSM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_5	11.6303613925986	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTTAGTGTCTTGGT	NA	False	NA	18	True	ATTAAA	-33	NA	119804635	119810374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809_119808865_119809432
transcript_27288.nic	chr11	+	2154	7	ISM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	-31	2	-31	-2	intron_retention	FALSE	canonical	3	311	junction_5	12.2667119564381	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGAGTTTAGTGTCTTG	NA	False	NA	16	True	ATTAAA	-31	NA	119804604	119810372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809
transcript_27293.known	chr11	+	2442	15	FSM	ENSMUSG00000025372.17	ENSMUST00000106233.2	2442	15	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_13	13.1158495799579	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	10	True	AATAAA	-16	NA	119833588	119897608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119893863_119893912_119897184
transcript_27294.known	chr11	+	3518	14	FSM	ENSMUSG00000025372.17	ENSMUST00000075180.12	3518	14	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_13	10.9230769230769	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTTGGTCTGTGCCTCC	NA	False	NA	NA	False	AATAAA	-17	NA	119833588	119893447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119891899
transcript_27295.known	chr11	+	2394	14	FSM	ENSMUSG00000025372.17	ENSMUST00000026436.10	2394	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_13	8.07215976759687	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	10	True	AATAAA	-16	NA	119833588	119897608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119897184
transcript_27297.known	chr11	+	4005	13	FSM	ENSMUSG00000025372.17	ENSMUST00000106231.8	4005	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_12	7.16278964898143	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTTGGTCTGTGCCTCC	NA	False	NA	NA	False	AATAAA	-17	NA	119833588	119893447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377
transcript_273.known	chr1	+	2547	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATGTTTTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	4928036	4968128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
transcript_2730.known	chr1	+	1570	7	FSM	ENSMUSG00000026201.13	ENSMUST00000135484.8	1570	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	83.8424448328861	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATATTTTAGGTCAATG	NA	False	NA	6	True	AATAAA	-14	NA	75187519	75190883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75187644_75187883_75188059_75188568_75188789_75189243_75189651_75189776_75189873_75190219_75190342_75190457
transcript_27301.known	chr11	-	5177	14	FSM	ENSMUSG00000025375.16	ENSMUST00000103019.2	5177	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.44729905555591	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAACAGCCTGTGTGCT	5204	False	NA	NA	False	NA	NA	NA	119932608	119898145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119899271_119900100_119900302_119900432_119900581_119900659_119903253_119903548_119903699_119904273_119904396_119904475_119904561_119906284_119906419_119906931_119907020_119907138_119907258_119907553_119907634_119909570_119909719_119912227_119912362_119932558
transcript_27302.known	chr11	-	3578	26	FSM	ENSMUSG00000039781.15	ENSMUST00000106227.8	3578	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	26.0287840668749	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTCACCTGCTTGTCT	NA	False	NA	-9	True	AGTAAA	-27	NA	119977653	119955255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119955536_119955610_119955672_119956213_119956378_119956463_119956642_119956736_119956880_119957519_119957595_119957746_119957865_119957955_119958064_119958771_119958974_119959523_119959627_119961114_119961232_119961310_119961437_119961617_119961729_119962184_119962362_119962702_119962886_119963235_119963331_119963663_119963803_119963953_119964071_119964566_119964685_119966389_119966537_119966914_119967029_119967744_119967867_119968152_119968268_119972069_119972165_119974621_119974816_119977477
transcript_2732.known	chr1	+	3066	9	FSM	ENSMUSG00000026203.17	ENSMUST00000188931.7	3066	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	4.89738450603993	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCGGTGGCCTGTGTT	2178	False	NA	2	True	AATAAA	-12	NA	75213049	75222332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101
transcript_27322.known	chr11	-	2770	13	FSM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_11	8.42944574426786	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119989557	119981356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987406_119987501_119987703_119987796_119988334_119988408_119989451
transcript_27328.nic	chr11	-	2831	12	NIC	ENSMUSG00000025377.15	novel	2770	13	NA	NA	1	0	intron_retention	FALSE	canonical	3	76	junction_10	8.80176541269791	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119989525	119981356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_119982839_119983676_119983812_119984070_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987406_119987501_119987703_119987796_119988334_119988408_119989451
transcript_2733.known	chr1	-	3554	23	FSM	ENSMUSG00000026204.16	ENSMUST00000027404.12	3554	23	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_15	2.05553073719909	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGCTGTCTGTCATGCTT	NA	False	NA	9	True	AATAAA	-42	NA	75240857	75223670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75224265_75224480_75224555_75224745_75224811_75225369_75225424_75228394_75228562_75228899_75229020_75229111_75229190_75229414_75229489_75229655_75229804_75229903_75230105_75230566_75230786_75231228_75231294_75231422_75231503_75231768_75231856_75232270_75232546_75233486_75233525_75233936_75234069_75234588_75234941_75235022_75235282_75237214_75237312_75238670_75238785_75238966_75239018_75240647
transcript_27334.known	chr11	+	781	3	FSM	ENSMUSG00000078572.4	ENSMUST00000106223.4	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_2	30.5	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGCTGGAGAGATTGT	NA	False	NA	NA	False	AATAAA	-18	NA	119989753	119991531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119989892_119989973_119990085_119990999
transcript_27335.known	chr11	+	427	3	FSM	ENSMUSG00000078572.4	ENSMUST00000185558.2	427	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	466	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGATGATTTAATTTTG	NA	False	NA	19	True	NA	NA	NA	119989769	119991189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119989892_119989973_119990089_119990999
transcript_27336.known	chr11	+	401	2	FSM	ENSMUSG00000078572.4	ENSMUST00000186913.2	401	2	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAAGGAACTGGTCTCTC	NA	False	NA	6	True	TATAAA	-6	NA	119989924	119991240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_119990085_119990999
transcript_27339.known	chr11	-	4578	17	FSM	ENSMUSG00000061306.17	ENSMUST00000103018.11	4578	17	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	179.74077471111	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTATGTGTATTA	4996	False	NA	NA	False	ATTAAA	-5	NA	120042172	119994785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119996863_119997259_119997437_119999292_119999317_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_27347.known	chr11	-	4052	17	FSM	ENSMUSG00000061306.17	ENSMUST00000179094.8	4052	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	187.660889305683	830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	5030	False	NA	-12	True	AATAAA	-12	NA	120042138	119995277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119996863_119997259_119997437_120000197_120000222_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_27362.nic	chr11	-	4018	16	NIC	ENSMUSG00000061306.17	novel	4052	17	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	214.711837897526	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	4946	False	NA	-12	True	AATAAA	-12	NA	120042222	119995277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_119996863_119997259_119997437_120000197_120000222_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120041805
transcript_27363.nic	chr11	-	4094	16	NIC	ENSMUSG00000061306.17	novel	4052	17	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	217.940623922103	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	4942	False	NA	-12	True	AATAAA	-12	NA	120042226	119995277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_119996863_119997259_119997437_120000197_120000222_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120038546_120038665_120041805
transcript_27367.known	chr11	-	4554	16	FSM	ENSMUSG00000061306.17	ENSMUST00000045402.14	4554	16	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	66.2227218474814	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTATGTGTATTA	4996	False	NA	NA	False	ATTAAA	-5	NA	120042172	119994785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_27372.nic	chr11	-	3953	15	NIC	ENSMUSG00000061306.17	novel	4052	17	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	223.456211753955	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	4965	False	NA	-12	True	AATAAA	-12	NA	120042203	119995277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_119996863_119997259_119997437_120000197_120000222_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120041805
transcript_27394.known	chr11	-	1947	11	FSM	ENSMUSG00000061306.17	ENSMUST00000053692.9	1947	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	172.084979007466	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTTGGCTTTGTTTTTT	4996	False	NA	NA	False	NA	NA	NA	120042172	120014669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120015218_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_2740.known	chr1	-	2510	15	FSM	ENSMUSG00000026209.16	ENSMUST00000185797.7	2510	15	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGTTTGAAATGGATTG	NA	False	NA	NA	False	TATAAA	-15	NA	75294303	75284539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
transcript_27401.known	chr11	-	1672	11	FSM	ENSMUSG00000061306.17	ENSMUST00000076697.13	1672	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	172.084979007466	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAATGCTGCCTTTCCTT	4996	False	NA	NA	False	AATAAA	-17	NA	120042172	120009697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120009971_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_27405.known	chr11	-	1588	2	FSM	ENSMUSG00000043993.7	ENSMUST00000139014.2	1588	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGCAGTATTGCTACCG	NA	False	NA	1	True	NA	NA	NA	120122411	120120627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120122125_120122320
transcript_27406.known	chr11	-	1189	7	FSM	ENSMUSG00000062825.16	ENSMUST00000131103.9	1189	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	2986.4483365139	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCAGGAGTATGATGAGT	NA	False	NA	NA	False	NA	NA	NA	120239315	120237270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238317_120238363_120238461_120238702_120238794_120238924_120239250
transcript_27413.known	chr11	-	1952	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	0	0	0	0	multi-exon	TRUE	canonical	3	5636	junction_4	454.292680988809	18880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239368	120236515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
transcript_27431.known	chr11	-	807	3	FSM	ENSMUSG00000062825.16	ENSMUST00000156343.2	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	5636	junction_1	631	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGACTCTGGTGACGGG	NA	False	NA	NA	False	NA	NA	NA	120239311	120238084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120238702_120238794_120238924_120239250
transcript_27432.known	chr11	-	449	2	FSM	ENSMUSG00000062825.16	ENSMUST00000144868.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	3	6898	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGTGGCTCCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	120239321	120238545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120238924_120239250
transcript_27434.known	chr11	-	1827	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	0	0	0	0	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTGTTTTTCTGGTTTG	NA	False	NA	-22	True	AATAAA	-17	NA	120238917	120236516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
transcript_27435.known	chr11	+	619	2	FSM	ENSMUSG00000043644.5	ENSMUST00000143813.2	619	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGAGCTCAACGTCTAAA	2995	False	NA	NA	False	AATAAA	-19	NA	120239503	120242016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120239689_120241582
transcript_27437.known	chr11	-	3193	10	FSM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_4	19.8612470857816	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTGTGTTGTGCTCTG	NA	False	NA	-3	True	NA	NA	NA	120269590	120260387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269153_120269273_120269367
transcript_27439.nnic	chr11	-	3583	18	NNC	ENSMUSG00000039703.16	novel	4121	17	NA	NA	-50	-423	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.175239093524	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTTTGAGTTACTCTT	NA	False	NA	-4	True	AAGAAA	-20	NA	120328584	120271618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_120272930_120273094_120273453_120274122_120274226_120275368_120275486_120276595_120276692_120280193_120280266_120295031_120295193_120299598_120299726_120300437_120300510_120302483_120302571_120304385_120304566_120307082_120307207_120309070_120309166_120309894_120309944_120312190_120312368_120319349_120319463_120323873_120323955_120328324
transcript_27441.known	chr11	-	4121	17	FSM	ENSMUSG00000039703.16	ENSMUST00000044271.15	4121	17	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_10	42.5235229020362	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGCTCCCAGTGCATT	NA	False	NA	-8	True	AATAAA	-16	NA	120328534	120271195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120273453_120274122_120274226_120275368_120275486_120276595_120276692_120280193_120280266_120295031_120295193_120299598_120299726_120300437_120300510_120302483_120302571_120304385_120304566_120307082_120307207_120309070_120309166_120309894_120309944_120312190_120312368_120319349_120319463_120323873_120323955_120328324
transcript_27449.known	chr11	-	813	2	FSM	ENSMUSG00000039670.3	ENSMUST00000044007.3	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCAGGGGCTTTTGTGT	959	False	NA	-6	True	AATAAA	-18	NA	120348894	120347431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120347989_120348638
transcript_27450.known	chr11	-	372	2	FSM	ENSMUSG00000039670.3	ENSMUST00000137632.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTCTACCAGGATGGCG	9	True	NA	NA	False	NA	NA	NA	120348762	120347710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120347989_120348668
transcript_27457.known	chr11	+	2778	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGAGAACATTCTTGTT	208	False	NA	NA	False	AATAAA	-20	NA	120348940	120355184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
transcript_27465.known	chr11	+	336	3	FSM	ENSMUSG00000049957.15	ENSMUST00000175970.8	336	3	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	68	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCAAGCAAAGGAAGGGGG	235	False	NA	NA	False	NA	NA	NA	120348967	120350937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120349105_120349437_120349572_120350872
transcript_27466.known	chr11	+	375	2	FSM	ENSMUSG00000049957.15	ENSMUST00000140308.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGAGTGCAGGGTATGGG	231	False	NA	NA	False	NA	NA	NA	120348963	120349671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120349105_120349437
transcript_27467.known	chr11	-	911	5	FSM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	70.9048658414922	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTCCCACCAAGAAGTTG	NA	False	NA	62	True	NA	NA	NA	120358426	120356263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358067_120358188
transcript_27472.known	chr11	-	429	4	FSM	ENSMUSG00000057594.13	ENSMUST00000150688.2	429	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	81.6999932000541	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGACCATAGGGTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120358259	120356740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120356926_120357479_120357594_120358007_120358067_120358188
transcript_27480.known	chr11	+	2900	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_14	47.8204313112466	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8182	False	NA	13	True	AATAAA	-14	NA	120358460	120374805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
transcript_27483.nic	chr11	+	3163	21	ISM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	24	0	24	0	intron_retention	FALSE	canonical	3	286	junction_14	46.7074940453885	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8206	False	NA	13	True	AATAAA	-14	NA	120358484	120374805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840
transcript_27497.known	chr11	+	1316	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	721	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAGTGTAACCCTGGCC	8955	False	NA	NA	False	NA	NA	NA	120375438	120379891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
transcript_27501.known	chr11	+	2023	11	FSM	ENSMUSG00000025792.10	ENSMUST00000026899.4	2023	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_8	8.74356906531881	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGGGGGCTGGCAGATC	NA	False	NA	23	True	AATAAA	-37	NA	120382665	120390013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120387933_120388209_120388288_120388745_120388803_120388896
transcript_27502.known	chr11	+	1658	10	FSM	ENSMUSG00000025792.10	ENSMUST00000144706.8	1658	10	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	8.28355503094036	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTCTGCTTACCAAATG	NA	False	NA	NA	False	NA	NA	NA	120382713	120389419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120388288_120388745_120388803_120388896
transcript_27504.known	chr11	-	1205	5	FSM	ENSMUSG00000061111.9	ENSMUST00000034913.5	1205	5	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	30.2861354418156	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCATGGCAGTCTGT	NA	False	NA	-24	True	AATAAA	-17	NA	120440553	120433713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120434575_120434729_120434832_120435506_120435626_120435702_120435755_120440482
transcript_27505.known	chr11	-	1256	4	FSM	ENSMUSG00000061111.9	ENSMUST00000135515.2	1256	4	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_3	32.7244387100664	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCATGGCAGTCTGT	NA	False	NA	-24	True	AATAAA	-17	NA	120440527	120433713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120434575_120434729_120434832_120435506_120435755_120440482
transcript_27507.known	chr11	-	2861	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	0	0	0	0	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	5007	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGCTGCTTTATTTT	3367	False	NA	-4	True	AATAAA	-21	NA	120464079	120451123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
transcript_27509.known	chr11	-	2150	6	FSM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	1338.58961597646	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	-15	True	AATAAA	-17	NA	120472206	120468934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120471815
transcript_2751.known	chr1	-	1571	15	FSM	ENSMUSG00000026209.16	ENSMUST00000113605.10	1571	15	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_14	185.094639334056	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75293589	75285208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
transcript_27511.known	chr11	-	1867	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	0	0	0	0	multi-exon	TRUE	canonical	3	3168	junction_5	160.793780974265	2183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472450	120468929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
transcript_2752.known	chr1	+	3028	9	FSM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	8.9154010005159	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATGAGGCCATGATAACA	NA	False	NA	NA	False	AATAAA	-13	NA	75336972	75345223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75337637_75338801_75338863_75338956_75339053_75339208_75339371_75339537_75339664_75340114_75340336_75341971_75342016_75343403_75343487_75343652
transcript_2753.nic	chr1	+	1671	8	ISM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	1659	863	-42	-863	3prime_fragment	FALSE	canonical	3	24	junction_7	3.01695886884898	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCATGGCCCTGTCATCT	NA	False	NA	4	True	AATAAA	-15	NA	75338631	75344360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_75338863_75338956_75339053_75339208_75339371_75339537_75339664_75340114_75340336_75341971_75342016_75343403_75343487_75343652
transcript_27531.known	chr11	-	3527	6	FSM	ENSMUSG00000025134.3	ENSMUST00000026125.3	3527	6	0	0	0	0	multi-exon	FALSE	canonical	3	3672	junction_5	281.391257859941	2049	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATCACACCTCGTCTCT	4306	False	NA	3	True	AATAAA	-29	NA	120489191	120482946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460_120488593_120488930
transcript_27537.known	chr11	+	3229	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	0	0	0	0	multi-exon	FALSE	canonical	3	903	junction_1	470.5	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCACTTTTGATCATGGT	3900	False	NA	NA	False	NA	NA	NA	120489246	120499024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120489431_120490067_120490195_120496106
transcript_27539.known	chr11	+	962	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_1	419	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAAACCTTCATCGTA	4011	False	NA	129	True	AATAAA	-17	NA	120489357	120496602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120489697_120490067_120490195_120496106
transcript_27545.known	chr11	+	542	2	FSM	ENSMUSG00000044034.12	ENSMUST00000106195.3	542	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTAAGGGTTGCTGGA	1208	False	NA	NA	False	AATAAA	-14	NA	120499302	120499919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120499566_120499640
transcript_27547.known	chr11	-	1881	14	FSM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_7	79.5574296680368	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508762	120500912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_27548.known	chr11	-	1486	13	FSM	ENSMUSG00000025137.16	ENSMUST00000106188.4	1486	13	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_7	91.5034911295131	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGAGGCGTGTTGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	120508751	120501242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_2755.known	chr1	+	1692	14	FSM	ENSMUSG00000033021.17	ENSMUST00000113584.8	1692	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	88.7478310427522	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412586	75419817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75412656_75412789_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_27550.nic	chr11	-	2476	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-32	0	intron_retention	FALSE	canonical	3	48	junction_6	110.81174601799	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508794	120500912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_27551.nic	chr11	-	2292	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-32	0	intron_retention	FALSE	canonical	3	184	junction_6	81.3758000472704	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508794	120500912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_27558.nic	chr11	-	2238	12	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-32	0	intron_retention	FALSE	canonical	3	99	junction_6	93.9507520015295	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508794	120500912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_27559.nic	chr11	-	2720	12	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-32	0	intron_retention	FALSE	canonical	3	226	junction_6	61.2106510474516	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508794	120500912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_2756.nic	chr1	+	1707	14	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	-2	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_1	88.7478310427522	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412602	75419817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_75412656_75412758_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_27570.nic	chr11	-	2533	11	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-32	0	intron_retention	FALSE	canonical	3	99	junction_5	98.1063198779773	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508794	120500912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_27571.nic	chr11	-	2964	11	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-4	0	intron_retention	FALSE	canonical	3	226	junction_5	62.8630256987365	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508743	120500912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_27577.known	chr11	-	513	3	FSM	ENSMUSG00000025137.16	ENSMUST00000126148.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_2	25	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCCCAGAGCAGTGGCA	NA	False	NA	NA	False	NA	NA	NA	120508736	120506001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120506279_120506674_120506764_120508589
transcript_27579.known	chr11	-	597	2	FSM	ENSMUSG00000025137.16	ENSMUST00000160059.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAAGCATAAGGGGCCC	NA	False	NA	NA	False	NA	NA	NA	120508695	120506272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120506764_120508589
transcript_2758.known	chr1	+	1539	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	48.5514475124641	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412573	75419818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_27581.known	chr11	-	1727	10	FSM	ENSMUSG00000025138.15	ENSMUST00000080202.12	1727	10	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_9	11.3376897945103	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515840	120509197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
transcript_27587.known	chr11	-	1925	8	FSM	ENSMUSG00000025138.15	ENSMUST00000133625.8	1925	8	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_7	11.9965981572669	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTGTCCCGATGACT	NA	False	NA	-3	True	ATTAAA	-13	NA	120515825	120509199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120509876_120510988_120511096_120511249_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
transcript_27591.known	chr11	-	840	4	FSM	ENSMUSG00000051510.14	ENSMUST00000106181.8	840	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	166.65399951863	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCACTGGGCTGAGCCC	9125	False	NA	NA	False	NA	NA	NA	120521462	120519966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120520563_120520643_120520708_120520811_120520843_120521313
transcript_27592.known	chr11	-	1104	3	FSM	ENSMUSG00000051510.14	ENSMUST00000106182.8	1104	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	164.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGCGCTGTGGGAGT	9882	False	NA	NA	False	NA	NA	NA	120521623	120519832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120520563_120520643_120520708_120521313
transcript_27594.known	chr11	-	4923	3	FSM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	28	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGGTATTTCTTTGAA	7358	False	NA	-1	True	AATAAA	-16	NA	120524426	120515942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120520563_120520643_120520708_120524187
transcript_27595.known	chr11	-	732	3	FSM	ENSMUSG00000051510.14	ENSMUST00000106180.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	175.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGGCAGCCCCGTCCCT	9613	False	NA	NA	False	NA	NA	NA	120520974	120520057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120520563_120520643_120520708_120520811
transcript_27597.nnic	chr11	-	1682	3	NNC	ENSMUSG00000051510.14	novel	4923	3	NA	NA	11	439	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	175	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGCAGAGTATTTATAAAA	7413	False	NA	NA	False	ATTAAA	-34	NA	120524371	120519393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_120520563_120520643_120520708_120523922
transcript_2760.nic	chr1	+	1836	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	3	0	intron_retention	FALSE	canonical	3	82	junction_1	58.385869199852	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412576	75419817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_27606.nic	chr11	-	1571	9	NIC	ENSMUSG00000025140.16	novel	2914	8	NA	NA	-6	-1056	combination_of_known_junctions	FALSE	canonical	2	46	junction_1	319.603269695415	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTAGACTACTTCCTGCT	NA	False	NA	-10	True	NA	NA	NA	120534601	120527593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120528061_120531025_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
transcript_27616.known	chr11	-	1861	8	FSM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_7	93.9428832116752	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534574	120530241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
transcript_27617.nic	chr11	-	1862	8	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	343.012048339592	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534598	120530241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534528
transcript_27619.nic	chr11	-	1749	7	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	364.341148132107	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534591	120530241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120534505
transcript_27645.nnic	chr11	-	2336	13	NNC	ENSMUSG00000042988.11	novel	2012	12	NA	NA	-885	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	31.8612443085465	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCTCACCCTGAAC	9819	False	NA	NA	False	ATTAAA	-21	NA	120552886	120544613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820_120551192_120551946_120552181_120552755
transcript_27652.known	chr11	-	2012	12	FSM	ENSMUSG00000042988.11	ENSMUST00000106178.9	2012	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	31.1782399219087	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCTCACCCTGAAC	9573	False	NA	NA	False	ATTAAA	-21	NA	120551655	120544613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820_120551192_120551614
transcript_27657.nnic	chr11	-	2664	11	NNC	ENSMUSG00000042988.11	novel	2212	11	NA	NA	38	0	intron_retention	FALSE	canonical	2	13	junction_5	31.3521929057602	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCTCACCCTGAAC	9265	False	NA	NA	False	ATTAAA	-21	NA	120551963	120544613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547499_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820
transcript_27661.known	chr11	-	2212	11	FSM	ENSMUSG00000042988.11	ENSMUST00000106177.8	2212	11	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_10	9.96042167782067	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCTCACCCTGAAC	9796	False	NA	NA	False	ATTAAA	-21	NA	120551432	120544613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820
transcript_27678.nnic	chr11	-	2551	10	NIC	ENSMUSG00000042988.11	novel	2212	11	NA	NA	38	0	intron_retention	FALSE	canonical	3	11	junction_4	32.0685993103596	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCTCACCCTGAAC	9265	False	NA	NA	False	ATTAAA	-21	NA	120551963	120544613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120548318_120548422_120548711_120548771_120549156_120549218_120549475_120549572_120549650_120549704_120550820
transcript_27694.known	chr11	+	1820	16	FSM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	0	0	0	0	multi-exon	FALSE	canonical	3	887	junction_3	62.8477525453377	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563817	120600273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_277.known	chr1	+	2507	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	0	0	0	0	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4878045	4916962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
transcript_27700.nic	chr11	+	2268	16	NIC	ENSMUSG00000025142.19	novel	870	8	NA	NA	77	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	243.577411833601	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120564000	120600273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_120564628_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_27704.nic	chr11	+	1890	16	NIC	ENSMUSG00000025142.19	novel	870	8	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	238.262376383683	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120564191	120600273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_120564441_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_27710.known	chr11	+	1690	15	FSM	ENSMUSG00000025142.19	ENSMUST00000106158.9	1690	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_10	252.602010107212	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120563881	120600270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_27720.nic	chr11	+	2169	14	NIC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	-39	0	intron_retention	FALSE	canonical	3	887	junction_3	62.6465618847222	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563759	120600273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120600073_120600169
transcript_27736.known	chr11	+	489	5	FSM	ENSMUSG00000025142.19	ENSMUST00000153346.8	489	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	429.686222725374	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTTGGCCGCCAGAC	NA	False	NA	NA	False	NA	NA	NA	120564229	120577527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120564389_120564865_120564922_120568336_120568452_120569245_120569347_120577469
transcript_27737.nnic	chr11	+	571	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	2635	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	436.370542085508	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120595974	120600273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_+_120596144_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_27741.known	chr11	+	505	2	FSM	ENSMUSG00000025142.19	ENSMUST00000169964.2	505	2	0	0	0	0	multi-exon	FALSE	canonical	3	898	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACAGAGAGCCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	120563798	120565172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120563997_120564865
transcript_27742.known	chr11	+	2061	2	FSM	ENSMUSG00000025142.19	ENSMUST00000171700.2	2061	2	0	0	0	0	multi-exon	FALSE	canonical	1	28	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120563851	120566808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120563970_120564865
transcript_27744.known	chr11	-	873	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	397.451380674417	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604558	120601767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603539_120604518
transcript_27745.known	chr11	-	606	5	FSM	ENSMUSG00000025144.18	ENSMUST00000055424.13	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	137.848422189012	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604564	120601767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120604518
transcript_27749.nnic	chr11	-	598	4	NIC	ENSMUSG00000025144.18	novel	692	4	NA	NA	-45	0	combination_of_known_splicesites	FALSE	canonical	3	126	junction_3	359.512942125253	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604609	120601768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120602133_120602215_120602305_120602528_120602583_120604518
transcript_27750.known	chr11	-	692	4	FSM	ENSMUSG00000025144.18	ENSMUST00000026137.8	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	156.895577446346	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604564	120601768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602722_120604518
transcript_27757.nic	chr11	+	2650	18	NIC	ENSMUSG00000025145.14	novel	2492	18	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	12.9044934637937	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTCCAGTTCCTTTCT	6011	False	NA	NA	False	GATAAA	-1	NA	120604697	120611954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_120604880_120604993_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
transcript_27758.known	chr11	+	2492	18	FSM	ENSMUSG00000025145.14	ENSMUST00000026139.14	2492	18	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_12	7.88805763716247	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTCCAGTTCCTTTCT	6064	False	NA	NA	False	GATAAA	-1	NA	120604750	120611954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
transcript_27766.known	chr11	+	2390	17	FSM	ENSMUSG00000025145.14	ENSMUST00000145781.8	2390	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	14.0844273490263	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTCTCGTCCAGTTCC	6090	False	NA	NA	False	AATACA	-19	NA	120604776	120611949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
transcript_27778.known	chr11	+	589	6	FSM	ENSMUSG00000018012.12	ENSMUST00000142229.2	589	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	23.4486673395313	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCCTTGCCTGGCCAGC	3901	False	NA	NA	False	AAAAAG	-25	NA	120612398	120614432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120612447_120613056_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
transcript_27779.known	chr11	+	1076	6	FSM	ENSMUSG00000018012.12	ENSMUST00000018156.12	1076	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	12.4739729036101	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	3798	False	NA	14	True	AATAAA	-14	NA	120612295	120614795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120612468_120613056_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
transcript_27782.known	chr11	+	717	5	FSM	ENSMUSG00000018012.12	ENSMUST00000134322.2	717	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	3.80788655293195	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCTCCAGTGAAAAAGCCA	4342	False	NA	NA	False	NA	NA	NA	120612839	120614391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
transcript_27785.known	chr11	-	892	8	FSM	ENSMUSG00000039450.12	ENSMUST00000026144.5	892	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	11.7438650940369	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	9984	False	NA	-4	True	AATAAA	-37	NA	120618107	120616224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
transcript_27787.known	chr11	-	910	7	FSM	ENSMUSG00000039450.12	ENSMUST00000125242.8	910	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	12.2202018532156	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGTGTGCTGATTCTC	6915	False	NA	-30	True	AATAAA	-11	NA	120618070	120616250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617138_120617236_120617392_120617824_120617923_120618003
transcript_27789.known	chr11	-	830	7	FSM	ENSMUSG00000039450.12	ENSMUST00000106148.10	830	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	29.9035486560077	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	6916	False	NA	-4	True	AATAAA	-37	NA	120618069	120616224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120616434_120616563_120616723_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
transcript_2779.known	chr1	-	3065	5	FSM	ENSMUSG00000032997.17	ENSMUST00000094818.4	3065	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	56.2777709224521	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAATGAGTGGAAACTGG	NA	False	NA	NA	False	AATAAA	-14	NA	75455951	75451218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75452871_75453203_75453384_75453888_75454463_75454913_75455057_75455435
transcript_27790.known	chr11	-	914	7	FSM	ENSMUSG00000039450.12	ENSMUST00000122883.2	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	12.5786415094088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCCGCCCCTGCAATAAA	6930	False	NA	-60	True	NA	NA	NA	120618055	120616280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
transcript_27794.known	chr11	+	1626	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTACAAGAGTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120653600_120655200
transcript_27798.nnic	chr11	-	2184	9	NNC	ENSMUSG00000025158.8	novel	2118	8	NA	NA	-198	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	56.9868405862266	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGGCTCCTCTTGTCA	NA	False	NA	-5	True	AGTAAA	-18	NA	120675231	120671572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_120672035_120672167_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
transcript_2780.known	chr1	-	2455	4	FSM	ENSMUSG00000032997.17	ENSMUST00000138683.2	2455	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	53.0722777603022	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATAATGAGTGGAAACTG	NA	False	NA	NA	False	AATAAA	-13	NA	75455763	75451219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75452871_75453203_75453384_75453888_75454185_75455435
transcript_27800.nnic	chr11	-	2177	9	NNC	ENSMUSG00000025158.8	novel	2118	8	NA	NA	-198	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	56.9868405862266	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCCTAGTGTGGCTCCT	NA	False	NA	-12	True	AGTAAA	-11	NA	120675231	120671579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_120672004_120672136_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
transcript_27802.known	chr11	-	2118	8	FSM	ENSMUSG00000025158.8	ENSMUST00000026156.8	2118	8	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	23.1137382947714	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGTGGCTCCTCTTGTC	NA	False	NA	-6	True	AGTAAA	-17	NA	120675033	120671573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
transcript_27804.nnic	chr11	-	2095	8	NNC	ENSMUSG00000025158.8	novel	2118	8	NA	NA	-198	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.2738781864983	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGGCTCCTCTTGTCA	NA	False	NA	-5	True	AGTAAA	-18	NA	120675231	120671572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_120672035_120672167_120672730_120672804_120672891_120673208_120673375_120673832_120673987_120674093_120674197_120674560_120674610_120674718
transcript_27808.nnic	chr11	-	2553	7	NNC	ENSMUSG00000025158.8	novel	2467	6	NA	NA	-198	-1	intron_retention	FALSE	canonical	0	0	junction_1	65.2090654910973	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGGCTCCTCTTGTCA	NA	False	NA	-5	True	AGTAAA	-18	NA	120675231	120671572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_120672035_120672167_120672730_120672804_120672891_120673208_120673987_120674093_120674197_120674560_120674610_120674718
transcript_2781.known	chr1	-	2892	4	FSM	ENSMUSG00000032997.17	ENSMUST00000079205.14	2892	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	2.16024689946929	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGGAAACTGGTAATTT	NA	False	NA	NA	False	AATAAA	-20	NA	75455915	75451212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75452871_75453203_75453384_75453888_75454463_75455435
transcript_27811.known	chr11	-	2467	6	FSM	ENSMUSG00000025158.8	ENSMUST00000123273.2	2467	6	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_3	12.2081939696255	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGGCTCCTCTTGTCAT	NA	False	NA	-4	True	AGTAAA	-19	NA	120675011	120671571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120672730_120672804_120672891_120673208_120673987_120674093_120674197_120674560_120674610_120674718
transcript_27815.known	chr11	+	1827	14	FSM	ENSMUSG00000025156.18	ENSMUST00000116305.8	1827	14	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_1	155.049677093711	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1424	False	NA	2	True	ATTAAA	-19	NA	120675130	120679928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
transcript_27817.known	chr11	+	2000	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	255.452956564905	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1634	False	NA	2	True	ATTAAA	-19	NA	120675340	120679928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
transcript_27819.known	chr11	+	1925	13	FSM	ENSMUSG00000025156.18	ENSMUST00000100134.10	1925	13	0	0	0	0	multi-exon	TRUE	canonical	3	682	junction_1	150.079122650539	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	1394	False	NA	-3	True	ATTAAA	-14	NA	120675100	120679923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
transcript_27825.nic	chr11	+	2168	13	ISM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	-100	5	-100	0	intron_retention	FALSE	canonical	3	238	junction_1	261.317003635219	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	1534	False	NA	-3	True	ATTAAA	-14	NA	120675240	120679923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
transcript_2783.known	chr1	-	4131	12	FSM	ENSMUSG00000026211.19	ENSMUST00000155084.8	4131	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	17.2564516621159	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGTATTTATTTTTTG	NA	False	NA	NA	False	CATAAA	-19	NA	75482285	75467177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75468102_75469149_75469438_75469513_75469790_75470428_75470702_75473651_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
transcript_2785.known	chr1	-	3379	9	FSM	ENSMUSG00000026211.19	ENSMUST00000113565.3	3379	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	8.70254991367473	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCATGGTAAATAAGTTCAA	NA	False	NA	NA	False	AATAAA	-26	NA	75483005	75472979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75473269_75473651_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
transcript_27867.nic	chr11	-	2157	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	197.871304777721	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGCAGAGATCTCTAG	NA	False	NA	-19	True	AATAAA	-14	NA	120687267	120680029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686764
transcript_27868.known	chr11	-	1909	14	FSM	ENSMUSG00000025155.16	ENSMUST00000167023.8	1909	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_13	260.320262471546	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGAGATCTCTAGTG	NA	False	NA	-17	True	AATAAA	-16	NA	120687221	120680027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686968
transcript_27869.nic	chr11	-	1960	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	-121	0	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	178.060258399514	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGCAGAGATCTCTAG	NA	False	NA	-19	True	AATAAA	-14	NA	120687350	120680029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
transcript_2787.nic	chr1	-	3911	8	ISM	ENSMUSG00000026211.19	ENSMUST00000155084.8	4131	12	-870	5803	-59	0	5prime_fragment	FALSE	canonical	3	33	junction_3	4.13546137889432	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCATGGTAAATAAGTTCA	NA	False	NA	NA	False	AATAAA	-25	NA	75483155	75472980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
transcript_2789.known	chr1	+	2185	5	FSM	ENSMUSG00000051703.15	ENSMUST00000113575.9	2185	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTCTCTGCCAGAAGTC	5453	False	NA	18	True	TATAAA	-13	NA	75456175	75462337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75456530_75456836_75457042_75459212_75459789_75461018_75461222_75461490
transcript_27897.known	chr11	-	10050	43	FSM	ENSMUSG00000025153.10	ENSMUST00000055655.9	10050	43	0	0	0	0	multi-exon	TRUE	canonical	3	375	junction_39	98.8392726301593	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTAAATAACTGCTCTG	NA	False	NA	NA	False	ATTAAA	-29	NA	120715373	120696671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704867_120705302_120705590_120705837_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865_120707058_120707130_120707304_120707447_120707564_120707672_120707877_120707950_120708086_120708298_120708394_120708811_120709002_120709258_120709447_120709563_120710027_120710628_120710764_120710854_120710971_120711070_120711194_120711357_120711559_120711724_120711899_120712903_120713057_120713542_120713679_120714855
transcript_27899.known	chr11	-	8333	43	FSM	ENSMUSG00000025153.10	ENSMUST00000206589.2	8333	43	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	127.303441036656	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCCCACAATTAAACTGCA	NA	False	NA	-40	True	NA	NA	NA	120714921	120697930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704867_120705308_120705590_120705837_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865_120707058_120707130_120707304_120707447_120707564_120707672_120707877_120707950_120708086_120708298_120708394_120708811_120709002_120709258_120709447_120709563_120710027_120710628_120710764_120710854_120710971_120711070_120711194_120711357_120711559_120711724_120711899_120712903_120713057_120713542_120713679_120714855
transcript_2790.known	chr1	-	2649	5	FSM	ENSMUSG00000026211.19	ENSMUST00000145306.2	2649	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	2.12132034355964	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATAATTATACTTGT	NA	False	NA	NA	False	NA	NA	NA	75483096	75478315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
transcript_27901.known	chr11	-	3403	19	FSM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	6.51399253648882	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTCTTGTCCTACT	1471	False	NA	2	True	ATTAAA	-28	NA	120823698	120717354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120717751_120751226_120751453_120751963_120752096_120757380_120757503_120764411_120764626_120769703_120769875_120772640_120772742_120776058_120776212_120776675_120776890_120785424_120785560_120786082_120786246_120788634_120788794_120792700_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
transcript_27906.nic	chr11	-	3450	14	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	-34	51246	-34	-3983	5prime_fragment	FALSE	canonical	2	6	junction_1	7.23894791139606	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGGTACCCTTGTTC	1437	False	NA	NA	False	AGTAAA	-16	NA	120823732	120768600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_120769875_120772640_120772742_120776058_120776212_120776675_120776890_120785424_120785560_120786082_120786246_120788634_120788794_120792700_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
transcript_27908.nic	chr11	-	1440	7	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	-34	75157	-34	-27894	5prime_fragment	FALSE	canonical	3	22	junction_2	1.37436854187255	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTTACTTGTGATAAGT	1437	False	NA	NA	False	NA	NA	NA	120823732	120792511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr11_-_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
transcript_27914.nnic	chr11	-	571	2	NNC	ENSMUSG00000048445.7	novel	1164	6	NA	NA	20929	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTGTGAAGTTGTCT	4433	False	NA	-11	True	ATTAAA	-15	NA	120743568	120717367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_120717751_120743380
transcript_27917.known	chr11	-	3500	10	FSM	ENSMUSG00000025162.19	ENSMUST00000070575.14	3500	10	0	0	0	0	multi-exon	TRUE	canonical	3	176	junction_1	174.428237039028	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTCCCCTTTGTGTGG	1014	False	NA	-11	True	AATAAA	-22	NA	120881918	120852574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120854733_120855773_120855837_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
transcript_27925.known	chr11	-	1823	9	FSM	ENSMUSG00000025162.19	ENSMUST00000239115.2	1823	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	191.835052844885	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATGCTATACTTCAGCT	776	False	NA	NA	False	AATAAA	-45	NA	120882156	120849815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120850122_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
transcript_27929.known	chr11	-	3675	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTCCCCTTTGTGTGG	776	False	NA	-11	True	AATAAA	-22	NA	120882156	120852574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
transcript_2793.nnic	chr1	+	4180	26	NNC	ENSMUSG00000026213.16	novel	4458	25	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_5	15.72768260107	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGACTCTGGAAGTCAC	2734	False	NA	18	True	AATAAA	-17	NA	75498166	75513579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_75498287_75498407_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502283_75502400_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75504952_75505038_75505554_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
transcript_2795.known	chr1	+	4458	25	FSM	ENSMUSG00000026213.16	ENSMUST00000027414.16	4458	25	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	11.130538571376	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCCACTTTCTCAGTGG	2740	False	NA	NA	False	ATTAAA	-15	NA	75498172	75513979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75498287_75498407_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75504952_75505038_75505554_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
transcript_27961.known	chr11	+	4335	6	FSM	ENSMUSG00000025161.17	ENSMUST00000168579.8	4335	6	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	37.4197808652055	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCATGATGTAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	120839906	120851694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120839977_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
transcript_27966.known	chr11	+	2386	5	FSM	ENSMUSG00000025161.17	ENSMUST00000100130.10	2386	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	128.437484793186	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGCTTCCAACCTAAGT	NA	False	NA	NA	False	NA	NA	NA	120839892	120849826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120839977_120846051_120846296_120846624_120846769_120847180_120847949_120848680
transcript_27971.known	chr11	-	604	2	FSM	ENSMUSG00000025162.19	ENSMUST00000155070.2	604	2	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTTACTGCAAGACCT	1055	False	NA	NA	False	NA	NA	NA	120881877	120873682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120874170_120881760
transcript_27972.known	chr11	+	2272	6	FSM	ENSMUSG00000025161.17	ENSMUST00000070653.13	2272	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	136.383870014016	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTCTGGCCCTCATTAG	NA	False	NA	22	True	NA	NA	NA	120839305	120849601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_120839406_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
transcript_27973.known	chr11	-	982	4	FSM	ENSMUSG00000025163.7	ENSMUST00000026159.6	982	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	2.49443825784929	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTTTTTGTTGCTTT	7896	False	NA	NA	False	AATAAA	-22	NA	120930244	120927572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_120927977_120928505_120928643_120928861_120929177_120930118
transcript_27974.known	chr11	-	2046	3	FSM	ENSMUSG00000039337.4	ENSMUST00000039146.4	2046	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	13.5	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTGCAGTCTCCTCAT	NA	False	NA	0	True	AATAAA	-19	NA	121009503	121007040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_121008523_121008652_121008727_121009013
transcript_27976.known	chr11	+	1745	3	FSM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_1	1	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	26	True	AATAAA	-20	NA	121036968	121039145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_121037049_121037353_121037428_121037554
transcript_27977.known	chr11	+	406	2	FSM	ENSMUSG00000039329.9	ENSMUST00000155694.2	406	2	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGAGGCATGGCTGTACC	NA	False	NA	NA	False	NA	NA	NA	121036982	121037693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_121037049_121037353
transcript_27980.nic	chr11	+	2400	13	NIC	ENSMUSG00000039307.17	novel	2149	13	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_9	6.32620212555158	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCACCAGCAGAAACTCT	NA	False	NA	4	True	AATAAA	-20	NA	121095228	121113473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105585_121105751_121107718_121107903_121108913_121108986_121109368_121109565_121110666_121110750_121111689_121111988_121112061_121112164_121112326_121112417_121113038
transcript_27981.known	chr11	+	2149	13	FSM	ENSMUSG00000039307.17	ENSMUST00000106117.8	2149	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	4.64503916979059	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCACCAGCAGAAACTCT	NA	False	NA	4	True	AATAAA	-20	NA	121095260	121113473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105585_121105751_121107718_121107903_121108913_121108986_121109368_121109565_121110666_121110750_121111908_121111988_121112061_121112164_121112326_121112417_121113038
transcript_27997.known	chr11	-	1308	9	FSM	ENSMUSG00000025169.7	ENSMUST00000026169.7	1308	9	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	19.9483708607996	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGATCTGGGCGCTGC	NA	False	NA	-7	True	AGTAAA	-41	NA	121095537	121068416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_121068765_121074236_121074361_121085905_121086060_121087562_121087620_121088256_121088322_121090591_121090635_121091736_121091813_121093716_121093935_121095314
transcript_28.known	ERCC-00077	+	258	1	FSM	ERCC-00077A	DQ516742	258	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AATAAA	-33	NA	0	258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00077_+_0_300
transcript_280.known	chr1	+	877	8	FSM	ENSMUSG00000025903.15	ENSMUST00000150971.8	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_6	40.2700070696263	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAAATCTGATCGCC	NA	False	NA	NA	False	AATAAA	-34	NA	4878052	4911509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178
transcript_2800.known	chr1	+	4153	24	FSM	ENSMUSG00000026213.16	ENSMUST00000113553.2	4153	24	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_10	9.28136128468159	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGCTGACTCTGGAAGT	2763	False	NA	15	True	AATAAA	-14	NA	75498195	75513576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75504952_75505038_75505554_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
transcript_28001.known	chr11	+	885	8	FSM	ENSMUSG00000039307.17	ENSMUST00000128913.8	885	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	7.04794079059658	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGGCTGCCTGCCTACA	NA	False	NA	NA	False	NA	NA	NA	121095600	121110715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105585_121105751_121108913_121108986_121109368_121109565_121110666
transcript_28004.known	chr11	-	2417	7	FSM	ENSMUSG00000039294.15	ENSMUST00000038709.14	2417	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	26.4790273403101	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120135	121113413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119864
transcript_28005.nic	chr11	-	2390	7	NIC	ENSMUSG00000039294.15	novel	2417	7	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	17.7709188157381	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120128	121113413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119884
transcript_28006.known	chr11	-	2239	7	FSM	ENSMUSG00000039294.15	ENSMUST00000106115.8	2239	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	22.8284666346404	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120131	121113413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121120038
transcript_28010.known	chr11	+	4395	11	FSM	ENSMUSG00000000056.8	ENSMUST00000103015.4	4395	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	11.0295058819514	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTGTATGTGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	121128078	121146682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_121128178_121129244_121129344_121133326_121133471_121135419_121135553_121135761_121135897_121136163_121136283_121137751_121137882_121139954_121140019_121141118_121141257_121141585_121141744_121143506
transcript_28011.known	chr11	+	5029	9	FSM	ENSMUSG00000039275.10	ENSMUST00000106113.2	5029	9	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_8	36.2594815186318	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATACAGAGTATCATTGT	4662	False	NA	NA	False	AATAAA	-20	NA	121150815	121200722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_121151349_121176247_121176443_121178756_121178905_121181569_121181717_121186854_121187049_121187739_121187916_121189384_121189682_121190409_121190620_121197593
transcript_28015.nnic	chr11	-	2289	10	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_4	138.714023252567	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245273	121218049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221025_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
transcript_28019.known	chr11	-	2321	10	FSM	ENSMUSG00000025173.14	ENSMUST00000026173.13	2321	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_4	31.7350139610984	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245271	121218049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
transcript_28029.known	chr11	-	2455	2	FSM	ENSMUSG00000025173.14	ENSMUST00000127373.2	2455	2	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAAAAAAAAAACCC	NA	False	NA	NA	False	AAAAAG	-32	NA	121245227	121237852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_121240133_121245052
transcript_28030.known	chr11	+	2520	6	FSM	ENSMUSG00000039253.8	ENSMUST00000038096.8	2520	6	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_4	7.30479294709987	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAAGACTGGTATATTT	3857	False	NA	NA	False	AATAAA	-20	NA	121312226	121322114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_121312430_121315751_121315904_121316380_121316473_121317446_121317530_121319870_121319994_121320247
transcript_28036.known	chr11	+	3906	39	FSM	ENSMUSG00000039230.15	ENSMUST00000103013.10	3906	39	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	67.5521189983218	587	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCCTCTGCCTATCTC	NA	False	NA	33	True	ATTAAA	-15	NA	121342774	121507990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_121343055_121344456_121344508_121350226_121350325_121351234_121351337_121352079_121352227_121352577_121352634_121366364_121366498_121383383_121383430_121384584_121384718_121387820_121387964_121389861_121389923_121390861_121390937_121394518_121394614_121431677_121431835_121441049_121441108_121447781_121447812_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469602_121470973_121470997_121473578_121473611_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487274_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
transcript_28052.known	chr11	-	3232	3	FSM	ENSMUSG00000039238.7	ENSMUST00000092298.6	3232	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTATTCTCTAGAGTCT	NA	False	NA	NA	False	CATAAA	-21	NA	121410159	121401803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_121403326_121403452_121405059_121410055
transcript_28057.known	chr11	-	2864	13	FSM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_9	15.1867998238236	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGACTATAACATTCATA	NA	False	NA	2	True	AATAAA	-26	NA	121563979	121507022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563810
transcript_28061.nnic	chr11	-	2787	12	NIC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	2	12	junction_9	22.2443232613485	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGACTATAACATTCATA	NA	False	NA	2	True	AATAAA	-26	NA	121563967	121507022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121561695_121561796_121561882_121562000_121563810
transcript_28071.known	chr11	+	1401	4	FSM	ENSMUSG00000039208.16	ENSMUST00000036742.14	1401	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTTTTTACAAAGTTAT	633	False	NA	NA	False	NA	NA	NA	121593236	121607132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr11_+_121593622_121598555_121598942_121605522_121605583_121606562
transcript_28072.known	chr12	+	823	8	FSM	ENSMUSG00000079179.10	ENSMUST00000179924.8	823	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	75.5075344260561	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGCAATGTCAGGTTAC	NA	False	NA	NA	False	AAAACA	-17	NA	3285914	3299944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521_3291579_3297351_3297439_3299738
transcript_28076.known	chr12	-	3513	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	0	0	0	0	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTGGTTTTCAT	NA	False	NA	-2	True	TATAAA	-19	NA	3359969	3297427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
transcript_28087.known	chr12	+	4006	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	34.8934887272046	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAAGCTCTTACTTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	3285503	3291410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028
transcript_28089.known	chr12	+	812	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178331.8	812	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	69.5621225156974	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTCTCAGGACAAATTT	NA	False	NA	10	True	AATAAA	-19	NA	3285525	3288273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288063
transcript_2809.known	chr1	-	6315	18	FSM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	0	0	0	0	multi-exon	TRUE	canonical	3	112	junction_15	30.5422731607683	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAAATCTGGTTGTCTTT	NA	False	NA	-7	True	AATAAA	-19	NA	77491716	77343825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
transcript_281.known	chr1	+	930	8	FSM	ENSMUSG00000025903.15	ENSMUST00000115529.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	273.277312991617	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGGTAAGATGTAAGTG	NA	False	NA	NA	False	NA	NA	NA	4878133	4915575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4911178_4911356_4915185
transcript_28104.nic	chr12	+	4654	13	NIC	ENSMUSG00000037486.19	novel	4462	12	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	29.3399613723899	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAGAGACATTAATCAGGA	NA	False	NA	14	True	AATAAA	-13	NA	3476852	3552466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_3477213_3492473_3492557_3495451_3495455_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3546937_3549978
transcript_28105.nic	chr12	+	3163	13	NIC	ENSMUSG00000037486.19	novel	8887	12	NA	NA	8	-1452	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	29.3399613723899	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAATGAAAACAGTTCCA	NA	False	NA	NA	False	NA	NA	NA	3476891	3551014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_3477213_3492473_3492557_3500250_3500254_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3546937_3549978
transcript_28107.nic	chr12	+	5858	13	NIC	ENSMUSG00000037486.19	novel	8887	12	NA	NA	-3	-1050	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	29.3399613723899	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACACACACACAAGGAGCT	NA	False	NA	NA	False	AATAAA	-20	NA	3476880	3553698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_3477213_3492473_3492557_3500250_3500254_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3546937_3549978
transcript_28108.known	chr12	+	1483	12	FSM	ENSMUSG00000037486.19	ENSMUST00000144247.9	1483	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30.173328488354	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAACCCCAGCTGAGC	NA	False	NA	NA	False	NA	NA	NA	3476883	3546284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3477213_3492473_3492557_3495451_3495455_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224
transcript_28109.known	chr12	+	11934	11	FSM	ENSMUSG00000037486.19	ENSMUST00000092003.12	11934	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	34.3396272548203	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTAGTTTTTGATGAAT	NA	False	NA	NA	False	NA	NA	NA	3476856	3556852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3477213_3492473_3492557_3495451_3495455_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3534444_3534609_3539636_3539734_3543733_3543840_3546224
transcript_28110.known	chr12	+	4144	9	FSM	ENSMUSG00000020668.11	ENSMUST00000220210.2	4144	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	19.8679232684244	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCATTGACCTTTATT	NA	False	NA	4	True	AGTAAA	-19	NA	3415131	3454064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3415497_3415771_3417532_3437551_3437654_3438134_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
transcript_28113.known	chr12	+	6791	8	FSM	ENSMUSG00000020668.11	ENSMUST00000020999.7	6791	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	14.4066311262614	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTTGCCTGCTTCTCTC	NA	False	NA	NA	False	AATAAA	-21	NA	3415189	3456494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3417532_3437551_3437654_3438134_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
transcript_28115.known	chr12	+	2895	4	FSM	ENSMUSG00000037486.19	ENSMUST00000140046.3	2895	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	33.9411254969543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATGCCAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	3476911	3504169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3477213_3492473_3492557_3495451_3495455_3501661
transcript_28116.known	chr12	-	1923	3	FSM	ENSMUSG00000071456.7	ENSMUST00000095903.7	1923	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAATTGTTAAGTGCT	NA	False	NA	NA	False	AATAAA	-11	NA	3476740	3455309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_3456712_3457643_3457925_3476500
transcript_28117.known	chr12	-	3569	3	FSM	ENSMUSG00000071456.7	ENSMUST00000168012.3	3569	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	29.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGCCTGGGTTTGTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	3477011	3453877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_3456712_3457700_3457925_3476500
transcript_28124.known	chr12	-	948	2	FSM	ENSMUSG00000071456.7	ENSMUST00000180149.2	948	2	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTCTGTCCTCTGATCTC	NA	False	NA	NA	False	NA	NA	NA	3476747	3457223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_3457925_3476500
transcript_28131.known	chr12	+	2428	21	FSM	ENSMUSG00000071454.14	ENSMUST00000101637.11	2428	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	122.213706268978	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTATGCAAAGAAAGCTGC	NA	False	NA	NA	False	NA	NA	NA	3622522	3831505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3804095_3804117_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
transcript_28132.known	chr12	+	2381	21	FSM	ENSMUSG00000071454.14	ENSMUST00000174663.8	2381	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	144.390581410285	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCCTGTGTGTGTTCCTT	NA	False	NA	24	True	AAAAAG	-4	NA	3622469	3831395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3804095_3804117_3822586_3822747_3823550_3823641_3826058_3826110_3829618_3829655_3831105
transcript_28140.known	chr12	+	2820	20	FSM	ENSMUSG00000071454.14	ENSMUST00000173199.8	2820	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	121.930910004004	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATGTGATCGCCAAGTC	NA	False	NA	NA	False	NA	NA	NA	3622380	3831796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3804095_3804117_3822586_3822747_3823550_3823641_3829618_3829655_3831105
transcript_28141.known	chr12	+	2390	20	FSM	ENSMUSG00000071454.14	ENSMUST00000164607.9	2390	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	90.3998198218487	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTGTGTTCCTTCCG	NA	False	NA	27	True	AAAAAG	-7	NA	3622432	3831398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
transcript_2816.nic	chr1	-	3193	17	NIC	ENSMUSG00000026235.15	novel	3612	17	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	40.9438926306476	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAAATA	NA	False	NA	NA	False	ATTAAA	-16	NA	77491751	77350249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_77350485_77351378_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
transcript_28164.nic	chr12	+	2409	19	NIC	ENSMUSG00000071454.14	novel	2820	20	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	85.0941562746747	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGAGCCTGTGTGTGTT	NA	False	NA	20	True	NA	NA	NA	3622365	3831391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3829618_3829655_3831105
transcript_28211.known	chr12	+	1629	9	FSM	ENSMUSG00000071454.14	ENSMUST00000173524.8	1629	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	156.038807272422	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGATTCCTGTTTTCC	NA	False	NA	NA	False	NA	NA	NA	3622465	3713242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3712672
transcript_28212.known	chr12	+	3689	7	FSM	ENSMUSG00000071454.14	ENSMUST00000174479.8	3689	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	135.946067737663	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGACACTTGTTTATATG	NA	False	NA	NA	False	AATAAA	-16	NA	3622433	3696787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916
transcript_28215.nic	chr12	+	3087	23	NIC	ENSMUSG00000020661.16	novel	2613	19	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	39.0183258490945	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACGGAGAAAAGTTCAGCA	105	False	NA	NA	False	NA	NA	NA	3856508	3957842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_3856603_3885026_3885261_3899634_3899740_3915984_3916253_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
transcript_28217.nic	chr12	+	4238	23	NIC	ENSMUSG00000020661.16	novel	2613	19	NA	NA	11	446	intron_retention	FALSE	canonical	2	4	junction_1	39.0183258490945	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTGGTGCTTTCTGTCT	105	False	NA	5	True	AATAAA	-14	NA	3856508	3958993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_3856603_3885026_3885261_3899634_3899740_3915984_3916253_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
transcript_28219.known	chr12	+	9685	23	FSM	ENSMUSG00000020661.16	ENSMUST00000020991.15	9685	23	0	0	0	0	multi-exon	FALSE	canonical	2	37	junction_5	34.649842283161	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTTTGTATTTTTTTCC	626	False	NA	6	True	NA	NA	NA	3857029	3964443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3857121_3885026_3885261_3899634_3899740_3915984_3916253_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
transcript_2822.known	chr1	-	3612	17	FSM	ENSMUSG00000026235.15	ENSMUST00000188797.7	3612	17	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_14	22.2548274257519	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAAATGGATTTTTA	NA	False	NA	NA	False	NA	NA	NA	77491725	77349775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
transcript_28227.nnic	chr12	+	2654	20	NNC	ENSMUSG00000020661.16	novel	502	6	NA	NA	4831	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	36.7627717268645	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACGGAGAAAAGTTCAGCA	7617	False	NA	NA	False	NA	NA	NA	3921021	3957842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_3921290_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
transcript_28235.known	chr12	+	2328	18	FSM	ENSMUSG00000020661.16	ENSMUST00000172689.8	2328	18	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	19.4274446476198	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACGGAGAAAAGTTCAGCA	NA	False	NA	NA	False	NA	NA	NA	3941727	3957842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_3941861_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
transcript_28249.known	chr12	+	2934	9	FSM	ENSMUSG00000020657.17	ENSMUST00000219923.2	2934	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	12.4492720670728	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAGGGATAAAA	NA	False	NA	NA	False	TATAAA	-18	NA	4132628	4159204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801_4157044_4157158_4157349_4157549
transcript_28254.known	chr12	+	4698	7	FSM	ENSMUSG00000020657.17	ENSMUST00000020986.15	4698	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	5.84284938098603	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTCTGCTGGCTGCAT	NA	False	NA	8	True	AGTAAA	-14	NA	4132582	4160606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801
transcript_28259.known	chr12	+	4672	22	FSM	ENSMUSG00000020654.16	ENSMUST00000127756.8	4672	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.5159143705325	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACTGTTGTGGCAATT	NA	False	NA	7	True	ATTAAA	-17	NA	4183401	4263524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4183720_4184146_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258576_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
transcript_28260.known	chr12	+	4962	22	FSM	ENSMUSG00000020654.16	ENSMUST00000124505.8	4962	22	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	15.5787808476277	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACTGTTGTGGCAATTC	NA	False	NA	8	True	ATTAAA	-18	NA	4183103	4263525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4183720_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258579_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
transcript_28261.nic	chr12	+	5058	22	NIC	ENSMUSG00000020654.16	novel	4348	21	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	15.3109863775942	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACTGTTGTGGCAATT	NA	False	NA	7	True	ATTAAA	-17	NA	4183068	4263524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_4183779_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258576_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
transcript_28262.known	chr12	+	4728	22	FSM	ENSMUSG00000020654.16	ENSMUST00000152065.8	4728	22	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	15.9929122623238	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACTGTTGTGGCAATTC	NA	False	NA	8	True	ATTAAA	-18	NA	4183396	4263525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4183779_4184152_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258579_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
transcript_28263.nic	chr12	+	5050	22	NIC	ENSMUSG00000020654.16	novel	4672	22	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	14.8737696951146	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACTGTTGTGGCAATT	NA	False	NA	7	True	ATTAAA	-17	NA	4183082	4263524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_4183779_4184146_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258576_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
transcript_28264.nic	chr12	+	5047	22	NIC	ENSMUSG00000020654.16	novel	4728	22	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	15.5787808476277	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGACTGTTGTGGCAATT	NA	False	NA	7	True	ATTAAA	-17	NA	4183082	4263524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_4183779_4184146_4185001_4223454_4223605_4244316_4244448_4244865_4244978_4245131_4245260_4246763_4246923_4248294_4248470_4249304_4249434_4250901_4251045_4251181_4251344_4253513_4253602_4254721_4254839_4256364_4256625_4256912_4256979_4258579_4258662_4259304_4259464_4260193_4260341_4260771_4260892_4261481_4261606_4262078_4262204_4262604
transcript_28273.nnic	chr12	-	2247	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	28.5623100528573	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4283938	4263481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281445_4281683_4283530_4283658_4283751
transcript_28274.nnic	chr12	-	2542	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	27.9026084005699	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4284263	4263481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281445_4281683_4283530_4283658_4283781
transcript_28275.known	chr12	-	4348	7	FSM	ENSMUSG00000020652.18	ENSMUST00000140975.8	4348	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_6	17.0953209972788	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTTTGCTTTTTAAGC	NA	False	NA	NA	False	ACTAAA	-23	NA	4284294	4261666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
transcript_28276.nnic	chr12	-	2472	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	14.9666295470958	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4284263	4263481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
transcript_2828.known	chr1	-	3043	16	FSM	ENSMUSG00000026235.15	ENSMUST00000190149.7	3043	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	43.5458379182213	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGGAAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	77491716	77350267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77491577
transcript_28284.known	chr12	+	3840	2	FSM	ENSMUSG00000096199.3	ENSMUST00000179139.3	3840	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCATTACCTAAAATAGAT	NA	False	NA	NA	False	AATAAA	-28	NA	4284026	4289950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4284279_4286362
transcript_28285.nnic	chr12	-	4832	22	NNC	ENSMUSG00000020647.11	novel	7329	23	NA	NA	-3825	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_21	26.3320847030245	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	4408261	4299450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_4299751_4299835_4299891_4303656_4303747_4309211_4309396_4313433_4313609_4317606_4318010_4320746_4320849_4324693_4325009_4325172_4325342_4328101_4328220_4340813_4340995_4344909_4346249_4347475_4347624_4356423_4356565_4363025_4363122_4365685_4365866_4372867_4373046_4385780_4385879_4389017_4389185_4394396_4394503_4404360_4404510_4408123
transcript_28287.known	chr12	-	457	3	FSM	ENSMUSG00000112819.2	ENSMUST00000217932.2	457	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	4603785	4602545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_4602746_4603013_4603176_4603690
transcript_28288.known	chr12	+	5987	39	FSM	ENSMUSG00000020640.11	ENSMUST00000062580.8	5987	39	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_33	12.8594576467878	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCTTTCAAAGCTTGACT	7386	False	NA	NA	False	AATAAA	-20	NA	4643007	4763950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4643233_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415_4723608_4747141_4747264_4750319_4750427_4751181_4751366_4756259_4756359_4756964_4757133_4757529_4757746_4758112_4758235_4758944_4759028_4761952_4762037_4762466_4762641_4763039
transcript_2829.known	chr1	+	1849	1	FSM	ENSMUSG00000101849.2	ENSMUST00000189147.2	1849	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAGTCTCGATTCTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	77491916	77493765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_77491900_77493800
transcript_28294.nic	chr12	+	2416	17	ISM	ENSMUSG00000020640.11	ENSMUST00000218072.2	2640	20	-256	7823	168	7316	5prime_fragment	FALSE	canonical	3	61	junction_5	9.91822029146359	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATTAGAGCAAATTCAAAAA	7184	False	NA	31	True	CATAAA	-38	NA	4642805	4700073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_4643233_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982
transcript_28298.nic	chr12	+	2023	16	ISM	ENSMUSG00000020640.11	ENSMUST00000217981.2	3968	17	0	3063	0	-3063	5prime_fragment	FALSE	canonical	3	61	junction_5	10.1355260785461	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAATTATGCCAAAGAC	7386	False	NA	NA	False	CATAAA	-15	NA	4643007	4689694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_4643233_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654
transcript_2830.known	chr1	+	4002	5	FSM	ENSMUSG00000032908.10	ENSMUST00000036172.10	4002	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.12132034355964	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTTTCTGTGGATTT	NA	False	NA	NA	False	AATAAA	-44	NA	78286981	78396926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_78287140_78336707_78336867_78367111_78367292_78369995_78370086_78393511
transcript_28300.known	chr12	-	2851	7	FSM	ENSMUSG00000050545.11	ENSMUST00000053458.7	2851	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	2.69258240356725	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAATAAAATAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	4819232	4796215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
transcript_28301.known	chr12	+	1180	4	FSM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_3	63.8609600790829	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTTTCTCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	4867543	4877659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4867820_4870593_4870713_4876757_4876897_4877013
transcript_28302.known	chr12	+	1774	2	FSM	ENSMUSG00000037361.9	ENSMUST00000219359.2	1774	2	0	0	0	0	multi-exon	FALSE	canonical	3	1147	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	4867560	4872108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4867820_4870593
transcript_28304.known	chr12	-	976	4	FSM	ENSMUSG00000020635.9	ENSMUST00000020964.7	976	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	6.34209919681348	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGTTGTGGGAGGTTCTT	NA	False	NA	0	True	AATAAA	-29	NA	4891591	4883173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_4883796_4884738_4884852_4888168_4888217_4891398
transcript_28305.known	chr12	-	246	4	FSM	ENSMUSG00000020635.9	ENSMUST00000219880.2	246	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	23.2999761564017	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGGGGCAGAGGGCGAA	NA	False	NA	NA	False	NA	NA	NA	4891435	4883792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_4883841_4884738_4884852_4888168_4888217_4891398
transcript_28307.known	chr12	+	2202	4	FSM	ENSMUSG00000051721.7	ENSMUST00000220215.2	2202	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	5.90668171555645	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGGATTTATTCATT	NA	False	NA	NA	False	NA	NA	NA	4893302	4906967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4893452_4900126_4901943_4905277_4905393_4906845
transcript_28308.known	chr12	+	4317	4	FSM	ENSMUSG00000051721.7	ENSMUST00000223551.2	4317	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	4.49691252107735	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGCTCTCACACGTTT	NA	False	NA	2	True	AATAAA	-15	NA	4893302	4910043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4893452_4900126_4901943_4905277_4905393_4907806
transcript_2831.known	chr1	-	2036	18	FSM	ENSMUSG00000026245.17	ENSMUST00000170217.8	2036	18	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	335.563627493931	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGGCTCTGCTACTAT	NA	False	NA	NA	False	AATAAA	-18	NA	78465496	78394611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_78394860_78401829_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
transcript_28311.known	chr12	+	2892	2	FSM	ENSMUSG00000051721.7	ENSMUST00000053034.6	2892	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAACTATTAG	NA	False	NA	NA	False	NA	NA	NA	4893346	4902913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4893452_4900126
transcript_28314.known	chr12	+	605	2	FSM	ENSMUSG00000051721.7	ENSMUST00000219069.2	605	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACATGGTGGTGTGTGCC	NA	False	NA	NA	False	AATAAA	-15	NA	4893327	4899343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_4893452_4898862
transcript_28315.known	chr12	-	2490	14	FSM	ENSMUSG00000037336.15	ENSMUST00000045921.14	2490	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.01473859287828	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGACAGCTCTGCT	NA	False	NA	NA	False	ATTAAA	-17	NA	4924358	4913071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_4914080_4915136_4915314_4915727_4915872_4916158_4916269_4916448_4916530_4916789_4916874_4917337_4917460_4917611_4917703_4918912_4919044_4919131_4919211_4919534_4919659_4920498_4920624_4921375_4921502_4924270
transcript_28316.known	chr12	-	2146	7	FSM	ENSMUSG00000020634.13	ENSMUST00000142867.8	2146	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	462.20356866741	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAAAAGCAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	4957264	4929348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957140
transcript_28317.known	chr12	-	2696	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	0	0	0	0	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGTGTGGTTGTACATG	NA	False	NA	-6	True	GATAAA	-13	NA	4957705	4929031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
transcript_28322.nic	chr12	+	3683	24	NIC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	15	13088	combination_of_known_junctions	FALSE	canonical	3	118	junction_21	18.8884898088486	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGAAACCCAATGGATGC	NA	False	NA	NA	False	NA	NA	NA	4967367	5077131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5023967_5024280_5028452_5028589_5040871_5041059_5056605_5056792_5060252_5060389_5063802_5064000_5067982_5068143_5074581_5074705_5077042
transcript_28325.nic	chr12	+	4085	21	NIC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	21	736	combination_of_known_junctions	FALSE	canonical	3	129	junction_14	17.6790129814987	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTCCTGATTGTGAA	NA	False	NA	NA	False	TATAAA	-17	NA	4967373	5064779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5023967_5024280_5028452_5028589_5040871_5041059_5056605_5056792_5060252_5060389_5063802
transcript_28327.nnic	chr12	+	2918	16	NNC	ENSMUSG00000052812.6	novel	8035	31	NA	NA	-48	16109	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_15	43.646254771235	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATGGTTGTGTGTTCAG	NA	False	NA	NA	False	AATAAA	-13	NA	4967304	5021103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518_5000595_5002607_5002707_5004545_5004658_5007499_5007616_5008056_5008232_5011217_5011307_5015840_5016001_5019351_5019443_5020405
transcript_28328.nic	chr12	+	1252	8	ISM	ENSMUSG00000052812.6	ENSMUST00000218303.2	1824	10	-33	4457	21	3461	5prime_fragment	FALSE	canonical	3	154	junction_4	15.0969655012833	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGGAAAATACACTATTTG	NA	False	NA	NA	False	NA	NA	NA	4967373	5000537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905_4995023_5000518
transcript_28329.nic	chr12	+	1272	7	ISM	ENSMUSG00000052812.6	ENSMUST00000218303.2	1824	10	-102	10002	-48	-2084	5prime_fragment	FALSE	canonical	3	154	junction_4	4.87909372276815	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGGATCGATACCAAGCA	NA	False	NA	NA	False	AAGAAA	-34	NA	4967304	4994992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154_4993264_4994905
transcript_28330.nic	chr12	+	1118	6	ISM	ENSMUSG00000052812.6	ENSMUST00000218303.2	1824	10	-102	11798	-48	-3880	5prime_fragment	FALSE	canonical	3	154	junction_4	5.2687759489278	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTGAGAAGAAATAGTTA	NA	False	NA	NA	False	AAAAAG	-11	NA	4967304	4993196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_4967922_4987386_4987539_4989655_4989706_4990091_4990246_4991971_4992075_4993154
transcript_28332.known	chr12	+	2737	7	FSM	ENSMUSG00000037669.16	ENSMUST00000037383.13	2737	7	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_1	76.8839312788367	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258106	8335759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
transcript_28334.known	chr12	+	1159	6	FSM	ENSMUSG00000037669.16	ENSMUST00000218086.2	1159	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	78.8958807543208	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAGAACTAACATTGTG	NA	False	NA	NA	False	AATAAA	-34	NA	8258144	8326210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807
transcript_28335.nic	chr12	+	1104	6	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	3	182	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	91.7243697171041	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAATTCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8258109	8334261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_8258205_8270599_8270756_8288442_8288616_8318363_8318599_8325807_8325891_8333899
transcript_28336.nic	chr12	+	2602	6	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	91.7243697171041	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258109	8335759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_8258205_8270599_8270756_8288442_8288616_8318363_8318599_8325807_8325891_8333899
transcript_28337.known	chr12	+	1587	5	FSM	ENSMUSG00000037669.16	ENSMUST00000218305.2	1587	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	100.260909630823	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGCCTAAACTTTATTG	NA	False	NA	NA	False	AGTAAA	-17	NA	8258135	8334943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8258205_8270599_8270756_8318363_8318599_8325807_8325891_8333899
transcript_28339.known	chr12	+	3496	3	FSM	ENSMUSG00000037669.16	ENSMUST00000217763.2	3496	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	8258149	8280504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8258205_8270599_8270756_8277219
transcript_28341.known	chr12	+	2959	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	12.8765506078125	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCAGTGTTGTTCTTTTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	8363431	8393824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
transcript_28342.nnic	chr12	+	3046	7	NNC	ENSMUSG00000020605.10	novel	2959	7	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	51.6881675692481	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCAGTGTTGTTCTTTTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	8363390	8393824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_8363498_8367784_8367997_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
transcript_28348.known	chr12	-	2349	1	FSM	ENSMUSG00000054364.6	ENSMUST00000067384.6	2349	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	280	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTGTGGCTTAATAGTG	NA	False	NA	87	True	ATTAAA	-28	NA	8550009	8547660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_8547700_8550000
transcript_28355.known	chr12	+	4984	21	FSM	ENSMUSG00000020594.15	ENSMUST00000111123.9	4984	21	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	41.9630790100059	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTATGAAAATATTTTGG	NA	False	NA	14	True	ATTAAA	-17	NA	8724133	8801454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8724171_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8783272_8783510_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
transcript_28360.known	chr12	+	3560	21	FSM	ENSMUSG00000020594.15	ENSMUST00000163569.8	3560	21	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_16	41.8388575369835	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCACCAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	8724420	8800001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8783272_8783510_8793760_8794029_8794336_8794467_8794614_8794750_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
transcript_28362.nic	chr12	+	3700	21	NIC	ENSMUSG00000020594.15	novel	6226	21	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.0381225204078	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTCACATATTTTGTAAA	NA	False	NA	NA	False	AAAAAG	-9	NA	8724660	8800028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_8724840_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8783272_8783510_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
transcript_28366.known	chr12	+	3587	20	FSM	ENSMUSG00000020594.15	ENSMUST00000020915.10	3587	20	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	48.0562343723461	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAGAAAAGAATAAAATGAT	NA	False	NA	-26	True	AAGAAA	-12	NA	8724144	8800320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8724171_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8769002_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
transcript_2837.known	chr1	-	1801	17	FSM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	338.950378927359	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	-2	True	AATAAA	-19	NA	78465499	78401721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456651_78458944_78459001_78465421
transcript_28370.known	chr12	+	3295	20	FSM	ENSMUSG00000020594.15	ENSMUST00000169089.8	3295	20	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_12	35.415538790362	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTCACATATTTTGTAAA	NA	False	NA	NA	False	AAAAAG	-9	NA	8724469	8800028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
transcript_28374.nic	chr12	+	3463	20	NIC	ENSMUSG00000020594.15	novel	6226	21	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	42.1280201659477	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTCACATATTTTGTAAA	NA	False	NA	NA	False	AAAAAG	-9	NA	8724660	8800028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_8724840_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
transcript_2838.known	chr1	-	1951	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGCCAGCGTGTGGAACA	NA	False	NA	15	True	AATAAA	-36	NA	78465534	78401704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
transcript_28382.known	chr12	+	3157	5	FSM	ENSMUSG00000020592.15	ENSMUST00000020911.14	3157	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_4	19.0574788468989	643	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTGTACTTGTGCAG	NA	False	NA	NA	False	AATAAA	-28	NA	8821322	8843715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8821702_8839406_8839489_8840384_8840867_8841290_8841427_8841637
transcript_28388.known	chr12	+	1773	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	0	0	0	0	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	495	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTCATGTTTATGCTA	NA	False	NA	38	True	AATAAA	-29	NA	8971663	8988742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
transcript_28390.known	chr12	+	3014	8	FSM	ENSMUSG00000020583.5	ENSMUST00000020899.5	3014	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	6.68534797531291	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTTTTAAAAACTTTATT	NA	False	NA	NA	False	NA	NA	NA	8997928	9022028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_8998252_9001997_9002565_9005366_9005493_9008789_9008916_9011117_9011244_9013472_9013599_9017628_9017740_9020519
transcript_28392.known	chr12	+	4501	28	FSM	ENSMUSG00000066643.13	ENSMUST00000085745.13	4501	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	21.425725854567	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGTAATGCTGTAGTT	NA	False	NA	8	True	AATAAA	-15	NA	9023891	9078847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_9024180_9024933_9025052_9027362_9027435_9028597_9028691_9031031_9031161_9032760_9032895_9035628_9035795_9035966_9036113_9037277_9037404_9039904_9040091_9045639_9045673_9046068_9046130_9053996_9054142_9055762_9055833_9056719_9056774_9058001_9058112_9058478_9058690_9062660_9062742_9065969_9066107_9066436_9066641_9068085_9068233_9069877_9070011_9071729_9071841_9072718_9072884_9074193_9074335_9074885_9075043_9077482_9077724_9078005
transcript_28393.known	chr12	+	4312	27	FSM	ENSMUSG00000066643.13	ENSMUST00000111113.3	4312	27	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	11.1856972283898	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAGTAATGCTGTAGT	NA	False	NA	7	True	AATAAA	-14	NA	9024046	9078846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_9024180_9024933_9025052_9027362_9027435_9028597_9028691_9031031_9031161_9032760_9032895_9035628_9035795_9035966_9036113_9037277_9037404_9039904_9040091_9046068_9046130_9053996_9054142_9055762_9055833_9056719_9056774_9058001_9058112_9058478_9058690_9062660_9062742_9065969_9066107_9066436_9066641_9068085_9068233_9069877_9070011_9071729_9071841_9072718_9072884_9074193_9074335_9074885_9075043_9077482_9077724_9078005
transcript_28398.known	chr12	+	2921	10	FSM	ENSMUSG00000066643.13	ENSMUST00000159126.8	2921	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	13.8082101181387	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGGAAAGGAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	9024010	9041672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_9024180_9024933_9025052_9027362_9027435_9028597_9028691_9031031_9031161_9032760_9032895_9035628_9035795_9035966_9036113_9037277_9037404_9039904
transcript_28399.known	chr12	+	1000	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	13	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAATAAAACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	9079996	9086394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_9080197_9084921_9085089_9085761
transcript_28401.known	chr12	+	1480	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTGCATTTCTTTAA	NA	False	NA	11	True	AATAAA	-17	NA	10440771	10445562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_10441227_10444537
transcript_28404.nnic	chr12	-	2486	4	NNC	ENSMUSG00000043673.12	novel	2933	3	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	25.7207222984806	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCCTTGTTTCTATGT	4016	False	NA	-2	True	AATAAA	-18	NA	11200365	11140740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_11142757_11169759_11169950_11178388_11178489_11200185
transcript_28406.nnic	chr12	-	2388	3	NNC	ENSMUSG00000043673.12	novel	2332	3	NA	NA	678	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	27	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCCTTGTTTCTATGT	4685	False	NA	-2	True	AATAAA	-18	NA	11199696	11140740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_11142757_11169759_11169950_11199514
transcript_28407.known	chr12	-	2933	3	FSM	ENSMUSG00000043673.12	ENSMUST00000055673.2	2933	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	7	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAGTGGTATACCTCAT	4007	False	NA	NA	False	ATTAAA	-32	NA	11200374	11140202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_11142757_11169759_11169950_11200185
transcript_28415.known	chr12	-	5268	14	FSM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	6.04323672043149	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTAATCCTTACCTCA	NA	False	NA	4	True	NA	NA	NA	11315767	11288920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
transcript_28425.known	chr12	+	5603	27	FSM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	0	0	0	0	multi-exon	TRUE	canonical	3	574	junction_19	50.8148542090207	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGTCATGCTTTTGTGA	4317	False	NA	NA	False	AATAAA	-23	NA	11315886	11369786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
transcript_28442.known	chr12	+	3373	10	FSM	ENSMUSG00000020608.8	ENSMUST00000218866.2	3373	10	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_2	43.5943704599856	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTATGTCATTGTGGGT	4560	False	NA	NA	False	TATAAA	-20	NA	11316129	11337655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311
transcript_28453.nic	chr12	+	708	6	NIC	ENSMUSG00000020608.8	novel	3373	10	NA	NA	-24	2745	combination_of_known_junctions	FALSE	canonical	3	100	junction_2	237.697623042385	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACAAATAAATCAGGGAG	4512	False	NA	NA	False	AAGAAA	-8	NA	11316081	11333148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_11316290_11321729_11321873_11329605_11329743_11330341_11330404_11332360_11332442_11333071
transcript_28457.known	chr12	+	614	1	FSM	ENSMUSG00000078377.6	ENSMUST00000105169.6	614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACGTGATATTTGTAAAAT	NA	False	NA	NA	False	NA	NA	NA	12073045	12073659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_12073000_12073700
transcript_28458.known	chr12	+	9452	13	FSM	ENSMUSG00000020589.18	ENSMUST00000069066.14	9452	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	32.1829621936135	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGACTTGGCTTCGTTC	NA	False	NA	NA	False	NA	NA	NA	12312139	12430966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_12312240_12326343_12326417_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
transcript_2846.known	chr1	+	3950	16	FSM	ENSMUSG00000032883.16	ENSMUST00000035779.15	3950	16	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_2	98.3136477470617	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCTTCAGAGTCTTGT	NA	False	NA	7	True	AATAAA	-19	NA	78635541	78685460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_78635821_78640857_78640998_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
transcript_28460.known	chr12	+	1771	12	FSM	ENSMUSG00000020589.18	ENSMUST00000069005.10	1771	12	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	14.2718586881045	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGGTTTGTGTCCCTT	NA	False	NA	NA	False	NA	NA	NA	12312177	12423396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_12312240_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
transcript_28464.known	chr12	+	315	1	FSM	ENSMUSG00000066629.3	ENSMUST00000085720.3	315	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3061	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAACCCTCCCCCAATA	NA	False	NA	NA	False	NA	NA	NA	12962022	12962337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_12962000_12962300
transcript_28469.known	chr12	-	2674	3	FSM	ENSMUSG00000037169.16	ENSMUST00000043396.15	2674	3	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_2	66.5	1668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGATGTTTTCCTTCCTAG	NA	False	NA	-18	True	AATAAA	-20	NA	12991915	12986093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_12987612_12989610_12990488_12991636
transcript_28473.known	chr12	-	2522	2	FSM	ENSMUSG00000037169.16	ENSMUST00000130990.2	2522	2	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCGATGTTTTCCTTCC	NA	False	NA	-21	True	AATAAA	-17	NA	12990617	12986096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_12987612_12989610
transcript_28479.known	chr12	-	4842	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	0	0	0	0	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGCTGTGTGTTTATAGA	NA	False	NA	NA	False	ATTAAA	-22	NA	13299214	13266973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
transcript_28497.nic	chr12	-	319	5	ISM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	-12	26933	-12	-6174	5prime_fragment	FALSE	canonical	3	2012	junction_4	108.204378377217	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGGAAGGAAAGAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	13299226	13293906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
transcript_28498.known	chr12	-	724	11	FSM	ENSMUSG00000037149.11	ENSMUST00000221623.2	724	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	646.529164075373	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTAATTAGAAGTTTTAC	NA	False	NA	NA	False	TATAAA	-32	NA	13299164	13287732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295732_13296026_13296079_13299104
transcript_28499.known	chr12	+	7234	52	FSM	ENSMUSG00000020576.11	ENSMUST00000042953.10	7234	52	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_37	10.8075685101282	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTTTGAGTACTTCCTT	NA	False	NA	NA	False	AATAAA	-28	NA	13319133	13633812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_13319266_13321164_13321220_13322657_13322695_13323788_13323867_13324175_13324224_13329388_13329433_13335183_13335318_13338671_13338806_13339882_13339982_13350093_13350233_13356904_13356974_13360176_13360306_13367698_13367763_13371645_13371840_13372856_13373115_13374269_13374396_13378336_13378489_13380617_13380759_13381024_13381104_13385831_13385937_13386274_13386412_13402783_13402868_13406824_13406979_13410931_13411118_13412442_13412617_13424696_13424831_13427434_13427498_13429647_13429771_13440925_13441029_13443303_13443534_13455374_13455488_13458194_13458309_13463528_13463643_13464784_13464943_13465645_13465733_13482897_13483063_13491467_13491582_13491862_13491948_13503053_13503131_13503485_13503624_13519841_13520072_13524127_13524239_13532386_13532638_13533710_13534046_13563370_13563590_13568945_13569149_13570695_13570786_13584380_13584577_13608612_13608753_13610837_13610977_13616129_13616259_13633391
transcript_285.nic	chr1	+	814	7	ISM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-148	5948	-148	-5948	5prime_fragment	TRUE	canonical	3	1526	junction_2	193.446518592493	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGTACGAAGTAGGATAT	NA	False	NA	NA	False	AATACA	-18	NA	4927888	4962180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137
transcript_28503.known	chr12	+	599	1	FSM	ENSMUSG00000050974.5	ENSMUST00000052528.5	599	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTCTCTCTTTTTCGTT	NA	False	NA	NA	False	TATAAA	-15	NA	14544561	14545160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_14544600_14545200
transcript_28507.known	chr12	-	5581	21	FSM	ENSMUSG00000020593.17	ENSMUST00000067124.6	5581	21	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_16	22.2780160696593	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGAATCCACAAGCCCCAG	7242	False	NA	NA	False	NA	NA	NA	16639771	16585669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621264_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
transcript_28511.known	chr12	-	4103	21	FSM	ENSMUSG00000020593.17	ENSMUST00000222989.2	4103	21	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_20	37.3187620373452	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTGCTTTACTTTG	7246	False	NA	-25	True	AATGAA	-13	NA	16639767	16587188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16634508_16634653_16639718
transcript_28517.known	chr12	-	4114	20	FSM	ENSMUSG00000020593.17	ENSMUST00000221230.2	4114	20	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_15	24.5031514734934	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGAAAAAAAGCAGT	7239	False	NA	NA	False	NA	NA	NA	16639774	16587040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
transcript_28530.known	chr12	+	2362	8	FSM	ENSMUSG00000057469.9	ENSMUST00000221541.2	2362	8	0	0	0	0	multi-exon	FALSE	canonical	2	121	junction_1	60.8859757318245	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCGTGCCTGTGTTTC	7532	False	NA	4	True	ATTAAA	-15	NA	16861099	16876753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_16861317_16863847_16863914_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
transcript_28531.nnic	chr12	+	2359	7	NIC	ENSMUSG00000057469.9	novel	2362	8	NA	NA	-11	-2	combination_of_known_splicesites	FALSE	canonical	2	10	junction_6	88.3712182909245	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGCTGCGTGCCTGTGTT	7385	False	NA	2	True	ATTAAA	-13	NA	16860952	16876751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_16861317_16863847_16863914_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16875365
transcript_28533.known	chr12	+	2418	7	FSM	ENSMUSG00000057469.9	ENSMUST00000020908.9	2418	7	0	0	0	0	multi-exon	FALSE	canonical	2	127	junction_1	56.1505911713215	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCGTGCCTGTGTTTC	7410	False	NA	4	True	ATTAAA	-15	NA	16860977	16876753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
transcript_28534.nnic	chr12	+	2305	6	NIC	ENSMUSG00000057469.9	novel	2418	7	NA	NA	-23	-2	combination_of_known_splicesites	FALSE	canonical	2	10	junction_5	95.7747357083276	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGCTGCGTGCCTGTGTT	7373	False	NA	2	True	ATTAAA	-13	NA	16860940	16876751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16875365
transcript_28536.known	chr12	+	3018	4	FSM	ENSMUSG00000057469.9	ENSMUST00000220707.2	3018	4	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	65.5303152916436	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGGAAGTTTGCGTTGAG	7402	False	NA	NA	False	NA	NA	NA	16860969	16872628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229
transcript_28540.nic	chr12	+	3043	22	ISM	ENSMUSG00000020580.11	ENSMUST00000220688.2	4357	33	-360	9851	-88	-9851	5prime_fragment	FALSE	canonical	1	36	junction_11	47.0657859662067	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAGAAGACAAAACTTT	1947	False	NA	NA	False	TATAAA	-30	NA	16944807	17018252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_16945332_16976939_16977022_16978934_16979036_16990403_16990542_16992694_16992956_16998458_16998604_17000572_17000712_17002496_17002589_17003261_17003422_17004907_17004969_17005670_17005683_17007226_17007307_17007461_17007511_17008119_17008256_17008340_17008433_17008628_17008876_17009402_17009510_17011616_17011777_17015011_17015173_17015468_17015654_17016624_17016695_17018211
transcript_28544.nic	chr12	+	2875	20	ISM	ENSMUSG00000020580.11	ENSMUST00000220688.2	4357	33	-360	12507	-88	-12507	5prime_fragment	FALSE	canonical	1	36	junction_11	46.9359202468459	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATCATCTTATGGAAATGA	1947	False	NA	NA	False	NA	NA	NA	16944807	17015596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_16945332_16976939_16977022_16978934_16979036_16990403_16990542_16992694_16992956_16998458_16998604_17000572_17000712_17002496_17002589_17003261_17003422_17004907_17004969_17005670_17005683_17007226_17007307_17007461_17007511_17008119_17008256_17008340_17008433_17008628_17008876_17009402_17009510_17011616_17011777_17015011_17015173_17015468
transcript_2855.known	chr1	+	2976	15	FSM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_1	36.8929090028677	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTTTAAGAAATTTCGAA	NA	False	NA	3	True	AATAAA	-14	NA	78635599	78684684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
transcript_28552.nic	chr12	+	583	2	ISM	ENSMUSG00000020580.11	ENSMUST00000220688.2	4357	33	-360	51105	-88	-19821	5prime_fragment	FALSE	canonical	3	164	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGATAACTTCTTAAATA	1947	False	NA	NA	False	AATAAA	-3	NA	16944807	16976998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_16945332_16976939
transcript_28554.known	chr12	-	1928	7	FSM	ENSMUSG00000045679.15	ENSMUST00000054536.11	1928	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	25.4165300542777	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTAAGCTGTCATGAATT	NA	False	NA	1	True	AATAAA	-26	NA	17050119	17038648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_17039897_17042278_17042321_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
transcript_28555.known	chr12	-	1706	6	FSM	ENSMUSG00000045679.15	ENSMUST00000222203.2	1706	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	66.9943281181325	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTAGTTTTCTATATTTA	NA	False	NA	-49	True	AGTAAA	-18	NA	17050068	17038698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_17039897_17042278_17042321_17045614_17045673_17047634_17047705_17047774_17047858_17049813
transcript_28556.known	chr12	-	922	6	FSM	ENSMUSG00000045679.15	ENSMUST00000067572.13	922	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.8322422793728	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTAGTGTTTTGCCCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	17050026	17042961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_17043339_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
transcript_28557.known	chr12	-	3437	5	FSM	ENSMUSG00000071398.9	ENSMUST00000095823.9	3437	5	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	17061728	17053319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_17056000_17057020_17057238_17058273_17058314_17061128_17061353_17061452
transcript_28562.known	chr12	+	2125	13	FSM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	2487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGTCTGTGATTATCTTC	NA	False	NA	NA	False	AATAAA	-12	NA	17316595	17334771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
transcript_28564.known	chr12	-	1425	13	FSM	ENSMUSG00000020566.20	ENSMUST00000221129.2	1425	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	6.04841577054135	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTTTTCTTGTGTTCT	NA	False	NA	-2	True	AATAAA	-12	NA	17374731	17334725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_17334950_17335113_17335247_17338083_17338182_17341429_17341524_17341628_17341722_17344145_17344215_17344676_17344776_17347729_17347822_17351121_17351217_17358272_17358359_17371598_17371667_17373338_17373512_17374630
transcript_28570.known	chr12	+	1986	11	FSM	ENSMUSG00000020571.14	ENSMUST00000162936.8	1986	11	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	177.381199680237	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTAGAGTTTTGTGT	NA	False	NA	NA	False	AATAAA	-14	NA	17316545	17331811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911
transcript_28587.nnic	chr12	+	2777	22	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	62.5021722978499	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	14	True	AATAAA	-17	NA	17398425	17480096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115_17479587_17479863
transcript_28589.nnic	chr12	+	2878	22	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	62.5021722978499	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	14	True	AATAAA	-17	NA	17398425	17480096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115_17479649_17479824
transcript_2859.known	chr1	+	2492	14	FSM	ENSMUSG00000032883.16	ENSMUST00000134566.8	2492	14	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	120.022335199518	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTTGTTGCTGTGTA	NA	False	NA	1	True	TTTAAA	-28	NA	78635599	78684618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_78635821_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
transcript_28592.known	chr12	+	3021	21	FSM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	25.2103153490788	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	14	True	AATAAA	-17	NA	17398458	17480096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
transcript_28608.known	chr12	+	2208	12	FSM	ENSMUSG00000011179.9	ENSMUST00000171737.3	2208	12	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_11	306.963561516955	2409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAGGGAATGTTTGCAAG	NA	False	NA	NA	False	AATAAA	-20	NA	17594794	17601085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_17595170_17597096_17597195_17597283_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863_17600079_17600607
transcript_2861.nic	chr1	+	1938	12	ISM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	-52	5614	6	64	5prime_fragment	FALSE	canonical	3	358	junction_1	31.8897895522368	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAGCAAAAACAAAGACAG	NA	False	NA	NA	False	NA	NA	NA	78635547	78679070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985
transcript_28625.nnic	chr12	+	1664	5	NIC	ENSMUSG00000071379.3	novel	1526	4	NA	NA	-52	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	31.8541598539343	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	8572	False	NA	17	True	AATAAA	-5	NA	17740804	17841934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_17741048_17817214_17817301_17836147_17836550_17837545_17837652_17841107
transcript_28626.known	chr12	+	697	5	FSM	ENSMUSG00000071379.3	ENSMUST00000222944.2	697	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	35.2304910553344	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATCAAAGGTGCCAAGAG	NA	False	NA	NA	False	NA	NA	NA	17778226	17841127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_17778310_17817214_17817301_17836147_17836550_17837545_17837652_17841107
transcript_28628.known	chr12	+	1526	4	FSM	ENSMUSG00000071379.3	ENSMUST00000071858.5	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	8.52447456836295	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	8624	False	NA	17	True	AATAAA	-5	NA	17740856	17841934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_17741048_17836147_17836550_17837545_17837652_17841107
transcript_28633.nnic	chr12	+	945	2	Fusion	ENSMUSG00000113642.2_ENSMUSG00000113234.2	novel	1295	3	NA	NA	-301	21	multi-exon	FALSE	canonical	3	14	junction_1	0	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTCCCAGCTGAGCTCAT	NA	False	NA	39	True	AATAAA	-33	NA	18042832	18112486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr12_+_18043260_18111968
transcript_28645.nic	chr12	+	3208	3	Fusion	ENSMUSG00000113857.2_ENSMUSG00000112970.2	novel	575	3	NA	NA	-339	743	intron_retention	FALSE	canonical	0	0	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCC	NA	False	NA	NA	False	AATAAA	-1	NA	18903532	18962102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr12_+_18903999_18955903_18957804_18961260
transcript_2865.nic	chr1	+	1393	7	ISM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	-52	10763	6	-825	5prime_fragment	FALSE	canonical	3	358	junction_1	38.5313724991294	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATCACATATCTGCAAC	NA	False	NA	9	True	NA	NA	NA	78635547	78673921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797
transcript_28679.nnic	chr12	+	1771	5	Fusion	ENSMUSG00000113964.2_ENSMUSG00000114041.3	novel	567	4	NA	NA	-313	740	multi-exon	FALSE	canonical	0	0	junction_2	5.11737237261468	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	NA	False	NA	NA	False	AATAAA	-1	NA	20246603	20328769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr12_+_20247044_20325015_20325346_20325356_20325414_20326835_20326942_20327931
transcript_28682.nnic	chr12	+	3193	4	Fusion	ENSMUSG00000113964.2_ENSMUSG00000114041.3	novel	567	4	NA	NA	-313	740	intron_retention	FALSE	canonical	0	0	junction_2	5.35412613473634	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	NA	False	NA	NA	False	AATAAA	-1	NA	20246603	20328769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr12_+_20247044_20325015_20325346_20325356_20326942_20327931
transcript_28683.nnic	chr12	+	1108	2	Fusion	ENSMUSG00000113964.2_ENSMUSG00000114041.3	novel	567	4	NA	NA	-313	-2346	intron_retention	FALSE	canonical	2	8	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTCTAATGAGATCTGA	NA	False	NA	NA	False	ATTAAA	-42	NA	20246603	20325683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr12_+_20247044_20325015
transcript_28684.nnic	chr12	+	1110	2	Fusion	ENSMUSG00000112951.3_ENSMUSG00000116537.2	novel	739	2	NA	NA	-303	22	multi-exon	FALSE	canonical	3	27	junction_1	0	33	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAACAAACCTCTAATGAG	NA	False	NA	NA	False	NA	NA	NA	20465634	20509234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr12_+_20466065_20508554
transcript_28693.nnic	chr12	-	1361	2	Genic_Genomic	ENSMUSG00000091071.3	novel	1471	1	NA	NA	-85	12	multi-exon	FALSE	canonical	3	19	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGACTATTATTCGTTTGT	NA	False	NA	NA	False	AAGAAA	-37	NA	20865813	20864245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr12_-_20865068_20865274
transcript_28694.known	chr12	-	1471	1	FSM	ENSMUSG00000091071.3	ENSMUST00000110971.3	1471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACTAGACTA	NA	False	NA	NA	False	AAGAAA	-25	NA	20865728	20864257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_20864300_20865700
transcript_28695.known	chr12	-	1735	2	FSM	ENSMUSG00000099759.2	ENSMUST00000189625.2	1735	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTTCTCACTTTATACA	NA	False	NA	NA	False	GGGGCT	-1	NA	20865780	20854381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_20855683_20865346
transcript_28698.known	chr12	-	2004	4	FSM	ENSMUSG00000085642.9	ENSMUST00000140360.8	2004	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCCAGTTTCATTTTCTA	NA	False	NA	NA	False	NA	NA	NA	20971263	20925640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_20927097_20964759_20964843_20965748_20965793_20970842
transcript_2870.known	chr1	+	7393	3	FSM	ENSMUSG00000079470.9	ENSMUST00000053760.12	7393	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	87	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGCTTCATTCTTGTGC	NA	False	NA	12	True	AATAAA	-22	NA	78635754	78649229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_78635821_78640857_78640998_78642042
transcript_28700.known	chr12	-	881	2	FSM	ENSMUSG00000085642.9	ENSMUST00000143905.2	881	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAACAAAAC	NA	False	NA	NA	False	TATAAA	-44	NA	20971054	20926427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_20927097_20970842
transcript_28702.known	chr12	+	5552	28	FSM	ENSMUSG00000052632.17	ENSMUST00000101562.11	5552	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	20.8686531877612	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTTCATCTGTAAAGTA	NA	False	NA	20	True	AATAAA	-16	NA	21161748	21320172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_21162171_21218204_21218278_21235098_21235245_21249544_21249620_21250880_21250931_21253960_21254091_21256303_21256390_21262809_21262886_21263139_21263227_21264362_21264372_21267975_21268080_21268188_21268259_21274305_21274394_21279239_21279289_21279374_21279542_21280823_21280958_21289555_21289651_21294686_21294877_21297288_21297375_21299302_21299419_21301139_21301208_21302741_21302856_21304215_21304469_21308010_21308177_21315131_21315182_21315463_21315535_21315888_21316012_21317718
transcript_28704.nic	chr12	+	791	5	ISM	ENSMUSG00000052632.17	ENSMUST00000050990.10	3345	27	-241	67260	-35	0	5prime_fragment	FALSE	canonical	3	55	junction_4	7.49583217528247	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAAAATGTGAGTGTGT	NA	False	NA	NA	False	GATAAA	-17	NA	21161713	21250920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_21162171_21218204_21218278_21235098_21235245_21249544_21249620_21250880
transcript_28705.nic	chr12	+	2061	4	ISM	ENSMUSG00000052632.17	ENSMUST00000050990.10	3345	27	-241	67251	-35	9	intron_retention	FALSE	canonical	3	60	junction_3	5.71547606649408	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGTGTGTTTTGTTTGT	NA	False	NA	NA	False	GATAAA	-26	NA	21161713	21250929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_21162171_21218204_21218278_21235098_21235245_21249544
transcript_28725.known	chr12	+	2499	18	FSM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_10	70.3324286444819	2405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTGTGCCACAGCTTT	NA	False	NA	NA	False	NA	NA	NA	21336358	21365057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
transcript_28747.known	chr12	+	1858	13	FSM	ENSMUSG00000054309.10	ENSMUST00000222968.2	1858	13	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_11	221.93434652317	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCCTAAAATTTTATTTA	NA	False	NA	NA	False	TTTAAA	-6	NA	21336399	21358237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355471_21356773_21356883_21357993
transcript_28755.known	chr12	-	1701	7	FSM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_6	78.2148039411693	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATCACTGCATTAAGAC	NA	False	NA	NA	False	ATTAAA	-13	NA	21336098	21320093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
transcript_28756.known	chr12	-	1921	7	FSM	ENSMUSG00000062352.16	ENSMUST00000076260.12	1921	7	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	20.4728817924807	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGCTTTCCTTTCAGTT	NA	False	NA	NA	False	TATAAA	-10	NA	21336285	21319806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
transcript_28759.known	chr12	-	4423	19	FSM	ENSMUSG00000052593.17	ENSMUST00000127974.8	4423	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_14	36.8288081684856	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATGATACGAGCCA	NA	False	NA	NA	False	AATAAA	-36	NA	21423594	21373517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397451_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
transcript_28761.known	chr12	+	1141	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCACAATTTTATAAAAATG	NA	False	NA	NA	False	AATACA	-25	NA	21366389	21373820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
transcript_28762.nnic	chr12	+	937	6	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	-40	-212	combination_of_known_splicesites	FALSE	canonical	3	85	junction_2	143.346293987672	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	9	True	ATTAAA	-19	NA	21366349	21373608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_21366514_21367376_21367430_21367930_21368048_21369770_21369933_21371334_21371457_21373289
transcript_28763.nnic	chr12	+	788	5	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	1	-216	combination_of_known_splicesites	FALSE	canonical	1	8	junction_4	187.52666477064	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTTCTGTTCATGATTA	NA	False	NA	5	True	ATTAAA	-15	NA	21366404	21373604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21373289
transcript_28766.known	chr12	+	1890	4	FSM	ENSMUSG00000062054.8	ENSMUST00000223345.2	1890	4	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_2	19.3964487013015	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTTGGTGAATATGCAA	NA	False	NA	NA	False	ATTAAA	-13	NA	21366414	21371359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770
transcript_28768.known	chr12	-	1970	7	FSM	ENSMUSG00000076432.14	ENSMUST00000155480.9	1970	7	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_1	1514.35583114846	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTATTATGGCTTTGTA	NA	False	NA	NA	False	AATAAA	-17	NA	21467589	21440332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_21441417_21441717_21441801_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
transcript_28770.known	chr12	-	2197	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGGCTGGTATTAGAAT	NA	False	NA	-12	True	AATAAA	-18	NA	21467638	21440071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
transcript_2878.nic	chr1	+	476	2	ISM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	-52	25172	6	-6487	5prime_fragment	FALSE	canonical	3	358	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGCAAAACCTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	78635547	78659512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_78635821_78659309
transcript_28782.known	chr12	-	2110	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	0	0	0	0	multi-exon	FALSE	canonical	3	3292	junction_3	152.582764426393	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	AATAAA	-20	NA	21467437	21440329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
transcript_28786.nic	chr12	+	501	5	NIC	ENSMUSG00000109975.2	novel	363	4	NA	NA	-36	4	combination_of_known_junctions	FALSE	canonical	3	112	junction_2	32.0507410210747	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAAAGGCGTTTTTTTTTT	6064	False	NA	NA	False	ACTAAA	-22	NA	21593271	21604526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_21593347_21595309_21595401_21599867_21599956_21604009_21604108_21604377
transcript_28787.nic	chr12	+	663	5	NIC	ENSMUSG00000109975.2	novel	363	4	NA	NA	-36	166	combination_of_known_junctions	FALSE	canonical	3	112	junction_2	32.0507410210747	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	6064	False	NA	NA	False	ATTAAA	-18	NA	21593271	21604688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_21593347_21595309_21595401_21599867_21599956_21604009_21604108_21604377
transcript_28789.known	chr12	+	363	4	FSM	ENSMUSG00000109975.2	ENSMUST00000211164.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	54.7783412186483	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGACAAAGGCGTTTTTT	6100	False	NA	NA	False	ACTAAA	-18	NA	21593307	21604522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_21593347_21595309_21595401_21599867_21599956_21604377
transcript_2879.nic	chr1	+	620	2	ISM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	-52	25028	6	-6343	5prime_fragment	FALSE	canonical	3	358	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTATTGGGAACACGTGAA	NA	False	NA	NA	False	GATAAA	-38	NA	78635547	78659656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_78635821_78659309
transcript_28792.known	chr12	+	357	4	FSM	ENSMUSG00000109975.2	ENSMUST00000209258.2	357	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	78.4106001904221	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCTGGACCCTGACATG	8102	False	NA	NA	False	NA	NA	NA	21595309	21604475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_21595383_21599867_21599956_21604009_21604108_21604377
transcript_28793.known	chr12	+	321	3	FSM	ENSMUSG00000109975.2	ENSMUST00000210709.2	321	3	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	13	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGTTCTTAAAGTCAAG	6100	False	NA	NA	False	AATAAA	-23	NA	21593307	21600058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_21593347_21595309_21595401_21599867
transcript_28801.known	chr12	-	1004	3	FSM	ENSMUSG00000073164.12	ENSMUST00000141777.8	1004	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCCAGCTGAGCTCATC	NA	False	NA	-7	True	NA	NA	NA	23060210	23009677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_23010256_23042788_23042850_23059845
transcript_28805.known	chr12	+	2209	15	FSM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	28.2355254592363	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548357	24608538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
transcript_28808.known	chr12	+	1840	14	FSM	ENSMUSG00000059669.9	ENSMUST00000221372.2	1840	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	59.0833329855924	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548628	24608538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
transcript_28809.known	chr12	+	1484	12	FSM	ENSMUSG00000059669.9	ENSMUST00000223503.2	1484	12	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	27.2065864655498	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTCCCCGTTTTTTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	24548627	24599724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417
transcript_28811.known	chr12	+	521	4	FSM	ENSMUSG00000059669.9	ENSMUST00000222710.2	521	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	107.002596022506	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	24548609	24559747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452
transcript_28812.known	chr12	+	3469	16	FSM	ENSMUSG00000020656.17	ENSMUST00000085553.13	3469	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	7.44938476206816	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTGTCGGCTCCTGTTA	NA	False	NA	NA	False	TTTAAA	-33	NA	24622281	24667387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24622458_24625912_24626100_24628018_24628090_24631326_24631718_24632883_24632961_24634303_24634461_24634832_24634945_24636054_24636150_24652906_24653066_24658027_24658080_24658431_24658572_24659702_24659741_24661821_24661914_24662153_24662240_24664393_24664459_24665816
transcript_28818.known	chr12	+	4086	4	FSM	ENSMUSG00000020653.13	ENSMUST00000020982.7	4086	4	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_3	19.258475767539	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGTGTTATATAACTGT	NA	False	NA	18	True	TATAAA	-29	NA	24701272	24712788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24701566_24703557_24703810_24704841_24705776_24710181
transcript_28825.known	chr12	+	2193	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	0	0	0	0	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	6425	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTTTGGGTAAAATGTAC	NA	False	NA	72	True	ATTAAA	-26	NA	24758239	24764145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
transcript_28881.known	chr12	+	2351	13	FSM	ENSMUSG00000020646.18	ENSMUST00000110942.11	2351	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	25.3874148611735	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAGGGAAGCTAAGATAA	NA	False	NA	NA	False	NA	NA	NA	24881621	25009873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24974197_24974294_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
transcript_28886.known	chr12	+	6792	12	FSM	ENSMUSG00000020646.18	ENSMUST00000221952.2	6792	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	37.4053074415034	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCTGTGTTTGTGTTTGC	NA	False	NA	NA	False	ATTAAA	-14	NA	24881607	25014396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
transcript_28904.known	chr12	+	2467	10	FSM	ENSMUSG00000020646.18	ENSMUST00000078902.8	2467	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	44.1864735461481	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAGATTCTATCTAAACA	NA	False	NA	NA	False	ATTAAA	-31	NA	24881616	25010304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_24881774_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
transcript_2891.known	chr1	+	1424	4	FSM	ENSMUSG00000026248.10	ENSMUST00000027464.9	1424	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	2.44948974278318	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTTTCCTTTCTTTAT	NA	False	NA	13	True	AATAAA	-15	NA	79753734	79759162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_79754029_79755574_79756044_79757204_79757384_79758680
transcript_28916.known	chr12	-	1270	3	FSM	ENSMUSG00000020644.10	ENSMUST00000020974.7	1270	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCGGGATTCTGAATGG	NA	False	NA	NA	False	AATAAA	-15	NA	25146091	25143799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_25144576_25145309_25145374_25145661
transcript_28918.known	chr12	-	4812	9	FSM	ENSMUSG00000020642.14	ENSMUST00000062149.6	4812	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	8.26041009877839	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTTGTGGTTTTGCAG	8872	False	NA	NA	False	NA	NA	NA	26465215	26357032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_26360789_26364018_26364109_26367647_26367796_26370950_26371159_26377276_26377338_26377501_26377607_26389304_26389451_26439392_26439575_26465099
transcript_28928.known	chr12	-	3782	6	FSM	ENSMUSG00000020641.17	ENSMUST00000020970.10	3782	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTTAGTATCTCTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	26506451	26492744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_26495570_26497150_26497184_26498581_26498732_26500544_26500775_26504016_26504179_26506069
transcript_2893.known	chr1	+	885	2	FSM	ENSMUSG00000026248.10	ENSMUST00000189176.2	885	2	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGGAGGTTTACGTTA	NA	False	NA	NA	False	AATAAA	-13	NA	79753832	79756263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_79754029_79755574
transcript_28930.known	chr12	+	3200	5	FSM	ENSMUSG00000020638.9	ENSMUST00000020969.5	3200	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	0.433012701892219	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTCGTCATCATTGCT	NA	False	NA	NA	False	AATAAA	-20	NA	26519202	26529836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_26520026_26521404_26521520_26523994_26524197_26527004_26527239_26528010
transcript_28931.known	chr12	-	954	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	0	0	0	0	multi-exon	TRUE	canonical	3	10789	junction_4	2567.89392736971	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTATGTCCTATTCTG	NA	False	NA	-7	True	NA	NA	NA	28685952	28680852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
transcript_28936.known	chr12	-	820	6	FSM	ENSMUSG00000061477.5	ENSMUST00000221871.2	820	6	0	0	0	0	multi-exon	FALSE	canonical	3	10789	junction_4	2615.27425712869	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGTTGTAGTAACTTGT	NA	False	NA	-11	True	AATAAA	-15	NA	28685856	28681082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578
transcript_28947.nic	chr12	-	407	5	ISM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	35	2935	35	-320	5prime_fragment	FALSE	canonical	3	10789	junction_2	2744.39158785695	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCAGAAGCGCCCCAGAA	NA	False	NA	NA	False	NA	NA	NA	28685917	28683787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
transcript_28948.known	chr12	-	697	4	FSM	ENSMUSG00000061477.5	ENSMUST00000220860.2	697	4	0	0	0	0	multi-exon	FALSE	canonical	3	10789	junction_2	2877.18963960011	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTGGGATTAAAGGTGTG	NA	False	NA	NA	False	NA	NA	NA	28685695	28683467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_28683832_28684207_28684352_28685414_28685487_28685578
transcript_28951.nnic	chr12	+	1428	8	NNC	ENSMUSG00000020630.10	novel	1455	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	86.1162005664439	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACATCTAGTTTGAGTTA	NA	False	NA	13	True	AATAAA	-21	NA	28699599	28709588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_28699816_28702023_28702140_28703061_28703196_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
transcript_28952.known	chr12	+	1455	8	FSM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	0	0	0	0	multi-exon	TRUE	canonical	3	155	junction_3	35.1318217284442	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACATCTAGTTTGAGTTA	NA	False	NA	13	True	AATAAA	-21	NA	28699600	28709588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
transcript_2896.known	chr1	-	4551	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTAATTTTGTTTGCT	NA	False	NA	0	True	AATAAA	-23	NA	79739486	79679978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
transcript_28963.known	chr12	+	1652	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTCTCTCGAGAGTTCT	NA	False	NA	15	True	NA	NA	NA	28725229	28732174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
transcript_28967.known	chr12	-	3377	12	FSM	ENSMUSG00000020628.17	ENSMUST00000020954.15	3377	12	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_11	21.61993264567	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCCTGAGGAGACATGAG	8249	False	NA	-30	True	AATAAA	-19	NA	28800452	28740627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800160
transcript_28968.known	chr12	-	3230	12	FSM	ENSMUSG00000020628.17	ENSMUST00000168129.10	3230	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_11	21.4240924087157	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTGAGGAGACATGAGC	8230	False	NA	-29	True	AATAAA	-20	NA	28800471	28740626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800327
transcript_2897.known	chr1	-	2210	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	6.12244844812923	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGCGTGGTGGTGCAC	NA	False	NA	NA	False	TATAAA	-35	NA	79836413	79771913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
transcript_28986.known	chr12	-	3718	3	FSM	ENSMUSG00000020628.17	ENSMUST00000221335.2	3718	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	25.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAAAAAAAAAAAGC	8236	False	NA	NA	False	NA	NA	NA	28800465	28785506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_28787849_28796297_28797536_28800327
transcript_28989.known	chr12	+	1747	10	FSM	ENSMUSG00000036613.9	ENSMUST00000035657.9	1747	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	106.926188918072	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	1150	False	NA	7	True	NA	NA	NA	28801853	28917490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28843853_28843936_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
transcript_28990.known	chr12	+	4091	9	FSM	ENSMUSG00000036613.9	ENSMUST00000221877.2	4091	9	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_3	17.1641887370187	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATCTAACTTGTCTAGC	1098	False	NA	NA	False	ATTAAA	-19	NA	28801801	28919864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
transcript_28995.known	chr12	+	489	2	FSM	ENSMUSG00000036613.9	ENSMUST00000222407.2	489	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAATTTGTAATGATTGC	1134	False	NA	NA	False	NA	NA	NA	28801837	28802741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_28802004_28802418
transcript_28997.known	chr12	+	2735	7	FSM	ENSMUSG00000061911.16	ENSMUST00000218198.2	2735	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.687184270936277	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCACTGTGGAGTGGCTC	NA	False	NA	NA	False	ATTAAA	-17	NA	29890208	29907801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_29890392_29892393_29892609_29899243_29899495_29901532_29901770_29904231_29904354_29905213_29905283_29906143
transcript_28999.known	chr12	-	3299	17	FSM	ENSMUSG00000020673.15	ENSMUST00000021005.15	3299	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	1.72753437013566	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCTTTATAAGCCGTAG	NA	False	NA	NA	False	ATTAAA	-20	NA	30182623	30104657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_30105163_30124092_30124217_30125775_30125876_30128057_30128190_30134606_30134778_30142543_30142753_30144777_30145016_30148167_30148339_30150317_30150577_30153050_30153552_30153902_30154110_30155905_30156036_30166811_30166945_30169402_30169555_30175238_30175324_30181799_30181901_30182542
transcript_29.known	ERCC-00078	+	977	1	FSM	ERCC-00078A	DQ883673	977	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00078_+_0_1000
transcript_290.nic	chr1	+	488	4	ISM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-129	11135	-129	-11135	5prime_fragment	FALSE	canonical	3	1526	junction_2	170.069266934257	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAGAAAAAAGAGCCT	NA	False	NA	NA	False	GATAAA	-36	NA	4927907	4956993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966
transcript_29000.known	chr12	-	2411	17	FSM	ENSMUSG00000020672.15	ENSMUST00000021004.14	2411	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	1.4142135623731	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTCTTGAGTTTCCTTTC	NA	False	NA	NA	False	ATTAAA	-13	NA	30423374	30224481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_30225259_30245536_30245648_30251273_30251367_30276766_30276974_30279574_30279647_30286587_30286705_30293302_30293342_30295116_30295247_30307964_30308093_30317029_30317122_30326660_30326749_30338124_30338167_30338270_30338315_30357170_30357229_30357325_30357383_30362534_30362673_30423156
transcript_29013.nnic	chr12	+	2600	6	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	3	81	junction_5	38.6812616133445	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTGTGCTTTCGTGT	NA	False	NA	NA	False	AATAAA	-14	NA	30634422	30641216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650_30640423_30640797
transcript_29015.known	chr12	+	2971	5	FSM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	9.17877987534291	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30634424	30641214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650
transcript_2902.known	chr1	-	1129	1	FSM	ENSMUSG00000026249.11	ENSMUST00000191026.2	1129	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-29	NA	79836352	79835223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_79835200_79836400
transcript_29026.known	chr12	-	2754	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTTGGGATTTTAATTG	NA	False	NA	NA	False	ATTAAA	-23	NA	30961588	30943654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
transcript_29027.known	chr12	-	3066	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	0	0	0	0	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTTCTGTTGGTTTCC	NA	False	NA	NA	False	AATAAA	-32	NA	30961570	30943324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
transcript_29030.known	chr12	-	668	6	FSM	ENSMUSG00000044573.17	ENSMUST00000219697.2	668	6	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_3	322.338331571037	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTCCTAAGCCCCACCAT	NA	False	NA	NA	False	NA	NA	NA	30961570	30945874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954983_30955067_30955142_30961488
transcript_29038.known	chr12	+	1750	10	FSM	ENSMUSG00000020669.16	ENSMUST00000020997.15	1750	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	6.36153564813317	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTTGTGTTCACTCAAT	8039	False	NA	16	True	AATAAA	-24	NA	30961666	31010161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_30962227_30972233_30972345_30974762_30974877_30976808_30976874_30989572_30989686_30990289_30990419_30991965_30992129_30992788_30992868_31008846_31008904_31009802
transcript_29039.known	chr12	+	3088	2	FSM	ENSMUSG00000036136.10	ENSMUST00000041133.10	3088	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTTGGTATGTGCGGTT	NA	False	NA	NA	False	NA	NA	NA	31123859	31130250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_31125322_31128624
transcript_2904.known	chr1	-	4709	16	FSM	ENSMUSG00000004364.15	ENSMUST00000163119.8	4709	16	0	0	0	0	multi-exon	FALSE	canonical	3	483	junction_14	55.1621448297854	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTCTTTATGTCAGTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	80318197	80242639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_80245005_80246926_80247073_80249240_80249428_80254130_80254266_80255091_80255189_80255680_80255806_80258549_80258658_80259099_80259271_80260339_80260517_80261392_80261539_80264615_80264845_80266460_80266576_80267798_80267960_80281796_80281911_80300575_80300774_80317962
transcript_29040.known	chr12	-	207	1	FSM	ENSMUSG00000112567.2	ENSMUST00000219694.2	207	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAACAAGAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	31308856	31308649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_31308600_31308900
transcript_29041.known	chr12	+	5557	34	FSM	ENSMUSG00000002900.18	ENSMUST00000169088.8	5557	34	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	26.2601941375773	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGGGGCTGTAGAGGG	NA	False	NA	NA	False	NA	NA	NA	31315232	31379492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_31315344_31315478_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
transcript_29043.known	chr12	+	5778	33	FSM	ENSMUSG00000002900.18	ENSMUST00000239496.2	5778	33	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_13	20.6626313894794	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATCCTATGTTTCTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	31315292	31379638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
transcript_29049.nic	chr12	+	4794	28	ISM	ENSMUSG00000002900.18	ENSMUST00000239496.2	5778	33	-47	5380	13	-195	5prime_fragment	FALSE	canonical	3	88	junction_13	16.006771543749	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGGACAAGAGCAACGAGGA	NA	False	NA	NA	False	AAGAAA	-3	NA	31315245	31374258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174
transcript_29052.known	chr12	-	2544	14	FSM	ENSMUSG00000020664.11	ENSMUST00000110857.5	2544	14	0	0	0	0	multi-exon	FALSE	canonical	3	710	junction_4	70.0417457938204	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTACAATTTATATTTATT	NA	False	NA	NA	False	AGTAAA	-18	NA	31401452	31381275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
transcript_29058.known	chr12	-	3900	6	FSM	ENSMUSG00000020659.17	ENSMUST00000101499.10	3900	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_4	37.6542162313864	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCTAGATGAGTCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	31549615	31534934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544580_31544749_31549521
transcript_29064.known	chr12	-	6155	8	FSM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	46.0678293167714	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGACCACTGGTGTAT	NA	False	NA	NA	False	CATAAA	-16	NA	31684634	31640965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
transcript_29069.nic	chr12	-	620	6	ISM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	-29	26160	-6	16948	5prime_fragment	FALSE	canonical	3	313	junction_1	47.6931860961291	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAATAGAAAGCAAGGAGAA	NA	False	NA	NA	False	AATAAA	-4	NA	31684663	31667125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
transcript_29073.known	chr12	-	1949	7	FSM	ENSMUSG00000020650.16	ENSMUST00000020979.9	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	46.7618077780005	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATAATTGGAGTTTT	NA	False	NA	NA	False	TATAAA	-10	NA	31684598	31645359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261
transcript_29076.known	chr12	-	1773	7	FSM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	0	0	0	0	multi-exon	FALSE	canonical	2	86	junction_6	14.7016627933336	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGTATGACTCGCCTGTA	9060	False	NA	-5	True	AATAAA	-17	NA	31704825	31690048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
transcript_29077.nnic	chr12	-	1809	7	NNC	ENSMUSG00000020648.4	novel	1773	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	41.3145118437685	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGTATGACTCGCCTGTA	9044	False	NA	-5	True	AATAAA	-17	NA	31704841	31690048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_31690944_31691500_31691748_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
transcript_29080.known	chr12	+	2997	23	FSM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_22	24.2086317506725	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTGTTTCTTCCTTCCA	NA	False	NA	12	True	AATAAA	-19	NA	31704867	31987629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643_31975791_31987175
transcript_29081.nic	chr12	+	2584	22	ISM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	-8	11806	-8	-198	5prime_fragment	FALSE	canonical	3	60	junction_7	21.3659402170966	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCTTCCTCTTTCTGT	NA	False	NA	NA	False	ACTAAA	-16	NA	31704859	31975823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643
transcript_29082.nic	chr12	+	3966	22	ISM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	-8	10424	-8	1184	5prime_fragment	FALSE	canonical	3	60	junction_7	21.3659402170966	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAGCACCACAGGATA	NA	False	NA	NA	False	AATAAA	-23	NA	31704859	31977205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643
transcript_29089.nic	chr12	-	2737	11	NIC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	-11	-206	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	68.426310729134	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTTGATTTCTGG	NA	False	NA	-12	True	AATAAA	-12	NA	32000244	31976458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000103
transcript_29091.known	chr12	-	3142	11	FSM	ENSMUSG00000002996.18	ENSMUST00000172314.9	3142	11	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_10	30.1004983347452	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAACCCTGACTTCATTT	NA	False	NA	NA	False	AGTAAA	-10	NA	32000534	31976252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
transcript_29095.known	chr12	-	2733	9	FSM	ENSMUSG00000002996.18	ENSMUST00000167458.9	2733	9	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	33.3164280048147	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCGCTTTCTCTACAT	NA	False	NA	NA	False	AATAAA	-42	NA	32000222	31979381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
transcript_29100.known	chr12	-	979	3	FSM	ENSMUSG00000002996.18	ENSMUST00000175666.2	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	45	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTAGATTGTTTCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	32000233	31989749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_31990506_31993827_31994012_32000194
transcript_29104.known	chr12	+	4527	11	FSM	ENSMUSG00000020572.9	ENSMUST00000020886.9	4527	11	0	0	0	0	multi-exon	FALSE	canonical	3	823	junction_5	70.9532240282286	368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTGTTAGTGAAATGTTA	NA	False	NA	-7	True	AATAAA	-18	NA	32870333	32903348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_32870626_32880165_32880323_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
transcript_29120.known	chr12	+	4999	6	FSM	ENSMUSG00000020570.16	ENSMUST00000076698.13	4999	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	113.462592954683	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTTTTTTAAAAATGG	8132	False	NA	NA	False	NA	NA	NA	33003889	33029859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_33004018_33004286_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
transcript_29122.known	chr12	+	2019	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAATGCCCCGTT	8425	False	NA	NA	False	AATAAA	-7	NA	33004182	33026903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
transcript_29123.known	chr12	+	673	4	FSM	ENSMUSG00000020562.8	ENSMUST00000020878.8	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	13.0213499897497	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATGTGTCTGGTTTCA	NA	False	NA	4	True	AATAAA	-14	NA	33444852	33451266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_33445198_33448277_33448443_33448546_33448635_33451191
transcript_29127.known	chr12	+	4325	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCTTGTACAGCGACAT	NA	False	NA	NA	False	AATAAA	-37	NA	33479633	33491391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
transcript_29131.known	chr12	+	1628	2	FSM	ENSMUSG00000035799.7	ENSMUST00000049089.7	1628	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTAAAGTTTGGTCTAT	NA	False	NA	NA	False	AATAAA	-25	NA	34007669	34009828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_34008638_34009168
transcript_29134.known	chr12	+	6231	26	FSM	ENSMUSG00000020590.17	ENSMUST00000048519.17	6231	26	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_14	10.0218960281975	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGTGTTTACTTGGCA	NA	False	NA	NA	False	AATAAA	-16	NA	35097184	35197478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916_35173025_35174428_35174540_35182019_35182182_35183307_35183380_35188024_35188171_35188398_35188468_35190166_35190280_35194087
transcript_2914.known	chr1	+	3636	7	FSM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	15.8893745069534	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	NA	False	NA	14	True	AATAAA	-20	NA	82294172	82423087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
transcript_29145.nic	chr12	+	2147	19	ISM	ENSMUSG00000020590.17	ENSMUST00000163677.3	3681	23	-17	11695	-17	0	5prime_fragment	TRUE	canonical	3	72	junction_14	10.2089285540757	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAGAGGAAAAAGGATT	NA	False	NA	NA	False	AAAAAG	-30	NA	35097167	35172987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916
transcript_29146.known	chr12	+	1145	7	FSM	ENSMUSG00000020590.17	ENSMUST00000222101.2	1145	7	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	5.7373048260195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACTGTTTAATTTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	35097215	35141967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567
transcript_29147.known	chr12	-	5548	11	FSM	ENSMUSG00000019256.18	ENSMUST00000116436.9	5548	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	5.59016994374947	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTTTTCATGCAAGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	35585037	35547972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_35550700_35553711_35554976_35556243_35556386_35557418_35557529_35558128_35558332_35559964_35560096_35561057_35561170_35562857_35562948_35565019_35565124_35576679_35576868_35584560
transcript_29151.nic	chr12	-	807	2	ISM	ENSMUSG00000019256.18	ENSMUST00000110811.3	1155	9	-458	21722	-43	-12176	5prime_fragment	FALSE	canonical	3	52	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCCATGAGTGCAAATGT	NA	False	NA	NA	False	TTTAAA	-34	NA	35585080	35576580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_35576868_35584560
transcript_29152.known	chr12	+	784	8	FSM	ENSMUSG00000020581.12	ENSMUST00000020898.12	784	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.989743318610787	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTTGTTTCTATTGGTT	NA	False	NA	NA	False	AATAAA	-24	NA	36042905	36054086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_36042969_36045508_36045655_36045893_36045958_36046073_36046127_36047421_36047496_36048581_36048646_36051684_36051769_36053850
transcript_29153.known	chr12	-	1932	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	454	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGGGTGTTTAAATCAA	NA	False	NA	-4	True	AATAAA	-20	NA	36092488	36064555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
transcript_29167.known	chr12	-	1871	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATGGTCAGAGCGTGT	NA	False	NA	-11	True	AATAAA	-21	NA	36206824	36141833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
transcript_29176.nic	chr12	-	1649	11	ISM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	-264	1143	3	-1143	5prime_fragment	FALSE	canonical	3	931	junction_8	79.090075230714	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAGAAGAAGGTAACTTCA	NA	False	NA	NA	False	AAGAAA	-21	NA	36207088	36142976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
transcript_29177.known	chr12	-	2533	11	FSM	ENSMUSG00000020547.6	ENSMUST00000221521.2	2533	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	319.117157169589	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGATCCTGTAGCAGCG	NA	False	NA	NA	False	NA	NA	NA	36206765	36149423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_36150743_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
transcript_29179.known	chr12	+	2456	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	20.5882622678524	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGTTTCATAATTCGT	NA	False	NA	21	True	AATAAA	-20	NA	36207112	36247290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
transcript_29186.known	chr12	-	1567	4	FSM	ENSMUSG00000020547.6	ENSMUST00000222842.2	1567	4	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_1	59.7345982008938	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAGTGAATTTTAAGGCC	NA	False	NA	NA	False	TTTAAA	-13	NA	36206720	36172766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_36174038_36179990_36180168_36184889_36184955_36206666
transcript_29190.known	chr12	+	1522	7	FSM	ENSMUSG00000036188.5	ENSMUST00000220580.2	1522	7	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	23.4858113194612	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTATAGCCGAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	36207156	36238225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648
transcript_29191.known	chr12	+	2690	10	FSM	ENSMUSG00000043153.7	ENSMUST00000062041.6	2690	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	4.59468291736341	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGTCTCCTACAACAT	NA	False	NA	NA	False	AATAAA	-14	NA	36431517	36739443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_36432024_36440344_36440622_36476287_36476438_36523100_36523206_36526698_36526745_36551976_36552072_36571431_36571522_36571957_36572051_36597827_36597960_36738247
transcript_29194.known	chr12	+	1456	10	FSM	ENSMUSG00000043153.7	ENSMUST00000221177.2	1456	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.51494009523069	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAAGAATCTGTTCACT	NA	False	NA	NA	False	AATAAA	-18	NA	36432178	36738591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_36432303_36440344_36440622_36476287_36476438_36523100_36523206_36526698_36526745_36551976_36552072_36571431_36571522_36571957_36572051_36597827_36597960_36738247
transcript_29197.known	chr12	+	3122	5	FSM	ENSMUSG00000043153.7	ENSMUST00000220519.2	3122	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	4.38035386698381	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAAAACTTGGAGTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	36431552	36528817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_36432024_36440344_36440622_36476287_36476438_36523100_36523206_36526698
transcript_29201.known	chr12	+	6576	13	FSM	ENSMUSG00000004151.18	ENSMUST00000095767.11	6576	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	7.23225798458238	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGGTTGTCGTGATCACT	325	False	NA	NA	False	AATAAA	-19	NA	38830080	38920483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_38830421_38830846_38830979_38831797_38831886_38833236_38833285_38843169_38843224_38877776_38877907_38881079_38881269_38885067_38885316_38902218_38902288_38904158_38904228_38906939_38907110_38911285_38911388_38915546
transcript_29203.known	chr12	-	3710	2	FSM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGCGTTAGACTATCAT	NA	False	NA	0	True	AATAAA	-16	NA	40087428	40083289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_40086833_40087261
transcript_29204.known	chr12	-	1200	2	FSM	ENSMUSG00000047446.19	ENSMUST00000101472.4	1200	2	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCTAGTGTTTTGTGCT	NA	False	NA	-7	True	AATAAA	-15	NA	40088024	40085820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_40086833_40087836
transcript_29209.known	chr12	-	2995	16	FSM	ENSMUSG00000002565.17	ENSMUST00000002640.6	2995	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTCTTGTATTGTAAC	NA	False	NA	NA	False	ATTAAA	-15	NA	40184227	40109771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_40110627_40111155_40111217_40113210_40113289_40118913_40119036_40119267_40119446_40123300_40123472_40126935_40127027_40127469_40127592_40129594_40129811_40130930_40131020_40131640_40131774_40134283_40134377_40154925_40155076_40174565_40174728_40177879_40178035_40183908
transcript_29212.known	chr12	-	3378	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_11	48.4295518005619	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGGGAGGTTTGCTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	40273188	40251565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
transcript_2922.known	chr1	+	3089	1	FSM	ENSMUSG00000026142.16	ENSMUST00000187475.2	3089	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAACTGCTGTTCTTTAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	82294362	82297451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82294400_82297500
transcript_29220.nic	chr12	-	859	5	ISM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	-67	12413	-67	0	5prime_fragment	FALSE	canonical	3	551	junction_4	49.1146617620441	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTAAGTATGAGATTAAAA	NA	False	NA	NA	False	NA	NA	NA	40273255	40263978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
transcript_29223.known	chr12	-	2438	13	FSM	ENSMUSG00000055917.16	ENSMUST00000069692.10	2438	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	159.233493824495	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCATTTTTACTTCTTC	NA	False	NA	NA	False	NA	NA	NA	40495773	40365044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40460574_40460953_40495664
transcript_29227.known	chr12	-	2188	12	FSM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_6	45.6703965821071	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCATTTTTACTTCTTC	NA	False	NA	NA	False	NA	NA	NA	40495901	40365044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
transcript_29230.nic	chr12	-	1090	8	ISM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	112	7297	-16	2132	5prime_fragment	FALSE	canonical	3	359	junction_2	44.603010788831	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTAAAGATACTTTTGGG	NA	False	NA	NA	False	AATAAA	-20	NA	40495789	40372341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
transcript_29235.known	chr12	+	1147	7	FSM	ENSMUSG00000056899.11	ENSMUST00000132121.8	1147	7	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	24.8310960960916	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTGTTTGGGTGTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	41074088	42002371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838_41160943_41675546_41675613_41750437_41750541_42001763
transcript_29236.known	chr12	-	2461	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	7	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACGTGCTTGGAATGAT	NA	False	NA	NA	False	AATAAA	-16	NA	44257109	44252341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_44254189_44254869_44255097_44256722
transcript_29239.known	chr12	+	13507	10	FSM	ENSMUSG00000036257.16	ENSMUST00000043082.16	13507	10	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	27.4419701988589	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGCTCCCTGAAGCCATA	NA	False	NA	NA	False	NA	NA	NA	44315930	44369315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_44316085_44329360_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44351693_44351889_44354701_44354898_44358107
transcript_29257.known	chr12	+	6275	28	FSM	ENSMUSG00000020598.17	ENSMUST00000110748.4	6275	28	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.90371811494761	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGGGTGGGGGGAGGGTG	NA	False	NA	NA	False	TTTAAA	-42	NA	44375668	44647543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_44375880_44434682_44434839_44503407_44503486_44579240_44579443_44584033_44584140_44586223_44586421_44587734_44587858_44591507_44591679_44592161_44592219_44594014_44594127_44596656_44596842_44598087_44598220_44606444_44606589_44609209_44609322_44610746_44610914_44611009_44611158_44613070_44613196_44615326_44615429_44616992_44617191_44617288_44617360_44618297_44618524_44618984_44619101_44620602_44620808_44622658_44622782_44623386_44623573_44636890_44637023_44637763_44637843_44645132
transcript_29259.known	chr12	-	4553	6	FSM	ENSMUSG00000046314.17	ENSMUST00000053768.14	4553	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7.73563184232549	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTTTCTCTCCTTTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	45121492	44899266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_44902661_44908007_44908166_44948656_44948823_44949642_44949774_45066249_45066439_45120977
transcript_29261.known	chr12	+	345	1	FSM	ENSMUSG00000112908.2	ENSMUST00000217815.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGAGGCCGTTTTGTAAG	NA	False	NA	NA	False	NA	NA	NA	47859687	47860032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_47859700_47860000
transcript_29262.known	chr12	-	3653	19	FSM	ENSMUSG00000002688.9	ENSMUST00000002765.9	3653	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	5.99897110519693	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGTGTCATACTAATCAA	NA	False	NA	-4	True	AATAAA	-14	NA	50695881	50388013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_50389004_50389836_50389923_50411294_50411563_50412396_50412496_50413084_50413247_50430182_50430290_50431925_50431999_50433998_50434052_50435035_50435316_50436692_50436771_50438108_50438233_50439617_50439823_50441381_50441460_50441612_50441824_50466635_50466660_50472221_50472383_50474885_50475018_50536685_50536825_50695498
transcript_29263.known	chr12	+	2926	16	FSM	ENSMUSG00000035293.14	ENSMUST00000119211.8	2926	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_11	51.696120636745	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCTCATAAATCAGAGAT	NA	False	NA	NA	False	AATAAA	-18	NA	51395070	51420050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51410734_51410804_51412037_51412343_51414557_51414740_51415828_51416002_51418342_51418534_51419212
transcript_29266.known	chr12	+	6803	15	FSM	ENSMUSG00000035293.14	ENSMUST00000054308.13	6803	15	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_10	21.5917595770389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATGTGAGATTTATTTCA	NA	False	NA	17	True	AATAAA	-18	NA	51394843	51423769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51412037_51412343_51414557_51414740_51415828_51416002_51418342_51418534_51419212
transcript_29276.known	chr12	+	2096	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_5	42.0133700610757	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTATTCTTGTTTGAA	NA	False	NA	15	True	AATAAA	-15	NA	51424362	51496884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
transcript_29278.nic	chr12	+	1326	15	ISM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	-48	27155	22	5731	5prime_fragment	FALSE	canonical	3	358	junction_5	38.7219286077287	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAGCAAGACTACTCTG	NA	False	NA	17	True	AAGAAA	-33	NA	51424314	51469729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689
transcript_29279.nic	chr12	+	1248	14	ISM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	-63	34558	7	-1672	5prime_fragment	TRUE	canonical	3	358	junction_5	39.7868581674934	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTATTGATCTGCACACA	NA	False	NA	NA	False	NA	NA	NA	51424299	51462326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297
transcript_29280.known	chr12	+	2749	14	FSM	ENSMUSG00000020952.11	ENSMUST00000219434.2	2749	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_13	120.151925523899	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACATTTTTTAAGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	51424362	51463998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462405
transcript_29281.nic	chr12	+	984	11	ISM	ENSMUSG00000020952.11	ENSMUST00000219434.2	2749	14	-59	4638	11	-4638	5prime_fragment	FALSE	canonical	3	358	junction_5	42.1521055227375	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAAAACAAGAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	51424303	51459360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286
transcript_29283.known	chr12	+	2456	12	FSM	ENSMUSG00000020953.18	ENSMUST00000085412.7	2456	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.34608870919344	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTATTTATTAACACTAG	NA	False	NA	NA	False	AATAAA	-17	NA	51640139	51652544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_51640189_51640387_51640441_51640520_51640575_51642117_51642275_51643226_51643361_51643797_51643861_51644810_51644856_51644934_51645083_51648596_51648701_51649429_51649657_51649978_51650496_51651639
transcript_29286.known	chr12	-	8988	43	FSM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_19	32.7528018915334	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACCTGTGTCGTGTTAC	NA	False	NA	-5	True	ATTAAA	-14	NA	51876319	51790504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816149_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
transcript_29287.known	chr12	-	3046	18	FSM	ENSMUSG00000020954.17	ENSMUST00000013130.15	3046	18	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	90.4848149144585	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAGAAAAAAGAAAGA	NA	False	NA	NA	False	TTTAAA	-27	NA	51738670	51656414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_51657056_51657142_51657230_51666596_51666705_51668562_51668704_51669958_51670127_51673892_51674015_51674295_51674344_51674487_51674664_51676156_51676291_51680361_51680503_51689886_51689998_51694776_51694919_51696886_51697014_51699454_51699629_51702184_51702267_51707933_51708008_51708392_51708497_51738204
transcript_29290.nnic	chr12	-	3105	17	NIC	ENSMUSG00000020954.17	novel	3046	18	NA	NA	-190	0	combination_of_known_splicesites	FALSE	canonical	3	58	junction_9	80.2484423524843	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAGAAAAAAGAAAGA	NA	False	NA	NA	False	TTTAAA	-27	NA	51738870	51656414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_51657056_51657142_51657230_51666596_51666705_51668562_51668704_51669958_51670127_51673892_51674015_51674295_51674344_51674487_51674664_51676156_51676291_51689886_51689998_51694776_51694919_51696886_51697014_51699454_51699629_51702184_51702267_51707933_51708008_51708392_51708497_51738204
transcript_29291.known	chr12	-	2791	16	FSM	ENSMUSG00000020954.17	ENSMUST00000169503.4	2791	16	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_9	54.1091078798713	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	TTTAAA	-14	NA	51738680	51656427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_51657056_51657142_51657230_51666596_51666705_51668562_51668704_51669958_51670127_51673892_51674015_51674295_51674344_51674487_51674664_51676156_51676291_51694776_51694919_51696886_51697014_51699454_51699629_51702184_51702267_51707933_51708008_51708392_51708497_51738204
transcript_29293.known	chr12	+	1035	6	FSM	ENSMUSG00000020955.10	ENSMUST00000021338.10	1035	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	14.8458748479165	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTGACGTTTGAGTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	51737819	51785715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_51738098_51763724_51763934_51767418_51767506_51769762_51769832_51777670_51777683_51785335
transcript_29295.nic	chr12	-	628	2	ISM	ENSMUSG00000020954.17	ENSMUST00000169503.4	2791	16	-124	52041	-124	-21588	5prime_fragment	FALSE	canonical	3	254	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGGTCAAGAGAATTTG	NA	False	NA	NA	False	NA	NA	NA	51738804	51708468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_51708497_51738204
transcript_2930.known	chr1	+	1894	9	FSM	ENSMUSG00000026150.15	ENSMUST00000078332.13	1894	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	190.780264637095	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702610	82730111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82719538_82719698_82724803_82724864_82728240_82728326_82729305
transcript_29301.nnic	chr12	-	1387	3	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	-6	-1393	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	74	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	3	True	AATAAA	-20	NA	52053290	52045682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_52046657_52051661_52051732_52052947
transcript_29302.known	chr12	-	2564	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	5	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACTACAGCACTCTATG	NA	False	NA	NA	False	AATAAA	-21	NA	52053284	52044289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_52046657_52051661_52051732_52053157
transcript_29304.known	chr12	+	2987	11	FSM	ENSMUSG00000035142.19	ENSMUST00000040090.16	2987	11	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_4	16.265300489078	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGATATCAATATACTTC	NA	False	NA	NA	False	NA	NA	NA	52144519	52359527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484
transcript_29310.nnic	chr12	+	1615	2	NNC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	-93	-28116	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_1	0	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAATAGAAATGAAGGAG	NA	False	NA	NA	False	AAAAAG	-40	NA	52550661	52564306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_52550832_52562861
transcript_29314.nnic	chr12	+	4003	2	NNC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	-38	-25673	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_1	0	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGTTTATATTTACATT	NA	False	NA	NA	False	AGTAAA	-13	NA	52550716	52566749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_52550832_52562861
transcript_29319.known	chr12	-	2662	5	FSM	ENSMUSG00000035105.6	ENSMUST00000039516.4	2662	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	5.24404424085076	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTTGGTTCATTTCCAT	NA	False	NA	NA	False	NA	NA	NA	54250646	54225766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54227442_54228416_54228491_54230665_54230803_54232326_54232447_54249990
transcript_29320.nic	chr12	-	993	4	ISM	ENSMUSG00000035105.6	ENSMUST00000039516.4	2662	5	-22	2666	-22	-2666	5prime_fragment	FALSE	canonical	3	55	junction_2	5.71547606649408	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAGGAATTTAACTAGTAA	NA	False	NA	NA	False	AAAAAG	-4	NA	54250668	54228432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_54228491_54230665_54230803_54232326_54232447_54249990
transcript_29321.known	chr12	-	1346	2	FSM	ENSMUSG00000044408.8	ENSMUST00000056228.8	1346	2	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	0	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTCTTTTATGGTTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	54703358	54692176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54693321_54703156
transcript_29323.known	chr12	-	2658	7	FSM	ENSMUSG00000054302.16	ENSMUST00000163433.8	2658	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	149.586559853781	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACATAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	54742669	54718439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54718648_54718863_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_29329.known	chr12	-	4186	6	FSM	ENSMUSG00000054302.16	ENSMUST00000161592.8	4186	6	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_3	29.9973332148043	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTAAGTCCTTTATTTG	NA	False	NA	NA	False	ATTAAA	-5	NA	54742666	54717124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_29335.known	chr12	-	676	4	FSM	ENSMUSG00000054302.16	ENSMUST00000160085.2	676	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	197.249982396845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGCAATAACCTTATCTAAT	NA	False	NA	NA	False	NA	NA	NA	54742647	54736895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54737142_54738784_54738881_54739559_54739742_54742495
transcript_29336.known	chr12	-	590	3	FSM	ENSMUSG00000054302.16	ENSMUST00000067272.9	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	216.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGAAAAGGAGTGGTTA	NA	False	NA	-10	True	ATTAAA	-14	NA	54742682	54720255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54720576_54739658_54739742_54742495
transcript_29337.nic	chr12	-	475	3	ISM	ENSMUSG00000054302.16	ENSMUST00000160085.2	676	4	-45	1889	-10	-1889	5prime_fragment	FALSE	canonical	3	393	junction_1	26	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTAGCATTTAGCTTAG	NA	False	NA	NA	False	AAAACA	-2	NA	54742692	54738784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_54738881_54739559_54739742_54742495
transcript_29338.nic	chr12	-	316	2	ISM	ENSMUSG00000054302.16	ENSMUST00000160085.2	676	4	-45	2727	-10	-2727	5prime_fragment	FALSE	canonical	3	445	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGAACTAAACTCC	NA	False	NA	NA	False	AAAAAG	-4	NA	54742692	54739622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_54739742_54742495
transcript_29343.known	chr12	-	1928	14	FSM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_2	126.191832929968	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTGAAGGTCTTTTCT	NA	False	NA	-10	True	AATAAA	-20	NA	54842488	54793133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
transcript_29348.nic	chr12	-	1088	10	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	-43	10526	-43	0	5prime_fragment	FALSE	canonical	3	826	junction_9	114.99565209172	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAATAAAAATT	NA	False	NA	-32	True	NA	NA	NA	54842531	54803659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
transcript_2935.known	chr1	+	1706	8	FSM	ENSMUSG00000026150.15	ENSMUST00000073025.12	1706	8	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_5	154.121870675152	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAATGTCTATGGAAAG	NA	False	NA	10	True	AATAAA	-10	NA	82702639	82730108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82724803_82724864_82728240_82728326_82729305
transcript_29350.nic	chr12	-	579	7	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	18	19300	2	0	5prime_fragment	FALSE	canonical	3	826	junction_6	134.266732869894	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCGAGGATTTCTTTAAA	NA	False	NA	NA	False	AATAAA	-8	NA	54842470	54812433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
transcript_29351.known	chr12	-	436	6	FSM	ENSMUSG00000005656.10	ENSMUST00000219781.2	436	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	452.654128446875	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCGAGGATTTCTTTAAA	NA	False	NA	NA	False	AATAAA	-8	NA	54842449	54812433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54812465_54814803_54814928_54830187_54830299_54830799_54830905_54842238_54842287_54842432
transcript_29352.nic	chr12	-	625	6	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	-43	21654	-43	0	5prime_fragment	FALSE	canonical	3	826	junction_5	145.878031245284	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAGTAGCAGTGGAAGTT	NA	False	NA	NA	False	AATACA	-25	NA	54842531	54814787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
transcript_29354.known	chr12	-	2940	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAAAGCTGTTGAGATG	NA	False	NA	-11	True	AATAAA	-12	NA	54909662	54905601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
transcript_29355.known	chr12	-	2726	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGAGATGTGTTTACT	NA	False	NA	-3	True	AATAAA	-20	NA	54909583	54905593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
transcript_29356.known	chr12	-	1128	4	FSM	ENSMUSG00000062929.9	ENSMUST00000221374.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	123.758725842755	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909583	54907080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54908023_54908121_54908199_54908564_54908619_54909528
transcript_29359.known	chr12	-	474	4	FSM	ENSMUSG00000062929.9	ENSMUST00000221088.2	474	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	144.270579121316	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTGTTTTTTTTTGTTT	NA	False	NA	NA	False	GGGGCT	-41	NA	54909239	54907834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909195
transcript_29365.known	chr12	-	5788	27	FSM	ENSMUSG00000035021.14	ENSMUST00000173433.8	5788	27	0	0	0	0	multi-exon	TRUE	canonical	2	19	junction_26	7.265566842199	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGAATTCTGAAGTT	NA	False	NA	-8	True	AATAAA	-18	NA	55033292	54940335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_54941287_54941742_54941831_54942814_54942958_54945122_54945584_54946784_54947012_54947095_54947344_54955783_54955933_54958094_54958247_54959361_54959526_54963252_54963853_54965222_54965348_54967822_54967931_54969227_54969394_54969824_54970050_54970169_54970266_54974348_54974496_54976311_54976451_54977036_54977133_54981524_54981692_54982266_54982367_54988286_54988422_54990761_54990850_54993586_54993689_55001482_55001627_55021888_55022168_55032450_55032593_55032946
transcript_2937.known	chr1	+	1715	8	FSM	ENSMUSG00000026150.15	ENSMUST00000161648.8	1715	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	210.496982381783	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702645	82730111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82714733_82714809_82728240_82728326_82729305
transcript_29370.known	chr12	-	1105	8	FSM	ENSMUSG00000062198.6	ENSMUST00000021406.6	1105	8	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	27.3898536256157	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGCTCTTTTATTTGT	NA	False	NA	1	True	AATAAA	-40	NA	55126895	55092445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
transcript_29371.nnic	chr12	-	1124	8	Fusion	ENSMUSG00000062198.6_ENSMUSG00000112022.3	novel	1105	8	NA	NA	-89	0	multi-exon	FALSE	canonical	3	143	junction_4	24.4423520027957	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55201770	55092460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55201606
transcript_29376.nic	chr12	-	2063	5	ISM	ENSMUSG00000062198.6	ENSMUST00000222572.2	798	6	-367	2936	-361	-2492	5prime_fragment	FALSE	canonical	3	37	junction_1	70.9449610613749	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGATAAGTGATCAGCATA	NA	False	NA	NA	False	NA	NA	NA	55127256	55103030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55126765
transcript_29378.known	chr12	-	4110	5	FSM	ENSMUSG00000062198.6	ENSMUST00000156852.2	4110	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	29.9864552756741	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAGAAATTAACTA	NA	False	NA	NA	False	NA	NA	NA	55126893	55100538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
transcript_2938.known	chr1	+	1645	8	FSM	ENSMUSG00000026150.15	ENSMUST00000160786.8	1645	8	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_5	134.32947615198	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTATAAATGTAGTGTAT	NA	False	NA	-27	True	TTTAAA	-13	NA	82702660	82730071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82724803_82724864_82728240_82728326_82729305
transcript_29389.known	chr12	+	4498	16	FSM	ENSMUSG00000073079.7	ENSMUST00000220578.2	4498	16	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	133.408578767967	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGGATGAAAGTCATGT	2576	False	NA	NA	False	NA	NA	NA	55127046	55162152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
transcript_29394.known	chr12	+	1026	4	FSM	ENSMUSG00000073079.7	ENSMUST00000221479.2	1026	4	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	150.738183616494	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATATTTCTGTGTGTC	2874	False	NA	NA	False	AATAAA	-16	NA	55127344	55138680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033
transcript_29396.known	chr12	+	3922	5	FSM	ENSMUSG00000095595.3	ENSMUST00000177768.3	3922	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTGCAGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	55171253	55188889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55171508_55177400_55177575_55182452_55182520_55183902_55184001_55185560
transcript_29399.known	chr12	+	3646	16	FSM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_7	105.372650889856	367	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATTCTTAGAAAAGTATT	2354	False	NA	NA	False	NA	NA	NA	55201888	55236358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
transcript_29405.known	chr12	+	3863	5	FSM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTGCAGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	55246376	55263953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55246572_55252464_55252639_55257516_55257584_55258966_55259065_55260624
transcript_2941.nic	chr1	+	1085	7	NIC	ENSMUSG00000026150.15	novel	1706	8	NA	NA	-16	53	combination_of_known_junctions	FALSE	canonical	3	164	junction_4	124.696520489636	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTGTCTTTGCATCA	NA	False	NA	17	True	TATAAA	-17	NA	82702594	82729502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82728240_82728326_82729305
transcript_29411.known	chr12	+	3642	16	FSM	ENSMUSG00000079108.7	ENSMUST00000218879.2	3642	16	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	270.209005524736	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATTCTTAGAAAAGTATT	NA	False	NA	NA	False	NA	NA	NA	55276952	55310621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55308911
transcript_29413.nnic	chr12	+	2809	16	Fusion	ENSMUSG00000079108.7_ENSMUSG00000112368.2	novel	3642	16	NA	NA	-61	614	multi-exon	FALSE	canonical	3	11	junction_15	308.573376831004	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCACTGTGGATTTCCTT	NA	False	NA	NA	False	AATAAA	-13	NA	55276891	55326113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55325297
transcript_2942.nic	chr1	+	1694	7	NIC	ENSMUSG00000026150.15	novel	1706	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	164	junction_4	124.696520489636	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702594	82730111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82728240_82728326_82729305
transcript_29423.known	chr12	-	4216	14	FSM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_13	62.3614203298973	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCTGGGCTTAGGATC	NA	False	NA	NA	False	TATAAA	-17	NA	55349783	55325775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
transcript_29427.known	chr12	+	2250	8	FSM	ENSMUSG00000021023.15	ENSMUST00000184766.8	2250	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.839771068151	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCGTCAAACTCACTTTT	NA	False	NA	36	True	AATAAA	-37	NA	55350027	55429298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55350118_55350400_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
transcript_2943.nic	chr1	+	1082	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	-16	53	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTGTCTTTGCATCA	NA	False	NA	17	True	TATAAA	-17	NA	82702594	82729502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
transcript_29430.known	chr12	+	3122	7	FSM	ENSMUSG00000021023.15	ENSMUST00000021411.15	3122	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	136.205726751851	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTAGTTGGTTTTGCA	NA	False	NA	19	True	AATAAA	-20	NA	55349421	55429281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
transcript_29433.nic	chr12	-	315	2	ISM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	-28	23602	-28	-5861	5prime_fragment	FALSE	canonical	3	69	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTGAGAGGGACCGCC	NA	False	NA	0	True	NA	NA	NA	55349811	55349377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_55349581_55349699
transcript_29435.known	chr12	+	1042	7	FSM	ENSMUSG00000021024.15	ENSMUST00000021412.9	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_5	124.008960249743	2026	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGGTGCATCCTGTCTTT	NA	False	NA	16	True	AATAAA	-17	NA	55445559	55465239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55445777_55454253_55454349_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55465021
transcript_2944.nic	chr1	+	1691	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702594	82730111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
transcript_29443.known	chr12	-	523	1	FSM	ENSMUSG00000059033.8	ENSMUST00000161190.2	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCTAGACACAGAGACCC	NA	False	NA	NA	False	NA	NA	NA	55443014	55442491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_55442500_55443000
transcript_29445.known	chr12	-	1578	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTCCCGCTCGTTTGC	NA	False	NA	-2	True	ATTAAA	-17	NA	55539432	55536194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
transcript_29447.known	chr12	-	3581	21	FSM	ENSMUSG00000021027.18	ENSMUST00000219529.2	3581	21	0	0	0	0	multi-exon	FALSE	canonical	1	23	junction_2	17.649645888799	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATATTTTTTCTTATTT	NA	False	NA	NA	False	ATTAAA	-12	NA	55867866	55759254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_55759572_55763746_55763924_55764877_55765095_55766368_55766494_55769558_55769727_55784995_55785158_55786116_55786355_55788218_55788349_55793900_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
transcript_29449.nic	chr12	-	2519	15	ISM	ENSMUSG00000021027.18	ENSMUST00000219542.2	3426	17	-32	17167	-32	-17167	5prime_fragment	FALSE	canonical	3	70	junction_5	10.279760181432	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCACAAAGGGAAAGGTAAGA	9915	False	NA	NA	False	NA	NA	NA	55867984	55786130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_55786355_55788218_55788349_55793900_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
transcript_29450.nic	chr12	-	2159	13	ISM	ENSMUSG00000021027.18	ENSMUST00000219542.2	3426	17	-32	24943	-32	-24943	5prime_fragment	FALSE	canonical	3	70	junction_3	9.94009836749896	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTGGTAACAATTCTATA	9915	False	NA	NA	False	NA	NA	NA	55867984	55793906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
transcript_29451.nic	chr12	-	1860	11	ISM	ENSMUSG00000021027.18	ENSMUST00000219542.2	3426	17	-32	40382	-32	-40382	5prime_fragment	FALSE	canonical	3	70	junction_1	10.6212052046837	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATGGAGAGAAAAGAGAAGA	9915	False	NA	NA	False	AATAGA	-2	NA	55867984	55809345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954_55833133_55834207_55834252_55837096_55837155_55841779_55841830_55842450_55842562_55867446
transcript_29455.known	chr12	+	2609	10	FSM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	20.0277585143997	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTAGTGTTGTGTGTTAC	NA	False	NA	2	True	AATAAA	-20	NA	55883108	55916521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735_55912863_55914946
transcript_29456.nic	chr12	+	2642	9	ISM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	22	2029	22	1724	5prime_fragment	FALSE	canonical	3	160	junction_3	21.242645786248	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGAAATTGTGTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	55883130	55914492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735
transcript_2946.nic	chr1	+	438	3	ISM	ENSMUSG00000026150.15	ENSMUST00000161572.8	586	4	-44	6174	-16	-6174	5prime_fragment	FALSE	canonical	3	455	junction_2	27.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAGTAGCACCACCAAA	NA	False	NA	NA	False	AATACA	-39	NA	82702594	82707054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_82702806_82704948_82705058_82706936
transcript_29461.known	chr12	-	1512	9	FSM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	38.7193427113633	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTCTTTTTTACTGT	NA	False	NA	NA	False	AATAAA	-33	NA	56392679	56375087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
transcript_29467.nic	chr12	-	1811	8	NIC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	9	0	intron_retention	FALSE	canonical	3	215	junction_1	41.3481978977047	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTCTTTTTTACTGT	NA	False	NA	NA	False	AATAAA	-33	NA	56392670	56375087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
transcript_29472.nnic	chr12	+	2021	11	NIC	ENSMUSG00000047022.19	novel	2117	11	NA	NA	-15	26	combination_of_known_splicesites	FALSE	canonical	3	14	junction_10	19.5642531163344	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGGGTCGAATGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	57277197	57513853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57513241
transcript_29473.known	chr12	+	2117	11	FSM	ENSMUSG00000047022.19	ENSMUST00000123498.8	2117	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	14.6659469520382	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTGGTATTTTTTAAT	NA	False	NA	NA	False	AATAAA	-31	NA	57277231	57543985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
transcript_29474.known	chr12	+	1424	10	FSM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_9	13.9602610609146	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57277231	57504018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738
transcript_29475.nic	chr12	+	1404	8	ISM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	-34	92677	-15	-2038	5prime_fragment	FALSE	canonical	3	52	junction_6	11.4196393666922	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCAGCCGTTTCTTTGTA	NA	False	NA	NA	False	AATAAA	-29	NA	57277197	57411341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912
transcript_29477.known	chr12	+	1168	5	FSM	ENSMUSG00000047022.19	ENSMUST00000148418.8	1168	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	7.69740215917033	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATTGTATGTATTTCTT	NA	False	NA	NA	False	NA	NA	NA	57277221	57372861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309
transcript_29479.known	chr12	+	1856	4	FSM	ENSMUSG00000047022.19	ENSMUST00000153755.8	1856	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	7.34846922834953	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTATGTAGTACAAAAATAA	NA	False	NA	NA	False	AATAAA	-24	NA	57277212	57355481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144
transcript_29481.known	chr12	+	1720	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAATCCATTACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	57277197	57286668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_57277398_57285148
transcript_29486.known	chr12	-	4109	20	FSM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_10	53.3728846882441	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTCAGCTATGCTGAAGA	2678	False	NA	-27	True	NA	NA	NA	59058803	59005168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
transcript_2949.known	chr1	+	2352	13	FSM	ENSMUSG00000026159.14	ENSMUST00000186302.7	2352	13	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_12	56.7364154078607	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTTTGTGTTCTTG	NA	False	NA	15	True	AATAAA	-15	NA	82817394	82873396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
transcript_29500.known	chr12	+	1588	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	0	0	0	0	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTAGTTTAATTTCAC	NA	False	NA	NA	False	TTTAAA	-6	NA	59060178	59075256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
transcript_29512.nic	chr12	+	2300	9	NIC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-2	59	intron_retention	FALSE	canonical	1	279	junction_3	170.872028138019	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGAAATGTCTGTGAA	NA	False	NA	7	True	AATATA	-18	NA	59060176	59074732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59068523_59071788_59071900_59073640_59073700_59074522
transcript_29513.nic	chr12	+	2753	9	NIC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-2	0	intron_retention	FALSE	canonical	1	279	junction_3	170.872028138019	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCATACAGATGAAATGGC	NA	False	NA	NA	False	AATAAA	-27	NA	59060176	59075185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59068523_59071788_59071900_59073640_59073700_59074522
transcript_29523.known	chr12	-	1486	7	FSM	ENSMUSG00000020993.10	ENSMUST00000217660.2	1486	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	143.962668772151	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGAAAGTTTATTTTAAT	NA	False	NA	-5	True	NA	NA	NA	59108258	59089913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59106041_59106298_59107941
transcript_29525.known	chr12	-	1255	6	FSM	ENSMUSG00000020993.10	ENSMUST00000021380.10	1255	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	16.4146276229466	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCATTAATTTAATCA	NA	False	NA	31	True	AATAGA	-14	NA	59108247	59089877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59107941
transcript_29529.known	chr12	-	665	5	FSM	ENSMUSG00000020993.10	ENSMUST00000218936.2	665	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	126.52149026944	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGTCACCTCAGTAAAG	NA	False	NA	NA	False	NA	NA	NA	59108207	59093856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_59093986_59094908_59094993_59097053_59097172_59098426_59098495_59107941
transcript_29530.known	chr12	-	785	4	FSM	ENSMUSG00000020993.10	ENSMUST00000218686.2	785	4	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_3	140.478547195727	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTTCAAATGACCAAAAT	NA	False	NA	NA	False	ATTAAA	-25	NA	59108204	59090118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59107941
transcript_29531.known	chr12	-	737	6	FSM	ENSMUSG00000020993.10	ENSMUST00000218799.2	737	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	118.145672794225	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTGACTGACCTATTC	NA	False	NA	NA	False	NA	NA	NA	59108130	59090291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097185_59098426_59098495_59107941
transcript_29532.known	chr12	+	3485	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAAATATCTTCATTTA	NA	False	NA	9	True	ATTAAA	-43	NA	59113669	59120784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
transcript_29538.nic	chr12	+	626	7	ISM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	21	3827	-17	996	5prime_fragment	FALSE	canonical	3	479	junction_6	28.2159332450459	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAGTTCAGGCTGAAGA	NA	False	NA	NA	False	AAAAAG	-23	NA	59113690	59116957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927
transcript_29540.known	chr12	+	2924	6	FSM	ENSMUSG00000020994.6	ENSMUST00000217773.2	2924	6	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_4	10.733126291999	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAGAAGGCGGAACAAGAA	NA	False	NA	NA	False	AAAAAG	-25	NA	59113707	59118322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901
transcript_29541.known	chr12	+	882	1	FSM	ENSMUSG00000066487.4	ENSMUST00000085368.4	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	59127804	59128686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_59127800_59128700
transcript_29543.known	chr12	+	2649	25	FSM	ENSMUSG00000021000.18	ENSMUST00000176322.8	2649	25	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	130.239736213219	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATGGGTAAATTATTTC	NA	False	NA	4	True	AATAAA	-18	NA	59178252	59236738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193121_59193149_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
transcript_2955.known	chr1	+	2896	13	FSM	ENSMUSG00000026159.14	ENSMUST00000063380.11	2896	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_7	129.211390106807	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTAGTAATGCCTCGTT	NA	False	NA	-88	True	AATGAA	-15	NA	82817391	82874000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860964_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
transcript_29551.known	chr12	+	4434	24	FSM	ENSMUSG00000021000.18	ENSMUST00000176464.8	4434	24	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_5	45.1017752679996	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCGAAGGCCAGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	59178071	59238369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
transcript_29558.known	chr12	+	2785	23	FSM	ENSMUSG00000021000.18	ENSMUST00000170992.9	2785	23	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_4	87.8376248945031	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTTGTTTGGTATTAA	NA	False	NA	7	True	AATAAA	-15	NA	59178238	59236959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
transcript_29570.nic	chr12	+	1329	15	ISM	ENSMUSG00000021000.18	ENSMUST00000176322.8	2649	25	-34	21007	-20	0	5prime_fragment	FALSE	canonical	3	12	junction_5	160.007796366175	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGAAAATTACCGATTAG	NA	False	NA	NA	False	NA	NA	NA	59178218	59215731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193121_59193149_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719
transcript_29571.nic	chr12	+	1289	14	ISM	ENSMUSG00000021000.18	ENSMUST00000176322.8	2649	25	-24	26951	-10	-5944	5prime_fragment	FALSE	canonical	3	12	junction_5	165.975224500312	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATGAAACTTCACAGGT	NA	False	NA	NA	False	NA	NA	NA	59178228	59209787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193121_59193149_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666
transcript_29574.nic	chr12	+	1224	13	ISM	ENSMUSG00000021000.18	ENSMUST00000170992.9	2785	23	-14	21228	-14	0	5prime_fragment	FALSE	canonical	3	90	junction_4	110.149015227353	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGAAAATTACCGATTAG	NA	False	NA	NA	False	NA	NA	NA	59178224	59215731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719
transcript_29580.known	chr12	-	3688	4	FSM	ENSMUSG00000035329.8	ENSMUST00000043204.8	3688	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0.942809041582063	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGATGAATTTTATT	NA	False	NA	-11	True	AATAAA	-15	NA	59266511	59247440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_59249466_59251096_59251783_59252766_59252878_59265645
transcript_29582.known	chr12	+	1468	5	FSM	ENSMUSG00000047227.6	ENSMUST00000058135.6	1468	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	5.11737237261468	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTGTACTTTTTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	64964679	64971365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_64964966_64967578_64968104_64969098_64969189_64970280_64970416_64970933
transcript_29583.known	chr12	-	6459	5	FSM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	2.9474565306379	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTATCATGTAATCATTA	NA	False	NA	-4	True	NA	NA	NA	65012308	64985606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_64990388_64996787_64996997_64998149_64998594_65003612_65004512_65012182
transcript_29584.known	chr12	+	6386	21	FSM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	35.8941499411812	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTGACAGGTGTCCTA	NA	False	NA	9	True	AATAAA	-17	NA	65012713	65069347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65037714_65037865_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
transcript_29586.known	chr12	+	6372	20	FSM	ENSMUSG00000035614.12	ENSMUST00000066296.9	6372	20	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_14	35.155846142648	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTGACAGGTGTCCTA	NA	False	NA	9	True	AATAAA	-17	NA	65012577	65069347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
transcript_29589.nic	chr12	+	3983	11	ISM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	-221	25620	-85	0	5prime_fragment	FALSE	canonical	2	3	junction_8	43.8912291921746	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTTCTTGATGCTAAAG	NA	False	NA	NA	False	AAGAAA	-2	NA	65012492	65043727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65037714_65037865_65039318_65039415_65042279_65042456_65043665
transcript_29591.nic	chr12	+	3833	10	ISM	ENSMUSG00000035614.12	ENSMUST00000066296.9	6372	20	-85	25620	-85	0	5prime_fragment	FALSE	canonical	3	17	junction_7	40.2117850178401	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTTCTTGATGCTAAAG	NA	False	NA	NA	False	AAGAAA	-2	NA	65012492	65043727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65039318_65039415_65042279_65042456_65043665
transcript_29593.known	chr12	+	2597	6	FSM	ENSMUSG00000035614.12	ENSMUST00000221836.2	2597	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	50.3094424536786	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAACTACTGCAGTT	NA	False	NA	NA	False	AATAAA	-34	NA	65012829	65029231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_65014803_65016999_65017030_65023475_65023626_65024942_65025078_65027356_65027654_65029219
transcript_29607.known	chr12	+	3457	15	FSM	ENSMUSG00000035597.20	ENSMUST00000220798.2	3457	15	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_9	125.885678620058	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAATTGTTGATGAATTCA	7508	False	NA	19	True	AATAAA	-16	NA	65083107	65108929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_65083243_65089234_65089582_65090005_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
transcript_29612.known	chr12	+	4069	14	FSM	ENSMUSG00000035597.20	ENSMUST00000120580.8	4069	14	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_3	84.525476709793	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCCTGTGGTCTCCTTC	7507	False	NA	8	True	AATAAA	-16	NA	65083106	65110160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_65083243_65089234_65089582_65090005_65090132_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
transcript_2965.known	chr1	+	3142	12	FSM	ENSMUSG00000026159.14	ENSMUST00000113444.8	3142	12	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_9	136.075392326071	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTAAGTTATGAATTTTG	NA	False	NA	14	True	ATTAAA	-20	NA	82817217	82874102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82871144_82871304_82872196_82872289_82872719
transcript_29657.known	chr12	-	981	7	FSM	ENSMUSG00000020949.10	ENSMUST00000221166.2	981	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3855.04114764032	1033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65120736	65109197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116720_65116827_65120588
transcript_29662.known	chr12	-	1233	6	FSM	ENSMUSG00000020949.10	ENSMUST00000221710.2	1233	6	0	0	0	0	multi-exon	FALSE	canonical	3	9942	junction_1	352.092828668804	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGCTGTCCTCAGGTCC	NA	False	NA	NA	False	CATAAA	-35	NA	65120736	65109878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
transcript_29663.known	chr12	-	600	5	FSM	ENSMUSG00000020949.10	ENSMUST00000221913.2	600	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	4410.83452279724	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTATGTAAAGTATTCCAG	NA	False	NA	-94	True	NA	NA	NA	65120695	65109289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65116724_65116827_65120588
transcript_29665.known	chr12	-	654	5	FSM	ENSMUSG00000020949.10	ENSMUST00000220983.2	654	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	4405.18495638946	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCTTGTAAACTAGAAGA	NA	False	NA	-59	True	NA	NA	NA	65120674	65109254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_65109515_65110451_65110550_65115775_65115884_65116724_65116827_65120588
transcript_29666.nic	chr12	-	631	4	ISM	ENSMUSG00000020949.10	ENSMUST00000221710.2	1233	6	-135	3535	-90	77	5prime_fragment	FALSE	canonical	3	9974	junction_2	365.855162598534	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTTAACTTTTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	65120871	65113413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_65113552_65115775_65115884_65116724_65116827_65120588
transcript_29667.nic	chr12	-	464	4	ISM	ENSMUSG00000020949.10	ENSMUST00000221710.2	1233	6	-45	3612	0	0	5prime_fragment	FALSE	canonical	3	9974	junction_2	365.855162598534	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGATGTTGTTCACTGC	NA	False	NA	NA	False	GATAAA	-17	NA	65120781	65113490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_65113552_65115775_65115884_65116724_65116827_65120588
transcript_29669.known	chr12	-	408	3	FSM	ENSMUSG00000020949.10	ENSMUST00000221706.2	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	9974	junction_1	427.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTAGGGATTGGACTTAG	NA	False	NA	NA	False	NA	NA	NA	65120740	65115729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_65115884_65116724_65116827_65120588
transcript_29671.known	chr12	+	7775	23	FSM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	33.1504521739726	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAAAAAAAATTGCTAG	9283	False	NA	NA	False	NA	NA	NA	65122379	65178832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021_65146227_65148334_65148487_65149335_65149492_65151801_65153666_65160547_65160634_65160729_65160793_65163106_65163239_65165057_65165215_65167250_65167358_65168303_65168865_65171587_65171961_65173288_65173581_65177048
transcript_29673.nic	chr12	+	5008	20	ISM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	-52	10338	-49	-56	5prime_fragment	TRUE	canonical	3	55	junction_4	32.0266509518422	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACACACGGCCAAGAAAGA	9231	False	NA	NA	False	AGTAAA	-28	NA	65122327	65168494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021_65146227_65148334_65148487_65149335_65149492_65151801_65153666_65160547_65160634_65160729_65160793_65163106_65163239_65165057_65165215_65167250_65167358_65168303
transcript_29678.nic	chr12	+	4339	15	ISM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	-52	18218	-49	-4477	5prime_fragment	FALSE	canonical	3	55	junction_4	34.0893932872657	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTAAAGTCCCCGGAGG	9231	False	NA	NA	False	AAAAAG	-4	NA	65122327	65160614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021_65146227_65148334_65148487_65149335_65149492_65151801_65153666_65160547
transcript_29681.known	chr12	+	4050	11	FSM	ENSMUSG00000055884.9	ENSMUST00000223401.2	4050	11	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	38.7949739012672	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAAAATAGATGAAGCA	9284	False	NA	NA	False	NA	NA	NA	65122380	65148229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021
transcript_29689.known	chr12	+	1682	7	FSM	ENSMUSG00000055884.9	ENSMUST00000223051.2	1682	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	45.9737243796207	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATCAGTAGTAGTTACTG	9280	False	NA	NA	False	AATAAA	-12	NA	65122376	65140858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426
transcript_2969.known	chr1	+	2078	12	FSM	ENSMUSG00000026159.14	ENSMUST00000187899.7	2078	12	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_5	134.14806178003	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATTCATTCTTGAATT	NA	False	NA	29	True	ATTAAA	-41	NA	82817394	82873242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_82817611_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82859948_82860159_82860901_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
transcript_29690.known	chr12	-	4017	14	FSM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_12	54.2140181439599	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219354	65179507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
transcript_29693.nic	chr12	-	3445	13	NIC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_12	86.8969296862029	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219408	65179507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
transcript_29708.nic	chr12	-	1624	7	ISM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	-48	20039	-24	0	5prime_fragment	FALSE	canonical	3	216	junction_5	67.8298524905435	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAGATGCAGA	NA	False	NA	NA	False	AAGAAA	-9	NA	65219402	65199546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
transcript_29712.known	chr12	-	969	6	FSM	ENSMUSG00000047534.18	ENSMUST00000221296.2	969	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	123.279195325083	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAGATGCAGA	NA	False	NA	NA	False	AAGAAA	-9	NA	65219373	65199546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
transcript_29713.nic	chr12	-	1733	6	ISM	ENSMUSG00000047534.18	ENSMUST00000222244.2	2053	7	-197	4772	-191	912	5prime_fragment	FALSE	canonical	3	216	junction_4	74.2169791894011	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAACTGTCTAAATTTTTA	NA	False	NA	NA	False	GATAAA	-18	NA	65219569	65200579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
transcript_29717.nic	chr12	-	798	3	ISM	ENSMUSG00000047534.18	ENSMUST00000222244.2	2053	7	9	9797	9	-2811	5prime_fragment	FALSE	canonical	3	216	junction_1	36	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCAGCTTCGTGCATTT	NA	False	NA	NA	False	NA	NA	NA	65219363	65205604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_65205636_65208176_65208803_65219222
transcript_29718.known	chr12	+	2228	2	FSM	ENSMUSG00000035560.6	ENSMUST00000046331.5	2228	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGATGACCTCTTTGTTTC	NA	False	NA	NA	False	AATAAA	-19	NA	65272290	65275228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_65274272_65274981
transcript_29719.known	chr12	-	1023	1	FSM	ENSMUSG00000060499.8	ENSMUST00000081908.8	1023	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	220	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTAGCTTTGGTTGTTTTG	NA	False	NA	-4	True	ATTAAA	-20	NA	66331175	66330152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_66330200_66331200
transcript_2972.nic	chr1	+	646	3	ISM	ENSMUSG00002074851.1_ENSMUSG00000026159.14	ENSMUST00000190046.7	1805	14	-284	24326	4	-9326	5prime_fragment	FALSE	canonical	3	505	junction_1	13	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGTGAGTGAATAATTGG	NA	False	NA	35	True	AAAAAG	-37	NA	82817170	82848517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_82817611_82836076_82836171_82848405
transcript_29720.known	chr12	+	556	1	FSM	ENSMUSG00000113948.2	ENSMUST00000221295.2	556	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1825	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAGCATAAAATAAAGGCA	NA	False	NA	NA	False	AAGAAA	-35	NA	67557529	67558085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_67557500_67558100
transcript_29721.known	chr12	-	390	3	FSM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	0	0	0	0	multi-exon	FALSE	canonical	3	25458	junction_2	210	5411	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	-10	True	AATAAA	-18	NA	69205960	69204495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69204596_69205434_69205535_69205770
transcript_29722.known	chr12	+	300	1	FSM	ENSMUSG00000118866.1	ENSMUST00000175032.4	300	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGACACTTAATAATATT	8842	False	NA	NA	False	NA	NA	NA	69206068	69206368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69206100_69206400
transcript_29723.known	chr12	+	1500	4	FSM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	15.6276108929747	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATGTCTCAGCAGTTA	NA	False	NA	9	True	ATTAAA	-23	NA	69215587	69225783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69215837_69218635_69218735_69221165_69221888_69225353
transcript_29725.nic	chr12	+	491	3	ISM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	-35	4510	-35	-505	5prime_fragment	FALSE	canonical	3	128	junction_2	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTGAAAAATATAAAACCAA	NA	False	NA	NA	False	ACTAAA	-20	NA	69215552	69221273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_69215837_69218635_69218735_69221165
transcript_29727.known	chr12	+	767	3	FSM	ENSMUSG00000034883.10	ENSMUST00000222520.2	767	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	59	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATATCAATGTCTCAGCA	NA	False	NA	5	True	ATTAAA	-19	NA	69215594	69225779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69215837_69218635_69218735_69225353
transcript_2973.known	chr1	-	2974	7	FSM	ENSMUSG00000038496.17	ENSMUST00000045560.15	2974	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	3.48409082672781	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTGGTTATTTCATT	NA	False	NA	NA	False	AATAAA	-13	NA	83016169	82990243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_82991711_82992423_82992566_82997052_82997246_83000054_83000863_83003946_83004102_83005733_83005864_83016090
transcript_29730.known	chr12	-	1706	19	FSM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	0	0	0	0	multi-exon	TRUE	canonical	3	369	junction_1	34.9372011570955	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274969	69248546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
transcript_2974.known	chr1	-	1550	6	FSM	ENSMUSG00000038496.17	ENSMUST00000164473.2	1550	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	2.92574776766556	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAATGGGCAGGATTT	NA	False	NA	NA	False	NA	NA	NA	83016152	82991520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_82991711_82992423_82992566_82997052_82997246_83000054_83000863_83003946_83004102_83016090
transcript_2975.known	chr1	-	2664	3	FSM	ENSMUSG00000045658.17	ENSMUST00000168574.9	2664	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTTTATTTATTTTTTT	440	False	NA	NA	False	AATAAA	-19	NA	84262366	84014016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_84016229_84136952_84137100_84262061
transcript_29750.known	chr12	-	3390	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_2	19	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTTACCTACATTCTC	NA	False	NA	-8	True	AATAAA	-16	NA	69245203	69235860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69237169_69239581_69239726_69243265
transcript_29756.known	chr12	-	757	2	FSM	ENSMUSG00000049751.7	ENSMUST00000110620.2	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTGATTCTCAGTA	NA	False	NA	2	True	AATAAA	-24	NA	69230760	69229504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69229940_69230438
transcript_29757.known	chr12	-	1276	1	FSM	ENSMUSG00000049751.7	ENSMUST00000110619.2	1276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCTTGTGTTTTGATT	NA	False	NA	-5	True	AATAAA	-17	NA	69230787	69229511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69229500_69230800
transcript_29758.known	chr12	+	2614	1	FSM	ENSMUSG00000043998.11	ENSMUST00000060579.10	2614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCATCACATCTTAATAT	2294	False	NA	NA	False	AATAAA	-23	NA	69230930	69233544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69230900_69233500
transcript_29759.known	chr12	-	526	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	5332	junction_1	0	1614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCAAGCCTTGTGTTTTG	NA	False	NA	-8	True	AATAAA	-14	NA	69230857	69229514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69229940_69230756
transcript_29760.known	chr12	+	2620	13	FSM	ENSMUSG00000051890.14	ENSMUST00000063445.13	2620	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.37474278855276	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCAGTGTGAATTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	69288605	69331406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69288788_69297526_69297598_69298144_69298263_69298701_69298821_69300465_69300545_69302948_69303033_69304796_69304881_69305342_69305402_69306274_69306388_69309922_69309996_69315015_69315101_69316599_69316653_69329906
transcript_29762.known	chr12	-	4732	33	FSM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	0	0	0	0	multi-exon	TRUE	canonical	3	259	junction_6	33.0300526036517	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGCCAACA	NA	False	NA	NA	False	NA	NA	NA	69403939	69357295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_29766.nic	chr12	-	2680	26	ISM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	-38	7505	-38	4582	5prime_fragment	FALSE	canonical	3	272	junction_2	24.8128998708333	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGAAATCAACTTGTAAA	NA	False	NA	NA	False	AATGAA	-14	NA	69403977	69364800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_29769.nic	chr12	-	2586	26	ISM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	-38	7599	-38	4488	5prime_fragment	FALSE	canonical	3	272	junction_2	24.8128998708333	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGACAAAGAGAGAGAAAGTG	NA	False	NA	NA	False	AAAAAG	-42	NA	69403977	69364894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_2977.known	chr1	-	450	3	FSM	ENSMUSG00000045658.17	ENSMUST00000176720.2	450	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	16	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTGGCAGATTGCAGTT	662	False	NA	NA	False	NA	NA	NA	84262144	84058299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_84058520_84136952_84137100_84262061
transcript_29772.nic	chr12	-	2520	25	ISM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	-38	9857	-38	2230	5prime_fragment	FALSE	canonical	3	272	junction_1	25.3108452819911	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGGTAAATGTGTTACA	NA	False	NA	-13	True	AGTAAA	-33	NA	69403977	69367152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_2978.known	chr1	-	1431	1	FSM	ENSMUSG00000045658.17	ENSMUST00000187992.2	1431	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	462	False	NA	NA	False	NA	NA	NA	84262344	84260913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_84260900_84262300
transcript_29780.nnic	chr12	-	1515	15	NNC	ENSMUSG00000020982.10	novel	1340	14	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	131.518389340403	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGCAGCTGCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	69403977	69387751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_69387831_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69397630_69397741_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_29782.nnic	chr12	-	1511	15	NNC	ENSMUSG00000020982.10	novel	2370	20	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	114.395750598971	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGGAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	69403977	69387775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69397630_69397741_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_29783.nnic	chr12	+	2868	14	NNC	ENSMUSG00000020978.11	novel	1905	13	NA	NA	0	1097	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	164.575444471759	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTACAGATGTGTATCATT	NA	False	NA	NA	False	AATAAA	-15	NA	69343495	69358558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356760_69356814_69356926_69357984_69358117
transcript_29786.known	chr12	-	1340	14	FSM	ENSMUSG00000020982.10	ENSMUST00000222763.2	1340	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	83.598505125221	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGCAGCTGCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	69403912	69387751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69387831_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_29787.nic	chr12	-	1401	14	ISM	ENSMUSG00000020982.10	ENSMUST00000220674.2	2370	20	-61	16511	-38	0	5prime_fragment	FALSE	canonical	3	286	junction_8	27.062496156579	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGGAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	69403977	69387775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_29788.nic	chr12	-	1345	14	ISM	ENSMUSG00000020982.10	ENSMUST00000220674.2	2370	20	-61	16567	-38	-56	5prime_fragment	FALSE	canonical	3	286	junction_8	27.062496156579	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGAAGATGGTGATGG	NA	False	NA	NA	False	AATAGA	-19	NA	69403977	69387831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_2979.known	chr1	-	2521	2	FSM	ENSMUSG00000045658.17	ENSMUST00000177458.2	2521	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAAACA	474	False	NA	NA	False	NA	NA	NA	84262332	84134849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_84137100_84262061
transcript_29790.known	chr12	+	1905	13	FSM	ENSMUSG00000020978.11	ENSMUST00000021362.5	1905	13	0	0	0	0	multi-exon	TRUE	canonical	3	493	junction_10	56.6727937863977	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGACTTTTTATCCCACG	NA	False	NA	NA	False	NA	NA	NA	69343495	69357461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356760_69356814_69356926
transcript_29798.nic	chr12	-	1036	11	ISM	ENSMUSG00000020982.10	ENSMUST00000222763.2	1340	14	-65	3154	-38	-3130	5prime_fragment	FALSE	canonical	3	286	junction_5	27.7757088118377	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGTATAGTATCACTTAAA	NA	False	NA	NA	False	NA	NA	NA	69403977	69390905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_298.known	chr1	+	2049	14	FSM	ENSMUSG00000033793.13	ENSMUST00000044369.13	2049	14	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	59.3277926628703	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTGATGATGAGAAGT	NA	False	NA	98	True	AATAAA	-37	NA	5153302	5232752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
transcript_2980.nic	chr1	-	2992	13	NIC	ENSMUSG00000036766.13	novel	3632	13	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_12	4.19242040936842	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTGTCTCATTCTTTAA	NA	False	NA	1	True	AATAAA	-19	NA	84618274	84347559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_84348597_84361505_84361753_84373335_84373468_84383659_84383774_84396369_84396493_84423115_84423341_84454065_84454180_84472451_84472606_84512572_84512719_84558376_84558544_84560724_84560820_84563033_84563343_84618145
transcript_29802.known	chr12	-	882	6	FSM	ENSMUSG00000020982.10	ENSMUST00000220484.2	882	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	137.842518839435	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTTTAATCTTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	69403923	69398762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69399149_69400567_69400667_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_29805.known	chr12	+	2490	9	FSM	ENSMUSG00000020978.11	ENSMUST00000138585.8	2490	9	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_4	32.5228285209021	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	69343528	69355440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963
transcript_29806.known	chr12	-	300	1	FSM	ENSMUSG00000118841.1	ENSMUST00000174924.4	300	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTCTCTATCCCTCACT	NA	False	NA	NA	False	NA	NA	NA	69408255	69407955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69408000_69408300
transcript_29807.known	chr12	+	1534	2	FSM	ENSMUSG00000044147.9	ENSMUST00000050063.9	1534	2	0	0	0	0	multi-exon	FALSE	canonical	3	1327	junction_1	0	833	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAACTGCCGTTTGTCTTT	NA	False	NA	30	True	AGTAAA	-19	NA	69418923	69420557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69418998_69419097
transcript_2981.known	chr1	-	3632	13	FSM	ENSMUSG00000036766.13	ENSMUST00000049126.13	3632	13	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_12	3.60169713082905	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTGTCTCATTCTTTAA	NA	False	NA	1	True	AATAAA	-19	NA	84673942	84347559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_84348597_84361505_84361753_84373335_84373468_84383659_84383774_84396369_84396493_84423115_84423341_84454065_84454180_84472451_84472606_84512572_84512719_84558376_84558544_84560724_84560820_84563033_84563343_84673173
transcript_29810.known	chr12	-	1018	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238220.2	1018	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	78.351515620312	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAAACGTTGACAATC	NA	False	NA	-59	True	NA	NA	NA	69629791	69624455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69624715_69626607_69626785_69627891_69628012_69629049_69629120_69629304_69629400_69629494
transcript_29811.nic	chr12	-	1149	6	NIC	ENSMUSG00000049882.11	novel	1109	6	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	61.6071424430642	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629852	69624401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_69624715_69626607_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
transcript_29812.known	chr12	-	1109	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	23.3837550449024	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629884	69624401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
transcript_29813.known	chr12	-	875	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238784.2	875	6	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	48.4710222710435	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGAAGACTGCCTCACAG	NA	False	NA	NA	False	NA	NA	NA	69629884	69624624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629494
transcript_29814.nic	chr12	-	1974	5	ISM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	32	1068	32	-845	5prime_fragment	FALSE	canonical	3	142	junction_3	19.0656759649376	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGTCTCGGTTTTTAG	NA	False	NA	NA	False	CATAAA	-15	NA	69629852	69625469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
transcript_29817.known	chr12	-	3340	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771647	69737206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
transcript_29823.nnic	chr12	-	3143	8	NIC	ENSMUSG00000020988.10	novel	3340	10	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	181.049998731887	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771648	69737206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69759395_69759528_69768085_69768238_69768851_69768968_69771427
transcript_29826.nic	chr12	-	638	3	ISM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	-14	30743	-14	-8455	5prime_fragment	FALSE	canonical	3	564	junction_2	31.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATTTGTGATTTCATGT	NA	False	NA	NA	False	AATATA	-20	NA	69771661	69767949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_69768238_69768851_69768968_69771427
transcript_29829.known	chr12	+	1599	6	FSM	ENSMUSG00000054894.7	ENSMUST00000220916.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	68.5787138987018	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771723	69791434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69771789_69772228_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_29837.known	chr12	+	1485	5	FSM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	45.2513811943901	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGGCTAGTCTTTAC	NA	False	NA	2	True	AATAAA	-14	NA	69771735	69791432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69771789_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_29841.nic	chr12	+	2035	5	NIC	ENSMUSG00000054894.7	novel	1485	5	NA	NA	2	0	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGGCTAGTCTTTAC	NA	False	NA	2	True	AATAAA	-14	NA	69771725	69791432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_29846.known	chr12	-	4498	32	FSM	ENSMUSG00000034761.16	ENSMUST00000110570.8	4498	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	34.9651231015531	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTGTTCTTTAAAGTGC	NA	False	NA	NA	False	AATAAA	-24	NA	69939974	69850523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69852126_69853971_69854028_69855985_69856057_69858047_69858141_69859909_69859979_69862528_69862707_69863063_69863168_69864795_69864855_69865157_69865273_69867713_69867717_69869576_69869638_69870195_69870276_69871353_69871439_69872515_69872558_69873064_69873163_69874135_69874293_69874797_69874841_69877202_69877271_69878325_69878385_69884768_69884848_69888693_69888811_69889661_69889744_69891129_69891193_69892454_69892587_69896320_69896394_69897599_69897643_69897727_69897776_69899472_69899529_69903054_69903120_69903546_69903638_69921050_69921109_69939426
transcript_29852.known	chr12	-	4452	31	FSM	ENSMUSG00000034761.16	ENSMUST00000049239.8	4452	31	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	26.8295856596159	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATAAAGTATTTGTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	69939937	69850532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_69852126_69853971_69854028_69855985_69856057_69858047_69858141_69859909_69859979_69862528_69862707_69863063_69863168_69864795_69864855_69865157_69865276_69869576_69869638_69870195_69870276_69871353_69871439_69872515_69872558_69873064_69873163_69874135_69874293_69874797_69874841_69877202_69877271_69878325_69878385_69884768_69884848_69888693_69888811_69889661_69889744_69891129_69891193_69892454_69892587_69896320_69896394_69897599_69897643_69897727_69897776_69899472_69899529_69903054_69903120_69903546_69903638_69921050_69921109_69939426
transcript_29860.known	chr12	+	5150	15	FSM	ENSMUSG00000021066.10	ENSMUST00000021466.10	5150	15	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_5	4.65766868197174	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATATTTTTATTATACAT	8974	False	NA	NA	False	AATAAA	-16	NA	69939878	70013191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_69940119_69954578_69954767_69972715_69972964_69978311_69978447_69978990_69979096_69981643_69981695_69983848_69983906_69992986_69993080_69994220_69994360_70000213_70000342_70001229_70001287_70002089_70002162_70005814_70006247_70007321_70007337_70010001
transcript_29863.known	chr12	-	2524	5	FSM	ENSMUSG00000021067.9	ENSMUST00000021467.8	2524	5	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_4	6.57171971404746	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGGTCCTTGAATGCA	NA	False	NA	-14	True	ATTAAA	-17	NA	70033776	70011785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_70013122_70015843_70015988_70022741_70023013_70030982_70031427_70033447
transcript_29877.known	chr12	-	4723	29	FSM	ENSMUSG00000021068.18	ENSMUST00000220689.2	4723	29	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	11.1022037709379	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACTGTCTTCTTTGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	70158403	70065513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_70066037_70067607_70067806_70069054_70069116_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424_70149629_70158209
transcript_29879.known	chr12	-	2825	20	FSM	ENSMUSG00000021069.18	ENSMUST00000071250.13	2825	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_17	3.93154724147013	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCTTGGATTCCTTTCC	6200	False	NA	0	True	AATAAA	-28	NA	70274457	70237584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_70237931_70240512_70240580_70241006_70241142_70242277_70242486_70243744_70243887_70243991_70244051_70244171_70244320_70244433_70244536_70245203_70245319_70246415_70246580_70246905_70247053_70248042_70248136_70248618_70248763_70253135_70253219_70254444_70254557_70257800_70257933_70263336_70263441_70266362_70266442_70269598_70269701_70274114
transcript_29880.known	chr12	+	2795	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTGGTGTTCTCATAAG	NA	False	NA	13	True	ATTAAA	-16	NA	70499868	70514814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
transcript_2989.known	chr1	-	9632	41	FSM	ENSMUSG00000026219.15	ENSMUST00000027421.13	9632	41	0	0	0	0	multi-exon	TRUE	canonical	3	439	junction_40	206.047323144466	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTACTTTATGTACA	7894	False	NA	-8	True	AATAAA	-22	NA	84817025	84698909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84816949
transcript_29890.nic	chr12	+	3712	14	NIC	ENSMUSG00000048285.10	novel	4662	14	NA	NA	-97	-1023	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	34.6862522431374	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGGAAGAAATAGATGTA	690	False	NA	NA	False	AAGAAA	-32	NA	70872190	70947985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924014_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
transcript_29892.nic	chr12	+	4735	14	NIC	ENSMUSG00000048285.10	novel	4662	14	NA	NA	-97	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	34.6862522431374	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTCTTGTTATTATAC	690	False	NA	NA	False	AATAAA	-21	NA	70872190	70949008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924014_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
transcript_29893.known	chr12	+	4662	14	FSM	ENSMUSG00000048285.10	ENSMUST00000057859.9	4662	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	41.9310507589719	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTCTTGTTATTATAC	787	False	NA	NA	False	AATAAA	-21	NA	70872287	70949008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924038_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
transcript_29904.known	chr12	+	4022	13	FSM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_4	23.8006769278149	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGCTCTGCAGCCTT	9645	False	NA	NA	False	AATAAA	-21	NA	70984630	71011492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
transcript_29915.known	chr12	+	615	5	FSM	ENSMUSG00000021076.7	ENSMUST00000222291.2	615	5	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_4	20.5836707124847	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGAGAGATTTAAGCTT	9731	False	NA	NA	False	NA	NA	NA	70984716	70994486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225
transcript_29918.known	chr12	-	1063	3	FSM	ENSMUSG00000085622.10	ENSMUST00000136690.3	1063	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTTCATAGATTCCATT	NA	False	NA	NA	False	AATAAA	-26	NA	71062606	71056568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_71057254_71061229_71061282_71062280
transcript_29919.known	chr12	-	1790	1	FSM	ENSMUSG00000085622.10	ENSMUST00000222159.2	1790	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	71062369	71060579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_71060600_71062400
transcript_29920.known	chr12	+	875	11	FSM	ENSMUSG00000060073.10	ENSMUST00000071704.4	875	11	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_2	1129.97747322679	1393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGATTTTCATTAAATTTTG	4814	False	NA	-25	True	NA	NA	NA	71021488	71041249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71021542_71025506_71025590_71030097_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_29921.known	chr12	+	1394	11	FSM	ENSMUSG00000060073.10	ENSMUST00000162626.8	1394	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1218.25789141708	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4770	False	NA	NA	False	NA	NA	NA	71021444	71041695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71021542_71025506_71025614_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_29922.known	chr12	+	1027	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160683.8	1027	10	0	0	0	0	multi-exon	FALSE	canonical	3	3391	junction_7	435.06460425613	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTGTTGGGTAATTGA	4770	False	NA	1	True	ATTAAA	-12	NA	71021444	71041275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_29923.known	chr12	+	562	7	FSM	ENSMUSG00000060073.10	ENSMUST00000162851.8	562	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	1480.68865359632	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4788	False	NA	4	True	ATTAAA	-15	NA	71021462	71041278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71021542_71025506_71025590_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_29925.nic	chr12	+	2167	18	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	-2	26706	-2	-3519	5prime_fragment	FALSE	canonical	3	75	junction_5	8.6192028308566	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAGGTATGTCCATACAT	3379	False	NA	NA	False	AAGAAA	-16	NA	71062761	71118660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852_71114113_71116607_71116806_71118581
transcript_29928.nic	chr12	+	1868	16	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	-57	31331	-57	0	5prime_fragment	FALSE	canonical	3	75	junction_5	8.70146858613852	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAGAGAAGAAGATTAA	3324	False	NA	NA	False	NA	NA	NA	71062706	71114035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852
transcript_29930.nic	chr12	+	1547	15	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	-57	35406	-57	-4075	5prime_fragment	FALSE	canonical	3	75	junction_5	9.00141712199149	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTTGAAGACTCAATGGA	3324	False	NA	NA	False	AGTAAA	-14	NA	71062706	71109960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866
transcript_29935.nic	chr12	+	684	8	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	4	58739	4	-7486	5prime_fragment	FALSE	canonical	3	75	junction_5	10.2777747134885	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGAAAGCAGCGAAG	3385	False	NA	NA	False	NA	NA	NA	71062767	71086627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612
transcript_29938.known	chr12	-	990	6	FSM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	130.329735670721	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTTGTCTTTACTGTA	NA	False	NA	-19	True	AATAAA	-12	NA	71183422	71169947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179417_71183328
transcript_29939.nnic	chr12	-	989	6	NNC	ENSMUSG00000021079.17	novel	990	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	124.393890525218	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183458	71169946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71180673_71180772_71183328
transcript_29940.known	chr12	-	718	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221559.2	718	5	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_4	64.161417534216	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATTGCAAAAATAAACCAC	NA	False	NA	-53	True	NA	NA	NA	71183408	71170069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71183328
transcript_29941.known	chr12	+	584	4	FSM	ENSMUSG00000021078.6	ENSMUST00000221962.2	584	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAATGCCCACTGCCGT	NA	False	NA	NA	False	AAAACA	-21	NA	71158243	71169901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71158524_71164299_71164382_71168637_71168781_71169822
transcript_29942.known	chr12	-	794	4	FSM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	97.112763779479	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71183328
transcript_29943.known	chr12	-	1098	1	FSM	ENSMUSG00000021079.17	ENSMUST00000223544.2	1098	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTTGTCTGTTCATCCC	NA	False	NA	NA	False	NA	NA	NA	71183409	71182311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_71182300_71183400
transcript_29944.known	chr12	-	734	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221892.2	734	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	110.141670134423	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGAGTATCATTGAGCA	NA	False	NA	-34	True	AGTAAA	-1	NA	71183401	71169962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_71170377_71172235_71172332_71173106_71173172_71178774_71178861_71183328
transcript_29945.known	chr12	-	2564	3	FSM	ENSMUSG00000021079.17	ENSMUST00000221797.2	2564	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	111	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTGAGCAGTTGTCTTT	NA	False	NA	-25	True	AATAAA	-6	NA	71183449	71169953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_71172332_71173106_71173172_71183328
transcript_29947.known	chr12	+	5763	30	FSM	ENSMUSG00000034601.18	ENSMUST00000149564.8	5763	30	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_27	23.3199327353747	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGCTGTTTCTTAGAAG	NA	False	NA	22	True	AATAAA	-20	NA	71183621	71290077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71262815_71262971_71265964_71266074_71289717
transcript_29948.known	chr12	+	4507	28	FSM	ENSMUSG00000034601.18	ENSMUST00000045907.16	4507	28	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_27	19.0025628189986	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGCTGTTTCTTAGAAG	NA	False	NA	22	True	AATAAA	-20	NA	71184613	71290077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71289717
transcript_29960.known	chr12	+	2448	4	FSM	ENSMUSG00000044548.12	ENSMUST00000150639.2	2448	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	8.28653526310404	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTGATGTAGCGAGTGT	1313	False	NA	NA	False	NA	NA	NA	71356757	71365668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71357082_71359459_71359593_71360558_71360715_71363833
transcript_29961.known	chr12	+	3650	4	FSM	ENSMUSG00000044548.12	ENSMUST00000061273.12	3650	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	6.97614984548545	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGTGTTATTTTTGAGA	1213	False	NA	NA	False	TATAAA	-36	NA	71356657	71366881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71357082_71359459_71359593_71360558_71360715_71363944
transcript_29966.known	chr12	+	5835	26	FSM	ENSMUSG00000034574.11	ENSMUST00000223272.2	5835	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	43.1749927620144	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTTTTCTATGCATTA	1803	False	NA	22	True	AATAAA	-22	NA	71877851	72039107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71877971_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72005520_72005548_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
transcript_29971.known	chr12	+	5879	26	FSM	ENSMUSG00000034574.11	ENSMUST00000085299.4	5879	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	44.1909674028528	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGATCTGTTTTCTAT	1888	False	NA	16	True	AATAAA	-16	NA	71877936	72039101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_71878106_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72005520_72005548_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
transcript_29976.nic	chr12	+	3130	25	ISM	ENSMUSG00000034574.11	ENSMUST00000223272.2	5835	26	-8	3335	-8	-3327	5prime_fragment	FALSE	canonical	0	0	junction_15	44.0078118065418	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGAACATGAGAAAAAGGA	1795	False	NA	20	True	NA	NA	NA	71877843	72035772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_71877971_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72005520_72005548_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659
transcript_29978.nic	chr12	+	3275	25	ISM	ENSMUSG00000034574.11	ENSMUST00000085299.4	5879	26	-103	3329	-18	-3327	5prime_fragment	FALSE	canonical	0	0	junction_15	45.0360773590339	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGAACATGAGAAAAAGGA	1785	False	NA	20	True	NA	NA	NA	71877833	72035772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_71878106_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72005520_72005548_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659
transcript_29982.nic	chr12	+	2105	14	ISM	ENSMUSG00000034574.11	ENSMUST00000221971.2	3149	15	-88	1451	-18	-292	5prime_fragment	FALSE	canonical	3	73	junction_1	24.50310933053	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGAATATTCCCCAGC	1785	False	NA	NA	False	NA	NA	NA	71877833	71998842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_71878106_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606
transcript_29987.known	chr12	-	3150	1	FSM	ENSMUSG00000043398.6	ENSMUST00000050649.6	3150	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAGATGTTTTGTTTTGT	NA	False	NA	-5	True	AATACA	-19	NA	72117899	72114749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_72114700_72117900
transcript_29989.known	chr12	-	1831	5	FSM	ENSMUSG00000019718.9	ENSMUST00000019862.3	1831	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	3.20156211871642	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAAGGAGTCAACTTCT	NA	False	NA	NA	False	CATAAA	-14	NA	72132213	72120201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_72120811_72123917_72124056_72124137_72124261_72126260_72126431_72131422
transcript_29991.nnic	chr12	+	1258	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.071061071468	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCCCGAAAAGTATT	NA	False	NA	NA	False	TATAAA	-27	NA	72132621	72147635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_72132682_72132724_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
transcript_29993.known	chr12	+	1874	7	FSM	ENSMUSG00000005078.17	ENSMUST00000117449.8	1874	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	199.890525593942	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	14	True	AATAAA	-20	NA	72132630	72148235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
transcript_29998.known	chr12	-	3629	9	FSM	ENSMUSG00000021087.19	ENSMUST00000078505.14	3629	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	26.5941722939444	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTCTCTCTGTCTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	72455828	72258525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105_72270314_72350430_72351193_72354929_72355704_72455084
transcript_3.known	ERCC-00004	+	507	1	FSM	ERCC-00004A	DQ516752	507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3977	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	GATAAA	-39	NA	0	507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00004_+_0_500
transcript_30.known	ERCC-00079	+	628	1	FSM	ERCC-00079A	DQ883652	628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00079_+_0_600
transcript_30000.known	chr12	-	1008	7	FSM	ENSMUSG00000021087.19	ENSMUST00000137990.2	1008	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	4.27200187265877	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	ACTAAA	-42	NA	72283498	72259062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105_72270314_72283302
transcript_30003.known	chr12	+	4300	11	FSM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	24.633513756669	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTCTTTGTGTTTAGA	NA	False	NA	NA	False	AATAAA	-16	NA	72583156	72626893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_72583314_72588148_72588892_72602210_72602391_72602617_72603133_72603356_72603458_72603574_72603695_72613670_72614035_72616491_72616596_72620263_72621277_72622127_72622315_72626077
transcript_3001.nnic	chr1	-	3914	23	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	436	-2326	at_least_one_novel_splicesite	FALSE	canonical	3	176	junction_20	169.330481554477	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAGGTAAAGTGTGGCTG	7368	False	NA	NA	False	NA	NA	NA	84817551	84729265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771306_84771392_84772049_84792543_84792691_84816949
transcript_30012.nic	chr12	+	733	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-89	38258	-89	-38258	5prime_fragment	FALSE	canonical	3	96	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGCTGGGCTAGTGTGT	NA	False	NA	15	True	AATACA	-14	NA	72583067	72588635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_72583314_72588148
transcript_30013.nic	chr12	+	1103	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-89	37888	-89	-37888	5prime_fragment	FALSE	canonical	3	96	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGGGAGAGTTAGGTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	72583067	72589005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_72583314_72588148
transcript_30014.known	chr12	-	1385	7	FSM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	5.61990510002912	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACTGCAGACTTAGA	NA	False	NA	43	True	AATAAA	-16	NA	72711683	72697126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706117_72706271_72711402
transcript_30016.known	chr12	-	2230	1	FSM	ENSMUSG00000021094.11	ENSMUST00000221674.2	2230	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAGAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	72711554	72709324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_72709300_72711600
transcript_30027.known	chr12	+	7668	6	FSM	ENSMUSG00000021096.12	ENSMUST00000021514.10	7668	6	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_3	38.6336640768126	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGTGTGCTTATGATT	NA	False	NA	3	True	AATAAA	-14	NA	72807984	72846593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_72808406_72830456_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
transcript_30033.known	chr12	+	3900	3	FSM	ENSMUSG00000021096.12	ENSMUST00000223410.2	3900	3	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_1	26.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCACTAGAACCATGTAG	NA	False	NA	-63	True	NA	NA	NA	72808088	72836174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_72808406_72830456_72831311_72833445
transcript_30050.known	chr12	-	3316	2	FSM	ENSMUSG00000051367.9	ENSMUST00000050029.8	3316	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGTATTGTTTTTGACC	8595	False	NA	NA	False	AATATA	-14	NA	73093953	73088600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_73090604_73092640
transcript_30052.nic	chr12	-	6241	4	NIC	ENSMUSG00000034460.10	novel	6402	3	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	12.2836838484589	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGTGTTGAAGAAAGATT	NA	False	NA	-1	True	AATAAA	-18	NA	73160244	73146382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_73151013_73155434_73156124_73159116_73159932_73160137
transcript_30055.known	chr12	-	6402	3	FSM	ENSMUSG00000034460.10	ENSMUST00000043208.8	6402	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	15	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGTGTTGAAGAAAGATT	NA	False	NA	-1	True	AATAAA	-18	NA	73160199	73146382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_73151013_73155434_73156124_73159116
transcript_30058.known	chr12	-	6817	3	FSM	ENSMUSG00000034460.10	ENSMUST00000175693.3	6817	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	8.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGATTCACTCCACATCCC	NA	False	NA	NA	False	NA	NA	NA	73160230	73150214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_73156124_73159116_73159932_73160137
transcript_30061.known	chr12	+	2505	8	FSM	ENSMUSG00000021103.13	ENSMUST00000021523.7	2505	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	110.46488037344	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGACTTAGAAATCTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	73170490	73320762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
transcript_30065.nic	chr12	+	502	4	ISM	ENSMUSG00000021103.13	ENSMUST00000187549.7	3688	7	-17	54296	-17	-54296	5prime_fragment	FALSE	canonical	3	229	junction_3	39.4208066888541	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGAAATATATCAAAAAGAA	NA	False	NA	NA	False	AAAAAG	-5	NA	73170473	73226026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978
transcript_30067.nic	chr12	+	369	2	ISM	ENSMUSG00000021103.13	ENSMUST00000187549.7	3688	7	-17	65407	-17	-65407	5prime_fragment	FALSE	canonical	3	322	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTAAAGATGTAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	73170473	73214915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_73170701_73214773
transcript_30072.known	chr12	-	2066	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	19.266226926931	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTAATTCAAGGTATTT	NA	False	NA	-6	True	AATAAA	-21	NA	73333483	73326784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
transcript_3009.nic	chr1	-	3709	22	ISM	ENSMUSG00000026219.15	ENSMUST00000027421.13	9632	41	-234	30356	-227	-2326	5prime_fragment	FALSE	canonical	3	439	junction_21	108.743034807052	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAGGTAAAGTGTGGCTG	7660	False	NA	NA	False	NA	NA	NA	84817259	84729265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84816949
transcript_30091.known	chr12	+	3032	16	FSM	ENSMUSG00000044712.16	ENSMUST00000140523.8	3032	16	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	3.76769897358528	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGCTGGTTTTTTTTTA	NA	False	NA	8	True	NA	NA	NA	73333552	73400823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_73333807_73335166_73335298_73338933_73339008_73356918_73356972_73365750_73365791_73376753_73376833_73383795_73383879_73384283_73384343_73388181_73388248_73388480_73388535_73390442_73390523_73391566_73391668_73397287_73397413_73398524_73398670_73398852_73398948_73399230
transcript_30098.known	chr12	-	2991	1	FSM	ENSMUSG00000034435.7	ENSMUST00000042975.7	2991	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACATTACTTAGTTCTTT	NA	False	NA	NA	False	AATAAA	-24	NA	73593166	73590175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_73590200_73593200
transcript_30105.known	chr12	+	4724	15	FSM	ENSMUSG00000021109.14	ENSMUST00000021530.8	4724	15	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_10	63.740545517411	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCATATCTTTCTAGTTC	8358	False	NA	11	True	AATAAA	-22	NA	73954677	73994304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988461_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
transcript_30108.nic	chr12	+	4087	15	NIC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	-45	-640	combination_of_known_junctions	FALSE	canonical	3	216	junction_10	79.3247008394315	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCTGGGTCAGCGCTTA	8313	False	NA	18	True	AATAAA	-18	NA	73954632	73993664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988503_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
transcript_30109.nic	chr12	+	4350	15	NIC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	-45	-377	combination_of_known_junctions	FALSE	canonical	3	216	junction_10	79.3247008394315	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTATTTGCAGTATGAAT	8313	False	NA	NA	False	ATTAAA	-18	NA	73954632	73993927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988503_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
transcript_30110.nic	chr12	+	4727	15	NIC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	216	junction_10	79.3247008394315	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCATATCTTTCTAGTTC	8313	False	NA	11	True	AATAAA	-22	NA	73954632	73994304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988503_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
transcript_3012.nnic	chr1	-	3518	22	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9525	-2326	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_21	170.242763838748	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAGGTAAAGTGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	84827762	84729265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84827643
transcript_30120.nic	chr12	+	1757	10	ISM	ENSMUSG00000021109.14	ENSMUST00000021530.8	4724	15	-45	7106	-45	543	5prime_fragment	FALSE	canonical	3	317	junction_1	58.9659872665674	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATATAAACCTGGCAAT	8313	False	NA	NA	False	AATGAA	-4	NA	73954632	73987198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121
transcript_30126.known	chr12	+	6275	10	FSM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	11.7473401244707	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTTATTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	74011299	74035740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
transcript_30138.known	chr12	+	3476	8	FSM	ENSMUSG00000044912.12	ENSMUST00000110451.4	3476	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.494871659305393	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAATGAACATGTGAAATC	NA	False	NA	NA	False	AATAAA	-22	NA	74044534	74314685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_74044638_74176145_74176326_74208829_74209651_74269355_74269569_74275988_74276243_74281582_74282024_74284954_74285145_74313411
transcript_30142.nnic	chr12	-	3134	15	NNC	ENSMUSG00000021051.11	novel	4810	14	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	53.7356055713756	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATATCAAAGGTGCATC	NA	False	NA	-16	True	AATAAA	-14	NA	75643035	75499272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640107_75642408_75642794_75642912
transcript_30144.known	chr12	-	4810	14	FSM	ENSMUSG00000021051.11	ENSMUST00000021447.9	4810	14	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_9	26.0225209699817	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACTGGATGCAGGGATA	NA	False	NA	NA	False	AATAAA	-33	NA	75642974	75497654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640107_75642408
transcript_30146.known	chr12	-	3135	13	FSM	ENSMUSG00000021051.11	ENSMUST00000220035.2	3135	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	57.382428107876	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATATCAAAGGTGCATC	NA	False	NA	-16	True	AATAAA	-14	NA	75643019	75499272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75562375_75562573_75639942_75640107_75642408
transcript_30148.nic	chr12	-	1972	13	ISM	ENSMUSG00000021051.11	ENSMUST00000021447.9	4810	14	-95	8807	-50	0	5prime_fragment	FALSE	canonical	3	142	junction_8	26.6253586308658	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTTTTTAAAGCTCTTT	NA	False	NA	-1	True	NA	NA	NA	75643069	75506461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640107_75642408
transcript_30157.known	chr12	-	1382	3	FSM	ENSMUSG00000021051.11	ENSMUST00000218930.2	1382	3	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_2	10	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTTCTCTTTGTAATTT	NA	False	NA	NA	False	NA	NA	NA	75643002	75561948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_75562573_75639942_75640107_75642408
transcript_30159.nnic	chr12	-	2413	3	NNC	ENSMUSG00000045690.9	novel	2381	3	NA	NA	-115	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGGTATCTTGTCTTAT	6295	False	NA	0	True	AATAAA	-19	NA	75716426	75677367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_75677656_75678338_75680283_75716245
transcript_30160.nnic	chr12	-	2295	3	NNC	ENSMUSG00000045690.9	novel	2381	3	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGGTATCTTGTCTTAT	6405	False	NA	0	True	AATAAA	-19	NA	75716316	75677367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_75677670_75678360_75680283_75716245
transcript_30161.known	chr12	-	2979	2	FSM	ENSMUSG00000045690.9	ENSMUST00000062370.9	2979	2	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGGGTATCTTGTCTT	6410	False	NA	-2	True	AATAAA	-17	NA	75716311	75677369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_75680283_75716245
transcript_30163.known	chr12	-	348	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	516	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGCTCCCCTGCAAAT	NA	False	NA	-80	True	NA	NA	NA	75678092	75677744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_75677700_75678100
transcript_30164.known	chr12	-	3323	3	FSM	ENSMUSG00000021054.7	ENSMUST00000021450.6	3323	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	0.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTGTTCACATGTCTG	NA	False	NA	NA	False	AATAAA	-38	NA	75782503	75761022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_75763439_75769425_75769516_75781686
transcript_30165.known	chr12	-	3200	2	FSM	ENSMUSG00000021054.7	ENSMUST00000220285.2	3200	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAGAGAAAGAGAG	NA	False	NA	NA	False	TTTAAA	-11	NA	75782470	75767099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_75769516_75781686
transcript_30170.nic	chr12	+	3118	23	ISM	ENSMUSG00000063450.15	ENSMUST00000143031.8	21704	115	-27	187892	-27	9147	5prime_fragment	TRUE	canonical	0	0	junction_4	1.26621711610765	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTTATCCGGAGAGGCA	NA	False	NA	NA	False	AATAAA	-10	NA	75865064	75969808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_75865253_75900794_75900922_75925107_75925170_75926886_75926983_75927092_75927171_75927258_75927352_75934927_75935116_75936999_75937197_75939856_75939958_75943376_75943479_75945925_75946064_75950984_75951150_75952032_75952146_75953484_75953648_75955641_75955721_75955949_75956138_75957789_75957955_75959076_75959200_75961962_75962137_75965287_75965447_75965739_75965914_75967888_75968024_75969698
transcript_30173.nic	chr12	+	4064	19	ISM	ENSMUSG00000063450.15	ENSMUST00000139204.8	5789	31	23458	-26	20	0	3prime_fragment	FALSE	canonical	2	10	junction_3	5.31391139566588	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGCTTGTGTATTGGAC	7450	False	NA	NA	False	NA	NA	NA	76118809	76157700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_76119058_76121211_76121371_76122515_76122683_76134524_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
transcript_30176.known	chr12	+	2121	13	FSM	ENSMUSG00000063450.15	ENSMUST00000157033.2	2121	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.897527467855751	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAACCCTGTAA	NA	False	NA	NA	False	NA	NA	NA	75865123	75952677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_75865253_75900794_75900922_75925107_75925170_75926886_75926983_75927092_75927171_75927258_75927352_75934927_75935116_75936999_75937197_75939856_75939958_75943376_75943479_75945925_75946064_75950984_75951150_75952032
transcript_30195.known	chr12	+	3241	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	0	0	0	0	multi-exon	TRUE	canonical	3	837	junction_20	135.484134190258	2911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7911	False	NA	9	True	AATAAA	-17	NA	76302071	76366577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
transcript_30215.known	chr12	+	3040	27	FSM	ENSMUSG00000021048.8	ENSMUST00000220046.2	3040	27	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	281.366814005612	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTGGTGTTGAAACATAA	8026	False	NA	8	True	AATAAA	-16	NA	76302186	76366576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76302319_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
transcript_3022.known	chr1	+	901	4	FSM	ENSMUSG00000073633.10	ENSMUST00000097672.4	901	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.3536509852382	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	84817561	84878208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_84817690_84858812_84858922_84874210_84874384_84877717
transcript_30238.known	chr12	+	642	2	FSM	ENSMUSG00000021048.8	ENSMUST00000218110.2	642	2	0	0	0	0	multi-exon	FALSE	canonical	3	1310	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAAGTTCACTGTAGCT	8093	False	NA	NA	False	NA	NA	NA	76302253	76317768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76302319_76317191
transcript_3024.known	chr1	+	881	4	FSM	ENSMUSG00000073633.10	ENSMUST00000139562.8	881	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	23.5843639350783	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	4244	False	NA	NA	False	AATAAA	-15	NA	84844156	84878208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_84844265_84858812_84858922_84874210_84874384_84877717
transcript_30243.known	chr12	-	488	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176187.8	488	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	42	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACAAGGGCTGGAGATC	NA	False	NA	NA	False	AAAACA	-5	NA	76416167	76396799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_76397048_76402662_76402843_76416107
transcript_30244.known	chr12	-	1672	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176278.8	1672	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_2	3	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTATGAGCTTTTCTATA	NA	False	NA	-2	True	ATTAAA	-16	NA	76416376	76395718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_76397048_76402662_76402843_76416213
transcript_30245.known	chr12	+	12190	2	FSM	ENSMUSG00000033454.7	ENSMUST00000042779.4	12190	2	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAACCCGTCTACATTACT	NA	False	NA	NA	False	AATAAA	-23	NA	76417039	76443724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76417505_76431999
transcript_30248.nnic	chr12	+	3392	2	NNC	ENSMUSG00000033454.7	novel	12190	2	NA	NA	817	-8495	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTTGTTCTATAAAAGT	237	False	NA	NA	False	AATAAA	-21	NA	76417856	76435229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_76418019_76431999
transcript_30249.known	chr12	+	2526	1	FSM	ENSMUSG00000059970.8	ENSMUST00000219555.2	2526	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGCTGTCTGGCGTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	76451182	76453708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76451200_76453700
transcript_3025.known	chr1	-	3207	5	FSM	ENSMUSG00000026220.7	ENSMUST00000027422.7	3207	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	2.59807621135332	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	84912855	84883618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_84885151_84889916_84890895_84900574_84900719_84907007_84907286_84912580
transcript_30250.known	chr12	+	855	2	FSM	ENSMUSG00000073000.4	ENSMUST00000219367.2	855	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAAGTCCTGGCACCTCC	NA	False	NA	NA	False	AAAACA	-19	NA	76491270	76495434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76491440_76494748
transcript_3026.nic	chr1	-	2431	5	NIC	ENSMUSG00000026220.7	novel	3207	5	NA	NA	-80	-1003	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	3.96074487943871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCCCTCCTCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	84912935	84884621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_84885151_84889916_84890895_84900574_84900719_84907007_84907286_84912433
transcript_30262.nic	chr12	+	5419	18	NIC	ENSMUSG00000052609.10	novel	4535	18	NA	NA	-281	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_13	13.5993079408692	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGGCCTCCTTCC	6763	False	NA	22	True	NA	NA	NA	76579872	76625816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_76580593_76606902_76607293_76608979_76609078_76610528_76610599_76610870_76610918_76611030_76611182_76611275_76611408_76611571_76611755_76611932_76612026_76612265_76612353_76612557_76612592_76612941_76613041_76618377_76618417_76618820_76618844_76619168_76619520_76620020_76620135_76622630_76624051_76624448
transcript_30263.known	chr12	+	4535	18	FSM	ENSMUSG00000052609.10	ENSMUST00000219063.2	4535	18	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_13	11.6696157090046	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCCAGGGAGGGCGAGC	7284	False	NA	NA	False	NA	NA	NA	76580393	76625456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76580593_76606902_76607293_76608979_76609078_76610528_76610599_76610870_76610918_76611030_76611182_76611275_76611408_76611571_76611755_76611932_76612026_76612265_76612353_76612557_76612592_76612941_76613041_76618377_76618417_76618823_76618844_76619168_76619520_76620020_76620135_76622630_76624051_76624448
transcript_30274.known	chr12	+	3434	12	FSM	ENSMUSG00000052609.10	ENSMUST00000218461.2	3434	12	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	10.8239098662816	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	7224	False	NA	NA	False	NA	NA	NA	76580333	76614831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76580593_76606902_76607293_76608979_76609078_76610528_76610599_76610870_76610918_76611030_76611182_76611275_76611408_76611571_76611755_76611932_76612026_76612265_76612353_76612557_76612592_76612941
transcript_30278.known	chr12	+	2613	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	14	True	AATAAA	-15	NA	76884187	76968186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
transcript_3028.nic	chr1	-	3049	4	ISM	ENSMUSG00000026220.7	ENSMUST00000027422.7	3207	5	-83	5007	-83	-5007	5prime_fragment	FALSE	canonical	2	5	junction_2	2.82842712474619	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CACAAAAACACCTAACAGAA	NA	False	NA	NA	False	NA	NA	NA	84912938	84888625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_84890895_84900574_84900719_84907007_84907286_84912580
transcript_30288.nnic	chr12	+	2266	6	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-7665	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	113.544000281829	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	9924	False	NA	14	True	AATAAA	-15	NA	76948594	76968186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_76949034_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
transcript_30289.nnic	chr12	+	2733	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	-8	2263	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	214.20317457965	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCCGCTGATTTCTCCT	NA	False	NA	23	True	AATAAA	-14	NA	76812320	76832217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829728_76829924
transcript_30292.nnic	chr12	+	593	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	-2	112	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	214.20317457965	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCACAGCTAGAGTGAGAT	NA	False	NA	6	True	GATAAA	-16	NA	76812309	76830066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829728_76829924
transcript_30293.known	chr12	+	676	4	FSM	ENSMUSG00000090258.8	ENSMUST00000041262.14	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_2	1.88561808316413	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTATGTTTTCTTTT	NA	False	NA	9	True	AATGAA	-3	NA	76812311	76829954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586
transcript_30296.known	chr12	+	535	3	FSM	ENSMUSG00000090258.8	ENSMUST00000110399.3	535	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	248	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAAGCCTAATGGTTTGT	NA	False	NA	-24	True	NA	NA	NA	76812348	76829921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_76812413_76820031_76820168_76829586
transcript_30297.known	chr12	-	1010	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	0	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTGGGTCTCTGTCTTC	NA	False	NA	-5	True	AATAAA	-16	NA	76842273	76839110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_76839775_76841927
transcript_30301.known	chr12	-	3158	7	FSM	ENSMUSG00000021062.16	ENSMUST00000021459.14	3158	7	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	4.01732359773132	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGTGGGTCTGTATGAA	NA	False	NA	-2	True	AATAAA	-18	NA	76869327	76844733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_76847176_76847339_76847406_76848665_76848756_76849841_76849920_76850341_76850403_76851216_76851278_76868967
transcript_30305.nic	chr12	-	2098	6	NIC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-59	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	23.3032186618072	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGGTAGTAGTGTCTTCT	NA	False	NA	-4	True	AATAAA	-16	NA	77009034	76984046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_76985530_76986203_76986289_76986740_76986865_76999942_77000051_77008036_77008064_77008763
transcript_30306.nic	chr12	-	2773	5	NIC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-59	2	intron_retention	FALSE	canonical	3	16	junction_4	22.1288838399048	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	-3	True	AATAAA	-17	NA	77009034	76984045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_76986289_76986740_76986865_76999942_77000051_77008036_77008064_77008763
transcript_30307.nic	chr12	-	2071	5	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-59	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	27.5714979643834	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGGTAGTAGTGTCTTCT	NA	False	NA	-4	True	AATAAA	-16	NA	77009034	76984046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_76985530_76986203_76986289_76986740_76986865_76999942_77000051_77008763
transcript_30310.known	chr12	-	1942	5	FSM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	22.1697992773954	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTAGTGTCTTCTTAAC	NA	False	NA	0	True	AATAAA	-20	NA	77008959	76984042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
transcript_30312.nic	chr12	-	2746	4	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-59	2	intron_retention	FALSE	canonical	3	20	junction_1	20.7257220756131	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	-3	True	AATAAA	-17	NA	77009034	76984045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_76986289_76986740_76986865_76999942_77000051_77008763
transcript_30315.known	chr12	-	1926	4	FSM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	8.28653526310404	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	77008975	76984047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008763
transcript_30316.known	chr12	-	752	4	FSM	ENSMUSG00000059436.14	ENSMUST00000218640.2	752	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	20.0499376557634	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTCCTCCCTCACCTCT	NA	False	NA	NA	False	NA	NA	NA	77008799	76984964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_76985530_76986740_76986865_77008036_77008064_77008763
transcript_30319.nic	chr12	-	2340	4	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-59	-404	intron_retention	FALSE	canonical	3	20	junction_1	20.7257220756131	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTCTTTCTGTGTGTAT	NA	False	NA	-3	True	CATAAA	-16	NA	77009034	76984451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_76986289_76986740_76986865_76999942_77000051_77008763
transcript_30321.nic	chr12	-	3196	3	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-59	0	intron_retention	FALSE	canonical	3	56	junction_2	6.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	77009034	76984047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_76986865_76999942_77000051_77008763
transcript_30322.known	chr12	+	2980	13	FSM	ENSMUSG00000021065.17	ENSMUST00000177595.9	2980	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	37.3482113211448	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTTTGTGAAGTTTCTG	NA	False	NA	9	True	AATAAA	-10	NA	77284898	77522759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_77284974_77324134_77324230_77325717_77325807_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
transcript_30325.known	chr12	+	2765	12	FSM	ENSMUSG00000021065.17	ENSMUST00000171770.10	2765	12	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	20.7412233753807	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCCATTAGGAAGTTTT	NA	False	NA	-94	True	AATAAA	-36	NA	77284921	77522656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_77284974_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
transcript_30328.known	chr12	+	3358	12	FSM	ENSMUSG00000021065.17	ENSMUST00000062804.8	3358	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	14.8022781360346	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGTGTGGTGGCATCT	NA	False	NA	NA	False	TATAAA	-13	NA	77285838	77523112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_77286028_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
transcript_30330.nnic	chr12	+	2902	11	NIC	ENSMUSG00000021065.17	novel	2980	13	NA	NA	-104	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	30.4065782356384	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTTTGTGAAGTTTCTG	NA	False	NA	9	True	AATAAA	-10	NA	77284794	77522759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_77284974_77324134_77324230_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
transcript_30333.nnic	chr12	+	3257	11	NIC	ENSMUSG00000021065.17	novel	3358	12	NA	NA	-93	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	26.8158535198863	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTTTGTGAAGTTTCTG	NA	False	NA	9	True	AATAAA	-10	NA	77285493	77522759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_77286028_77324134_77324230_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
transcript_30340.known	chr12	+	3300	23	FSM	ENSMUSG00000047454.13	ENSMUST00000110388.10	3300	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	13.5066558431803	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTATTGTGCGGCCT	NA	False	NA	21	True	AATAAA	-24	NA	78273426	78731541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077_78670198_78672907_78672967_78673880_78674035_78684231_78684354_78701580_78701669_78711264_78711339_78716597_78716663_78727064_78727169_78729491_78729589_78730551
transcript_30348.known	chr12	+	3570	24	FSM	ENSMUSG00000047454.13	ENSMUST00000052472.6	3570	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	23.8723764876529	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTGCGGCCTTGTTA	NA	False	NA	26	True	AATAAA	-29	NA	78273152	78731546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78551390_78551526_78569671_78569729_78579430_78579473_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077_78670198_78672907_78672967_78673880_78674035_78684231_78684354_78701580_78701669_78711264_78711339_78716597_78716663_78727064_78727169_78729491_78729589_78730551
transcript_30351.nic	chr12	+	2906	15	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	-127	18	combination_of_known_junctions	FALSE	canonical	3	104	junction_7	16.9175672492428	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCCACTTTAGTTTGGAG	NA	False	NA	NA	False	AAAAAG	-12	NA	78795553	78884873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
transcript_30352.nic	chr12	+	3084	15	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	-58	265	combination_of_known_junctions	FALSE	canonical	3	104	junction_7	16.9175672492428	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAATGCAGCCTCCAGT	NA	False	NA	NA	False	NA	NA	NA	78795622	78885120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
transcript_30353.nic	chr12	+	5292	15	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	104	junction_7	16.9175672492428	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCACTGGACACTTTC	NA	False	NA	16	True	AATAAA	-25	NA	78795654	78887360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
transcript_30357.known	chr12	+	5470	15	FSM	ENSMUSG00000021112.10	ENSMUST00000082024.7	5470	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	32.6002378856977	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGGTGTCCTTTATTGG	NA	False	NA	NA	False	AATACA	-15	NA	78795765	78887488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_78795881_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
transcript_3036.known	chr1	+	3805	9	FSM	ENSMUSG00000036707.17	ENSMUST00000113360.8	3805	9	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_1	34.2579826463848	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGATGTCCTTTAGAC	NA	False	NA	15	True	AATAAA	-16	NA	85721161	85779297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_85721543_85746077_85746235_85763043_85763209_85765006_85765126_85769918_85770088_85772313_85772374_85775130_85775197_85775997_85776142_85776753
transcript_30361.nic	chr12	+	1736	12	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	-20	-185	combination_of_known_junctions	FALSE	canonical	3	104	junction_7	12.9071701515985	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGAAAAGACCTATCATCT	NA	False	NA	NA	False	NA	NA	NA	78795660	78876487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426
transcript_30368.known	chr12	+	5283	15	FSM	ENSMUSG00000021112.10	ENSMUST00000219197.2	5283	15	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	36.460840049879	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCACTGGACACTTTC	NA	False	NA	16	True	AATAAA	-25	NA	78795680	78887360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865960_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
transcript_30370.known	chr12	-	3667	9	FSM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	0	0	0	0	multi-exon	FALSE	canonical	3	904	junction_8	86.5761947650739	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCCCACATTTACACTGT	NA	False	NA	NA	False	AATAAA	-25	NA	78908412	78887498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
transcript_30371.nic	chr12	-	2562	8	NIC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	68	0	intron_retention	FALSE	canonical	3	904	junction_7	87.6938086847222	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAATGATTTTAAAAACA	37	False	NA	-21	True	TTTAAA	-18	NA	78908344	78889775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
transcript_30372.nic	chr12	-	777	8	ISM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	4	4501	4	-2224	5prime_fragment	FALSE	canonical	3	904	junction_7	92.3484969989181	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTGGAAATTGGCACTT	NA	False	NA	NA	False	NA	NA	NA	78908408	78891999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
transcript_30374.nic	chr12	-	351	4	ISM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	85	9797	-58	-1326	5prime_fragment	FALSE	canonical	3	904	junction_3	102.027229480936	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAAATAAAGCCCAAGTGA	54	False	NA	NA	False	NA	NA	NA	78908327	78897295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_78897314_78899038_78899119_78904000_78904119_78908192
transcript_30379.known	chr12	+	3405	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	0	0	0	0	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	1581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTTAAGCCAGC	NA	False	NA	NA	False	NA	NA	NA	78908592	78933784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
transcript_30385.known	chr12	+	1642	1	FSM	ENSMUSG00000021116.11	ENSMUST00000219754.2	1642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATGAAAAAAGTCAGAAT	NA	False	NA	NA	False	ATTAAA	-5	NA	78908858	78910500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_78908900_78910500
transcript_30386.known	chr12	-	1583	9	FSM	ENSMUSG00000021118.8	ENSMUST00000021544.8	1583	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.60868021243675	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGGTTCTTGTAGTTA	NA	False	NA	0	True	AATAAA	-21	NA	78953738	78935464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_78936082_78936685_78936765_78938902_78938987_78940850_78940953_78941161_78941350_78941646_78941739_78942905_78943088_78946828_78946994_78953664
transcript_30388.nic	chr12	-	3914	3	NIC	ENSMUSG00000046157.14	novel	3621	3	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	1.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGCTGTGACCCATCTG	NA	False	NA	-3	True	CATAAA	-24	NA	79054099	79008570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_79011951_79024534_79024716_79053746
transcript_30389.known	chr12	-	537	3	FSM	ENSMUSG00000046157.14	ENSMUST00000174721.8	537	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACTACTCCCAGTTCGAC	NA	False	NA	NA	False	NA	NA	NA	79054114	79011622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_79011951_79024534_79024716_79054086
transcript_30390.known	chr12	-	3860	3	FSM	ENSMUSG00000046157.14	ENSMUST00000056660.13	3860	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	2.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACTGGCTGTGACCCAT	NA	False	NA	-6	True	CATAAA	-21	NA	79054051	79008573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_79011948_79024534_79024716_79053746
transcript_30391.nic	chr12	-	3881	3	NIC	ENSMUSG00000046157.14	novel	3860	3	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	3	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACTGGCTGTGACCCAT	NA	False	NA	-6	True	CATAAA	-21	NA	79054412	79008573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_79011948_79024534_79024716_79054086
transcript_30393.known	chr12	+	6439	29	FSM	ENSMUSG00000060716.8	ENSMUST00000039928.7	6439	29	0	0	0	0	multi-exon	TRUE	canonical	3	125	junction_6	14.4205688557161	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTTGTGGATATTTA	6125	False	NA	12	True	AATAAA	-24	NA	79075936	79128429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_79076195_79087265_79087437_79095965_79096029_79097039_79097190_79100369_79100454_79101262_79101345_79101433_79102189_79108745_79108828_79109308_79109401_79110892_79111044_79111221_79111350_79112434_79112546_79113394_79113482_79113847_79114010_79114735_79114817_79115145_79115329_79115792_79115902_79116677_79116791_79117561_79117739_79118070_79118169_79119509_79119688_79120172_79120329_79121363_79121465_79122174_79122317_79123227_79123371_79123479_79123610_79125421_79125509_79125733_79125881_79126211
transcript_30405.known	chr12	-	2339	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGACTTGTTTTTTTAT	NA	False	NA	-1	True	AATAAA	-30	NA	79136425	79127437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
transcript_3041.known	chr1	+	2230	6	FSM	ENSMUSG00000026223.16	ENSMUST00000027425.16	2230	6	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	14.9853261559434	649	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAACCCAAAACCT	NA	False	NA	-8	True	NA	NA	NA	85822001	85836396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_85822511_85830730_85830872_85832934_85833124_85834142_85834254_85834728_85834880_85835267
transcript_30412.known	chr12	-	1490	6	FSM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_4	37.0534748707864	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCATTTTCTGATTCGT	NA	False	NA	NA	False	NA	NA	NA	79219441	79202790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218993
transcript_30416.known	chr12	-	1059	5	FSM	ENSMUSG00000021124.14	ENSMUST00000162789.9	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	311.173183291877	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGTTTTACAGTTGTGAG	NA	False	NA	84	True	AATACA	-36	NA	79219222	79202943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79218993
transcript_30420.known	chr12	-	3262	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTATGGGGATATTGGA	NA	False	NA	-18	True	AATAAA	-40	NA	79239067	79221110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
transcript_30424.known	chr12	+	1678	7	FSM	ENSMUSG00000021123.13	ENSMUST00000021548.12	1678	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGTGTCTTTTCTCAG	375	False	NA	NA	False	AATAAA	-19	NA	79255687	79269439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_79255883_79257614_79257734_79258161_79258318_79259426_79259532_79260317_79260528_79265449_79265640_79268736
transcript_30425.known	chr12	-	824	3	FSM	ENSMUSG00000066440.6	ENSMUST00000219571.2	824	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	9.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCACCACCACTGCCC	NA	False	NA	NA	False	NA	NA	NA	79343052	79340203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_79340679_79342250_79342547_79342999
transcript_30426.known	chr12	-	4255	1	FSM	ENSMUSG00000066440.6	ENSMUST00000218510.2	4255	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79343075	79338820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_79338800_79343100
transcript_30427.known	chr12	-	2990	2	FSM	ENSMUSG00000021127.8	ENSMUST00000021552.3	2990	2	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGTCTATAGGTTTTT	9167	False	NA	92	True	AATAAA	-18	NA	80159787	80154527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_80157323_80159592
transcript_30436.known	chr12	-	2664	21	FSM	ENSMUSG00000015143.16	ENSMUST00000167327.2	2664	21	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	39.4366263770115	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCCCCTGCCTCCCTCCA	NA	False	NA	NA	False	NA	NA	NA	80306865	80215095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_80215255_80215631_80215791_80216956_80217023_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699_80243788_80245754_80245842_80251735_80251856_80256132_80256248_80306760
transcript_30443.known	chr12	-	3734	21	FSM	ENSMUSG00000015143.16	ENSMUST00000021554.16	3734	21	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_2	44.8659113358906	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTTTGCTTGTTCCTT	NA	False	NA	-5	True	ATTAAA	-16	NA	80307145	80214320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_80215255_80215631_80215791_80217459_80217541_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699_80243788_80245754_80245842_80251735_80251856_80256132_80256248_80306760
transcript_30452.nnic	chr12	-	3221	20	NIC	ENSMUSG00000015143.16	novel	3734	21	NA	NA	-124	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_2	66.6380640396115	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTACGTTAAAAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	80307269	80214876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_80215255_80215631_80215791_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699_80243788_80245754_80245842_80251735_80251856_80256132_80256248_80306760
transcript_30457.known	chr12	-	5706	9	FSM	ENSMUSG00000049106.8	ENSMUST00000054145.8	5706	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	6.59071316323203	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGCCTTCCTCCTCTCT	NA	False	NA	-2	True	AATAAA	-16	NA	80483375	80382621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_80387051_80395093_80395222_80410777_80410845_80423291_80423506_80444426_80444557_80445542_80445683_80446722_80446760_80451328_80451473_80482958
transcript_30466.known	chr12	+	3310	9	FSM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_6	24.0724816959116	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGATTGTAAATGTG	2663	False	NA	22	True	AATAAA	-19	NA	80509868	80544896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
transcript_30473.known	chr12	+	4222	16	FSM	ENSMUSG00000021130.9	ENSMUST00000219993.2	4222	16	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	5.44630353746669	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATAGGCTGATGCCTTTA	NA	False	NA	3	True	AATAAA	-18	NA	80565050	80650666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80565423_80565829_80566120_80619072_80619231_80622632_80622732_80623275_80623344_80624161_80624228_80626738_80626861_80627995_80628084_80630423_80630509_80630786_80630891_80635232_80635360_80637368_80637462_80639174_80639259_80643854_80643997_80644791_80644918_80648468
transcript_30474.known	chr12	+	3922	15	FSM	ENSMUSG00000021130.9	ENSMUST00000021558.8	3922	15	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	4.40141442942968	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGATGCCTTTATTTCAG	NA	False	NA	9	True	AATAAA	-24	NA	80565763	80650672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80566120_80619072_80619231_80622632_80622732_80623275_80623344_80624161_80624228_80626738_80626861_80627995_80628084_80630423_80630509_80630786_80630891_80635232_80635360_80637368_80637462_80639174_80639259_80643854_80643997_80644791_80644918_80648468
transcript_30475.known	chr12	+	5201	7	FSM	ENSMUSG00000048833.10	ENSMUST00000085245.7	5201	7	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	10.9455724179028	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTATGTGAGTGGCTCTTT	NA	False	NA	12	True	ATTAAA	-17	NA	80691012	80730111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905_80724041_80726248
transcript_30477.known	chr12	+	2155	6	FSM	ENSMUSG00000048833.10	ENSMUST00000217889.2	2155	6	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	11.4647285183732	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATACTGACTCTTCTGGTT	NA	False	NA	NA	False	AATAAA	-12	NA	80691283	80725128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905
transcript_30479.known	chr12	-	506	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTATGATAGCGATCCTG	NA	False	NA	NA	False	NA	NA	NA	80690606	80681130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
transcript_3048.known	chr1	+	4696	22	FSM	ENSMUSG00000062590.14	ENSMUST00000135973.8	4696	22	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_21	14.7732675162462	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTAAGGCTAAAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	86082505	86187549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998_86180115_86184947
transcript_30481.known	chr12	-	1293	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	0	0	0	0	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	1835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTTTTCTTATTTATTT	NA	False	NA	-1	True	AATAAA	-31	NA	80691115	80680795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
transcript_30485.known	chr12	-	981	3	FSM	ENSMUSG00000021131.15	ENSMUST00000218740.2	981	3	0	0	0	0	multi-exon	FALSE	canonical	3	8000	junction_2	695.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACATATGAACAGAGCGTG	NA	False	NA	NA	False	NA	NA	NA	80690885	80683839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_80684385_80687730_80687819_80690537
transcript_30486.known	chr12	-	944	2	FSM	ENSMUSG00000044062.8	ENSMUST00000153297.2	944	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATGGATATTTTATTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	80739240	80733143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_80733782_80738934
transcript_30487.known	chr12	+	3535	13	FSM	ENSMUSG00000066438.7	ENSMUST00000140770.2	3535	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.32812092461931	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTACTGGTTTCCTTTGTT	NA	False	NA	4	True	CATAAA	-5	NA	80739364	80770988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80739802_80752317_80752412_80752778_80752869_80753126_80753204_80753945_80754038_80754955_80755009_80763994_80764090_80765686_80765781_80767357_80767537_80767986_80768120_80768222_80768368_80768719_80768870_80769092
transcript_30490.known	chr12	+	956	2	FSM	ENSMUSG00000066438.7	ENSMUST00000153762.2	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGAATAGTTCCTCTG	NA	False	NA	NA	False	GATAAA	-15	NA	80768505	80769684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80768870_80769092
transcript_30492.known	chr12	+	2127	7	FSM	ENSMUSG00000021133.10	ENSMUST00000220238.2	2127	7	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	21.4689698557399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGCACTGGCTGCCTTG	3410	False	NA	NA	False	NA	NA	NA	80837283	80924647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80837590_80874799_80875018_80897987_80898051_80915200_80915399_80916848_80916985_80920922_80921351_80923869
transcript_30493.known	chr12	+	4977	6	FSM	ENSMUSG00000021133.10	ENSMUST00000068519.7	4977	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	3.86781592116274	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGATGTAGTCCTTCCC	3459	False	NA	17	True	AATAAA	-19	NA	80837332	80927609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80837590_80874799_80875018_80915200_80915399_80916848_80916985_80920922_80921351_80923869
transcript_30507.known	chr12	+	1491	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110352.10	1491	8	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	564.545762863691	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
transcript_3051.known	chr1	+	2160	21	FSM	ENSMUSG00000062590.14	ENSMUST00000131412.8	2160	21	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_14	12.2982722363753	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCATTCTCTTTATTGT	NA	False	NA	8	True	AATAAA	-13	NA	86082536	86180211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998
transcript_30510.known	chr12	+	1568	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992358	80997277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
transcript_30517.known	chr12	+	2720	7	FSM	ENSMUSG00000021134.18	ENSMUST00000153056.8	2720	7	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	608.09467921442	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
transcript_3052.nic	chr1	+	2383	21	NIC	ENSMUSG00000062590.14	novel	4696	22	NA	NA	0	-2201	combination_of_known_junctions	FALSE	canonical	2	5	junction_20	24.1024376360566	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGATCTCAGTTTGCTCTCT	NA	False	NA	3	True	AATACA	-14	NA	86082501	86185348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86184947
transcript_30526.known	chr12	+	489	2	FSM	ENSMUSG00000021134.18	ENSMUST00000151968.2	489	2	0	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAAGTTAAAGTAACTGC	NA	False	NA	NA	False	NA	NA	NA	80992352	80993744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80992447_80993349
transcript_30527.known	chr12	+	538	2	FSM	ENSMUSG00000021134.18	ENSMUST00000152662.2	538	2	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80992307	80993622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_80992573_80993349
transcript_30531.nnic	chr12	+	3172	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7443	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	46.2909728420852	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTGGTGCCTCTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	81066138	81233184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_81066203_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_30533.nnic	chr12	+	3258	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7428	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	56.7330493529908	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTGGTGCCTCTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	81066153	81233184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_81066271_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_30534.nnic	chr12	+	3225	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7428	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	43.9365072196991	208	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTGGTGCCTCTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	81066153	81233184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_81066271_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_30535.known	chr12	+	3496	13	FSM	ENSMUSG00000021136.14	ENSMUST00000110347.9	3496	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	48.9003379901975	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81073581	81233188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_30536.known	chr12	+	3439	13	FSM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	31.9699294476683	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTGGTGCCTCTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	81073601	81233184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_30545.known	chr12	-	1043	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	83.1899032335054	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGAAATTGCTCTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	81579679	81405633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
transcript_30546.known	chr12	-	2284	6	FSM	ENSMUSG00000021139.18	ENSMUST00000166664.2	2284	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	88.6715286887511	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTCAACAGTGTTCAAAG	NA	False	NA	NA	False	NA	NA	NA	81579656	81517376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
transcript_30551.known	chr12	-	421	4	FSM	ENSMUSG00000021139.18	ENSMUST00000171459.8	421	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	144.144217905387	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTCTCATTAGTCATG	NA	False	NA	NA	False	NA	NA	NA	81579651	81521332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81521424_81527704_81527777_81551317_81551414_81579489
transcript_30553.known	chr12	-	668	4	FSM	ENSMUSG00000091803.8	ENSMUST00000110340.9	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	77.5127229699888	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	998	False	NA	-46	True	AATAAA	-19	NA	81531884	81405799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81531670
transcript_30554.known	chr12	-	2007	4	FSM	ENSMUSG00000091803.8	ENSMUST00000002757.11	2007	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	95.530099968544	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAACTAAAGACAAAGA	988	False	NA	NA	False	NA	NA	NA	81531894	81517477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81531670
transcript_30555.known	chr12	-	431	4	FSM	ENSMUSG00000091803.8	ENSMUST00000168463.8	431	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	143.25501736414	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	995	False	NA	-6	True	ATTAAA	-14	NA	81531887	81518866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531670
transcript_30556.known	chr12	-	685	3	FSM	ENSMUSG00000091803.8	ENSMUST00000169124.2	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_2	58.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCTAAGAATTATTTTAAA	994	False	NA	NA	False	NA	NA	NA	81531888	81521028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81521424_81527704_81527777_81531670
transcript_30559.known	chr12	-	458	4	FSM	ENSMUSG00000091803.8	ENSMUST00000171237.8	458	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	153.914117466708	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	1279	False	NA	-6	True	ATTAAA	-14	NA	81531603	81518866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81531539
transcript_30560.known	chr12	-	4655	4	FSM	ENSMUSG00000090935.11	ENSMUST00000163402.8	4655	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	30.6920185064456	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATAATGGTACATGTCT	NA	False	NA	NA	False	NA	NA	NA	81579685	81544714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81548941_81551317_81551414_81557602_81557740_81579489
transcript_30565.known	chr12	-	3305	3	FSM	ENSMUSG00000090935.11	ENSMUST00000164431.2	3305	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	56.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTTGTTTTTGTTTCCTT	NA	False	NA	-6	True	AATAGA	-12	NA	81579673	81545915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81548941_81551317_81551414_81579489
transcript_30570.known	chr12	-	691	3	FSM	ENSMUSG00000090935.11	ENSMUST00000169158.2	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_2	16.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	81579654	81551024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81551414_81557602_81557740_81579489
transcript_30572.known	chr12	-	1003	8	FSM	ENSMUSG00000002679.15	ENSMUST00000002756.14	1003	8	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_7	64.9976451692753	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCATCATGCCTTTCCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	81641732	81620338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
transcript_30576.known	chr12	+	2042	3	FSM	ENSMUSG00000042734.7	ENSMUST00000036116.6	2042	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	7	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAATGTTAATAGGATT	NA	False	NA	NA	False	ATTAAA	-12	NA	81678142	81711715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_81678576_81707339_81707523_81710289
transcript_30578.known	chr12	+	4754	4	FSM	ENSMUSG00000042734.7	ENSMUST00000218362.2	4754	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	13.9522996909709	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTCTATGTTGCTAGCT	NA	False	NA	8	True	CATAAA	-20	NA	81678022	81714331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_81678576_81707339_81707523_81710289_81711211_81711234
transcript_3058.known	chr1	+	3112	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	0	0	0	0	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCAATCCACACACCA	NA	False	NA	NA	False	NA	NA	NA	85992340	86066873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
transcript_30581.known	chr12	-	4564	11	FSM	ENSMUSG00000042724.9	ENSMUST00000035987.9	4564	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	4.27083130081252	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGCCGTGAGGCAGTAG	NA	False	NA	NA	False	AGTAAA	-20	NA	81827949	81767783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81769298_81770837_81771651_81772495_81772609_81776456_81776611_81777310_81777434_81778765_81779007_81780853_81781030_81781843_81781993_81790571_81790753_81819453_81819868_81827263
transcript_30584.known	chr12	-	3227	8	FSM	ENSMUSG00000042724.9	ENSMUST00000223292.2	3227	8	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	3.18157963590287	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGAATGGATGTAT	NA	False	NA	NA	False	NA	NA	NA	81827783	81775187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_81776611_81777310_81777434_81778765_81779007_81780853_81781030_81781843_81781993_81790571_81790753_81819453_81819868_81827263
transcript_30590.nic	chr12	+	6268	24	NIC	ENSMUSG00000042700.17	novel	8215	23	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_3	21.8092781282731	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGAATGTCTTTATTT	9982	False	NA	18	True	NA	NA	NA	82216113	82497045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_82216278_82216789_82216851_82281236_82281303_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
transcript_30595.known	chr12	+	5907	22	FSM	ENSMUSG00000042700.17	ENSMUST00000220963.2	5907	22	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	22.1136007440779	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAATACTCTTTATTAT	NA	False	NA	NA	False	ATTAAA	-27	NA	82216219	82493903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_82216278_82216789_82216851_82281236_82281303_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590
transcript_30606.known	chr12	+	1831	4	FSM	ENSMUSG00000042700.17	ENSMUST00000222849.2	1831	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	11.0855260988773	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82216249	82359798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_82216278_82216789_82216851_82281236_82281303_82358122
transcript_30608.known	chr12	+	6179	24	FSM	ENSMUSG00000042700.17	ENSMUST00000222298.2	6179	24	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_23	41.6386471636405	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAATGTCTTTATTTTTT	NA	False	NA	21	True	NA	NA	NA	82216799	82497048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_82216851_82281236_82281303_82312730_82312800_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496179_82496674
transcript_30614.known	chr12	+	2008	14	FSM	ENSMUSG00000021222.10	ENSMUST00000021645.9	2008	14	0	0	0	0	multi-exon	TRUE	canonical	3	216	junction_9	23.528907060372	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTCTAATTTTGCCAAA	NA	False	NA	10	True	NA	NA	NA	83567239	83588689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
transcript_30628.known	chr12	+	2005	13	FSM	ENSMUSG00000021222.10	ENSMUST00000223291.2	2005	13	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_8	22.5331545850898	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAATTTTGCCAAAGTATA	NA	False	NA	15	True	NA	NA	NA	83572773	83588694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
transcript_30632.nnic	chr12	-	3004	13	NNC	ENSMUSG00000042628.9	novel	4420	13	NA	NA	-9291	214	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	45.6772341787703	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCCCTCTCCGACTGC	NA	False	NA	-2	True	AATAAA	-21	NA	83653287	83594654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83651973_83652098_83653185
transcript_30633.known	chr12	-	4036	12	FSM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_11	24.5928834697229	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGCCATCGTATGGATC	NA	False	NA	NA	False	TTTAAA	-3	NA	83643996	83593622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83643770
transcript_30636.nnic	chr12	-	2899	12	NNC	ENSMUSG00000042628.9	novel	4036	12	NA	NA	-9310	214	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	36.607139257638	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCCCTCTCCGACTGC	NA	False	NA	-2	True	AATAAA	-21	NA	83653306	83594654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83653185
transcript_30673.nic	chr12	+	1107	10	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-41	19124	-41	0	5prime_fragment	FALSE	canonical	3	212	junction_1	85.0034131486117	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAGAAAGACA	3940	False	NA	-11	True	NA	NA	NA	83678984	83710773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
transcript_30675.nic	chr12	+	1145	10	NIC	ENSMUSG00000010608.16	novel	1116	11	NA	NA	-36	1094	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	135.120613700921	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTATTCTTGATTTTTCA	3945	False	NA	NA	False	NA	NA	NA	83678989	83707452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368
transcript_30680.nic	chr12	+	1086	9	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-41	22445	-41	1094	5prime_fragment	FALSE	canonical	3	212	junction_1	75.2462623656484	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTATTCTTGATTTTTCA	3940	False	NA	NA	False	NA	NA	NA	83678984	83707452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368
transcript_30687.known	chr12	+	788	8	FSM	ENSMUSG00000010608.16	ENSMUST00000182036.8	788	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	140.669245873765	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAGATGAAGAAACAAAGCG	4020	False	NA	NA	False	NA	NA	NA	83679064	83706238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196
transcript_30691.nic	chr12	+	804	7	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-41	23659	-41	0	5prime_fragment	FALSE	canonical	3	212	junction_1	78.5509388868141	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAGATGAAGAAACAAAGCG	3940	False	NA	NA	False	NA	NA	NA	83678984	83706238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196
transcript_30692.nic	chr12	+	932	7	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-41	23531	-41	8	5prime_fragment	FALSE	canonical	3	212	junction_1	78.5509388868141	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAGAAGGAGGACGTAT	3940	False	NA	NA	False	AAGAAA	-3	NA	83678984	83706366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196
transcript_30698.known	chr12	+	608	6	FSM	ENSMUSG00000010608.16	ENSMUST00000183154.8	608	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	173.243643462033	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTACTACTACAGTTTTT	3986	False	NA	NA	False	ATTAAA	-21	NA	83679030	83693004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910
transcript_30699.nic	chr12	+	531	5	ISM	ENSMUSG00000010608.16	ENSMUST00000182036.8	788	8	-75	13234	-36	0	5prime_fragment	FALSE	canonical	3	90	junction_2	164.700485730917	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTACTACTACAGTTTTT	3945	False	NA	NA	False	ATTAAA	-21	NA	83678989	83693004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910
transcript_307.known	chr1	+	1811	13	FSM	ENSMUSG00000033793.13	ENSMUST00000192698.3	1811	13	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	140.296783640966	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATATAATTAAAGGATTCT	NA	False	NA	-12	True	NA	NA	NA	5153376	5232642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
transcript_30701.nic	chr12	+	472	4	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-41	36893	-41	0	5prime_fragment	FALSE	canonical	3	212	junction_1	105.52830057488	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTACTACTACAGTTTTT	3940	False	NA	NA	False	ATTAAA	-21	NA	83678984	83693004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910
transcript_30702.known	chr12	+	1060	1	FSM	ENSMUSG00000010608.16	ENSMUST00000183242.2	1060	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAGGAAAAGAAGGA	NA	False	NA	NA	False	ACTAAA	-38	NA	83705298	83706358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_83705300_83706400
transcript_30703.known	chr12	+	4226	19	FSM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	109.211215111695	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGTGTAGTGCATATA	3981	False	NA	13	True	AATAAA	-13	NA	83679025	83729897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
transcript_30707.known	chr12	+	2690	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCTCTCTGTCCTGGCTGG	3345	False	NA	9	True	ATTAAA	-20	NA	83734925	83781869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
transcript_30714.known	chr12	+	1978	7	FSM	ENSMUSG00000019969.15	ENSMUST00000221993.2	1978	7	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_1	22.6862660362314	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTTTTAACTAAATAAGT	3365	False	NA	NA	False	NA	NA	NA	83734945	83772457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269
transcript_30716.nic	chr12	-	3716	13	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_10	24.4108354811729	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTATAGTTCTGTTTT	NA	False	NA	-2	True	NA	NA	NA	83968697	83840809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
transcript_30720.nic	chr12	-	3631	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_8	18.4936888944748	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTATAGTTCTGTTTT	NA	False	NA	-2	True	NA	NA	NA	83968697	83840809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
transcript_30722.nic	chr12	-	2785	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	11	557	combination_of_known_junctions	FALSE	canonical	3	81	junction_8	18.4936888944748	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATATATATATATCAAAA	NA	False	NA	NA	False	GATAAA	-41	NA	83968697	83841655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
transcript_30724.nic	chr12	-	3486	11	NIC	ENSMUSG00000021224.16	novel	3549	11	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	27.6550176279098	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTATAGTTCTGTTTTTA	NA	False	NA	0	True	NA	NA	NA	83968697	83840807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
transcript_30725.known	chr12	-	3549	11	FSM	ENSMUSG00000021224.16	ENSMUST00000117217.8	3549	11	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_6	36.1696004954437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTATAGTTCTGTTTTTA	NA	False	NA	0	True	NA	NA	NA	83968708	83840807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
transcript_30726.nic	chr12	-	3598	11	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_7	26.5375206076227	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTATAGTTCTGTTTT	NA	False	NA	-2	True	NA	NA	NA	83968697	83840809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83923441_83923587_83968591
transcript_30727.nic	chr12	-	2643	11	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	11	562	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	27.6550176279098	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATATATATCAAAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	83968697	83841650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
transcript_30735.known	chr12	-	441	3	FSM	ENSMUSG00000021224.16	ENSMUST00000125089.2	441	3	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	25.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAACATCT	NA	False	NA	NA	False	NA	NA	NA	83923572	83878601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_83878771_83888991_83889133_83923441
transcript_30736.known	chr12	+	2344	1	FSM	ENSMUSG00000046791.9	ENSMUST00000053744.9	2344	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTTTTCTAAGCCTAG	3975	False	NA	17	True	ATTAAA	-21	NA	83997381	83999725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_83997400_83999700
transcript_30737.known	chr12	+	2196	3	FSM	ENSMUSG00000021226.8	ENSMUST00000021649.8	2196	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	1.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTATGTTGTCCTTCCT	NA	False	NA	NA	False	AATAAA	-19	NA	84034634	84040647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84035256_84037267_84037471_84039275
transcript_30739.known	chr12	+	2272	3	FSM	ENSMUSG00000072949.7	ENSMUST00000168120.3	2272	3	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	2	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAAGTGAAGTCTCAAAG	2819	False	NA	NA	False	AATAAA	-17	NA	84056263	84065145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84056741_84061152_84061356_84063553
transcript_3074.nic	chr1	+	3165	22	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	-459	6384	-227	0	5prime_fragment	FALSE	canonical	3	1352	junction_6	88.9904323630029	1675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAGGAGGAGGA	NA	False	NA	48	True	NA	NA	NA	85991881	86060489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435
transcript_30741.known	chr12	+	3431	4	FSM	ENSMUSG00000021228.16	ENSMUST00000021653.8	3431	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.54606056566195	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGTTTCCTTAATCAT	NA	False	NA	NA	False	AATAAA	-20	NA	84098924	84107176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84098955_84099499_84100716_84103682_84103886_84105194
transcript_30743.known	chr12	+	3622	1	FSM	ENSMUSG00000043487.5	ENSMUST00000222921.2	3622	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGGAAAAAAGAATGAGGG	NA	False	NA	NA	False	NA	NA	NA	84147605	84151227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84147600_84151200
transcript_30744.known	chr12	+	5727	8	FSM	ENSMUSG00000042523.13	ENSMUST00000123491.8	5727	8	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	4.44007721940573	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCCTTTGGTTACTGTA	9912	False	NA	NA	False	AATAAA	-24	NA	84161139	84190291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84161174_84168056_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127
transcript_30746.known	chr12	-	2359	1	FSM	ENSMUSG00000054383.3	ENSMUST00000061425.3	2359	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCCTGACACGTATAAA	NA	False	NA	NA	False	AATAAA	-17	NA	84195263	84192904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84192900_84195300
transcript_30747.known	chr12	-	7156	13	FSM	ENSMUSG00000042507.16	ENSMUST00000110294.2	7156	13	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_9	16.3681601491025	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAATACACTAAAGAGAATC	NA	False	NA	NA	False	TATAAA	-8	NA	84240789	84196051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84199336_84199608_84199806_84201668_84201882_84203200_84203351_84205028_84205118_84205749_84205826_84206423_84206528_84206648_84206792_84207252_84207320_84209029_84209376_84218233_84218534_84219527_84221198_84240272
transcript_30748.known	chr12	-	3565	13	FSM	ENSMUSG00000042507.16	ENSMUST00000220974.2	3565	13	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_12	22.3288241716596	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCGCACATCAGCAGGC	NA	False	NA	NA	False	NA	NA	NA	84265655	84199232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84199336_84199608_84199806_84201668_84201882_84203200_84203351_84205028_84205118_84205749_84205826_84206423_84206528_84206648_84206792_84207252_84207320_84209029_84209376_84218233_84218534_84219527_84221198_84265548
transcript_30753.known	chr12	-	3271	1	FSM	ENSMUSG00000113776.2	ENSMUST00000220651.2	3271	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAGAAAAGAAAAGA	1899	False	NA	NA	False	NA	NA	NA	84234580	84231309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84231300_84234600
transcript_30766.known	chr12	+	2597	12	FSM	ENSMUSG00000042472.12	ENSMUST00000045931.12	2597	12	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_3	18.7929123266993	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	1583	False	NA	11	True	AATAAA	-16	NA	84363625	84390497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
transcript_30773.known	chr12	+	2284	12	FSM	ENSMUSG00000042472.12	ENSMUST00000222606.2	2284	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.2357590123466	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACCTCTTTGGCTCTTGT	1861	False	NA	8	True	AATAAA	-13	NA	84363903	84390494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372376_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
transcript_30779.nic	chr12	+	2388	12	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	58.2940678552067	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	1827	False	NA	11	True	AATAAA	-16	NA	84363869	84390497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_84363984_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
transcript_30781.known	chr12	+	1386	11	FSM	ENSMUSG00000072946.13	ENSMUST00000123693.2	1386	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	94.1679881913169	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCTTGATTCTAGTGT	NA	False	NA	28	True	TTTAAA	-19	NA	84332186	84360876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84343001_84343131_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
transcript_30794.known	chr12	+	3168	10	FSM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	23.1948270094864	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATGACCACTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	84332005	84362606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
transcript_30797.known	chr12	+	2073	10	FSM	ENSMUSG00000072946.13	ENSMUST00000146377.8	2073	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	74.1401742114137	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGGTGAGAAGCAGTTAA	NA	False	NA	NA	False	AATAAA	-14	NA	84332179	84361628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84332308_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
transcript_30799.nic	chr12	+	2037	10	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	65.7317782101372	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	1827	False	NA	11	True	AATAAA	-16	NA	84363869	84390497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_84363949_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
transcript_30801.nic	chr12	+	1200	9	ISM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	110	4836	-23	1043	5prime_fragment	FALSE	canonical	3	204	junction_5	23.3492505233037	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGAGTGGGTTTTCTT	NA	False	NA	13	True	AATAAA	-25	NA	84332115	84357770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692
transcript_30807.known	chr12	+	1286	10	FSM	ENSMUSG00000072946.13	ENSMUST00000135001.8	1286	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	79.8639274865708	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCTTGATTCTAGTGT	NA	False	NA	28	True	TTTAAA	-19	NA	84332173	84360876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357676_84357733_84360710
transcript_30808.known	chr12	+	1569	9	FSM	ENSMUSG00000042472.12	ENSMUST00000220931.2	1569	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	68.4233147399335	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGTTGGTTTTTGTT	1858	False	NA	NA	False	AATAAA	-14	NA	84363900	84382212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84381841
transcript_30809.known	chr12	+	656	4	FSM	ENSMUSG00000072946.13	ENSMUST00000128158.8	656	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	9.0921211313239	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGTCTTTTTTTACTT	NA	False	NA	NA	False	TATAAA	-45	NA	84332154	84345140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784
transcript_30812.known	chr12	+	1583	12	FSM	ENSMUSG00000021235.14	ENSMUST00000152913.8	1583	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	67.4165538687435	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	13	True	AATAAA	-13	NA	84408803	84420566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418177_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_30813.known	chr12	+	1602	12	FSM	ENSMUSG00000021235.14	ENSMUST00000021661.13	1602	12	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_6	16.3656564409681	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	False	NA	17	True	AATAAA	-17	NA	84408741	84420570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_30818.known	chr12	+	2056	11	FSM	ENSMUSG00000021235.14	ENSMUST00000150391.8	2056	11	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_5	17.0188131196038	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGTGTCTCTTTTCC	NA	False	NA	9	True	AATAAA	-9	NA	84408816	84420562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_30819.nic	chr12	+	1893	11	NIC	ENSMUSG00000021235.14	novel	1776	13	NA	NA	-5	0	intron_retention	FALSE	canonical	3	20	junction_4	64.7216347135948	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	13	True	AATAAA	-13	NA	84408798	84420566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_84409012_84413658_84413794_84414916_84415484_84417029_84417129_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_30830.known	chr12	-	3000	9	FSM	ENSMUSG00000021234.10	ENSMUST00000065536.9	3000	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	4.82020487116471	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGAGATATTTTTTTTT	405	False	NA	NA	False	AATAAA	-29	NA	84408607	84392082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84393184_84393560_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697_84403252_84404301_84404625_84408465
transcript_30841.known	chr12	-	4972	16	FSM	ENSMUSG00000021236.17	ENSMUST00000110272.9	4972	16	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	4.47014789713072	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTCCTTTGGGTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	84455803	84420648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84446113_84446187_84452179_84452250_84455743
transcript_30847.known	chr12	-	4881	15	FSM	ENSMUSG00000021236.17	ENSMUST00000120942.8	4881	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_13	11.8983792413685	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATAGTTTTCCTTTGGGTT	NA	False	NA	NA	False	AATAAA	-16	NA	84455788	84420651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84452179_84452250_84455743
transcript_3085.nic	chr1	+	2910	21	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	-265	8429	-33	-2027	5prime_fragment	FALSE	canonical	3	1352	junction_6	87.9451391493583	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAAGGTATGTTCTTTGG	NA	False	NA	NA	False	AAAAAG	-5	NA	85992075	86058444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358
transcript_30850.known	chr12	-	4931	15	FSM	ENSMUSG00000021236.17	ENSMUST00000021662.12	4931	15	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_8	4.52656557650139	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTAGCTGTCACTATTT	NA	False	NA	NA	False	AATAAA	-37	NA	84452250	84420630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84446113_84446187_84452179
transcript_30851.known	chr12	-	4858	14	FSM	ENSMUSG00000021236.17	ENSMUST00000072061.12	4858	14	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_13	12.3441766928723	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTAGCTGTCACTATTT	NA	False	NA	NA	False	AATAAA	-37	NA	84452250	84420630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84452179
transcript_30855.known	chr12	-	3399	12	FSM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	0	0	0	0	multi-exon	FALSE	canonical	2	131	junction_11	16.2917613413438	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTTCCTTCTTTTG	NA	False	NA	NA	False	AATAAA	-33	NA	84497777	84477490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
transcript_30858.known	chr12	-	2947	6	FSM	ENSMUSG00000021238.12	ENSMUST00000222062.2	2947	6	0	0	0	0	multi-exon	FALSE	canonical	2	131	junction_5	23.4742412017939	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAGAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84497740	84484263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84490563_84497662
transcript_30860.known	chr12	+	1383	1	FSM	ENSMUSG00000098134.2	ENSMUST00000183146.2	1383	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCTGGTGTGATCTTTC	NA	False	NA	10	True	AATAAA	-19	NA	84463969	84465352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84464000_84465400
transcript_30862.nnic	chr12	+	2144	6	NNC	ENSMUSG00000085793.4	novel	2270	6	NA	NA	75	-5	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	52.6399088145107	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGGAGGCCCAGGTTTT	NA	False	NA	0	True	AATAAA	-11	NA	84498270	84578342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509181_84576463
transcript_30863.known	chr12	+	2270	6	FSM	ENSMUSG00000085793.4	ENSMUST00000137170.4	2270	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	15.7810012356631	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCCAGGTTTTCCTTG	NA	False	NA	5	True	AATAAA	-16	NA	84498195	84578347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84576463
transcript_30864.known	chr12	+	3249	5	FSM	ENSMUSG00000021239.13	ENSMUST00000169934.4	3249	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGGGCCCAGGACTTCT	NA	False	NA	NA	False	AATAAA	-20	NA	84616613	84642231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84617087_84618343_84618429_84623052_84623177_84638944_84639126_84639845
transcript_30867.known	chr12	-	2309	19	FSM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_18	37.2765772285566	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAAGAAAACTGGT	NA	False	NA	NA	False	NA	NA	NA	84664144	84649426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
transcript_30882.nnic	chr12	-	2302	17	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-77	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_16	51.6547659345195	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84664264	84649306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84664056
transcript_30886.nnic	chr12	-	2112	17	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_16	51.6547659345195	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAAGAAAACTGGT	NA	False	NA	NA	False	NA	NA	NA	84664194	84649426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84664056
transcript_30920.known	chr12	+	516	2	FSM	ENSMUSG00000071235.13	ENSMUST00000221915.2	516	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCGCTACTCCTTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	84687792	84695647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84687912_84695250
transcript_30922.known	chr12	-	3299	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	0	0	0	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATCCTGGATGCCTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	84819926	84801335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
transcript_30928.known	chr12	+	883	4	FSM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	133.217449641137	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCTTATCGTGTTTTC	NA	False	NA	12	True	TATAAA	-15	NA	84820024	84821859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84820146_84820348_84820452_84820566_84820683_84821316
transcript_30929.known	chr12	+	727	4	FSM	ENSMUSG00000021241.8	ENSMUST00000222982.2	727	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	90.0900783783776	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATTTGGAGTTAACCTC	NA	False	NA	-69	True	NA	NA	NA	84820078	84821778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84820146_84820369_84820452_84820566_84820683_84821316
transcript_30931.known	chr12	+	485	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222022.2	485	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	92.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTAACTCTTGGCCGAA	NA	False	NA	NA	False	NA	NA	NA	84820098	84821651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84820146_84820348_84820452_84821316
transcript_30934.known	chr12	+	374	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222449.2	374	3	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	24	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACCACTGCACCAGTG	NA	False	NA	NA	False	NA	NA	NA	84820051	84821514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84820146_84820369_84820452_84821316
transcript_30935.known	chr12	+	843	2	FSM	ENSMUSG00000021241.8	ENSMUST00000223089.2	843	2	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGGACTAGTTTCAGTC	NA	False	NA	NA	False	AAGAAA	-2	NA	84820064	84821110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84820146_84820348
transcript_30936.known	chr12	+	1588	2	FSM	ENSMUSG00000021241.8	ENSMUST00000222166.2	1588	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820050	84821862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_84820146_84820369
transcript_30939.known	chr12	-	5446	20	FSM	ENSMUSG00000042350.14	ENSMUST00000043169.14	5446	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	22.9818668733885	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCTAAATGAGTGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	85017674	84964923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988504_84988732_84990105_84990167_84997826_84998156_85017402
transcript_30944.known	chr12	-	5262	19	FSM	ENSMUSG00000042350.14	ENSMUST00000163231.8	5262	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_18	31.0521763218134	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTAAATGAGTGTTTGAG	NA	False	NA	NA	False	AATAAA	-18	NA	85017598	84964921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988504_84988732_84990105_84990167_84997826_84998156_85017402
transcript_30947.known	chr12	+	749	8	FSM	ENSMUSG00000021243.15	ENSMUST00000021669.15	749	8	0	0	0	0	multi-exon	FALSE	canonical	3	1900	junction_1	151.77601649692	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTGTCTCAATTCTTA	4629	False	NA	23	True	ATTAAA	-25	NA	85017670	85030077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
transcript_30955.known	chr12	+	731	8	FSM	ENSMUSG00000021243.15	ENSMUST00000171040.2	731	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	770.463443887734	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATGCTATGTTG	4713	False	NA	11	True	ATTAAA	-13	NA	85017754	85030065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85017818_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
transcript_30961.known	chr12	+	2764	15	FSM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_7	23.9123612470237	750	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCGGGATCTGTGCTC	NA	False	NA	20	True	ATTAAA	-20	NA	85157606	85180862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
transcript_30974.known	chr12	-	2881	11	FSM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	69.4942443659905	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTTTGCATCATTAATA	NA	False	NA	-2	True	AATAAA	-17	NA	85198038	85182022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117_85187251_85187602_85187651_85193636_85193730_85194519_85194645_85196397_85196683_85197936
transcript_30997.known	chr12	+	1605	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGAAAGGGCCCCAAAC	NA	False	NA	NA	False	AATAAA	-21	NA	85266254	85273402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
transcript_31.known	ERCC-00084	+	978	1	FSM	ERCC-00084A	DQ883682	978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00084_+_0_1000
transcript_31000.known	chr12	+	957	7	FSM	ENSMUSG00000004788.12	ENSMUST00000136495.3	957	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	128.430266422418	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTCTGACACGGCCTGC	NA	False	NA	NA	False	NA	NA	NA	85266286	85272924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85271328_85271396_85272776
transcript_31006.known	chr12	+	587	2	FSM	ENSMUSG00000004788.12	ENSMUST00000130760.2	587	2	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGTTCGTTTATTGTTC	NA	False	NA	31	True	AATAAA	-16	NA	85271299	85273267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85271396_85272776
transcript_31007.known	chr12	-	4699	13	FSM	ENSMUSG00000021245.16	ENSMUST00000220854.2	4699	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_11	18.8126730335342	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGGTGAGTTGGCTTAT	NA	False	NA	NA	False	GATAAA	-15	NA	85317373	85282153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85309540_85309637_85312925_85316249_85317312
transcript_31009.known	chr12	-	5463	12	FSM	ENSMUSG00000021245.16	ENSMUST00000019378.8	5463	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	14.4554030620371	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTTGTTTTTGAAAATG	NA	False	NA	NA	False	AATAAA	-15	NA	85317373	85281293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85312925_85316249_85317312
transcript_31014.nic	chr12	-	2944	2	ISM	ENSMUSG00000021245.16	ENSMUST00000220854.2	4699	13	-53	31265	-53	-31265	5prime_fragment	FALSE	canonical	3	64	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAAAATAGAGAGTGA	NA	False	NA	NA	False	ATTAAA	-8	NA	85317426	85313418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_85316249_85317312
transcript_31018.known	chr12	+	4482	3	FSM	ENSMUSG00000045064.6	ENSMUST00000059341.5	4482	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTCTCTTGTGTCATTT	NA	False	NA	NA	False	AAAACA	-19	NA	85335364	85346132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85335560_85336325_85337656_85343175
transcript_31020.known	chr12	-	648	3	FSM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_2	28.5	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCTTCCCCCCCTCCCT	4291	False	NA	0	True	AATAAA	-24	NA	85327209	85319171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_85319602_85326764_85326857_85327083
transcript_31022.known	chr12	-	448	3	FSM	ENSMUSG00000008822.16	ENSMUST00000065913.8	448	3	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_1	185.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCCTTTGGCGGCTGCC	4308	False	NA	NA	False	NA	NA	NA	85327192	85325666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_85325914_85326764_85326857_85327083
transcript_31024.known	chr12	-	5386	22	FSM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_16	12.716336556552	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGGGCTGTGTTTGAGTA	7957	False	NA	-3	True	AATAAA	-15	NA	85386136	85346287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_85348701_85350240_85350448_85352236_85352399_85352910_85353141_85354703_85354764_85355592_85355764_85357160_85357323_85358111_85358221_85359719_85359876_85360955_85361003_85361175_85361377_85362353_85362499_85367487_85367681_85368802_85368854_85372081_85372147_85374162_85374274_85376617_85376750_85379274_85379381_85380759_85380831_85381371_85381428_85383081_85383260_85385776
transcript_31027.known	chr12	-	1482	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	0	0	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCTTGTGTATGTGT	8464	False	NA	-5	True	ATTAAA	-20	NA	85421621	85389561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
transcript_31033.known	chr12	-	2361	1	FSM	ENSMUSG00000021248.10	ENSMUST00000223375.2	2361	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	8621	False	NA	NA	False	AATGAA	-14	NA	85421464	85419103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_85419100_85421500
transcript_31034.known	chr12	+	2108	4	FSM	ENSMUSG00000021250.14	ENSMUST00000021674.7	2108	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.85861230093008	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTTCTTGCTCTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	85520663	85524047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85520955_85521708_85521961_85522365_85522474_85522590
transcript_31037.known	chr12	+	1645	4	FSM	ENSMUSG00000034271.17	ENSMUST00000177587.9	1645	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	88.8606899715629	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTCGAGTGGTGTCTG	6250	False	NA	34	True	AGTAAA	-20	NA	85645800	85686652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85646002_85654906_85655140_85678418_85678524_85685546
transcript_31039.known	chr12	+	1643	4	FSM	ENSMUSG00000034271.17	ENSMUST00000050687.14	1643	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	28.5228952870419	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTCGAGTGGTGTCTG	6639	False	NA	34	True	AGTAAA	-20	NA	85646189	85686652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85646389_85654906_85655140_85678418_85678524_85685546
transcript_31040.known	chr12	+	955	3	FSM	ENSMUSG00000034266.7	ENSMUST00000040536.6	955	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGAAAGCGGCTTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	85733442	85755861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85733748_85736041_85736147_85755316
transcript_31041.known	chr12	+	3435	10	FSM	ENSMUSG00000034258.5	ENSMUST00000040461.4	3435	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	3.8522079607466	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTCATCATTTAGTG	NA	False	NA	NA	False	AATAAA	-14	NA	85793312	85860359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85794364_85829730_85829873_85832861_85833003_85842948_85843017_85845271_85845376_85849908_85850020_85851141_85851248_85851369_85851482_85851969_85852026_85858815
transcript_31047.known	chr12	-	1169	5	FSM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_4	65.9104506129339	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871296	85862221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244
transcript_31060.known	chr12	+	5081	34	FSM	ENSMUSG00000012609.20	ENSMUST00000040179.14	5081	34	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_33	8.97020883060403	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTTTTTTTTCTATT	NA	False	NA	6	True	AATAAA	-16	NA	85871483	86100534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85923264_85923367_85925160_85925253_85926141_85926250_85935932_85936015_85937794_85937857_85938889_85938985_85945766_85945881_85946166_85946259_85955566_85955630_85959325_85959365_85964448_85964607_85965704_85966012_85969731_85969853_85972413_85972561_85973575_85973680_85976637_85976766_85979498_85979583_85980055_85980449_85986099_85986285_86003339_86003495_86042774_86042971_86059421_86059637_86067294_86067378_86070993_86071117_86099916
transcript_31063.known	chr12	+	4147	33	FSM	ENSMUSG00000012609.20	ENSMUST00000040273.14	4147	33	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_32	9.07864940395872	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTTGACGGAGGCTAAGC	NA	False	NA	NA	False	NA	NA	NA	85871742	86099982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85923264_85923367_85925160_85925253_85926141_85926250_85935932_85936015_85937794_85937857_85938889_85938985_85945766_85945881_85946166_85946259_85955566_85955630_85959325_85959365_85964448_85964607_85965704_85966012_85969731_85969853_85972413_85972561_85973575_85973680_85976637_85976766_85979498_85979583_85980055_85980449_85986099_85986285_86003339_86003495_86042774_86042971_86059421_86059637_86067294_86067378_86099916
transcript_31077.nic	chr12	+	2814	23	ISM	ENSMUSG00000012609.20	ENSMUST00000040273.14	4147	33	-276	127422	-14	-4153	5prime_fragment	TRUE	canonical	3	27	junction_8	6.98951398776224	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTCAATAGCCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	85871466	85972560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85923264_85923367_85925160_85925253_85926141_85926250_85935932_85936015_85937794_85937857_85938889_85938985_85945766_85945881_85946166_85946259_85955566_85955630_85959325_85959365_85964448_85964607_85965704_85966012_85969731_85969853_85972413
transcript_31085.known	chr12	+	2165	5	FSM	ENSMUSG00000012609.20	ENSMUST00000124701.8	2165	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	17.6210101867061	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTTAATATGGTACATT	NA	False	NA	NA	False	NA	NA	NA	85871794	85892456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85890719
transcript_31091.known	chr12	+	783	9	FSM	ENSMUSG00000007867.10	ENSMUST00000222821.2	783	9	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_5	10.7637992827812	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86129360	86209233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_86129415_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
transcript_31095.nic	chr12	+	3036	2	ISM	ENSMUSG00000097543.2	ENSMUST00000181667.2	3160	5	-18	22181	-18	-22181	intron_retention	FALSE	canonical	3	16	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAGAAAAAGAAATCA	NA	False	NA	NA	False	NA	NA	NA	86216096	86219695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_86216220_86216782
transcript_31098.known	chr12	+	4355	10	FSM	ENSMUSG00000021254.10	ENSMUST00000221368.2	4355	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	9.46077020329245	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCTTATGATTGAGGTC	NA	False	NA	3	True	AATAAA	-14	NA	86288631	86338558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86328222_86328318_86335573
transcript_31105.known	chr12	+	3829	9	FSM	ENSMUSG00000021254.10	ENSMUST00000071106.6	3829	9	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	8.71421252896669	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTTGATATATCCT	NA	False	NA	NA	False	AATGAA	-23	NA	86288648	86338144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86335573
transcript_31113.nic	chr12	+	2201	6	ISM	ENSMUSG00000021254.10	ENSMUST00000071106.6	3829	9	-22	25074	-5	2957	5prime_fragment	FALSE	canonical	3	56	junction_1	5.62138772902208	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTTTGTTTTAAATAGT	NA	False	NA	NA	False	NA	NA	NA	86288626	86313070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955
transcript_31119.known	chr12	+	1344	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCCAGCACATGGACGGA	NA	False	NA	NA	False	NA	NA	NA	86516890	86565839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
transcript_31121.nnic	chr12	+	3688	6	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	979	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	240.979999170056	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCGTTCATGCGTTGTC	NA	False	NA	16	True	AATAAA	-16	NA	86517869	86568399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_86518093_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
transcript_31131.known	chr12	+	2599	7	FSM	ENSMUSG00000021256.6	ENSMUST00000021681.4	2599	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.687184270936277	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTAGTGTTTTATTTGGAG	NA	False	NA	NA	False	NA	NA	NA	86725473	86738865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_86727101_86732157_86732247_86733739_86733797_86734985_86735061_86735675_86736058_86737631_86737745_86738609
transcript_31133.known	chr12	-	3850	10	FSM	ENSMUSG00000021257.15	ENSMUST00000021682.9	3850	10	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	10.9341463112378	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTTAGCCTTGTTATTG	NA	False	NA	0	True	AATAAA	-19	NA	86773234	86747275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488_86764616_86767003_86767438_86768084_86768155_86768614_86768842_86769618_86770195_86773103
transcript_3114.known	chr1	+	2582	2	FSM	ENSMUSG00000079445.4	ENSMUST00000113306.4	2582	2	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	0	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGCTGCTTCCTTGGTCTT	NA	False	NA	36	True	AATAAA	-27	NA	86230955	86235027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86231277_86232766
transcript_31141.nnic	chr12	-	4126	2	Genic_Genomic	ENSMUSG00000034168.8	novel	4098	1	NA	NA	-98	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTCTGCCCTGAGTCAG	NA	False	NA	-18	True	AATAAA	-12	NA	86931670	86927478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr12_-_86930859_86930924
transcript_31143.known	chr12	-	4098	1	FSM	ENSMUSG00000034168.8	ENSMUST00000038422.8	4098	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGCCCTGAGTCAGCAAA	NA	False	NA	-14	True	AATAAA	-16	NA	86931572	86927474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_86927500_86931600
transcript_31144.known	chr12	+	573	5	FSM	ENSMUSG00000034157.13	ENSMUST00000190588.2	573	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	47.8767950055139	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCTCATGCCAGACTG	NA	False	NA	NA	False	NA	NA	NA	86994263	87008657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_86994274_86999517_86999706_87006501_87006603_87007045_87007216_87008553
transcript_31148.known	chr12	+	1454	4	FSM	ENSMUSG00000034157.13	ENSMUST00000189246.7	1454	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	43.0219582177391	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGAAACATTTTCCAGTT	NA	False	NA	NA	False	NA	NA	NA	86993816	87009441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_86994025_86999517_86999706_87007045_87007216_87008553
transcript_31150.known	chr12	+	4098	4	FSM	ENSMUSG00000034157.13	ENSMUST00000187814.7	4098	4	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	3.2659863237109	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGGTCTATTTGCTTTG	NA	False	NA	7	True	AATAAA	-19	NA	86994116	87012136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_86994274_86999517_86999706_87007045_87007216_87008553
transcript_31155.known	chr12	+	3327	25	FSM	ENSMUSG00000034145.15	ENSMUST00000110187.8	3327	25	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	2.1586389744981	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAACCATGCTGAATC	NA	False	NA	NA	False	ATTAAA	-22	NA	87073337	87136807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87073365_87085215_87085365_87099599_87099663_87103161_87103372_87103896_87103977_87104404_87104487_87108294_87108333_87112246_87112390_87113669_87113719_87115896_87116006_87118041_87118116_87118680_87118762_87118871_87118996_87119631_87119766_87121851_87121975_87122384_87122539_87123172_87123280_87123965_87124053_87124666_87124733_87128571_87128735_87128972_87129079_87129463_87129632_87131235_87131346_87133128_87133201_87135999
transcript_31156.known	chr12	+	3455	24	FSM	ENSMUSG00000034145.15	ENSMUST00000146292.8	3455	24	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_6	2.14678728619626	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATGCTGAATCCTTGC	NA	False	NA	NA	False	ATTAAA	-27	NA	87073065	87136812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87073365_87099599_87099663_87103161_87103372_87103896_87103977_87104404_87104487_87108294_87108333_87112246_87112390_87113669_87113719_87115896_87116006_87118041_87118116_87118680_87118762_87118871_87118996_87119631_87119766_87121851_87121975_87122384_87122539_87123172_87123280_87123965_87124053_87124666_87124733_87128571_87128735_87128972_87129079_87129463_87129632_87131235_87131346_87133128_87133201_87135999
transcript_31157.known	chr12	-	5064	21	FSM	ENSMUSG00000034126.6	ENSMUST00000037788.6	5064	21	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_16	10.2834819006016	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTCTTGTGCTTGATT	5649	False	NA	NA	False	AATAAA	-22	NA	87194676	87153634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87156068_87156777_87156893_87157075_87157217_87158110_87158217_87158297_87158358_87158652_87158725_87163304_87163382_87164158_87164251_87164712_87164865_87166345_87166425_87169615_87169686_87171585_87171653_87174075_87174186_87175726_87175810_87177062_87177170_87178445_87178606_87180133_87180243_87182268_87182378_87184776_87184882_87186417_87186503_87193944
transcript_31160.known	chr12	-	2774	20	FSM	ENSMUSG00000034126.6	ENSMUST00000222634.2	2774	20	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_15	10.3591997466301	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCACATTGGATTTGG	6077	False	NA	13	True	CATAAA	-42	NA	87194248	87155577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87156068_87156777_87156893_87157075_87157217_87158110_87158358_87158652_87158725_87163304_87163382_87164158_87164251_87164712_87164865_87166345_87166425_87169615_87169686_87171585_87171653_87174075_87174186_87175726_87175810_87177062_87177170_87178445_87178606_87180133_87180243_87182268_87182378_87184776_87184882_87186417_87186503_87193944
transcript_31163.nnic	chr12	+	1985	10	NNC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	152.42338694862	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	13	True	NA	NA	NA	87193898	87211497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_87194283_87194546_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
transcript_31167.known	chr12	+	1656	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	13	True	NA	NA	NA	87194491	87211497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
transcript_31168.nic	chr12	+	2966	8	NIC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	-11	0	intron_retention	FALSE	canonical	3	476	junction_5	37.1054756947086	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	13	True	NA	NA	NA	87194480	87211497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87208328_87208813_87208867_87209761_87209812_87210477
transcript_31171.known	chr12	+	971	8	FSM	ENSMUSG00000021033.12	ENSMUST00000220574.2	971	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	172.56918163154	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCCTATATGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	87194545	87210934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87194619_87204666_87204719_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
transcript_31173.known	chr12	+	3035	1	FSM	ENSMUSG00000021033.12	ENSMUST00000220468.2	3035	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CTAAAAAAAAAAAAAAAAAA	123	False	NA	NA	False	NA	NA	NA	87200657	87203692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87200700_87203700
transcript_31184.known	chr12	-	2524	20	FSM	ENSMUSG00000021038.18	ENSMUST00000072744.15	2524	20	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	8.24352343784865	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTCCCCATCTGGTTA	NA	False	NA	-10	True	AATAAA	-21	NA	87313030	87285646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
transcript_31189.known	chr12	-	2418	19	FSM	ENSMUSG00000021038.18	ENSMUST00000179379.9	2418	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	23.717212585789	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTCTTCCCCATCTGGT	NA	False	NA	-12	True	AATAAA	-19	NA	87312983	87285648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
transcript_31196.known	chr12	+	1377	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	0	0	0	0	multi-exon	TRUE	canonical	3	2699	junction_7	143.152890295656	1500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTTCTTACAATCTAT	NA	False	NA	-2	True	AGTAAA	-16	NA	87313471	87320753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
transcript_31215.known	chr12	+	2252	1	FSM	ENSMUSG00000021037.8	ENSMUST00000222728.2	2252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87313483	87315735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87313500_87315700
transcript_31218.nnic	chr12	-	3020	7	NNC	ENSMUSG00000050671.13	novel	2526	6	NA	NA	-412	-9	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	39.8444893722248	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACATACAGTTTGATAAAG	7257	False	NA	-8	True	AATAAA	-12	NA	87346891	87325420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_87326977_87328088_87328180_87329073_87329158_87329419_87329561_87331799_87332161_87333668_87333912_87346347
transcript_31223.nnic	chr12	-	2521	6	NNC	ENSMUSG00000050671.13	novel	2526	6	NA	NA	-136	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	34.7988505557296	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATAAAGGATTTGGGG	7533	False	NA	1	True	AATAAA	-21	NA	87346615	87325411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799_87332020_87333668_87333912_87346347
transcript_31225.known	chr12	-	2526	6	FSM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	6.95701085237043	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATAAAGGATTTGGGG	7669	False	NA	1	True	AATAAA	-21	NA	87346479	87325411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799_87332161_87333668_87333912_87346347
transcript_31226.nic	chr12	-	2763	6	NIC	ENSMUSG00000050671.13	novel	2526	6	NA	NA	-127	0	combination_of_known_junctions	TRUE	canonical	3	13	junction_2	30.7310917476096	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATAAAGGATTTGGGG	7542	False	NA	1	True	AATAAA	-21	NA	87346606	87325411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_87326977_87329073_87329268_87329419_87329561_87331799_87332161_87333668_87333912_87346347
transcript_31231.nic	chr12	-	2862	5	NIC	ENSMUSG00000050671.13	novel	2526	6	NA	NA	-74	0	intron_retention	FALSE	canonical	3	77	junction_1	7.44983221287567	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATAAAGGATTTGGGG	7595	False	NA	1	True	AATAAA	-21	NA	87346553	87325411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_87326977_87329073_87329561_87331799_87332161_87333668_87333912_87346347
transcript_31235.nic	chr12	-	1050	2	ISM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	-134	7716	-134	-3934	5prime_fragment	FALSE	canonical	3	97	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGCTTGGTTTGTTT	7535	False	NA	NA	False	AAGAAA	-43	NA	87346613	87333127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_87333912_87346347
transcript_31237.known	chr12	-	6710	12	FSM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.0427457550466	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCCTTTATTCATTCA	8696	False	NA	NA	False	AATAAA	-16	NA	87435129	87351831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
transcript_31256.known	chr12	-	2154	8	FSM	ENSMUSG00000079036.11	ENSMUST00000161712.8	2154	8	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	99.4164606745846	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490606	87474849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
transcript_3126.known	chr1	-	8202	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	0	0	0	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATCTGGGTGTTTGGTTT	NA	False	NA	NA	False	AGTAAA	-7	NA	86287122	86272440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
transcript_31262.known	chr12	-	2019	7	FSM	ENSMUSG00000079036.11	ENSMUST00000160113.8	2019	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	112.096312755297	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490596	87474846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488412_87488551_87490411
transcript_31268.known	chr12	-	1883	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	71.1983145867934	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490598	87474846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
transcript_31269.known	chr12	-	3857	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162961.8	3857	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	59.8431282604778	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	NA	False	NA	-2	True	ATTAAA	-15	NA	87490609	87472938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
transcript_31278.known	chr12	+	335	4	FSM	ENSMUSG00000021040.16	ENSMUST00000077462.8	335	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	1742.05708542771	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGAGACTTTTTCTACA	NA	False	NA	16	True	AATAAA	-3	NA	87490705	87496674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87490797_87494333_87494369_87496062_87496171_87496573
transcript_31279.known	chr12	+	362	4	FSM	ENSMUSG00000021040.16	ENSMUST00000160880.2	362	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1761.37452639188	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTTTATTTGAAATGAGG	NA	False	NA	36	True	AATAAA	-23	NA	87490715	87496694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87490797_87494333_87494393_87496069_87496171_87496573
transcript_31285.known	chr12	-	1335	1	FSM	ENSMUSG00000079036.11	ENSMUST00000091090.5	1335	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87490787	87489452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87489500_87490800
transcript_31286.known	chr12	-	5083	1	FSM	ENSMUSG00000021039.10	ENSMUST00000222579.2	5083	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGACAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-39	NA	87500927	87495844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87495800_87500900
transcript_31287.known	chr12	-	479	1	FSM	ENSMUSG00000021039.10	ENSMUST00000223119.2	479	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	87519039	87518560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87518600_87519000
transcript_31288.known	chr12	-	2232	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTTATTTAGTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	87519044	87496679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
transcript_31290.known	chr12	+	1873	2	FSM	ENSMUSG00000079034.3	ENSMUST00000110152.3	1873	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGCAGTCTGATGGTTT	NA	False	NA	NA	False	AATAAA	-31	NA	87561085	87565036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_87561276_87563353
transcript_31292.known	chr12	-	1840	2	FSM	ENSMUSG00000079029.3	ENSMUST00000101168.4	1840	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAAGAAAAAGATCAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88241270	88237409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_88239059_88241079
transcript_31293.known	chr12	-	1856	2	FSM	ENSMUSG00000093847.3	ENSMUST00000218054.3	1856	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGCAGTCTGATGGTCT	NA	False	NA	NA	False	AATAAA	-31	NA	88290796	88286891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_88288562_88290610
transcript_31297.nnic	chr12	+	2163	11	NNC	ENSMUSG00000021044.16	novel	2158	11	NA	NA	-27	0	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_2	23.9257183800194	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	9	True	AATAAA	-22	NA	88327296	88428488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_88327366_88335104_88335230_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_31298.known	chr12	+	2158	11	FSM	ENSMUSG00000021044.16	ENSMUST00000101165.9	2158	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	14.3544418212622	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGACTGTTCCTTCTCAA	NA	False	NA	10	True	AATAAA	-23	NA	88327323	88428489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_88327366_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_31302.known	chr12	+	2253	11	FSM	ENSMUSG00000021044.16	ENSMUST00000222695.2	2253	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	17.7822945651004	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACTGTTCCTTCTCAAT	NA	False	NA	11	True	AATAAA	-24	NA	88327417	88428490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_88327554_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_31305.known	chr12	+	2199	11	FSM	ENSMUSG00000021044.16	ENSMUST00000166940.3	2199	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	20.9752234791432	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	9	True	AATAAA	-22	NA	88327658	88428488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_88327743_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_31315.known	chr12	-	4807	26	FSM	ENSMUSG00000061533.17	ENSMUST00000141429.8	4807	26	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_10	9.02405673741029	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAATGATGCGTCTGTT	6152	False	NA	-5	True	AATAAA	-19	NA	91351183	90965265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989252_91029915_91029940_91050447_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91226759_91227411_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336835_91336971_91348421_91348563_91351007
transcript_31321.nic	chr12	-	2534	16	ISM	ENSMUSG00000061533.17	ENSMUST00000141429.8	4807	26	-35	261670	-35	29231	5prime_fragment	FALSE	canonical	3	46	junction_13	8.48685257717292	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCCACGGCTATCACACAG	6117	False	NA	NA	False	AAGAAA	-1	NA	91351218	91226935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_91227411_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336835_91336971_91348421_91348563_91351007
transcript_31326.nic	chr12	-	1293	11	ISM	ENSMUSG00000061533.17	ENSMUST00000141429.8	4807	26	-35	300554	-35	-9653	5prime_fragment	FALSE	canonical	3	46	junction_8	7.98999374217527	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATGAGGACGTAATAAAAA	6117	False	NA	NA	False	AAGAAA	-21	NA	91351218	91265819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336835_91336971_91348421_91348563_91351007
transcript_31327.known	chr12	-	6064	9	FSM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_7	74.7277349783867	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATTTTGCAGTTT	1245	False	NA	0	True	AATAAA	-23	NA	91556783	91522035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308
transcript_31335.nic	chr12	-	3508	7	NIC	ENSMUSG00000020961.16	novel	9896	7	NA	NA	-58	2259	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	11.1753697428268	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTTCTCTGGGCCTGCT	-4	True	NA	1	True	TATAAA	-20	NA	91745969	91606057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_91606580_91608494_91608698_91614005_91615845_91680700_91680899_91707244_91707521_91710379_91710653_91745772
transcript_31344.known	chr12	-	6300	21	FSM	ENSMUSG00000020964.15	ENSMUST00000021347.12	6300	21	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_17	38.6834589973544	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGGCGTGTGCCAC	NA	False	NA	-24	True	AATAAA	-18	NA	91815931	91772816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
transcript_31345.known	chr12	-	5544	21	FSM	ENSMUSG00000020964.15	ENSMUST00000167466.2	5544	21	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_17	69.9646339231472	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91815903	91773394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799978_91799997_91808411_91808629_91809999_91810038_91815732
transcript_31351.known	chr12	-	6150	21	FSM	ENSMUSG00000020964.15	ENSMUST00000178462.8	6150	21	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_17	115.231072198431	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGGCGTGTGCCAC	NA	False	NA	-24	True	AATAAA	-18	NA	91815931	91772816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91798540_91798559_91808411_91808629_91809999_91810038_91815732
transcript_31360.nic	chr12	-	2486	19	ISM	ENSMUSG00000020964.15	ENSMUST00000021347.12	6300	21	-37	7500	-37	1961	5prime_fragment	FALSE	canonical	3	285	junction_15	40.6007738781685	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACGTTTTCCTGATCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	91815968	91780316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
transcript_31364.known	chr12	-	1484	4	FSM	ENSMUSG00000020964.15	ENSMUST00000172246.8	1484	4	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	17.2819751957543	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91815913	91798948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_91799997_91808411_91808629_91809999_91810038_91815732
transcript_31365.known	chr12	+	3223	2	FSM	ENSMUSG00000047414.7	ENSMUST00000110117.2	3223	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATGTTGCTGAA	NA	False	NA	NA	False	TTTAAA	-4	NA	95662130	95747881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_95662753_95745280
transcript_31370.known	chr12	-	3832	17	FSM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	6.15648793956424	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGAATTTGCATTTG	NA	False	NA	NA	False	NA	NA	NA	98225718	98168552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98225393
transcript_31376.nic	chr12	-	2571	14	ISM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	14	9900	14	-4741	5prime_fragment	FALSE	canonical	3	25	junction_5	5.73992557113158	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAGACATATGCCAAAA	NA	False	NA	NA	False	AATAAA	-1	NA	98225704	98178452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98225393
transcript_31377.known	chr12	+	2193	1	FSM	ENSMUSG00000021007.15	ENSMUST00000222195.2	2193	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	98594425	98596618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_98594400_98596600
transcript_31378.known	chr12	+	2052	12	FSM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	12.115149999242	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	False	NA	17	True	NA	NA	NA	98594415	98636074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
transcript_31379.known	chr12	+	1913	11	FSM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	15.3766056072203	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98594455	98636071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_98594594_98598221_98598297_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
transcript_31380.known	chr12	+	938	2	FSM	ENSMUSG00000021007.15	ENSMUST00000130136.2	938	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGGTAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	98594448	98599014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_98594594_98598221
transcript_31381.known	chr12	-	5696	19	FSM	ENSMUSG00000021009.16	ENSMUST00000085116.4	5696	19	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_18	9.45636502606434	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCGTGTTCCTGTTGCA	NA	False	NA	0	True	ATTAAA	-15	NA	98700904	98643000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777_98649000_98649736_98649875_98654448_98655888_98659130_98659216_98659815_98659877_98665089_98665170_98666217_98666306_98670400_98670490_98671351_98671440_98675063_98675135_98675794_98675863_98677058_98677157_98681282_98681453_98699732_98700094_98700728
transcript_31382.known	chr12	-	5562	19	FSM	ENSMUSG00000021009.16	ENSMUST00000170188.8	5562	19	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	7.37467304150739	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGTGTTCCTGTTGCAA	NA	False	NA	1	True	ATTAAA	-16	NA	98703664	98642999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_98644938_98645534_98645696_98646215_98646451_98646619_98646749_98648777_98649000_98649736_98649875_98654448_98655888_98659130_98659216_98659815_98659877_98665089_98665170_98666217_98666306_98670400_98670490_98671351_98671440_98675063_98675135_98675794_98675863_98677058_98677157_98681282_98681453_98699732_98700094_98703623
transcript_31387.known	chr12	-	7595	44	FSM	ENSMUSG00000051166.11	ENSMUST00000223282.2	7595	44	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_15	10.6988876966176	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCATCAAGGAAGTTTTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	98867743	98755403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_98756646_98756871_98756973_98757535_98757690_98758282_98758387_98758774_98758938_98760372_98760546_98760689_98760879_98762765_98762881_98765049_98765208_98767161_98767371_98768542_98768717_98771725_98771747_98776777_98776877_98782193_98782324_98784078_98784158_98786119_98786129_98787858_98787874_98790892_98791020_98791637_98791840_98793592_98793770_98794965_98795055_98797118_98797251_98797330_98797484_98803501_98803644_98807809_98807938_98808930_98809043_98810212_98810416_98817640_98817742_98818866_98818961_98822182_98822289_98824977_98825165_98826217_98826337_98826718_98826826_98827403_98827572_98829355_98829569_98831512_98831770_98837025_98837164_98839262_98839465_98840765_98840902_98842385_98842572_98847069_98847139_98848234_98848334_98853240_98853401_98867090
transcript_31402.known	chr12	+	3514	17	FSM	ENSMUSG00000021012.17	ENSMUST00000110105.10	3514	17	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_12	209.53098667023	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGTGTTTAATAATGTGA	NA	False	NA	NA	False	AATAAA	-16	NA	98713247	98754012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98745366_98745527_98746306_98746540_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
transcript_31423.known	chr12	+	3146	15	FSM	ENSMUSG00000021012.17	ENSMUST00000110104.10	3146	15	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_10	269.986630432407	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGTGTTTAATAATGTGA	NA	False	NA	NA	False	AATAAA	-16	NA	98713222	98754012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
transcript_31431.known	chr12	+	3046	14	FSM	ENSMUSG00000021012.17	ENSMUST00000057000.17	3046	14	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_9	361.05984686441	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGTCTGTGTTTAATA	NA	False	NA	NA	False	AATAAA	-10	NA	98713241	98754006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
transcript_31448.known	chr12	+	2272	14	FSM	ENSMUSG00000021013.17	ENSMUST00000085109.10	2272	14	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	3.54347470962493	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACTTTTCACTTTTCA	NA	False	NA	NA	False	AATAAA	-10	NA	98886832	98949491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_98887043_98908476_98908598_98909561_98909626_98909720_98909881_98910083_98910174_98912827_98912873_98923539_98923626_98927660_98927749_98930755_98930867_98940900_98941041_98942235_98942411_98942685_98942809_98946060_98946145_98948716
transcript_3145.nic	chr1	-	1406	7	ISM	ENSMUSG00000026234.13	ENSMUST00000185676.7	3072	12	-119	4550	-83	2267	5prime_fragment	FALSE	canonical	3	5685	junction_6	279.846187912019	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAAAGGAAGAGATAGTAA	NA	False	NA	-8	True	ATTAAA	-10	NA	86287205	86282766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
transcript_31455.nic	chr12	-	3112	7	NIC	ENSMUSG00000033713.13	novel	2882	6	NA	NA	-33	131	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	38.9615194775563	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACAAAAACAAACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	99359364	99161221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_99163073_99175719_99175826_99185856_99185923_99257495_99257561_99307680_99307794_99354619_99355177_99359010
transcript_31456.nic	chr12	-	3256	7	NIC	ENSMUSG00000033713.13	novel	2611	6	NA	NA	-367	131	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	40.5890653036285	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACAAAAACAAACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	99530208	99161221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_99163073_99175719_99175826_99257495_99257561_99307680_99307794_99354619_99355177_99416283_99416369_99529729
transcript_31457.nic	chr12	-	2130	7	NIC	ENSMUSG00000033713.13	novel	2882	6	NA	NA	-33	466	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	38.9615194775563	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAAATTAACCATTGCTT	NA	False	NA	NA	False	AATACA	-25	NA	99359364	99162203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_99163073_99175719_99175826_99185856_99185923_99257495_99257561_99307680_99307794_99354619_99355177_99359010
transcript_31459.known	chr12	-	2882	6	FSM	ENSMUSG00000033713.13	ENSMUST00000177451.8	2882	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	12.3709336753537	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAGAAAAACAGAACAG	NA	False	NA	NA	False	AAAAAG	-33	NA	99359331	99161352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_99163073_99175719_99175826_99257495_99257561_99307680_99307794_99354619_99355177_99359010
transcript_31471.known	chr12	-	2068	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_2	7.87400787401181	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATATTTATGGTATGTA	NA	False	NA	-6	True	ATTAAA	-23	NA	99849701	99683790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
transcript_31476.known	chr12	-	3131	3	FSM	ENSMUSG00000021176.7	ENSMUST00000221801.2	3131	3	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTTGCCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	99849762	99841848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_99844662_99849020_99849117_99849540
transcript_31485.known	chr12	+	2036	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	45.8998910674089	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	19	True	ATTAAA	-19	NA	99850795	99921478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
transcript_31499.nic	chr12	+	1865	14	NIC	ENSMUSG00000021177.17	novel	3945	14	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_13	129.038226527357	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACTGTGAGACCTTTA	NA	False	NA	3	True	NA	NA	NA	99850734	99885563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99885326
transcript_31503.known	chr12	+	2019	15	FSM	ENSMUSG00000021177.17	ENSMUST00000021594.5	2019	15	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_14	30.3943469502243	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTACAGGCCTGG	NA	False	NA	14	True	ATTAAA	-14	NA	99857431	99921473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
transcript_31504.known	chr12	+	689	5	FSM	ENSMUSG00000021177.17	ENSMUST00000128739.2	689	5	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_4	38.0616276583122	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	19	True	ATTAAA	-19	NA	99880264	99921478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
transcript_31506.known	chr12	+	1591	11	FSM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	0	0	0	0	multi-exon	FALSE	canonical	3	1446	junction_1	298.758363899657	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGGAAGAGTTCATTTT	3973	False	NA	12	True	NA	NA	NA	100076412	100089664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
transcript_31516.nic	chr12	+	327	4	ISM	ENSMUSG00000021178.10	ENSMUST00000222374.2	551	6	0	911	0	-599	5prime_fragment	FALSE	canonical	3	1446	junction_1	478.846066659794	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGAGGTGAGTGGAGAAG	3973	False	NA	14	True	AAGAAA	-2	NA	100076412	100081214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096
transcript_31519.known	chr12	-	3718	14	FSM	ENSMUSG00000021179.9	ENSMUST00000021596.9	3718	14	0	0	0	0	multi-exon	TRUE	canonical	2	41	junction_5	13.3828469211889	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGTGCAGCTTCTTATT	8556	False	NA	-5	True	GATAAA	-15	NA	100125907	100091710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_100091991_100092459_100092532_100095553_100095693_100096616_100097543_100098409_100098797_100100615_100100792_100103916_100104038_100106263_100106398_100108151_100108558_100109997_100110449_100112128_100112288_100116075_100116310_100117469_100117594_100125798
transcript_31520.known	chr12	+	1984	3	FSM	ENSMUSG00000072884.11	ENSMUST00000146364.8	1984	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	100154226	100159799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_100154607_100155149_100155252_100158297
transcript_31522.known	chr12	+	4115	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	0	0	0	0	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	1990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTGAACTGTGTAGGT	9165	False	NA	27	True	AATAAA	-24	NA	100165693	100176073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
transcript_31535.known	chr12	+	582	3	FSM	ENSMUSG00000001175.17	ENSMUST00000153524.2	582	3	0	0	0	0	multi-exon	FALSE	canonical	3	3923	junction_2	23	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTTCTGCTTACTGAG	9259	False	NA	NA	False	NA	NA	NA	100165787	100170196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_100165976_100168651_100168683_100169833
transcript_31538.known	chr12	-	5642	17	FSM	ENSMUSG00000021180.10	ENSMUST00000222731.2	5642	17	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_6	9.17196816392207	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAACTCAAGTATTTTAT	NA	False	NA	-4	True	AATAAA	-19	NA	100691379	100514697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_100517943_100519259_100519424_100520532_100520693_100524707_100524900_100537087_100537259_100540689_100540784_100541381_100541516_100541893_100542020_100543980_100544143_100547554_100547706_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
transcript_31539.nic	chr12	-	2210	15	ISM	ENSMUSG00000021180.10	ENSMUST00000222731.2	5642	17	-62	5920	-62	0	5prime_fragment	FALSE	canonical	3	13	junction_4	9.29450133692178	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAGAAAATTAAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	100691441	100520617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_100520693_100524707_100524900_100537087_100537259_100540689_100540784_100541381_100541516_100541893_100542020_100543980_100544143_100547554_100547706_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
transcript_31542.nic	chr12	-	1224	8	NIC	ENSMUSG00000021180.10	novel	1039	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	9.9979589753844	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAACGTGTTTATAAAC	NA	False	NA	NA	False	NA	NA	NA	100691379	100560642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_100560824_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
transcript_31543.known	chr12	-	403	1	FSM	ENSMUSG00000113113.2	ENSMUST00000223227.2	403	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAATCTGTTATGCCATA	NA	False	NA	NA	False	AAAACA	-13	NA	100711194	100710791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_100710800_100711200
transcript_31544.known	chr12	+	3295	13	FSM	ENSMUSG00000021185.17	ENSMUST00000069782.11	3295	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	4.43471156521669	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATAGATGACT	NA	False	NA	NA	False	GATAAA	-19	NA	100745315	100838869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_100745570_100795857_100795985_100801443_100801595_100804758_100804958_100807629_100807781_100808901_100809025_100810988_100811190_100816371_100816633_100819472_100819573_100823179_100823329_100825791_100825912_100833362_100833515_100837562
transcript_31549.known	chr12	-	2900	3	FSM	ENSMUSG00000047415.13	ENSMUST00000110065.8	2900	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCAGAGTGTGTGCAGTC	NA	False	NA	NA	False	AATAAA	-16	NA	100874440	100842943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_100845672_100854242_100854332_100874357
transcript_31551.known	chr12	-	7542	30	FSM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	0	0	0	0	multi-exon	TRUE	canonical	3	67	junction_4	21.6322633049711	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCCCTGGTTTTCTTCA	NA	False	NA	-3	True	AATAAA	-17	NA	100995315	100877781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100889438_100889628_100895085_100895325_100896773_100896864_100898026_100898173_100899417_100899605_100901884_100902029_100904088_100904367_100905255_100905418_100906343_100906530_100907367_100907495_100908255_100908384_100911105_100912168_100913358_100913497_100914705_100914891_100919545_100919691_100920422_100920570_100932197_100932357_100932638_100932721_100934066_100934252_100934512_100934654_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
transcript_31555.nic	chr12	-	3168	17	ISM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	-34	29659	-34	-3136	5prime_fragment	FALSE	canonical	3	69	junction_5	6.07987201756748	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGTTTTTGGAGGCAC	NA	False	NA	NA	False	AAGAAA	-2	NA	100995349	100907440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_100907495_100908255_100908384_100911105_100912168_100913358_100913497_100914705_100914891_100919545_100919691_100920422_100920570_100932197_100932357_100932638_100932721_100934066_100934252_100934512_100934654_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
transcript_31560.nic	chr12	-	1744	13	ISM	ENSMUSG00000021182.17	ENSMUST00000085096.10	6313	30	-69	35751	4	-10405	5prime_fragment	FALSE	canonical	3	69	junction_1	6.22439198280086	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGTGACCTTCGGGGCCC	NA	False	NA	NA	False	NA	NA	NA	100995311	100914709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_100914891_100919545_100919691_100920422_100920570_100932197_100932357_100932638_100932721_100934066_100934252_100934512_100934654_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
transcript_31571.known	chr12	-	4083	15	FSM	ENSMUSG00000041846.16	ENSMUST00000163095.9	4083	15	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_8	127.060085416792	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAGCCTAACGTGCTGG	8777	False	NA	NA	False	ATTAAA	-14	NA	101049956	101006173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101015918_101016078_101017592_101017696_101017789_101017922_101019687_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895_101034952_101048987
transcript_31572.known	chr12	-	4516	15	FSM	ENSMUSG00000041846.16	ENSMUST00000048305.10	4516	15	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_8	78.1559142917253	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGTGGTACCTTATTAA	8811	False	NA	79	True	AATAAA	-13	NA	101049922	101005667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101015918_101016078_101017592_101017696_101017789_101017922_101019726_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895_101034952_101048987
transcript_3159.known	chr1	-	661	3	FSM	ENSMUSG00000026234.13	ENSMUST00000185785.2	661	3	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_2	2803.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAGCTAAGAAAAACATTAC	NA	False	NA	NA	False	AAAAAG	-13	NA	86286691	86285033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_86285175_86285828_86285946_86286288
transcript_31600.known	chr12	+	803	4	FSM	ENSMUSG00000097121.3	ENSMUST00000221044.2	803	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.39934634239519	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGTTTGGTTTAGTT	NA	False	NA	NA	False	AATAAA	-13	NA	101050000	101054438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_101050285_101050542_101050759_101052446_101052612_101054300
transcript_31601.known	chr12	-	3100	4	FSM	ENSMUSG00000041846.16	ENSMUST00000223161.2	3100	4	0	0	0	0	multi-exon	FALSE	canonical	3	536	junction_1	24.5673676969177	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8772	False	NA	NA	False	TATAAA	-13	NA	101049961	101023229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101025201_101031242_101031342_101034895_101034952_101048987
transcript_31603.known	chr12	-	3455	1	FSM	ENSMUSG00000041846.16	ENSMUST00000222302.2	3455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAGAAAGAAAAAAGGG	8811	False	NA	NA	False	AGTAAA	-12	NA	101049922	101046467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101046500_101049900
transcript_31604.known	chr12	-	5290	12	FSM	ENSMUSG00000021187.15	ENSMUST00000162735.8	5290	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.40522846460417	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTCTCTGTCTCATCT	NA	False	NA	NA	False	ATTAAA	-27	NA	101684782	101611701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101615465_101617250_101617451_101618997_101619113_101631811_101632004_101644772_101644890_101655218_101655320_101656035_101656112_101659373_101659466_101660764_101660933_101672641_101672873_101675682_101675796_101684660
transcript_31607.known	chr12	-	5829	11	FSM	ENSMUSG00000021186.10	ENSMUST00000021603.9	5829	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1.74355957741627	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACATGGCATGTAAAA	NA	False	NA	NA	False	AATAAA	-43	NA	101785314	101712823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101717163_101723514_101723711_101726959_101727087_101728060_101728184_101731414_101731535_101734651_101734769_101737503_101737627_101775974_101776230_101778412_101778465_101780800_101780856_101784992
transcript_31609.known	chr12	-	1876	11	FSM	ENSMUSG00000021188.15	ENSMUST00000177536.8	1876	11	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_10	4.77912125813941	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCAAGAAACTGAAAGAAGA	7565	False	NA	NA	False	GATAAA	-41	NA	101879382	101852478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101852536_101853066_101853280_101855963_101856051_101856836_101856878_101859689_101860053_101860520_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872073_101878948
transcript_31618.nic	chr12	-	1324	7	ISM	ENSMUSG00000021188.15	ENSMUST00000021605.14	9873	21	63	59626	-49	-3923	5prime_fragment	FALSE	canonical	3	11	junction_6	3.97562014729219	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGATACATAAAAGATTGTC	7484	False	NA	NA	False	AATAAA	-7	NA	101879463	101859927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_101860053_101860520_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872076_101878948
transcript_3162.nic	chr1	-	879	3	ISM	ENSMUSG00000026234.13	ENSMUST00000185676.7	3072	12	-144	6499	-108	318	5prime_fragment	FALSE	canonical	3	5685	junction_2	152	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGATGAGGAAGATGATGA	NA	False	NA	-22	True	NA	NA	NA	86287230	86284715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_86285175_86285828_86285946_86286927
transcript_31620.nic	chr12	-	1436	6	ISM	ENSMUSG00000021188.15	ENSMUST00000176728.2	1186	9	-32	4247	-17	-4247	5prime_fragment	FALSE	canonical	3	11	junction_5	4.33589667773576	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGATATTTTTACCTTGT	7516	False	NA	NA	False	NA	NA	NA	101879431	101860251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872076_101878948
transcript_31622.nic	chr12	-	963	5	ISM	ENSMUSG00000021188.15	ENSMUST00000176728.2	1186	9	-4	5915	-4	-5915	5prime_fragment	FALSE	canonical	3	11	junction_4	4.54835134966506	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTATTAAGGTAAATCAAA	7544	False	NA	NA	False	NA	NA	NA	101879403	101861919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_101861976_101865083_101865363_101868490_101868602_101872013_101872076_101878948
transcript_31626.known	chr12	-	743	2	FSM	ENSMUSG00000021188.15	ENSMUST00000085086.6	743	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACGTTGTTAGGGGAATAG	7533	False	NA	NA	False	ATTAAA	-18	NA	101879414	101878534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101878812_101878948
transcript_31630.known	chr12	-	5363	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCTCTATTTCTAATTT	NA	False	NA	-5	True	AATAAA	-20	NA	101924505	101885159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
transcript_31640.nic	chr12	-	1383	10	ISM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	-8	7267	-8	-3087	5prime_fragment	FALSE	canonical	3	190	junction_1	41.7943229649526	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTTTCCTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	101924513	101892426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
transcript_31641.known	chr12	-	879	9	FSM	ENSMUSG00000021189.12	ENSMUST00000159883.2	879	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_7	92.3612980365694	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGTTGCATATTTAATA	NA	False	NA	-25	True	AGTAAA	-15	NA	101924407	101899207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914305_101914533_101914699_101924392
transcript_31646.known	chr12	+	5732	15	FSM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_8	15.7246718923623	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCATGTTTCTTGTGCTT	NA	False	NA	11	True	NA	NA	NA	101942246	101972683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077_101963179_101963513_101963715_101964795_101964949_101965631_101965858_101966935_101967236_101968886_101969022_101969387
transcript_31654.nic	chr12	+	1625	9	ISM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	-245	9546	-245	-9546	5prime_fragment	FALSE	canonical	3	176	junction_8	17.5815066191723	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCAAGAAAGAAGCTGCTAA	NA	False	NA	NA	False	AAAAAG	-6	NA	101942001	101963137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077
transcript_31657.known	chr12	-	511	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_2	787	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAATTAGAAGAATTTAAA	NA	False	NA	-17	True	AATAAA	-12	NA	101942186	101934368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_101934470_101935751_101935894_101941918
transcript_31658.known	chr12	+	3892	10	FSM	ENSMUSG00000044456.17	ENSMUST00000056950.14	3892	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.36225462505214	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCTGAAGGAGCCAGAGT	NA	False	NA	NA	False	AATAAA	-22	NA	102249306	102357114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_102249586_102279233_102279442_102292053_102292172_102317140_102317214_102324963_102325056_102334622_102336108_102339828_102340138_102348811_102348944_102353812_102353977_102356082
transcript_3166.nic	chr1	-	708	3	ISM	ENSMUSG00000026234.13	ENSMUST00000185676.7	3072	12	-120	6646	-84	171	5prime_fragment	FALSE	canonical	3	5685	junction_2	152	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAGAGGATGAAGATGA	NA	False	NA	-169	True	NA	NA	NA	86287206	86284862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_86285175_86285828_86285946_86286927
transcript_31663.known	chr12	-	1990	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGTTTCTGGACTCT	7489	False	NA	-17	True	AAAACA	-15	NA	102406072	102360356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
transcript_31670.known	chr12	-	1835	13	FSM	ENSMUSG00000021190.15	ENSMUST00000110020.8	1835	13	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_3	47.188157648103	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGGCTTTGTGGTTTG	9960	False	NA	-3	True	AAAACA	-29	NA	102390028	102360342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843
transcript_31675.known	chr12	+	2827	13	FSM	ENSMUSG00000021192.17	ENSMUST00000179218.9	2827	13	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	16.7257286836777	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGAGTGCTTTATATT	NA	False	NA	NA	False	AATAAA	-18	NA	102435393	102464164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_102435623_102438256_102438825_102440804_102441033_102442428_102442649_102443055_102443180_102445856_102446061_102450662_102450834_102453378_102453508_102455677_102455777_102458271_102458498_102460012_102460119_102461958_102462023_102463705
transcript_31677.known	chr12	+	3390	13	FSM	ENSMUSG00000021192.17	ENSMUST00000021609.10	3390	13	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	41.9333962638637	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGAGTGCTTTATATTTT	NA	False	NA	NA	False	AATAAA	-20	NA	102435450	102464166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_102436241_102438256_102438825_102440804_102441033_102442428_102442649_102443055_102443180_102445856_102446061_102450662_102450834_102453378_102453508_102455677_102455777_102458271_102458498_102460012_102460119_102461958_102462023_102463705
transcript_31685.nic	chr12	+	1047	3	ISM	ENSMUSG00000021192.17	ENSMUST00000179218.9	2827	13	-31	23141	-31	-22818	5prime_fragment	FALSE	canonical	3	153	junction_1	13	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAGAAGGTAGGACCTTA	NA	False	NA	NA	False	AAGAAA	-1	NA	102435362	102441023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_102435623_102438256_102438825_102440804
transcript_31686.nic	chr12	+	1121	2	ISM	ENSMUSG00000021192.17	ENSMUST00000179218.9	2827	13	-20	25036	-20	-24713	5prime_fragment	FALSE	canonical	3	153	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTCTTTTTGACTCCAAA	NA	False	NA	NA	False	NA	NA	NA	102435373	102439128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_102435623_102438256
transcript_31687.known	chr12	+	1883	8	FSM	ENSMUSG00000021194.7	ENSMUST00000021610.7	1883	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	6.51841974088562	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTTTGATTTATTTTCG	NA	False	NA	24	True	AATAAA	-18	NA	102521227	102531287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_102521430_102522143_102522191_102524724_102524819_102525547_102525617_102527603_102527763_102527925_102528343_102528856_102529333_102530868
transcript_31690.nnic	chr12	-	3059	11	NNC	ENSMUSG00000057963.10	novel	2918	10	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	97.2501928018654	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTACGTGGTCACAGTC	2392	False	NA	-1	True	AATAAA	-20	NA	102671204	102534840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_102536744_102540180_102540344_102545363_102545432_102546539_102546666_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558_102589685_102641701_102641727_102670980
transcript_317.nic	chr1	+	3470	15	ISM	ENSMUSG00000025907.15	ENSMUST00000027040.13	7607	24	-469	27756	-469	-137	5prime_fragment	FALSE	canonical	3	127	junction_3	10.2869542903344	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTATTGAAAAAGTAAAAT	NA	False	NA	NA	False	AAGAAA	-1	NA	6284399	6319116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499
transcript_31703.known	chr12	-	2918	10	FSM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_5	27.4851250454756	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTACGTGGTCACAGTC	2407	False	NA	-1	True	AATAAA	-20	NA	102671189	102534840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102536744_102540180_102540344_102545363_102545432_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558_102589685_102641701_102641727_102670980
transcript_31712.known	chr12	+	3261	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	953	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	33	True	ATTAAA	-14	NA	102724225	102743966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
transcript_31721.nnic	chr12	-	970	3	NNC	ENSMUSG00000091931.6	novel	1152	2	NA	NA	-20	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATATTTTCTGTAGCCT	6339	False	NA	-4	True	AATAAA	-17	NA	102724082	102719536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_102719714_102719915_102720426_102723799
transcript_31722.known	chr12	+	3367	2	FSM	ENSMUSG00000046675.8	ENSMUST00000057416.8	3367	2	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCGTGCCATTGTCAT	NA	False	NA	NA	False	AAAACA	-45	NA	102710020	102713820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_102710426_102710858
transcript_31726.known	chr12	-	1312	2	FSM	ENSMUSG00000096458.8	ENSMUST00000173760.9	1312	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGACCCAAGGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	102709904	102708488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102709654_102709757
transcript_31727.known	chr12	-	1284	2	FSM	ENSMUSG00000096458.8	ENSMUST00000178384.2	1284	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGACCCAAGGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	102709920	102708488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102709654_102709801
transcript_31728.known	chr12	-	2795	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTTTGTATACAT	5490	False	NA	-23	True	AATAAA	-16	NA	102724931	102707990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102709654_102723799
transcript_31729.known	chr12	-	1152	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6362	False	NA	-1	True	AATAAA	-20	NA	102724059	102719533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102720426_102723799
transcript_31734.known	chr12	-	8157	12	FSM	ENSMUSG00000041702.8	ENSMUST00000223554.2	8157	12	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_10	26.1040511722473	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCTGAGTTGGACATAGTC	NA	False	NA	-12	True	AATAAA	-15	NA	102844665	102747055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102752192_102754193_102754644_102756963_102757143_102760004_102760195_102761431_102761576_102774158_102774320_102777378_102777455_102778893_102779103_102803876_102804957_102806358_102806547_102807297_102807451_102844474
transcript_31735.known	chr12	-	4035	11	FSM	ENSMUSG00000041702.8	ENSMUST00000045652.8	4035	11	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	8.02745289615579	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTCCTCTCTTTTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	102844537	102750896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102752192_102754193_102754644_102756963_102757143_102760004_102760195_102761431_102761576_102774158_102774320_102777378_102777455_102778893_102779103_102803876_102804957_102806358_102806547_102844474
transcript_31743.known	chr12	-	3509	3	FSM	ENSMUSG00000041702.8	ENSMUST00000221376.2	3509	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGGTATATCTTTATTG	NA	False	NA	NA	False	NA	NA	NA	102844730	102801891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_102804957_102806358_102806547_102844474
transcript_31745.known	chr12	+	458	2	FSM	ENSMUSG00000043319.6	ENSMUST00000053611.5	458	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCTTAGTATTGCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	102865574	102866785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_102865751_102866503
transcript_31746.known	chr12	-	909	5	FSM	ENSMUSG00000041669.16	ENSMUST00000074416.10	909	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.29903810567666	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	NA	False	NA	NA	False	AATGAA	-16	NA	103208409	103163166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_103163611_103168907_103169038_103201844_103201981_103207598_103207722_103208333
transcript_31749.known	chr12	+	2791	6	FSM	ENSMUSG00000021203.16	ENSMUST00000021620.13	2791	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	8.60232526704263	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8176	False	NA	NA	False	ATTAAA	-16	NA	103354956	103372604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
transcript_31751.nic	chr12	+	3032	6	NIC	ENSMUSG00000021203.16	novel	2791	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	32.5047688808888	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8170	False	NA	NA	False	ATTAAA	-16	NA	103354950	103372604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_103355368_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
transcript_31752.known	chr12	+	3055	5	FSM	ENSMUSG00000021203.16	ENSMUST00000141055.2	3055	5	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	9.35414346693485	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8244	False	NA	NA	False	ATTAAA	-16	NA	103355024	103372604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369688_103370484
transcript_31754.known	chr12	+	3228	7	FSM	ENSMUSG00000021203.16	ENSMUST00000101094.9	3228	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	44.854084417017	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAACTGTCAGTCTGGCT	8160	False	NA	NA	False	ATTAAA	-10	NA	103354940	103372598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_103355133_103358755_103359183_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
transcript_31762.known	chr12	-	3063	9	FSM	ENSMUSG00000041645.15	ENSMUST00000110001.4	3063	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	279.990624843047	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTGAGGGTGTTGCAGT	NA	False	NA	-13	True	ATTAAA	-19	NA	103392039	103374241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103391784
transcript_31764.known	chr12	-	2850	9	FSM	ENSMUSG00000041645.15	ENSMUST00000044923.15	2850	9	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_8	40.7106788815908	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGAGGGTGTTGCAGTG	NA	False	NA	-12	True	ATTAAA	-20	NA	103392078	103374240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
transcript_31766.known	chr12	-	2669	8	FSM	ENSMUSG00000041645.15	ENSMUST00000221211.2	2669	8	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_7	42.8480942828671	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGGTTGAGTAAAGGAG	NA	False	NA	NA	False	AATAAA	-14	NA	103392083	103375876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
transcript_31774.known	chr12	-	4274	2	FSM	ENSMUSG00000041645.15	ENSMUST00000220705.2	4274	2	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	103392089	103386634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_103390857_103392037
transcript_31777.known	chr12	+	977	7	FSM	ENSMUSG00000064215.14	ENSMUST00000085065.12	977	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	6.23832242407097	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6634	False	NA	5	True	AATAAA	-19	NA	103400517	103406498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403648_103403784_103403934_103403965_103405659_103405822_103406212
transcript_31779.known	chr12	+	889	6	FSM	ENSMUSG00000064215.14	ENSMUST00000066701.13	889	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.54400902933387	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6587	False	NA	5	True	AATAAA	-19	NA	103400470	103406498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403934_103403965_103405659_103405822_103406212
transcript_31781.known	chr12	+	708	4	FSM	ENSMUSG00000064215.14	ENSMUST00000076788.12	708	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7.58653778449403	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGGTGGAAATAAATTAAAC	6586	False	NA	-27	True	NA	NA	NA	103400469	103406466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_103400610_103401680_103401833_103405659_103405822_103406212
transcript_31782.known	chr12	-	463	4	FSM	ENSMUSG00000079017.4	ENSMUST00000055071.9	463	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.24721912892465	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTGTGGTGGCTCTTT	6294	False	NA	NA	False	AAAACA	-28	NA	103409939	103408425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_103408643_103409090_103409253_103409740_103409771_103409885
transcript_31785.nic	chr12	+	2128	5	NIC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	-84	738	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAGTGTTCACAGAGC	NA	False	NA	12	True	AATAAA	-18	NA	104214079	104220666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
transcript_318.nic	chr1	+	3150	15	ISM	ENSMUSG00000025907.15	ENSMUST00000027040.13	7607	24	-12	27619	-12	0	5prime_fragment	FALSE	canonical	3	127	junction_3	10.2869542903344	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAATTGAAAGAAAAT	NA	False	NA	NA	False	AATAAA	-2	NA	6284856	6319253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499
transcript_31806.nic	chr12	+	3005	2	ISM	ENSMUSG00000079014.5	ENSMUST00000109958.3	2200	6	-24	2183	-24	1453	intron_retention	FALSE	canonical	3	30	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATCCTTCTGGGCTTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	104229356	104233448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_104229474_104230560
transcript_31812.nnic	chr12	+	1823	5	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9715	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	12.328828005938	17	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGCTCTCAGCTTGCAG	639	False	NA	18	True	AATACA	-27	NA	104343707	104360516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_104343932_104355322_104355972_104357714_104357989_104358900_104359052_104359991
transcript_31814.known	chr12	-	1268	3	FSM	ENSMUSG00000021095.6	ENSMUST00000021513.6	1268	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	3	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTTCCTACCCTCGTG	NA	False	NA	-11	True	AATAAA	-26	NA	104439589	104437467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_104437906_104438251_104438512_104439019
transcript_31815.nnic	chr12	-	6461	29	NIC	ENSMUSG00000041415.12	novel	9851	27	NA	NA	-147	0	combination_of_known_junctions	FALSE	canonical	3	188	junction_19	35.6787501783024	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATAAACTCTTTGGAACTA	4263	False	NA	-41	True	AATAAA	-14	NA	104718358	104657701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660_104669442_104670324_104670501_104670977_104671084_104671311_104671495_104672471_104672626_104672809_104673024_104673111_104673292_104675034_104675175_104676043_104676120_104676883_104677017_104678439_104678595_104679253_104679497_104681032_104681166_104688229_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104704027_104704126_104705041_104705108_104718006
transcript_31817.known	chr12	-	9851	27	FSM	ENSMUSG00000041415.12	ENSMUST00000041987.8	9851	27	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_26	55.5751530194573	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGTCTTTAGCTTTGT	4410	False	NA	-8	True	AATAAA	-16	NA	104718211	104654000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660_104669442_104670324_104670501_104670977_104671084_104671311_104671495_104672471_104672626_104672809_104673024_104673111_104673292_104675034_104675175_104676043_104676120_104676883_104677017_104678439_104678595_104679253_104679497_104681032_104681166_104688229_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104718006
transcript_31822.nnic	chr12	-	1823	10	NIC	ENSMUSG00000041415.12	novel	1460	9	NA	NA	-147	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_7	17.1464281994822	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAATTGAAGAAAAAGA	4263	False	NA	NA	False	NA	NA	NA	104718358	104688342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104704027_104704126_104705041_104705108_104718006
transcript_31824.nnic	chr12	-	1636	9	NIC	ENSMUSG00000041415.12	novel	1460	9	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	67.2689332084284	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAATTGAAGAAAAAGA	4352	False	NA	NA	False	NA	NA	NA	104718269	104688342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_104688703_104690160_104690330_104694591_104694753_104695386_104695522_104696391_104696523_104697278_104697442_104698058_104698247_104705041_104705108_104718006
transcript_31826.nnic	chr12	-	536	4	NIC	ENSMUSG00000041415.12	novel	446	4	NA	NA	-147	-814	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	16.2138486760204	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAATGAAAGAAACACTGG	4263	False	NA	NA	False	NA	NA	NA	104718358	104698226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_104698247_104704027_104704126_104705041_104705108_104718006
transcript_31827.known	chr12	-	3529	14	FSM	ENSMUSG00000021097.16	ENSMUST00000109937.9	3529	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	16.3518994427135	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTTACTAATGTGTACC	NA	False	NA	NA	False	NA	NA	NA	104831268	104737738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_104738223_104739440_104739534_104740031_104740103_104740747_104740809_104743203_104743401_104746980_104748661_104750165_104750249_104751651_104751846_104756240_104756432_104758097_104758191_104763300_104763385_104766735_104766832_104770867_104770930_104831128
transcript_31828.known	chr12	-	11866	13	FSM	ENSMUSG00000021097.16	ENSMUST00000109936.3	11866	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	8.27143679578504	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCTTTGCTAACTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	104831335	104729375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_104738223_104740031_104740103_104740747_104740809_104743203_104743401_104746980_104748661_104750165_104750249_104751651_104751846_104756240_104756432_104758097_104758191_104763300_104763385_104766735_104766832_104770867_104770930_104831128
transcript_31832.nnic	chr12	-	3668	18	NNC	ENSMUSG00000054150.13	novel	3357	19	NA	NA	-770	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	1.12536038057112	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTCTGTCTATTTAT	NA	False	NA	NA	False	NA	NA	NA	104976838	104898286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_104898631_104905840_104905880_104906864_104907015_104909563_104909723_104911339_104911470_104912824_104912998_104913150_104913313_104919244_104919380_104920421_104920566_104921785_104921969_104924212_104924388_104925655_104925790_104927584_104927933_104929429_104929592_104934140_104934451_104935459_104935633_104941996_104942155_104976249
transcript_31834.known	chr12	-	527	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222812.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTCTCGTCTACTC	8338	False	NA	NA	False	NA	NA	NA	104998536	104996875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_104997085_104998218
transcript_31835.known	chr12	+	2925	2	FSM	ENSMUSG00000021102.5	ENSMUST00000021522.5	2925	2	0	0	0	0	multi-exon	FALSE	canonical	3	651	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCACACCCCCAGCTTCA	6360	False	NA	NA	False	AATAAA	-17	NA	104998948	105009165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_104999242_105006533
transcript_31839.nnic	chr12	-	1738	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-331	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.691777320082	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	-5	True	AATAAA	-20	NA	105189383	105183011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_105183321_105183364_105183961_105184481_105184552_105184917_105185089_105188791
transcript_3184.known	chr1	+	1216	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	21636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
transcript_31843.known	chr12	-	1398	4	FSM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	814.330945555238	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188996	105183008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_105183961_105184481_105184552_105184917_105185089_105188791
transcript_31844.known	chr12	-	760	4	FSM	ENSMUSG00000041359.15	ENSMUST00000176579.2	760	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	769.488574747323	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGACCTCGTCATTGGAA	NA	False	NA	NA	False	NA	NA	NA	105188965	105183566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_105183961_105184481_105184552_105184966_105185089_105188791
transcript_31847.nnic	chr12	-	1347	4	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	917.824601980139	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	-5	True	AATAAA	-20	NA	105189062	105183011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_105183321_105183364_105183961_105184917_105185089_105188791
transcript_31849.known	chr12	-	535	3	FSM	ENSMUSG00000041359.15	ENSMUST00000175652.2	535	3	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_2	399	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGGGCTCCAGAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	105189052	105183756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_105183961_105184481_105184552_105188791
transcript_31854.known	chr12	-	1299	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	973.5	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	105188975	105183016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_105183961_105184917_105185089_105188791
transcript_31857.known	chr12	+	3282	3	FSM	ENSMUSG00000097929.10	ENSMUST00000180458.9	3282	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	9	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTTATCTAATTTATT	NA	False	NA	NA	False	AATAAA	-18	NA	105302852	105350191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105303217_105303488_105303819_105347603
transcript_31858.nnic	chr12	+	1305	3	NNC	ENSMUSG00000097929.10	novel	3282	3	NA	NA	194	-1817	intron_retention	FALSE	canonical	3	11	junction_1	10.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGGAGAAGCACTTCTG	NA	False	NA	35	True	AATAAA	-29	NA	105303046	105348372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_105303253_105303488_105303819_105347603
transcript_31859.nic	chr12	+	1222	2	ISM	ENSMUSG00000097929.10	ENSMUST00000180458.9	3282	3	513	1819	114	-1817	3prime_fragment	FALSE	canonical	3	32	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGGAGAAGCACTTCTG	NA	False	NA	35	True	AATAAA	-29	NA	105303365	105348372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_105303819_105347603
transcript_3186.known	chr1	+	593	5	FSM	ENSMUSG00000026238.15	ENSMUST00000188533.2	593	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8722.60083060093	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACCAGAACTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	86454528	86457931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457725
transcript_31860.known	chr12	+	5786	2	FSM	ENSMUSG00000094910.2	ENSMUST00000178224.2	5786	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCCCACACACTT	NA	False	NA	8	True	ATTAAA	-22	NA	105420114	105459354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105420410_105453863
transcript_31863.known	chr12	+	3792	3	FSM	ENSMUSG00000021070.7	ENSMUST00000001652.7	3792	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGTTTCCCTGTGTCA	NA	False	NA	NA	False	AATAAA	-14	NA	105529484	105561496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105529508_105554455_105554560_105557831
transcript_31866.known	chr12	-	3833	11	FSM	ENSMUSG00000041341.11	ENSMUST00000221568.2	3833	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_9	7.93725393319377	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATGGAAGAAAGAAGGGC	NA	False	NA	NA	False	NA	NA	NA	105651459	105625522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_105627521_105628873_105628977_105629065_105629221_105630182_105630369_105630902_105631000_105632855_105633036_105635522_105635686_105636933_105637037_105637734_105637888_105641109_105641273_105650927
transcript_31868.known	chr12	+	2720	3	FSM	ENSMUSG00000044715.8	ENSMUST00000051934.7	2720	3	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	9.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAGCATAAAGCAGTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	105651642	105669282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105651718_105664976_105665236_105666896
transcript_31870.known	chr12	+	1064	2	FSM	ENSMUSG00000044715.8	ENSMUST00000222284.2	1064	2	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTGAGGGTGTAAATA	NA	False	NA	NA	False	AATAAA	-15	NA	105651087	105665410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105651718_105664976
transcript_31875.nic	chr12	+	1649	6	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	55396	0	16097	0	3prime_fragment	FALSE	canonical	3	37	junction_2	5.54977477020464	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTCTTTTATTGG	NA	False	NA	NA	False	AATAAA	-40	NA	105727630	105748706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788_105735010_105747108_105747268_105747929
transcript_31876.nnic	chr12	+	1576	5	NIC	ENSMUSG00000041323.7	novel	3099	18	NA	NA	16101	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	14.2653426176871	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTCTTTTATTGG	NA	False	NA	NA	False	AATAAA	-40	NA	105727634	105748706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_105727856_105732812_105733011_105734788_105735010_105747108_105747268_105747929
transcript_31882.known	chr12	+	4380	22	FSM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	0	0	0	0	multi-exon	FALSE	canonical	3	846	junction_12	378.82265398812	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAAGTAGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	105750952	105805066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
transcript_31893.known	chr12	+	2436	21	FSM	ENSMUSG00000021111.16	ENSMUST00000168186.8	2436	21	0	0	0	0	multi-exon	FALSE	canonical	3	846	junction_12	380.482125072913	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTAGTTAAAGTCTGTAA	NA	False	NA	NA	False	ATTAAA	-13	NA	105750962	105801152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968
transcript_31894.known	chr12	+	2605	21	FSM	ENSMUSG00000021111.16	ENSMUST00000170002.8	2605	21	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_19	453.97952597006	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAATTAGAAAGT	NA	False	NA	NA	False	AATACA	-45	NA	105751130	105803532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105800968_105801044_105803023
transcript_319.nic	chr1	+	3529	15	ISM	ENSMUSG00000025907.15	ENSMUST00000027040.13	7607	24	-12	27240	-12	379	5prime_fragment	FALSE	canonical	3	127	junction_3	10.2869542903344	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGCAAAGAATTGACCAGA	NA	False	NA	NA	False	ATTAAA	-10	NA	6284856	6319632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499
transcript_31901.known	chr12	+	4356	21	FSM	ENSMUSG00000021111.16	ENSMUST00000169938.8	4356	21	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_6	426.918657357581	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATAGTTGGCTGGTTTC	NA	False	NA	12	True	AATAAA	-18	NA	105751001	105805203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
transcript_31904.nic	chr12	+	2165	19	ISM	ENSMUSG00000021111.16	ENSMUST00000168186.8	2436	21	-7	5647	3	0	5prime_fragment	FALSE	canonical	3	846	junction_12	382.178296087049	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAGTCCTAAGAAAACCA	NA	False	NA	NA	False	AATAAA	-3	NA	105750955	105795505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315
transcript_31910.known	chr12	+	2076	12	FSM	ENSMUSG00000021111.16	ENSMUST00000166498.8	2076	12	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	335.398664968735	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCTGTCTCTGTGTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	105750991	105780328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456
transcript_31916.known	chr12	+	1033	9	FSM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	0	0	0	0	multi-exon	FALSE	canonical	3	1577	junction_3	94.8235202890085	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105751015	105775968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
transcript_31932.known	chr12	+	1742	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAGCGTTTATTGAATG	NA	False	NA	23	True	AATAAA	-29	NA	105976574	106041668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
transcript_31937.known	chr12	+	3711	14	FSM	ENSMUSG00000021115.16	ENSMUST00000085026.12	3711	14	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_12	169.729126349489	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTATTTGTTTG	NA	False	NA	17	True	NA	NA	NA	105976550	106043685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
transcript_31939.known	chr12	+	2520	14	FSM	ENSMUSG00000021115.16	ENSMUST00000221312.2	2520	14	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_12	248.778292970376	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976541	106041459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106037901_106039877_106039938_106041265
transcript_31945.known	chr12	+	1509	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAATCTTTAGTCGTCA	NA	False	NA	NA	False	ATTAAA	-42	NA	105976486	106041479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
transcript_31971.known	chr12	-	2888	3	FSM	ENSMUSG00000048251.16	ENSMUST00000109891.3	2888	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATTAAAAAAAAAAAAA	5275	False	NA	NA	False	NA	NA	NA	107969673	107881480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_107883674_107955723_107956090_107969344
transcript_31978.nic	chr12	-	2750	14	NIC	ENSMUSG00000056770.16	novel	2755	13	NA	NA	-40	67	combination_of_known_junctions	FALSE	canonical	3	36	junction_13	177.875064192647	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGACTCGAGTCCTCGTT	NA	False	NA	0	True	ATTAAA	-26	NA	108145613	108072857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108133531_108133655_108145411
transcript_31981.known	chr12	-	2755	13	FSM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_9	51.1017503505397	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTGTTCCTTGTC	NA	False	NA	0	True	ATTAAA	-19	NA	108145573	108072689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
transcript_31993.nic	chr12	-	2643	12	NIC	ENSMUSG00000056770.16	novel	2755	13	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_9	135.793596411783	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTGTTCCTTGTC	NA	False	NA	0	True	ATTAAA	-19	NA	108145610	108072689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108129231_108129325_108131321_108131432_108145411
transcript_31998.nic	chr12	-	2467	12	NIC	ENSMUSG00000056770.16	novel	2755	13	NA	NA	-29	67	combination_of_known_junctions	FALSE	canonical	3	90	junction_9	135.793596411783	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGACTCGAGTCCTCGTT	NA	False	NA	0	True	ATTAAA	-26	NA	108145602	108072857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108129231_108129325_108131321_108131432_108145411
transcript_32.known	ERCC-00085	+	828	1	FSM	ERCC-00085A	DQ883669	828	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00085_+_0_800
transcript_32007.known	chr12	-	1738	10	FSM	ENSMUSG00000056770.16	ENSMUST00000132682.8	1738	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	181.156436046274	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGTGAATAGCAGCGGAGA	NA	False	NA	NA	False	NA	NA	NA	108145486	108073296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108124012_108124270_108124534_108124608_108129231_108129325_108131321_108131432_108145411
transcript_32011.known	chr12	-	2387	8	FSM	ENSMUSG00000056770.16	ENSMUST00000109879.8	2387	8	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_4	59.870949652105	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAGAAAACTCTTGGTAT	NA	False	NA	NA	False	NA	NA	NA	108145475	108083033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
transcript_32012.known	chr12	+	2789	12	FSM	ENSMUSG00000021258.11	ENSMUST00000221167.2	2789	12	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_11	12.5217166726353	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTTATGTGTGAGTACAG	NA	False	NA	24	True	AATAAA	-17	NA	108145837	108169616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_108146140_108148435_108148468_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597_108162632_108165567_108165643_108168334
transcript_32014.known	chr12	-	1302	7	FSM	ENSMUSG00000084883.3	ENSMUST00000136175.3	1302	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	32.190405748021	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTTCTCCGTGGACGT	NA	False	NA	NA	False	NA	NA	NA	108241392	108172603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108172694_108173380_108173480_108174092_108174189_108177773_108177882_108183045_108183085_108187967_108188042_108240596
transcript_32015.known	chr12	-	4298	6	FSM	ENSMUSG00000084883.3	ENSMUST00000222310.2	4298	6	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_4	9.83056458195561	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCGAGTGTGTAGTGCT	NA	False	NA	-7	True	AATAAA	-19	NA	108241684	108169860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108172694_108173380_108173480_108174092_108174189_108177773_108177882_108187967_108188042_108240596
transcript_32016.known	chr12	+	2118	15	FSM	ENSMUSG00000021259.6	ENSMUST00000021684.6	2118	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.28769688409428	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTACGGCCACCCAGG	NA	False	NA	NA	False	NA	NA	NA	108300639	108328493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_108300824_108308581_108308663_108309272_108309355_108311832_108311907_108312347_108312435_108317440_108317580_108318172_108318284_108319032_108319184_108319348_108319412_108321682_108321756_108323745_108323831_108324289_108324401_108326739_108326829_108327454_108327522_108327772
transcript_32017.known	chr12	+	4160	22	FSM	ENSMUSG00000058070.15	ENSMUST00000109860.8	4160	22	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_11	3.09120616516523	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTATTGACCTACGTT	NA	False	NA	NA	False	AATAAA	-14	NA	108389074	108505823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_108389521_108429785_108429969_108438111_108438245_108454547_108454680_108468648_108468678_108472737_108472868_108475344_108475495_108476435_108476506_108478079_108478191_108479233_108479330_108480636_108480772_108481374_108481475_108482718_108482874_108487574_108487701_108487906_108488039_108493955_108494024_108496562_108496652_108500912_108501011_108501123_108501212_108502485_108502582_108503592_108503724_108504361
transcript_3202.known	chr1	+	768	4	FSM	ENSMUSG00000026238.15	ENSMUST00000186255.7	768	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	10628.523175347	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTACTTCAGACTTTAC	NA	False	NA	NA	False	NA	NA	NA	86454457	86458093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86454673_86456894_86456967_86457452_86457527_86457686
transcript_32020.known	chr12	-	1287	3	FSM	ENSMUSG00000021263.12	ENSMUST00000021691.6	1287	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTTTTCCTTCTTTTG	NA	False	NA	NA	False	ATTAAA	-21	NA	108668570	108656480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108656870_108658152_108658896_108668415
transcript_32026.known	chr12	+	6178	5	FSM	ENSMUSG00000021264.13	ENSMUST00000021692.9	6178	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	10.779030568655	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTTCTTGTTTGTT	NA	False	NA	25	True	AATAAA	-25	NA	108758898	108786074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_108760018_108772404_108772568_108778844_108778906_108780531_108780691_108781398
transcript_32034.nic	chr12	+	1315	2	ISM	ENSMUSG00000021264.13	ENSMUST00000021692.9	6178	5	-33	13507	-33	-8923	5prime_fragment	FALSE	canonical	3	62	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTTGCAAGAACCTTTC	NA	False	NA	NA	False	NA	NA	NA	108758865	108772567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_108760018_108772404
transcript_32035.known	chr12	-	1976	4	FSM	ENSMUSG00000021265.4	ENSMUST00000021693.4	1976	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	5.09901951359278	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAAGCTCCTCTGTGCGT	NA	False	NA	NA	False	AATAAA	-18	NA	108801809	108791798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108793415_108793599_108793684_108797122_108797167_108801577
transcript_32044.nnic	chr12	+	2838	8	NIC	ENSMUSG00000040877.17	novel	4356	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	25.1054917156728	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCGTGGTCAT	4850	False	NA	NA	False	NA	NA	NA	108860197	108994374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_108860257_108862817_108862986_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
transcript_32047.nic	chr12	+	2695	7	NIC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	2	14	junction_1	19.6694913225759	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCGTGGTCAT	4825	False	NA	NA	False	NA	NA	NA	108860172	108994374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_108860257_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
transcript_32060.known	chr12	+	2657	7	FSM	ENSMUSG00000040877.17	ENSMUST00000167816.8	2657	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23.6713610367747	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4850	False	NA	NA	False	NA	NA	NA	108860197	108994378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_108860240_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
transcript_32063.known	chr12	-	2878	11	FSM	ENSMUSG00000021266.17	ENSMUST00000160477.8	2878	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	772.921237902026	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860063	108825955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108850190_108850275_108854301_108854475_108859994
transcript_32069.nic	chr12	-	1914	11	NIC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	246	junction_1	519.514003661114	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	-35	True	AATAAA	-15	NA	108860122	108825959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
transcript_32076.known	chr12	-	2764	10	FSM	ENSMUSG00000021266.17	ENSMUST00000161410.8	2764	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	620.186073232944	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108859124	108825955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
transcript_32077.known	chr12	-	2831	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	0	0	0	0	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	2868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860100	108825955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
transcript_321.nic	chr1	+	3980	15	ISM	ENSMUSG00000025907.15	ENSMUST00000027040.13	7607	24	-12	26789	-12	830	5prime_fragment	FALSE	canonical	3	127	junction_3	10.2869542903344	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAAAGAACAAATAGTTGA	NA	False	NA	NA	False	AATAGA	-8	NA	6284856	6320083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499
transcript_32102.known	chr12	+	4653	6	FSM	ENSMUSG00000040856.18	ENSMUST00000056110.15	4653	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	11.0995495404093	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTGCTATTTACTT	NA	False	NA	NA	False	AATAAA	-16	NA	109418774	109429262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_109419221_109419512_109419653_109420910_109420975_109421418_109421550_109423999_109424142_109425532
transcript_32105.known	chr12	+	1703	5	FSM	ENSMUSG00000040856.18	ENSMUST00000109844.11	1703	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.02336923485777	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGTAACAGAACCAGGAC	NA	False	NA	NA	False	TATAAA	-24	NA	109419380	109426626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_109419653_109420910_109420975_109421418_109421550_109423999_109424142_109425532
transcript_32114.nic	chr12	+	1861	10	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_3	145.012983667321	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506879	109538156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_32122.known	chr12	+	1896	10	FSM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	140.228473183437	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGCAGTGATGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	109506887	109538155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_109506983_109509582_109509733_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_32136.nic	chr12	+	1768	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	187	junction_2	97.0602261485105	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506878	109538156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_32150.nic	chr12	+	1814	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506876	109538156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_3216.known	chr1	-	1306	5	FSM	ENSMUSG00000026239.15	ENSMUST00000143674.8	1306	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	145.167145043222	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGCATGCCGATGCTTCC	NA	False	NA	-11	True	ATTAAA	-15	NA	86510351	86470743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475157_86475340_86510021
transcript_32168.nic	chr12	+	1685	8	NIC	ENSMUSG00000021268.18	novel	1988	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	137.349249457471	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506880	109538156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_3217.known	chr1	-	1159	5	FSM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	25.5391855782443	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGGACTGTGACTCT	NA	False	NA	17	True	ATTAAA	-43	NA	86510269	86470715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475250_86475340_86510021
transcript_32184.nic	chr12	+	1729	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	128.442792792777	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506880	109538156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_322.nic	chr1	+	4059	15	ISM	ENSMUSG00000025907.15	ENSMUST00000027040.13	7607	24	-12	26710	-12	909	5prime_fragment	FALSE	canonical	3	127	junction_3	10.2869542903344	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCCAACAAGAAGAGAAG	NA	False	NA	NA	False	AAAACA	-15	NA	6284856	6320162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_6285182_6298163_6298274_6300182_6300298_6304184_6304312_6304452_6304624_6308485_6308689_6310175_6310603_6314328_6314500_6315018_6315204_6315381_6315569_6315648_6315731_6315821_6315884_6317929_6318034_6318289_6318417_6318499
transcript_32209.known	chr12	+	1498	3	FSM	ENSMUSG00000021268.18	ENSMUST00000129245.8	1498	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	159.5	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109506883	109511202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_109506983_109509582_109509689_109509909
transcript_32210.nic	chr12	+	1661	3	ISM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	-103	26933	-99	20	intron_retention	FALSE	canonical	3	281	junction_2	112.5	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAGAAATAAAGAGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	109506784	109511222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_109506983_109509582_109509733_109509909
transcript_32211.known	chr12	+	457	3	FSM	ENSMUSG00000021268.18	ENSMUST00000128178.2	457	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	92.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTTGTGACTGATCATG	NA	False	NA	NA	False	NA	NA	NA	109508150	109510190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_109508221_109509582_109509689_109509909
transcript_32216.known	chr12	+	694	2	FSM	ENSMUSG00000097391.9	ENSMUST00000182300.2	694	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTGCGTGTCTGTATT	4789	False	NA	21	True	AATAAA	-21	NA	109714397	109715892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_109714728_109715528
transcript_32217.known	chr12	-	642	1	FSM	ENSMUSG00000113625.2	ENSMUST00000222259.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	False	NA	NA	False	AATATA	-45	NA	109861527	109860885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_109860900_109861500
transcript_32218.known	chr12	+	2030	1	FSM	ENSMUSG00000075707.7	ENSMUST00000173014.3	2030	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGGTCCGTTTATTT	NA	False	NA	27	True	AATAAA	-24	NA	110245501	110247531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110245500_110247500
transcript_3222.known	chr1	+	5383	8	FSM	ENSMUSG00000026240.13	ENSMUST00000121534.8	5383	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	127.599500990643	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATTAAAAAAAAAAAAAGA	6007	False	NA	NA	False	ACTAAA	-5	NA	86510625	86537097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86510819_86514737_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
transcript_32223.known	chr12	+	1971	15	FSM	ENSMUSG00000017843.15	ENSMUST00000221074.2	1971	15	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_14	373.202494687289	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCTGTGGTCCTCTGAAA	5041	False	NA	NA	False	NA	NA	NA	110452292	110547294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110541178_110541296_110544534_110544603_110546834
transcript_3223.nnic	chr1	+	2046	7	NIC	ENSMUSG00000026240.13	novel	5383	8	NA	NA	2	-66	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	132.540140670247	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTTGTGTCAATATT	6009	False	NA	27	True	AATACA	-17	NA	86510627	86533982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_86510819_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
transcript_32234.known	chr12	+	1847	14	FSM	ENSMUSG00000017843.15	ENSMUST00000084985.11	1847	14	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_13	338.054020402153	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAAAGTCAGAGCTGTAG	5041	False	NA	NA	False	NA	NA	NA	110452292	110547238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110541178_110541296_110546834
transcript_32245.known	chr12	+	4108	13	FSM	ENSMUSG00000017843.15	ENSMUST00000109832.3	4108	13	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_12	229.453638502906	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGCTCTATGAAACTAAATT	4921	False	NA	3	True	AATAAA	-17	NA	110452172	110549496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110546834
transcript_32252.nnic	chr12	+	2472	12	NNC	ENSMUSG00000017843.15	novel	956	8	NA	NA	-1777	0	at_least_one_novel_splicesite	TRUE	canonical	3	32	junction_1	278.776903604784	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	3143	False	NA	14	True	AATAAA	-16	NA	110450394	110538122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_110450715_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
transcript_32254.known	chr12	+	2367	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	4920	False	NA	14	True	AATAAA	-16	NA	110452171	110538122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
transcript_32268.nic	chr12	+	1396	11	ISM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	-22	2633	-22	-1856	5prime_fragment	FALSE	canonical	3	738	junction_1	94.7520976021112	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGGCTCCTCGCCCAG	4898	False	NA	20	True	NA	NA	NA	110452149	110535489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387
transcript_3227.known	chr1	+	2231	7	FSM	ENSMUSG00000026240.13	ENSMUST00000027446.11	2231	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_3	30.6743649757687	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	AAAAAG	-12	NA	86514821	86534222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
transcript_3228.known	chr1	-	1042	3	FSM	ENSMUSG00000026241.6	ENSMUST00000027449.6	1042	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGTCTTTATTTATTC	NA	False	NA	NA	False	AAAAAG	-20	NA	86598293	86594012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_86594521_86597365_86597677_86598070
transcript_32288.known	chr12	-	3281	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	0	0	0	0	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGATTGGGTTGTA	NA	False	NA	NA	False	NA	NA	NA	110662829	110657038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
transcript_3229.known	chr1	+	3154	22	FSM	ENSMUSG00000053333.16	ENSMUST00000168237.8	3154	22	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	26.8303649010897	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGTGTAGATGCCATG	NA	False	NA	15	True	AATAAA	-16	NA	86631540	86977817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86719137_86719180_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
transcript_32294.nic	chr12	-	1932	9	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-135	2104	-135	0	5prime_fragment	FALSE	canonical	3	11114	junction_5	1011.4284144219	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCCAGAAGATGAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	110662964	110659142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
transcript_32304.nic	chr12	-	1175	5	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-199	3570	-199	0	5prime_fragment	FALSE	canonical	3	11114	junction_1	618.781261836523	1217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGAAGATAAAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	110663028	110660608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
transcript_32307.nic	chr12	-	1092	5	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-199	3653	-199	-83	5prime_fragment	FALSE	canonical	3	11114	junction_1	618.781261836523	2114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTCTGATGATAAACCTG	NA	False	NA	23	True	NA	NA	NA	110663028	110660691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
transcript_3231.known	chr1	+	3085	21	FSM	ENSMUSG00000053333.16	ENSMUST00000065694.8	3085	21	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	12.4998999996	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTCTGTGTAGATGCC	NA	False	NA	12	True	AATAAA	-13	NA	86631564	86977814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
transcript_32316.nic	chr12	-	799	4	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-50	4024	-50	0	5prime_fragment	FALSE	canonical	3	11583	junction_2	515.902014813752	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGGAGATCGTGAAGA	NA	False	NA	-19	True	NA	NA	NA	110662879	110661062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_-_110661139_110661485_110661853_110661952_110662115_110662685
transcript_32317.known	chr12	-	325	2	FSM	ENSMUSG00000021270.14	ENSMUST00000129005.2	325	2	0	0	0	0	multi-exon	FALSE	canonical	3	14594	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCCAGAAGATGAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	110659614	110659142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110659307_110659453
transcript_32325.known	chr12	+	2384	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	4	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5346	False	NA	19	True	AATAAA	-18	NA	110704425	110761462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110704712_110745729_110745913_110759547
transcript_32328.known	chr12	+	2252	1	FSM	ENSMUSG00000037957.15	ENSMUST00000191983.2	2252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATCAAACCA	5343	False	NA	NA	False	NA	NA	NA	110704422	110706674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110704400_110706700
transcript_32337.nnic	chr12	-	1701	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1778	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_11	66.2311254884822	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9450	False	NA	-3	True	AATATA	-18	NA	110805583	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
transcript_32338.known	chr12	-	1693	12	FSM	ENSMUSG00000056458.17	ENSMUST00000070565.15	1693	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_11	66.0974737267458	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7660	False	NA	-3	True	AATATA	-18	NA	110807373	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
transcript_32341.nnic	chr12	-	1733	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_10	81.0791879013585	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7665	False	NA	-3	True	AATATA	-18	NA	110807368	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794610_110800559_110800675_110807179
transcript_32346.nnic	chr12	-	1527	11	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1778	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_10	69.773992289391	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9450	False	NA	-3	True	AATATA	-18	NA	110805583	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
transcript_32347.nic	chr12	-	1567	11	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_10	69.6330381356436	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7612	False	NA	-3	True	AATATA	-18	NA	110807421	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
transcript_32358.nnic	chr12	-	1540	10	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1778	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_8	78.692086288549	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9450	False	NA	-3	True	AATATA	-18	NA	110805583	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
transcript_32359.nic	chr12	-	1527	10	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_8	78.5509192408354	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7665	False	NA	-3	True	AATATA	-18	NA	110807368	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807179
transcript_32363.nnic	chr12	-	1375	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	86.7942070359537	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7665	False	NA	-3	True	AATATA	-18	NA	110807368	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
transcript_32367.nic	chr12	-	1489	9	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_8	74.9615526453395	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7588	False	NA	-3	True	AATATA	-18	NA	110807445	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
transcript_32369.nnic	chr12	-	1366	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1778	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_7	83.7383387403882	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9450	False	NA	-3	True	AATATA	-18	NA	110805583	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
transcript_3237.known	chr1	-	891	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1622	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTAACCTAATTAAACA	NA	False	NA	NA	False	NA	NA	NA	86837405	86836514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_86836500_86837400
transcript_32370.nic	chr12	-	1406	9	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_7	83.5867812515831	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7612	False	NA	-3	True	AATATA	-18	NA	110807421	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807179
transcript_32374.nic	chr12	-	1254	8	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_7	79.9971938283348	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7649	False	NA	-3	True	AATATA	-18	NA	110807384	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
transcript_32375.nnic	chr12	-	1161	8	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	94.5211346628847	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7665	False	NA	-3	True	AATATA	-18	NA	110807368	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807256
transcript_3238.known	chr1	+	2665	1	FSM	ENSMUSG00000102571.2	ENSMUST00000195634.2	2665	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGAAGAAGAAGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	86845713	86848378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_86845700_86848400
transcript_32380.known	chr12	-	1132	7	FSM	ENSMUSG00000056458.17	ENSMUST00000084974.11	1132	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	105.076162853427	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7669	False	NA	-3	True	AATATA	-18	NA	110807364	110774231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110774556_110774638_110774840_110776342_110776458_110779948_110780128_110781401_110781451_110781564_110781644_110807179
transcript_32387.nnic	chr12	+	3394	10	NNC	ENSMUSG00000021271.6	novel	3723	8	NA	NA	0	4824	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_8	22.6050360389226	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTGGGTGGTGATGGC	NA	False	NA	NA	False	NA	NA	NA	110816686	110841254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_110816998_110821433_110822307_110827229_110827458_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583_110834917_110837654_110837731_110840171
transcript_3239.known	chr1	+	1680	11	FSM	ENSMUSG00000036500.5	ENSMUST00000044878.4	1680	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.894427190999916	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCAGCACATCTAGGCTC	NA	False	NA	NA	False	GGGGCT	-16	NA	87052729	87055634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87052797_87052879_87052997_87053113_87053230_87053348_87053524_87053601_87053775_87054031_87054167_87054247_87054321_87054449_87054585_87054657_87054850_87055051_87055166_87055251
transcript_32391.nnic	chr12	+	3166	9	NNC	ENSMUSG00000021271.6	novel	3723	8	NA	NA	0	4824	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	21.2658029474553	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTGGGTGGTGATGGC	NA	False	NA	NA	False	NA	NA	NA	110816686	110841254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_110816998_110821433_110822307_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583_110834917_110837654_110837731_110840171
transcript_32392.known	chr12	+	3723	8	FSM	ENSMUSG00000021271.6	ENSMUST00000170060.4	3723	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	20.4500386706884	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGCTTTCTTGATGTGT	NA	False	NA	13	True	AGTAAA	-16	NA	110816712	110836430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110816998_110821433_110822307_110827229_110827458_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583
transcript_32395.nnic	chr12	+	3474	8	NNC	ENSMUSG00000021271.6	novel	3723	8	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	20.5634905319389	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATTTGTTCTTGCTTTCT	NA	False	NA	5	True	AGTAAA	-8	NA	110816686	110836422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_110816998_110821433_110822307_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583_110835550_110835588
transcript_32397.known	chr12	+	2385	7	FSM	ENSMUSG00000021271.6	ENSMUST00000222460.2	2385	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	9.97914491994847	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGTTTATTTTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	110816739	110835347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110816998_110821433_110822307_110830397_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583
transcript_32404.known	chr12	-	1579	6	FSM	ENSMUSG00000021276.11	ENSMUST00000220607.2	1579	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	194.982460749679	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATATTAATCCTGTTG	3397	False	NA	-10	True	NA	NA	NA	110855531	110839595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110840564_110843274_110843405_110843656_110843807_110846118_110846249_110850323_110850493_110855499
transcript_3241.known	chr1	-	2898	18	FSM	ENSMUSG00000026247.14	ENSMUST00000160810.2	2898	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_8	3.05089470115057	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATAGCCTTGGCCTCCA	6040	False	NA	NA	False	AATAAA	-12	NA	87083887	87075383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_87075809_87075947_87076025_87076346_87076443_87076855_87076922_87077217_87077343_87077505_87077574_87078198_87078251_87078327_87078387_87078621_87078726_87078856_87078932_87079170_87079270_87079704_87079928_87080540_87080666_87080841_87080935_87081022_87081134_87081239_87081309_87081925_87082811_87083741
transcript_32411.known	chr12	-	2029	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTTCCTGTCTCAGCCT	3349	False	NA	NA	False	TATAAA	-29	NA	110855579	110839043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
transcript_32414.known	chr12	-	723	5	FSM	ENSMUSG00000021276.11	ENSMUST00000222457.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	152.938508885107	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTTTGTAGGAGGTTA	3378	False	NA	-19	True	AATAAA	-8	NA	110855550	110841467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110841711_110843274_110843405_110846118_110846249_110850323_110850493_110855499
transcript_32418.nnic	chr12	-	1233	5	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	211.668815605889	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	3361	False	NA	0	True	AATAAA	-21	NA	110855567	110844025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110844549_110845130_110845474_110846118_110846249_110850323_110850493_110855499
transcript_32419.known	chr12	-	744	5	FSM	ENSMUSG00000021276.11	ENSMUST00000221901.2	744	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	213.008802635008	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTAGTTATTTCTGT	3361	False	NA	-3	True	AATAAA	-18	NA	110855567	110844028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110844354_110845421_110845474_110846118_110846249_110850323_110850493_110855499
transcript_3242.known	chr1	-	3033	18	FSM	ENSMUSG00000026247.14	ENSMUST00000161002.8	3033	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	3.6442114121726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGGCCTCCAGACAAGT	5684	False	NA	NA	False	AATAAA	-19	NA	87084243	87075376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_87075809_87075947_87076025_87076346_87076443_87076855_87076922_87077217_87077343_87077505_87077574_87078198_87078251_87078327_87078387_87078621_87078726_87078856_87078932_87079170_87079270_87079704_87079928_87080540_87080666_87080841_87080935_87081022_87081134_87081239_87081309_87081925_87082811_87083969
transcript_32420.known	chr12	-	536	4	FSM	ENSMUSG00000021276.11	ENSMUST00000221102.2	536	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	203.882318997995	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTCACCGGGCCCTGTGA	3375	False	NA	NA	False	NA	NA	NA	110855553	110840380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110840564_110846118_110846249_110850323_110850493_110855499
transcript_32423.nnic	chr12	-	2284	4	NNC	ENSMUSG00000021276.11	novel	445	4	NA	NA	-394	3	intron_retention	FALSE	canonical	3	5	junction_1	206.236649399556	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	2955	False	NA	0	True	AATAAA	-21	NA	110855973	110844025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110844549_110845130_110846249_110850323_110850493_110855499
transcript_32424.known	chr12	-	702	4	FSM	ENSMUSG00000021276.11	ENSMUST00000223407.2	702	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	192.582449875372	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCTGCTCTTTCTTTTTT	3370	False	NA	-2	True	AATACA	-15	NA	110855558	110845129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110845474_110846118_110846249_110850323_110850493_110855499
transcript_32425.known	chr12	-	633	3	FSM	ENSMUSG00000021276.11	ENSMUST00000221963.2	633	3	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_1	12	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTATGTCAGGTTGTGGTC	3363	False	NA	NA	False	NA	NA	NA	110855565	110845850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110846249_110850323_110850493_110855499
transcript_32428.known	chr12	+	438	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6299	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	110864547	110864985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110864500_110865000
transcript_32429.known	chr12	+	7778	20	FSM	ENSMUSG00000021275.17	ENSMUST00000165978.3	7778	20	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.72278616298412	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTAATTTTGCAGTAT	5383	False	NA	15	True	NA	NA	NA	110855697	110938828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_110855761_110862520_110862809_110881083_110881213_110881780_110881913_110885302_110885461_110892597_110892911_110895465_110895599_110897833_110898167_110899050_110900067_110902709_110902894_110904624_110904799_110906190_110906372_110907886_110908029_110911078_110911320_110912755_110912846_110914135_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
transcript_32430.nnic	chr12	-	1673	4	NNC	ENSMUSG00000037904.15	novel	1563	4	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	38.9386982604994	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGAGGGATCTGCCTGGT	NA	False	NA	-9	True	NA	NA	NA	110945521	110942862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_110943983_110944079_110944205_110944381_110944562_110945273
transcript_32431.known	chr12	-	1563	4	FSM	ENSMUSG00000037904.15	ENSMUST00000135131.2	1563	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	45.784519460427	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGAGGGATCTGCCTGGT	NA	False	NA	-9	True	NA	NA	NA	110945429	110942862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110943983_110944097_110944205_110944381_110944562_110945273
transcript_32433.known	chr12	-	2577	3	FSM	ENSMUSG00000037904.15	ENSMUST00000128353.8	2577	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	17	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTCGTCTTGACTGGAG	NA	False	NA	NA	False	AAAAAG	-22	NA	110945474	110941786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110943983_110944381_110944562_110945273
transcript_32434.known	chr12	-	1706	3	FSM	ENSMUSG00000037904.15	ENSMUST00000043459.13	1706	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	30.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGGATCTGCCTGGTCT	NA	False	NA	-7	True	NA	NA	NA	110945455	110942860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_110944205_110944381_110944562_110945273
transcript_32437.nic	chr12	+	2114	13	NIC	ENSMUSG00000021277.17	novel	7060	12	NA	NA	23	-537	combination_of_known_junctions	FALSE	canonical	1	7	junction_2	15.2886577421157	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATAGTGGATACCTCGG	NA	False	NA	NA	False	ATTAAA	-21	NA	111132826	111228457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111133037_111133432_111133542_111186244_111186356_111203995_111204255_111205462_111205515_111208876_111208982_111209804_111209973_111214999_111215081_111217563_111217639_111219097_111219191_111221656_111221798_111227070_111227246_111227922
transcript_32439.nic	chr12	+	2730	13	NIC	ENSMUSG00000021277.17	novel	7060	12	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	1	7	junction_2	15.2886577421157	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGTCTCTGTTTTAAT	NA	False	NA	18	True	AATATA	-25	NA	111132747	111228994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111133037_111133432_111133542_111186244_111186356_111203995_111204255_111205462_111205515_111208876_111208982_111209804_111209973_111214999_111215081_111217563_111217639_111219097_111219191_111221656_111221798_111227070_111227246_111227922
transcript_32442.known	chr12	+	7060	12	FSM	ENSMUSG00000021277.17	ENSMUST00000021706.11	7060	12	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	10.269911118416	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCGGCTCTCTGGCTGTGG	NA	False	NA	9	True	AATAAA	-13	NA	111132896	111233582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111133037_111186244_111186356_111203995_111204255_111205462_111205515_111208876_111208982_111209804_111209973_111214999_111215081_111217563_111217639_111219097_111219191_111221656_111221798_111227070_111227246_111227922
transcript_32446.known	chr12	-	6714	37	FSM	ENSMUSG00000021279.6	ENSMUST00000041965.5	6714	37	0	0	0	0	multi-exon	TRUE	canonical	3	105	junction_28	14.8707393524629	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGGTTTGTCTGATAG	NA	False	NA	-3	True	AATAAA	-25	NA	111344152	111259409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111260667_111261327_111261399_111261489_111261596_111262172_111262291_111262381_111262500_111262642_111262728_111262813_111262912_111265516_111266117_111268243_111268307_111268447_111268665_111270263_111270346_111271405_111271546_111272099_111272237_111272875_111272982_111274212_111274291_111274541_111274632_111277920_111278001_111279760_111279856_111280857_111281007_111283892_111283999_111284341_111284467_111284869_111284976_111285062_111285308_111286411_111286523_111287397_111287641_111287904_111288039_111289236_111289357_111289440_111289608_111291417_111291498_111292393_111292643_111293849_111294051_111295572_111295667_111302459_111302609_111306254_111306351_111308459_111308544_111311965_111312058_111343530
transcript_32452.known	chr12	+	670	4	FSM	ENSMUSG00000087075.3	ENSMUST00000150384.3	670	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGCTTCTGCTAGTGG	NA	False	NA	NA	False	NA	NA	NA	111373242	111378524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111373302_111374958_111375046_111376620_111376778_111378157
transcript_32453.known	chr12	+	2778	14	FSM	ENSMUSG00000021280.10	ENSMUST00000072646.8	2778	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGTTGGGCAAGCTAAG	NA	False	NA	NA	False	AATAAA	-19	NA	111383878	111397616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111383955_111385193_111385299_111387932_111388018_111388496_111388913_111389826_111390482_111391596_111391709_111391927_111392051_111392332_111392434_111392565_111392647_111394353_111394469_111394891_111395012_111395090_111395244_111395848_111395971_111397102
transcript_32454.known	chr12	+	774	2	FSM	ENSMUSG00000021280.10	ENSMUST00000223369.2	774	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATGTGAATTAAAATAG	NA	False	NA	NA	False	NA	NA	NA	111395687	111397593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111395971_111397102
transcript_32455.known	chr12	+	3762	12	FSM	ENSMUSG00000021281.16	ENSMUST00000102745.10	3762	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.24896670488236	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGAGTGGTTTATTTGG	365	False	NA	NA	False	TATAAA	-18	NA	111408902	111421452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111409118_111411362_111411718_111411940_111412572_111414416_111414532_111414680_111414804_111414972_111415074_111415664_111415764_111416199_111416324_111417116_111417240_111417476_111417633_111417784_111417907_111419854
transcript_3246.known	chr1	+	2925	12	FSM	ENSMUSG00000026251.14	ENSMUST00000073252.9	2925	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.67628081041689	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTTGTGGTAATTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	87118358	87127792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87118465_87118696_87118852_87119241_87119287_87119935_87120046_87120207_87120364_87120567_87120678_87122521_87122723_87123206_87123319_87123404_87123520_87125004_87125210_87125296_87125416_87126301
transcript_32460.known	chr12	+	4050	12	FSM	ENSMUSG00000021282.18	ENSMUST00000166123.9	4050	12	0	0	0	0	multi-exon	FALSE	canonical	3	1736	junction_1	190.905151474506	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCACTTGGGGTTTTTTTT	NA	False	NA	12	True	AAAACA	-18	NA	111504449	111513186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111504674_111504788_111504983_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
transcript_32466.known	chr12	+	3547	12	FSM	ENSMUSG00000021282.18	ENSMUST00000222375.2	3547	12	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	667.668312267859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCTGTCTGCTTTAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	111504649	111513022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111504674_111504788_111504983_111505980_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
transcript_3248.known	chr1	+	3473	8	FSM	ENSMUSG00000026254.18	ENSMUST00000113235.8	3473	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	1022.13094732005	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGAGTCTCCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	87141635	87168210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87160124_87160204_87165567
transcript_32487.nic	chr12	+	1132	7	ISM	ENSMUSG00000021282.18	ENSMUST00000166123.9	4050	12	-29	5009	-29	0	5prime_fragment	FALSE	canonical	3	1736	junction_1	237.160107662875	1066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAATAGAAAGGGCAA	NA	False	NA	NA	False	NA	NA	NA	111504420	111508177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_111504674_111504788_111504983_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139
transcript_32512.known	chr12	+	2807	18	FSM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_16	68.4977205187368	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGTGTTTTTCTAAG	1264	False	NA	89	True	TTTAAA	-20	NA	111541484	111622594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
transcript_32514.nnic	chr12	+	2992	18	NNC	ENSMUSG00000007411.17	novel	2807	18	NA	NA	-51	120	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_11	112.928461294052	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTGTCTTGTTTCCAT	685	False	NA	28	True	ATTAAA	-14	NA	111540905	111622248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595443_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
transcript_32515.nnic	chr12	+	3399	18	NNC	ENSMUSG00000007411.17	novel	2807	18	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_11	112.928461294052	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGCACTGTCTCCTAC	685	False	NA	NA	False	ATTAAA	-21	NA	111540905	111622655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595443_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
transcript_32520.nnic	chr12	+	3404	17	NIC	ENSMUSG00000007411.17	novel	2807	18	NA	NA	-51	2	combination_of_known_splicesites	FALSE	canonical	3	38	junction_16	115.676272415738	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCACTGTCTCCTACTG	685	False	NA	NA	False	ATTAAA	-23	NA	111540905	111622657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111621703
transcript_32522.known	chr12	+	3365	17	FSM	ENSMUSG00000007411.17	ENSMUST00000084953.13	3365	17	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_15	118.351634441608	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGCACTGTCTCCTAC	740	False	NA	NA	False	ATTAAA	-21	NA	111540960	111622655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111619823_111619869_111621703
transcript_32538.known	chr12	+	3321	16	FSM	ENSMUSG00000007411.17	ENSMUST00000075281.8	3321	16	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_15	105.235101875119	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCTTGCACTGTCTCC	736	False	NA	NA	False	ATTAAA	-18	NA	111540956	111622652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111621703
transcript_3256.known	chr1	+	1807	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGGGTTGTCTGAATG	NA	False	NA	NA	False	ATTAAA	-14	NA	87141635	87156578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
transcript_3258.known	chr1	+	3394	7	FSM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_6	847.519796556727	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGAGTCTCCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	87141635	87168210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
transcript_32583.known	chr12	-	1472	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	0	0	0	0	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	7135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638772	111635794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
transcript_3261.known	chr1	+	1119	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_1	458.210801802935	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	False	NA	15	True	AATAAA	-15	NA	87142007	87155786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
transcript_32633.known	chr12	-	719	3	FSM	ENSMUSG00000001270.10	ENSMUST00000222513.2	719	3	0	0	0	0	multi-exon	FALSE	canonical	3	7551	junction_1	185	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGGGGACACACTGCTGCA	NA	False	NA	NA	False	NA	NA	NA	111638717	111637556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111638014_111638199_111638408_111638663
transcript_32635.known	chr12	-	2839	2	FSM	ENSMUSG00000001270.10	ENSMUST00000222705.2	2839	2	0	0	0	0	multi-exon	FALSE	canonical	3	8476	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638716	111635794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111636176_111636258
transcript_32636.known	chr12	+	2131	4	FSM	ENSMUSG00000060950.13	ENSMUST00000168338.2	2131	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	100.883871632464	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644538	111650336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111644735_111645036_111645397_111647235_111647503_111649028
transcript_32637.known	chr12	+	2433	3	FSM	ENSMUSG00000060950.13	ENSMUST00000084947.10	2433	3	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	1	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644538	111650336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111645397_111647235_111647503_111649028
transcript_32640.known	chr12	-	2139	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCCCCTGTGCTGTTC	NA	False	NA	NA	False	CATAAA	-20	NA	111679691	111675921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111677847_111679477
transcript_32643.known	chr12	+	1065	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_3	10.0343161201947	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTGCAAGTTGAGAATAA	1541	False	NA	NA	False	TTTAAA	-1	NA	111679694	111700654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
transcript_32647.known	chr12	+	3107	3	FSM	ENSMUSG00000037787.15	ENSMUST00000162316.2	3107	3	0	0	0	0	multi-exon	FALSE	canonical	3	509	junction_1	5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAAGAAGAGT	1566	False	NA	NA	False	NA	NA	NA	111679719	111693549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111679853_111689045_111689244_111690773
transcript_32648.nic	chr12	+	355	2	ISM	ENSMUSG00000037787.15	ENSMUST00000162316.2	3107	3	-23	4305	2	27	5prime_fragment	FALSE	canonical	3	509	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTGGGCTTCAGACCG	1543	False	NA	NA	False	NA	NA	NA	111679696	111689244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_111679853_111689045
transcript_32658.nnic	chr12	+	2464	17	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	22	junction_14	42.3655502000151	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725282	111773145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111760082_111760134_111761981_111762113_111772441_111772509_111772748
transcript_32665.nnic	chr12	+	2413	16	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	52	junction_13	31.1312633144811	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725282	111773145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111761981_111762113_111772441_111772509_111772748
transcript_32666.known	chr12	+	2504	16	FSM	ENSMUSG00000021288.20	ENSMUST00000084941.12	2504	16	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_13	35.2026514152935	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGAGTGAGTGCGTGCCA	NA	False	NA	NA	False	ATTAAA	-18	NA	111725282	111773209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111761981_111762113_111772441_111772509_111772748
transcript_32669.nnic	chr12	+	2389	16	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	51	junction_12	36.3315595897317	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725282	111773145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755894_111761981_111762113_111772441_111772509_111772748
transcript_3267.known	chr1	+	1125	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113232.8	1125	6	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_1	545.938677875089	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCACCTTTGCATGTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	87141635	87154329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
transcript_32670.known	chr12	+	2268	16	FSM	ENSMUSG00000021288.20	ENSMUST00000122300.8	2268	16	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_13	39.7419453754119	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTTCATAACTATTTTT	NA	False	NA	NA	False	ATTAAA	-34	NA	111725446	111773161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755921_111761981_111762113_111772441_111772509_111772748
transcript_32672.nnic	chr12	+	2428	15	NIC	ENSMUSG00000021288.20	novel	2261	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	31	junction_13	41.916157811926	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGTGTCTTGTGTCTGT	NA	False	NA	9	True	AATAAA	-13	NA	111725282	111761329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111760082_111760134_111760770
transcript_32673.nic	chr12	+	2282	15	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	27	junction_13	36.2404808050278	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725282	111773145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111772441_111772509_111772748
transcript_32674.nic	chr12	+	2455	15	NIC	ENSMUSG00000021288.20	novel	2261	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	16	junction_13	44.3616859877245	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGTGTCTTGTGTCTGT	NA	False	NA	9	True	AATAAA	-13	NA	111725282	111761329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111760082_111760134_111760770
transcript_32675.nnic	chr12	+	2309	15	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_13	40.1888399576656	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725282	111773145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111772441_111772509_111772748
transcript_32676.nnic	chr12	+	2404	15	NIC	ENSMUSG00000021288.20	novel	2261	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	31	junction_13	45.6198242800971	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGTGTCTTGTGTCTGT	NA	False	NA	9	True	AATAAA	-13	NA	111725282	111761329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755894_111760082_111760134_111760770
transcript_32677.nic	chr12	+	2258	15	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	27	junction_13	41.0915478672007	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725282	111773145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755894_111772441_111772509_111772748
transcript_32689.nic	chr12	-	2464	8	NIC	ENSMUSG00000021287.13	novel	2422	8	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	27.3488424558238	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAACACTTGCAAATTATT	NA	False	NA	NA	False	AATAAA	-22	NA	111780337	111769626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776379_111777291_111777430_111778494_111778654_111780258
transcript_3269.known	chr1	+	1569	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113230.8	1569	6	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_1	501.781067797501	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTGACCCCACCTTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	87141660	87154322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
transcript_32692.known	chr12	-	2422	8	FSM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	12.8809303758284	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAACACTTGCAAATTATT	NA	False	NA	NA	False	AATAAA	-22	NA	111780275	111769626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494_111778654_111780258
transcript_32699.known	chr12	-	2300	7	FSM	ENSMUSG00000021287.13	ENSMUST00000127281.8	2300	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	32.0572404717977	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACACTTGCAAATTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	111778635	111769625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111771107_111771177_111771225_111771348_111771474_111774266_111774422_111776185_111776399_111777291_111777430_111778494
transcript_327.known	chr1	-	5428	1	FSM	ENSMUSG00000090031.3	ENSMUST00000191825.2	5428	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCCTGAAATCATTTTAT	NA	False	NA	NA	False	AATAAA	-18	NA	6285517	6280089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_6280100_6285500
transcript_32700.known	chr12	+	4089	16	FSM	ENSMUSG00000021288.20	ENSMUST00000239017.2	4089	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	55.4193708613393	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCAGAGCTGTTTTATG	NA	False	NA	NA	False	AATAAA	-30	NA	111725282	111769674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111761981_111762113_111766777_111766845_111767628
transcript_32701.known	chr12	-	4389	17	FSM	ENSMUSG00000021285.16	ENSMUST00000054815.15	4389	17	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	8.14108983797624	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGAGTCCTTTGAGTCTT	1113	False	NA	0	True	AATAAA	-19	NA	111874544	111794890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111795818_111796688_111796889_111797893_111798061_111798736_111798871_111798942_111799081_111799561_111800329_111801235_111801738_111802046_111802211_111805034_111805216_111807390_111807532_111809978_111810176_111811255_111811431_111812761_111812864_111824643_111824721_111832848_111832969_111838719_111838868_111874295
transcript_32707.known	chr12	+	1265	8	FSM	ENSMUSG00000021286.9	ENSMUST00000221375.2	1265	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	290.764860465691	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAGTGTATAATTAAAA	NA	False	NA	-19	True	ATTAAA	-22	NA	111780668	111794785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792009_111792067_111793976_111794120_111794251
transcript_32711.known	chr12	+	1308	7	FSM	ENSMUSG00000021286.9	ENSMUST00000021714.9	1308	7	0	0	0	0	multi-exon	FALSE	canonical	3	470	junction_5	111.029525602677	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	16	True	ATTAAA	-17	NA	111780603	111794820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
transcript_32728.known	chr12	-	1662	3	FSM	ENSMUSG00000113769.2	ENSMUST00000221314.2	1662	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTTTATAAATGTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	111910918	111908424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111909646_111910318_111910432_111910590
transcript_32729.known	chr12	-	1366	3	FSM	ENSMUSG00000113769.2	ENSMUST00000221669.2	1366	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAACCATCCCGAGC	NA	False	NA	NA	False	AATAAA	-10	NA	111910909	111908780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111909646_111910318_111910501_111910590
transcript_3273.known	chr1	+	1854	4	FSM	ENSMUSG00000026255.16	ENSMUST00000027472.7	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	0.942809041582063	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGTGTGCCTTTTTGGT	1408	False	NA	NA	False	AATAAA	-25	NA	87192084	87238561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87192477_87217189_87217338_87225350_87225486_87237382
transcript_32733.known	chr12	-	612	4	FSM	ENSMUSG00000021290.7	ENSMUST00000222874.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1208.36593059479	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGCTTCCCCTGAGT	NA	False	NA	-8	True	AATAAA	-17	NA	111933328	111927809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933027
transcript_32734.known	chr12	-	366	4	FSM	ENSMUSG00000021290.7	ENSMUST00000021719.7	366	4	0	0	0	0	multi-exon	TRUE	canonical	3	2424	junction_1	129.659382828839	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	-7	True	AATAAA	-18	NA	111933411	111927808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933357
transcript_32735.known	chr12	+	4809	36	FSM	ENSMUSG00000054003.14	ENSMUST00000079009.11	4809	36	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	3.2893147974517	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTATTTTTGCTCAGAGA	NA	False	NA	NA	False	AATAAA	-24	NA	111937992	112035288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_111938297_111951432_111951540_111958895_111958994_111960141_111960364_111960877_111961001_111963220_111963302_111964231_111964397_111968157_111968259_111973945_111974011_111979699_111979755_111979915_111980001_111980875_111980934_111982291_111982397_111989675_111989774_111991095_111991228_111991942_111992109_111992208_111992273_111992344_111992409_111992686_111992732_111993528_111993583_111997621_111997739_111999112_111999221_112001015_112001117_112002787_112002962_112005737_112005850_112006858_112007072_112008095_112008186_112009119_112009381_112010719_112010876_112011233_112011305_112012589_112012700_112013389_112013487_112018301_112018441_112029934_112030054_112034036_112034110_112034612
transcript_32739.known	chr12	+	2722	15	FSM	ENSMUSG00000037686.7	ENSMUST00000079400.6	2722	15	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_3	6.52467842666814	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTGGCCTGGATGGGT	NA	False	NA	2	True	AATAAA	-16	NA	112073112	112093993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112073408_112078625_112078735_112079414_112079527_112080813_112080940_112082000_112082085_112082834_112082962_112086387_112086501_112087298_112087482_112087586_112087701_112088183_112088298_112089377_112089474_112089723_112089888_112091243_112091331_112092745_112092846_112093095
transcript_3274.known	chr1	+	4029	29	FSM	ENSMUSG00000048000.16	ENSMUST00000172794.8	4029	29	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_9	32.8746847583241	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCCGCTGTGCCAGC	NA	False	NA	NA	False	NA	NA	NA	87254750	87376867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334723_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
transcript_32756.known	chr12	+	6918	16	FSM	ENSMUSG00000021294.8	ENSMUST00000128402.3	6918	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_13	3.04776785350999	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTTCTGACTTTCCGGG	2026	False	NA	10	True	AATAAA	-19	NA	112112641	112148181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112112841_112113147_112113391_112123681_112124108_112129784_112129976_112135201_112135392_112139004_112139218_112139774_112139869_112140171_112140435_112140534_112140719_112140868_112141032_112141207_112141371_112141919_112144834_112145576_112145783_112145913_112145935_112146228_112146380_112146884
transcript_32757.known	chr12	-	2380	4	FSM	ENSMUSG00000054013.7	ENSMUST00000066791.7	2380	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.16024689946929	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGTGTGGATGAGGAG	NA	False	NA	-10	True	AATAAA	-20	NA	112477606	112466622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112468357_112469675_112469755_112470967_112471106_112477177
transcript_32758.known	chr12	+	2795	15	FSM	ENSMUSG00000037679.10	ENSMUST00000222275.2	2795	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.98591982492255	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTGGTATTTAGACCA	NA	False	NA	11	True	AATAAA	-19	NA	112571090	112581991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112571297_112571806_112571953_112572227_112572290_112572677_112572781_112573406_112573493_112573928_112574030_112574762_112574834_112574910_112575019_112575281_112575353_112576106_112576228_112576552_112576718_112576895_112576999_112577128_112577291_112577843_112578471_112581328
transcript_32759.known	chr12	+	1777	13	FSM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	10.1005362893924	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACCGAGAGGTCATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	112586478	112607773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
transcript_32762.known	chr12	+	924	4	FSM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	0	0	0	0	multi-exon	FALSE	canonical	3	1700	junction_3	44.6542271235322	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	6855	False	NA	17	True	AATAAA	-17	NA	112611112	112615579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112611519_112613271_112613467_112614258_112614416_112615413
transcript_32766.known	chr12	+	333	3	FSM	ENSMUSG00000064326.14	ENSMUST00000109755.5	333	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	805	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGCCACAGACAGCACAA	7143	False	NA	-30	True	NA	NA	NA	112611400	112615471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112611519_112614258_112614416_112615413
transcript_32767.nnic	chr12	-	2585	14	NNC	ENSMUSG00000001729.15	novel	2690	14	NA	NA	-475	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_13	94.3623257487333	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTGCTTTCTGGTGTGG	NA	False	NA	0	True	AATAAA	-19	NA	112638473	112620254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_112621212_112621560_112621664_112622935_112623024_112623210_112623426_112623501_112623631_112623701_112623828_112624100_112624170_112624831_112624898_112624979_112625112_112625562_112625711_112625983_112626096_112628613_112628743_112637949_112638089_112638301
transcript_32769.known	chr12	-	2690	14	FSM	ENSMUSG00000001729.15	ENSMUST00000001780.10	2690	14	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_13	42.5045768506691	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTGCTTTCTGGTGTGG	NA	False	NA	0	True	AATAAA	-19	NA	112640710	112620254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112621212_112621560_112621664_112622935_112623024_112623210_112623426_112623501_112623631_112623701_112623828_112624100_112624170_112624831_112624898_112624979_112625112_112625562_112625711_112625983_112626096_112628613_112628743_112637949_112638089_112640433
transcript_32770.nic	chr12	-	2600	14	NIC	ENSMUSG00000001729.15	novel	2690	14	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	3	junction_13	96.6788130843996	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTGCTTTCTGGTGTGG	NA	False	NA	0	True	AATAAA	-19	NA	112641342	112620254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_-_112621212_112621560_112621664_112622935_112623024_112623210_112623426_112623501_112623631_112623701_112623828_112624100_112624170_112624831_112624898_112624979_112625112_112625562_112625711_112625983_112626096_112628613_112628743_112637949_112638089_112641155
transcript_32775.known	chr12	+	3478	2	FSM	ENSMUSG00000037638.6	ENSMUST00000169593.2	3478	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGGCTGTGATGATTCTC	346	False	NA	NA	False	AATAAA	-16	NA	112645273	112649181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112645380_112645809
transcript_32776.known	chr12	-	2603	1	FSM	ENSMUSG00000103898.2	ENSMUST00000195528.2	2603	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTTTTGTCATGGTG	8095	False	NA	NA	False	NA	NA	NA	112660022	112657419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112657400_112660000
transcript_32777.known	chr12	+	6641	19	FSM	ENSMUSG00000072825.12	ENSMUST00000101018.11	6641	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.8627764261712	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCGCCTCGGCCCTCTTC	9013	False	NA	31	True	AATAAA	-31	NA	112688607	112713026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112688817_112691057_112691190_112697784_112697875_112698438_112698518_112698933_112698993_112699825_112699965_112701594_112701700_112701785_112702260_112702589_112703303_112703591_112703766_112704007_112704099_112704272_112705944_112707207_112707446_112709386_112709547_112709836_112709981_112710103_112710193_112710503_112710598_112710956_112711009_112711098
transcript_32778.known	chr12	+	1982	11	FSM	ENSMUSG00000052160.8	ENSMUST00000063888.5	1982	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	2.92574776766556	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTGTTCTCTCT	4280	False	NA	NA	False	AATAAA	-45	NA	112727088	112735424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112727218_112728959_112729044_112729830_112729998_112730396_112730581_112730881_112731003_112731431_112731560_112733136_112733338_112733931_112734072_112734187_112734354_112734458_112734556_112734859
transcript_3278.nic	chr1	+	3567	26	ISM	ENSMUSG00000048000.16	ENSMUST00000027475.15	5724	29	-37	8776	-32	0	5prime_fragment	FALSE	canonical	3	77	junction_9	28.9699430444728	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGTCTAACCGGCAGAA	NA	False	NA	NA	False	AGTAAA	-7	NA	87254687	87369742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334705_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732
transcript_32781.nnic	chr12	-	1418	7	NNC	ENSMUSG00000118667.1	novel	11349	7	NA	NA	6813	-9977	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.577350269189626	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGGATAAAAAACAGGAAA	NA	False	NA	NA	False	AATAGA	-34	NA	112759464	112748604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_-_112749216_112749335_112749512_112749782_112749925_112750608_112750711_112751520_112751620_112751742_112751799_112759232
transcript_32784.known	chr12	-	11349	7	FSM	ENSMUSG00000118667.1	ENSMUST00000239525.1	11349	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.687184270936277	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCCGGTTCGCCAAGG	NA	False	NA	NA	False	AATAAA	-16	NA	112766277	112738627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112749216_112749335_112749512_112749782_112749925_112750608_112750711_112751520_112751620_112751742_112751799_112766091
transcript_32787.known	chr12	+	1960	5	FSM	ENSMUSG00000037594.12	ENSMUST00000037014.11	1960	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	3.74165738677394	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTTGTTGACTCATT	3901	False	NA	17	True	ATTAAA	-19	NA	112772556	112779872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112773429_112774493_112774631_112775802_112775933_112778082_112778200_112779168
transcript_32789.known	chr12	-	2425	2	FSM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGGAGCCTTTTTTT	9646	False	NA	0	True	ATTAAA	-19	NA	112793009	112783848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112785733_112792468
transcript_32790.known	chr12	-	1994	2	FSM	ENSMUSG00000047832.10	ENSMUST00000220899.2	1994	2	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	0	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAATGTGTTAGGAGC	9612	False	NA	-8	True	ATTAAA	-11	NA	112793043	112783856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112785733_112792925
transcript_32794.known	chr12	-	734	5	FSM	ENSMUSG00000002804.5	ENSMUST00000002881.5	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	82.3995600716412	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATAAAGCTTGTGTAAGT	8854	False	NA	-32	True	GGGGCT	-44	NA	112905737	112898374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112898671_112901975_112902178_112902414_112902480_112902898_112902943_112905610
transcript_32795.known	chr12	-	1241	5	FSM	ENSMUSG00000002804.5	ENSMUST00000221397.2	1241	5	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_2	18.0277563773199	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGCGTAACATGAACT	8847	False	NA	NA	False	ATTAAA	-15	NA	112905744	112897910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112898671_112901975_112902214_112902414_112902480_112902898_112902943_112905610
transcript_32796.known	chr12	-	945	4	FSM	ENSMUSG00000002804.5	ENSMUST00000222793.2	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	7.71722460186015	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCTTGTGTAAGTTTTA	8884	False	NA	-28	True	NA	NA	NA	112905707	112898370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112898671_112901975_112902480_112902898_112902943_112905610
transcript_32797.known	chr12	-	355	4	FSM	ENSMUSG00000002804.5	ENSMUST00000221497.2	355	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	100.422441051125	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGATGACGCCCAGGCCT	8861	False	NA	NA	False	NA	NA	NA	112905730	112898544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112898671_112902414_112902480_112902898_112902943_112905610
transcript_3280.nic	chr1	+	3542	25	ISM	ENSMUSG00000048000.16	ENSMUST00000027475.15	5724	29	-37	9889	-32	-1113	5prime_fragment	FALSE	canonical	3	77	junction_9	29.5620522047363	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGCCAGTCTCAGGTAGG	NA	False	NA	NA	False	AATAAA	-9	NA	87254687	87368629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334705_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438
transcript_32807.known	chr12	-	2615	18	FSM	ENSMUSG00000011158.9	ENSMUST00000011302.9	2615	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	37.0119217677383	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTGTGTTTATGTGT	NA	False	NA	-3	True	NA	NA	NA	112964324	112923704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112923979_112924729_112924902_112925342_112925395_112925995_112926253_112926996_112927053_112927129_112927212_112927803_112927866_112929348_112929613_112932884_112932978_112933061_112933102_112933716_112933844_112935881_112935976_112937091_112937242_112943304_112943378_112946646_112946677_112951536_112951713_112956683_112956765_112963792
transcript_32817.known	chr12	+	1975	5	FSM	ENSMUSG00000002803.15	ENSMUST00000165079.8	1975	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	16.3152535990097	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAAGAACCAAATGTAG	NA	False	NA	NA	False	AATAAA	-9	NA	112940101	112942550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112940133_112940295_112940603_112940678_112940770_112940872_112940992_112941123
transcript_32819.known	chr12	+	724	4	FSM	ENSMUSG00000002803.15	ENSMUST00000223508.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	21.6384431561566	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAGACCCACAACATCT	NA	False	NA	NA	False	NA	NA	NA	112940565	112941612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112940603_112940678_112940770_112940872_112940992_112941135
transcript_32820.nic	chr12	+	2119	4	ISM	ENSMUSG00000002803.15	ENSMUST00000165079.8	1975	5	-5	-7	-5	7	intron_retention	FALSE	canonical	3	10	junction_1	18.3726850393609	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAAATGTAGATAAGTG	NA	False	NA	NA	False	AATAAA	-16	NA	112940096	112942557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr12_+_112940133_112940295_112940603_112940678_112940770_112940872
transcript_32822.known	chr12	+	691	3	FSM	ENSMUSG00000002803.15	ENSMUST00000223368.2	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	3.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGGGAAGTCATTGAT	NA	False	NA	NA	False	NA	NA	NA	112940444	112941314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112940603_112940678_112940770_112940872
transcript_32823.known	chr12	+	800	3	FSM	ENSMUSG00000002803.15	ENSMUST00000223287.2	800	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	22	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGGAGATCATTGTGAC	NA	False	NA	NA	False	NA	NA	NA	112940186	112941388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112940603_112940872_112940992_112941123
transcript_32824.known	chr12	-	687	3	FSM	ENSMUSG00000011158.9	ENSMUST00000222247.2	687	3	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	19.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTATGGTTCAGAGGTTTG	NA	False	NA	NA	False	NA	NA	NA	112964016	112951330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_112951713_112956683_112956765_112963792
transcript_32826.known	chr12	+	644	2	FSM	ENSMUSG00000002803.15	ENSMUST00000222209.2	644	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGACACAGTGCTTGCCAC	NA	False	NA	NA	False	NA	NA	NA	112940240	112941154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112940603_112940872
transcript_32833.known	chr12	+	3223	24	FSM	ENSMUSG00000021143.11	ENSMUST00000223502.2	3223	24	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_13	23.2409910997097	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGATCTTTCTAATGCTC	1379	False	NA	14	True	AATAAA	-30	NA	112978127	113035758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_112978303_113007845_113007934_113009097_113009188_113010648_113010775_113013426_113013590_113014136_113014211_113014500_113014582_113015850_113015911_113020429_113020588_113023342_113023434_113023702_113023781_113024248_113024392_113024692_113024832_113025259_113025365_113025468_113025576_113026066_113026222_113026951_113027063_113027449_113027559_113031696_113031740_113032599_113032643_113032901_113033044_113033676_113033904_113034287_113034402_113035157
transcript_32839.known	chr12	+	2789	20	FSM	ENSMUSG00000021144.15	ENSMUST00000109727.9	2789	20	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	117.588629860953	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAAGCCCTTCTGCGTCTT	9323	False	NA	23	True	ATTAAA	-40	NA	113061897	113100825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_113062066_113075765_113075834_113080607_113080702_113083830_113083882_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
transcript_32843.nnic	chr12	+	2744	18	NNC	ENSMUSG00000021144.15	novel	717	3	NA	NA	-15960	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	148.463922661972	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAATCTCATAAA	4171	False	NA	-9	True	ATTAAA	-8	NA	113078991	113100793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_113079266_113080607_113080702_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
transcript_32844.known	chr12	+	2775	20	FSM	ENSMUSG00000021144.15	ENSMUST00000109726.8	2775	20	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_16	163.105730200924	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCCCTTCTGCGTCTTT	9323	False	NA	24	True	ATTAAA	-41	NA	113061897	113100826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_113062066_113075765_113075834_113080607_113080702_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113097160_113097197_113099416_113099449_113099900_113100053_113100137
transcript_32845.known	chr12	+	1439	7	FSM	ENSMUSG00000006356.11	ENSMUST00000084882.9	1439	7	0	0	0	0	multi-exon	FALSE	canonical	3	743	junction_5	14.1745076340121	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTGTCGTGTGTGTG	5622	False	NA	30	True	AATAAA	-23	NA	113103855	113109126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
transcript_32847.nnic	chr12	+	480	6	NNC	ENSMUSG00000006360.12	novel	445	5	NA	NA	-214	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	168.854256683093	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTGTTTTTGTCTGCT	NA	False	NA	15	True	AATAAA	-15	NA	113115417	113117499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_113115521_113115701_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
transcript_32848.known	chr12	+	445	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_4	13.838352503098	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTGTGTTTTTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	113115631	113117497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
transcript_3285.known	chr1	+	2765	22	FSM	ENSMUSG00000048000.16	ENSMUST00000173173.8	2765	22	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_11	42.804729854996	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAAGGAATTGGAGCTGCA	NA	False	NA	33	True	AAGAAA	-6	NA	87254787	87361521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334723_87334924_87335014_87335178_87335259_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401
transcript_32850.nnic	chr12	+	2489	8	NNC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	71.3030325370499	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTCGCTGTCTCTGAAA	NA	False	NA	NA	False	TATAAA	-11	NA	113120040	113128164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121149_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
transcript_32851.known	chr12	+	2441	8	FSM	ENSMUSG00000037466.14	ENSMUST00000049271.13	2441	8	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_3	28.4088230043027	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTCGCTGTCTCTGAAA	NA	False	NA	NA	False	TATAAA	-11	NA	113120040	113128164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
transcript_32855.nnic	chr12	+	965	6	NNC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	-43	1205	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_5	67.517108942845	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTGGTGGCGCATGCCT	NA	False	NA	NA	False	NA	NA	NA	113119997	113122414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113122174
transcript_32861.known	chr12	+	1574	2	FSM	ENSMUSG00000049036.8	ENSMUST00000058491.8	1574	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGCTATTATTCCTGTC	852	False	NA	19	True	TTTAAA	-29	NA	113149549	113153143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_113149579_113151598
transcript_32863.known	chr12	+	1958	3	FSM	ENSMUSG00000042063.12	ENSMUST00000073551.6	1958	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	2	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTGTGTAATGTCCT	NA	False	NA	17	True	NA	NA	NA	116011343	116024212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_116011487_116018341_116018469_116022524
transcript_32866.known	chr12	-	3721	22	FSM	ENSMUSG00000042050.9	ENSMUST00000039349.8	3721	22	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_13	5.74791690552625	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATAATAGGGGCTTACTA	NA	False	NA	NA	False	AGTAAA	-17	NA	116226642	116170670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_116171404_116175344_116175569_116176993_116177126_116177301_116177402_116180100_116180162_116181723_116181776_116182236_116182299_116182400_116182515_116188506_116188670_116189584_116189758_116193200_116193331_116195308_116195398_116196214_116196327_116196936_116197067_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219450_116219872_116221040_116221095_116226470
transcript_32871.known	chr12	-	1404	3	FSM	ENSMUSG00000042050.9	ENSMUST00000221029.2	1404	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAGTATTAGTTTTATT	NA	False	NA	NA	False	AATAAA	-32	NA	116226606	116218657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_116219872_116221040_116221095_116226470
transcript_32877.known	chr12	+	5560	22	FSM	ENSMUSG00000021171.9	ENSMUST00000100986.4	5560	22	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_13	20.3537869692824	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTAATATGTTTTTTGTT	NA	False	NA	5	True	AATAAA	-18	NA	116244815	116336711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_116245293_116281449_116281492_116282423_116282559_116284746_116284824_116287459_116287533_116287740_116287831_116297820_116297877_116303166_116303288_116305695_116305873_116307057_116307141_116310123_116310173_116311345_116311436_116311838_116311935_116320731_116320807_116321467_116321555_116327014_116327165_116329174_116329549_116330549_116330649_116331327_116331460_116332355_116332462_116333631_116333682_116333790
transcript_32882.known	chr12	+	4684	29	FSM	ENSMUSG00000042029.8	ENSMUST00000084828.5	4684	29	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	40.0130559050061	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCTTGTTTAAAAGTGAC	NA	False	NA	NA	False	TATAAA	-30	NA	116369021	116425231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_116369082_116369321_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_32892.nnic	chr12	+	3832	29	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-52	-934	combination_of_known_splicesites	FALSE	canonical	3	24	junction_1	53.2768089073186	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCTTTTGTATATTG	NA	False	NA	7	True	AATAGA	-24	NA	116368969	116424297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_116369112_116369321_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_32900.nic	chr12	+	3632	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-58	-934	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	42.7865791811485	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCTTTTGTATATTG	NA	False	NA	7	True	AATAGA	-24	NA	116368963	116424297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_32901.nic	chr12	+	4016	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-58	-550	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	42.7865791811485	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCACTTCATCAAAATAT	NA	False	NA	NA	False	NA	NA	NA	116368963	116424681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_32902.nic	chr12	+	4287	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-58	-279	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	42.7865791811485	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAAGGCCCAAAAGCCAA	NA	False	NA	NA	False	NA	NA	NA	116368963	116424952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_32904.nic	chr12	+	6481	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-58	-205	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	42.7865791811485	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAACTGAGTGCCAAGAA	NA	False	NA	10	True	AATAAA	-15	NA	116368963	116427146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_32907.nic	chr12	+	4048	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-58	-934	intron_retention	FALSE	canonical	3	183	junction_1	32.2243081487453	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCTTTTGTATATTG	NA	False	NA	7	True	AATAGA	-24	NA	116368963	116424297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_32908.nic	chr12	+	4703	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-58	-279	intron_retention	FALSE	canonical	3	183	junction_1	32.2243081487453	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAAGGCCCAAAAGCCAA	NA	False	NA	NA	False	NA	NA	NA	116368963	116424952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_3291.nic	chr1	+	2568	20	ISM	ENSMUSG00000048000.16	ENSMUST00000027475.15	5724	29	-37	25609	-32	0	5prime_fragment	FALSE	canonical	3	77	junction_9	28.3425817288788	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGACGGGAAGAAGAGGA	NA	False	NA	102	True	AAGAAA	-3	NA	87254687	87352909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334705_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786
transcript_32912.nic	chr12	+	3656	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-52	-934	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	49.3771077062245	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCTTTTGTATATTG	NA	False	NA	7	True	AATAGA	-24	NA	116368969	116424297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_116369112_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_32913.nic	chr12	+	4311	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-52	-279	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	49.3771077062245	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAAGGCCCAAAAGCCAA	NA	False	NA	NA	False	NA	NA	NA	116368969	116424952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_116369112_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_32924.nic	chr12	+	3341	26	NIC	ENSMUSG00000041992.10	novel	2677	18	NA	NA	-52	-129	combination_of_known_junctions	FALSE	canonical	3	19	junction_15	5.78632871516992	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTTGCATCCACAATCA	NA	False	NA	NA	False	AAGAAA	-14	NA	117497455	117720335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_117497854_117539174_117539226_117541240_117541348_117545313_117545436_117547662_117547832_117558860_117558928_117577000_117577050_117610663_117610738_117621897_117622024_117652298_117652418_117652882_117652972_117673003_117673083_117677839_117677985_117679041_117679140_117681936_117681968_117682853_117682933_117684976_117685127_117689685_117689784_117692391_117692515_117694274_117694454_117703361_117703453_117706585_117706637_117707907_117707996_117712120_117712186_117717156_117717212_117719697
transcript_32925.nic	chr12	+	3470	26	NIC	ENSMUSG00000041992.10	novel	2677	18	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_15	5.78632871516992	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAACTGTCTTTACATAT	NA	False	NA	NA	False	NA	NA	NA	117497455	117720464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_117497854_117539174_117539226_117541240_117541348_117545313_117545436_117547662_117547832_117558860_117558928_117577000_117577050_117610663_117610738_117621897_117622024_117652298_117652418_117652882_117652972_117673003_117673083_117677839_117677985_117679041_117679140_117681936_117681968_117682853_117682933_117684976_117685127_117689685_117689784_117692391_117692515_117694274_117694454_117703361_117703453_117706585_117706637_117707907_117707996_117712120_117712186_117717156_117717212_117719697
transcript_32927.nic	chr12	+	3881	26	NIC	ENSMUSG00000041992.10	novel	2677	18	NA	NA	-52	411	combination_of_known_junctions	FALSE	canonical	3	19	junction_15	5.78632871516992	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACCTCTTGGAATTCTC	NA	False	NA	NA	False	TATAAA	-20	NA	117497455	117720875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_117497854_117539174_117539226_117541240_117541348_117545313_117545436_117547662_117547832_117558860_117558928_117577000_117577050_117610663_117610738_117621897_117622024_117652298_117652418_117652882_117652972_117673003_117673083_117677839_117677985_117679041_117679140_117681936_117681968_117682853_117682933_117684976_117685127_117689685_117689784_117692391_117692515_117694274_117694454_117703361_117703453_117706585_117706637_117707907_117707996_117712120_117712186_117717156_117717212_117719697
transcript_32928.nic	chr12	+	3965	26	NIC	ENSMUSG00000041992.10	novel	2677	18	NA	NA	-52	495	combination_of_known_junctions	FALSE	canonical	3	19	junction_15	5.78632871516992	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCTCTCCCATGATCT	NA	False	NA	NA	False	TTTAAA	-13	NA	117497455	117720959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_117497854_117539174_117539226_117541240_117541348_117545313_117545436_117547662_117547832_117558860_117558928_117577000_117577050_117610663_117610738_117621897_117622024_117652298_117652418_117652882_117652972_117673003_117673083_117677839_117677985_117679041_117679140_117681936_117681968_117682853_117682933_117684976_117685127_117689685_117689784_117692391_117692515_117694274_117694454_117703361_117703453_117706585_117706637_117707907_117707996_117712120_117712186_117717156_117717212_117719697
transcript_32930.nic	chr12	+	6478	26	NIC	ENSMUSG00000041992.10	novel	2677	18	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_15	5.78632871516992	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTCCTGCCTAGACTCTT	NA	False	NA	NA	False	AATATA	-18	NA	117497455	117723472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_117497854_117539174_117539226_117541240_117541348_117545313_117545436_117547662_117547832_117558860_117558928_117577000_117577050_117610663_117610738_117621897_117622024_117652298_117652418_117652882_117652972_117673003_117673083_117677839_117677985_117679041_117679140_117681936_117681968_117682853_117682933_117684976_117685127_117689685_117689784_117692391_117692515_117694274_117694454_117703361_117703453_117706585_117706637_117707907_117707996_117712120_117712186_117717156_117717212_117719697
transcript_32934.known	chr12	+	1078	9	FSM	ENSMUSG00000041992.10	ENSMUST00000220781.2	1078	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	5.37209223673607	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAGAAAAAAAAGAATCGGA	NA	False	NA	NA	False	NA	NA	NA	117497507	117621990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_117497854_117539174_117539226_117541240_117541348_117545313_117545436_117547662_117547832_117558860_117558928_117577000_117577050_117610663_117610738_117621897
transcript_32939.nnic	chr12	+	3103	11	NNC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	75.8209074068624	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGTCACCTGTCTGT	NA	False	NA	14	True	AATAAA	-14	NA	117807264	117842441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_117807693_117812532_117812694_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
transcript_32940.nnic	chr12	+	2769	11	NNC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	75.7063405534834	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGTCACCTGTCTGT	NA	False	NA	14	True	AATAAA	-14	NA	117807595	117842441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr12_+_117807693_117812532_117812694_117828764_117828900_117833743_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
transcript_32949.known	chr12	+	2957	10	FSM	ENSMUSG00000021175.16	ENSMUST00000021592.16	2957	10	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	34.4673758792282	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGTCACCTGTCTGT	NA	False	NA	14	True	AATAAA	-14	NA	117807249	117842441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_+_117807693_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
transcript_32952.nic	chr12	+	3013	10	NIC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_2	33.9643967547428	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGTCACCTGTCTGT	NA	False	NA	14	True	AATAAA	-14	NA	117807190	117842441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr12_+_117807693_117828764_117828900_117833743_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
transcript_32959.known	chr12	-	2677	6	FSM	ENSMUSG00000025323.11	ENSMUST00000222314.2	2677	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	4.07921561087423	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATACTGGAAACAGAAAAGT	NA	False	NA	NA	False	AAAAAG	-9	NA	118265103	118201688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr12_-_118202130_118218144_118218345_118225461_118225691_118262372_118263928_118264433_118264544_118264961
transcript_32965.known	chr13	+	593	5	FSM	ENSMUSG00000097709.9	ENSMUST00000180567.8	593	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.79021822544144	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528302	3542406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_3528353_3529521_3529575_3529908_3530002_3535048_3535221_3542181
transcript_32967.known	chr13	+	670	4	FSM	ENSMUSG00000097709.9	ENSMUST00000191585.7	670	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	5.24933858267454	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCCCTCTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	3528245	3539283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3538985
transcript_32968.nic	chr13	+	665	4	NIC	ENSMUSG00000097709.9	novel	593	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	13.1993265821489	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528233	3542406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_3528391_3529908_3530002_3535030_3535221_3542181
transcript_32969.known	chr13	+	630	4	FSM	ENSMUSG00000097709.9	ENSMUST00000186610.7	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	9.84321537348893	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGTCCATATGGCTTC	NA	False	NA	NA	False	NA	NA	NA	3528303	3539263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_3528391_3529908_3530002_3535048_3535221_3538985
transcript_32980.known	chr13	+	4303	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	0	0	0	0	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	3680	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTGCTTTTTTCTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	3588062	3617871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
transcript_3299.known	chr1	+	3015	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174583.8	3015	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	78.7922726047562	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCATTTCCTCGGATTAA	NA	False	NA	NA	False	NA	NA	NA	87254751	87285506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
transcript_33.known	ERCC-00092	+	1108	1	FSM	ERCC-00092A	DQ459425	1108	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00092_+_0_1100
transcript_330.known	chr1	+	5232	6	FSM	ENSMUSG00000051285.18	ENSMUST00000061280.17	5232	6	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	17.1650808329003	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTTTTGAGGTGTTCT	NA	False	NA	5	True	NA	NA	NA	7159143	7243852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_7159441_7190417_7190840_7217860_7217964_7231115_7231288_7233471_7233596_7239738
transcript_33006.known	chr13	+	4453	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCGAGTTCGAGGATTTG	NA	False	NA	NA	False	AATAAA	-18	NA	3684031	3703822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
transcript_33009.known	chr13	-	2680	12	FSM	ENSMUSG00000021215.16	ENSMUST00000091853.12	2680	12	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_9	26.5501241222916	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTTCCTCCTAATTGT	NA	False	NA	NA	False	TTTAAA	-15	NA	3968220	3933332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3957796_3957857_3962867_3962935_3967937
transcript_3301.known	chr1	-	2746	13	FSM	ENSMUSG00000026259.15	ENSMUST00000027477.15	2746	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.91578004149024	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGGTAGAGACCTATTT	NA	False	NA	NA	False	NA	NA	NA	87438084	87404555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_87405467_87406824_87406930_87407558_87407639_87408308_87408465_87408837_87409002_87410344_87410435_87412320_87412396_87413877_87414008_87415520_87415674_87417305_87417467_87430987_87431296_87436966_87437110_87437814
transcript_33011.known	chr13	-	3871	10	FSM	ENSMUSG00000021215.16	ENSMUST00000099946.6	3871	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	50.6888353061239	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCAGCATTTCTGTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	3943578	3932017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3943292
transcript_33014.known	chr13	-	569	1	FSM	ENSMUSG00000021215.16	ENSMUST00000222017.2	569	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAGAAAAATATTT	NA	False	NA	NA	False	AAGAAA	-3	NA	3943543	3942974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_3943000_3943500
transcript_33015.known	chr13	-	597	2	FSM	ENSMUSG00000021215.16	ENSMUST00000223258.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTCTGGACTACTCTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	3968178	3967308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_3967665_3967937
transcript_33018.known	chr13	+	1262	9	FSM	ENSMUSG00000021213.13	ENSMUST00000021634.4	1262	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.98956518577535	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATATTTTCTTTGTTT	7357	False	NA	NA	False	AATAAA	-17	NA	4241148	4255595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_4241310_4244032_4244201_4244675_4244793_4246431_4246510_4246987_4247111_4247799_4247910_4248476_4248643_4253365_4253449_4255339
transcript_33019.known	chr13	-	3463	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACTGTCTATACTGTGA	NA	False	NA	NA	False	NA	NA	NA	4659173	4640748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
transcript_33023.known	chr13	+	1115	5	FSM	ENSMUSG00000000078.8	ENSMUST00000222857.2	1115	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	94.5119040121402	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCTGAAGGAGCAGAGGG	NA	False	NA	NA	False	NA	NA	NA	5911539	5917274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_5911842_5913556_5913625_5914766_5915344_5916637_5916762_5917230
transcript_33024.known	chr13	+	4225	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGCCTGATTGTTTTT	NA	False	NA	8	True	CATAAA	-18	NA	5911480	5920393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
transcript_33034.known	chr13	+	3906	27	FSM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	134.848435629472	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGTTGTTACCTCAGG	NA	False	NA	NA	False	NA	NA	NA	6598186	6630551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
transcript_33045.nic	chr13	+	3406	27	NIC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-40	-66	combination_of_known_junctions	TRUE	canonical	3	577	junction_1	112.248614598533	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGCCTCTGAAACATTAC	NA	False	NA	5	True	ATTAAA	-18	NA	6598144	6630012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
transcript_33046.nic	chr13	+	3472	27	NIC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	577	junction_1	112.248614598533	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTTTACTCATTATT	NA	False	NA	16	True	TATAAA	-17	NA	6598144	6630078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
transcript_3305.known	chr1	+	3942	23	FSM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_20	86.0654661453124	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9370	False	NA	14	True	AATAAA	-15	NA	87603960	87648224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
transcript_33065.known	chr13	+	3318	26	FSM	ENSMUSG00000021193.11	ENSMUST00000021611.10	3318	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	213.865767246654	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTTTACTCATTATT	NA	False	NA	16	True	TATAAA	-17	NA	6598184	6630078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
transcript_33085.known	chr13	-	2679	22	FSM	ENSMUSG00000021196.15	ENSMUST00000021614.14	2679	22	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_7	371.222751277127	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6698761	6631217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6643136_6643290_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
transcript_33089.nnic	chr13	-	2738	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-124	0	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_21	274.502022841759	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6686810	6631217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6686596
transcript_33091.known	chr13	-	4145	22	FSM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_15	143.890705562911	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTCAAAGATATGTGGCA	NA	False	NA	98	True	NA	NA	NA	6698813	6629803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
transcript_33117.nic	chr13	+	1504	13	NIC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-40	5343	combination_of_known_junctions	FALSE	canonical	3	577	junction_1	122.207701157588	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAAAATTTTTACAAGAAA	NA	False	NA	NA	False	NA	NA	NA	6598144	6612083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988
transcript_3312.known	chr1	+	4125	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9370	False	NA	14	True	AATAAA	-15	NA	87603960	87648224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
transcript_33137.nnic	chr13	-	4454	15	NNC	ENSMUSG00000021147.18	novel	4526	14	NA	NA	-11	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	21.7040624430223	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTACTATTATAAAGGTT	NA	False	NA	-32	True	ATTAAA	-15	NA	8921091	8853033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_8854360_8854439_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
transcript_33138.nnic	chr13	-	4454	15	NNC	ENSMUSG00000021147.18	novel	4526	14	NA	NA	-11	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	21.7040624430223	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTACTATTATAAAGGT	NA	False	NA	-33	True	ATTAAA	-14	NA	8921091	8853034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_8854310_8854388_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
transcript_33141.known	chr13	-	4526	14	FSM	ENSMUSG00000021147.18	ENSMUST00000021572.11	4526	14	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	12.9902102419544	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATTATAAAGGTTTGT	NA	False	NA	-29	True	ATTAAA	-18	NA	8921080	8853030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
transcript_33147.known	chr13	+	3027	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	0	0	0	0	multi-exon	TRUE	canonical	3	487	junction_1	56.3576747213722	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGGTAAAATACTTGT	NA	False	NA	75	True	TATAAA	-6	NA	8935536	8942487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
transcript_33149.known	chr13	-	8783	17	FSM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_6	47.6523871385264	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTTGAGCATTCTTG	NA	False	NA	NA	False	ATTAAA	-15	NA	9046119	9016366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
transcript_33150.known	chr13	-	2442	16	FSM	ENSMUSG00000021149.9	ENSMUST00000021574.8	2442	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	264.705085372802	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-41	NA	9046086	9022515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037996_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9045984
transcript_33154.nic	chr13	-	1585	14	ISM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	11	10938	11	-2652	5prime_fragment	FALSE	canonical	3	688	junction_3	36.0119966861801	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGACCCAGGATGCCCCG	NA	False	NA	53	True	AATAAA	-1	NA	9046108	9027304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
transcript_33156.nic	chr13	-	1980	14	ISM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	-529	11083	-529	-2797	5prime_fragment	FALSE	canonical	3	688	junction_3	36.0119966861801	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGAGCTAAGAACAG	NA	False	NA	-92	True	AAGAAA	-18	NA	9046648	9027449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
transcript_33159.nic	chr13	-	1417	13	ISM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	14	12197	14	-3911	5prime_fragment	FALSE	canonical	3	688	junction_2	37.4751769694139	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCAATGCTTTTTAAAT	NA	False	NA	0	True	NA	NA	NA	9046105	9028563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
transcript_33162.nic	chr13	-	1109	10	ISM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	20	18949	-13	-514	5prime_fragment	FALSE	canonical	3	710	junction_2	33.8245290496719	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAGGAAATAAAGTGAAT	NA	False	NA	NA	False	NA	NA	NA	9046099	9035315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
transcript_33164.nic	chr13	-	979	8	ISM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	20	20918	-13	-2483	5prime_fragment	FALSE	canonical	3	735	junction_3	30.69600785052	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAATCACTCATACATTAA	NA	False	NA	NA	False	NA	NA	NA	9046099	9037284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
transcript_33166.known	chr13	+	5610	18	FSM	ENSMUSG00000033499.15	ENSMUST00000188211.8	5610	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	74.6898546956926	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	9143916	9224024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_9144217_9172143_9172263_9173938_9173999_9186814_9186963_9187190_9187338_9193789_9193869_9195417_9195555_9197436_9197541_9199861_9199973_9200900_9200955_9201050_9201261_9208158_9208266_9208586_9208839_9214710_9214757_9216352_9216518_9218713_9218839_9218933_9219043_9220687
transcript_33168.known	chr13	+	5720	17	FSM	ENSMUSG00000033499.15	ENSMUST00000091829.4	5720	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	76.8002431229876	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTAAAGATTTTTTTG	NA	False	NA	11	True	ATTAAA	-19	NA	9144017	9224487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_9144217_9172143_9172263_9173938_9173999_9186814_9186963_9187190_9187338_9193789_9193869_9195417_9195555_9197436_9197541_9199861_9199973_9200900_9200955_9201050_9201261_9208158_9208266_9214710_9214757_9216352_9216518_9218713_9218839_9218933_9219043_9220687
transcript_33171.known	chr13	+	8023	37	FSM	ENSMUSG00000048264.17	ENSMUST00000174552.8	8023	37	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_2	7.00545422430901	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCAGTTTCTTAATTGATA	NA	False	NA	26	True	AATAAA	-27	NA	9326563	9718964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_9327103_9543140_9543213_9556614_9556726_9583287_9583414_9586691_9586902_9600219_9600355_9601781_9601902_9603309_9603508_9610706_9610799_9613149_9613261_9617866_9617991_9618336_9618447_9618626_9618730_9621085_9621151_9625169_9625264_9625397_9625518_9626839_9626955_9651392_9651533_9654524_9654662_9656358_9656568_9658979_9659095_9660732_9660935_9664382_9664493_9665780_9665862_9671914_9672039_9672617_9672740_9673792_9673905_9673993_9674104_9678008_9678140_9684757_9684927_9687130_9687302_9697014_9697077_9704638_9704697_9706672_9706748_9709280_9709456_9712172_9712297_9715813
transcript_33172.known	chr13	+	4024	1	FSM	ENSMUSG00000113065.2	ENSMUST00000222138.2	4024	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAGAAAAGATAGC	NA	False	NA	NA	False	AATAAA	-15	NA	9394437	9398461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_9394400_9398500
transcript_33180.known	chr13	-	3824	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110634.8	3824	15	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_14	31.2871004259139	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAGAGATTGTGGC	NA	False	NA	NA	False	NA	NA	NA	9814992	9735130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9814763
transcript_33181.known	chr13	-	4117	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110636.9	4117	15	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_14	35.3204716033877	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCAGTAAGCTGCTT	NA	False	NA	2	True	AATAAA	-22	NA	9815350	9734868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
transcript_33200.known	chr13	-	4003	14	FSM	ENSMUSG00000021156.18	ENSMUST00000110638.8	4003	14	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	41.8502543239853	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCTTGTCAGTAAGCTG	NA	False	NA	-1	True	AATAAA	-19	NA	9814524	9734871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814381
transcript_33203.known	chr13	-	3770	14	FSM	ENSMUSG00000021156.18	ENSMUST00000110637.8	3770	14	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_11	32.3144681539246	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCTTGTCAGTAAGCTG	NA	False	NA	-1	True	AATAAA	-19	NA	9814459	9734871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814381
transcript_33205.known	chr13	-	3796	14	FSM	ENSMUSG00000021156.18	ENSMUST00000062658.15	3796	14	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_13	37.5302639220559	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACTCTTGTCAGTAAGC	NA	False	NA	-3	True	AATAAA	-17	NA	9815196	9734873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9815090
transcript_33243.known	chr13	-	4924	25	FSM	ENSMUSG00000021313.17	ENSMUST00000220597.2	4924	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.41175619550812	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATTTGGAAGGCCTT	NA	False	NA	NA	False	TATAAA	-19	NA	12121831	11785925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_11787466_11794070_11794155_11799923_11800028_11805144_11805250_11807554_11807772_11809427_11809621_11814567_11814810_11816023_11816158_11816692_11816812_11825768_11825865_11839159_11839296_11842419_11842604_11844442_11844565_11848809_11848975_11865943_11866101_11868001_11868077_11883002_11883100_11884002_11884103_11894360_11894474_11897930_11898010_11900349_11900425_11905719_11905735_11933196_11933302_11960768_11960889_12121284
transcript_33247.known	chr13	-	8294	33	FSM	ENSMUSG00000021311.10	ENSMUST00000099856.6	8294	33	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	17.0824917221552	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTATGATGACTTTATA	5961	False	NA	0	True	AATAAA	-26	NA	12272981	12197597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_12201978_12202926_12203040_12204232_12204426_12205089_12205291_12208499_12208697_12210123_12210280_12212798_12212875_12213931_12214031_12215082_12215165_12219628_12219750_12220175_12220244_12227273_12227375_12227556_12227665_12230298_12230452_12231695_12231786_12236307_12236449_12237040_12237158_12240347_12240528_12242569_12242756_12245830_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256552_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262872_12264730_12264801_12265487_12265578_12268649_12268865_12272747
transcript_33260.nic	chr13	-	2583	21	ISM	ENSMUSG00000021311.10	ENSMUST00000099856.6	8294	33	-117	30000	-99	4168	5prime_fragment	FALSE	canonical	3	154	junction_1	13.4887916434349	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGAAGCCAGATTGATT	5844	False	NA	NA	False	AAAAAG	-4	NA	12273098	12227597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_12227665_12230298_12230452_12231695_12231786_12236307_12236449_12237040_12237158_12240347_12240528_12242569_12242756_12245830_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256552_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262872_12264730_12264801_12265487_12265578_12268649_12268865_12272747
transcript_33265.known	chr13	-	2920	22	FSM	ENSMUSG00000052374.17	ENSMUST00000168193.8	2920	22	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_8	24.7369837964724	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTGGAAACTTTGACAAAC	NA	False	NA	-6	True	AATAAA	-20	NA	12355605	12284320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_12284539_12285663_12285823_12287584_12287651_12289963_12290111_12291248_12291429_12292284_12292420_12293679_12293863_12295314_12295456_12297400_12297510_12303392_12303544_12305559_12305708_12306545_12306777_12309195_12309289_12311360_12311447_12315820_12315903_12319199_12319279_12321159_12321248_12323785_12323873_12324480_12324601_12325732_12325848_12355255_12355472_12355519
transcript_33266.known	chr13	-	3013	21	FSM	ENSMUSG00000052374.17	ENSMUST00000064204.14	3013	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	25.0365233209405	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGACAAACTTTATTAAG	NA	False	NA	3	True	AATAAA	-29	NA	12355641	12284311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_12284539_12285663_12285823_12287584_12287651_12289963_12290111_12291248_12291429_12292284_12292420_12293679_12293863_12295314_12295456_12297400_12297510_12303392_12303544_12305559_12305708_12306545_12306777_12309195_12309289_12311360_12311447_12315820_12315903_12319199_12319279_12321159_12321248_12323785_12323873_12324480_12324601_12325732_12325848_12355255
transcript_33269.known	chr13	+	6780	45	FSM	ENSMUSG00000050244.10	ENSMUST00000059270.10	6780	45	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_14	60.7064258923889	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGGTATTTGTCTTTA	1714	False	NA	5	True	AGTAAA	-19	NA	12410251	12453774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_12410352_12410620_12410795_12411302_12411520_12413783_12413926_12415930_12416033_12416330_12416472_12417594_12417807_12418025_12418160_12419768_12419872_12420903_12421015_12421405_12421524_12422397_12422506_12423534_12423631_12424089_12424179_12425276_12425489_12426100_12426223_12426925_12427118_12428105_12428290_12428392_12428530_12429253_12429447_12430297_12430468_12430831_12430991_12432340_12432584_12432978_12433111_12435922_12436027_12436158_12436303_12436921_12437041_12437121_12437244_12438514_12438644_12439500_12439732_12441034_12441162_12441642_12441804_12444647_12444695_12445021_12445146_12445791_12445933_12446560_12446854_12447509_12447661_12448492_12448652_12448797_12448933_12449067_12449173_12449254_12449424_12449927_12450083_12450550_12450710_12452714_12452824_12453469
transcript_33274.nic	chr13	+	3708	25	ISM	ENSMUSG00000050244.10	ENSMUST00000059270.10	6780	45	-38	17773	-38	7378	5prime_fragment	FALSE	canonical	3	181	junction_14	44.5825545103314	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGAGAAGGCAGAAAATGCAA	1676	False	NA	NA	False	GATAAA	-29	NA	12410213	12436001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_12410352_12410620_12410795_12411302_12411520_12413783_12413926_12415930_12416033_12416330_12416472_12417594_12417807_12418025_12418160_12419768_12419872_12420903_12421015_12421405_12421524_12422397_12422506_12423534_12423631_12424089_12424179_12425276_12425489_12426100_12426223_12426925_12427118_12428105_12428290_12428392_12428530_12429253_12429447_12430297_12430468_12430831_12430991_12432340_12432584_12432978_12433111_12435922
transcript_33276.nic	chr13	+	3095	21	ISM	ENSMUSG00000050244.10	ENSMUST00000059270.10	6780	45	-38	23307	-38	1844	5prime_fragment	FALSE	canonical	3	181	junction_14	45.6127997386698	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGACCACTGTCAAAGAAG	1676	False	NA	NA	False	NA	NA	NA	12410213	12430467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_12410352_12410620_12410795_12411302_12411520_12413783_12413926_12415930_12416033_12416330_12416472_12417594_12417807_12418025_12418160_12419768_12419872_12420903_12421015_12421405_12421524_12422397_12422506_12423534_12423631_12424089_12424179_12425276_12425489_12426100_12426223_12426925_12427118_12428105_12428290_12428392_12428530_12429253_12429447_12430297
transcript_33282.known	chr13	-	1148	10	FSM	ENSMUSG00000057554.14	ENSMUST00000144283.2	1148	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	11.9948548640605	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACCATGACTGCCAAAACC	NA	False	NA	-65	True	NA	NA	NA	12476376	12455725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468138_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
transcript_33284.known	chr13	-	2736	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	22.4152725712726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGGAATGAATACTCTC	NA	False	NA	-20	True	ATTAAA	-11	NA	12476384	12454304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476121
transcript_33285.known	chr13	-	2792	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099821.10	2792	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	18.5718491337539	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATACTCTCTGGAATA	NA	False	NA	-13	True	ATTAAA	-18	NA	12476619	12454297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
transcript_33291.nic	chr13	+	1297	9	ISM	ENSMUSG00000050244.10	ENSMUST00000059270.10	6780	45	-38	33969	-38	-1207	5prime_fragment	FALSE	canonical	3	329	junction_6	23.2886104136765	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACCACTTAGAAGAAATAC	1676	False	NA	NA	False	NA	NA	NA	12410213	12419805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_12410352_12410620_12410795_12411302_12411520_12413783_12413926_12415930_12416033_12416330_12416472_12417594_12417807_12418025_12418160_12419768
transcript_33297.known	chr13	+	4239	16	FSM	ENSMUSG00000057069.8	ENSMUST00000071973.8	4239	16	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_15	21.5185707910374	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGTTTCTTTGTTTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	12580763	12624417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_12581060_12589700_12589821_12594056_12594141_12595254_12595297_12596549_12596633_12598417_12598492_12605641_12605763_12605865_12605913_12608388_12608401_12610578_12610606_12614749_12614843_12614975_12615223_12616624_12616695_12617199_12617287_12619216_12619351_12621715
transcript_33304.known	chr13	-	2351	8	FSM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	66.0247325335169	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCAGACTCCTGACAGC	NA	False	NA	NA	False	AATAAA	-26	NA	13568149	13533019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
transcript_33312.known	chr13	-	2971	7	FSM	ENSMUSG00000021306.12	ENSMUST00000021738.10	2971	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	74.282680798869	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCAACTGGTGCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	13568199	13532204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_13534009_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
transcript_33313.known	chr13	-	3634	7	FSM	ENSMUSG00000021306.12	ENSMUST00000220628.2	3634	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_3	22.9249984853992	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATTTTGTAGAGTTTTC	NA	False	NA	NA	False	ATTAAA	-20	NA	13568209	13533200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
transcript_3332.known	chr1	+	3130	18	FSM	ENSMUSG00000026289.16	ENSMUST00000027512.13	3130	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	58.4556141318301	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGTCTTGATTGTCTTT	7245	False	NA	23	True	AATAAA	-32	NA	87683734	87720150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87702534_87702592_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
transcript_33323.nic	chr13	-	3218	4	NIC	ENSMUSG00000021306.12	novel	3634	7	NA	NA	-5	2247	intron_retention	FALSE	canonical	3	203	junction_3	15.1510909031513	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACAGACTCACTCTAT	NA	False	NA	NA	False	NA	NA	NA	13568214	13537340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_13539781_13542173_13542397_13548943_13548994_13567709
transcript_33332.known	chr13	+	6091	20	FSM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	184.261632008595	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGATGTGTTTTTGCTGT	NA	False	NA	12	True	ATTAAA	-27	NA	13612135	13686854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
transcript_33350.known	chr13	+	3803	14	FSM	ENSMUSG00000005397.9	ENSMUST00000222142.2	3803	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	206.809290991088	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	13612251	13676049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030
transcript_33363.known	chr13	-	1853	17	FSM	ENSMUSG00000039233.13	ENSMUST00000162326.2	1853	17	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	33.754571449657	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGATTTCTCTGCCCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	14214223	14172537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178117_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_33375.nic	chr13	+	2465	13	NIC	ENSMUSG00000039242.11	novel	2439	13	NA	NA	73	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	55.6334107249312	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129126	14173659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171610_14172963
transcript_33376.known	chr13	+	2439	13	FSM	ENSMUSG00000039242.11	ENSMUST00000221974.2	2439	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	57.9839537190151	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCTGTAGTACCCTGAA	NA	False	NA	NA	False	AATAAA	-30	NA	14129209	14173688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171638_14172963
transcript_33377.nic	chr13	+	2333	13	NIC	ENSMUSG00000039242.11	novel	2439	13	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	71.8661467977486	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129217	14173659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165994_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171610_14172963
transcript_33378.known	chr13	-	1855	13	FSM	ENSMUSG00000039233.13	ENSMUST00000159239.8	1855	13	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_7	16.4519502390041	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAAAAGGAGAAAACA	NA	False	NA	NA	False	NA	NA	NA	14214206	14177648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_33379.known	chr13	+	3892	12	FSM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_5	19.409889274617	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129053	14173659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
transcript_33380.nic	chr13	+	3829	12	NIC	ENSMUSG00000039242.11	novel	3892	12	NA	NA	22	0	intron_retention	FALSE	canonical	3	22	junction_7	55.6602741252905	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129075	14173659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165994_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
transcript_33384.nic	chr13	+	3774	11	NIC	ENSMUSG00000039242.11	novel	3892	12	NA	NA	22	0	intron_retention	FALSE	canonical	2	3	junction_4	63.396845347383	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129075	14173659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
transcript_33386.known	chr13	+	1876	11	FSM	ENSMUSG00000039242.11	ENSMUST00000223483.2	1876	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	79.4770407098805	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATCATGTTTTCTTTTA	NA	False	NA	NA	False	ACTAAA	-37	NA	14129258	14172086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14155185_14155282_14161937_14162049_14165373_14165453_14165994_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
transcript_33387.known	chr13	-	933	5	FSM	ENSMUSG00000039233.13	ENSMUST00000160304.8	933	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	14.9059551857638	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACCCCTCAGTGCAGGTG	NA	False	NA	NA	False	NA	NA	NA	14214181	14188936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_33390.known	chr13	-	909	4	FSM	ENSMUSG00000039233.13	ENSMUST00000160776.2	909	4	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	12.4988888395018	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCCAGGGCTACACAGAG	NA	False	NA	NA	False	NA	NA	NA	14214202	14193859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14194473_14202282_14202368_14203860_14203992_14214122
transcript_33395.nic	chr13	+	1824	16	ISM	ENSMUSG00000039219.19	ENSMUST00000110534.8	5864	24	-47	34513	-39	-833	5prime_fragment	FALSE	canonical	3	52	junction_14	9.85765354094641	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAACTTGGAAGATAAAG	1389	False	NA	NA	False	AAAAAG	-29	NA	14238329	14339434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693_14338935_14339351
transcript_33396.known	chr13	+	3020	15	FSM	ENSMUSG00000039219.19	ENSMUST00000110533.2	3020	15	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_14	10.1962878399095	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAGAAAAATATACAAA	1443	False	NA	NA	False	AAGAAA	-2	NA	14238383	14340267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693
transcript_3340.known	chr1	+	3004	17	FSM	ENSMUSG00000026289.16	ENSMUST00000113186.8	3004	17	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_8	19.4867743610891	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCCTTGCGTCTTGATT	7308	False	NA	17	True	AATAAA	-26	NA	87683797	87720144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
transcript_33400.nic	chr13	+	759	7	ISM	ENSMUSG00000039219.19	ENSMUST00000110533.2	3020	15	-54	29447	-39	-2579	5prime_fragment	FALSE	canonical	3	65	junction_4	2.42670329642684	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAGGAAGAAGATCTAACC	1389	False	NA	NA	False	AAGAAA	-6	NA	14238329	14310820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752
transcript_33402.known	chr13	-	2209	6	FSM	ENSMUSG00000021302.11	ENSMUST00000222747.2	2209	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	113.73372411031	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTCAAAAAAAAAGCTTCAAA	NA	False	NA	NA	False	NA	NA	NA	14237971	14225513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14226716_14226862_14226979_14228494_14229041_14229734_14229806_14232380_14232474_14237790
transcript_33408.known	chr13	-	870	5	FSM	ENSMUSG00000021302.11	ENSMUST00000223174.2	870	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	114.48007468551	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTTCCAGATTAGAGAT	NA	False	NA	NA	False	NA	NA	NA	14237958	14228637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234039_14237790
transcript_33415.nic	chr13	-	1302	5	NIC	ENSMUSG00000021302.11	novel	870	5	NA	NA	-10	289	intron_retention	FALSE	canonical	3	19	junction_4	113.102829319164	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAGACTCAGTAGCTTCT	NA	False	NA	-6	True	AATAAA	-18	NA	14238013	14228264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234043_14237790
transcript_33416.known	chr13	-	652	5	FSM	ENSMUSG00000021302.11	ENSMUST00000221338.2	652	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	126.178445068879	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCGATATTTACTGGAGG	NA	False	NA	NA	False	NA	NA	NA	14237995	14228802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14235547_14235593_14237790
transcript_33418.known	chr13	-	4244	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAATGTTAATTTGCTCA	NA	False	NA	-10	True	TATAAA	-1	NA	14238073	14225243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
transcript_33423.known	chr13	-	762	3	FSM	ENSMUSG00000021302.11	ENSMUST00000222687.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	137.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAAGTTCTCATTCCCC	NA	False	NA	NA	False	AATACA	-34	NA	14237994	14228553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14229041_14229734_14229806_14237790
transcript_33426.known	chr13	-	1174	3	FSM	ENSMUSG00000015672.5	ENSMUST00000221699.2	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	520.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGTTGTTGAAAATGTA	NA	False	NA	NA	False	AATAAA	-24	NA	14787610	14784497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14785326_14786007_14786190_14787446
transcript_33427.known	chr13	-	658	3	FSM	ENSMUSG00000015672.5	ENSMUST00000015816.5	658	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	532	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAGTTGTTACTTTTAAA	NA	False	NA	-83	True	TTTAAA	-9	NA	14787600	14784957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14785326_14786007_14786190_14787492
transcript_3343.nic	chr1	+	3316	16	NIC	ENSMUSG00000026289.16	novel	3344	18	NA	NA	-2	0	intron_retention	FALSE	canonical	3	160	junction_8	19.8422668955832	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGCGTCTTGATTGTC	7243	False	NA	20	True	AATAAA	-29	NA	87683732	87720147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
transcript_33430.known	chr13	-	3013	3	FSM	ENSMUSG00000015672.5	ENSMUST00000220621.2	3013	3	0	0	0	0	multi-exon	FALSE	canonical	3	1082	junction_1	15.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTTGAGTTTTTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	14787750	14782768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_14785326_14786007_14786190_14787476
transcript_33433.known	chr13	+	2911	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	0	0	0	0	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	1389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGAGTGGTGGTTGC	NA	False	NA	7	True	ATTAAA	-18	NA	14787824	14802221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
transcript_33439.known	chr13	+	2035	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804738	14812788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_14804870_14810884
transcript_33441.known	chr13	+	2914	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCGCTAGCAAGTGAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	14804832	14813681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_14804950_14810884
transcript_33445.known	chr13	+	2672	2	FSM	ENSMUSG00000012429.10	ENSMUST00000049744.4	2672	2	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTACTAAACAGTCTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	17869997	17873690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_17870406_17871426
transcript_33447.known	chr13	-	12548	14	FSM	ENSMUSG00000041297.9	ENSMUST00000223490.2	12548	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	13.284773505807	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGAAGTGATGGTGCAC	NA	False	NA	NA	False	NA	NA	NA	17979682	17884899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_17893497_17893940_17894211_17895672_17895879_17901704_17901837_17902651_17902769_17913501_17913580_17913675_17913778_17924841_17924899_17926255_17926446_17937688_17937860_17939538_17939679_17941020_17941192_17946885_17947543_17978022
transcript_33448.known	chr13	-	5202	14	FSM	ENSMUSG00000041297.9	ENSMUST00000042365.9	5202	14	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	12.8002403823582	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGTGGTTTTTATATGA	NA	False	NA	81	True	AATACA	-19	NA	17979236	17891979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_17893497_17893940_17894391_17895672_17895879_17901704_17901837_17902651_17902769_17913501_17913580_17913675_17913778_17924841_17924899_17926255_17926446_17937688_17937860_17939538_17939679_17941020_17941192_17946885_17947543_17978022
transcript_33459.nic	chr13	-	2882	4	ISM	ENSMUSG00000041297.9	ENSMUST00000042365.9	5202	14	-803	47662	-357	1176	5prime_fragment	FALSE	canonical	3	56	junction_1	11.3431330181157	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTGACTGGGGGAAACG	NA	False	NA	NA	False	AATAGA	-37	NA	17980039	17939641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_17939679_17941020_17941192_17946885_17947543_17978022
transcript_33463.known	chr13	-	1062	3	FSM	ENSMUSG00000041297.9	ENSMUST00000222848.2	1062	3	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	1	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACAGTTTGTAATTATTA	NA	False	NA	NA	False	AATAAA	-16	NA	17978053	17940817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_17941192_17946885_17947543_17978022
transcript_33466.nic	chr13	-	2229	2	ISM	ENSMUSG00000041297.9	ENSMUST00000221775.2	662	3	-679	-234	-229	234	intron_retention	FALSE	canonical	3	79	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAACTGAGCATGCACC	NA	False	NA	NA	False	NA	NA	NA	17979911	17947202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_17947543_17978022
transcript_33468.known	chr13	-	2688	5	FSM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	0	0	0	0	multi-exon	FALSE	canonical	3	817	junction_1	45.9292934846597	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGTTCATTGATGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	18118824	18055155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_18057087_18063091_18063267_18067706_18067916_18071537_18071688_18118601
transcript_33470.nic	chr13	-	617	4	ISM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	-13	8089	-13	-67	5prime_fragment	FALSE	canonical	3	884	junction_3	22.553639765383	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGAGAATGTTCCATT	NA	False	NA	NA	False	AGTAAA	-2	NA	18118837	18063244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_18063267_18067706_18067916_18071537_18071688_18118601
transcript_33471.known	chr13	+	1988	1	FSM	ENSMUSG00000113528.2	ENSMUST00000221728.2	1988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTATTCAAGTGTCCT	NA	False	NA	NA	False	AATAAA	-32	NA	18118875	18120863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_18118900_18120900
transcript_33474.known	chr13	-	1382	3	FSM	ENSMUSG00000075054.6	ENSMUST00000222796.2	1382	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	260	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTGTGCTAAACTGTAA	NA	False	NA	NA	False	ATTAAA	-38	NA	18167688	18163419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_18164368_18166212_18166335_18167376
transcript_33475.known	chr13	-	8744	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_2	27.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCGATGTGTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-31	NA	18167934	18155914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_18164368_18166212_18166335_18167765
transcript_33478.known	chr13	-	2749	1	FSM	ENSMUSG00000075054.6	ENSMUST00000222595.2	2749	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAATAAATATATTA	NA	False	NA	NA	False	NA	NA	NA	18167913	18165164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_18165200_18167900
transcript_33479.known	chr13	-	1024	2	FSM	ENSMUSG00000075054.6	ENSMUST00000222308.2	1024	2	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTAAATTTTGTTGAG	NA	False	NA	NA	False	AAAAAG	-8	NA	18167913	18165458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_18166335_18167765
transcript_33484.known	chr13	+	3199	29	FSM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	0	0	0	0	multi-exon	TRUE	canonical	3	419	junction_25	60.5186237990473	636	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901459	19050981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
transcript_33511.known	chr13	+	3224	21	FSM	ENSMUSG00000021314.14	ENSMUST00000200466.5	3224	21	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_16	10.4957134107215	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTACATGGGTTCTTTT	NA	False	NA	10	True	AATAAA	-15	NA	19132520	19335082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305502_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
transcript_3352.known	chr1	-	3977	32	FSM	ENSMUSG00000005501.15	ENSMUST00000187758.7	3977	32	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_30	6.87528260700014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCAAACAAGTGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	87936256	87874164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_87874430_87876223_87876319_87877653_87877750_87877880_87878092_87879364_87879431_87880061_87880181_87881872_87881968_87884932_87885057_87887510_87887586_87890145_87890211_87893027_87893065_87894905_87894993_87895231_87895321_87896117_87896172_87901798_87901857_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
transcript_33523.known	chr13	-	1391	10	FSM	ENSMUSG00000003062.14	ENSMUST00000197565.3	1391	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	324.011659598163	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	0	True	AATAAA	-19	NA	19579904	19541845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19575142_19575268_19579873
transcript_33527.known	chr13	-	1327	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_8	60.3857392105123	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	0	True	AATAAA	-19	NA	19579965	19541845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_33535.known	chr13	-	1074	8	FSM	ENSMUSG00000003062.14	ENSMUST00000199278.3	1074	8	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_7	61.3454587245254	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATCCCTGCCTGCGGC	NA	False	NA	NA	False	NA	NA	NA	19579925	19542170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_33536.known	chr13	-	1030	8	FSM	ENSMUSG00000003062.14	ENSMUST00000222869.2	1030	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	273.451708231442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTGTTTCAATTCTC	NA	False	NA	NA	False	AATATA	-33	NA	19579952	19542011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_33538.known	chr13	-	1128	8	FSM	ENSMUSG00000003062.14	ENSMUST00000200323.3	1128	8	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	267.855352374968	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCATGCCCCTGCTTT	NA	False	NA	-3	True	AATAAA	-18	NA	19579904	19549125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_19549516_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_33541.known	chr13	-	2363	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.5	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAGCCTATTAAGTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	19803974	19775875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_19777519_19778616_19778826_19803463
transcript_33544.known	chr13	+	1764	6	FSM	ENSMUSG00000021319.8	ENSMUST00000002883.7	1764	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.72046505340853	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATGTGTTTGTTGTCTGC	NA	False	NA	NA	False	GATAAA	-28	NA	19807344	19816999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_19808048_19809197_19809279_19809363_19809430_19811275_19811475_19814235_19814300_19816348
transcript_33546.known	chr13	+	5464	22	FSM	ENSMUSG00000041112.18	ENSMUST00000072519.7	5464	22	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_15	9.13863990039136	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCTGATATTCAATTCCA	NA	False	NA	NA	False	AATAAA	-15	NA	20274788	20792523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_20274942_20369523_20369675_20392303_20392345_20393308_20393382_20425742_20425794_20435173_20435344_20445726_20445763_20458689_20458790_20464981_20465134_20467081_20467161_20470889_20470941_20472060_20472184_20474531_20474664_20526537_20526643_20557251_20557361_20633639_20633777_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
transcript_33547.nic	chr13	+	3809	21	ISM	ENSMUSG00000041112.18	ENSMUST00000072519.7	5464	22	94407	1830	-181	-1830	3prime_fragment	FALSE	canonical	2	20	junction_14	9.21628992599517	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGGGGAGCTGGTGTTT	NA	False	NA	3	True	AATAAA	-13	NA	20369195	20790693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_20369675_20392303_20392345_20393308_20393382_20425742_20425794_20435173_20435344_20445726_20445763_20458689_20458790_20464981_20465134_20467081_20467161_20470889_20470941_20472060_20472184_20474531_20474664_20526537_20526643_20557251_20557361_20633639_20633777_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
transcript_33549.nic	chr13	+	2224	7	NIC	ENSMUSG00000041112.18	novel	3748	5	NA	NA	309	-1830	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	14.4308696896618	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGGGGAGCTGGTGTTT	NA	False	NA	3	True	AATAAA	-13	NA	20657204	20790693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_20657458_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
transcript_33550.nic	chr13	+	629	4	ISM	ENSMUSG00000041112.18	ENSMUST00000181429.8	3113	7	-188	54796	-188	0	5prime_fragment	FALSE	canonical	3	27	junction_1	2.49443825784929	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGCCATAACCCAGGGCT	NA	False	NA	NA	False	NA	NA	NA	20274577	20393381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_20274942_20369523_20369675_20392303_20392345_20393308
transcript_33555.nnic	chr13	+	1890	11	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74273	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_6	9.14549069213894	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGGGCATAATTGTG	NA	False	NA	23	True	AATAAA	-16	NA	21120529	21208422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
transcript_3356.known	chr1	+	5695	30	FSM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_21	37.602590545009	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCATTCCTGTCCTCAT	4070	False	NA	20	True	AATAAA	-24	NA	87781008	87872212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821_87842927_87843213_87843347_87844090_87844198_87844528_87844655_87845613_87845717_87846280_87846444_87849294_87849404_87851793_87851934_87852201_87852287_87853415_87853511_87853594_87853695_87853772_87854047_87854587_87854747_87855406_87855533_87857462_87857560_87859653_87859765_87861827_87861925_87862115_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898_87868029_87869090_87869222_87870104
transcript_33564.known	chr13	+	1750	1	FSM	ENSMUSG00000021326.14	ENSMUST00000124052.3	1750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATCTGAGAAATAGCTT	956	False	NA	18	True	AATAAA	-19	NA	21364127	21365877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21364100_21365900
transcript_33565.known	chr13	+	2046	8	FSM	ENSMUSG00000021326.14	ENSMUST00000223065.2	2046	8	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_5	261.483054432026	3194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACGTTTTGTTTTTGTTAT	1222	False	NA	21	True	AATAAA	-23	NA	21364393	21377033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21365085_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374266_21374295_21375389_21375417_21376199
transcript_33566.known	chr13	+	1340	5	FSM	ENSMUSG00000004341.9	ENSMUST00000004453.9	1340	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	5.71729831301464	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGACTCTGAGTGATGT	925	False	NA	NA	False	NA	NA	NA	21496294	21503794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21496515_21497817_21497972_21501154_21501273_21501738_21501839_21503046
transcript_33567.known	chr13	+	4405	4	FSM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	12.0277457017791	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTCTCATAATTATGGT	NA	False	NA	8	True	NA	NA	NA	21546989	21556459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21547043_21547749_21548222_21550784_21550927_21552721
transcript_33568.nnic	chr13	+	2230	4	NIC	ENSMUSG00000036721.15	novel	2270	5	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	22.9927524813074	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTGTATACTGTCCTT	NA	False	NA	8	True	CATAAA	-13	NA	21547002	21553994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_21547346_21547749_21548222_21550784_21550927_21552721
transcript_33573.known	chr13	+	2182	3	FSM	ENSMUSG00000036721.15	ENSMUST00000099720.3	2182	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTGTATACTGTCCTT	NA	False	NA	8	True	CATAAA	-13	NA	21547454	21553994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21548222_21550784_21550927_21552721
transcript_33575.known	chr13	-	2600	6	FSM	ENSMUSG00000021327.20	ENSMUST00000116434.11	2600	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	29.6486087363303	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586925	21571172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580745_21586841
transcript_33576.nic	chr13	-	2844	6	NIC	ENSMUSG00000021327.20	novel	2561	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	37.8386046254351	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586886	21571172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586561
transcript_33577.known	chr13	-	2561	6	FSM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	21.2452347598232	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586883	21571172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586841
transcript_33579.nic	chr13	-	2780	6	NIC	ENSMUSG00000021327.20	novel	2561	6	NA	NA	0	-64	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	37.8386046254351	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCCTACTCATGTAGTG	NA	False	NA	-62	True	NA	NA	NA	21586886	21571236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586561
transcript_3358.nic	chr1	-	3603	30	ISM	ENSMUSG00000005501.15	ENSMUST00000187758.7	3977	32	-47	3550	-30	-294	5prime_fragment	FALSE	canonical	3	37	junction_28	6.72935253151893	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGATACTTTGCAAGGGG	NA	False	NA	NA	False	AATAGA	-35	NA	87936303	87877714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_87877750_87877880_87878092_87879364_87879431_87880061_87880181_87881872_87881968_87884932_87885057_87887510_87887586_87890145_87890211_87893027_87893065_87894905_87894993_87895231_87895321_87896117_87896172_87901798_87901857_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
transcript_33586.known	chr13	-	2101	5	FSM	ENSMUSG00000021327.20	ENSMUST00000223831.2	2101	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	45.4477722226294	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586901	21571172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21586841
transcript_33589.known	chr13	-	4366	6	FSM	ENSMUSG00000022228.15	ENSMUST00000110485.3	4366	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	4.81663783151692	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCATTATTGAGGATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	21637900	21626349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21630000_21631955_21632065_21632336_21632655_21633443_21633504_21633610_21633687_21637747
transcript_33591.known	chr13	-	2642	5	FSM	ENSMUSG00000055313.16	ENSMUST00000239246.2	2642	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.20156211871642	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATTTCCTCACTTTCAG	NA	False	NA	NA	False	ATTAAA	-13	NA	21625214	21606021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21607795_21612437_21612549_21617560_21617713_21618520_21618842_21624929
transcript_33594.known	chr13	-	3918	4	FSM	ENSMUSG00000022228.15	ENSMUST00000032820.15	3918	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	8.64098759787715	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCATTATTGAGGATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	21637830	21626349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21630000_21631955_21632065_21633610_21633687_21637747
transcript_33595.known	chr13	-	2600	5	FSM	ENSMUSG00000055313.16	ENSMUST00000148071.8	2600	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.69966214673719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATTTCCTCACTTTCAG	NA	False	NA	NA	False	ATTAAA	-13	NA	21625228	21606021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21607795_21612437_21612533_21617560_21617713_21618520_21618842_21624969
transcript_33596.known	chr13	+	2400	3	FSM	ENSMUSG00000054931.8	ENSMUST00000062609.6	2400	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTTAGAGTTTCTAT	NA	False	NA	NA	False	AATAAA	-28	NA	21663076	21669677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21663680_21665443_21665601_21668037
transcript_33597.known	chr13	+	1924	1	FSM	ENSMUSG00000078139.4	ENSMUST00000104942.2	1924	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGTAGAATTTGAAGTAG	NA	False	NA	NA	False	TTTAAA	-27	NA	21679392	21681316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21679400_21681300
transcript_33598.known	chr13	+	393	1	FSM	ENSMUSG00000071516.3	ENSMUST00000070124.5	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2487	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAAACATTACGAATCAC	3399	False	NA	-42	True	NA	NA	NA	21900591	21900984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21900600_21901000
transcript_33599.known	chr13	+	411	1	FSM	ENSMUSG00000101355.2	ENSMUST00000188775.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCGTCTTTCTGTGTTTT	4636	False	NA	NA	False	NA	NA	NA	21901828	21902239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21901800_21902200
transcript_336.known	chr1	+	770	5	FSM	ENSMUSG00000051285.18	ENSMUST00000182114.8	770	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	40.8495716011808	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCAAGGGGATTCCACAA	NA	False	NA	NA	False	CATAAA	-12	NA	7159153	7239822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_7159441_7217860_7217964_7231115_7231288_7233471_7233596_7239738
transcript_3360.nic	chr1	+	5591	29	NIC	ENSMUSG00000070738.11	novel	5695	30	NA	NA	-29	-2	combination_of_known_junctions	FALSE	canonical	3	29	junction_28	64.6690554646801	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGAGCATTCCTGTCCTC	4041	False	NA	18	True	AATAAA	-22	NA	87780979	87872210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821_87842927_87843213_87843347_87844090_87844198_87844528_87844655_87845613_87845717_87846280_87846444_87849294_87849404_87851793_87851934_87852201_87852287_87853415_87853511_87853594_87853695_87853772_87854047_87854587_87854747_87855406_87855533_87857462_87857560_87859653_87859765_87861827_87861925_87862115_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898_87868029_87870104
transcript_33600.known	chr13	+	524	1	FSM	ENSMUSG00000114279.2	ENSMUST00000224651.2	524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTCTAGAGTACATTCC	9021	False	NA	NA	False	NA	NA	NA	21906213	21906737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21906200_21906700
transcript_33601.known	chr13	-	393	1	FSM	ENSMUSG00000063021.4	ENSMUST00000074752.4	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCCTTGATAGAAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	21937997	21937604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21937600_21938000
transcript_33602.known	chr13	+	381	1	FSM	ENSMUSG00000095217.2	ENSMUST00000091709.3	381	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTTTAACTCACACTCC	2103	False	NA	NA	False	NA	NA	NA	21938292	21938673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21938300_21938700
transcript_33603.known	chr13	-	743	1	FSM	ENSMUSG00000058773.3	ENSMUST00000080511.3	743	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCTTGCGACAGCAACA	NA	False	NA	NA	False	AAAAAG	-7	NA	21964795	21964052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21964100_21964800
transcript_33604.known	chr13	-	411	1	FSM	ENSMUSG00000101972.2	ENSMUST00000189457.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCCTACCTGTTAATAAC	NA	False	NA	NA	False	NA	NA	NA	21967540	21967129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21967100_21967500
transcript_33605.known	chr13	-	393	1	FSM	ENSMUSG00000069309.3	ENSMUST00000091751.3	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAATTGTTTCCTGATCAT	NA	False	NA	NA	False	NA	NA	NA	21971388	21970995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_21971000_21971400
transcript_33606.known	chr13	+	480	1	FSM	ENSMUSG00000094248.2	ENSMUST00000091745.6	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5811	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAAATCGATGTCATTT	NA	False	NA	NA	False	TTTAAA	-13	NA	21994634	21995114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_21994600_21995100
transcript_33607.known	chr13	-	430	1	FSM	ENSMUSG00000069305.4	ENSMUST00000102979.2	430	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTACGGGCGGGCAAGT	NA	False	NA	NA	False	NA	NA	NA	22016366	22015936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_22015900_22016400
transcript_33608.known	chr13	-	482	1	FSM	ENSMUSG00000094777.3	ENSMUST00000081342.7	482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10595	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGTCTTTTAAAGAAC	NA	False	NA	NA	False	AAAAAG	-19	NA	22017677	22017195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_22017200_22017700
transcript_33609.known	chr13	+	2834	6	FSM	ENSMUSG00000006720.17	ENSMUST00000176580.8	2834	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	30.2654919008431	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCACATTTTTGTCATG	NA	False	NA	NA	False	CATAAA	-13	NA	22129281	22144773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_22129370_22129725_22129970_22131172_22131241_22133829_22133957_22134372_22134500_22142593
transcript_33610.known	chr13	+	2703	6	FSM	ENSMUSG00000006720.17	ENSMUST00000176511.8	2703	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	19.7949488506538	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTTAAGTTTCTTCTG	NA	False	NA	12	True	ATTAAA	-16	NA	22129263	22144655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_22129370_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
transcript_33611.known	chr13	+	3198	6	FSM	ENSMUSG00000006720.17	ENSMUST00000102978.8	3198	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	13.42236938845	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGAATCAAATTCAGTTG	NA	False	NA	NA	False	AATAAA	-12	NA	22129281	22144949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_22129589_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
transcript_33612.known	chr13	-	1159	5	FSM	ENSMUSG00000006179.10	ENSMUST00000150547.3	1159	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	4.63680924774785	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATTACTGTCCTTTGT	NA	False	NA	NA	False	TATAAA	-8	NA	22190582	22186720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_22186981_22187095_22187242_22187315_22187496_22189260_22189403_22190151
transcript_33614.known	chr13	-	405	1	FSM	ENSMUSG00000069302.6	ENSMUST00000091742.6	405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1829	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTTTCAATATCTCCCAA	NA	False	NA	NA	False	NA	NA	NA	22219738	22219333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_22219300_22219700
transcript_33615.known	chr13	+	476	1	FSM	ENSMUSG00000062727.5	ENSMUST00000110455.4	476	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTCACCTTCGAGTACG	NA	False	NA	39	True	ACTAAA	-25	NA	22220039	22220515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_22220000_22220500
transcript_33616.known	chr13	-	485	1	FSM	ENSMUSG00000069301.6	ENSMUST00000091741.6	485	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCACTTAGCTTTCTGGA	NA	False	NA	19	True	NA	NA	NA	22227114	22226629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_22226600_22227100
transcript_33617.known	chr13	+	463	1	FSM	ENSMUSG00000069300.4	ENSMUST00000110452.2	463	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCATGTCTACTGCTAAC	NA	False	NA	NA	False	TTTAAA	-8	NA	22227383	22227846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_22227400_22227800
transcript_33618.known	chr13	-	1261	5	FSM	ENSMUSG00000046351.12	ENSMUST00000145451.8	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	37.5499667110372	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAGGCACCGAAGAACTC	9013	False	NA	NA	False	NA	NA	NA	23553371	23541201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553026
transcript_33619.known	chr13	-	815	5	FSM	ENSMUSG00000046351.12	ENSMUST00000125328.2	815	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	23.1124966197942	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCAGAGAACACATGCAGG	9020	False	NA	NA	False	NA	NA	NA	23553364	23541362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
transcript_33624.known	chr13	-	4844	4	FSM	ENSMUSG00000046351.12	ENSMUST00000050101.9	4844	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	41.5772373621272	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTCTCCACTATACTA	9006	False	NA	0	True	AATAAA	-22	NA	23553378	23537272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553304
transcript_33625.known	chr13	-	986	4	FSM	ENSMUSG00000046351.12	ENSMUST00000152557.8	986	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	48.1940521918075	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGGCACCGAAGAACTCA	9214	False	NA	NA	False	NA	NA	NA	23553170	23541200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553026
transcript_33631.known	chr13	-	4456	3	FSM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	5.5	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGGACTCTGTAAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	23608036	23602530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23606506_23606652_23606853_23607755
transcript_33632.known	chr13	-	3423	8	FSM	ENSMUSG00000000706.17	ENSMUST00000041674.14	3423	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.451753951452626	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAATGTCTGTTTGCTGAAG	NA	False	NA	NA	False	AATAAA	-15	NA	23650045	23641161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23643538_23643922_23643950_23644042_23644064_23644634_23644785_23645655_23645938_23648401_23648753_23649271_23649394_23649951
transcript_33633.known	chr13	-	2370	8	FSM	ENSMUSG00000053216.16	ENSMUST00000110433.10	2370	8	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	2.18529407725405	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTGTGCTCAGTAAGAA	NA	False	NA	NA	False	AATAAA	-15	NA	23673027	23661845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23663012_23664619_23664647_23664736_23664758_23665941_23666116_23666888_23667171_23670298_23670647_23672002_23672133_23672805
transcript_33639.known	chr13	+	470	1	FSM	ENSMUSG00000060981.8	ENSMUST00000102972.6	470	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATTGTGCAACGTTAG	4561	False	NA	NA	False	ATTAAA	-27	NA	23715219	23715689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23715200_23715700
transcript_33640.known	chr13	+	399	1	FSM	ENSMUSG00000061991.3	ENSMUST00000073261.3	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGAGCTAAGTTTTTTT	7417	False	NA	NA	False	NA	NA	NA	23718075	23718474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23718100_23718500
transcript_33641.known	chr13	+	530	1	FSM	ENSMUSG00000099517.3	ENSMUST00000080859.8	530	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAATCAGTTTCATTTGT	8933	False	NA	NA	False	AAAAAG	-29	NA	23719591	23720121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23719600_23720100
transcript_33642.known	chr13	-	704	1	FSM	ENSMUSG00000069272.7	ENSMUST00000102969.6	704	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGATTGCCCACTAGGAC	8814	False	NA	NA	False	AATAAA	-23	NA	23755394	23754690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23754700_23755400
transcript_33643.known	chr13	+	1249	1	FSM	ENSMUSG00000099583.3	ENSMUST00000105105.4	1249	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGGAAAGAAAG	2947	False	NA	NA	False	NA	NA	NA	23759936	23761185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23759900_23761200
transcript_33644.known	chr13	+	1138	1	FSM	ENSMUSG00000061482.8	ENSMUST00000102968.3	1138	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	1913	False	NA	NA	False	NA	NA	NA	23765580	23766718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23765600_23766700
transcript_33645.known	chr13	+	1156	2	FSM	ENSMUSG00000018102.6	ENSMUST00000018246.6	1156	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTGGGAGCTGAAGGGT	183	False	NA	NA	False	NA	NA	NA	23868181	23876891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23868605_23876158
transcript_33646.known	chr13	-	3572	6	FSM	ENSMUSG00000006611.16	ENSMUST00000091706.14	3572	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.85472369909914	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTGTATTTCTCTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	23894837	23886016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23888410_23889606_23889718_23889843_23890120_23890749_23891050_23892010_23892275_23894609
transcript_33648.known	chr13	+	1560	1	FSM	ENSMUSG00000036181.3	ENSMUST00000040914.3	1560	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGGACTCTTTCATACC	NA	False	NA	16	True	AATAAA	-21	NA	23922790	23924350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23922800_23924400
transcript_33649.known	chr13	+	508	1	FSM	ENSMUSG00000075031.5	ENSMUST00000099703.5	508	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAATATATGACCTAACT	NA	False	NA	NA	False	NA	NA	NA	23930716	23931224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23930700_23931200
transcript_33650.known	chr13	+	473	1	FSM	ENSMUSG00000061615.3	ENSMUST00000078369.3	473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATAAAATGAGCTGCCAC	400	False	NA	NA	False	AAAACA	-30	NA	23935108	23935581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23935100_23935600
transcript_33651.known	chr13	+	620	1	FSM	ENSMUSG00000069267.3	ENSMUST00000091703.3	620	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTCAAAGATTTATC	1541	False	NA	NA	False	NA	NA	NA	23936249	23936869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23936200_23936900
transcript_33652.known	chr13	-	539	1	FSM	ENSMUSG00000060093.7	ENSMUST00000102964.4	539	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTCAAGTTTGCACCAT	NA	False	NA	NA	False	AATAAA	-24	NA	23945213	23944674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23944700_23945200
transcript_33653.known	chr13	-	534	1	FSM	ENSMUSG00000069265.3	ENSMUST00000091701.3	534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCTTAAACGAACCTATAT	NA	False	NA	NA	False	AGTAAA	-19	NA	23946369	23945835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_23945800_23946400
transcript_33654.known	chr13	+	741	1	FSM	ENSMUSG00000049539.4	ENSMUST00000055770.4	741	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCAACATAACTCAAAGAG	NA	False	NA	NA	False	TATAAA	-25	NA	23947648	23948389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_23947600_23948400
transcript_33655.known	chr13	+	390	1	FSM	ENSMUSG00000060081.2	ENSMUST00000072391.2	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCTGCACAAGACAGCAAC	NA	False	NA	NA	False	NA	NA	NA	24118444	24118834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_24118400_24118800
transcript_33656.known	chr13	-	4988	38	FSM	ENSMUSG00000021338.18	ENSMUST00000072889.12	4988	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	44.9615695001977	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTCTGCTTATTAGTT	NA	False	NA	NA	False	TATAAA	-26	NA	24464778	24196641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_24197444_24206478_24206620_24208305_24208519_24209836_24209919_24220167_24220592_24225655_24225769_24228156_24228354_24228998_24229066_24248559_24248710_24251114_24251203_24253613_24253790_24257922_24258055_24259594_24259724_24265911_24266011_24272960_24273055_24276488_24276558_24278380_24278554_24282788_24282844_24282943_24283044_24283564_24283647_24286054_24286067_24290291_24290362_24292472_24292578_24295792_24295870_24295996_24296075_24299457_24299562_24305821_24305909_24321119_24321215_24323271_24323361_24325638_24325715_24338660_24338735_24338966_24339038_24339372_24339471_24348783_24348906_24357598_24357659_24362189_24362241_24460439_24460538_24464543
transcript_33657.nnic	chr13	-	5240	37	NIC	ENSMUSG00000021338.18	novel	4988	38	NA	NA	-215	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_19	52.1798587035361	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGACTTCTTCCAGTTCTT	NA	False	NA	2	True	AATAAA	-19	NA	24464993	24196463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_24197444_24208305_24208519_24209836_24209919_24220167_24220592_24225655_24225769_24228156_24228354_24228998_24229066_24248559_24248710_24251114_24251203_24253613_24253790_24257922_24258055_24259594_24259724_24265911_24266011_24272960_24273055_24276488_24276558_24278380_24278554_24282788_24282844_24282943_24283044_24283564_24283647_24286054_24286067_24290291_24290362_24292472_24292578_24295792_24295870_24295996_24296075_24299457_24299562_24305821_24305909_24321119_24321215_24323271_24323361_24325638_24325715_24338660_24338735_24338966_24339038_24339372_24339471_24348783_24348906_24357598_24357659_24362189_24362241_24460439_24460538_24464543
transcript_33659.known	chr13	-	723	7	FSM	ENSMUSG00000006715.12	ENSMUST00000175689.8	723	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	596.377513735125	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGCTAGGCCGTGTACAT	NA	False	NA	NA	False	NA	NA	NA	24945459	24936073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945342
transcript_33660.known	chr13	-	963	7	FSM	ENSMUSG00000006715.12	ENSMUST00000110382.9	963	7	0	0	0	0	multi-exon	FALSE	canonical	3	1483	junction_6	81.6382603658086	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945906	24935827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945795
transcript_33664.known	chr13	-	387	5	FSM	ENSMUSG00000006715.12	ENSMUST00000177253.2	387	5	0	0	0	0	multi-exon	FALSE	canonical	2	74	junction_3	633.203906731473	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGCGGAGGAAAGCTCT	NA	False	NA	NA	False	NA	NA	NA	24945880	24937688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_24937724_24940582_24940719_24941578_24941652_24944142_24944201_24945795
transcript_33668.known	chr13	+	5849	5	FSM	ENSMUSG00000019132.12	ENSMUST00000019276.12	5849	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	16.0370664399696	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTTACAGTGGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	24985639	25000180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_24987493_24988764_24988942_24989844_24989968_24993868_24994004_24996619
transcript_33678.known	chr13	-	721	3	FSM	ENSMUSG00000006717.8	ENSMUST00000006900.7	721	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	3	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGAAGTATTTTCTTT	4817	False	NA	-3	True	AATAAA	-19	NA	25015500	25001930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_25002175_25004697_25004883_25015208
transcript_33681.known	chr13	+	1957	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGACTTTTTTCTTCATG	NA	False	NA	21	True	AATAAA	-21	NA	25015661	25026136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_33683.known	chr13	+	1421	6	FSM	ENSMUSG00000035958.4	ENSMUST00000225138.2	1421	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	326.497534447046	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAAGTAGATGACAGCTG	NA	False	NA	NA	False	AAAAAG	-15	NA	25015678	25025788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_25015913_25015992_25016079_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_33685.nic	chr13	+	1976	6	NIC	ENSMUSG00000035958.4	novel	1957	7	NA	NA	-106	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	322.122585361536	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGACTTTTTTCTTCAT	NA	False	NA	20	True	AATAAA	-20	NA	25015555	25026135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_25015913_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_33691.known	chr13	+	1136	2	FSM	ENSMUSG00000035958.4	ENSMUST00000223804.2	1136	2	0	0	0	0	multi-exon	FALSE	canonical	3	778	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTAGAGATTTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	25015674	25016890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_25015913_25015992
transcript_33693.known	chr13	+	1771	6	FSM	ENSMUSG00000035958.4	ENSMUST00000225490.2	1771	6	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_4	61.475198251002	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGACTTTTTTCTTCAT	NA	False	NA	20	True	AATAAA	-20	NA	25015926	25026135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_33696.known	chr13	-	5647	10	FSM	ENSMUSG00000035936.7	ENSMUST00000037615.7	5647	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	4.49965705140369	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGAGTGGCTGTGTTGGT	NA	False	NA	1	True	AATAAA	-31	NA	25121644	25091561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_25095750_25096230_25096290_25097726_25097897_25099744_25099904_25102483_25102628_25103661_25103806_25107949_25108067_25109960_25110132_25111523_25111608_25121233
transcript_3370.nic	chr1	-	3540	29	ISM	ENSMUSG00000005501.15	ENSMUST00000187758.7	3977	32	-47	3744	-30	-488	5prime_fragment	FALSE	canonical	3	37	junction_27	6.81562954703738	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAGTGGCTTCCAATAT	NA	False	NA	NA	False	NA	NA	NA	87936303	87877908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_87878092_87879364_87879431_87880061_87880181_87881872_87881968_87884932_87885057_87887510_87887586_87890145_87890211_87893027_87893065_87894905_87894993_87895231_87895321_87896117_87896172_87901798_87901857_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
transcript_33700.known	chr13	+	1482	2	FSM	ENSMUSG00000086796.3	ENSMUST00000138447.2	1482	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAACTGTGGAGTGTGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	25089578	25091263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_25089692_25089894
transcript_33703.known	chr13	-	7035	11	FSM	ENSMUSG00000021339.5	ENSMUST00000021772.4	7035	11	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_5	19.2792634714089	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTGGACATTGTCATT	NA	False	NA	1	True	AATAAA	-17	NA	25204362	25171465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_25177172_25177652_25177767_25178707_25178826_25179327_25179481_25181010_25181128_25182907_25183039_25185609_25185784_25188925_25189039_25190421_25190459_25202502_25202577_25204064
transcript_3371.nic	chr1	+	3444	28	ISM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	-29	4225	-29	0	5prime_fragment	FALSE	canonical	3	256	junction_21	38.5730027766815	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAGAACAAAGAAGTTC	4041	False	NA	NA	False	AAAAAG	-9	NA	87780979	87867987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821_87842927_87843213_87843347_87844090_87844198_87844528_87844655_87845613_87845717_87846280_87846444_87849294_87849404_87851793_87851934_87852201_87852287_87853415_87853511_87853594_87853695_87853772_87854047_87854587_87854747_87855406_87855533_87857462_87857560_87859653_87859765_87861827_87861925_87862115_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898
transcript_33714.known	chr13	+	6634	10	FSM	ENSMUSG00000035910.16	ENSMUST00000069614.7	6634	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_2	2.86744175568088	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACTGAGGTTCAGTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	25240235	25394689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_25240547_25245217_25245273_25286315_25286393_25286503_25286636_25291573_25291721_25294049_25294105_25303229_25303390_25371658_25371760_25386147_25386451_25389396
transcript_33716.known	chr13	+	627	1	FSM	ENSMUSG00000060198.8	ENSMUST00000180940.2	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	26676536	26677163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_26676500_26677200
transcript_33717.known	chr13	+	607	1	FSM	ENSMUSG00000113061.2	ENSMUST00000223428.2	607	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAAAATTTAGTAATA	NA	False	NA	-4	True	AATAAA	-15	NA	28441510	28442117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_28441500_28442100
transcript_33718.known	chr13	-	4795	1	FSM	ENSMUSG00000076431.5	ENSMUST00000067230.6	4795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTTTTGTCATCCTT	NA	False	NA	0	True	AATAAA	-24	NA	29137696	29132901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_29132900_29137700
transcript_33723.known	chr13	-	2629	16	FSM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	17.6728291138937	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTTTATTGGACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	30039657	29509283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_33726.known	chr13	-	2019	12	FSM	ENSMUSG00000006191.18	ENSMUST00000131792.8	2019	12	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.5292313007885	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	30039626	29657850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_33728.known	chr13	-	694	6	FSM	ENSMUSG00000006191.18	ENSMUST00000129231.2	694	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	95.4136258612993	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTCTAGAGAAGACCTG	NA	False	NA	NA	False	NA	NA	NA	30039648	30020977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_30021054_30022497_30022686_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_33730.nic	chr13	-	539	5	ISM	ENSMUSG00000006191.18	ENSMUST00000123641.8	907	7	-32	68376	-15	79	5prime_fragment	FALSE	canonical	3	157	junction_1	20.481699148264	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGAGGGAATCCCCAT	NA	False	NA	NA	False	NA	NA	NA	30039672	29961199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_33732.known	chr13	-	4579	7	FSM	ENSMUSG00000016477.19	ENSMUST00000222730.2	4579	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_6	51.741075451607	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTGGATGGATTTTCT	NA	False	NA	-3	True	AATAAA	-22	NA	30168374	30090557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102761_30104096_30104209_30168110
transcript_33734.known	chr13	-	5097	7	FSM	ENSMUSG00000016477.19	ENSMUST00000102948.11	5097	7	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	17.007351351695	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTGGATGGATTTTCT	NA	False	NA	-3	True	AATAAA	-22	NA	30170046	30090557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102779_30104096_30104209_30169282
transcript_33742.known	chr13	+	2905	13	FSM	ENSMUSG00000038732.16	ENSMUST00000047311.16	2905	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	4.03026742978125	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTTTGTATCAAGACG	NA	False	NA	NA	False	AATAAA	-43	NA	30320471	30430700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_30320746_30378518_30378665_30379692_30379771_30386307_30386404_30403618_30403675_30406356_30406412_30408365_30408550_30410255_30410449_30415946_30416051_30419672_30419738_30421945_30422079_30425146_30425299_30429331
transcript_33745.known	chr13	+	854	2	FSM	ENSMUSG00000038732.16	ENSMUST00000153269.3	854	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTGGTTAGTTCAT	NA	False	NA	NA	False	ATTAAA	-22	NA	30320471	30347608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_30320746_30347028
transcript_33746.known	chr13	-	1363	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	0	644	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATTATTTTGTTGAA	NA	False	NA	-2	True	ATTAAA	-19	NA	30729345	30724290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_30725325_30729016
transcript_33747.known	chr13	+	1161	8	FSM	ENSMUSG00000069255.14	ENSMUST00000091672.13	1161	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	7.4258236676383	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGTGCAGTGTGTTCT	NA	False	NA	9	True	AATAAA	-22	NA	30843981	30895214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659_30892733_30894688
transcript_33748.known	chr13	+	3015	7	FSM	ENSMUSG00000069255.14	ENSMUST00000095914.7	3015	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	5.61001089323561	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGTGCAGTGTGTTCT	NA	False	NA	9	True	AATAAA	-22	NA	30844083	30895214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659
transcript_33751.nnic	chr13	-	4354	29	NIC	ENSMUSG00000021357.15	novel	4375	29	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_28	35.6224533640437	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGTGTTTGTGTCTTCA	NA	False	NA	-2	True	AATAAA	-20	NA	31158076	30997901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31130347_31130407_31157978
transcript_33754.known	chr13	-	4256	28	FSM	ENSMUSG00000021357.15	ENSMUST00000021785.8	4256	28	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_19	19.2909994862811	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGTGTTTGTGTCTTCA	NA	False	NA	-2	True	AATAAA	-20	NA	31158037	30997901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
transcript_33759.known	chr13	-	1187	1	FSM	ENSMUSG00000076430.2	ENSMUST00000102943.2	1187	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTGAAACAATTATTGTAT	NA	False	NA	NA	False	AATAAA	-15	NA	31131742	31130555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_31130600_31131700
transcript_33761.known	chr13	-	1713	11	FSM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	9.43186089804128	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTTGCTGTGTATGTT	NA	False	NA	-4	True	ATTAAA	-26	NA	32522723	32003561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_32003962_32004124_32004194_32101602_32101700_32124466_32124586_32284339_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
transcript_33762.nic	chr13	-	1185	8	ISM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	-45	120912	-45	-120912	5prime_fragment	FALSE	canonical	3	65	junction_2	9.94269293788875	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGTGTAAGTACATCCG	NA	False	NA	NA	False	NA	NA	NA	32522768	32124473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_32124586_32284339_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
transcript_33763.known	chr13	-	2003	7	FSM	ENSMUSG00000038372.15	ENSMUST00000178294.8	2003	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	9.08142181721685	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAAACATTTATAG	NA	False	NA	NA	False	NA	NA	NA	32522568	32283209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
transcript_33765.known	chr13	+	2633	7	FSM	ENSMUSG00000021400.9	ENSMUST00000021832.7	2633	7	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	20.5081284697881	622	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCAGTTCTTCAGTGTT	NA	False	NA	14	True	AATAAA	-15	NA	32986020	33006592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_32987028_32989320_32989513_32990741_32990984_33000235_33000466_33004201_33004358_33005021_33005102_33005866
transcript_33768.known	chr13	-	1918	7	FSM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.85382677011	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGCAATCCAATAAATTG	4869	False	NA	NA	False	AATAAA	-25	NA	33035168	33026074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
transcript_33771.known	chr13	+	2193	7	FSM	ENSMUSG00000042842.12	ENSMUST00000110293.9	2193	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	2.08166599946613	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTCTTCTTCTTTTGAG	NA	False	NA	NA	False	AATAAA	-26	NA	33149191	33163050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_33149527_33152482_33152658_33155453_33155607_33156229_33156348_33158879_33159023_33161507_33161664_33161937
transcript_33772.known	chr13	+	3253	7	FSM	ENSMUSG00000021403.4	ENSMUST00000006392.3	3253	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	6.66874967458085	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGCCTGATCTTTATT	NA	False	NA	NA	False	NA	NA	NA	33211398	33225867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_33211584_33213434_33213613_33216898_33217037_33217509_33217628_33219498_33219642_33221954_33222111_33223532
transcript_33775.known	chr13	-	1325	7	FSM	ENSMUSG00000052180.16	ENSMUST00000110273.9	1325	7	0	0	0	0	multi-exon	FALSE	canonical	3	772	junction_6	71.5830908028488	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089153	34063798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
transcript_33776.known	chr13	-	1327	7	FSM	ENSMUSG00000052180.16	ENSMUST00000172184.2	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	317.289431486984	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCAGAACCGAGTGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	34089691	34063799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089625
transcript_33780.nnic	chr13	-	1238	6	NIC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-88	0	combination_of_known_splicesites	FALSE	canonical	3	94	junction_5	331.741827329627	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089241	34063798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34089090
transcript_33786.known	chr13	+	3266	11	FSM	ENSMUSG00000021408.16	ENSMUST00000021844.15	3266	11	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_7	4.38634243989226	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAGTGTGCTGTACAAA	NA	False	NA	1	True	NA	NA	NA	34186345	34217660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_34186690_34193583_34193804_34194527_34194685_34197232_34197371_34199108_34199341_34200979_34201130_34205363_34205441_34210724_34210816_34211700_34212235_34214022_34214164_34216478
transcript_33790.known	chr13	+	6472	11	FSM	ENSMUSG00000021408.16	ENSMUST00000167374.9	6472	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	13.0076900332073	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTAAAGGCTTGCTACCA	NA	False	NA	NA	False	AATAAA	-14	NA	34186856	34221130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_34186937_34193583_34193804_34194527_34194685_34197232_34197371_34199108_34199341_34200979_34201130_34205363_34205441_34210724_34210816_34211700_34212235_34214022_34214164_34216478
transcript_33792.known	chr13	+	1063	8	FSM	ENSMUSG00000046949.17	ENSMUST00000021843.13	1063	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	70.4179939898249	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTTGCACTGTATTAG	NA	False	NA	13	True	AATACA	-25	NA	34148733	34169629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_34148784_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
transcript_33796.known	chr13	-	1654	8	FSM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	180.800939134278	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	8372	False	NA	2	True	AATAAA	-28	NA	34120066	34101900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555_34119778_34119904
transcript_33798.known	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	171.60728779539	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8459	False	NA	-7	True	AATAAA	-19	NA	34119979	34101909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119609_34119778_34119904
transcript_33801.known	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000076532.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	178.591998815222	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	NA	False	NA	2	True	AATAAA	-28	NA	34186777	34101900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34180225_34180335_34186652
transcript_33802.known	chr13	+	3842	7	FSM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	21.7995922489899	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCCTCTCATTTATATC	NA	False	NA	14	True	ATTAAA	-18	NA	34148669	34172426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_34148784_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
transcript_33808.nic	chr13	-	1584	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	145.701464188479	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8564	False	NA	-7	True	AATAAA	-19	NA	34119874	34101909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551
transcript_33809.nic	chr13	-	1524	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	152.257092518615	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8574	False	NA	-7	True	AATAAA	-19	NA	34119864	34101909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119601
transcript_3381.known	chr1	-	1725	11	FSM	ENSMUSG00000005501.15	ENSMUST00000186315.2	1725	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_9	4.93558507170123	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAAATCAGCTTGTCAT	NA	False	NA	NA	False	ACTAAA	-17	NA	87936250	87913476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
transcript_33811.nic	chr13	-	1402	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_6	142.613697331872	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8548	False	NA	-7	True	AATAAA	-19	NA	34119890	34101909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119749
transcript_33812.known	chr13	-	1547	7	FSM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_6	98.4119742036845	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	8257	False	NA	2	True	AATAAA	-28	NA	34120181	34101900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
transcript_33817.known	chr13	-	2191	4	FSM	ENSMUSG00000060147.16	ENSMUST00000171985.2	2191	4	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_3	88.7731190545126	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACAAAAAGGTGTCTT	8477	False	NA	NA	False	AATAAA	-5	NA	34119961	34107606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34109413_34114007_34114161_34115454_34115630_34119904
transcript_3382.nic	chr1	+	749	4	ISM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	-29	29033	-29	-287	5prime_fragment	FALSE	canonical	3	363	junction_2	19.7033556081755	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATCTTTTCCCTCTTTG	4041	False	NA	NA	False	ATTAAA	-17	NA	87780979	87843179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821
transcript_33820.known	chr13	+	1253	7	FSM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	28.0356915377524	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221579	34258057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
transcript_33823.nic	chr13	+	1075	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	72.3972375163583	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221590	34258057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_34221753_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
transcript_33824.nic	chr13	+	1160	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	96.2808392152873	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221614	34258057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_34221862_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
transcript_33825.known	chr13	+	2009	5	FSM	ENSMUSG00000038286.12	ENSMUST00000221124.2	2009	5	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	18.4932420089069	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGAGACAGCTCTCCAT	NA	False	NA	NA	False	AATAAA	-15	NA	34221621	34245869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416
transcript_33827.known	chr13	+	761	5	FSM	ENSMUSG00000038286.12	ENSMUST00000222658.2	761	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	101.124922744099	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCTTCTTACAGCTTC	NA	False	NA	NA	False	NA	NA	NA	34221614	34248016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_34221862_34228406_34228511_34234263_34234418_34244416_34244549_34247892
transcript_33829.known	chr13	-	1610	4	FSM	ENSMUSG00000058672.8	ENSMUST00000056427.10	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	19.2006944318862	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCTTTTCTCTTCAACA	NA	False	NA	NA	False	AATAAA	-22	NA	34261990	34258256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34259512_34260160_34260272_34260531_34260641_34261855
transcript_3383.known	chr1	-	1661	2	FSM	ENSMUSG00000005501.15	ENSMUST00000189586.2	1661	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	AGTAAA	-14	NA	87936272	87933616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_87935165_87936159
transcript_33833.known	chr13	-	2182	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTACACACGCTCAGCAA	NA	False	NA	NA	False	NA	NA	NA	34314337	34310730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
transcript_33834.known	chr13	-	430	4	FSM	ENSMUSG00000045136.7	ENSMUST00000220744.2	430	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	229.248046156705	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACGTGGTGAGGAAGGA	NA	False	NA	NA	False	NA	NA	NA	34314449	34312443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314310
transcript_33835.known	chr13	+	555	3	FSM	ENSMUSG00000071451.11	ENSMUST00000147632.3	555	3	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	31.5	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCATTTTACTTTGTTTT	NA	False	NA	22	True	AATAAA	-22	NA	34346946	34362156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_34347233_34350043_34350120_34361963
transcript_33836.known	chr13	+	474	2	FSM	ENSMUSG00000071451.11	ENSMUST00000124996.8	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	False	NA	17	True	AATAAA	-17	NA	34346946	34362151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_34347233_34361963
transcript_33837.known	chr13	-	503	5	FSM	ENSMUSG00000038267.16	ENSMUST00000143353.2	503	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.86154146165801	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGCTATCCATGACATC	NA	False	NA	NA	False	NA	NA	NA	34528186	34405352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34405383_34405885_34406055_34482979_34483135_34489140_34489245_34528141
transcript_33839.known	chr13	-	2684	5	FSM	ENSMUSG00000021411.17	ENSMUST00000053459.15	2684	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2.06155281280883	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGATGTTTGTGTAAAAAA	NA	False	NA	NA	False	AATAAA	-27	NA	34837469	34811816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_34812872_34814333_34814446_34822147_34822266_34822989_34823082_34836162
transcript_33844.known	chr13	+	7844	15	FSM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_7	21.2239035437088	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTCTACTGGCATTTTC	NA	False	NA	14	True	AATAAA	-19	NA	35059284	35090047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375
transcript_33846.known	chr13	+	1727	2	FSM	ENSMUSG00000021413.10	ENSMUST00000221639.2	1727	2	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGTGAATATAAAGAT	NA	False	NA	NA	False	TTTAAA	-3	NA	35059486	35068749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_35059678_35067213
transcript_3385.known	chr1	+	2297	6	FSM	ENSMUSG00000054545.18	ENSMUST00000113134.8	2297	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTACTCTTCTTTTCAT	7014	False	NA	NA	False	AATAAA	-15	NA	88062530	88146719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_88062658_88066194_88067054_88142765_88142898_88143516_88143605_88143859_88144080_88145848
transcript_33851.known	chr13	-	1347	9	FSM	ENSMUSG00000021416.12	ENSMUST00000021853.12	1347	9	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_1	1.69096865730859	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACTGTAAAATTAATACT	NA	False	NA	NA	False	NA	NA	NA	35147793	35130596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_35131074_35132054_35132199_35132727_35132818_35136963_35137085_35138064_35138165_35140843_35140914_35143856_35144046_35144383_35144483_35147736
transcript_33855.known	chr13	-	1746	10	FSM	ENSMUSG00000021417.16	ENSMUST00000021854.14	1746	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	45.5959170795038	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTAAGAATTCATGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	35178264	35161731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177812
transcript_33856.known	chr13	-	1395	10	FSM	ENSMUSG00000021417.16	ENSMUST00000110251.9	1395	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	51.0630208542878	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCAAGCCTTAAGAAT	NA	False	NA	NA	False	AATAAA	-8	NA	35178115	35161739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
transcript_33858.nic	chr13	-	1541	10	NIC	ENSMUSG00000021417.16	novel	1426	10	NA	NA	-17	0	combination_of_known_junctions	TRUE	canonical	3	26	junction_9	51.9781530555072	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178144	35161730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177996
transcript_3386.known	chr1	-	1051	1	FSM	ENSMUSG00000081984.4	ENSMUST00000119972.4	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCACTGTTATGTTCTAG	NA	False	NA	NA	False	ATTAAA	-15	NA	88133504	88132453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_88132500_88133500
transcript_33862.nnic	chr13	+	3307	8	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2902	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	86.1488981534948	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGAGTGTTTCTCTGCG	NA	False	NA	18	True	AATAAA	-19	NA	35922393	36058046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_35922622_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
transcript_33866.nnic	chr13	+	3223	7	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2893	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_1	63.2334739060114	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGAGTGTTTCTCTGCG	NA	False	NA	18	True	AATAAA	-19	NA	35922402	36058046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_35922622_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
transcript_33868.known	chr13	+	3575	7	FSM	ENSMUSG00000059288.15	ENSMUST00000163595.3	3575	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	71.2031522398334	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGGGAGTGTTTCT	NA	False	NA	13	True	AATAAA	-43	NA	35925295	36058041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_35925872_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
transcript_33873.nnic	chr13	+	2474	6	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	90683	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	80.650852444348	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGAGTGTTTCTCTGCG	NA	False	NA	18	True	AATAAA	-19	NA	36037477	36058046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_36037615_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
transcript_33883.nnic	chr13	-	1029	8	NNC	ENSMUSG00000021418.16	novel	4380	8	NA	NA	321	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_7	192.402639041683	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTCACACCTTGCTTGT	NA	False	NA	-14	True	CATAAA	-15	NA	36089990	36080694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36089945
transcript_33884.known	chr13	-	4380	8	FSM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	45.6195446836425	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCATTTTGTGTATTGTC	NA	False	NA	NA	False	NA	NA	NA	36090342	36077454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
transcript_33886.known	chr13	-	3269	6	FSM	ENSMUSG00000021418.16	ENSMUST00000174852.2	3269	6	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	23.0338880782207	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTCACACCTTGCTTGT	NA	False	NA	-14	True	CATAAA	-15	NA	36090311	36080694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36087740_36088401_36088547_36090186
transcript_33887.known	chr13	+	2361	2	FSM	ENSMUSG00000050423.12	ENSMUST00000132661.2	2361	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCGGTCCCTTGCCATAG	NA	False	NA	NA	False	AATAAA	-26	NA	36151835	36154371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_36151966_36152140
transcript_33889.known	chr13	-	2086	3	FSM	ENSMUSG00000046573.8	ENSMUST00000053265.8	2086	3	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_1	9.5	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACCCAGCTAAACTGGAC	NA	False	NA	NA	False	NA	NA	NA	36301509	36162377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_36163891_36276788_36276910_36301057
transcript_3389.nnic	chr1	-	4194	9	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	-12	-645	at_least_one_novel_splicesite	FALSE	non_canonical	3	150	junction_1	84.2673387202895	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCAATGTCGGTCTGCCC	8579	False	NA	-22	True	AATAAA	-16	NA	88205367	88190837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_88194001_88194051_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
transcript_33891.known	chr13	+	2125	7	FSM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	25.2300526268883	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36301394	36721567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_33892.nic	chr13	+	1718	7	NIC	ENSMUSG00000021420.14	novel	2125	7	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	85.194711625129	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTGACATAGCATTTGTC	NA	False	NA	6	True	AATAAA	-17	NA	36301586	36721564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_36301777_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_33893.known	chr13	+	962	6	FSM	ENSMUSG00000021420.14	ENSMUST00000099582.4	962	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	98.7886633172046	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAACTGGAGTGTCTG	NA	False	NA	-75	True	NA	NA	NA	36301840	36721483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_36301989_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_33900.known	chr13	+	8436	13	FSM	ENSMUSG00000039087.18	ENSMUST00000128570.9	8436	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	29.1099448451708	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGACCAACCTGTGAGTTC	NA	False	NA	6	True	AATAAA	-22	NA	38010290	38135981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38010321_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38125518_38125681_38130832_38131640_38132618
transcript_33905.known	chr13	+	7437	10	FSM	ENSMUSG00000039087.18	ENSMUST00000110238.10	7437	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	27.5053305720281	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCTACCATTTTCTTA	NA	False	NA	NA	False	ATTAAA	-33	NA	38010013	38119521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38010321_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533
transcript_33906.known	chr13	-	9333	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	0	0	0	0	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGCCTCCAAAGATGAG	5846	False	NA	NA	False	AATAAA	-18	NA	38178193	38155376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
transcript_33915.known	chr13	+	2738	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTTGCATTCTTGCTA	4488	False	NA	18	True	AATAAA	-19	NA	38220970	38245409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
transcript_3392.known	chr1	-	4878	8	FSM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_7	57.9852197916479	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGGGTGCAGGTTTGGC	8591	False	NA	NA	False	AATAAA	-24	NA	88205355	88190192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
transcript_33925.known	chr13	+	2509	3	FSM	ENSMUSG00000021428.10	ENSMUST00000223910.2	2509	3	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_2	6	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTACAGAGTGATTTCCGG	4738	False	NA	NA	False	NA	NA	NA	38221220	38229046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38221508_38224048_38224251_38227026
transcript_33926.known	chr13	+	7761	24	FSM	ENSMUSG00000054889.11	ENSMUST00000127906.8	7761	24	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_23	4.83137195933534	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTGTGTTTTGATTTCT	6530	False	NA	35	True	AATAAA	-17	NA	38335303	38382553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38335771_38348739_38348843_38351491_38351641_38352581_38352757_38356754_38356884_38357793_38357845_38359043_38359206_38360371_38360477_38361162_38361259_38362409_38362536_38363023_38363177_38365073_38365229_38366177_38366305_38367090_38367293_38367921_38368149_38369071_38369239_38369548_38369688_38370570_38370765_38371716_38371880_38372425_38372510_38373521_38373630_38374370_38374470_38375336_38375835_38378671
transcript_33931.nic	chr13	+	3212	20	ISM	ENSMUSG00000054889.11	ENSMUST00000124830.3	9592	24	-52	10092	-52	6251	5prime_fragment	FALSE	canonical	3	11	junction_1	4.38266542559285	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGAAGAAGTGCATAAAAT	6444	False	NA	NA	False	NA	NA	NA	38335217	38372461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_38335771_38348739_38348843_38351491_38351641_38352581_38352757_38356754_38356884_38357793_38357845_38359043_38359206_38360371_38360477_38361162_38361259_38362409_38362536_38363023_38363177_38365073_38365229_38366177_38366305_38367090_38367293_38367921_38368149_38369071_38369239_38369548_38369688_38370570_38370765_38371716_38371880_38372425
transcript_33932.nic	chr13	+	2925	17	ISM	ENSMUSG00000054889.11	ENSMUST00000124830.3	9592	24	-158	12866	-158	3477	5prime_fragment	FALSE	canonical	3	11	junction_1	3.63145976158349	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAACGTAAACAGTCGGAAC	6338	False	NA	NA	False	GATAAA	-28	NA	38335111	38369687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_38335771_38348739_38348843_38351491_38351641_38352581_38352757_38356754_38356884_38357793_38357845_38359043_38359206_38360371_38360477_38361162_38361259_38362409_38362536_38363023_38363177_38365073_38365229_38366177_38366305_38367090_38367293_38367921_38368149_38369071_38369239_38369548
transcript_33935.known	chr13	+	9592	24	FSM	ENSMUSG00000054889.11	ENSMUST00000124830.3	9592	24	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	5.11863048791702	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTGTGTTTTGATTTCT	6496	False	NA	35	True	AATAAA	-17	NA	38335269	38382553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38335771_38348739_38348843_38351491_38351641_38352581_38352757_38356754_38356884_38357793_38357845_38359043_38359206_38360371_38360477_38361162_38361259_38362409_38362536_38363023_38363177_38365073_38365229_38366177_38366305_38367090_38367293_38367921_38368149_38369071_38369239_38369548_38369688_38370570_38370765_38371716_38371880_38372425_38372510_38373521_38373630_38374370_38374470_38375336_38377632_38378671
transcript_33940.known	chr13	+	1785	9	FSM	ENSMUSG00000021431.16	ENSMUST00000091641.13	1785	9	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_6	66.7082032062025	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGAAGTGCTGTGTG	NA	False	NA	25	True	ATTAAA	-26	NA	38388920	38411641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
transcript_33945.nic	chr13	+	1044	8	ISM	ENSMUSG00000021431.16	ENSMUST00000091641.13	1785	9	-56	6277	-49	3913	5prime_fragment	FALSE	canonical	1	67	junction_6	70.6165269434218	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGGTGAGTGTCTACCTC	NA	False	NA	NA	False	AATAAA	-31	NA	38388864	38405364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210
transcript_33949.known	chr13	+	871	6	FSM	ENSMUSG00000021431.16	ENSMUST00000223557.2	871	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	91.8267934755429	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGACGTTAGAATGATCT	NA	False	NA	NA	False	AATACA	-40	NA	38388913	38399406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38398644_38399039
transcript_33950.nic	chr13	+	1503	5	ISM	ENSMUSG00000021431.16	ENSMUST00000223557.2	871	6	-49	-187	-49	187	intron_retention	FALSE	canonical	3	102	junction_4	60.6356949329353	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTCACTGTGCAGCTCA	NA	False	NA	NA	False	NA	NA	NA	38388864	38399593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580
transcript_33952.known	chr13	+	6689	8	FSM	ENSMUSG00000021431.16	ENSMUST00000223680.2	6689	8	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_4	51.484889798377	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGTTTGAAGTGCTGTG	NA	False	NA	23	True	ATTAAA	-24	NA	38388926	38411639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38400490_38401349_38404753_38405210_38405370_38410849
transcript_33953.known	chr13	+	3740	4	FSM	ENSMUSG00000021431.16	ENSMUST00000223814.2	3740	4	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	12.8149218578274	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATGAAAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	38388914	38398417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042
transcript_33954.known	chr13	+	3593	7	FSM	ENSMUSG00000039004.7	ENSMUST00000171970.3	3593	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	1.15470053837925	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACCAAATTGTACCACT	NA	False	NA	NA	False	AAAAAG	-15	NA	38529082	38684278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_38530564_38653589_38653783_38668866_38669016_38669714_38669913_38681270_38681348_38682692_38682804_38682894
transcript_33960.known	chr13	-	2586	10	FSM	ENSMUSG00000038991.18	ENSMUST00000160653.2	2586	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	335.794947718962	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAAGTCTGGTCTTTGC	NA	False	NA	NA	False	AATAAA	-17	NA	38711890	38684248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38711650
transcript_33961.known	chr13	-	2843	10	FSM	ENSMUSG00000038991.18	ENSMUST00000035988.16	2843	10	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_6	103.236992125933	2348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGAGTCTTACTTTCTA	NA	False	NA	NA	False	TTTAAA	-17	NA	38712466	38684054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38712163
transcript_33969.known	chr13	-	5634	5	FSM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.98262211161084	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGAATGGGGATGTGTG	NA	False	NA	NA	False	AATAAA	-26	NA	38819085	38782816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_38788005_38796618_38796678_38803065_38803196_38814968_38815052_38818911
transcript_33971.known	chr13	-	2553	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	0	0	0	0	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGTTGGTGACAACCTATC	NA	False	NA	NA	False	AATAAA	-21	NA	38843034	38828182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
transcript_33973.known	chr13	-	822	3	FSM	ENSMUSG00000001707.9	ENSMUST00000223823.2	822	3	0	0	0	0	multi-exon	FALSE	canonical	3	1400	junction_2	45.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCTCCGATTGCAGCTAG	NA	False	NA	NA	False	NA	NA	NA	38842931	38838495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_38839068_38840015_38840217_38842882
transcript_33974.known	chr13	-	533	2	FSM	ENSMUSG00000001707.9	ENSMUST00000224487.2	533	2	0	0	0	0	multi-exon	FALSE	canonical	3	1400	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAACAAGAGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	38842986	38839787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_38840217_38842882
transcript_33977.known	chr13	-	2216	10	FSM	ENSMUSG00000021432.16	ENSMUST00000225432.2	2216	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	14.9004929904357	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAAGGTGGGAAGAAC	NA	False	NA	NA	False	AATAAA	-15	NA	39144800	39116115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144407
transcript_33980.known	chr13	-	1778	10	FSM	ENSMUSG00000021432.16	ENSMUST00000167513.3	1778	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	18.3127830951868	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTTTTAATAGAATTTG	NA	False	NA	NA	False	AATAAA	-24	NA	39144505	39116280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144385
transcript_33985.known	chr13	-	802	9	FSM	ENSMUSG00000021432.16	ENSMUST00000224645.2	802	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	12.4473892845046	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTGGCTTGTTAGTTGT	NA	False	NA	NA	False	NA	NA	NA	39144483	39116885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139796_39139913_39144407
transcript_3399.nic	chr1	-	725	3	ISM	ENSMUSG00000044783.17	ENSMUST00000147393.2	2030	5	-139	9734	-12	0	5prime_fragment	FALSE	canonical	3	259	junction_2	28.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCCTCTTTTCTTCCTC	8579	False	NA	NA	False	AAGAAA	-10	NA	88205367	88202433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_88202820_88204940_88205008_88205095
transcript_33994.known	chr13	-	1321	2	FSM	ENSMUSG00000021432.16	ENSMUST00000224854.2	1321	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAGGAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	39144508	39138692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_39139913_39144407
transcript_33998.known	chr13	+	4352	3	FSM	ENSMUSG00000021360.17	ENSMUST00000110191.10	4352	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	71.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAGGAATAGTGGATATT	NA	False	NA	15	True	AATAAA	-20	NA	41013229	41114363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_41014750_41107051_41107148_41111627
transcript_33999.nnic	chr13	+	4145	3	NNC	ENSMUSG00000021360.17	novel	3929	3	NA	NA	-456	0	intron_retention	FALSE	canonical	1	3	junction_1	89	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAGGAATAGTGGATATT	NA	False	NA	15	True	AATAAA	-20	NA	41040212	41114363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_41041526_41107051_41107148_41111627
transcript_34.known	ERCC-00095	+	513	1	FSM	ERCC-00095A	DQ516759	513	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00095_+_0_500
transcript_340.nic	chr1	+	3221	2	ISM	ENSMUSG00000051285.18	ENSMUST00000061280.17	5232	6	0	50511	0	-37785	5prime_fragment	FALSE	canonical	3	138	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATGTAGGCAATGACTAA	NA	False	NA	NA	False	NA	NA	NA	7159143	7193341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_7159441_7190417
transcript_3400.known	chr1	-	2780	2	FSM	ENSMUSG00000044783.17	ENSMUST00000126739.2	2780	2	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCCTCTTTTCTTCCTC	8645	False	NA	NA	False	AAGAAA	-10	NA	88205301	88202433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_88205008_88205095
transcript_34000.known	chr13	+	3929	3	FSM	ENSMUSG00000021360.17	ENSMUST00000069958.15	3929	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	65	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATAGTGGATATTTATT	NA	False	NA	19	True	AATAAA	-24	NA	41040668	41114367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_41041762_41107051_41107148_41111627
transcript_34002.known	chr13	+	4038	3	FSM	ENSMUSG00000021360.17	ENSMUST00000067778.8	4038	3	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	29	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATAGTGGATATTTATTT	NA	False	NA	20	True	AATAAA	-25	NA	41071076	41114368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_41072278_41107051_41107148_41111627
transcript_34003.known	chr13	+	1366	2	FSM	ENSMUSG00000021360.17	ENSMUST00000225759.2	1366	2	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAATAAAAAGC	NA	False	NA	NA	False	AAAACA	-18	NA	41071125	41107265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_41072278_41107051
transcript_34004.known	chr13	+	1722	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCTTAATTACATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	41154498	41166491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
transcript_34008.known	chr13	+	1757	9	FSM	ENSMUSG00000038683.17	ENSMUST00000174472.3	1757	9	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_2	42.5147033389626	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAGCTTAATTACATTT	NA	False	NA	NA	False	AGTAAA	-26	NA	41154741	41166489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
transcript_34014.nic	chr13	+	834	5	ISM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	-42	4088	-42	310	5prime_fragment	FALSE	canonical	3	613	junction_2	28.1824413420839	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAGGAAAGTGAGTATT	NA	False	NA	NA	False	CATAAA	-4	NA	41154456	41162403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361
transcript_34017.known	chr13	+	1155	3	FSM	ENSMUSG00000038683.17	ENSMUST00000173238.8	1155	3	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_2	34.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAGACAGACAGAAA	NA	False	NA	NA	False	NA	NA	NA	41154499	41162093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_41154890_41158212_41158376_41161491
transcript_34018.known	chr13	+	914	6	FSM	ENSMUSG00000021361.8	ENSMUST00000021790.7	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_2	43.7154434954056	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	False	NA	15	True	AATAAA	-22	NA	41169767	41176062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_41169875_41170590_41170650_41171181_41171259_41171831_41171934_41174594_41174683_41175581
transcript_34022.nnic	chr13	+	879	5	NIC	ENSMUSG00000021361.8	novel	914	6	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	3	108	junction_1	251.069089097005	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	False	NA	15	True	AATAAA	-22	NA	41169743	41176062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_41169875_41171181_41171259_41171831_41171934_41174594_41174683_41175581
transcript_34026.known	chr13	-	3073	5	FSM	ENSMUSG00000021362.8	ENSMUST00000021791.8	3073	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	4.84767985741633	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTAATCTCTTCAAGAG	NA	False	NA	NA	False	NA	NA	NA	41263659	41254903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_41257166_41258044_41258171_41258886_41259000_41259124_41259378_41263340
transcript_34043.known	chr13	-	3840	8	FSM	ENSMUSG00000021364.17	ENSMUST00000021793.15	3840	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	7.79848232226067	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTAGATTCTTAATTCA	7559	False	NA	NA	False	AATAAA	-18	NA	41373881	41335856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373830
transcript_34047.known	chr13	+	4483	2	FSM	ENSMUSG00000091264.4	ENSMUST00000165561.4	4483	2	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGCCTCATTGGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	41403319	41430053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_41403791_41426041
transcript_34049.known	chr13	-	1046	8	FSM	ENSMUSG00000058022.15	ENSMUST00000179758.8	1046	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	8.48046975980333	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTCTTGGGATCTCCT	NA	False	NA	-35	True	AATAAA	-13	NA	42001092	41918065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_41918090_41918120_41918269_41920811_41920964_41930983_41931100_41967690_41967793_41969613_41969749_41981618_41981862_42000966
transcript_34052.known	chr13	+	2139	5	FSM	ENSMUSG00000021367.9	ENSMUST00000021796.9	2139	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.44948974278318	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTTGTGAATTATTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	42454951	42461466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_42455435_42457032_42457202_42458421_42458581_42458730_42458845_42460252
transcript_34053.known	chr13	+	716	5	FSM	ENSMUSG00000054728.18	ENSMUST00000136576.8	716	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	2.29128784747792	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGATTCTGTGTGCAGGA	NA	False	NA	NA	False	NA	NA	NA	43276332	43288887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_43276531_43281613_43281676_43286395_43286537_43287402_43287480_43288649
transcript_34057.known	chr13	-	1246	8	FSM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_7	48.9393627307283	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGTGGCCATGATG	NA	False	NA	-17	True	AGTAAA	-16	NA	43324960	43305215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
transcript_34058.known	chr13	-	1239	8	FSM	ENSMUSG00000021368.16	ENSMUST00000021797.9	1239	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_7	94.4833426632246	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCCTGGCGTGGCCAT	NA	False	NA	-21	True	AGTAAA	-12	NA	43324977	43305219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324804
transcript_3406.known	chr1	+	479	3	FSM	ENSMUSG00000097398.3	ENSMUST00000181016.3	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682611	88683458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_88682681_88682805_88683013_88683255
transcript_34061.known	chr13	-	6928	2	FSM	ENSMUSG00000051335.7	ENSMUST00000055341.7	6928	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGATTCCAGCCTGGTCTT	NA	False	NA	-4	True	AATAAA	-15	NA	43457648	43348720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_43354721_43456720
transcript_34063.known	chr13	+	1398	9	FSM	ENSMUSG00000054021.7	ENSMUST00000223194.2	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	63.0811729044411	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43518981	43548679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_43519021_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
transcript_34065.nic	chr13	+	1500	9	NIC	ENSMUSG00000054021.7	novel	1367	8	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_8	20.7710736361893	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATTTTTTTGTACTT	NA	False	NA	9	True	ATTAAA	-21	NA	43519074	43548678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
transcript_3407.known	chr1	+	358	3	FSM	ENSMUSG00000097398.3	ENSMUST00000180596.2	358	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATTAAAGTTGAACCTT	NA	False	NA	-10	True	NA	NA	NA	88682675	88683431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_88682774_88682928_88683013_88683255
transcript_34070.nnic	chr13	+	829	4	NNC	ENSMUSG00000054021.7	novel	1548	9	NA	NA	3209	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	91.3649580285328	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATTTTTTTGTACTT	4656	False	NA	9	True	ATTAAA	-21	NA	43536357	43548678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_43536481_43536584_43536709_43538973_43539090_43548212
transcript_34073.known	chr13	+	1367	8	FSM	ENSMUSG00000054021.7	ENSMUST00000066804.5	1367	8	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_7	21.27372625027	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATTTTTTTGTACTT	NA	False	NA	9	True	ATTAAA	-21	NA	43524185	43548678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
transcript_34080.known	chr13	+	1800	8	FSM	ENSMUSG00000063200.5	ENSMUST00000071926.5	1800	8	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	87.1250567299906	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGACATGTAATACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	43551865	43556337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
transcript_34084.nic	chr13	+	539	5	ISM	ENSMUSG00000063200.5	ENSMUST00000222499.2	756	7	-88	748	-86	-748	5prime_fragment	FALSE	canonical	3	1274	junction_1	73.494897782091	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAACTCCAAGAAAGT	NA	False	NA	NA	False	AAAAAG	-22	NA	43551779	43554363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328
transcript_34087.nic	chr13	+	496	4	ISM	ENSMUSG00000063200.5	ENSMUST00000222499.2	756	7	-88	1022	-86	-1022	5prime_fragment	FALSE	canonical	3	1274	junction_1	84.4209031513457	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTAAAAGGTATGACTTGTC	NA	False	NA	8	True	CATAAA	-16	NA	43551779	43554089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068
transcript_34089.nic	chr13	+	475	3	ISM	ENSMUSG00000063200.5	ENSMUST00000222499.2	756	7	-88	2066	-86	0	5prime_fragment	FALSE	canonical	3	1274	junction_1	102.5	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTATTGCAGTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	43551779	43553045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_43552135_43552210_43552272_43552986
transcript_3409.known	chr1	+	4995	6	FSM	ENSMUSG00000036206.13	ENSMUST00000066279.11	4995	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	14.3164241345386	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTGGACATTTCAAC	NA	False	NA	12	True	ATTAAA	-22	NA	88998136	89082790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_88998320_89034979_89035059_89065280_89065526_89071271_89073629_89079921_89080111_89080848
transcript_34091.known	chr13	+	220	2	FSM	ENSMUSG00000063200.5	ENSMUST00000220997.2	220	2	0	0	0	0	multi-exon	FALSE	canonical	3	1479	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTATTGCAGTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	43552110	43553045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_43552272_43552986
transcript_34092.known	chr13	+	843	2	FSM	ENSMUSG00000112983.2	ENSMUST00000222336.2	843	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTTCTCTTGCTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	43683695	43685257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_43683855_43684573
transcript_34094.known	chr13	-	4339	9	FSM	ENSMUSG00000021371.6	ENSMUST00000021800.6	4339	9	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	32.5720355519885	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGTACAGTGTTTTA	NA	False	NA	NA	False	AATAAA	-29	NA	43713637	43691868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_43695206_43697931_43698047_43699163_43699218_43702126_43702199_43703007_43703050_43704472_43704575_43705072_43705177_43708371_43708492_43713244
transcript_341.known	chr1	-	388	1	FSM	ENSMUSG00000098201.2	ENSMUST00000182051.2	388	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAATGTAAATCATAAATA	NA	False	NA	NA	False	AAAACA	-31	NA	7206810	7206422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_7206400_7206800
transcript_34100.known	chr13	-	3191	6	FSM	ENSMUSG00000021371.6	ENSMUST00000223353.2	3191	6	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_5	20.8134571851963	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAATAAAACAA	NA	False	NA	NA	False	NA	NA	NA	43713667	43699798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_43702199_43703007_43703050_43704472_43704575_43705072_43705177_43708371_43708492_43713244
transcript_34102.known	chr13	+	3544	2	FSM	ENSMUSG00000044164.3	ENSMUST00000059986.3	3544	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATGGTTCCCCTGATTT	3644	False	NA	NA	False	ATTAAA	-21	NA	43769185	43824421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_43769544_43821235
transcript_34103.known	chr13	+	2477	5	FSM	ENSMUSG00000015396.5	ENSMUST00000015540.4	2477	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTGTTCTTCTTTTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	43938250	43956608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_43938727_43938821_43938944_43951008_43951205_43953077_43953185_43955032
transcript_34112.known	chr13	+	5019	19	FSM	ENSMUSG00000038518.16	ENSMUST00000044608.14	5019	19	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	177.530035712966	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCCATCCCTTTTGTAC	9933	False	NA	NA	False	NA	NA	NA	44884298	45074471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_44884411_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
transcript_34117.known	chr13	+	4135	19	FSM	ENSMUSG00000038518.16	ENSMUST00000173704.8	4135	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	182.476448674857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTTGTACGTAGATATC	9884	False	NA	NA	False	ATTAAA	-8	NA	44884249	45073584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_44884365_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
transcript_34126.known	chr13	+	5997	18	FSM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_5	80.8182205637225	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTTGTGGGAAGGG	NA	False	NA	16	True	AATAAA	-18	NA	44884746	45075119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
transcript_3413.nic	chr1	+	2654	3	ISM	ENSMUSG00000036206.13	ENSMUST00000066279.11	4995	6	-17	15135	-17	-15135	5prime_fragment	FALSE	canonical	3	96	junction_1	8	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCCAGACGGTCAGGG	NA	False	NA	NA	False	NA	NA	NA	88998119	89067655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_88998320_89034979_89035059_89065280
transcript_34141.nic	chr13	+	3491	16	NIC	ENSMUSG00000038518.16	novel	4135	19	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	192.170826783533	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGGAAAATGGTCCCA	9894	False	NA	NA	False	NA	NA	NA	44884259	45067795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_44884389_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721
transcript_34144.nic	chr13	+	3754	15	ISM	ENSMUSG00000038518.16	ENSMUST00000173704.8	4135	19	547	5789	34	0	internal_fragment	FALSE	canonical	3	632	junction_5	75.1147761218572	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGGAAAATGGTCCCA	NA	False	NA	NA	False	NA	NA	NA	44884796	45067795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721
transcript_34149.known	chr13	-	1362	10	FSM	ENSMUSG00000057531.15	ENSMUST00000072329.15	1362	10	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_2	46.8187996428785	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGCAGCTGGTGAGTA	NA	False	NA	NA	False	AATAAA	-15	NA	45155623	45075554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_45075931_45076624_45076769_45084471_45084628_45106647_45106671_45123521_45123655_45136216_45136350_45139510_45139572_45145494_45145546_45147160_45147215_45155392
transcript_3415.nic	chr1	+	4179	19	NIC	ENSMUSG00000055013.17	novel	11921	18	NA	NA	-31	-235	combination_of_known_junctions	FALSE	canonical	3	33	junction_13	123.248268963378	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTAAACGAAATCATGAAT	NA	False	NA	18	True	AAAACA	-45	NA	89382496	89817488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_89383315_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89694027_89694187_89716884_89717047_89751578_89751657_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
transcript_34154.known	chr13	-	1231	8	FSM	ENSMUSG00000057531.15	ENSMUST00000222805.2	1231	8	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_1	179.905303888871	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAATGCCTCTTTGCTTCT	NA	False	NA	NA	False	AATGAA	-20	NA	45155567	45105258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_45105860_45106647_45106671_45123521_45123655_45136216_45136350_45139510_45139572_45145494_45145546_45147160_45147215_45155392
transcript_34156.known	chr13	+	3065	7	FSM	ENSMUSG00000038175.11	ENSMUST00000038275.11	3065	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	5.98377435700541	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCTTTGTGATCTTAT	4395	False	NA	NA	False	AATAAA	-15	NA	45543217	45565498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_45543520_45544664_45544856_45557875_45558062_45559368_45559567_45560032_45560198_45561831_45562253_45563896
transcript_34158.nnic	chr13	+	1686	10	NNC	ENSMUSG00000000253.14	novel	1580	9	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	25.8370965001015	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGCTGGAGTTTGCGT	NA	False	NA	22	True	AATATA	-16	NA	45660906	45699858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45674602_45674696_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
transcript_34160.known	chr13	+	1580	9	FSM	ENSMUSG00000000253.14	ENSMUST00000000260.13	1580	9	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	10.0428768288773	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGCTGGAGTTTGCGT	NA	False	NA	22	True	AATATA	-16	NA	45660919	45699858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
transcript_34161.known	chr13	+	3713	13	FSM	ENSMUSG00000021373.17	ENSMUST00000021802.16	3713	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	4.58257569495584	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTTTTGTTGTCAATA	NA	False	NA	NA	False	AATAAA	-7	NA	46655323	46803757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_46655688_46678890_46679013_46684452_46684554_46713979_46714058_46763071_46763216_46763539_46763626_46768725_46768832_46789096_46789287_46791324_46791498_46793298_46793423_46793515_46793599_46800001_46800143_46801756
transcript_34167.nnic	chr13	+	3662	6	NNC	ENSMUSG00000069237.9	novel	3664	5	NA	NA	-79	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.234034851256	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCAACAGTGTTGTCTG	NA	False	NA	7	True	AATAAA	-7	NA	46822918	46831532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_46823556_46823636_46823732_46824684_46824806_46827021_46827146_46827728_46827869_46828987
transcript_34170.nnic	chr13	+	3655	6	NNC	ENSMUSG00000069237.9	novel	3664	5	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.234034851256	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCAACAGTGTTGTCTG	NA	False	NA	7	True	AATAAA	-7	NA	46822932	46831532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_46823556_46823629_46823732_46824684_46824806_46827021_46827146_46827728_46827869_46828987
transcript_34171.known	chr13	+	3664	5	FSM	ENSMUSG00000069237.9	ENSMUST00000099547.4	3664	5	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_4	10.8972473588517	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCAACAGTGTTGTCTG	NA	False	NA	7	True	AATAAA	-7	NA	46822997	46831532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_46823732_46824684_46824806_46827021_46827146_46827728_46827869_46828987
transcript_34177.known	chr13	-	6109	22	FSM	ENSMUSG00000021374.11	ENSMUST00000021803.10	6109	22	0	0	0	0	multi-exon	TRUE	canonical	3	242	junction_11	30.6722857910241	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTACAACCCTTTCTGTTTG	NA	False	NA	-33	True	AATAAA	-1	NA	46881416	46833380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_46834719_46834999_46835169_46836472_46836746_46837358_46837713_46840098_46840975_46842534_46842727_46846987_46847594_46850121_46850245_46853124_46853210_46854464_46854564_46855079_46855215_46858115_46858243_46858644_46858692_46861222_46861370_46863104_46863159_46863241_46863287_46863387_46863505_46866108_46866238_46866316_46866457_46867096_46867346_46870576_46870800_46880835
transcript_34188.nic	chr13	-	1771	9	ISM	ENSMUSG00000021374.11	ENSMUST00000021803.10	6109	22	-93	27849	-93	2158	5prime_fragment	FALSE	canonical	3	251	junction_1	26.191303423083	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGTGTGAGTTTGTTTG	NA	False	NA	NA	False	GATAAA	-3	NA	46881509	46861229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_46861370_46863104_46863159_46863241_46863287_46863387_46863505_46866108_46866238_46866316_46866457_46867096_46867346_46870576_46870800_46880835
transcript_34193.nic	chr13	-	3493	26	ISM	ENSMUSG00000021375.12	ENSMUST00000056978.8	6866	38	-84	29817	65	0	5prime_fragment	FALSE	canonical	3	30	junction_15	9.44491397525674	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAAAGGTATGTGATG	NA	False	NA	NA	False	ATTAAA	-40	NA	47083278	46932379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_46932470_46938721_46938869_46939988_46940122_46941533_46941686_46944809_46944984_46947366_46947529_46951817_46951968_46952668_46952810_46954756_46954920_46955991_46956206_46962366_46962534_46962633_46962721_46964166_46964298_46966204_46966340_46967635_46967747_46968685_46968899_46969762_46969875_46977424_46977538_46978681_46978817_46980168_46980257_46984269_46984451_46986199_46986293_47001801_47001863_47018294_47018308_47082691_47082783_47083042
transcript_34196.known	chr13	-	3917	16	FSM	ENSMUSG00000021375.12	ENSMUST00000223881.2	3917	16	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	16.4059609762902	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCAAAGTGTTGATCGTC	NA	False	NA	-6	True	AATACA	-16	NA	46940114	46902570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_46904103_46905556_46906349_46914138_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988
transcript_342.known	chr1	+	2048	1	FSM	ENSMUSG00000061024.9	ENSMUST00000072079.9	2048	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTGCATTATTTTTGTA	NA	False	NA	19	True	AATAAA	-19	NA	9615632	9617680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_9615600_9617700
transcript_3420.known	chr1	+	11921	18	FSM	ENSMUSG00000055013.17	ENSMUST00000027521.15	11921	18	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_11	41.2693909545293	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAGAGAGACCAAT	NA	False	NA	NA	False	AAAACA	-6	NA	89382527	89825339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_89383315_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89694027_89694187_89716884_89717047_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
transcript_34202.known	chr13	-	707	3	FSM	ENSMUSG00000021375.12	ENSMUST00000225904.2	707	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAAATCCTTTATTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	46947524	46941310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_46941686_46944809_46944984_46947366
transcript_34203.known	chr13	-	2294	1	FSM	ENSMUSG00000044231.4	ENSMUST00000052747.4	2294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCTGGAAACGTGTCTT	NA	False	NA	-1	True	AATAAA	-18	NA	47168326	47166032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_47166000_47168300
transcript_34204.known	chr13	+	4987	21	FSM	ENSMUSG00000038080.18	ENSMUST00000037025.16	4987	21	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	9.84682690007294	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGTTTTTGAAGCTGTG	1161	False	NA	NA	False	TATAAA	-20	NA	47196974	47238755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_47197147_47201378_47201479_47202653_47202782_47204085_47204176_47205264_47205377_47207094_47207212_47212251_47212291_47214228_47214458_47216433_47216619_47217529_47217707_47218046_47218122_47220920_47221059_47221939_47222112_47225367_47225496_47227186_47227319_47227829_47227905_47230858_47230976_47231743_47231870_47232658_47232776_47233911_47234065_47236350
transcript_34209.known	chr13	-	2556	11	FSM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	1333	junction_10	113.482333426838	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259666	47238257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_34214.known	chr13	-	2708	9	FSM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	22.6436387314407	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGAGCTTGGTAATTT	NA	False	NA	NA	False	AATAAA	-16	NA	47196686	47177018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
transcript_34219.nic	chr13	-	1031	8	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	-3	3707	-3	106	5prime_fragment	FALSE	canonical	3	1333	junction_7	124.152473735701	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTCCAAAAAAGGTACATTA	NA	False	NA	5	True	NA	NA	NA	47259669	47241964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_34220.nic	chr13	-	972	8	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	-38	3801	-27	12	5prime_fragment	FALSE	canonical	3	1333	junction_7	124.152473735701	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAACAGAAAGCTACTGC	NA	False	NA	-89	True	AAAAAG	-19	NA	47259704	47242058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_34223.nic	chr13	-	943	7	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	-42	13373	-31	0	5prime_fragment	FALSE	canonical	3	1333	junction_6	133.111482099279	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTGTTTTAAGCTGTT	NA	False	NA	26	True	AAGAAA	-12	NA	47259708	47251630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_34224.nic	chr13	-	812	7	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	-30	13492	-19	-119	5prime_fragment	FALSE	canonical	3	1333	junction_6	133.111482099279	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGTCAAAGCAAACTAAA	NA	False	NA	-93	True	AGTAAA	-29	NA	47259696	47251749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_34228.nic	chr13	-	754	6	ISM	ENSMUSG00000021377.16	ENSMUST00000135278.8	744	7	-31	10748	-31	-1188	5prime_fragment	FALSE	canonical	3	1333	junction_5	145.518933476026	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGGCCACTCTTTACCT	NA	False	NA	NA	False	NA	NA	NA	47259708	47252818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_34230.nic	chr13	-	703	5	ISM	ENSMUSG00000021377.16	ENSMUST00000135278.8	744	7	-122	11600	-122	1292	5prime_fragment	FALSE	canonical	3	1333	junction_4	162.302764917915	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGAAGAAATGTTGAAAA	NA	False	NA	NA	False	TATAAA	-3	NA	47259799	47253670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_34232.known	chr13	-	596	4	FSM	ENSMUSG00000021377.16	ENSMUST00000143933.2	596	4	0	0	0	0	multi-exon	FALSE	canonical	3	1333	junction_3	176.083944627429	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTGAGACACACATTTG	NA	False	NA	NA	False	NA	NA	NA	47259630	47254962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_47255209_47255448_47255551_47259047_47259214_47259548
transcript_34234.nic	chr13	-	350	3	ISM	ENSMUSG00000021377.16	ENSMUST00000143933.2	596	4	-77	563	-30	-563	5prime_fragment	FALSE	canonical	3	1333	junction_2	210	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAGAAGAAGAAAGTAG	NA	False	NA	NA	False	NA	NA	NA	47259707	47255525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_47255551_47259047_47259214_47259548
transcript_34235.known	chr13	-	468	2	FSM	ENSMUSG00000021377.16	ENSMUST00000150652.2	468	2	0	0	0	0	multi-exon	FALSE	canonical	3	1333	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGTATTTGCCAAGGT	NA	False	NA	NA	False	NA	NA	NA	47259659	47258856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_47259214_47259548
transcript_34236.known	chr13	-	876	6	FSM	ENSMUSG00000021377.16	ENSMUST00000129352.3	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	1443	junction_3	105.718494124727	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTGTTTTAAGCTGTT	NA	False	NA	26	True	AAGAAA	-12	NA	47259306	47251630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
transcript_34237.known	chr13	-	744	7	FSM	ENSMUSG00000021377.16	ENSMUST00000135278.8	744	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	585.902437839839	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAGCAAAACA	NA	False	NA	-101	True	AAAAAG	-7	NA	47259677	47242070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_47242092_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_34238.known	chr13	+	3849	3	FSM	ENSMUSG00000021379.3	ENSMUST00000021810.3	3849	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	7	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGAAGTTTGTGGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	48414703	48419502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_48415415_48415760_48415824_48416427
transcript_34244.known	chr13	-	672	3	FSM	ENSMUSG00000097326.3	ENSMUST00000180777.3	672	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTTGTATGTGTGATA	NA	False	NA	1	True	ATTAAA	-15	NA	48427360	48425888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_48426292_48426385_48426533_48427238
transcript_34246.known	chr13	-	417	5	FSM	ENSMUSG00000050954.16	ENSMUST00000176949.2	417	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.34428877022476	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGTGTGTGCTGAATG	NA	False	NA	NA	False	NA	NA	NA	48666902	48644805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_48644873_48651798_48651895_48652255_48652383_48660382_48660470_48666862
transcript_34248.known	chr13	+	786	2	FSM	ENSMUSG00000053181.2	ENSMUST00000065465.2	786	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAATAAAATCAGT	3977	False	NA	NA	False	AGTAAA	-22	NA	48667045	48668335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_48667106_48667609
transcript_34249.known	chr13	-	3164	11	FSM	ENSMUSG00000038042.12	ENSMUST00000222028.2	3164	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	6.6340033162488	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAACTTGAAGCCT	NA	False	NA	NA	False	AATACA	-15	NA	48779057	48732685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_48733320_48734230_48734342_48736560_48736747_48739407_48740655_48742595_48742734_48743762_48743882_48744101_48744183_48745961_48746134_48751233_48751417_48759748_48759837_48778852
transcript_3425.known	chr1	+	10065	18	FSM	ENSMUSG00000055013.17	ENSMUST00000074945.8	10065	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	170.646217326635	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGTGCTTCTGTGGAGT	NA	False	NA	10	True	AATAAA	-16	NA	89507957	89822999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_89509376_89532319_89532379_89537217_89537306_89538005_89538018_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89716884_89717047_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
transcript_34251.known	chr13	-	4402	10	FSM	ENSMUSG00000038042.12	ENSMUST00000035824.11	4402	10	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_8	3.87138919781874	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACCCCGTCTTGTGGTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	48779140	48731347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_48733320_48734230_48734342_48736560_48736747_48739407_48740655_48742595_48742734_48743762_48743882_48744101_48744183_48745961_48746134_48759748_48759837_48778852
transcript_34253.known	chr13	+	1399	4	FSM	ENSMUSG00000021381.5	ENSMUST00000021813.5	1399	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.942809041582063	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGACTTGATAGCGGG	NA	False	NA	NA	False	AATAAA	-16	NA	48816473	48819983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_48816816_48818501_48818794_48818876_48818962_48819303
transcript_34254.known	chr13	-	5494	22	FSM	ENSMUSG00000038025.9	ENSMUST00000035540.9	5494	22	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_1	5.86043268042677	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTGTCTGTCGTGCTT	NA	False	NA	0	True	AGTAAA	-23	NA	49024595	48955225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_48957164_48957810_48958199_48958706_48958817_48959300_48959397_48961080_48961353_48966384_48966546_48967178_48967250_48967341_48967521_48969430_48969547_48969910_48970031_48970981_48971342_48971777_48971868_48973015_48973108_48973516_48973624_48974001_48974090_48975006_48975170_48976424_48976612_48979527_48979670_48982261_48982423_48985479_48985595_48988685_48988772_49024143
transcript_34260.known	chr13	-	5105	18	FSM	ENSMUSG00000038014.8	ENSMUST00000060805.7	5105	18	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_8	31.720775722809	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATGGTGTGGCTTTTA	6383	False	NA	-18	True	AATAAA	-21	NA	49121493	49032694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_49034572_49038748_49038846_49039212_49039355_49042599_49042738_49043230_49043415_49045356_49045567_49051135_49051251_49055533_49055784_49063731_49063907_49066332_49066561_49068337_49068426_49075157_49075442_49075628_49075727_49085772_49085870_49087425_49087555_49099417_49099501_49102532_49102780_49120830
transcript_34265.known	chr13	+	706	4	FSM	ENSMUSG00000037966.16	ENSMUST00000131280.2	706	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	185.030327844443	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACCTGAGACATGTGGG	NA	False	NA	NA	False	NA	NA	NA	49341011	49349235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_49341114_49347211_49347441_49348314_49348534_49349079
transcript_34266.known	chr13	+	1187	4	FSM	ENSMUSG00000037966.16	ENSMUST00000049022.15	1187	4	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	21.013223349966	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGTTCCATGTGCCA	NA	False	NA	13	True	AATAAA	-15	NA	49340960	49349720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_49341114_49347211_49347441_49348369_49348534_49349079
transcript_34267.nic	chr13	+	2151	3	NIC	ENSMUSG00000037966.16	novel	1187	4	NA	NA	-35	0	intron_retention	FALSE	canonical	3	395	junction_2	1.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGTTCCATGTGCCA	NA	False	NA	13	True	AATAAA	-15	NA	49340925	49349720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_49341114_49347211_49348534_49349079
transcript_34270.known	chr13	-	937	7	FSM	ENSMUSG00000037960.12	ENSMUST00000221443.2	937	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_6	169.781231785691	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCGAATGTCTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	49369336	49356425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49363564_49363680_49369229
transcript_34272.nic	chr13	-	928	6	NIC	ENSMUSG00000037960.12	novel	937	7	NA	NA	60	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	138.488411067497	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCGAATGTCTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	49369442	49356425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369229
transcript_34274.known	chr13	-	804	6	FSM	ENSMUSG00000037960.12	ENSMUST00000048946.7	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_5	10.4115320678563	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTGTCGAATGTCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	49369502	49356426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369412
transcript_34279.nic	chr13	-	1009	5	NIC	ENSMUSG00000037960.12	novel	804	6	NA	NA	-54	0	intron_retention	FALSE	canonical	3	362	junction_4	11.146748404804	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCGAATGTCTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	49369567	49356425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_49356712_49357193_49357465_49358667_49358822_49361479_49361623_49369412
transcript_3428.known	chr1	+	4078	17	FSM	ENSMUSG00000055013.17	ENSMUST00000190096.7	4078	17	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_11	88.5197497384058	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCACCCATGTTAATTTAT	NA	False	NA	39	True	AATAAA	-40	NA	89382595	89817723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_89383315_89532319_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89716884_89717047_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
transcript_34284.known	chr13	-	1418	5	FSM	ENSMUSG00000021384.15	ENSMUST00000058196.13	1418	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	5.02493781056044	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGGTTGGCAGAATGCT	NA	False	NA	NA	False	CATAAA	-25	NA	49401770	49384165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_49384808_49390899_49391089_49392264_49392413_49393958_49394148_49401520
transcript_34288.nic	chr13	+	2871	9	NIC	ENSMUSG00000037933.17	novel	4588	8	NA	NA	-62	0	intron_retention	FALSE	canonical	0	0	junction_8	20.4110111214511	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGCTTT	1366	False	NA	NA	False	NA	NA	NA	49494998	49538624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518_49536730_49537813_49537902_49538446
transcript_34290.known	chr13	+	4488	9	FSM	ENSMUSG00000037933.17	ENSMUST00000110084.4	4488	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	16.5562488203095	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGTGCCCTCTGTGATTG	1434	False	NA	17	True	AATAAA	-24	NA	49495066	49540501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_49495118_49495221_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518_49536730_49538446
transcript_34291.known	chr13	+	4588	8	FSM	ENSMUSG00000037933.17	ENSMUST00000110085.11	4588	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	11.2213353638031	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCCCTCTGTGATTGC	1439	False	NA	18	True	AATAAA	-25	NA	49495071	49540502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518_49536730_49538446
transcript_34294.known	chr13	+	6309	7	FSM	ENSMUSG00000037933.17	ENSMUST00000048544.14	6309	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	11.1616904335021	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACATGCGTGCCCTCTG	1428	False	NA	11	True	AATAAA	-18	NA	49495060	49540495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_49495387_49522904_49523118_49528692_49528846_49531365_49531828_49532483_49533510_49534046_49534199_49536518
transcript_34298.known	chr13	-	1144	8	FSM	ENSMUSG00000021391.11	ENSMUST00000021818.9	1144	8	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_6	22.1387092889263	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806261	49617498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
transcript_34301.nnic	chr13	-	972	6	NIC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	81.0668859646157	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806267	49617498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49803596_49803776_49806058
transcript_34302.nic	chr13	-	706	4	ISM	ENSMUSG00000021391.11	ENSMUST00000221751.2	2059	6	-164	82331	-146	-82331	5prime_fragment	FALSE	canonical	3	162	junction_2	16.0831174424198	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCTGTTTTACAAATTT	NA	False	NA	NA	False	NA	NA	NA	49806407	49794701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_49794791_49801041_49801131_49803596_49803776_49806058
transcript_34303.nic	chr13	-	617	3	ISM	ENSMUSG00000021391.11	ENSMUST00000221751.2	2059	6	-164	88671	-146	-88671	5prime_fragment	FALSE	canonical	3	162	junction_1	19	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTAGCTTGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	49806407	49801041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_49801131_49803596_49803776_49806058
transcript_34304.nic	chr13	-	527	2	ISM	ENSMUSG00000021391.11	ENSMUST00000221751.2	2059	6	-164	91227	-146	-91227	5prime_fragment	FALSE	canonical	3	200	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACACATCATTTTTTAAC	NA	False	NA	5	True	NA	NA	NA	49806407	49803597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_49803776_49806058
transcript_34307.known	chr13	+	4421	13	FSM	ENSMUSG00000021385.11	ENSMUST00000220447.2	4421	13	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	16.41053184865	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTATGACATTTTCAACT	NA	False	NA	NA	False	ATTAAA	-29	NA	49574724	49618049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_49574943_49584344_49584393_49585845_49585942_49587304_49587372_49588945_49589068_49590186_49590277_49595428_49595488_49596897_49596971_49599778_49600053_49602712_49602864_49603456_49603560_49612088_49612169_49615009
transcript_34319.known	chr13	+	4381	17	FSM	ENSMUSG00000021392.9	ENSMUST00000221142.2	4381	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	40.4735639028737	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTCTTTTATTTAAAAA	NA	False	NA	23	True	ATTAAA	-16	NA	49806814	49832492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_49807159_49807826_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
transcript_34321.nic	chr13	+	3454	12	ISM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	14	8952	-11	31	5prime_fragment	FALSE	canonical	3	122	junction_6	9.90700561878202	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATTGGAGTCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	49806567	49823262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184
transcript_34324.nic	chr13	+	3302	11	ISM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	6	11330	4	-2347	5prime_fragment	FALSE	canonical	3	122	junction_6	10.3831594420966	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGAATGTTGTGCAAAGT	NA	False	NA	NA	False	GATAAA	-38	NA	49806559	49820884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830
transcript_34327.nic	chr13	+	3247	10	ISM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	6	13270	4	-4287	5prime_fragment	FALSE	canonical	3	122	junction_6	10.785220797662	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAACTATTTTATTGTTCA	NA	False	NA	NA	False	AAGAAA	-1	NA	49806559	49818944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854
transcript_34329.nic	chr13	+	1101	6	ISM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	8	18719	6	-1128	5prime_fragment	FALSE	canonical	3	136	junction_5	6.18384993349612	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCTTTGGTTGGCATTTC	NA	False	NA	NA	False	CATAAA	-2	NA	49806561	49813495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425
transcript_34330.known	chr13	+	600	6	FSM	ENSMUSG00000021392.9	ENSMUST00000222333.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	55.5215273565128	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCTGTGCCTGGAACAGA	NA	False	NA	NA	False	NA	NA	NA	49806825	49812271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_49806874_49807004_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171
transcript_34331.nic	chr13	+	940	5	ISM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	6	20000	4	-57	5prime_fragment	FALSE	canonical	3	140	junction_1	5.53962995154008	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACAACAGGCAACCCCAC	NA	False	NA	NA	False	AAGAAA	-30	NA	49806559	49812214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171
transcript_34332.nic	chr13	+	844	4	ISM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	6	22038	4	-53	5prime_fragment	FALSE	canonical	3	140	junction_1	3.77123616632825	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAAGGTGGAACACTACA	NA	False	NA	NA	False	TTTAAA	-11	NA	49806559	49810176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150
transcript_34333.nic	chr13	+	893	4	ISM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	10	21985	8	0	5prime_fragment	FALSE	canonical	3	140	junction_1	3.77123616632825	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGATTTGCCTCACATTT	NA	False	NA	NA	False	AAGAAA	-14	NA	49806563	49810229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150
transcript_34341.known	chr13	+	4396	34	FSM	ENSMUSG00000037851.14	ENSMUST00000047363.14	4396	34	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_17	328.385946197822	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835605	49887743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865312_49868288_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
transcript_34344.nic	chr13	+	4468	34	NIC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	1	120	junction_1	357.515439185776	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835638	49887743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
transcript_34347.nnic	chr13	+	4773	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	1	66	junction_1	364.511447064866	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835669	49887743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_49836121_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
transcript_3438.known	chr1	+	1372	2	FSM	ENSMUSG00000092627.3	ENSMUST00000173856.2	1372	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAAAGCGAGTCTTTTA	NA	False	NA	-14	True	NA	NA	NA	89857955	89859584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_89858176_89858432
transcript_34386.known	chr13	+	1798	10	FSM	ENSMUSG00000037816.11	ENSMUST00000046974.5	1798	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	4.29469957557504	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAGACACATTCCTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	50571899	50587805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_50572024_50573875_50573914_50577237_50577399_50577787_50577907_50579592_50579803_50580657_50580817_50585575_50585787_50586206_50586383_50586463_50586592_50587333
transcript_34398.known	chr13	+	4434	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_1	64.2227374066226	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTGGCTGTGAACTTT	NA	False	NA	NA	False	AATAAA	-13	NA	51254915	51306582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
transcript_3440.known	chr1	-	2135	2	FSM	ENSMUSG00000034486.9	ENSMUST00000036954.9	2135	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGCTTAATCCTTGGGG	NA	False	NA	NA	False	AATAAA	-20	NA	89858901	89855677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_89856866_89857954
transcript_34403.nnic	chr13	+	4536	6	NNC	ENSMUSG00000021395.12	novel	4434	6	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	289.12599329704	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTGGCTGTGAACTTT	NA	False	NA	NA	False	AATAAA	-13	NA	51254888	51306582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_51255102_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
transcript_34406.nnic	chr13	+	4636	6	NNC	ENSMUSG00000021395.12	novel	4434	6	NA	NA	319	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	296.576735432839	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTGGCTGTGAACTTT	NA	False	NA	NA	False	AATAAA	-13	NA	51255234	51306582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_51255548_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
transcript_34408.known	chr13	+	1167	2	FSM	ENSMUSG00000021396.6	ENSMUST00000021828.6	1167	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTCTGATGTCCTTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	51325057	51329224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_51325661_51328660
transcript_34409.known	chr13	+	4463	2	FSM	ENSMUSG00000067586.5	ENSMUST00000087978.5	4463	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGACTAGGTTTCATTTG	NA	False	NA	NA	False	AATAAA	-15	NA	51562674	51576833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_51562982_51572677
transcript_3441.known	chr1	+	3030	1	FSM	ENSMUSG00000092627.3	ENSMUST00000189763.2	3030	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAATTATT	NA	False	NA	NA	False	NA	NA	NA	89857982	89861012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_89858000_89861000
transcript_34410.known	chr13	+	692	3	FSM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	0	0	0	0	multi-exon	FALSE	canonical	3	3514	junction_2	7.5	924	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGTTGAAATTAATTTG	NA	False	NA	NA	False	AATAAA	-24	NA	51799267	51804696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_51799508_51803620_51803749_51804372
transcript_34415.known	chr13	+	3328	17	FSM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_13	19.2596363867546	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGCTATTGTGATCTT	5494	False	NA	8	True	AATAAA	-20	NA	51805732	51838080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
transcript_34418.nic	chr13	+	3228	17	NIC	ENSMUSG00000035139.15	novel	3328	17	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	37.006703362364	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGCTATTGTGATCTT	5484	False	NA	8	True	AATAAA	-20	NA	51805722	51838080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_51805857_51806642_51806792_51808531_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
transcript_3442.known	chr1	-	2060	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_8	12	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGTAATTTGGTCAC	NA	False	NA	-4	True	AATAAA	-17	NA	90017866	89969856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
transcript_34433.nic	chr13	+	1143	8	NIC	ENSMUSG00000035139.15	novel	3328	17	NA	NA	-10	4616	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	46.0461170779815	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGTCTAAACCGAGTTA	5484	False	NA	NA	False	AAAAAG	-16	NA	51805722	51824908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_51805857_51806642_51806792_51808531_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842
transcript_34436.known	chr13	+	1915	7	FSM	ENSMUSG00000035139.15	ENSMUST00000110044.2	1915	7	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	16.121069719125	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATCACATGATACTAC	5538	False	NA	NA	False	AGTAAA	-17	NA	51805776	51820292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307
transcript_34443.nnic	chr13	-	3209	18	NIC	ENSMUSG00000021451.17	novel	1249	5	NA	NA	13	0	combination_of_known_splicesites	TRUE	canonical	1	2	junction_2	67.7604165309136	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTCTCTAGGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-22	NA	51947770	51839564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_51840283_51841318_51841417_51845324_51845535_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51917287_51917357_51947532
transcript_34444.known	chr13	-	4472	17	FSM	ENSMUSG00000021451.17	ENSMUST00000110040.9	4472	17	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_15	57.0268234583516	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCAGCCTTTGCCTTA	NA	False	NA	-4	True	AATAAA	-20	NA	51947709	51855281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51888542_51888607_51917287_51917357_51947532
transcript_34445.known	chr13	-	4482	16	FSM	ENSMUSG00000021451.17	ENSMUST00000021900.14	4482	16	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_9	25.4317387005555	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCAGCCTTTGCCTTA	NA	False	NA	-4	True	AATAAA	-20	NA	51947783	51855281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51917287_51917357_51947532
transcript_34449.known	chr13	+	1071	4	FSM	ENSMUSG00000021453.3	ENSMUST00000021903.3	1071	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	4.02768199119819	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACTTAATGCCTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	52000713	52002504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_52000869_52001387_52001490_52001591_52001806_52001904
transcript_34454.nnic	chr13	+	3445	8	NNC	ENSMUSG00000113211.2	novel	3270	8	NA	NA	-14	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3.69776545872708	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTATAATCATGTATT	NA	False	NA	NA	False	NA	NA	NA	52250762	52278202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192_52276931_52277083
transcript_34456.nic	chr13	+	3598	7	ISM	ENSMUSG00000113211.2	ENSMUST00000220691.2	3270	8	-14	-8	-14	8	intron_retention	FALSE	canonical	2	4	junction_2	2.74873708374511	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTATAATCATGTATT	NA	False	NA	NA	False	NA	NA	NA	52250762	52278202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192
transcript_34458.known	chr13	+	3270	8	FSM	ENSMUSG00000113211.2	ENSMUST00000220691.2	3270	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	3.45229884959845	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAATGTGTGTATAAT	NA	False	NA	NA	False	NA	NA	NA	52250776	52278194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192_52276778_52277083
transcript_3446.nic	chr1	-	1388	10	ISM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-43	5522	-43	-5031	5prime_fragment	FALSE	canonical	3	59	junction_6	13.200261875442	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGCTATGAAATAATATTAT	NA	False	NA	NA	False	NA	NA	NA	90017909	89975378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
transcript_34464.known	chr13	+	5363	14	FSM	ENSMUSG00000021457.15	ENSMUST00000120135.8	5363	14	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	22.2489943925403	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTACGGATGCAGAC	NA	False	NA	NA	False	AATAAA	-22	NA	52737208	52802828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52778743_52778813_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
transcript_34466.known	chr13	+	2519	13	FSM	ENSMUSG00000021457.15	ENSMUST00000118756.8	2519	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	27.5650745207288	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCTCTGAGCCAATTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	52737472	52797650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_52737642_52750993_52751091_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075
transcript_34471.nic	chr13	+	4439	13	NIC	ENSMUSG00000021457.15	novel	5363	14	NA	NA	-436	-1281	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	14.4575528127458	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGAAGTTATTTTGTTGC	NA	False	NA	22	True	NA	NA	NA	52736772	52801537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
transcript_34472.nic	chr13	+	5395	13	NIC	ENSMUSG00000021457.15	novel	5363	14	NA	NA	-111	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	14.4575528127458	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTGATGACCTTTAC	NA	False	NA	NA	False	AATAAA	-12	NA	52737097	52802818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
transcript_34476.nic	chr13	+	2797	12	NIC	ENSMUSG00000021457.15	novel	2519	13	NA	NA	-111	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	14.5124625838599	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCTCTGAGCCAATTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	52737097	52797650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075
transcript_3448.known	chr1	+	3065	2	FSM	ENSMUSG00000044337.6	ENSMUST00000065587.5	3065	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTACATCCTTTGATGTT	NA	False	NA	NA	False	NA	NA	NA	90131701	90144473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_90131810_90141516
transcript_34481.nic	chr13	+	1681	8	NIC	ENSMUSG00000021457.15	novel	2519	13	NA	NA	-111	8726	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	9.67217764560615	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCACCGTTGACTCATT	NA	False	NA	NA	False	AAAAAG	-21	NA	52737097	52787101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923
transcript_34490.known	chr13	-	1320	10	FSM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_3	77.7090172246741	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083697	52989154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_34496.nnic	chr13	-	1212	8	NIC	ENSMUSG00000021460.18	novel	1320	10	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	139.021948054314	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083739	52989154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_34499.known	chr13	-	1400	6	FSM	ENSMUSG00000021460.18	ENSMUST00000128380.8	1400	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	92.9399806326642	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAATCTGAATGTTCTG	NA	False	NA	-3	True	AATAAA	-17	NA	53083684	53040463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_3450.known	chr1	+	2287	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGTGGGTTACCTAA	NA	False	NA	21	True	ATTAAA	-22	NA	90530702	90541063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
transcript_34500.known	chr13	-	1647	5	FSM	ENSMUSG00000021460.18	ENSMUST00000120535.8	1647	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	187.838361364233	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTTGGGTAGTGGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	53083688	53049962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_53051169_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_34506.known	chr13	-	2627	4	FSM	ENSMUSG00000021460.18	ENSMUST00000119311.8	2627	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	210.944437128727	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGGCTGCTCTCTCA	NA	False	NA	-24	True	AATAAA	-17	NA	53083690	53061080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_53063352_53073036_53073125_53073234_53073303_53083490
transcript_34507.nic	chr13	-	2716	4	NIC	ENSMUSG00000021460.18	novel	2627	4	NA	NA	-22	-2	combination_of_known_junctions	FALSE	canonical	1	7	junction_1	215.643223867573	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGAGGCTGCTCTCT	NA	False	NA	-26	True	AATAAA	-15	NA	53083739	53061082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_53063394_53073036_53073125_53073234_53073303_53083490
transcript_34508.known	chr13	-	3235	4	FSM	ENSMUSG00000021460.18	ENSMUST00000110031.4	3235	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	164.004742478855	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTTGGTCACAGTGC	NA	False	NA	NA	False	ATTAAA	-17	NA	53083717	53064245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_53067098_53073036_53073125_53073234_53073303_53083490
transcript_34510.known	chr13	-	2026	2	FSM	ENSMUSG00000056749.8	ENSMUST00000071065.8	2026	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCGGCTCTGTTCCACTT	NA	False	NA	1	True	AATAAA	-19	NA	53135109	53121244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_53123058_53134896
transcript_34517.nnic	chr13	-	3797	9	NNC	ENSMUSG00000021464.16	novel	3985	9	NA	NA	115180	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_8	35.4788669492136	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTATTATCTCTGGG	NA	False	NA	-28	True	NA	NA	NA	53314514	53263352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_53265705_53267083_53267287_53271170_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785_53286074_53300669_53300748_53314358
transcript_3452.nnic	chr1	+	1922	8	NNC	ENSMUSG00000034432.12	novel	2287	8	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	260.130579454525	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGCTCTAGAAATTT	NA	False	NA	25	True	AATAAA	-30	NA	90530750	90540846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_90531278_90532124_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
transcript_34520.known	chr13	-	3985	9	FSM	ENSMUSG00000021464.16	ENSMUST00000021918.10	3985	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	5.12195031213697	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTATTATCTCTGGG	NA	False	NA	-28	True	NA	NA	NA	53440160	53263352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_53265705_53267083_53267287_53271170_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785_53286074_53300669_53300748_53439816
transcript_3453.known	chr1	+	2593	7	FSM	ENSMUSG00000034432.12	ENSMUST00000191510.7	2593	7	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_6	25.9293913027925	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGCTCTAGAAATTT	NA	False	NA	25	True	AATAAA	-30	NA	90531197	90540846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_90531350_90532096_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
transcript_34542.known	chr13	-	2606	15	FSM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_11	13.0690864412232	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTGTTTGGATAGCAG	1829	False	NA	-18	True	AATAAA	-27	NA	53531433	53486783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53527364_53527460_53527997_53528106_53531328
transcript_34548.known	chr13	-	2453	2	FSM	ENSMUSG00000021469.10	ENSMUST00000021922.10	2453	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGTCTGTCCCAACTC	NA	False	NA	NA	False	ATTAAA	-18	NA	53627110	53620919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_53622630_53626367
transcript_34554.nnic	chr13	+	1361	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	-71	-1559	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_6	341.21576509169	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTCTGGTAGATTTTAAT	NA	False	NA	NA	False	NA	NA	NA	54225816	54260802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247571_54247638_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
transcript_34564.known	chr13	+	2783	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTCTTACTTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	54225887	54262361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
transcript_34575.known	chr13	-	2335	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTGTCTAAAGTTACTA	NA	False	NA	-3	True	AATAAA	-15	NA	54616662	54606649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
transcript_3458.known	chr1	+	4499	16	FSM	ENSMUSG00000026303.7	ENSMUST00000027528.7	4499	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.718021974284601	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTATTGTTTTGCTTT	NA	False	NA	NA	False	AATAAA	-24	NA	90842806	90878864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_90842976_90849566_90849701_90855704_90855927_90856044_90856158_90857811_90857916_90859215_90859339_90861038_90861244_90863034_90863175_90865375_90865460_90867080_90867234_90867441_90867598_90869409_90869503_90870593_90870681_90871416_90871472_90873335_90873437_90876304
transcript_34581.known	chr13	-	465	2	FSM	ENSMUSG00000025872.6	ENSMUST00000135404.2	465	2	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAGGAAAAGCTAGTGTG	NA	False	NA	NA	False	NA	NA	NA	54616639	54615616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54615796_54616353
transcript_34582.known	chr13	+	4819	10	FSM	ENSMUSG00000043183.19	ENSMUST00000121401.8	4819	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	7.33333333333333	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTAGACTCCAGGGCTTCT	NA	False	NA	17	True	AATAAA	-17	NA	54651591	54699103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54651818_54671782_54674486_54676116_54676350_54676966_54677037_54684894_54685050_54687516_54687670_54689236_54689366_54694789_54694947_54695067_54695153_54698195
transcript_34585.known	chr13	-	2727	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTGTCCATTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	54713248	54699030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
transcript_34591.known	chr13	-	2502	8	FSM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	177.014469603419	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	54713116	54699035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54712327_54712435_54712994
transcript_34600.known	chr13	-	720	6	FSM	ENSMUSG00000025871.19	ENSMUST00000143144.8	720	6	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_4	212.34443717696	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCATAAGGGCCTTACCAC	NA	False	NA	NA	False	NA	NA	NA	54713143	54704399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712322_54712435_54712994
transcript_34604.known	chr13	-	946	5	FSM	ENSMUSG00000025871.19	ENSMUST00000153708.2	946	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	214.957408572024	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCCTAGGTAAATTATGC	NA	False	NA	NA	False	TTTAAA	-33	NA	54713146	54700208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54712994
transcript_3461.known	chr1	-	1831	6	FSM	ENSMUSG00000026304.14	ENSMUST00000027529.12	1831	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.2	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTCATGAGGTTATATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	90897383	90885854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_90886722_90886889_90886984_90887723_90887850_90888832_90888985_90891865_90892026_90896951
transcript_34612.known	chr13	+	1046	4	FSM	ENSMUSG00000025870.11	ENSMUST00000026988.11	1046	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_3	14.6363322667334	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGCAGGCTCAGTGCC	2674	False	NA	NA	False	NA	NA	NA	54722827	54728941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54723091_54723562_54723762_54726605_54726782_54728533
transcript_34613.known	chr13	+	654	3	FSM	ENSMUSG00000025870.11	ENSMUST00000156024.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	15	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGGATTGCATGGCATA	2706	False	NA	NA	False	NA	NA	NA	54722859	54726829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54723091_54723562_54723762_54726605
transcript_34614.known	chr13	-	1756	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGATGCACTTTTATTT	NA	False	NA	-3	True	NA	NA	NA	54737903	54731997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
transcript_34615.known	chr13	+	648	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_1	0	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTCTTAATCTCATTCC	5978	False	NA	23	True	AATAAA	-27	NA	54738019	54738971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54738233_54738536
transcript_34617.known	chr13	-	2186	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTAAAGACTGTATTTTA	7405	False	NA	19	True	AATAAA	-41	NA	54759157	54740213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
transcript_3462.known	chr1	+	2050	13	FSM	ENSMUSG00000026305.16	ENSMUST00000068116.13	2050	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	28.0697296428416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGTGTGGGTTTTGTTT	NA	False	NA	NA	False	AATGAA	-9	NA	90926500	91056662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_90926616_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
transcript_3463.nic	chr1	+	2209	13	NIC	ENSMUSG00000026305.16	novel	2849	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	25.9117090649511	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGGTTTTGTTTTTTA	NA	False	NA	NA	False	AATGAA	-13	NA	90981175	91056666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
transcript_34630.nic	chr13	+	4397	12	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	187.610022816365	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCAGCTGTGGGTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	54769596	54811876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_54769717_54777202_54777278_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_34635.known	chr13	+	1748	11	FSM	ENSMUSG00000025873.17	ENSMUST00000026991.16	1748	11	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	87.926617130423	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATGAGGCTGACTTA	NA	False	NA	1	True	NA	NA	NA	54769636	54809399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_34640.known	chr13	+	4322	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	132.701770900015	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCAGCTGTGGGTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	54769596	54811876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_3465.nic	chr1	+	2218	12	NIC	ENSMUSG00000026305.16	novel	2849	23	NA	NA	-71	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	27.2156979494562	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGGTTTTGTTTTTTA	NA	False	NA	NA	False	AATGAA	-13	NA	90981094	91056666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
transcript_34661.nic	chr13	+	4224	10	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	-41	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_3	175.481418945317	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCAGCTGTGGGTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	54769555	54811876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_34673.known	chr13	+	3363	3	FSM	ENSMUSG00000025873.17	ENSMUST00000220453.2	3363	3	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_1	14	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAGGAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	54769613	54792422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54769717_54786062_54786132_54789231
transcript_34675.known	chr13	-	3941	11	FSM	ENSMUSG00000034928.17	ENSMUST00000177950.8	3941	11	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_10	160.927934181732	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTCTGGCTGCTCTCT	NA	False	NA	-5	True	AATAAA	-28	NA	54835621	54827211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54835306
transcript_34676.known	chr13	-	1689	11	FSM	ENSMUSG00000034928.17	ENSMUST00000128257.8	1689	11	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_10	190.55762907845	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAAGACTCCTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	54836072	54829377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54835843
transcript_34678.known	chr13	-	3797	11	FSM	ENSMUSG00000034928.17	ENSMUST00000134862.8	3797	11	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_7	149.659480154115	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCCCAAGCTGCCTCT	NA	False	NA	-16	True	AATAAA	-17	NA	54841720	54827222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831900_54832150_54832302_54841541
transcript_34680.known	chr13	-	4292	11	FSM	ENSMUSG00000034928.17	ENSMUST00000125871.8	4292	11	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_9	222.59883198256	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGCCTCTGGCTGCTCT	NA	False	NA	-7	True	AATAAA	-26	NA	54835907	54827213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831964_54832150_54832302_54835306
transcript_34683.nic	chr13	-	3866	11	NIC	ENSMUSG00000034928.17	novel	3734	11	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	163	junction_9	182.191547553667	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTCTGGCTGCTCTCT	NA	False	NA	-5	True	AATAAA	-28	NA	54841717	54827211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831964_54832150_54832302_54841541
transcript_34692.known	chr13	-	1351	6	FSM	ENSMUSG00000034891.14	ENSMUST00000036825.14	1351	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	35.7636687156114	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCGCCGCCTAGGCAGG	NA	False	NA	-1	True	AATAAA	-16	NA	54914408	54906672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54914117
transcript_34693.nic	chr13	+	1278	9	NIC	ENSMUSG00000025875.15	novel	1048	9	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_8	99.0959131347	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTTTATGTTCACCG	NA	False	NA	17	True	AATAAA	-18	NA	54937116	54944588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
transcript_34694.known	chr13	+	1585	8	FSM	ENSMUSG00000025875.15	ENSMUST00000026993.14	1585	8	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_3	20.9606044468071	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTATGTTCACCGT	NA	False	NA	18	True	AATAAA	-19	NA	54937189	54944589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
transcript_34705.known	chr13	+	712	6	FSM	ENSMUSG00000025875.15	ENSMUST00000163796.8	712	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	159.188441791482	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGACATCAAGGCGGTG	NA	False	NA	NA	False	NA	NA	NA	54937275	54944000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_54937495_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
transcript_34708.known	chr13	+	3827	15	FSM	ENSMUSG00000025876.16	ENSMUST00000109994.9	3827	15	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_1	2.26778683805536	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGAGTGTCGCTTCTCTTG	NA	False	NA	NA	False	AATAAA	-21	NA	55097223	55153831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55097545_55138692_55138915_55143609_55143754_55143972_55144077_55144216_55144398_55145728_55145894_55147148_55147338_55147434_55147738_55150278_55150367_55150645_55150815_55150995_55151230_55151354_55151505_55151590_55151756_55152290_55152470_55152618
transcript_34710.nnic	chr13	-	2252	16	NNC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	48.0872355435642	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248137	55176107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223272_55223564_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_34713.known	chr13	-	2936	15	FSM	ENSMUSG00000025878.17	ENSMUST00000127195.8	2936	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	39.2030949423795	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTGTCTGTTTAAACC	NA	False	NA	NA	False	AATAGA	-22	NA	55248113	55175692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223804_55224110_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_34718.known	chr13	-	2489	14	FSM	ENSMUSG00000025878.17	ENSMUST00000148702.8	2489	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	51.1669734457456	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGTGTTCCTGAATGAA	NA	False	NA	NA	False	NA	NA	NA	55248067	55176007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55223070_55223804_55224110_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_34719.nnic	chr13	-	2481	14	NIC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	49.8302443746553	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248137	55176107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_55176532_55177228_55177272_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_3472.nic	chr1	+	3728	9	NIC	ENSMUSG00000026305.16	novel	3645	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_5	16.4088390814219	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTACTGGTTGTTCTG	NA	False	NA	4	True	AATAAA	-18	NA	90981164	91045037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91042317
transcript_34721.known	chr13	-	1678	13	FSM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	37.4398591818339	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248113	55176107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_34722.known	chr13	-	2735	4	FSM	ENSMUSG00000025878.17	ENSMUST00000133187.2	2735	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	8.65383665716478	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAGTTAAAAAAAGAG	NA	False	NA	NA	False	TATAAA	-3	NA	55248112	55222948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55225341_55233422_55233508_55240939_55241095_55248009
transcript_34723.nic	chr13	-	279	3	ISM	ENSMUSG00000025878.17	ENSMUST00000133187.2	2735	4	35	10503	-10	0	5prime_fragment	FALSE	canonical	3	148	junction_2	10.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTGTTTGGCTAAAAGAA	NA	False	NA	NA	False	AAAACA	-13	NA	55248077	55233451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_55233508_55240939_55241095_55248009
transcript_34726.nic	chr13	+	3413	7	NIC	ENSMUSG00000021481.12	novel	3333	7	NA	NA	-16	0	intron_retention	FALSE	canonical	3	20	junction_4	17.8013732304249	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCCGATGTGTGCGCT	5178	False	NA	11	True	NA	NA	NA	55253107	55282638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270094_55270329_55278346_55278441_55280119
transcript_34727.nic	chr13	+	3654	7	NIC	ENSMUSG00000021481.12	novel	3333	7	NA	NA	-16	241	intron_retention	FALSE	canonical	3	20	junction_4	17.8013732304249	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTGTCTTTGTATTGTG	5178	False	NA	NA	False	AATAAA	-36	NA	55253107	55282879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270094_55270329_55278346_55278441_55280119
transcript_34728.known	chr13	+	3333	7	FSM	ENSMUSG00000021481.12	ENSMUST00000021937.12	3333	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	9.82202739877171	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCCGATGTGTGCGCT	19	False	NA	11	True	NA	NA	NA	55253139	55282638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270142_55270329_55278346_55278441_55280119
transcript_34730.known	chr13	+	765	6	FSM	ENSMUSG00000021481.12	ENSMUST00000161077.2	765	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	26.8223787162884	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCACAGTGCAAGACTAAA	91	False	NA	NA	False	NA	NA	NA	55253211	55280188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270094_55270329_55280119
transcript_34736.known	chr13	+	1112	6	FSM	ENSMUSG00000021481.12	ENSMUST00000162476.8	1112	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	25.663982543635	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGGCAGCTTTGTGTAGA	25	False	NA	NA	False	NA	NA	NA	55253145	55280568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55270142_55270329_55278346_55278441_55280119
transcript_34738.known	chr13	+	663	5	FSM	ENSMUSG00000021481.12	ENSMUST00000160660.8	663	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.2407010500749	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGGCATGAGGCCAACTT	29	False	NA	NA	False	NA	NA	NA	55253149	55280309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55278346_55278441_55280119
transcript_34742.known	chr13	+	3324	18	FSM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.40364144505634	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTGTGTGGCAGGGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	55300452	55316572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55300741_55303250_55303385_55304043_55304308_55304398_55304480_55304586_55304754_55306906_55307031_55307735_55307927_55308061_55308201_55308928_55309123_55309206_55309353_55309434_55309557_55313702_55313814_55313908_55314100_55314670_55314794_55314900_55314972_55315212_55315351_55315618_55315725_55315838
transcript_3475.known	chr1	+	3645	8	FSM	ENSMUSG00000026305.16	ENSMUST00000097649.10	3645	8	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	18.7823190848223	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTACTGGTTGTTCTG	NA	False	NA	4	True	AATAAA	-18	NA	90981175	91045037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91042317
transcript_34767.nic	chr13	+	3296	7	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	-29	-17147	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	52.6046575884683	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGTACAGGAACAAGTGC	NA	False	NA	NA	False	AATATA	-44	NA	55357565	55408256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156
transcript_34771.nic	chr13	+	3392	7	NIC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	-37	-17147	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	52.6046575884683	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGTACAGGAACAAGTGC	NA	False	NA	NA	False	AATATA	-44	NA	55359594	55408256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156
transcript_34772.nic	chr13	+	941	6	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	91.9469412215545	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTGTTGTCTTTTTTTT	NA	False	NA	NA	False	AATACA	-14	NA	55357565	55388659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_34780.known	chr13	+	1149	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224156.2	1149	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	114.053671576149	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTGTTGTCTTTTTTTT	NA	False	NA	NA	False	AATACA	-14	NA	55358547	55388659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55358879_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_34788.known	chr13	+	1001	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224918.2	1001	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	91.9469412215545	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359631	55388660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_34795.nic	chr13	+	601	5	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	-29	-2019	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	64.355943781441	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGGGAAACAGAAAGAAAAA	NA	False	NA	9	True	NA	NA	NA	55357565	55386640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502
transcript_348.known	chr1	-	9749	3	FSM	ENSMUSG00000045210.9	ENSMUST00000057438.7	9749	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_2	5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTCCATTGATTTTTCT	NA	False	NA	NA	False	ATTAAA	-22	NA	9818607	9788846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_9795576_9807190_9807278_9815674
transcript_34804.nnic	chr13	+	655	5	NNC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	126	-2019	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	98.0876521280839	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGGGAAACAGAAAGAAAAA	NA	False	NA	9	True	NA	NA	NA	55359479	55386640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_55359657_55361016_55361131_55361873_55361964_55381707_55381844_55386502
transcript_34807.nic	chr13	+	753	5	ISM	ENSMUSG00000021488.9	ENSMUST00000224918.2	1001	6	-93	2020	-93	-2019	5prime_fragment	FALSE	canonical	3	116	junction_1	64.355943781441	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGGGAAACAGAAAGAAAAA	NA	False	NA	9	True	NA	NA	NA	55359538	55386640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502
transcript_34809.nic	chr13	+	2716	5	ISM	ENSMUSG00000021488.9	ENSMUST00000224918.2	1001	6	-37	1	-37	0	intron_retention	FALSE	canonical	3	116	junction_1	64.355943781441	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTGTTGTCTTTTTTTT	NA	False	NA	NA	False	AATACA	-14	NA	55359594	55388659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502
transcript_3481.known	chr1	+	3851	16	FSM	ENSMUSG00000070732.3	ENSMUST00000094698.2	3851	16	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	27.1317771871533	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTCCAGTGCTTTCTGT	4264	False	NA	11	True	AATAAA	-17	NA	91072824	91098517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91072892_91077804_91077896_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
transcript_34822.nic	chr13	+	864	2	ISM	ENSMUSG00000021488.9	ENSMUST00000224973.2	9905	21	-29	101811	-29	634	5prime_fragment	FALSE	canonical	3	116	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGAAGTGGACGGAAGC	NA	False	NA	NA	False	AATAAA	-5	NA	55357565	55361757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55357689_55361016
transcript_34823.known	chr13	+	2013	2	FSM	ENSMUSG00000021488.9	ENSMUST00000224338.2	2013	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTCTGTCAATCTCTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	55359353	55362980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55359403_55361016
transcript_34824.nic	chr13	+	957	2	ISM	ENSMUSG00000021488.9	ENSMUST00000224918.2	1001	6	-34	26903	-34	634	5prime_fragment	FALSE	canonical	3	116	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGAAGTGGACGGAAGC	NA	False	NA	NA	False	AATAAA	-5	NA	55359597	55361757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55359814_55361016
transcript_34826.known	chr13	+	339	2	FSM	ENSMUSG00000021488.9	ENSMUST00000225169.2	339	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTCGGTAATGGTCAATC	NA	False	NA	NA	False	NA	NA	NA	55360198	55361123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55360431_55361016
transcript_34827.known	chr13	+	12784	23	FSM	ENSMUSG00000021488.9	ENSMUST00000099490.3	12784	23	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	35.1453887033198	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCCTTGCCCTGTGTTTT	NA	False	NA	15	True	AGTAAA	-18	NA	55357594	55466138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55357689_55361016_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
transcript_34830.known	chr13	-	1168	8	FSM	ENSMUSG00000034789.9	ENSMUST00000035242.9	1168	8	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_3	95.4118890465364	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTGTGCACTGGGTG	6442	False	NA	-22	True	AATAAA	-14	NA	55469758	55467697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55468028_55468124_55468188_55468315_55468367_55468557_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469350
transcript_34836.nic	chr13	-	1423	7	NIC	ENSMUSG00000034789.9	novel	1168	8	NA	NA	-63	0	intron_retention	FALSE	canonical	3	458	junction_6	60.0101843208486	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTGTGCACTGGGTG	6378	False	NA	-22	True	AATAAA	-14	NA	55469822	55467697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_55468028_55468124_55468188_55468315_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469350
transcript_34842.known	chr13	-	1327	6	FSM	ENSMUSG00000021485.15	ENSMUST00000021941.8	1327	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	5.62138772902208	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCGTACAGTCTATCACC	6155	False	NA	-7	True	NA	NA	NA	55477571	55472980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55473712_55473825_55474010_55476182_55476298_55476426_55476457_55477081_55477188_55477410
transcript_34845.known	chr13	+	2644	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	2049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	4034	False	NA	18	True	NA	NA	NA	55468312	55473085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
transcript_34850.known	chr13	+	1204	4	FSM	ENSMUSG00000021486.8	ENSMUST00000224220.2	1204	4	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	69.7726466620138	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTCTGGAGTCAGATAG	5553	False	NA	15	True	NA	NA	NA	55469831	55473082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472419_55472642
transcript_34852.known	chr13	-	730	4	FSM	ENSMUSG00000034789.9	ENSMUST00000223672.2	730	4	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_3	50.5327176743499	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTAGACTTCCATGATGT	6608	False	NA	NA	False	NA	NA	NA	55469592	55468594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55468658_55468739_55468808_55468914_55469272_55469350
transcript_34853.known	chr13	-	1742	4	FSM	ENSMUSG00000021485.15	ENSMUST00000146181.8	1742	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	6.23609564462324	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCCTGTCCATGGTTT	6180	False	NA	-3	True	ATTAAA	-12	NA	55477546	55473294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55473712_55473825_55474010_55476182_55477188_55477410
transcript_34856.known	chr13	-	1592	5	FSM	ENSMUSG00000034789.9	ENSMUST00000224936.2	1592	5	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_4	37.1618083521241	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGTAGCTTCTGAACTG	6456	False	NA	-63	True	NA	NA	NA	55469744	55467738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55468028_55468124_55468188_55468315_55468658_55468739_55468808_55468914
transcript_34859.known	chr13	-	4315	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	0	0	0	0	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGAGTTGTGTGCTCTGT	2839	False	NA	-3	True	NA	NA	NA	55510596	55491645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
transcript_34866.known	chr13	-	3331	2	FSM	ENSMUSG00000021484.9	ENSMUST00000225366.2	3331	2	0	0	0	0	multi-exon	FALSE	canonical	3	2539	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAATTTAAAAAAAA	3011	False	NA	NA	False	NA	NA	NA	55510424	55506945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55510053_55510200
transcript_34869.known	chr13	+	1846	10	FSM	ENSMUSG00000052087.15	ENSMUST00000135851.2	1846	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.39664500999739	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATGAGGTGTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	55526981	55532499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55527260_55527392_55527505_55527817_55527931_55528712_55528917_55530657_55530735_55530930_55531058_55531147_55531230_55531337_55531385_55531466_55531582_55531808
transcript_3487.nic	chr1	+	3312	15	NIC	ENSMUSG00000070732.3	novel	3851	16	NA	NA	-40	0	combination_of_known_junctions	TRUE	canonical	3	55	junction_1	30.8108945746435	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGACTCCAAGCTGTAT	4210	False	NA	32	True	TATAAA	-20	NA	91072770	91098015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_91072892_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
transcript_34877.known	chr13	+	2169	16	FSM	ENSMUSG00000074886.12	ENSMUST00000099482.5	2169	16	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_15	75.6883669323687	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGGATTGCTGTGGGA	116	False	NA	NA	False	NA	NA	NA	55593273	55607589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607145
transcript_34879.known	chr13	+	1997	16	FSM	ENSMUSG00000074886.12	ENSMUST00000224118.2	1997	16	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_15	96.0563723376365	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGAGCTCGGGGCTTTAT	116	False	NA	NA	False	NA	NA	NA	55593273	55607868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607596
transcript_34885.known	chr13	+	2769	16	FSM	ENSMUSG00000074886.12	ENSMUST00000225925.2	2769	16	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_8	142.105125406041	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCTGCCTCCTTTTATT	112	False	NA	26	True	AATACA	-28	NA	55593269	55608738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55600049_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607596
transcript_34909.known	chr13	+	2971	16	FSM	ENSMUSG00000074886.12	ENSMUST00000224995.2	2971	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_15	161.603135283117	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCCTTTTATTTC	1	True	NA	28	True	AATACA	-30	NA	55593158	55608740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599530_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607594
transcript_34910.nic	chr13	+	1362	2	ISM	ENSMUSG00000034686.9	ENSMUST00000046533.9	1359	3	7370	0	7370	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCGGAGGGGGATACCAG	9516	False	NA	NA	False	AATAAA	-22	NA	55619449	55620967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55620250_55620405
transcript_34911.known	chr13	-	2378	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109921.9	2378	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	11.9649389180894	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTAGCTTAGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	55635874	55621756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55622107_55622268_55622375_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
transcript_34924.known	chr13	-	1697	13	FSM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	33.4015967682185	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTGTGCCTCCCCGC	NA	False	NA	-7	True	AATAAA	-15	NA	55661259	55646228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_34926.known	chr13	-	3573	12	FSM	ENSMUSG00000021493.16	ENSMUST00000153230.8	3573	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	32.8834656636065	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCCTAGTCTTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	55661247	55645302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_34929.nic	chr13	-	1024	9	NIC	ENSMUSG00000021493.16	novel	899	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	59.3073298589643	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGCCTCTGTCTCCC	NA	False	NA	-3	True	AATAAA	-16	NA	55661253	55654586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_55654937_55655142_55655180_55655300_55655438_55655676_55655694_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_34931.known	chr13	-	899	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069929.13	899	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.7060179647109	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGCCTCTGTCTCCC	NA	False	NA	-3	True	AATAAA	-16	NA	55661247	55654586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55655676_55655694_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_34932.known	chr13	-	1006	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	False	NA	-2	True	AATAAA	-17	NA	55661251	55654585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_34934.known	chr13	-	2377	4	FSM	ENSMUSG00000035711.6	ENSMUST00000223944.2	2377	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTCTGCCTCTGGCCCACA	NA	False	NA	NA	False	AATAAA	-23	NA	55676367	55671043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55671925_55672031_55672205_55672293_55672394_55675144
transcript_34939.known	chr13	-	2199	17	FSM	ENSMUSG00000021494.10	ENSMUST00000224765.2	2199	17	0	0	0	0	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	1669	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTTCCTCTCTCACC	NA	False	NA	-5	True	ATTAAA	-21	NA	55684471	55678228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
transcript_3495.known	chr1	+	1154	11	FSM	ENSMUSG00000034343.15	ENSMUST00000059743.12	1154	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	126.177692164661	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTGGCAATAAGAAACCC	311	False	NA	NA	False	NA	NA	NA	91178032	91213462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91178160_91181481_91181550_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
transcript_3499.known	chr1	+	5654	10	FSM	ENSMUSG00000034343.15	ENSMUST00000171165.8	5654	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	86.300651614781	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGGTGTTTTAGTTAGGA	337	False	NA	NA	False	NA	NA	NA	91178058	91218059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91178160_91181984_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
transcript_35.known	ERCC-00096	+	1091	1	FSM	ERCC-00096A	DQ459429	1091	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20853	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00096_+_0_1100
transcript_35003.known	chr13	-	2950	9	FSM	ENSMUSG00000021495.11	ENSMUST00000225240.3	2950	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	57.7644732945779	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTATGATGGTGATTTG	NA	False	NA	-4	True	GATAAA	-19	NA	55718913	55687128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55718587
transcript_35005.nnic	chr13	-	1935	5	NIC	ENSMUSG00000021495.11	novel	4786	5	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_4	62.8589691293136	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTAGTATGATGGTGAT	NA	False	NA	-7	True	GATAAA	-16	NA	55718948	55687131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55718587
transcript_35006.known	chr13	-	3945	1	FSM	ENSMUSG00000021495.11	ENSMUST00000225262.2	3945	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAATAAGAAAGAATTG	NA	False	NA	NA	False	NA	NA	NA	55706721	55702776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55702800_55706700
transcript_35008.known	chr13	+	1420	5	FSM	ENSMUSG00000058569.9	ENSMUST00000109905.5	1420	5	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	31.3847096529504	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCGTGGTTACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	55740981	55745510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744653
transcript_35009.known	chr13	+	793	2	FSM	ENSMUSG00000058569.9	ENSMUST00000225888.2	793	2	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGAGGGCAGAGACAGTT	NA	False	NA	NA	False	NA	NA	NA	55740988	55741924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55741171_55741313
transcript_35011.known	chr13	+	2130	6	FSM	ENSMUSG00000021504.15	ENSMUST00000064701.8	2130	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	8.85437744847146	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTGGCAAGGAACTGG	NA	False	NA	5	True	AATAAA	-18	NA	55747877	55758255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031
transcript_35012.nic	chr13	+	2053	6	NIC	ENSMUSG00000021504.15	novel	2130	6	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	32.2391066873758	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTGGCAAGGAACTGG	NA	False	NA	5	True	AATAAA	-18	NA	55747854	55758255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55748006_55751932_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031
transcript_35013.known	chr13	+	2195	5	FSM	ENSMUSG00000021504.15	ENSMUST00000100764.10	2195	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	40.0686910192983	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACTGGCAAGGAACTGGA	NA	False	NA	6	True	AATAAA	-19	NA	55747708	55758256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55757031
transcript_35019.known	chr13	+	1382	4	FSM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	4.49691252107735	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGAAGTCTGTACATT	NA	False	NA	NA	False	AATAAA	-21	NA	55770817	55780224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55771070_55772523_55772985_55776389_55776456_55779621
transcript_35022.nic	chr13	+	3581	23	NIC	ENSMUSG00000021500.18	novel	5676	23	NA	NA	-52	-2144	intron_retention	FALSE	canonical	3	86	junction_19	66.2512279630466	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGCCACTGACCTGTCC	NA	False	NA	5	True	AATAAA	-14	NA	55782787	55826925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821928_55823708_55823928_55824582_55824728_55825333_55825408_55826596
transcript_35023.nic	chr13	+	3733	23	NIC	ENSMUSG00000021500.18	novel	5676	23	NA	NA	-52	-1992	intron_retention	FALSE	canonical	3	86	junction_19	66.2512279630466	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTCAGAGTTTTTATTT	NA	False	NA	15	True	NA	NA	NA	55782787	55827077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821928_55823708_55823928_55824582_55824728_55825333_55825408_55826596
transcript_3503.known	chr1	+	1110	10	FSM	ENSMUSG00000034343.15	ENSMUST00000191368.7	1110	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	94.7511360236793	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGATGCACACTCTCTTA	365	False	NA	NA	False	TATAAA	-6	NA	91178086	91213495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91178160_91181936_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
transcript_35030.nic	chr13	+	2491	17	ISM	ENSMUSG00000021500.18	ENSMUST00000172272.8	5676	23	-52	11406	-52	0	5prime_fragment	FALSE	canonical	3	262	junction_8	35.1476795108866	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTTAAACTTTCTTTG	NA	False	NA	10	True	NA	NA	NA	55782787	55817663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524
transcript_35034.nic	chr13	+	903	6	ISM	ENSMUSG00000021500.18	ENSMUST00000224551.2	4056	16	-53	19350	-52	-19350	5prime_fragment	FALSE	canonical	3	304	junction_4	27.1632104140877	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGTGAAGGAAGAGGTAAA	NA	False	NA	NA	False	NA	NA	NA	55782787	55798313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227
transcript_35035.nic	chr13	+	682	5	ISM	ENSMUSG00000021500.18	ENSMUST00000224551.2	4056	16	-53	22193	-52	-22193	5prime_fragment	FALSE	canonical	3	304	junction_4	29.0903764155777	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAGAAAACGGAAAGAAAGA	NA	False	NA	NA	False	AATAAA	-14	NA	55782787	55795470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439
transcript_35036.nic	chr13	+	761	5	ISM	ENSMUSG00000021500.18	ENSMUST00000224551.2	4056	16	-53	22114	-52	-22114	5prime_fragment	FALSE	canonical	3	304	junction_4	29.0903764155777	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAGATTGAGGAGATGA	NA	False	NA	NA	False	NA	NA	NA	55782787	55795549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439
transcript_35037.nic	chr13	+	636	4	ISM	ENSMUSG00000021500.18	ENSMUST00000224551.2	4056	16	-53	24398	-52	-24398	5prime_fragment	FALSE	canonical	3	316	junction_1	25.0909456887451	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGGATGCTGGGGTAGG	NA	False	NA	NA	False	AAAAAG	-28	NA	55782787	55793265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183
transcript_35039.known	chr13	+	5676	23	FSM	ENSMUSG00000021500.18	ENSMUST00000172272.8	5676	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_19	81.8265778520354	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTCTCAGATTATCTTT	NA	False	NA	8	True	AATAAA	-15	NA	55782839	55829069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823928_55824582_55824728_55825333_55825408_55826596
transcript_35041.nnic	chr13	+	2074	3	NNC	ENSMUSG00000045767.10	novel	4652	2	NA	NA	-55	-2459	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTTTACTGAACTTAAAA	NA	False	NA	NA	False	AAGAAA	-2	NA	55840881	55848854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_55841161_55846885_55848027_55848200
transcript_35042.nnic	chr13	+	4530	3	NNC	ENSMUSG00000045767.10	novel	4652	2	NA	NA	-55	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTCTGTACTACTTTAT	NA	False	NA	16	True	AATAAA	-16	NA	55840881	55851310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_55841161_55846885_55848027_55848200
transcript_35045.known	chr13	+	4652	2	FSM	ENSMUSG00000045767.10	ENSMUST00000057844.10	4652	2	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTACTACTTTATTTT	NA	False	NA	19	True	AATAAA	-19	NA	55840936	55851313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55841161_55846885
transcript_35049.known	chr13	+	1527	5	FSM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_2	13.4257215820976	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGGTTTCGCTTGT	NA	False	NA	18	True	AATAAA	-14	NA	55862462	55874040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873479
transcript_35052.known	chr13	+	546	4	FSM	ENSMUSG00000021496.13	ENSMUST00000124968.8	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	31.7210060089875	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTTATTTGTCATTA	NA	False	NA	15	True	AATACA	-18	NA	55875180	55924643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_55875288_55880748_55880881_55923179_55923261_55924417
transcript_35053.nnic	chr13	+	517	3	NNC	ENSMUSG00000021496.13	novel	544	4	NA	NA	-158	-36253	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	178.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACATTTGTAATTTGCT	NA	False	NA	27	True	ATTAAA	-33	NA	55875022	55888388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_55875288_55880748_55880881_55888268
transcript_35054.nnic	chr13	+	539	3	NIC	ENSMUSG00000021496.13	novel	546	4	NA	NA	-125	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	152	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTTATTTGTCATTA	NA	False	NA	15	True	AATACA	-18	NA	55875055	55924643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_55875288_55923179_55923261_55924417
transcript_35055.known	chr13	-	2451	3	FSM	ENSMUSG00000021506.8	ENSMUST00000021968.7	2451	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGAGCCCTAGCTGCTT	NA	False	NA	NA	False	ATTAAA	-25	NA	55979238	55972863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_55974425_55976252_55976489_55978584
transcript_3506.known	chr1	+	2202	12	FSM	ENSMUSG00000026307.13	ENSMUST00000027532.13	2202	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_11	10.6693350656825	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAAGTGGCCTGGGC	NA	False	NA	15	True	ATTAAA	-24	NA	91226059	91248797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91226171_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372_91236538_91237518_91237626_91243210_91243248_91244785_91244870_91245313_91245414_91246759_91246836_91247798
transcript_35062.nic	chr13	-	2105	9	NIC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	847	junction_5	145.981109651215	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	5840	False	NA	-8	True	AGTAAA	-15	NA	56283509	56221434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
transcript_35065.known	chr13	-	2046	9	FSM	ENSMUSG00000015937.16	ENSMUST00000016081.13	2046	9	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_5	233.718279933342	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCCGTGTTTTGTGTTAC	5905	False	NA	-5	True	AGTAAA	-18	NA	56283444	56221431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
transcript_35067.nic	chr13	-	1561	9	NIC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	847	junction_5	145.981109651215	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAGAGAAAAAAAA	5840	False	NA	NA	False	NA	NA	NA	56283509	56221978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
transcript_35084.known	chr13	-	889	6	FSM	ENSMUSG00000015937.16	ENSMUST00000139511.8	889	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	455.76511494409	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAGACCTGGAAATGAG	6006	False	NA	-13	True	AATAAA	-15	NA	56283343	56243368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_56243455_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
transcript_35089.known	chr13	-	1933	9	FSM	ENSMUSG00000015937.16	ENSMUST00000045788.9	1933	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	524.81126071665	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	6006	False	NA	-8	True	AGTAAA	-15	NA	56283343	56221434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_56222206_56230932_56231108_56232008_56232099_56236064_56236156_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
transcript_35090.known	chr13	-	1827	4	FSM	ENSMUSG00000021508.12	ENSMUST00000021970.11	1827	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	5.8878405775519	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTACTCCTGGGCTGTT	NA	False	NA	2	True	AATAAA	-22	NA	56444364	56436455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_56437621_56440273_56440388_56443638_56443745_56443922
transcript_35098.known	chr13	+	3507	4	FSM	ENSMUSG00000035509.18	ENSMUST00000124981.2	3507	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	56670325	56677899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727
transcript_35099.known	chr13	+	798	3	FSM	ENSMUSG00000035509.18	ENSMUST00000121095.8	798	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTCTCACTGGGCTG	NA	False	NA	NA	False	AATAAA	-26	NA	56670284	56675280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_56670436_56671322_56671417_56674727
transcript_35100.known	chr13	+	2714	17	FSM	ENSMUSG00000035493.11	ENSMUST00000045173.10	2714	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	6.48917367620871	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTGCTAGCTGCGTG	9425	False	NA	NA	False	AATAAA	-16	NA	56757398	56787171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_56757594_56762052_56762152_56771372_56771438_56773012_56773174_56773462_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56778495_56779042_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56785833_56785859_56786529
transcript_35103.known	chr13	+	6584	7	FSM	ENSMUSG00000021540.17	ENSMUST00000069557.14	6584	7	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	16.5495887830752	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCTTTGTTTATTTTC	NA	False	NA	13	True	AATAAA	-17	NA	56850822	56890190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
transcript_35107.known	chr13	+	4570	7	FSM	ENSMUSG00000021540.17	ENSMUST00000109876.8	4570	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	28.5856413062378	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGCCATCAGTTTGATAA	NA	False	NA	NA	False	AATAAA	-1	NA	56850864	56887773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_56851390_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
transcript_35111.known	chr13	+	1398	5	FSM	ENSMUSG00000021540.17	ENSMUST00000138677.8	1398	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	17.4696164811939	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAACTAGTCTTCTCTTT	NA	False	NA	NA	False	AATAAA	-2	NA	56850851	56881027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662
transcript_35114.known	chr13	-	2678	1	FSM	ENSMUSG00000007836.7	ENSMUST00000007980.7	2678	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGATTGAGTGAGAGTATG	NA	False	NA	-5	True	AATAAA	-15	NA	58276370	58273692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58273700_58276400
transcript_35115.known	chr13	+	764	5	FSM	ENSMUSG00000050002.15	ENSMUST00000051490.15	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	87.5928079239386	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCGGGCTGTACTGTAAA	NA	False	NA	2	True	NA	NA	NA	58305462	58311760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58310651_58310696_58311246
transcript_35116.known	chr13	+	1462	4	FSM	ENSMUSG00000050002.15	ENSMUST00000109868.4	1462	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	23.6220236220354	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTGTCTTTATACTTTA	NA	False	NA	NA	False	NA	NA	NA	58305467	58312507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58311246
transcript_35117.known	chr13	+	1898	3	FSM	ENSMUSG00000050002.15	ENSMUST00000226010.2	1898	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAACTTAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	58305462	58309744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_58305551_58307690_58307722_58307965
transcript_35122.known	chr13	-	3686	11	FSM	ENSMUSG00000005312.16	ENSMUST00000058735.12	3686	11	0	0	0	0	multi-exon	FALSE	canonical	3	817	junction_3	227.671803260746	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTCGCCTCTTTTGTA	1727	False	NA	-2	True	AATAAA	-20	NA	58363467	58323969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58328635_58328720_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
transcript_35126.known	chr13	-	3561	10	FSM	ENSMUSG00000005312.16	ENSMUST00000076454.8	3561	10	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_3	294.557588324433	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTGGTTGTCTCGCCTC	1761	False	NA	-9	True	AATAAA	-13	NA	58363433	58323976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
transcript_3513.known	chr1	+	2301	7	FSM	ENSMUSG00000026307.13	ENSMUST00000153621.8	2301	7	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	6.51707159867238	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	91226091	91239052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91226171_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372_91236538_91237518
transcript_35135.known	chr13	-	1523	12	FSM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	54.7743681383791	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGATCTTCACTGTC	NA	False	NA	2	True	AATAAA	-22	NA	58422002	58381159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421887
transcript_35138.nic	chr13	-	830	5	ISM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	-174	22464	-174	897	5prime_fragment	FALSE	canonical	3	116	junction_4	18.4526420872459	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAACCACCAGGGCAAG	NA	False	NA	25	True	AATAAA	-11	NA	58422176	58403623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421887
transcript_35140.known	chr13	-	447	2	FSM	ENSMUSG00000021552.8	ENSMUST00000225034.2	447	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCCATGCGGTTCTGTGT	NA	False	NA	NA	False	AAAAAG	-31	NA	58422654	58411755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58412014_58422465
transcript_35142.known	chr13	-	3051	4	FSM	ENSMUSG00000021550.7	ENSMUST00000022032.7	3051	4	0	0	0	0	multi-exon	TRUE	canonical	3	402	junction_2	21.2289111041209	397	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGCTAGATTTTGATAC	NA	False	NA	NA	False	NA	NA	NA	58533039	58527630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58529824_58530221_58530418_58531963_58532224_58532637
transcript_3515.known	chr1	+	747	6	FSM	ENSMUSG00000026307.13	ENSMUST00000147523.8	747	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.477991192953	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTACACACGGGCTGCC	NA	False	NA	NA	False	NA	NA	NA	91226128	91236537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91226171_91228232_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372
transcript_35158.known	chr13	-	2676	16	FSM	ENSMUSG00000021546.19	ENSMUST00000043269.14	2676	16	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1087.93485507584	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4765	False	NA	-23	True	AATAAA	-15	NA	58550316	58539052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_35168.known	chr13	-	2754	16	FSM	ENSMUSG00000021546.19	ENSMUST00000224182.2	2754	16	0	0	0	0	multi-exon	FALSE	canonical	3	4568	junction_3	976.692573035253	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGTGCCCAATTTGA	4751	False	NA	-19	True	AATAAA	-19	NA	58550330	58539048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_35204.known	chr13	-	2653	15	FSM	ENSMUSG00000021546.19	ENSMUST00000176207.8	2653	15	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_9	1988.3049647006	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATGGAAAAAGTTCC	4618	False	NA	-121	True	NA	NA	NA	58550463	58539150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_35212.known	chr13	-	2626	15	FSM	ENSMUSG00000021546.19	ENSMUST00000177019.8	2626	15	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_9	1943.30427759168	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4803	False	NA	-23	True	AATAAA	-15	NA	58550278	58539052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_3523.known	chr1	-	1368	12	FSM	ENSMUSG00000026309.15	ENSMUST00000027534.13	1368	12	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_9	38.9197096809944	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	False	NA	-8	True	AATAAA	-18	NA	91326505	91303552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318853_91318920_91326372
transcript_35268.known	chr13	+	2447	4	FSM	ENSMUSG00000035367.10	ENSMUST00000225815.2	2447	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	162.181653983701	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGTGAAAGAATGTT	NA	False	NA	16	True	AATAAA	-29	NA	58550513	58557906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_58550604_58552384_58552470_58554815_58554905_58555723
transcript_35270.known	chr13	-	780	4	FSM	ENSMUSG00000021546.19	ENSMUST00000175939.2	780	4	0	0	0	0	multi-exon	FALSE	canonical	3	6496	junction_3	612.864494720398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGATTAATCTTGGCAATC	4765	False	NA	NA	False	NA	NA	NA	58550316	58546539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58547027_58547706_58547805_58548146_58548232_58550206
transcript_35273.known	chr13	+	3594	3	FSM	ENSMUSG00000035367.10	ENSMUST00000225828.2	3594	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	177.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCGTGGTCATGG	NA	False	NA	5	True	NA	NA	NA	58550061	58558958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_58550332_58554815_58554905_58555723
transcript_35274.known	chr13	+	3855	3	FSM	ENSMUSG00000035367.10	ENSMUST00000042450.10	3855	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	108.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCGTGGTCATGGTGTC	NA	False	NA	9	True	NA	NA	NA	58550076	58558962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_58550604_58554815_58554905_58555723
transcript_35275.known	chr13	-	2704	16	FSM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_15	1661.36162897252	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	5126	False	NA	-23	True	AATAAA	-15	NA	58549955	58539052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
transcript_35276.known	chr13	-	4567	18	FSM	ENSMUSG00000021553.15	ENSMUST00000022036.14	4567	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.22545097976469	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGATTATTTGTTGGTT	3618	False	NA	NA	False	NA	NA	NA	58758691	58701118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_58703631_58706022_58706135_58706366_58706466_58707022_58707105_58710828_58711027_58711830_58712000_58714038_58714170_58717090_58717217_58719258_58719340_58720370_58720452_58721257_58721336_58722054_58722169_58724538_58724684_58726218_58726409_58728328_58728421_58730427_58730514_58735995_58736086_58758510
transcript_3528.known	chr1	-	2342	11	FSM	ENSMUSG00000026309.15	ENSMUST00000187105.7	2342	11	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_8	35.8725521812987	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTTGAGTGACTGGTC	NA	False	NA	-9	True	AATAAA	-17	NA	91326477	91303553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91316187_91318328_91318386_91318853_91318920_91326372
transcript_35282.known	chr13	-	8174	26	FSM	ENSMUSG00000021557.16	ENSMUST00000022040.14	8174	26	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_25	6.92242731995071	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGCTTGTTTCTGTT	1055	False	NA	NA	False	NA	NA	NA	59705125	59593555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59630330_59630419_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
transcript_35292.known	chr13	-	2879	18	FSM	ENSMUSG00000021557.16	ENSMUST00000109830.9	2879	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	6.94416685335233	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTATTTGACTTTATGCA	1080	False	NA	NA	False	ATTAAA	-19	NA	59705100	59641213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_59641685_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
transcript_35309.known	chr13	+	3793	23	FSM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_6	70.4314478267713	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTAGGAGCAGAAAAGGTG	1210	False	NA	NA	False	AATACA	-20	NA	59733108	59783736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
transcript_35323.nic	chr13	+	2599	22	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	-14	46	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	170.857036683091	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCCCTGTGGAGAACTAG	1196	False	NA	67	True	AATAAA	-29	NA	59733094	59782612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
transcript_35351.nic	chr13	+	1888	18	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	-14	7909	-14	58	5prime_fragment	FALSE	canonical	3	649	junction_6	72.4765562859651	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTGTAGACCGCCTGAG	1196	False	NA	NA	False	AAAAAG	-4	NA	59733094	59775827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691
transcript_3536.known	chr1	+	2815	8	FSM	ENSMUSG00000047443.15	ENSMUST00000086861.12	2815	8	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	6.01698276818648	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCATTCTCTGTCTGTA	NA	False	NA	8	True	ATTAAA	-20	NA	91294151	91301939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91294371_91296086_91296204_91297092_91297196_91297807_91298065_91298136_91298246_91298346_91298438_91299103_91299183_91300099
transcript_35371.nic	chr13	+	1139	12	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	-14	23208	-14	3266	5prime_fragment	FALSE	canonical	3	649	junction_6	79.7557220932239	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATTAAAAGAGAAGAAATG	1196	False	NA	NA	False	NA	NA	NA	59733094	59760528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450
transcript_35377.known	chr13	-	3689	11	FSM	ENSMUSG00000021556.13	ENSMUST00000095739.10	3689	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_10	200.252240936275	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-22	NA	59823594	59782809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59822774_59822911_59823540
transcript_35384.known	chr13	-	3954	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	0	0	0	0	multi-exon	TRUE	canonical	3	421	junction_9	46.3947102135844	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCATCCTCTCTAGGT	NA	False	NA	NA	False	AATAAA	-16	NA	59823625	59782439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
transcript_354.known	chr1	+	3779	18	FSM	ENSMUSG00000025915.15	ENSMUST00000168907.8	3779	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	41.4287231319772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGGACTATTTCATGCT	NA	False	NA	NA	False	ATTAAA	-16	NA	9868367	9971070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_9868472_9897237_9897345_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
transcript_3540.known	chr1	-	640	3	FSM	ENSMUSG00000026309.15	ENSMUST00000189651.2	640	3	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	23	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTGAGGACAGCTACA	NA	False	NA	NA	False	NA	NA	NA	91326516	91317955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_91318386_91318853_91318920_91326372
transcript_3541.known	chr1	-	2683	12	FSM	ENSMUSG00000026309.15	ENSMUST00000187049.7	2683	12	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_8	208.010091935722	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTTGGAAGGTAAGATAT	NA	False	NA	-13	True	AATAAA	-26	NA	91326422	91301582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_91303261_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316076_91316169_91318328_91318386_91318853_91318920_91326372
transcript_35416.known	chr13	-	523	2	FSM	ENSMUSG00000021556.13	ENSMUST00000224160.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAATGAAAGAAATGTTG	NA	False	NA	NA	False	AATGAA	-16	NA	59823594	59822441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_59822911_59823540
transcript_35418.known	chr13	+	4287	4	FSM	ENSMUSG00000091311.4	ENSMUST00000165133.3	4287	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTTCTTGTGCACTTTGT	NA	False	NA	NA	False	AGTAAA	-14	NA	59860097	59867109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_59860315_59861449_59861490_59861948_59862010_59863140
transcript_3542.known	chr1	-	1335	4	FSM	ENSMUSG00000067071.9	ENSMUST00000086851.2	1335	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	18.4932420089069	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	False	NA	-1	True	AATAAA	-35	NA	91340944	91339204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_91340205_91340442_91340525_91340614_91340702_91340778
transcript_3543.known	chr1	-	1573	3	FSM	ENSMUSG00000067071.9	ENSMUST00000126136.8	1573	3	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	9	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	False	NA	-1	True	AATAAA	-35	NA	91340944	91339204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_91340525_91340614_91340702_91340778
transcript_35449.known	chr13	-	1942	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTCCTTTTCTTGTTGG	NA	False	NA	3	True	ATTAAA	-23	NA	59917624	59903222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
transcript_35450.known	chr13	+	4862	2	FSM	ENSMUSG00000089875.3	ENSMUST00000162450.3	4862	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGGGACTGGAGCTCCT	NA	False	NA	NA	False	NA	NA	NA	59917779	59923221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_59918161_59918740
transcript_35452.known	chr13	-	2499	2	FSM	ENSMUSG00000035248.10	ENSMUST00000225576.2	2499	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTTACATGCCTGCAA	NA	False	NA	NA	False	NA	NA	NA	59970947	59967926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_59969925_59970446
transcript_35455.known	chr13	-	619	2	FSM	ENSMUSG00000035248.10	ENSMUST00000225179.2	619	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAAGGCTGTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	59970928	59969444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_59969925_59970789
transcript_35456.known	chr13	-	4060	1	FSM	ENSMUSG00000044792.8	ENSMUST00000224636.2	4060	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAGAAAAAAAACACCA	NA	False	NA	NA	False	NA	NA	NA	59917567	59913507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_59913500_59917600
transcript_35457.known	chr13	-	2961	1	FSM	ENSMUSG00000052957.9	ENSMUST00000065086.6	2961	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGGTGCAGTTGCTTTC	NA	False	NA	NA	False	ATTAAA	-33	NA	60325179	60322218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_60322200_60325200
transcript_35459.known	chr13	+	5009	27	FSM	ENSMUSG00000021559.15	ENSMUST00000226059.2	5009	27	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_26	11.2282004438423	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGACCCCCCCCCCCCCAT	9821	False	NA	NA	False	NA	NA	NA	60749760	60910616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_60749925_60750238_60750411_60844044_60844267_60864491_60864631_60865827_60865958_60866115_60866165_60866250_60866278_60867423_60867577_60867924_60867971_60869587_60869678_60870833_60870927_60873110_60873231_60873629_60873729_60874375_60874475_60876241_60876341_60877190_60877389_60878638_60878837_60884057_60884157_60887868_60887947_60895914_60896138_60897006_60897196_60898944_60899143_60900027_60900167_60901922_60902044_60905162_60905352_60908448_60909678_60910170
transcript_3546.known	chr1	+	3474	15	FSM	ENSMUSG00000034292.14	ENSMUST00000047242.9	3474	15	0	0	0	0	multi-exon	FALSE	canonical	2	37	junction_5	6.41943795619752	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATGGACTGTCAAATTT	8984	False	NA	8	True	ATTAAA	-24	NA	91422415	91457029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494_91428633_91428726_91429147_91433144_91433217_91435214_91435291_91446015_91446037_91447299_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600_91453825_91455339
transcript_35461.known	chr13	+	5304	27	FSM	ENSMUSG00000021559.15	ENSMUST00000044083.9	5304	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	16.4338372243722	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTAGTCCTTGATTTGA	NA	False	NA	NA	False	AATAAA	-21	NA	60750024	60911005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_60750074_60750238_60750411_60844044_60844267_60864491_60864631_60865827_60865958_60866115_60866165_60866250_60866278_60867423_60867577_60867924_60867971_60869587_60869678_60870833_60870927_60873110_60873231_60873629_60873729_60874375_60874475_60876241_60876341_60877190_60877389_60878638_60878837_60884057_60884157_60887868_60887947_60895914_60896138_60897006_60897196_60898944_60899143_60900027_60900167_60901922_60902044_60905162_60905352_60908448_60909699_60910170
transcript_35463.known	chr13	+	5491	26	FSM	ENSMUSG00000021559.15	ENSMUST00000077453.13	5491	26	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_19	8.36334861165072	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGACCCCCCCCCCCCCA	9831	False	NA	NA	False	NA	NA	NA	60749770	60910615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_60749925_60750238_60750411_60844044_60844267_60864491_60864631_60865827_60865958_60866115_60866165_60866250_60866278_60867423_60867577_60867924_60867971_60869587_60869678_60870833_60870927_60873110_60873231_60873629_60873729_60874375_60874475_60876241_60876341_60877190_60877389_60878638_60878837_60884057_60884157_60887868_60887947_60895914_60896138_60897006_60897196_60898944_60899143_60900027_60900167_60901922_60902044_60905162_60905352_60908448
transcript_35472.nnic	chr13	+	666	3	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	24	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCTCCTGAGAGAATAAG	NA	False	NA	NA	False	NA	NA	NA	61952103	61974328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_61952356_61963139_61963348_61974122
transcript_35476.nnic	chr13	+	1207	5	NNC	ENSMUSG00000113566.2	novel	886	4	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_2	230.419590095981	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTATGTGTGAAAGCCTG	NA	False	NA	-66	True	NA	NA	NA	62245556	62259791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_62245653_62250218_62250513_62254561_62254689_62254881_62254943_62259162
transcript_35478.known	chr13	+	886	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTATGTGTGAAAGCCTG	NA	False	NA	-66	True	NA	NA	NA	62245583	62259791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
transcript_35481.known	chr13	+	133	1	FSM	ENSMUSG00000119163.1	ENSMUST00000083063.4	133	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCTGAAAAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	62284743	62284876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_62284700_62284900
transcript_35482.known	chr13	+	452	3	FSM	ENSMUSG00000113081.2	ENSMUST00000221637.2	452	3	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_2	20.5	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATTGCAGGTATCTGAA	NA	False	NA	13	True	NA	NA	NA	62411379	62421101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_62411510_62420579_62420707_62420906
transcript_35483.known	chr13	-	2310	4	FSM	ENSMUSG00000094942.8	ENSMUST00000187656.7	2310	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	23.1708629293104	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62530991	62516141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_62518166_62519376_62519438_62519623_62519751_62530893
transcript_35484.known	chr13	-	2492	4	FSM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	11.5566238822398	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAAGAGGTG	9512	False	NA	NA	False	NA	NA	NA	62614646	62600829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_62603008_62604500_62604562_62604746_62604874_62614520
transcript_35485.known	chr13	-	1653	4	FSM	ENSMUSG00000074865.12	ENSMUST00000222429.2	1653	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	51.4220013439989	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGCATATTTGTGTGT	NA	False	NA	-8	True	ATTAAA	-40	NA	62706421	62634459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_62635805_62640180_62640241_62640621_62640749_62706300
transcript_35488.known	chr13	-	1457	4	FSM	ENSMUSG00000072066.8	ENSMUST00000223338.2	1457	4	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_3	3.74165738677394	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTCAAATGTAAGGAATG	NA	False	NA	NA	False	NA	NA	NA	62771994	62752068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_62753195_62754939_62755001_62755186_62755314_62771851
transcript_35506.known	chr13	-	615	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221999.2	615	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	44.0176732183285	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTACAACCTAAAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	62832732	62821422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_62821755_62823062_62823124_62823332_62823469_62832646
transcript_35507.known	chr13	-	3279	4	FSM	ENSMUSG00000091183.6	ENSMUST00000201047.4	3279	4	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_3	2.05480466765633	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGACTGGTATCTATCCT	NA	False	NA	NA	False	NA	NA	NA	62933622	62920013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_62922977_62924530_62924592_62924776_62924904_62933494
transcript_35508.known	chr13	-	1354	7	FSM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	7.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTTATGGGTCTTCTG	NA	False	NA	2	True	AATAAA	-20	NA	63006236	62984690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_62985095_62988084_62988205_62989599_62989738_62997190_62997332_63001787_63001881_63002717_63002881_63005941
transcript_35511.nic	chr13	-	765	5	ISM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	-22	4996	-22	-4996	5prime_fragment	FALSE	canonical	3	128	junction_1	5.1234753829798	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAAATTTTTAGCCTCAA	NA	False	NA	NA	False	AAAAAG	-21	NA	63006258	62989686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_62989738_62997190_62997332_63001787_63001881_63002717_63002881_63005941
transcript_3552.nic	chr1	+	887	5	ISM	ENSMUSG00000034292.14	ENSMUST00000189341.7	2257	16	12	26664	12	-26664	5prime_fragment	FALSE	canonical	3	49	junction_3	4.55521678957215	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGGGTGAAGGACCGAGA	8949	False	NA	NA	False	AAGAAA	-3	NA	91422380	91429014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494_91428633_91428726
transcript_35521.known	chr13	+	1055	6	FSM	ENSMUSG00000021458.18	ENSMUST00000222929.2	1055	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	29.9933325924279	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCAGTTTGCTTCTGAA	NA	False	NA	3	True	AATAAA	-17	NA	63387842	63450096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_3553.nic	chr1	+	601	4	ISM	ENSMUSG00000034292.14	ENSMUST00000189341.7	2257	16	7	27049	7	-27049	5prime_fragment	FALSE	canonical	3	49	junction_3	4.32049379893857	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGAGCTGTAGGATGCA	8944	False	NA	NA	False	AATACA	-5	NA	91422375	91428629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494
transcript_35531.known	chr13	+	918	5	FSM	ENSMUSG00000021458.18	ENSMUST00000223007.2	918	5	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_1	45.3231453012696	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATGTGTTCAGTCAACA	NA	False	NA	-83	True	NA	NA	NA	63421071	63450010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_63421223_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_35533.nic	chr13	+	1401	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220885.2	894	6	301	-239	-14	0	3prime_fragment	FALSE	canonical	3	17	junction_1	48.7769156466458	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCAGTTTGCTTCTGAA	NA	False	NA	3	True	AATAAA	-17	NA	63420615	63450096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_35536.known	chr13	+	1754	4	FSM	ENSMUSG00000021458.18	ENSMUST00000223204.2	1754	4	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_1	47.8632310744781	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTTCTGTGTAATGTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	63420629	63447482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_63421223_63429955_63430073_63444671_63444759_63446525
transcript_35537.known	chr13	+	1481	4	FSM	ENSMUSG00000021458.18	ENSMUST00000221364.2	1481	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	51.6333225737023	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTAATGTTTATTT	NA	False	NA	NA	False	ATTAAA	-35	NA	63420847	63447486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525
transcript_3554.known	chr1	+	5826	5	FSM	ENSMUSG00000026311.17	ENSMUST00000027538.9	5826	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	8.86002257333467	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGGCTCTCTAGCTC	8955	False	NA	7	True	AATAAA	-19	NA	91468435	91487311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91468587_91471872_91472020_91474649_91474953_91479775_91480162_91482472
transcript_35542.nnic	chr13	-	2760	17	NNC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	47.9683733698569	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	-1	True	AGTAAA	-18	NA	63579564	63459948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63547889_63547950_63548047_63548133_63550655_63550853_63553910_63554070_63579263
transcript_35544.known	chr13	-	2995	16	FSM	ENSMUSG00000021461.18	ENSMUST00000163091.8	2995	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	40.6849139389802	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTCAGACCTTCCTACT	NA	False	NA	-7	True	AATAAA	-17	NA	63579539	63459568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_63460618_63464997_63465097_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63579263
transcript_35553.nnic	chr13	-	2608	16	NNC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	40.828856897488	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	-1	True	AGTAAA	-18	NA	63579571	63459948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63547889_63547950_63548047_63548133_63550655_63550853_63579263
transcript_35554.nnic	chr13	-	2700	16	NNC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_15	36.5910735927038	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	-1	True	AGTAAA	-18	NA	63579564	63459948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63553910_63554070_63579263
transcript_35561.known	chr13	-	3111	15	FSM	ENSMUSG00000021461.18	ENSMUST00000161977.8	3111	15	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_14	18.8014599954148	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAAGTTGCTGAGTTGC	NA	False	NA	NA	False	NA	NA	NA	63579538	63459352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63579263
transcript_35565.nnic	chr13	-	2590	15	NIC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_14	30.5478046240141	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	-1	True	AGTAAA	-18	NA	63579574	63459948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550892_63579263
transcript_35567.known	chr13	-	2288	14	FSM	ENSMUSG00000021461.18	ENSMUST00000099444.10	2288	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_13	30.2197082916227	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	-1	True	AGTAAA	-18	NA	63579508	63459948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63579263
transcript_3557.known	chr1	+	735	4	FSM	ENSMUSG00000026311.17	ENSMUST00000190484.7	735	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	11.2644968324772	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCCTCGCTGCCGCTGCC	8973	False	NA	NA	False	NA	NA	NA	91468453	91482546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_91468587_91471877_91472020_91479775_91480162_91482472
transcript_35582.nic	chr13	-	2157	12	NIC	ENSMUSG00000021461.18	novel	2288	14	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_11	34.1096917954438	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	-1	True	AGTAAA	-18	NA	63579557	63459948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63579263
transcript_35597.known	chr13	+	4614	19	FSM	ENSMUSG00000021470.20	ENSMUST00000238465.2	4614	19	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_14	17.5231768921923	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGACGTGCCATTAAC	NA	False	NA	NA	False	NA	NA	NA	63963288	64047317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_63963332_63967444_63967870_63972622_63972743_63982409_63982604_63989237_63989400_63989775_63989984_63992359_63992501_63995154_63995269_63996554_63996675_64000764_64000837_64001441_64001588_64006044_64006141_64013771_64013872_64016839_64016993_64018502_64018584_64019609_64020742_64025192_64025348_64042451_64042634_64046347
transcript_356.known	chr1	+	3706	17	FSM	ENSMUSG00000025915.15	ENSMUST00000166384.8	3706	17	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	31.0518090254014	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTGGACTATTTCATG	NA	False	NA	NA	False	ATTAAA	-14	NA	9868331	9971068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_9868472_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
transcript_35602.nic	chr13	+	3214	16	ISM	ENSMUSG00000021470.20	ENSMUST00000238465.2	4614	19	-213	26882	22	124	5prime_fragment	FALSE	canonical	3	68	junction_14	18.4805002337298	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAACTTGATAATTCTCCT	NA	False	NA	NA	False	AAAAAG	-11	NA	63963075	64020435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_63963332_63967444_63967870_63972622_63972743_63982409_63982604_63989237_63989400_63989775_63989984_63992359_63992501_63995154_63995269_63996554_63996675_64000764_64000837_64001441_64001588_64006044_64006141_64013771_64013872_64016839_64016993_64018502_64018584_64019609
transcript_35604.nic	chr13	+	1995	11	ISM	ENSMUSG00000021470.20	ENSMUST00000067821.13	2743	14	-41	15845	22	0	5prime_fragment	TRUE	canonical	3	89	junction_9	12.0979337078693	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTTGTTTTCTAAACTA	NA	False	NA	8	True	AATAAA	-24	NA	63963075	64001624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_63963332_63967444_63967870_63972622_63972743_63982409_63982604_63989237_63989400_63989775_63989984_63992359_63992501_63995154_63995269_63996554_63996675_64000764_64000837_64001441
transcript_35608.known	chr13	+	5879	19	FSM	ENSMUSG00000021470.20	ENSMUST00000095724.11	5879	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	27.8532308563262	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTTCATCGAATTTAAT	NA	False	NA	9	True	AATAAA	-20	NA	63963115	64048116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_63963625_63967444_63967870_63972622_63972743_63982409_63982604_63989237_63989400_63989775_63989984_63992359_63992501_63995154_63995269_63996554_63996675_64000764_64000837_64001441_64001588_64006044_64006141_64013771_64013872_64016839_64016993_64018502_64018584_64019609_64020742_64025192_64025348_64042451_64042634_64046347
transcript_35610.known	chr13	-	1542	13	FSM	ENSMUSG00000033114.12	ENSMUST00000223461.2	1542	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	41.1348561306453	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGTGTGATATTACAGT	NA	False	NA	NA	False	AATAAA	-19	NA	64277150	64244954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64274564_64274656_64276999
transcript_35611.known	chr13	-	2303	12	FSM	ENSMUSG00000033114.12	ENSMUST00000099441.6	2303	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_8	14.1169846708972	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTATGGTTTTTGGTT	NA	False	NA	-1	True	NA	NA	NA	64277169	64244121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
transcript_35619.known	chr13	-	917	11	FSM	ENSMUSG00000033114.12	ENSMUST00000220792.2	917	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.1846236578898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGCCTAGGCTGGAAAGA	NA	False	NA	NA	False	AAGAAA	-42	NA	64277125	64245380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64245499_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
transcript_3562.known	chr1	-	8100	27	FSM	ENSMUSG00000026313.17	ENSMUST00000097644.9	8100	27	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_26	29.6698799314714	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCTACCTCCTTGTGT	6554	False	NA	0	True	AATAAA	-23	NA	92108063	91856500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896074_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909975_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977_92076217_92107979
transcript_35620.known	chr13	-	3532	5	FSM	ENSMUSG00000044934.14	ENSMUST00000059817.12	3532	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	7.32717544487642	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATGGGTCATTCTTACA	6050	False	NA	NA	False	AATAAA	-26	NA	64301016	64280831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64283351_64290021_64290161_64291968_64292089_64293343_64293495_64300413
transcript_35624.known	chr13	+	2564	8	FSM	ENSMUSG00000021476.10	ENSMUST00000021929.10	2564	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	9.99183340002612	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCCTTATTCATTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	64309682	64334351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_64310149_64317827_64317991_64321876_64322036_64322603_64322673_64323818_64323903_64329920_64330093_64332386_64332573_64333086
transcript_35626.known	chr13	+	4903	7	FSM	ENSMUSG00000021476.10	ENSMUST00000221904.2	4903	7	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	8.22090830342568	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCCTTATTCATTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	64309637	64334351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_64310149_64317827_64317991_64321876_64322036_64322603_64322673_64323818_64323903_64329920_64332573_64333086
transcript_35627.known	chr13	+	471	2	FSM	ENSMUSG00000021476.10	ENSMUST00000221264.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGACATTGGTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	64310059	64311432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_64310149_64311050
transcript_35630.nic	chr13	-	3330	15	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	-387	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	22.1833730712064	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAGAGCCCATAATTAGAA	NA	False	NA	NA	False	NA	NA	NA	64396843	64343150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_64344490_64344793_64344860_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
transcript_35637.known	chr13	-	2886	14	FSM	ENSMUSG00000033102.16	ENSMUST00000109769.10	2886	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	22.3145877936915	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64396456	64343171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64344490_64353084_64353232_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
transcript_35647.known	chr13	-	3011	6	FSM	ENSMUSG00000021482.11	ENSMUST00000222570.2	3011	6	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_1	21.3672646822189	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGTTTGTTCTGGGTTC	NA	False	NA	0	True	ATTAAA	-17	NA	64460524	64437610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64440043_64445068_64445201_64456635_64456742_64456906_64456961_64460080_64460150_64460306
transcript_35655.known	chr13	-	791	5	FSM	ENSMUSG00000021482.11	ENSMUST00000021938.11	791	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	76.095334942426	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGGGGGCGCTAGAA	NA	False	NA	NA	False	AATAAA	-21	NA	64460388	64439640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64440043_64445068_64445201_64456635_64456742_64460080_64460150_64460306
transcript_35656.known	chr13	-	2858	5	FSM	ENSMUSG00000021482.11	ENSMUST00000220895.2	2858	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	71.2635951941803	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAAATTTTTTGTTTGGGT	NA	False	NA	-21	True	AATAAA	-27	NA	64460524	64437631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64440043_64456635_64456742_64456906_64456961_64460080_64460150_64460306
transcript_35660.known	chr13	-	1971	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	0	0	0	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	1413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCAAGTCTCATATCTG	NA	False	NA	NA	False	NA	NA	NA	64518120	64511027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
transcript_35663.known	chr13	-	6168	9	FSM	ENSMUSG00000021477.10	ENSMUST00000222517.2	6168	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	448.115620543404	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTGTGTGTGTACAT	NA	False	NA	NA	False	AATAAA	-19	NA	64518704	64507150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049_64518335_64518598
transcript_35666.known	chr13	+	4118	8	FSM	ENSMUSG00000021483.9	ENSMUST00000021939.8	4118	8	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_1	3.65892813567591	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTATGCTGCCATT	NA	False	NA	NA	False	AATAAA	-17	NA	64580127	64589587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_64580485_64580790_64580905_64583931_64584121_64584306_64584429_64584579_64584643_64585202_64585327_64585690_64585847_64586594
transcript_35671.known	chr13	-	3251	13	FSM	ENSMUSG00000038212.17	ENSMUST00000054730.10	3251	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	144.098827969634	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGGCTTAAAAACAATTT	NA	False	NA	-15	True	AATAAA	-17	NA	65260788	65212959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_65214676_65215676_65215820_65217457_65217556_65219818_65219932_65221369_65221442_65222799_65222914_65223297_65223517_65226167_65226283_65229213_65229342_65234902_65234966_65243432_65243529_65260317_65260473_65260569
transcript_35677.known	chr13	-	3832	12	FSM	ENSMUSG00000038212.17	ENSMUST00000155487.8	3832	12	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_6	41.7491525128019	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTCTGAAGACTTCTAC	NA	False	NA	NA	False	TATAAA	-15	NA	65260789	65212476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_65214676_65215676_65215820_65217457_65217556_65219818_65219932_65221369_65221442_65222799_65222914_65223297_65223517_65226167_65226283_65229213_65229342_65234902_65234966_65243432_65243529_65260317
transcript_35683.known	chr13	-	3551	11	FSM	ENSMUSG00000032999.11	ENSMUST00000221659.2	3551	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	15.0253119767944	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTACTGACTTCTAAT	NA	False	NA	-13	True	ATTAAA	-18	NA	65353782	65324930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433_65353531_65353752
transcript_35687.known	chr13	-	3527	10	FSM	ENSMUSG00000032999.11	ENSMUST00000037372.8	3527	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_9	7.43531778858738	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGACTTCTAATCTCAAA	NA	False	NA	-7	True	ATTAAA	-24	NA	65353530	65324924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433
transcript_35689.known	chr13	+	2909	8	FSM	ENSMUSG00000021514.19	ENSMUST00000126879.8	2909	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	11.5564276663752	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATACCCTCCCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	65426627	65445609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65443876
transcript_35696.known	chr13	+	1815	1	FSM	ENSMUSG00000021514.19	ENSMUST00000222364.2	1815	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTGCTGTGATAGCT	NA	False	NA	25	True	AATAAA	-18	NA	65450219	65452034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_65450200_65452000
transcript_35698.nnic	chr13	-	583	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-7055	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	204	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65651662	65639602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_65639775_65644415_65644605_65651440
transcript_35706.nnic	chr13	+	1086	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	10	-40891	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTCG	NA	False	NA	NA	False	NA	NA	NA	66392093	66412336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_66392214_66410256_66410298_66410645_66410719_66411484
transcript_35707.nnic	chr13	+	575	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47286	127	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	25.1705295048705	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATGCCTTGGTTCCA	NA	False	NA	NA	False	NA	NA	NA	66439369	66599465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_66439588_66448255_66448445_66453083_66453131_66599344
transcript_35708.nnic	chr13	+	510	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47350	126	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	25.1705295048705	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTAGCATGCCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	66439433	66599464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_66439588_66448255_66448445_66453083_66453168_66599381
transcript_35709.nnic	chr13	+	471	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47388	125	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	25.1705295048705	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTAGCATGCCTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	66439471	66599463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_66439588_66448255_66448445_66453083_66453190_66599403
transcript_35710.known	chr13	+	463	3	FSM	ENSMUSG00000114616.2	ENSMUST00000224041.2	463	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	12	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGCATGTGAACCTTGA	NA	False	NA	NA	False	NA	NA	NA	66392083	66453227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_66392214_66448255_66448445_66453083
transcript_35712.nnic	chr13	+	551	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47286	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	22.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGCATGTGAACCTTGA	NA	False	NA	NA	False	NA	NA	NA	66439369	66453227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_66439588_66448255_66448445_66453083
transcript_35713.nnic	chr13	+	598	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47286	-4287	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCTTTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	66439369	66448940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_66439588_66448255_66448449_66448753
transcript_35718.known	chr13	-	1519	4	FSM	ENSMUSG00000097483.3	ENSMUST00000180403.3	1519	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	5.09901951359278	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCATCAAGAACTGTTT	NA	False	NA	NA	False	NA	NA	NA	66667951	66651229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_66652035_66652807_66652875_66653161_66653268_66667410
transcript_35720.known	chr13	-	1094	3	FSM	ENSMUSG00000097483.3	ENSMUST00000181516.2	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	24	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66667587	66651223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_66652035_66653161_66653268_66667410
transcript_35725.nnic	chr13	-	2343	6	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9947	353	intron_retention	FALSE	canonical	3	25	junction_5	11.6961532137708	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGTCTGAGATTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	66846363	66830549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66841838_66841917_66846221
transcript_35726.nnic	chr13	-	2517	6	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9947	353	intron_retention	FALSE	non_canonical	0	0	junction_2	20.3823453017556	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGTCTGAGATTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	66846363	66830549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_66832305_66833395_66833621_66834625_66834801_66836256_66836399_66841838_66841917_66846221
transcript_3574.known	chr1	-	3191	1	FSM	ENSMUSG00000026313.17	ENSMUST00000185267.2	3191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAGAAAAAAAAAATCAA	NA	False	NA	NA	False	NA	NA	NA	91934582	91931391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_91931400_91934600
transcript_35740.known	chr13	-	464	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATACTGGAGAGAAACCTT	NA	False	NA	NA	False	NA	NA	NA	66950624	66941415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
transcript_35745.known	chr13	+	3424	13	FSM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_7	19.2476549798209	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGCTTTCTCTCTCTCT	7858	False	NA	NA	False	TATAAA	-12	NA	67080893	67146465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_67081751_67093340_67093433_67101583_67101629_67104445_67104571_67111376_67111536_67114453_67114606_67120557_67120700_67122508_67122622_67124809_67124876_67135817_67135918_67142016_67142086_67143410_67143481_67145031
transcript_35752.known	chr13	-	1415	8	FSM	ENSMUSG00000021519.12	ENSMUST00000173158.8	1415	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	120.714539306581	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	398	False	NA	NA	False	AATAAA	-10	NA	67081131	67060189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076352_67077948_67078288_67080998
transcript_35754.known	chr13	-	1479	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	377	False	NA	NA	False	AATAAA	-18	NA	67081152	67060181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
transcript_35761.known	chr13	-	2353	4	FSM	ENSMUSG00000021519.12	ENSMUST00000174011.8	2353	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	10.2306728354819	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGGTCATTACTGTT	427	False	NA	NA	False	AATAAA	-15	NA	67081102	67069252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67071010_67076233_67076387_67077948_67078288_67080998
transcript_35764.known	chr13	-	535	4	FSM	ENSMUSG00000021520.5	ENSMUST00000021993.5	535	4	0	0	0	0	multi-exon	FALSE	canonical	3	4784	junction_3	381.861231339344	1972	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGATTATTTGAATTCAA	7712	False	NA	-25	True	AATAAA	-18	NA	67053442	67048680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67048891_67049465_67049633_67050793_67050866_67053356
transcript_35767.known	chr13	-	2416	4	FSM	ENSMUSG00000058883.17	ENSMUST00000109742.11	2416	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	6.68331255192114	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	False	NA	1	True	AATAAA	-20	NA	67229576	67217462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67229513
transcript_35768.known	chr13	-	346	3	FSM	ENSMUSG00000100235.9	ENSMUST00000225558.2	346	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGAGTGGAAGGTCAGAT	NA	False	NA	NA	False	NA	NA	NA	67256658	67250083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67250200_67250761_67250846_67256512
transcript_35770.known	chr13	+	397	4	FSM	ENSMUSG00000058900.6	ENSMUST00000225334.2	397	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	8.28653526310404	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAGAAGAAATCATATAG	NA	False	NA	NA	False	NA	NA	NA	67321262	67329876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_67321373_67324511_67324639_67325128_67325225_67329812
transcript_35772.known	chr13	+	2712	4	FSM	ENSMUSG00000051037.16	ENSMUST00000120861.8	2712	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.63299316185545	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGTTTATTATTATTAT	NA	False	NA	14	True	AATAAA	-19	NA	67342569	67357362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_67342659_67346596_67346724_67347212_67347309_67354962
transcript_35774.known	chr13	-	4126	4	FSM	ENSMUSG00000078995.11	ENSMUST00000057070.9	4126	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	8.33999733546453	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGGAAATGGGGCCTTA	2228	False	NA	NA	False	NA	NA	NA	67523929	67511702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67515485_67520295_67520392_67520869_67520997_67523808
transcript_35778.known	chr13	-	4677	4	FSM	ENSMUSG00000098905.3	ENSMUST00000081582.8	4677	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6.64997911442	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGAGGCTGGAGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	67508724	67487369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67491722_67493413_67493510_67495906_67496034_67508622
transcript_35779.known	chr13	-	3334	4	FSM	ENSMUSG00000055560.9	ENSMUST00000056470.10	3334	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	6.23609564462324	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTAATTTGTGTAAAAAAC	NA	False	NA	-4	True	NA	NA	NA	67569537	67553827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67556862_67561226_67561323_67561952_67562080_67569460
transcript_3578.known	chr1	-	2020	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	0	0	0	0	multi-exon	FALSE	canonical	3	1166	junction_5	87.5025220095095	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCCTGGTAGCACTGGGC	NA	False	NA	1	True	NA	NA	NA	92401582	92366731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
transcript_35785.known	chr13	-	3238	4	FSM	ENSMUSG00000069206.15	ENSMUST00000075255.6	3238	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	29.1699998095456	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATTGGTGTCTGCTTGGT	9938	False	NA	4	True	NA	NA	NA	67599743	67588551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67591454_67596939_67597036_67597468_67597596_67599630
transcript_35787.known	chr13	-	2391	4	FSM	ENSMUSG00000071291.11	ENSMUST00000076123.12	2391	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	4.08248290463863	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTCTTTGGTCATGCCA	NA	False	NA	-1	True	NA	NA	NA	67648674	67638286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648489
transcript_35788.known	chr13	-	2300	4	FSM	ENSMUSG00000071291.11	ENSMUST00000171518.8	2300	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	12.657891697365	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTTGGTCATGCCAT	NA	False	NA	0	True	NA	NA	NA	67648622	67638285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648529
transcript_35790.known	chr13	-	2656	4	FSM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	7.71722460186015	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGGTCATAGTGTTTA	9222	False	NA	NA	False	NA	NA	NA	67674296	67663899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67666232_67668744_67668841_67669311_67669439_67674195
transcript_35791.known	chr13	-	382	2	FSM	ENSMUSG00000097333.8	ENSMUST00000181573.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGGCTATTTGGTTTGTT	9222	False	NA	NA	False	AATAAA	-20	NA	67674296	67669157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67669439_67674195
transcript_35792.known	chr13	-	5293	4	FSM	ENSMUSG00000095432.10	ENSMUST00000181892.9	5293	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	6.68331255192114	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGAGAACTGTAGTTTT	NA	False	NA	NA	False	NA	NA	NA	67701949	67686759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67691030_67693442_67693539_67694743_67694871_67701149
transcript_35793.known	chr13	-	700	3	FSM	ENSMUSG00000095432.10	ENSMUST00000053289.11	700	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	5.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTACATGCATGGCAAT	NA	False	NA	NA	False	AATAAA	-12	NA	67701257	67693073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67693539_67694743_67694871_67701149
transcript_35795.known	chr13	-	855	4	FSM	ENSMUSG00000058093.14	ENSMUST00000138725.3	855	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	22.5437845585479	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGAGAAACCATACAAGT	NA	False	NA	NA	False	NA	NA	NA	67757806	67741547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757661
transcript_35797.known	chr13	-	1103	4	FSM	ENSMUSG00000071281.13	ENSMUST00000130891.3	1103	4	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_1	3.85861230093008	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCATTCATACAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	67872445	67856307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67872306
transcript_35801.known	chr13	-	3957	4	FSM	ENSMUSG00000071281.13	ENSMUST00000073157.15	3957	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	15.2970585407784	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGTTATTTTATTTAT	NA	False	NA	-1	True	NA	NA	NA	67877292	67853427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67877179
transcript_35802.known	chr13	-	749	4	FSM	ENSMUSG00000071281.13	ENSMUST00000223829.2	749	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.1334630345285	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAAGGCCTTCCGCAATTC	NA	False	NA	NA	False	NA	NA	NA	67872413	67856599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67872336
transcript_35803.known	chr13	-	2312	4	FSM	ENSMUSG00000058331.16	ENSMUST00000144183.3	2312	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	2.44948974278318	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCAGTATTGTGATTAAT	NA	False	NA	NA	False	AATAAA	-21	NA	67903347	67895918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_67897842_67899728_67899825_67900506_67900634_67903181
transcript_35805.known	chr13	+	3258	4	FSM	ENSMUSG00000090659.10	ENSMUST00000164936.10	3258	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	3.39934634239519	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGATTTTGGTCAGTG	NA	False	NA	5	True	NA	NA	NA	67927823	67937197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_67927939_67931908_67932036_67932512_67932609_67934277
transcript_35811.nnic	chr13	+	3098	4	Fusion	ENSMUSG00000090659.10_ENSMUSG00000097906.2	novel	3258	4	NA	NA	-4	1726	multi-exon	FALSE	canonical	2	7	junction_3	12.7540843131393	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTATGTGTTTGTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	67927807	67961045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr13_+_67927939_67931908_67932036_67932512_67932609_67958301
transcript_35812.known	chr13	+	2399	4	FSM	ENSMUSG00000030446.18	ENSMUST00000181391.8	2399	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	7.58653778449403	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGATTAGTATTGCATT	NA	False	NA	NA	False	AATAAA	-17	NA	67961858	67975121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_67962016_67970359_67970487_67971218_67971315_67973102
transcript_35819.known	chr13	-	3861	15	FSM	ENSMUSG00000034617.8	ENSMUST00000223398.2	3861	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	100.496522429426	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAGAACT	NA	False	NA	-90	True	NA	NA	NA	68730223	68709481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68729414
transcript_35821.nic	chr13	-	3447	15	NIC	ENSMUSG00000034617.8	novel	3861	15	NA	NA	3	79	combination_of_known_junctions	FALSE	canonical	3	42	junction_14	91.4475705706024	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCCTGTGCTATTGTGTG	NA	False	NA	-11	True	AATAAA	-11	NA	68730237	68709402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68729921
transcript_35824.known	chr13	-	3692	15	FSM	ENSMUSG00000034617.8	ENSMUST00000045827.5	3692	15	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_10	41.7021141733919	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGGTGAGGCTTTGTG	NA	False	NA	NA	False	ATTAAA	-25	NA	68730240	68708898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
transcript_35832.nic	chr13	-	3368	15	NIC	ENSMUSG00000034617.8	novel	3861	15	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_14	91.4475705706024	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAGAACT	NA	False	NA	-90	True	NA	NA	NA	68730237	68709481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68729921
transcript_35853.known	chr13	-	2728	14	FSM	ENSMUSG00000034617.8	ENSMUST00000223101.2	2728	14	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_10	83.6727918422384	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAGAACT	NA	False	NA	-90	True	NA	NA	NA	68730232	68709481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68727661_68727816_68728669_68728835_68730183
transcript_3586.known	chr1	-	1514	10	FSM	ENSMUSG00000026260.13	ENSMUST00000189503.7	1514	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	396.495325583892	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTTATCTCTGAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	92401479	92367000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398672_92398708_92401384
transcript_35896.known	chr13	-	636	3	FSM	ENSMUSG00000034617.8	ENSMUST00000220973.2	636	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	201	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTAACTGACTGTTTCCC	NA	False	NA	NA	False	NA	NA	NA	68730059	68727664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_68727816_68728669_68728835_68729739
transcript_35897.known	chr13	-	532	3	FSM	ENSMUSG00000034617.8	ENSMUST00000221259.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	182.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCGGAAGTTTGTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	68730213	68727740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_68727816_68728669_68728835_68729921
transcript_35900.known	chr13	+	2501	7	FSM	ENSMUSG00000021532.12	ENSMUST00000223319.2	2501	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	60.5658502971949	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGTGTGTACTCTTGTT	NA	False	NA	NA	False	AATAAA	-12	NA	68730381	68740455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
transcript_35901.known	chr13	+	2421	7	FSM	ENSMUSG00000021532.12	ENSMUST00000051784.10	2421	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	41.7053154086303	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730366	68740457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_35905.nic	chr13	+	2323	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	45.0175891550551	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730318	68740397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_68730384_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_35908.nic	chr13	+	2754	7	NIC	ENSMUSG00000021532.12	novel	2501	7	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_4	59.418478233253	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730318	68740397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
transcript_35909.nic	chr13	+	2657	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730318	68740397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_35910.nic	chr13	+	2715	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGTGTGTACTCTTGTT	NA	False	NA	NA	False	AATAAA	-12	NA	68730318	68740455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_35920.known	chr13	+	2834	19	FSM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_7	132.889457914055	1120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGGCATGAGACTTGGA	NA	False	NA	31	True	AATAAA	-19	NA	69760134	69782453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_69760308_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
transcript_35921.known	chr13	-	2644	5	FSM	ENSMUSG00000021594.12	ENSMUST00000091514.6	2644	5	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_3	7.15454401062709	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATTGTTTGTCTTCAT	NA	False	NA	NA	False	AATAAA	-19	NA	69759561	69721567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_69723316_69734703_69734855_69743034_69743137_69748349_69748517_69759085
transcript_35925.known	chr13	+	913	4	FSM	ENSMUSG00000021598.10	ENSMUST00000022089.10	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_3	16.1314048434171	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATGTAATTCTTAAAAT	NA	False	NA	27	True	AATAAA	-23	NA	69957959	69964223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_69958172_69959725_69959810_69961822_69961926_69963709
transcript_35926.known	chr13	+	815	3	FSM	ENSMUSG00000021598.10	ENSMUST00000221893.2	815	3	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_1	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTCACTGAGGTCACTG	39	False	NA	NA	False	NA	NA	NA	69958032	69962414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_69958172_69959725_69959810_69961822
transcript_35928.known	chr13	+	4197	2	FSM	ENSMUSG00000021598.10	ENSMUST00000221045.2	4197	2	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTCATGTAATTCTTA	16	False	NA	23	True	AATAAA	-19	NA	69958009	69964219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_69959810_69961822
transcript_35929.known	chr13	-	7667	19	FSM	ENSMUSG00000034525.8	ENSMUST00000043493.7	7667	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	40.7369232218174	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTGTTGTGATTGTTTT	NA	False	NA	-9	True	AATAAA	-19	NA	70785753	70736815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_70737932_70740691_70740791_70742943_70743051_70744273_70744465_70747168_70747330_70749186_70749356_70750297_70754996_70756894_70757296_70758652_70758740_70763051_70763109_70763192_70763233_70763452_70763536_70765215_70765254_70767103_70767181_70768776_70768889_70769556_70769576_70772041_70772077_70772526_70772586_70785635
transcript_35932.nic	chr13	-	727	8	ISM	ENSMUSG00000034525.8	ENSMUST00000043493.7	7667	19	-215	26666	-215	-8607	5prime_fragment	FALSE	canonical	0	0	junction_5	39.0044476794059	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTGAAAAGGAGTTTAAG	NA	False	NA	NA	False	AAGAAA	-2	NA	70785968	70763481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_70763536_70765215_70765254_70767103_70767181_70768776_70768889_70769556_70769576_70772041_70772077_70772526_70772586_70785635
transcript_35937.known	chr13	+	2625	5	FSM	ENSMUSG00000001504.11	ENSMUST00000074372.6	2625	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	5.35607132140714	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTTCATCTTCTTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	72776938	72782317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_72777433_72778689_72779096_72779375_72780090_72780704_72780781_72781382
transcript_35940.known	chr13	+	300	1	FSM	ENSMUSG00000066407.4	ENSMUST00000085163.4	300	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	732	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTTTCTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	73465962	73466262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73466000_73466300
transcript_35942.known	chr13	-	534	4	FSM	ENSMUSG00000021606.9	ENSMUST00000147407.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_3	967.204333231723	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATAGTGAGTTGTTTCT	NA	False	NA	-8	True	AATAAA	-14	NA	73476571	73467997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476396
transcript_35943.known	chr13	-	568	4	FSM	ENSMUSG00000021606.9	ENSMUST00000022097.6	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	2374	junction_2	33.95094500403	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGAGTTGTTTCTTCCTT	NA	False	NA	-3	True	AATAAA	-19	NA	73476661	73467992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476457
transcript_35946.known	chr13	+	717	3	FSM	ENSMUSG00000021607.10	ENSMUST00000221730.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	303	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACATTAAGCATTCTGTA	9283	False	NA	-3	True	NA	NA	NA	73476631	73479855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73476740_73478978_73479211_73479478
transcript_35949.known	chr13	-	757	3	FSM	ENSMUSG00000021606.9	ENSMUST00000223293.2	757	3	0	0	0	0	multi-exon	FALSE	canonical	3	2374	junction_1	41.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGAGCCGCTTCGCTGC	NA	False	NA	33	True	CATAAA	-10	NA	73476581	73467956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_73468536_73475534_73475589_73476457
transcript_35952.known	chr13	-	1306	3	FSM	ENSMUSG00000113346.3	ENSMUST00000223470.3	1306	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	10.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTCCTGAGTTCAAATCC	NA	False	NA	0	True	NA	NA	NA	73495503	73492783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_73493358_73494614_73495181_73495337
transcript_35961.known	chr13	+	3675	14	FSM	ENSMUSG00000021608.16	ENSMUST00000022099.15	3675	14	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_10	74.6226800557192	1821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTCGAGTGTGTTTTGT	NA	False	NA	23	True	AATAAA	-23	NA	73615315	73664541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73615637_73632379_73632523_73637005_73637221_73642920_73643034_73644298_73644360_73647417_73647477_73649474_73649510_73651159_73651215_73653620_73653704_73658114_73658241_73658966_73659121_73659418_73659518_73661938_73662081_73662472
transcript_35975.known	chr13	+	3532	13	FSM	ENSMUSG00000021608.16	ENSMUST00000123766.8	3532	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.128301257871	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTCGAGTGTGTTTTGT	NA	False	NA	23	True	AATAAA	-23	NA	73615315	73664541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73615637_73637005_73637221_73642920_73643034_73644298_73644360_73647417_73647477_73649474_73649510_73651159_73651215_73653620_73653704_73658114_73658241_73658966_73659121_73659418_73659518_73661938_73662081_73662472
transcript_35982.known	chr13	+	1973	12	FSM	ENSMUSG00000021608.16	ENSMUST00000147566.8	1973	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	177.430792001877	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	TATAAA	-38	NA	73615349	73663231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73615637_73642920_73643034_73644298_73644360_73647417_73647477_73649474_73649510_73651159_73651215_73653620_73653704_73658114_73658241_73658966_73659121_73659418_73659518_73661938_73662081_73662472
transcript_35983.known	chr13	+	3456	15	FSM	ENSMUSG00000021609.7	ENSMUST00000022100.7	3456	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	1.57790871674104	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGTCATCCATGCTGCC	NA	False	NA	NA	False	AATAAA	-18	NA	73684865	73726791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73684980_73686591_73686921_73688963_73689096_73692799_73693032_73705160_73705300_73706268_73706404_73709001_73709106_73710419_73710545_73714389_73714503_73715632_73715762_73716303_73716404_73717986_73718088_73719568_73719737_73720918_73720991_73725328
transcript_35989.known	chr13	+	2340	17	FSM	ENSMUSG00000021610.9	ENSMUST00000022102.9	2340	17	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_7	20.082544503872	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTCTTAACCTCTAAT	NA	False	NA	21	True	AATAAA	-16	NA	73752124	73768724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73752519_73753048_73753150_73754340_73754531_73755838_73755988_73757022_73757102_73759262_73759381_73759740_73759836_73760512_73760598_73761776_73761881_73762725_73762792_73763291_73763343_73764081_73764165_73764933_73764969_73765696_73765753_73765837_73765883_73766520_73766637_73768151
transcript_36.known	ERCC-00099	+	1344	1	FSM	ERCC-00099A	DQ875387	1344	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00099_+_0_1300
transcript_360.known	chr1	+	3680	17	FSM	ENSMUSG00000025915.15	ENSMUST00000171265.8	3680	17	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	18.6899036915657	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTGGACTATTTCATG	9814	False	NA	NA	False	ATTAAA	-14	NA	9918496	9971068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
transcript_36005.known	chr13	+	4313	16	FSM	ENSMUSG00000021611.10	ENSMUST00000022104.9	4313	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	5.35163526410386	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTCATACTAATTCG	2128	False	NA	NA	False	AATAAA	-16	NA	73775034	73797962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73775368_73775469_73776794_73782270_73782467_73783538_73783720_73784475_73784656_73785324_73785484_73787274_73787377_73788104_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299_73794427_73794895_73794958_73796065_73796191_73796406_73796536_73797028
transcript_36010.known	chr13	+	2663	2	FSM	ENSMUSG00000021611.10	ENSMUST00000223196.2	2663	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAACTGTTTCC	2123	False	NA	NA	False	GATAAA	-3	NA	73775029	73777794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73775368_73775469
transcript_36014.known	chr13	+	5142	24	FSM	ENSMUSG00000017756.10	ENSMUST00000017900.9	5142	24	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_9	57.8026758755535	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGTGCCTCATTTCCA	NA	False	NA	104	True	AGTAAA	-29	NA	73911815	73964873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73912010_73932637_73932733_73933162_73933286_73936683_73936831_73938059_73938115_73938768_73938900_73940668_73940911_73942042_73942255_73943216_73943385_73943722_73943822_73944885_73944944_73945645_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954318_73954424_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
transcript_36016.known	chr13	+	3242	23	FSM	ENSMUSG00000017756.10	ENSMUST00000222253.2	3242	23	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_22	160.503604398136	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAAAGGGCCCATGACTG	NA	False	NA	NA	False	ATTAAA	-12	NA	73911825	73960477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_73912010_73932637_73932733_73933162_73933286_73936683_73936831_73938059_73938115_73938768_73938900_73940668_73940911_73942042_73942255_73943216_73943385_73943722_73943822_73944885_73944944_73945645_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954318_73954424_73954557_73957103_73957212_73958024_73958204_73960321
transcript_3603.known	chr1	-	989	1	FSM	ENSMUSG00000026260.13	ENSMUST00000189582.2	989	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAATCTATT	NA	False	NA	NA	False	NA	NA	NA	92401489	92400500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_92400500_92401500
transcript_36039.known	chr13	-	4016	10	FSM	ENSMUSG00000021567.16	ENSMUST00000022051.14	4016	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.49897084035912	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCGCCAAGATGACCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	73995750	73966652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_73969657_73970808_73970937_73971390_73971476_73972367_73972513_73973184_73973281_73973802_73973931_73974995_73975057_73995031_73995136_73995388_73995425_73995521
transcript_36044.known	chr13	-	2801	9	FSM	ENSMUSG00000021567.16	ENSMUST00000118096.2	2801	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	2.14694550466471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGACTAGAGTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	73995731	73967812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_73969657_73970808_73970937_73971390_73971476_73972367_73972513_73973184_73973281_73973802_73973931_73974995_73975057_73995031_73995136_73995521
transcript_36047.known	chr13	-	3399	13	FSM	ENSMUSG00000021569.11	ENSMUST00000022053.11	3399	13	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_6	23.4319345243955	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74085903	74059465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068554_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608
transcript_3605.known	chr1	-	649	3	FSM	ENSMUSG00000073616.11	ENSMUST00000148508.2	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	285.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569645	92564866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_92565126_92567408_92567482_92569328
transcript_3606.known	chr1	-	438	3	FSM	ENSMUSG00000073616.11	ENSMUST00000097642.4	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_1	1	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569707	92564866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_92565126_92567408_92567482_92569601
transcript_36060.known	chr13	-	1469	7	FSM	ENSMUSG00000021569.11	ENSMUST00000222156.2	1469	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	185.430729803761	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTATTTTTATTCTAA	NA	False	NA	-20	True	ATTAAA	-14	NA	74069333	74060576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068568_74069291
transcript_36064.nic	chr13	+	2437	16	NIC	ENSMUSG00000057649.7	novel	2430	16	NA	NA	-21	0	combination_of_known_junctions	TRUE	canonical	3	32	junction_6	34.8873743478768	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGAGTACCTGTTTGTA	NA	False	NA	19	True	TATAAA	-26	NA	74085908	74108936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_36065.nic	chr13	+	2515	16	NIC	ENSMUSG00000057649.7	novel	2407	16	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_6	34.8873743478768	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCCCGTCCGCTTTGATG	NA	False	NA	29	True	AATAAA	-26	NA	74085908	74109014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_36066.known	chr13	+	2407	16	FSM	ENSMUSG00000057649.7	ENSMUST00000099384.4	2407	16	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_6	21.3306248280625	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCCCGTCCGCTTTGATG	NA	False	NA	29	True	AATAAA	-26	NA	74085956	74109014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_36079.known	chr13	+	3893	14	FSM	ENSMUSG00000057649.7	ENSMUST00000220488.2	3893	14	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	22.5797731132568	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGCTGAGTACCTGTT	NA	False	NA	15	True	TATAAA	-22	NA	74085975	74108932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_74086065_74086552_74086768_74086983_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_36080.known	chr13	+	4569	13	FSM	ENSMUSG00000057649.7	ENSMUST00000222191.2	4569	13	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_2	11.6141675934562	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGAGTACCTGTTTGTA	NA	False	NA	19	True	TATAAA	-26	NA	74085939	74108936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_74086065_74086552_74086768_74086983_74088910_74090062_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_36084.nic	chr13	+	322	2	ISM	ENSMUSG00000057649.7	ENSMUST00000222191.2	4569	13	-31	22218	-21	-552	5prime_fragment	FALSE	canonical	3	174	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAGAAGGAGAAGCACC	NA	False	NA	NA	False	NA	NA	NA	74085908	74086718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_74086065_74086552
transcript_36090.known	chr13	-	3641	12	FSM	ENSMUSG00000021572.10	ENSMUST00000036456.8	3641	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	28.6590098045136	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTGGCTGTTTTTAGATT	NA	False	NA	NA	False	NA	NA	NA	74210418	74184618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_36091.nnic	chr13	-	2356	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	30.6737026303942	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGGTTCACTCTTTTT	NA	False	NA	0	True	NA	NA	NA	74210443	74185751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_36093.nic	chr13	-	2293	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGGTTCACTCTTTTT	NA	False	NA	0	True	NA	NA	NA	74210443	74185751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_36094.nnic	chr13	-	2273	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	35.5973812761418	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGGTTCACTCTTTTT	NA	False	NA	0	True	NA	NA	NA	74210443	74185751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198438_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_36097.nnic	chr13	-	2284	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	30.6737026303942	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATGTTTTAAGAATTTG	NA	False	NA	-72	True	AATAAA	-21	NA	74210443	74185823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_36098.nic	chr13	-	2221	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATGTTTTAAGAATTTG	NA	False	NA	-72	True	AATAAA	-21	NA	74210443	74185823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_3610.nic	chr1	-	4258	14	NIC	ENSMUSG00000034212.15	novel	1809	3	NA	NA	13820	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	3.0537589601968	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTAAGCAGCCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	92816808	92787524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_92789125_92798530_92798692_92799394_92799471_92804256_92804423_92804732_92804847_92806052_92806185_92807036_92807145_92808701_92808843_92809472_92809614_92811463_92811636_92812556_92812988_92813857_92814017_92814344_92814562_92816168
transcript_36101.known	chr13	-	3231	11	FSM	ENSMUSG00000021572.10	ENSMUST00000222609.2	3231	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	42.0114270169439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTGGCTGTTTTTAGATT	NA	False	NA	NA	False	NA	NA	NA	74210360	74184618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74186448_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_36105.nic	chr13	-	3558	11	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-25	0	intron_retention	FALSE	canonical	3	100	junction_7	14.9946657181812	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGGTTCACTCTTTTT	NA	False	NA	0	True	NA	NA	NA	74210443	74185751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_3611.known	chr1	+	4176	9	FSM	ENSMUSG00000034220.8	ENSMUST00000045970.8	4176	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	9.32654142756038	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTGTGTGTGCTTTAA	7183	False	NA	NA	False	NA	NA	NA	92759366	92788501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_92759820_92781068_92781228_92782579_92782969_92783628_92783795_92784708_92784840_92784969_92785090_92785193_92785328_92785576_92785753_92786053
transcript_36113.nic	chr13	-	3228	13	NIC	ENSMUSG00000034152.7	novel	4922	13	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_12	65.7558615891643	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTAGGTGCTTGGTGTG	7191	False	NA	-11	True	ATTAAA	-11	NA	74356810	74320117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74355941
transcript_36114.known	chr13	-	4922	13	FSM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_12	37.5695651055774	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTAGGATTTTTCCT	7173	False	NA	NA	False	AATAAA	-16	NA	74356828	74317606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74356776
transcript_36118.nic	chr13	-	1885	10	ISM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	-23	10960	0	-8310	5prime_fragment	FALSE	canonical	3	174	junction_9	33.555923471125	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCATATAAAAAGGTAAGCA	7150	False	NA	NA	False	ATTAAA	-3	NA	74356851	74328566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74356776
transcript_36122.nic	chr13	-	809	5	NIC	ENSMUSG00000034152.7	novel	450	4	NA	NA	0	280	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	95.3817985781354	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACAGGCGGATACTTGAT	7150	False	NA	NA	False	AAGAAA	-4	NA	74356851	74341108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_74341409_74347574_74347795_74354161_74354185_74355025_74355217_74356776
transcript_36125.known	chr13	-	1376	6	FSM	ENSMUSG00000021576.7	ENSMUST00000222759.2	1376	6	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	263.104085867172	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTAGTTTTGGCTGGT	NA	False	NA	-7	True	AATAAA	-17	NA	74465699	74451635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74452168_74453659_74453770_74457808_74457962_74459786_74459832_74464448_74464511_74465225
transcript_36137.known	chr13	-	2900	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	0	0	0	0	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	1170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	-8	True	NA	NA	NA	74498399	74470372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
transcript_3615.known	chr1	+	1314	2	FSM	ENSMUSG00000047067.8	ENSMUST00000060913.8	1314	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGAGTTGCTCTTTATG	2855	False	NA	NA	False	AATAAA	-14	NA	92834702	92836157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_92835146_92835286
transcript_36167.known	chr13	+	762	3	FSM	ENSMUSG00000021578.18	ENSMUST00000162376.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	206.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTGGGAACTACTTGT	4406	False	NA	NA	False	NA	NA	NA	74498483	74505167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_74498528_74500980_74501106_74504574
transcript_36175.known	chr13	+	2682	4	FSM	ENSMUSG00000021578.18	ENSMUST00000160021.8	2682	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	196.493143787654	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACTGCATTGGCCTGGT	4358	False	NA	NA	False	NA	NA	NA	74498435	74510820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_74498528_74500974_74501106_74504574_74504937_74508723
transcript_36176.known	chr13	-	4153	5	FSM	ENSMUSG00000069184.5	ENSMUST00000223163.3	4153	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	7.88590514779375	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTAGCTTTTGGTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	74538955	74517444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74520947_74523086_74523183_74524554_74524682_74526730_74526986_74538782
transcript_36180.known	chr13	+	938	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33446	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAGATAA	7962	False	NA	NA	False	NA	NA	NA	74554527	74555465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_74554500_74555500
transcript_36182.known	chr13	-	1549	5	FSM	ENSMUSG00000069208.10	ENSMUST00000221173.2	1549	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	20.0546129356814	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74642111	74628175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968
transcript_36189.known	chr13	-	5141	32	FSM	ENSMUSG00000021585.11	ENSMUST00000223206.2	5141	32	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_27	33.4677691410694	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCTTGGCTATGTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	74956929	74840486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74956554
transcript_3619.known	chr1	+	3337	11	FSM	ENSMUSG00000026269.15	ENSMUST00000027487.15	3337	11	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	7.72334124585985	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACTTTAGTCTCTGTG	6657	False	NA	NA	False	AAAAAG	-18	NA	92838504	92848563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_92839206_92842780_92842922_92843535_92843688_92844076_92844194_92844432_92844669_92844868_92844983_92845355_92845469_92845739_92845849_92846594_92846826_92846905_92847049_92847283
transcript_36191.known	chr13	-	2910	31	FSM	ENSMUSG00000021585.11	ENSMUST00000065629.6	2910	31	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_30	32.8517883835873	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCCAAGGTAAACCTTGG	NA	False	NA	NA	False	AATAAA	-12	NA	74956058	74842406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74928621_74928694_74946774_74946838_74955937
transcript_36192.nic	chr13	-	3121	31	NIC	ENSMUSG00000021585.11	novel	5141	32	NA	NA	76	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_30	28.2737609022138	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCTGCCTGAACTCTAC	NA	False	NA	NA	False	AATAAA	-45	NA	74956853	74842373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74928621_74928694_74946774_74946838_74956554
transcript_36196.known	chr13	-	2857	30	FSM	ENSMUSG00000021585.11	ENSMUST00000223033.2	2857	30	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	32.8082020428457	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTACTTTCTTAGGAAT	NA	False	NA	NA	False	NA	NA	NA	74918768	74842361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852322_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74918664
transcript_36201.known	chr13	-	4765	29	FSM	ENSMUSG00000021585.11	ENSMUST00000222588.2	4765	29	0	0	0	0	multi-exon	TRUE	canonical	3	102	junction_28	16.6207701385947	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCTTGGCTATGTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	74918855	74840486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74918664
transcript_36213.known	chr13	+	5644	19	FSM	ENSMUSG00000021583.8	ENSMUST00000169114.3	5644	19	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_16	2.26077666104176	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGTCATGGTGC	NA	False	NA	NA	False	NA	NA	NA	74787686	74841320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_74788013_74794289_74794834_74805751_74805891_74808388_74808524_74810427_74810549_74811527_74811683_74812227_74812342_74814217_74814350_74814562_74814695_74814836_74814909_74816076_74816232_74817518_74817599_74819426_74819611_74820862_74821020_74821713_74821899_74822740_74822903_74823381_74823523_74823943_74824026_74838692
transcript_36214.known	chr13	+	5040	14	FSM	ENSMUSG00000021587.6	ENSMUST00000022075.6	5040	14	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_5	4.93268293596351	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTCATGAGAATAAGAAT	NA	False	NA	NA	False	AATAAA	-20	NA	75237944	75282980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_75238361_75241201_75241307_75244408_75244520_75246019_75246167_75247395_75247473_75254069_75254159_75258936_75259110_75260660_75260874_75263355_75263457_75273968_75274203_75274842_75275001_75275928_75276063_75278160_75278323_75280060
transcript_36215.known	chr13	+	276	1	FSM	ENSMUSG00000074800.5	ENSMUST00000099371.5	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAGCCCTGCTGTCTGAG	3163	False	NA	NA	False	NA	NA	NA	75793014	75793290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_75793000_75793300
transcript_36217.known	chr13	+	4382	12	FSM	ENSMUSG00000001542.8	ENSMUST00000001583.8	4382	12	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_2	37.9194448472108	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAATAATTTTGACGTGTA	5452	False	NA	NA	False	AATAAA	-29	NA	75854875	75920483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_75855917_75873071_75873120_75894410_75894533_75898043_75898208_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798
transcript_36225.nic	chr13	+	3471	11	NIC	ENSMUSG00000001542.8	novel	4382	12	NA	NA	-81	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	126.162434979672	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAATAATTTTGACGTGTA	6199	False	NA	NA	False	AATAAA	-29	NA	75855622	75920483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_75855917_75873071_75873120_75894410_75894533_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798
transcript_36232.known	chr13	+	511	3	FSM	ENSMUSG00000001542.8	ENSMUST00000221432.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_2	38	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAGTGTCTTATATA	6406	False	NA	NA	False	NA	NA	NA	75855829	75894786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_75855917_75873071_75873120_75894410
transcript_36233.known	chr13	+	1345	3	FSM	ENSMUSG00000021591.9	ENSMUST00000022082.8	1345	3	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_1	16	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTTGTCCGGTTCTGT	NA	False	NA	30	True	ATTAAA	-22	NA	75987986	75998270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_75988295_75995288_75995418_75997362
transcript_36235.known	chr13	-	4980	12	FSM	ENSMUSG00000021589.14	ENSMUST00000022078.12	4980	12	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	11.3494456849386	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAATGAAGTGTTCTGTA	6646	False	NA	NA	False	AATAAA	-20	NA	76091986	76017655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_76020581_76024289_76024387_76025491_76025659_76026915_76027090_76041024_76041146_76050296_76050410_76058748_76059115_76061461_76061574_76065811_76065967_76087570_76087758_76091325_76091552_76091649
transcript_36240.known	chr13	-	1676	5	FSM	ENSMUSG00000021589.14	ENSMUST00000109606.3	1676	5	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	10.5948100502085	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGGGTCGTTTTATGTT	6588	False	NA	NA	False	AATAAA	-24	NA	76092044	76060860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_76061574_76065811_76065967_76087570_76087758_76091325_76091552_76091649
transcript_36241.known	chr13	-	2807	4	FSM	ENSMUSG00000043190.15	ENSMUST00000050997.2	2807	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	20.2703943940144	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGTGTATGTGTATAA	NA	False	NA	0	True	AATAAA	-21	NA	76166681	76149653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76165639
transcript_36242.known	chr13	-	1436	4	FSM	ENSMUSG00000043190.15	ENSMUST00000179078.9	1436	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	36.2981481009094	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACATAAATAAAAATAAAAGC	NA	False	NA	NA	False	NA	NA	NA	76166789	76150638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166133
transcript_36243.known	chr13	-	595	4	FSM	ENSMUSG00000043190.15	ENSMUST00000167271.9	595	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	32.0555074137902	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166838	76150885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166776
transcript_36244.known	chr13	-	3657	8	FSM	ENSMUSG00000021592.19	ENSMUST00000239063.2	3657	8	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_3	7.18558647997674	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAATGTATAATTCTTTT	9776	False	NA	NA	False	NA	NA	NA	76246779	76208540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_76210722_76213398_76213624_76214753_76214979_76220218_76220391_76222893_76223171_76239776_76239937_76242006_76242137_76246492
transcript_36248.known	chr13	+	6976	45	FSM	ENSMUSG00000033991.10	ENSMUST00000224386.2	6976	45	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_18	35.3654766990177	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGGGTTACATTTGTGA	NA	False	NA	3	True	ATTAAA	-16	NA	76246852	76338435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76259791_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_36254.known	chr13	+	5381	44	FSM	ENSMUSG00000033991.10	ENSMUST00000091466.4	5381	44	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_18	33.3040145082969	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCTTTTAAATTTTTTT	NA	False	NA	NA	False	AAGAAA	-39	NA	76246852	76336102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76259791_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718
transcript_36259.nic	chr13	+	452	5	ISM	ENSMUSG00000033991.10	ENSMUST00000091466.4	5381	44	18	79700	18	-19313	5prime_fragment	FALSE	canonical	3	143	junction_1	14.0534693225552	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGGGTATTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	76246870	76256402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311
transcript_3626.known	chr1	+	2556	1	FSM	ENSMUSG00000026269.15	ENSMUST00000180306.2	2556	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAGAAAAGA	6727	False	NA	NA	False	NA	NA	NA	92838574	92841130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_92838600_92841100
transcript_36260.known	chr13	+	2116	5	FSM	ENSMUSG00000033991.10	ENSMUST00000223902.2	2116	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	121.425903332032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTCATGTACTATAGTT	NA	False	NA	NA	False	NA	NA	NA	76328543	76338225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_76328636_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_36263.nnic	chr13	+	767	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-22	675	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTCTTATTTTTTTAT	NA	False	NA	6	True	AATAAA	-7	NA	76328521	76336818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_36265.nnic	chr13	+	1993	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-22	-181	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTAATACTCAGTATTTC	NA	False	NA	3	True	ATTAAA	-15	NA	76328521	76338044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_36269.known	chr13	-	3747	21	FSM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_14	27.7961777947976	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATAGTCTTTAGTTG	NA	False	NA	-2	True	AATAAA	-22	NA	77283592	77191206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
transcript_36274.nic	chr13	-	1026	7	ISM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	-38	61446	-38	0	5prime_fragment	FALSE	canonical	3	79	junction_1	18.4842275106824	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAATTTCACAAATTAAA	NA	False	NA	NA	False	AATACA	-28	NA	77283630	77252652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
transcript_36277.nic	chr13	-	940	7	ISM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	-38	61532	-38	0	5prime_fragment	FALSE	canonical	3	79	junction_1	18.4842275106824	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAATTCAAAGAC	NA	False	NA	NA	False	AATAAA	-35	NA	77283630	77252738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
transcript_36278.known	chr13	-	1241	6	FSM	ENSMUSG00000021597.17	ENSMUST00000162320.2	1241	6	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	13.9283882771841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-45	NA	77283579	77253684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
transcript_36282.known	chr13	+	1539	4	FSM	ENSMUSG00000071252.7	ENSMUST00000225605.2	1539	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	17.5562587763516	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACAATGTTTTTTCATT	NA	False	NA	NA	False	AATAAA	-20	NA	77283672	77341833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672
transcript_36283.known	chr13	+	616	3	FSM	ENSMUSG00000071252.7	ENSMUST00000225992.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	11	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGTGACTTACACTGT	NA	False	NA	NA	False	AATAAA	-17	NA	77283669	77332123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_77283750_77322971_77323104_77331719
transcript_36284.known	chr13	+	1436	11	FSM	ENSMUSG00000064138.15	ENSMUST00000163257.9	1436	11	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_2	38.9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCAGCCGCCCGCCCGC	NA	False	NA	NA	False	NA	NA	NA	77856808	78311774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_77856973_77890881_77891006_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_78050772_78050995_78100103_78100224_78147704_78147822_78154506_78154592_78311631
transcript_36288.known	chr13	+	3892	10	FSM	ENSMUSG00000064138.15	ENSMUST00000091459.12	3892	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_7	8.92907582349531	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAACTGTGTCTTCTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	77856808	78314354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_78050772_78050995_78100103_78100224_78147704_78147822_78154506_78154592_78311631
transcript_36297.known	chr13	+	4132	8	FSM	ENSMUSG00000074794.11	ENSMUST00000159690.8	4132	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	68.2094613103263	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATAATTGTTTGGCAGTT	NA	False	NA	23	True	AATAAA	-23	NA	81031528	81044154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039568_81039762_81041488
transcript_36298.known	chr13	+	4101	8	FSM	ENSMUSG00000074794.11	ENSMUST00000099356.10	4101	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_5	15.8461995701281	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGGCAGTTTATTTGA	NA	False	NA	30	True	AATAAA	-30	NA	81031528	81044161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
transcript_36299.known	chr13	+	1908	8	FSM	ENSMUSG00000074794.11	ENSMUST00000161441.2	1908	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	68.1834260787527	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAATGCCGTCTATGTTT	NA	False	NA	NA	False	NA	NA	NA	81034213	81042439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_81034263_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
transcript_36304.nic	chr13	+	772	3	ISM	ENSMUSG00000074794.11	ENSMUST00000159690.8	4132	8	-79	6856	-53	-464	5prime_fragment	TRUE	canonical	3	186	junction_2	16.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGAAGGAATTTACAGT	NA	False	NA	NA	False	AGTAAA	-2	NA	81031449	81037298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_81032049_81035524_81035607_81037207
transcript_36305.known	chr13	-	2580	9	FSM	ENSMUSG00000069170.15	ENSMUST00000128585.9	2580	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	12.4172259381876	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAACCCCACACAA	2372	False	NA	NA	False	NA	NA	NA	81781258	81725554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_81726512_81726838_81727116_81727403_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
transcript_36307.known	chr13	-	1592	7	FSM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	8.51958527942137	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTAAAGTGTATATGA	2370	False	NA	NA	False	AATAAA	-18	NA	81781260	81727159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
transcript_36308.known	chr13	+	4250	3	FSM	ENSMUSG00000035840.8	ENSMUST00000224300.2	4250	3	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	12	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAGTTGTTGAATATAAT	289	False	NA	27	True	AATAAA	-29	NA	81805781	81820990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_81806056_81813123_81813389_81817279
transcript_3631.known	chr1	+	2902	12	FSM	ENSMUSG00000026270.12	ENSMUST00000027488.11	2902	12	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	15.6743724089108	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTAGTCTTGTTCCAAA	2260	False	NA	NA	False	AATAAA	-14	NA	92862097	92875663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
transcript_36311.known	chr13	+	2338	3	FSM	ENSMUSG00000035840.8	ENSMUST00000049055.8	2338	3	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_2	38	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCACATTACCTCATTTT	455	False	NA	NA	False	AATAAA	-17	NA	81805947	81819303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_81806056_81813123_81813389_81817338
transcript_36313.known	chr13	-	3054	8	FSM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	24.1119836409624	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGATTTGCAGTGAACA	NA	False	NA	-6	True	AATAAA	-18	NA	81859132	81821961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
transcript_36323.nic	chr13	-	871	5	ISM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	-325	13284	-325	6719	5prime_fragment	FALSE	canonical	3	275	junction_1	7.29297607290741	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACACTGGCTAATAGACT	NA	False	NA	NA	False	NA	NA	NA	81859457	81835245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
transcript_36324.nic	chr13	-	805	4	ISM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	-325	15370	-325	4633	5prime_fragment	FALSE	canonical	3	281	junction_3	5.35412613473634	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATGGGTACCAGGTAC	NA	False	NA	NA	False	TATAAA	-1	NA	81859457	81837331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_81837376_81842766_81842897_81847862_81848013_81858976
transcript_36325.known	chr13	-	424	4	FSM	ENSMUSG00000035834.12	ENSMUST00000161093.8	424	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	130.922368855237	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAAGACACAGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	81859075	81841964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_81842010_81842766_81842897_81847862_81848013_81858976
transcript_36326.known	chr13	-	733	3	FSM	ENSMUSG00000035834.12	ENSMUST00000161920.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	6.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATGCTGTGATTACTGC	NA	False	NA	NA	False	NA	NA	NA	81859064	81842401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_81842897_81847862_81848013_81858976
transcript_36327.known	chr13	+	3957	2	FSM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGCTTTTTATAGAACA	NA	False	NA	NA	False	ATTAAA	-25	NA	81859459	81901394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_81860102_81898079
transcript_36330.known	chr13	+	1226	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	0	0	0	0	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAATAGTCTGGAACATT	NA	False	NA	NA	False	AATAAA	-15	NA	81931195	81945274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
transcript_36338.known	chr13	+	2857	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	57.0470300398157	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAATACAATAAGAG	NA	False	NA	NA	False	NA	NA	NA	84370418	84444260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_36340.known	chr13	+	2632	12	FSM	ENSMUSG00000035762.12	ENSMUST00000223827.2	2632	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	68.3415099589633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370432	84443989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432305_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_36343.nic	chr13	+	2547	12	NIC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	69.776028941722	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370419	84443989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_36348.known	chr13	+	2414	11	FSM	ENSMUSG00000035762.12	ENSMUST00000225069.2	2414	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	81.3373223065525	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGAGTGTAATTTATT	NA	False	NA	17	True	ATTAAA	-18	NA	84370444	84443985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_84370554_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_36350.known	chr13	+	1428	3	FSM	ENSMUSG00000035762.12	ENSMUST00000225212.2	1428	3	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	6	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGATAAAAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	84370431	84407081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_84370554_84399348_84399453_84405879
transcript_36351.known	chr13	-	4563	25	FSM	ENSMUSG00000021549.15	ENSMUST00000109552.3	4563	25	0	0	0	0	multi-exon	TRUE	canonical	3	186	junction_11	23.7235232534199	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTAGATCCATAAAGCAT	NA	False	NA	NA	False	AATAAA	-29	NA	85437148	85362898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_85364307_85364995_85365131_85366300_85366379_85367524_85367614_85369589_85369658_85371576_85371664_85372321_85372438_85373600_85373744_85374652_85374813_85375070_85375244_85376349_85376427_85376726_85376885_85377723_85377802_85378506_85378595_85381707_85381865_85382478_85382600_85386257_85386337_85392306_85392458_85394709_85394763_85398550_85398583_85400544_85400663_85403502_85403574_85404457_85404594_85406436_85406590_85436514
transcript_36355.known	chr13	+	2045	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAGTGTTTTGTTTTGA	NA	False	NA	8	True	AATAAA	-19	NA	85337526	85361842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
transcript_36356.known	chr13	+	1055	9	FSM	ENSMUSG00000021548.11	ENSMUST00000163600.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	292.63455772516	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337595	85361029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350559_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
transcript_3636.known	chr1	+	2171	11	FSM	ENSMUSG00000026270.12	ENSMUST00000152983.8	2171	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	36.1199390918645	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATAATTTATGGATTAG	2717	False	NA	NA	False	AATAAA	-2	NA	92862554	92875651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92874495_92874696_92874936_92874983_92875230
transcript_36363.known	chr13	-	315	3	FSM	ENSMUSG00000017778.15	ENSMUST00000017922.9	315	3	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	5048	1457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGATGATCTGAAAATTG	NA	False	NA	-93	True	AAGAAA	-5	NA	86194893	86193013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_86193028_86193845_86193973_86194719
transcript_36367.known	chr13	-	540	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	0	0	0	0	multi-exon	FALSE	canonical	3	10515	junction_1	2196	2126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86195023	86192934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_86193028_86193845_86193989_86194719
transcript_36368.known	chr13	-	12427	15	FSM	ENSMUSG00000021614.17	ENSMUST00000109546.9	12427	15	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_8	18.7382616317414	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGACTTGTCTGTTTA	2606	False	NA	-1	True	AAGAAA	-23	NA	89890628	89803430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89836403_89841621_89851036_89853917_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
transcript_36371.known	chr13	-	1540	8	FSM	ENSMUSG00000021615.14	ENSMUST00000022115.14	1540	8	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	13.6993966796993	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	False	NA	-7	True	AATAAA	-14	NA	90237727	89997039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
transcript_36373.known	chr13	+	8689	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	0	0	0	0	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAAAGGCTGAAAAGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	90237241	90260376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
transcript_3638.known	chr1	+	1268	4	FSM	ENSMUSG00000026270.12	ENSMUST00000117814.8	1268	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	7.1336448530109	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCGGACCTGCTGTGGT	2650	False	NA	18	True	CATAAA	-18	NA	92862487	92868694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004
transcript_36380.known	chr13	+	1541	4	FSM	ENSMUSG00000012422.15	ENSMUST00000012566.9	1541	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	564.815013964749	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGTTCTCTCACTCCAG	NA	False	NA	-32	True	AATACA	-25	NA	90237880	90252780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90251406
transcript_36381.known	chr13	+	937	4	FSM	ENSMUSG00000049517.9	ENSMUST00000051955.9	937	4	0	0	0	0	multi-exon	FALSE	canonical	3	13520	junction_1	3048.72640075601	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTCTATAGGATAATT	NA	False	NA	27	True	AATAAA	-23	NA	91071076	91073069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_91071319_91071705_91071866_91072444_91072566_91072655
transcript_36383.known	chr13	+	658	4	FSM	ENSMUSG00000049517.9	ENSMUST00000224463.2	658	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9398.7280108652	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAATATTTTGTGTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	91071335	91072842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_91071526_91071705_91071866_91072444_91072566_91072655
transcript_36388.nnic	chr13	-	1220	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6046	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATGACACATCTTAAAT	4926	False	NA	NA	False	ATTAAA	-37	NA	91366032	91083987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
transcript_36389.known	chr13	-	1583	8	FSM	ENSMUSG00000021619.7	ENSMUST00000022119.6	1583	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	11.5121940673747	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTGACTACTGTTACTT	NA	False	NA	NA	False	ATTAAA	-15	NA	91372087	91083474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91372057
transcript_36393.known	chr13	+	3957	17	FSM	ENSMUSG00000003992.16	ENSMUST00000004094.15	3957	17	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_13	7.3396930283221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTTGATAATTTGATGGA	2721	False	NA	NA	False	NA	NA	NA	91609168	91851548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
transcript_36396.known	chr13	+	1633	16	FSM	ENSMUSG00000003992.16	ENSMUST00000042122.15	1633	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	12.5973542195706	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTTCATTCACTGTGTC	2762	False	NA	-6	True	AATAAA	-14	NA	91609209	91849355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
transcript_36397.known	chr13	+	822	4	FSM	ENSMUSG00000003992.16	ENSMUST00000144659.2	822	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	6.12825877028341	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAACC	-9	True	NA	NA	False	AATATA	-15	NA	91609281	91713329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728
transcript_3640.nic	chr1	+	2766	3	ISM	ENSMUSG00000026270.12	ENSMUST00000117814.8	1268	4	-316	-419	74	419	intron_retention	FALSE	canonical	3	122	junction_1	8.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTTGTACGCTATCAC	2334	False	NA	NA	False	NA	NA	NA	92862171	92869113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_92862737_92865666_92865799_92867044
transcript_36401.known	chr13	-	1541	6	FSM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	29.1108227296997	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	AATAAA	-16	NA	91955824	91944651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869_91954280_91955728
transcript_36403.nic	chr13	-	327	2	ISM	ENSMUSG00000021621.16	ENSMUST00000178084.2	931	4	-54	7111	-10	-5455	5prime_fragment	FALSE	canonical	3	139	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTACTTGAATGAAGACGT	NA	False	NA	NA	False	AAAAAG	-16	NA	91955834	91954058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_91954280_91955728
transcript_36408.known	chr13	-	3937	24	FSM	ENSMUSG00000014850.16	ENSMUST00000022220.13	3937	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	29.9229002971439	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGCTCATTGCATGGCG	NA	False	NA	NA	False	AATAAA	-14	NA	92491511	92348393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372237_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
transcript_3641.known	chr1	-	5391	47	FSM	ENSMUSG00000014602.16	ENSMUST00000171556.8	5391	47	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_30	3.30127145123012	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTTGTGCGTGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	93029569	92946001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_92946222_92946673_92946793_92947528_92947722_92948179_92948333_92948934_92949060_92949447_92949526_92950042_92950244_92950647_92950794_92951180_92951243_92952300_92952435_92953342_92953458_92964567_92964674_92966756_92966842_92966938_92967006_92967466_92967576_92968340_92968397_92969295_92969415_92969806_92969898_92970064_92970234_92970337_92970477_92971310_92971397_92974373_92974493_92980145_92980284_92981981_92982161_92982537_92982687_92983406_92983501_92983678_92983752_92983821_92984003_92986535_92986620_92987918_92988026_92988459_92988540_92990221_92990298_92990588_92990669_92991870_92992005_92993768_92993912_92994777_92994857_92996206_92996283_93000029_93000048_93000760_93000827_93001529_93001608_93002677_93002790_93003872_93004052_93004763_93004830_93005409_93005590_93006482_93006560_93010037_93010203_93029484
transcript_36414.nic	chr13	-	2557	19	ISM	ENSMUSG00000014850.16	ENSMUST00000022220.13	3937	24	-16	38032	-16	-64	5prime_fragment	FALSE	canonical	0	0	junction_13	24.7633241351443	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGATCATCATAAAAAATG	NA	False	NA	NA	False	AAGAAA	-2	NA	92491527	92386425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
transcript_36417.nic	chr13	-	2537	18	ISM	ENSMUSG00000014850.16	ENSMUST00000022220.13	3937	24	-16	44808	-16	-6840	5prime_fragment	FALSE	canonical	0	0	junction_12	24.882700595541	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATACCTTTTTCATTTCTC	NA	False	NA	0	True	NA	NA	NA	92491527	92393201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
transcript_3642.known	chr1	-	6141	49	FSM	ENSMUSG00000014602.16	ENSMUST00000190723.7	6141	49	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_22	3.61702907170451	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAACAAACCATGGCTCCT	NA	False	NA	NA	False	NA	NA	NA	93029673	92945661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_92946222_92946673_92946793_92947528_92947722_92948179_92948333_92948934_92949060_92949447_92949526_92950042_92950244_92950647_92950794_92951180_92951243_92952300_92952435_92953342_92953458_92964567_92964674_92966756_92966842_92966938_92967006_92967466_92967576_92968340_92968397_92969295_92969415_92969806_92969898_92970064_92970234_92970337_92970477_92971310_92971397_92974373_92974493_92979124_92979404_92980145_92980284_92981981_92982161_92982537_92982687_92983406_92983501_92983678_92983752_92983821_92984003_92986535_92986620_92987918_92988026_92988459_92988540_92990221_92990298_92990588_92990669_92991870_92992005_92993273_92993301_92993768_92993912_92994777_92994857_92996206_92996283_93000029_93000048_93000760_93000827_93001529_93001608_93002677_93002790_93003872_93004052_93004763_93004830_93005409_93005590_93006482_93006560_93010037_93010203_93029484
transcript_36428.known	chr13	+	4013	5	FSM	ENSMUSG00000045034.13	ENSMUST00000061594.13	4013	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGACTAAGTTTTATTTC	NA	False	NA	NA	False	AATAAA	-15	NA	92562403	92578166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_92562710_92563583_92563729_92565277_92565361_92569295_92569355_92574746
transcript_3643.known	chr1	-	1366	4	FSM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.36357401145817	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGGAGTCTTTTTCTCT	NA	False	NA	1	True	AATAAA	-39	NA	93233637	93228926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93229518_93230439_93230625_93232329_93232829_93233546
transcript_36431.known	chr13	-	6150	18	FSM	ENSMUSG00000021706.15	ENSMUST00000022217.9	6150	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_14	7.96662588726756	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTCATTTTGTTTACATA	NA	False	NA	NA	False	AATAAA	-44	NA	92667376	92623615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_92625132_92629010_92629179_92630365_92630472_92631442_92631606_92636720_92636802_92640446_92640595_92640983_92641089_92642167_92642251_92644629_92644855_92645398_92645555_92646508_92646632_92647985_92648365_92650294_92650438_92653038_92653201_92655974_92656072_92657623_92659840_92660737_92660847_92667206
transcript_36434.known	chr13	+	5366	12	FSM	ENSMUSG00000021703.10	ENSMUST00000049488.9	5366	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_8	5.03377025451168	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGTTTTCTAT	NA	False	NA	5	True	AATAAA	-15	NA	92747598	92848455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_92747796_92797525_92797694_92819262_92819445_92819863_92819947_92821652_92821747_92825126_92825339_92827451_92827548_92829979_92830107_92838184_92838252_92842018_92842059_92842647_92842793_92844500
transcript_36439.nnic	chr13	-	2114	16	NNC	ENSMUSG00000042167.7	novel	2990	15	NA	NA	-35	214	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	146.35202614093	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTTTTGAAAATGTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	93328928	93283911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_93284174_93284873_93284982_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
transcript_36441.nnic	chr13	-	2062	16	NNC	ENSMUSG00000042167.7	novel	2990	15	NA	NA	-27	214	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_15	152.863977298628	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTTTTGAAAATGTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	93328920	93283911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328300_93328365_93328601
transcript_36443.known	chr13	-	2990	15	FSM	ENSMUSG00000042167.7	ENSMUST00000048702.7	2990	15	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_4	92.51905484928	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTGAGGTGTTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	93328791	93282790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
transcript_36447.nic	chr13	-	1480	11	ISM	ENSMUSG00000042167.7	ENSMUST00000048702.7	2990	15	-190	13370	-88	-1829	5prime_fragment	FALSE	canonical	3	224	junction_1	66.4457673595542	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCCAGTAAGTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	93328981	93296160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
transcript_36449.known	chr13	+	3052	10	FSM	ENSMUSG00000007617.19	ENSMUST00000080127.12	3052	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	16.8244384273313	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCTTTCTCACTCAAAC	NA	False	NA	NA	False	AATACA	-16	NA	93441306	93540189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93522852_93522889_93524031_93524189_93528198_93528310_93529535_93529617_93538548
transcript_36452.known	chr13	+	2765	9	FSM	ENSMUSG00000007617.19	ENSMUST00000060490.11	2765	9	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	6.10199762372946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGTAGTTTCTACAGTA	NA	False	NA	NA	False	AATAAA	-12	NA	93441666	93540298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93524031_93524189_93528198_93528310_93529535_93529617_93538548
transcript_36456.nic	chr13	+	2342	8	ISM	ENSMUSG00000007617.19	ENSMUST00000080127.12	3052	10	-1019	11887	23	5050	5prime_fragment	FALSE	canonical	0	0	junction_6	18.6908249891627	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAGGTAGGCCCCGCCA	NA	False	NA	NA	False	AGTAAA	-1	NA	93440287	93528302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93522852_93522889_93524031_93524189_93528198
transcript_36459.nic	chr13	+	2363	7	ISM	ENSMUSG00000007617.19	ENSMUST00000060490.11	2765	9	-1436	11996	-34	5050	5prime_fragment	FALSE	canonical	3	39	junction_1	6.42261628933256	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAGGTAGGCCCCGCCA	NA	False	NA	NA	False	AGTAAA	-1	NA	93440230	93528302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93524031_93524189_93528198
transcript_3646.known	chr1	-	3097	4	FSM	ENSMUSG00000026273.14	ENSMUST00000112944.8	3097	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	30.4448499567478	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAGAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	93233585	93226932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93229307_93230439_93230625_93232329_93232829_93233546
transcript_36463.nic	chr13	-	2425	6	ISM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	-69	23287	-69	10189	5prime_fragment	FALSE	canonical	0	0	junction_3	1.01980390271856	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGAAATCTTGTTTTTG	1418	False	NA	NA	False	AATAAA	-4	NA	93636385	93589895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_93590084_93590435_93590602_93596127_93596298_93601074_93601226_93609128_93609303_93634809
transcript_36464.nic	chr13	-	2236	5	ISM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	-69	23828	-69	9648	5prime_fragment	FALSE	canonical	0	0	junction_2	0.82915619758885	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGGTGTGCATTTAACC	1418	False	NA	NA	False	NA	NA	NA	93636385	93590436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_93590602_93596127_93596298_93601074_93601226_93609128_93609303_93634809
transcript_36467.known	chr13	-	8776	11	FSM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	1.62788205960997	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTTGATTTTGTTTGTT	1487	False	NA	NA	False	AATAAA	-16	NA	93636316	93566608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_93571928_93575946_93576258_93577522_93578130_93579093_93579190_93589314_93589402_93589895_93590084_93590435_93590602_93596127_93596298_93601074_93601226_93609128_93609303_93634809
transcript_36468.known	chr13	+	2992	16	FSM	ENSMUSG00000042102.8	ENSMUST00000048001.8	2992	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.8720878971384	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGGACAGACTTGCTTTA	2474	False	NA	NA	False	AATAAA	-28	NA	93810940	93889341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_93811041_93813542_93813712_93823435_93823535_93825032_93825198_93828379_93828585_93840294_93840544_93843138_93843338_93845180_93845351_93845689_93845844_93847800_93847967_93848553_93848685_93851965_93852184_93854062_93854221_93857066_93857127_93880800_93880936_93888727
transcript_3647.known	chr1	-	1525	3	FSM	ENSMUSG00000026273.14	ENSMUST00000112942.2	1525	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTATTCTACCATTTCT	NA	False	NA	NA	False	CATAAA	-21	NA	93233586	93229638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93230625_93232329_93232829_93233546
transcript_36470.known	chr13	+	4038	8	FSM	ENSMUSG00000042082.8	ENSMUST00000091403.6	4038	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.27014946921703	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCTTGGACATGGGG	NA	False	NA	NA	False	AATAAA	-21	NA	93908137	94079524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_93908601_93926546_93926734_93930535_93930727_93944003_93944212_93998594_93998839_94016995_94017067_94075734_94075858_94076973
transcript_36473.known	chr13	+	4348	4	FSM	ENSMUSG00000045312.13	ENSMUST00000054274.8	4348	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	5.35412613473634	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTTCAAGTTTGTTGGC	2226	False	NA	9	True	ATTAAA	-18	NA	94194303	94331917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_94194415_94257284_94257344_94310530_94311147_94328355
transcript_36475.known	chr13	-	4259	9	FSM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	9.45300878027732	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATATAGTATAAAAGAGT	NA	False	NA	NA	False	ATTAAA	-30	NA	94422337	94337817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402_94361563_94366221_94366351_94368579_94368689_94369589_94369689_94389500_94389579_94421727
transcript_36480.known	chr13	-	2177	1	FSM	ENSMUSG00000042857.4	ENSMUST00000221110.2	2177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCTCTGTGTGTCTTA	NA	False	NA	NA	False	TATAAA	-28	NA	94495431	94493254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_94493300_94495400
transcript_36484.known	chr13	+	4021	27	FSM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_8	45.9393251760748	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTCCTAATCCTTAC	NA	False	NA	9	True	AATAAA	-19	NA	94495467	94702825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
transcript_3649.known	chr1	-	5779	18	FSM	ENSMUSG00000026274.12	ENSMUST00000027493.4	5779	18	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_17	39.6765468974106	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93270511	93236499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742_93244869_93247681_93247850_93248215_93248398_93248496_93249945_93251923_93252078_93253085_93253255_93254937_93255199_93258476_93258612_93259280_93259422_93262264_93262436_93263331_93263568_93265066_93265303_93270247
transcript_36504.nic	chr13	+	2180	18	ISM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	-23	89310	-23	-67314	5prime_fragment	FALSE	canonical	3	310	junction_8	46.6015281095516	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCATGAAGAAATTTTACTC	NA	False	NA	NA	False	AAGAAA	-7	NA	94495444	94613515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473
transcript_36505.nic	chr13	+	2142	17	ISM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	-26	93387	-26	-71391	5prime_fragment	FALSE	canonical	3	310	junction_8	46.1244495224604	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTGACCTTTCTGAGAT	NA	False	NA	NA	False	AATAGA	-6	NA	94495441	94609438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306
transcript_36511.known	chr13	+	633	5	FSM	ENSMUSG00000042043.7	ENSMUST00000220819.2	633	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	650.566820165308	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_94925511_94951618_94951693_94968867_94968974_94973615_94973703_94979157
transcript_36513.known	chr13	+	559	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_3	49.6185449202211	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
transcript_36516.known	chr13	+	3063	13	FSM	ENSMUSG00000042015.18	ENSMUST00000056512.14	3063	13	0	0	0	0	multi-exon	FALSE	non_canonical	3	44	junction_4	8.57807282163851	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTGGGTTTGTTTTTTT	NA	False	NA	16	True	AATATA	-17	NA	95112855	95159822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_95113098_95114977_95115094_95131757_95131807_95133563_95133696_95136373_95136437_95142238_95142351_95145315_95145379_95146792_95146904_95151538_95151724_95153834_95153957_95154624_95154714_95155339_95155474_95158177
transcript_36521.known	chr13	+	1945	2	FSM	ENSMUSG00000041995.9	ENSMUST00000221807.2	1945	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95460119	95474349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_95460279_95472563
transcript_36522.known	chr13	+	1894	2	FSM	ENSMUSG00000041995.9	ENSMUST00000045909.8	1894	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95461744	95474349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_95461853_95472563
transcript_36525.known	chr13	-	3249	14	FSM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_4	22.6835706778766	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTCTTTGTATTTGC	NA	False	NA	27	True	AATAAA	-14	NA	95511860	95487190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_95488211_95489254_95489355_95490457_95490586_95492900_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188_95501511_95504887_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
transcript_36529.nic	chr13	-	1974	11	ISM	ENSMUSG00000021681.9	ENSMUST00000161671.2	2559	12	-45	2945	-27	-2945	5prime_fragment	FALSE	canonical	3	209	junction_1	19.4360489812101	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGTTGGAAAGAAGAAAAGC	NA	False	NA	NA	False	NA	NA	NA	95511887	95492954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188_95501511_95504887_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
transcript_36532.nic	chr13	-	1181	5	ISM	ENSMUSG00000021681.9	ENSMUST00000161671.2	2559	12	-45	14888	-27	-14888	5prime_fragment	FALSE	canonical	3	239	junction_1	12.0493775772859	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAAAAGGTAATGCTTT	NA	False	NA	NA	False	AAGAAA	-25	NA	95511887	95504897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
transcript_36533.nic	chr13	-	1127	5	ISM	ENSMUSG00000021681.9	ENSMUST00000161671.2	2559	12	-45	14942	-27	-14942	5prime_fragment	FALSE	canonical	3	239	junction_1	12.0493775772859	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAGAAAGAAGACTGAAGA	NA	False	NA	NA	False	NA	NA	NA	95511887	95504951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
transcript_36535.known	chr13	-	2559	12	FSM	ENSMUSG00000021681.9	ENSMUST00000161671.2	2559	12	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_2	23.4175183418153	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAGAAAATAATAAAGA	NA	False	NA	NA	False	AATAAA	-37	NA	95511842	95490009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_95490586_95492900_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188_95501511_95504887_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
transcript_36536.known	chr13	-	2741	2	FSM	ENSMUSG00000021678.10	ENSMUST00000022185.10	2741	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAAGTT	9826	False	NA	NA	False	AATAAA	-16	NA	95661735	95648239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_95650790_95661544
transcript_36538.known	chr13	-	3336	2	FSM	ENSMUSG00000048376.7	ENSMUST00000059193.7	3336	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCATGCTTGGTGTCTG	NA	False	NA	NA	False	AATAAA	-3	NA	95754995	95738310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_95741446_95754794
transcript_36539.known	chr13	-	5847	36	FSM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_26	10.4750042618471	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGTAGAGTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	96028503	95763681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_95764629_95765454_95765564_95766496_95766635_95768531_95768693_95771971_95772185_95774225_95774314_95783269_95783412_95784685_95784789_95794310_95794444_95796625_95796859_95797506_95797592_95798094_95798236_95800570_95800796_95802100_95802265_95804875_95805026_95807736_95807946_95809492_95809563_95810192_95810265_95811821_95811906_95818660_95818832_95819417_95819561_95821361_95821530_95826208_95826300_95844385_95844550_95852564_95852690_95858020_95858182_95861053_95861218_95865970_95866059_95867787_95867967_95869398_95869513_95870391_95870460_95882945_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
transcript_36544.nic	chr13	-	2913	22	ISM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	-75	41321	-75	-68	5prime_fragment	FALSE	canonical	3	39	junction_12	8.70295907141011	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTGAATAAGAAAAAAGGTG	NA	False	NA	NA	False	CATAAA	-35	NA	96028578	95805002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_95805026_95807736_95807946_95809492_95809563_95810192_95810265_95811821_95811906_95818660_95818832_95819417_95819561_95821361_95821530_95826208_95826300_95844385_95844550_95852564_95852690_95858020_95858182_95861053_95861218_95865970_95866059_95867787_95867967_95869398_95869513_95870391_95870460_95882945_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
transcript_36547.nic	chr13	-	2835	21	ISM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	-19	44054	-19	-2801	5prime_fragment	FALSE	canonical	3	39	junction_11	8.87397881448902	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGAGCAGTGAGCCCCT	NA	False	NA	NA	False	NA	NA	NA	96028522	95807735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_95807946_95809492_95809563_95810192_95810265_95811821_95811906_95818660_95818832_95819417_95819561_95821361_95821530_95826208_95826300_95844385_95844550_95852564_95852690_95858020_95858182_95861053_95861218_95865970_95866059_95867787_95867967_95869398_95869513_95870391_95870460_95882945_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
transcript_36549.nic	chr13	-	2611	19	ISM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	-75	46511	-75	1608	5prime_fragment	FALSE	canonical	3	39	junction_9	8.97871282259419	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGACACGTGCATATGGT	NA	False	NA	NA	False	NA	NA	NA	96028578	95810192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_95810265_95811821_95811906_95818660_95818832_95819417_95819561_95821361_95821530_95826208_95826300_95844385_95844550_95852564_95852690_95858020_95858182_95861053_95861218_95865970_95866059_95867787_95867967_95869398_95869513_95870391_95870460_95882945_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
transcript_36550.nic	chr13	-	1159	8	ISM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	-75	104127	-75	1630	5prime_fragment	FALSE	canonical	3	49	junction_2	8.51409395757219	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAAGCGCAAAACTGAA	NA	False	NA	NA	False	AAAAAG	-7	NA	96028578	95867808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_95867967_95869398_95869513_95870391_95870460_95882945_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
transcript_36553.known	chr13	-	632	5	FSM	ENSMUSG00000021676.11	ENSMUST00000238261.2	632	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	6.44204936336256	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAGCCACCCTTGGACT	NA	False	NA	NA	False	AATAAA	-7	NA	96028265	95882819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_95883023_95886500_95886579_95899753_95899911_95974331_95974432_96028171
transcript_36554.known	chr13	-	9101	13	FSM	ENSMUSG00000051111.17	ENSMUST00000161263.8	9101	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.12132034355964	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCTTCTAAATAACTCGA	NA	False	NA	NA	False	AATAAA	-20	NA	96269085	96091101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_96097972_96112495_96112656_96113107_96113312_96114548_96114683_96118345_96118511_96122437_96122527_96123223_96123335_96125598_96125689_96126203_96126338_96166990_96167143_96184914_96185096_96224727_96225409_96268955
transcript_36557.known	chr13	-	2161	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTAGCCAGAGCAATTAG	NA	False	NA	NA	False	NA	NA	NA	96217884	96215723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_96215700_96217900
transcript_3656.known	chr1	+	10315	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_6	62.1028617061949	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGTTCGTCTGTGTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	93270575	93301211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
transcript_36560.known	chr13	+	5183	13	FSM	ENSMUSG00000021671.10	ENSMUST00000099295.6	5183	13	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_9	14.0798812337163	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTCTCTGTACTGGAAA	NA	False	NA	NA	False	NA	NA	NA	96524801	96554245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_96525040_96526730_96526871_96528095_96528184_96529734_96529853_96530999_96531078_96533147_96533339_96535201_96535379_96537257_96537363_96538083_96538264_96539387_96539542_96540913_96541192_96547097_96547275_96550986
transcript_36570.known	chr13	-	4225	15	FSM	ENSMUSG00000021668.16	ENSMUST00000022172.12	4225	15	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	5.85191404236116	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTATTGACTGTCATAT	NA	False	NA	NA	False	AATAAA	-20	NA	96678993	96617197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_96618763_96618965_96619000_96619998_96620914_96623315_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
transcript_36578.known	chr13	-	1089	3	FSM	ENSMUSG00000021668.16	ENSMUST00000222100.2	1089	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAATTCAAAGT	NA	False	NA	NA	False	NA	NA	NA	96679087	96652589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_96653267_96655536_96655696_96678834
transcript_36580.known	chr13	+	2746	18	FSM	ENSMUSG00000021669.16	ENSMUST00000077672.12	2746	18	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_11	11.3473012507266	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCTTCTTTTTACAGGC	NA	False	NA	NA	False	NA	NA	NA	96679242	96774058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_96679768_96685704_96685840_96708418_96708536_96734712_96734821_96735897_96736037_96739580_96739665_96746281_96746440_96748768_96748862_96751281_96751369_96752964_96753058_96753501_96753580_96761202_96761299_96765520_96765654_96767268_96767340_96770580_96770710_96771361_96771492_96772257_96772395_96773625
transcript_36585.known	chr13	+	5285	17	FSM	ENSMUSG00000021669.16	ENSMUST00000109444.3	5285	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_10	9.39081998549647	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGATTTGTTTTCCT	NA	False	NA	NA	False	ATTAAA	-19	NA	96679242	96776675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_96679768_96685704_96685840_96708418_96708536_96734712_96734821_96735897_96736037_96739580_96739665_96746281_96746440_96748768_96748862_96751281_96751369_96752964_96753058_96761202_96761299_96765520_96765654_96767268_96767340_96770580_96770710_96771361_96771492_96772257_96772395_96773625
transcript_36591.known	chr13	+	3054	7	FSM	ENSMUSG00000021669.16	ENSMUST00000222434.2	3054	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	9.04924797366549	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATTTAATATTGACTA	NA	False	NA	NA	False	NA	NA	NA	96679262	96748247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_96679768_96685704_96685840_96708418_96708536_96734712_96734821_96735897_96736037_96739580_96739665_96746281
transcript_36597.known	chr13	-	4425	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	392	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTGTAAGCAGTGGCT	NA	False	NA	-5	True	AGTAAA	-22	NA	96807444	96785474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
transcript_366.known	chr1	+	2728	17	FSM	ENSMUSG00000025915.15	ENSMUST00000097826.6	2728	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	27.8654692226777	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTGTGAATGTGTG	9939	False	NA	NA	False	AATAAA	-11	NA	9918621	9970078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_9918774_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
transcript_36623.known	chr13	+	5087	3	FSM	ENSMUSG00000091387.3	ENSMUST00000171324.3	5087	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	3	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCAACTCCTCGGACTT	NA	False	NA	NA	False	AATAAA	-12	NA	97061196	97087414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_97061457_97072387_97072505_97082704
transcript_36629.nic	chr13	+	3416	21	NIC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	-251	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_1	43.0145033680502	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274193	97312959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_97274535_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
transcript_36631.known	chr13	+	3089	21	FSM	ENSMUSG00000021666.17	ENSMUST00000022170.8	3089	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	52.3769033067057	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274547	97312959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282160_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
transcript_36635.known	chr13	+	3074	20	FSM	ENSMUSG00000021666.17	ENSMUST00000042084.13	3074	20	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	59.2215428348002	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAACAGCCTAACA	NA	False	NA	NA	False	AATAAA	-15	NA	97274444	97312949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_97274535_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
transcript_36643.known	chr13	-	1905	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	0	0	0	0	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	1568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334865	97312838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
transcript_36648.known	chr13	+	4547	13	FSM	ENSMUSG00000041817.15	ENSMUST00000042517.8	4547	13	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_9	17.0739811799514	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCAGTCTTCTCTGTGT	8717	False	NA	14	True	AATAAA	-20	NA	97208150	97266023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_97208220_97228325_97228461_97230098_97230199_97230569_97230656_97234047_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199_97259401_97263003
transcript_36665.known	chr13	+	3701	19	FSM	ENSMUSG00000021666.17	ENSMUST00000161843.8	3701	19	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	32.490264448764	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGTATTTGTAGACAGT	NA	False	NA	NA	False	TATAAA	-11	NA	97274484	97311141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447
transcript_36669.known	chr13	-	2700	6	FSM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_1	171.768914533451	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGTGGTCTAACAGT	NA	False	NA	NA	False	AATAAA	-14	NA	97274445	97265931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
transcript_36675.known	chr13	+	1463	3	FSM	ENSMUSG00000021666.17	ENSMUST00000161518.2	1463	3	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	67.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAATAAAATAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	97274505	97280832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_97274568_97278434_97278519_97279515
transcript_36676.known	chr13	-	2106	3	FSM	ENSMUSG00000060739.9	ENSMUST00000224980.2	2106	3	0	0	0	0	multi-exon	FALSE	canonical	3	818	junction_2	122.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAGGAAAAAGAAGGCA	NA	False	NA	NA	False	NA	NA	NA	97274381	97270153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_97271953_97272028_97272217_97274262
transcript_3668.known	chr1	-	6231	28	FSM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_27	59.547263104276	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGATGGGACTCAT	NA	False	NA	-10	True	AATAAA	-14	NA	93406523	93333661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
transcript_36682.known	chr13	-	1030	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAACGGCCGGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	97235745	97234715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_97234700_97235700
transcript_36683.known	chr13	+	4737	3	FSM	ENSMUSG00000041773.9	ENSMUST00000041623.9	4737	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	2	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCATTGTATTGTGAGTT	NA	False	NA	22	True	AATAAA	-16	NA	97377612	97389542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_97378038_97381478_97383293_97387044
transcript_36702.nnic	chr13	+	2472	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	8	-364	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_3	70.6745278646337	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGATGCAATGTCCTTTCT	NA	False	NA	8	True	NA	NA	NA	97619216	97633151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630912
transcript_36703.nnic	chr13	+	2826	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_3	70.6745278646337	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619226	97633515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630912
transcript_36707.nnic	chr13	+	2400	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	-939	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGAATGTTTTGTCT	NA	False	NA	12	True	AAAAAG	-16	NA	97619208	97632576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
transcript_36708.nnic	chr13	+	2973	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	-366	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGATGCAATGTCCTTT	NA	False	NA	6	True	NA	NA	NA	97619208	97633149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
transcript_36709.nnic	chr13	+	3339	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATTGCGAACTCAAGAC	NA	False	NA	18	True	AATAAA	-15	NA	97619205	97633512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
transcript_36710.nnic	chr13	+	3970	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	631	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTGTGATAATTCTGAA	NA	False	NA	17	True	AATACA	-16	NA	97619208	97634146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
transcript_36717.known	chr13	+	2764	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	70.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619208	97633515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_97619286_97619456_97619541_97630912
transcript_36721.nnic	chr13	+	2879	3	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	10	-366	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	71.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGATGCAATGTCCTTT	NA	False	NA	6	True	NA	NA	NA	97619218	97633149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_97619286_97629663_97630239_97630912
transcript_36722.nnic	chr13	+	3242	3	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	71.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATTGCGAACTCAAGAC	NA	False	NA	18	True	AATAAA	-15	NA	97619218	97633512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_97619286_97629663_97630239_97630912
transcript_36724.known	chr13	-	561	1	FSM	ENSMUSG00000069117.5	ENSMUST00000074072.5	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	711	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCAATCAGATTCGAGA	NA	False	NA	NA	False	AATAAA	-33	NA	97897140	97896579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_97896600_97897100
transcript_36726.known	chr13	-	4120	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCCCTTGATCATGA	NA	False	NA	-53	True	AATGAA	-15	NA	98399549	98383352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
transcript_36740.known	chr13	-	2328	6	FSM	ENSMUSG00000041747.4	ENSMUST00000224842.2	2328	6	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_3	47.5167338944924	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAACAAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	98399521	98391218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98391563_98393608_98393735_98394343_98395798_98395881_98395975_98397306_98397479_98399382
transcript_36741.known	chr13	+	1755	9	FSM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3559414282533	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399749	98410426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
transcript_36743.known	chr13	+	2328	8	FSM	ENSMUSG00000021661.17	ENSMUST00000123924.8	2328	8	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_1	24.7839645327212	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399701	98410426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
transcript_36745.known	chr13	+	1476	8	FSM	ENSMUSG00000021661.17	ENSMUST00000226100.2	1476	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	57.4651624722247	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399646	98410426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_98399985_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
transcript_36747.known	chr13	+	1949	7	FSM	ENSMUSG00000021661.17	ENSMUST00000091356.11	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	62.0510542483634	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399698	98410426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_98399985_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
transcript_36748.known	chr13	+	1887	2	FSM	ENSMUSG00000021661.17	ENSMUST00000223606.2	1887	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAAGTGAGTTACTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	98399664	98404225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_98399985_98402658
transcript_36753.known	chr13	-	1091	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTATCATTTTACTTA	NA	False	NA	-16	True	AATAAA	-37	NA	98453475	98446403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
transcript_36754.known	chr13	-	888	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	3475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	-17	True	AATAAA	-36	NA	98453514	98446404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
transcript_36759.known	chr13	-	1161	4	FSM	ENSMUSG00000052485.8	ENSMUST00000064347.8	1161	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCCCATTTTTCTG	9052	False	NA	NA	False	AATAAA	-16	NA	98831342	98822742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98823025_98824855_98824992_98828511_98829226_98831313
transcript_36760.nnic	chr13	-	1630	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1173	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	22.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854191	98849581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_98850076_98852942_98853093_98853205
transcript_36761.nnic	chr13	-	731	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1190	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	24.5	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854208	98849581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_98850076_98852942_98853093_98854121
transcript_36763.nic	chr13	-	5060	26	NIC	ENSMUSG00000041685.17	novel	5122	26	NA	NA	62	0	combination_of_known_junctions	TRUE	non_canonical	0	0	junction_14	64.1266746370027	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGACTTTGTGCCTTTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	98951895	98859910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_98862285_98862568_98862734_98866696_98866762_98867284_98867485_98868584_98868718_98869025_98869182_98871526_98871639_98879918_98880049_98882308_98882413_98884723_98884813_98886359_98886403_98888414_98888440_98888841_98888854_98891587_98891762_98892073_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_36764.nic	chr13	-	4973	26	NIC	ENSMUSG00000041685.17	novel	5122	26	NA	NA	-127	-276	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_14	64.1266746370027	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCCAGTAGATTCAGTG	NA	False	NA	NA	False	TTTAAA	-33	NA	98952084	98860186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_98862285_98862568_98862734_98866696_98866762_98867284_98867485_98868584_98868718_98869025_98869182_98871526_98871639_98879918_98880049_98882308_98882413_98884723_98884813_98886359_98886403_98888414_98888440_98888841_98888854_98891587_98891762_98892073_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_36765.nic	chr13	-	3642	26	NIC	ENSMUSG00000041685.17	novel	5122	26	NA	NA	62	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_14	64.1266746370027	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAATCCTGTCTCATTTC	NA	False	NA	NA	False	ACTAAA	-15	NA	98951895	98861328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_98862285_98862568_98862734_98866696_98866762_98867284_98867485_98868584_98868718_98869025_98869182_98871526_98871639_98879918_98880049_98882308_98882413_98884723_98884813_98886359_98886403_98888414_98888440_98888841_98888854_98891587_98891762_98892073_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_36774.nic	chr13	-	2017	15	NIC	ENSMUSG00000041685.17	novel	1927	15	NA	NA	-35	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	81.8157462016366	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	98951751	98887742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_98888440_98888841_98888854_98891587_98891762_98892073_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_36776.known	chr13	-	944	9	FSM	ENSMUSG00000041685.17	ENSMUST00000225840.2	944	9	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_4	31.0158729524094	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGCTTGTAATATACTG	NA	False	NA	NA	False	NA	NA	NA	98951716	98901009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_36777.nic	chr13	-	638	5	ISM	ENSMUSG00000041685.17	ENSMUST00000225840.2	944	9	-44	24862	-44	-13517	5prime_fragment	FALSE	canonical	3	287	junction_4	28.7228132326901	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGTAATTATGATAAAAATAT	NA	False	NA	NA	False	AATAGA	-4	NA	98951760	98925871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_36778.nic	chr13	-	414	4	ISM	ENSMUSG00000041685.17	ENSMUST00000225840.2	944	9	-35	25293	-35	-13948	5prime_fragment	FALSE	canonical	3	287	junction_3	26.9485105752103	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACAGGAATTAATAAAGGA	NA	False	NA	NA	False	NA	NA	NA	98951751	98926302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_98926382_98932800_98932876_98942813_98942906_98951583
transcript_36779.known	chr13	-	1927	15	FSM	ENSMUSG00000041685.17	ENSMUST00000225094.2	1927	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	81.8157462016366	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	98951661	98887742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98888440_98888841_98888854_98891587_98891764_98892075_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_36780.known	chr13	-	2964	14	FSM	ENSMUSG00000041685.17	ENSMUST00000224992.2	2964	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.963559488907	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTCTTTCTCTTTCTT	NA	False	NA	NA	False	ATTAAA	-12	NA	98951690	98888888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98890606_98891587_98891764_98892075_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_36783.known	chr13	-	8445	24	FSM	ENSMUSG00000009470.18	ENSMUST00000109399.9	8445	24	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_23	103.521017838	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCACTCTTGATTTT	NA	False	NA	-7	True	AATAAA	-15	NA	99027548	98975526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027422
transcript_36784.known	chr13	-	8453	24	FSM	ENSMUSG00000009470.18	ENSMUST00000109401.8	8453	24	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_23	63.8650810868555	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCACTCTTGATTTT	NA	False	NA	-7	True	AATAAA	-15	NA	99062892	98975526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99062758
transcript_36795.known	chr13	-	2503	21	FSM	ENSMUSG00000009470.18	ENSMUST00000179301.8	2503	21	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_20	72.2616599587914	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGATTCAGCATTC	NA	False	NA	NA	False	NA	NA	NA	99027506	98985730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027434
transcript_36796.nic	chr13	-	2777	21	ISM	ENSMUSG00000009470.18	ENSMUST00000109401.8	8453	24	-212	10204	-212	0	5prime_fragment	FALSE	canonical	3	248	junction_20	68.0707536317911	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAGATTCAGCATTC	NA	False	NA	NA	False	NA	NA	NA	99063104	98985730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99062758
transcript_36798.nic	chr13	-	2534	20	ISM	ENSMUSG00000009470.18	ENSMUST00000109401.8	8453	24	3	11085	3	-881	5prime_fragment	FALSE	canonical	3	248	junction_19	69.2222323500445	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTATTCAATCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	99062889	98986611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99062758
transcript_36805.known	chr13	+	1723	2	FSM	ENSMUSG00000097848.3	ENSMUST00000181742.2	1723	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGACGACTGGTCTTTAGC	6940	False	NA	NA	False	NA	NA	NA	99237213	99244088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_99237334_99242485
transcript_36806.nnic	chr13	-	1788	11	NNC	ENSMUSG00000021650.8	novel	1704	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	145.919292761444	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGGTTGTGTTTCTTTTC	NA	False	NA	-11	True	AATAAA	-16	NA	99481216	99456154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_99456902_99458068_99458183_99462131_99462213_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
transcript_36810.known	chr13	-	1704	10	FSM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_5	28.5894740191448	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGGTTGTGTTTCTTTTC	NA	False	NA	-11	True	AATAAA	-16	NA	99481213	99456154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_99456902_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
transcript_36812.nic	chr13	+	2006	12	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	2	16	junction_6	174.354630538115	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481259	99552070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99537777_99537901_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
transcript_36815.known	chr13	+	1849	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_10	37.2860563750043	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481293	99552070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
transcript_36818.nnic	chr13	+	1720	9	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	145.098027209194	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481292	99552070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_99481384_99484839_99484918_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
transcript_36822.nic	chr13	-	2092	5	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	-128	12855	-128	0	5prime_fragment	FALSE	canonical	3	33	junction_3	7.32717544487642	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAAAAAGGAAATAAAGAC	NA	False	NA	-20	True	NA	NA	NA	99653176	99570808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_99572210_99578141_99578283_99580721_99580805_99644615_99644718_99652811
transcript_36823.known	chr13	-	11808	7	FSM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	21.4741446602394	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTTCCTTGTCATTTG	NA	False	NA	0	True	AATAAA	-40	NA	99653048	99557953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_99562470_99563726_99563966_99565719_99572210_99578141_99578283_99580721_99580805_99644615_99644718_99652811
transcript_36824.known	chr13	-	1364	2	FSM	ENSMUSG00000052727.7	ENSMUST00000223820.2	1364	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99653026	99643568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_99644718_99652811
transcript_36830.known	chr13	-	2123	17	FSM	ENSMUSG00000021646.10	ENSMUST00000022148.7	2123	17	0	0	0	0	multi-exon	FALSE	canonical	2	186	junction_5	41.3428878405948	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTAGGGTTGTTGAGA	669	False	NA	-6	True	AATAAA	-15	NA	100152147	100085040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100085465_100088663_100088750_100090643_100090759_100091122_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
transcript_36833.nnic	chr13	-	2057	17	NNC	ENSMUSG00000021646.10	novel	2123	17	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	2	51	junction_3	69.7078725826574	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTAGGGTTGTTGAGA	637	False	NA	-6	True	AATAAA	-15	NA	100152179	100085040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_100085465_100088663_100088750_100090643_100090759_100091220_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
transcript_36841.nic	chr13	-	2725	17	ISM	ENSMUSG00000049658.14	ENSMUST00000109379.9	7567	38	-253	38099	-21	0	5prime_fragment	FALSE	canonical	3	16	junction_2	5.04975246918104	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCCAAGGAAGGGATACC	6738	False	NA	NA	False	AATACA	-22	NA	100240599	100197911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_100198015_100200866_100200998_100202384_100202575_100203972_100204065_100206584_100206745_100210894_100211054_100212012_100212152_100214339_100214622_100215166_100215308_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230054_100234045_100234106_100234993_100235104_100235460_100235738_100240134
transcript_36848.nic	chr13	-	1650	10	ISM	ENSMUSG00000049658.14	ENSMUST00000109379.9	7567	38	-253	54628	-21	801	5prime_fragment	FALSE	canonical	3	17	junction_2	4.08550584685561	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAGGAGGAACCAAGGTG	6738	False	NA	NA	False	NA	NA	NA	100240599	100214440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_100214622_100215166_100215308_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230054_100234045_100234106_100234993_100235104_100235460_100235738_100240134
transcript_36849.nic	chr13	-	1461	9	ISM	ENSMUSG00000049658.14	ENSMUST00000109379.9	7567	38	-253	55362	-21	67	5prime_fragment	FALSE	canonical	3	17	junction_1	4	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAAGGTACTGATTGCC	6738	False	NA	NA	False	ACTAAA	-42	NA	100240599	100215174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_100215308_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230054_100234045_100234106_100234993_100235104_100235460_100235738_100240134
transcript_3685.nic	chr1	-	1200	7	ISM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	-137	25016	-123	62	5prime_fragment	FALSE	canonical	3	431	junction_6	30.9914862861113	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACAGTGTGGAGGTGGCA	NA	False	NA	4	True	NA	NA	NA	93406660	93358677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
transcript_36853.nic	chr13	-	1273	7	ISM	ENSMUSG00000049658.14	ENSMUST00000109379.9	7567	38	-253	66048	-21	8185	5prime_fragment	FALSE	canonical	3	19	junction_3	3.40342964277702	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAGTATGCCTATAACAT	6738	False	NA	NA	False	NA	NA	NA	100240599	100225860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_100225956_100228701_100228836_100229921_100230054_100234045_100234106_100234993_100235104_100235460_100235738_100240134
transcript_36855.known	chr13	+	601	3	FSM	ENSMUSG00000021643.16	ENSMUST00000022145.15	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	3	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGAATATTATTTTTAT	NA	False	NA	NA	False	AATAAA	-25	NA	100244519	100250746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100244738_100245530_100245640_100250472
transcript_36857.known	chr13	+	1222	9	FSM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	0	0	0	0	multi-exon	TRUE	canonical	3	544	junction_6	97.8154352594722	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTGACTTTATAGATA	NA	False	NA	17	True	AATAAA	-13	NA	100261359	100274198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
transcript_36860.nic	chr13	+	876	7	ISM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	-14	5223	-14	1293	5prime_fragment	FALSE	canonical	3	544	junction_6	101.238030842608	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGACTCCCTGGGAACTG	NA	False	NA	NA	False	NA	NA	NA	100261345	100268975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863
transcript_36863.known	chr13	+	453	3	FSM	ENSMUSG00000021645.17	ENSMUST00000134514.8	453	3	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_2	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTCTCTGCATTCTGAG	NA	False	NA	NA	False	ATTAAA	-4	NA	100261365	100263650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100261474_100263094_100263167_100263377
transcript_36864.nic	chr13	-	2022	17	NIC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	-31	449	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	76.8251871133419	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTGTCTTCTTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	100629118	100596276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
transcript_36865.nic	chr13	-	1541	17	NIC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	76.8251871133419	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAGAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	100629118	100596757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
transcript_36869.known	chr13	-	1656	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAGTTTTTTTTCATTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	100629069	100605087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
transcript_36870.nic	chr13	-	1475	16	ISM	ENSMUSG00000021639.18	ENSMUST00000145266.8	1630	18	-56	8590	-20	0	5prime_fragment	FALSE	canonical	3	30	junction_15	76.4776219992925	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATGAAAGCACTTTGA	NA	False	NA	-19	True	AATAAA	-32	NA	100628902	100605315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
transcript_36876.nic	chr13	-	1201	14	ISM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	-49	7907	-31	615	5prime_fragment	FALSE	canonical	3	225	junction_8	29.6288680594654	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATATAAAGGAGAAAGGTA	NA	False	NA	NA	False	AAGAAA	-12	NA	100629118	100612994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
transcript_36877.known	chr13	-	2443	9	FSM	ENSMUSG00000021638.13	ENSMUST00000160859.8	2443	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	25.6706909723911	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACCACTGTTTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	100688989	100634621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688879
transcript_3688.known	chr1	-	4427	28	FSM	ENSMUSG00000034088.16	ENSMUST00000042498.14	4427	28	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_27	104.811974833924	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	AATAAA	-27	NA	93373408	93335483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93373301
transcript_36881.known	chr13	-	2839	9	FSM	ENSMUSG00000021638.13	ENSMUST00000022140.12	2839	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	20.6272726020674	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTCATTTGATGTCATT	NA	False	NA	NA	False	ATTAAA	-22	NA	100689226	100634270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100689071
transcript_36884.nnic	chr13	-	2772	9	NIC	ENSMUSG00000021638.13	novel	4052	9	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_8	21.5638586528478	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTGCTCATTTGATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	100689015	100634274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688923
transcript_36887.known	chr13	-	3111	7	FSM	ENSMUSG00000021636.16	ENSMUST00000225754.2	3111	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	3.97562014729219	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTGTGCTCCTTA	NA	False	NA	-3	True	ATTAAA	-16	NA	100753210	100732466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100747940_100749093_100753112
transcript_36888.known	chr13	-	3061	7	FSM	ENSMUSG00000021636.16	ENSMUST00000022137.14	3061	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	4.71404520791032	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTGCTCCTTATT	NA	False	NA	-1	True	ATTAAA	-18	NA	100753479	100732464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100747940_100749093_100753433
transcript_36893.known	chr13	-	2839	17	FSM	ENSMUSG00000021635.15	ENSMUST00000022136.14	2839	17	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_16	42.8397723354128	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTCTTCTTATCCTTT	NA	False	NA	-6	True	ATTAAA	-15	NA	100787559	100753671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787329
transcript_36894.known	chr13	-	2392	17	FSM	ENSMUSG00000021635.15	ENSMUST00000177848.3	2392	17	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_16	17.1335516968899	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCAGTGCTTAGTATTTA	NA	False	NA	NA	False	AGTAAA	-13	NA	100787555	100753986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
transcript_36902.known	chr13	+	1298	5	FSM	ENSMUSG00000078941.10	ENSMUST00000022135.15	1298	5	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_4	426.823734110464	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACATCTCTTTAATAGTA	NA	False	NA	37	True	AATAAA	-14	NA	100787486	100802867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558_100800705_100802334
transcript_3691.known	chr1	+	3219	13	FSM	ENSMUSG00000116048.2	ENSMUST00000179353.8	3219	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	266.051999929838	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406714	93437455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93406791_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_36913.known	chr13	+	1184	3	FSM	ENSMUSG00000078941.10	ENSMUST00000190729.2	1184	3	0	0	0	0	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTACTTTGGCAG	NA	False	NA	NA	False	AATAAA	-19	NA	100787887	100792566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100787954_100790698_100790792_100791541
transcript_36916.known	chr13	+	1230	3	FSM	ENSMUSG00000052293.15	ENSMUST00000167256.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	554	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100788114	100792567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100788226_100790698_100790792_100791541
transcript_36918.known	chr13	+	824	3	FSM	ENSMUSG00000052293.15	ENSMUST00000187792.2	824	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	631	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTTTCAACTAAAGTAGG	NA	False	NA	NA	False	NA	NA	NA	100788132	100792068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100788337_100790698_100790792_100791541
transcript_36920.known	chr13	+	778	3	FSM	ENSMUSG00000052293.15	ENSMUST00000185767.7	778	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	620	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAAGTACTCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	100788091	100792023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100788295_100790698_100790792_100791541
transcript_36924.known	chr13	+	452	2	FSM	ENSMUSG00000078941.10	ENSMUST00000185901.2	452	2	0	0	0	0	multi-exon	FALSE	canonical	3	1782	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCTGAATATGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	100787869	100791066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100787954_100790698
transcript_36925.known	chr13	+	2413	12	FSM	ENSMUSG00000048924.15	ENSMUST00000057325.15	2413	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.01073228346206	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGTTTCAATGTCTCTT	NA	False	NA	5	True	TATAAA	-18	NA	100806280	100833748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_100806360_100814411_100814711_100815824_100815884_100818288_100818376_100819274_100819353_100820793_100820880_100823616_100823700_100826826_100826928_100828802_100828911_100830044_100830217_100830877_100831009_100832618
transcript_36929.known	chr13	-	1988	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTTTATGGACTATT	NA	False	NA	NA	False	CATAAA	-17	NA	100867447	100839138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
transcript_36938.known	chr13	-	1159	11	FSM	ENSMUSG00000069089.9	ENSMUST00000225990.2	1159	11	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_6	227.413741889095	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867408	100839817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
transcript_3694.known	chr1	+	3267	13	FSM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	258.994798317564	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406782	93437455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93406903_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_3695.nic	chr1	+	3265	13	NIC	ENSMUSG00000026276.21	novel	477	6	NA	NA	-23	-527	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	275.56259371612	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406918	93437455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_93407037_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_36958.known	chr13	-	469	5	FSM	ENSMUSG00000061474.12	ENSMUST00000076037.9	469	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	598.6340179943	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTGAGCAGAATGAAGT	NA	False	NA	NA	False	AATAAA	-3	NA	100881096	100872659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100880296_100880333_100881037
transcript_36959.nnic	chr13	-	1009	5	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
transcript_36960.nnic	chr13	-	887	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACAAGCTGCCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	100881584	100872584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
transcript_36965.nnic	chr13	-	835	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCAGGTGGTCACTT	NA	False	NA	NA	False	AATAAA	-26	NA	100881584	100872636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
transcript_36970.known	chr13	-	571	4	FSM	ENSMUSG00000061474.12	ENSMUST00000078573.5	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	492.52884856287	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACAAGCTGCCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	100881165	100872584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037
transcript_36971.known	chr13	-	672	4	FSM	ENSMUSG00000061474.12	ENSMUST00000125206.2	672	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	565.986061862147	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCATATATTAAACAACCTT	NA	False	NA	NA	False	AATAAA	-26	NA	100880622	100872687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100880296
transcript_36973.nnic	chr13	-	1361	10	NNC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_6	138.91484201961	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGGACTGGAGAGATG	NA	False	NA	1	True	AATAAA	-41	NA	100912424	100896181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100907981_100908075_100908162_100908212_100909233_100909290_100912194
transcript_36975.known	chr13	-	1251	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	0	0	0	0	multi-exon	TRUE	canonical	3	285	junction_6	26.2865816530031	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGGACTGGAGAGATG	NA	False	NA	1	True	AATAAA	-41	NA	100912407	100896181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
transcript_3698.known	chr1	+	3192	12	FSM	ENSMUSG00000116048.2	ENSMUST00000172165.8	3192	12	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	279.729178354959	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406714	93437455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93406791_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_36980.nnic	chr13	-	1099	8	NIC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	-17	-5	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	115.35888985851	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACTTGCAGGACTGGAG	NA	False	NA	-4	True	AATAAA	-36	NA	100912424	100896186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_100896703_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
transcript_36981.nic	chr13	-	699	8	ISM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	-17	2135	-17	-2135	5prime_fragment	FALSE	canonical	3	285	junction_5	28.0684295017352	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACAGACGGAGATAAAGAT	NA	False	NA	NA	False	GATAAA	-17	NA	100912424	100898316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
transcript_36983.nic	chr13	-	639	8	ISM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	-17	2195	-17	-2195	5prime_fragment	FALSE	canonical	3	285	junction_5	28.0684295017352	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAAGAGGATGTTGACAA	NA	False	NA	NA	False	AATACA	-17	NA	100912424	100898376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
transcript_36991.known	chr13	-	686	2	FSM	ENSMUSG00000045273.9	ENSMUST00000136694.2	686	2	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGCCTGAGCATATACAAA	NA	False	NA	NA	False	NA	NA	NA	100912291	100908700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100909290_100912194
transcript_36994.known	chr13	-	2489	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	0	0	0	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGGTCGGCCAACTCCC	NA	False	NA	76	True	AATAAA	-19	NA	100923078	100915157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
transcript_37.known	ERCC-00108	+	1005	1	FSM	ERCC-00108A	DQ668365	1005	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	985	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00108_+_0_1000
transcript_3700.known	chr1	+	3937	27	FSM	ENSMUSG00000034066.14	ENSMUST00000120301.8	3937	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	3.25017068281892	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCAGGAAGTTCAATTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	93439800	93549698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93439907_93456290_93456502_93487957_93488063_93488865_93488909_93491030_93491110_93495138_93495237_93496802_93496918_93497594_93497743_93502092_93502189_93504091_93504256_93504544_93504614_93505369_93505428_93507461_93507721_93527644_93527824_93531099_93531190_93531931_93532066_93533063_93533146_93535154_93535393_93537697_93537829_93540113_93540183_93540839_93540930_93545273_93545357_93546224_93546344_93546614_93546773_93547875_93547984_93548214_93548367_93548945
transcript_37001.known	chr13	-	2140	8	FSM	ENSMUSG00000041431.17	ENSMUST00000091295.14	2140	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	1285.22781272903	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTTGCCCTTTTGACTG	NA	False	NA	-6	True	AATAAA	-28	NA	100922994	100915239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100921964_100922127_100922240_100922412_100922889
transcript_37013.known	chr13	-	461	2	FSM	ENSMUSG00000041431.17	ENSMUST00000142056.2	461	2	0	0	0	0	multi-exon	FALSE	canonical	3	3969	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGAACTTGCTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	100922983	100922044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100922412_100922889
transcript_37017.known	chr13	-	3179	16	FSM	ENSMUSG00000021629.11	ENSMUST00000067246.6	3179	16	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	28.3666470818577	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTGCAAATGAATAATT	NA	False	NA	-4	True	AATAAA	-19	NA	100969935	100939155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_100939970_100940369_100940499_100943041_100943269_100945591_100945788_100947813_100947944_100949155_100949314_100949805_100950015_100950190_100950480_100951103_100951275_100953516_100953594_100954633_100954722_100957626_100957715_100961423_100961510_100962959_100963027_100965407_100965531_100969608
transcript_3703.known	chr1	-	4249	12	FSM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	0	0	0	0	multi-exon	TRUE	canonical	3	133	junction_7	20.1461601451751	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAGACAGCACTTACAA	NA	False	NA	NA	False	AATAAA	-13	NA	93563444	93547472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
transcript_37043.known	chr13	-	7113	16	FSM	ENSMUSG00000041417.16	ENSMUST00000055518.13	7113	16	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_10	7.37443029814658	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGTTCTTGCTATTCAA	NA	False	NA	NA	False	AATAAA	-25	NA	101904725	101817070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_101821578_101822715_101822887_101823480_101823550_101823638_101823816_101824008_101824152_101825140_101825267_101825486_101825668_101825906_101826006_101826988_101827092_101837954_101838035_101838218_101838421_101839216_101839349_101845427_101845503_101846157_101846251_101893833_101894548_101904484
transcript_37044.nic	chr13	-	2022	11	ISM	ENSMUSG00000041417.16	ENSMUST00000055518.13	7113	16	-23	8117	-23	360	5prime_fragment	FALSE	canonical	2	8	junction_5	8.2516664983505	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCGGGAATATGATAGATTA	NA	False	NA	NA	False	AATATA	-22	NA	101904748	101825187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_101825267_101825486_101825668_101825906_101826006_101826988_101827092_101837954_101838035_101838218_101838421_101839216_101839349_101845427_101845503_101846157_101846251_101893833_101894548_101904484
transcript_37046.known	chr13	-	3934	12	FSM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	30.0305629441708	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTTCAGTTTCTATTCC	9992	False	NA	3	True	AATAAA	-21	NA	103911116	103878119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_37050.nic	chr13	-	1664	10	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	20	7147	18	3709	5prime_fragment	FALSE	canonical	3	148	junction_1	32.4257937260668	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTGGATGCGTCTGCTG	9974	False	NA	NA	False	AAGAAA	-28	NA	103911096	103885266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_37056.nic	chr13	-	1549	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	-35	10856	-35	0	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGGAAGAAGGAGAAGAAGTC	9998	False	NA	-3	True	AAAAAG	-27	NA	103911151	103888975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_37057.nic	chr13	-	1474	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	-35	10931	-35	0	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACAAAGAAAAGGAGAAGGA	9998	False	NA	-78	True	GATAAA	-37	NA	103911151	103889050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_37058.nic	chr13	-	1267	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	47	11056	45	0	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGTGAAGGAGAAAGAG	10001	False	NA	-24	True	NA	NA	NA	103911069	103889175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_3706.known	chr1	-	2821	11	FSM	ENSMUSG00000026277.15	ENSMUST00000151068.8	2821	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_5	14.8354305633507	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGTACAGAGCCTGGC	NA	False	NA	-36	True	AATAAA	-19	NA	93563351	93549623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
transcript_37069.known	chr13	-	4162	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	0	0	0	0	multi-exon	TRUE	canonical	3	279	junction_1	22.4276614920058	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGAGCTCACAGTACTT	NA	False	NA	-13	True	AATAAA	-19	NA	104246122	104159564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_37071.known	chr13	-	2486	12	FSM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_9	21.8272708341221	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGTCTCTGTGTTGTGA	NA	False	NA	NA	False	AAGAAA	-21	NA	104246094	104171718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_37078.nic	chr13	-	798	4	ISM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	-111	26535	-83	5778	5prime_fragment	FALSE	canonical	3	279	junction_1	29.7694847490215	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTTTCTTTCTTTTTA	NA	False	NA	NA	False	ATTAAA	-45	NA	104246205	104198253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_104198361_104205702_104205852_104209270_104209531_104245923
transcript_37079.known	chr13	+	3048	11	FSM	ENSMUSG00000042743.14	ENSMUST00000044385.14	3048	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	16.2775919595006	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATTTTCTTTCCAGTCA	NA	False	NA	NA	False	NA	NA	NA	104246248	104278243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_104246478_104247577_104247698_104254831_104254936_104257974_104258045_104260697_104260798_104265736_104265842_104268444_104268584_104268673_104268737_104271111_104271150_104271347_104271432_104276247
transcript_37087.known	chr13	-	3502	13	FSM	ENSMUSG00000021711.18	ENSMUST00000141557.8	3502	13	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	206.169209766045	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAAAGGATCTGAGTCAA	NA	False	NA	NA	False	AATAAA	-18	NA	104314933	104278663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_37088.known	chr13	-	2342	13	FSM	ENSMUSG00000021711.18	ENSMUST00000022224.16	2342	13	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	196.200152905139	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGATTTTTTTCTTTC	NA	False	NA	-2	True	AATAAA	-42	NA	104314931	104279824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_37094.nic	chr13	-	1759	13	NIC	ENSMUSG00000021711.18	novel	1689	13	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	304.399442892613	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314988	104280461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104290727_104290742_104290799_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_37096.known	chr13	-	1689	13	FSM	ENSMUSG00000021711.18	ENSMUST00000179891.2	1689	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	299.157242191386	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314915	104280461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290727_104290742_104290799_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_37099.known	chr13	-	3538	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	0	0	0	0	multi-exon	TRUE	canonical	3	331	junction_5	157.730704704606	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCTGAGTCAACTATTAT	NA	False	NA	NA	False	AATAAA	-25	NA	104314977	104278656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_37103.nic	chr13	-	1741	12	NIC	ENSMUSG00000021711.18	novel	3502	13	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	331	junction_5	173.024051258921	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314988	104280461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_37112.known	chr13	-	1609	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGATTTTGTATTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	104314947	104310229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104311513_104314621
transcript_37115.known	chr13	+	3416	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	34.1	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGACTGTGACGTATA	NA	False	NA	11	True	AATATA	-25	NA	104315304	104339525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
transcript_37119.nnic	chr13	+	3242	11	NNC	ENSMUSG00000021712.16	novel	3416	11	NA	NA	4466	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	80.9177977950463	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGACTGTGACGTATA	NA	False	NA	11	True	AATATA	-25	NA	104320071	104339525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_104320173_104320495_104320549_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
transcript_37129.known	chr13	-	2342	11	FSM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	27.1368752806951	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACGTGTCAAATGAC	NA	False	NA	-13	True	TATAAA	-11	NA	104365330	104341631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
transcript_3713.known	chr1	+	1468	5	FSM	ENSMUSG00000026278.15	ENSMUST00000027499.13	1468	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	2.9474565306379	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAGACTCTACTCTGCT	NA	False	NA	6	True	AATAAA	-16	NA	93613381	93623486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93613577_93614139_93614392_93616878_93617008_93621781_93621946_93622758
transcript_37131.known	chr13	+	1353	10	FSM	ENSMUSG00000021714.16	ENSMUST00000224500.2	1353	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	127.2119840616	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365118	104386125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370741_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
transcript_37135.nic	chr13	+	485	6	ISM	ENSMUSG00000021714.16	ENSMUST00000070761.10	1306	10	-51	4887	-51	0	5prime_fragment	FALSE	canonical	3	409	junction_5	26.4696052105051	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGTTAAAAGAAGACTTA	NA	False	NA	NA	False	NA	NA	NA	104365411	104378754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696
transcript_37141.known	chr13	+	351	5	FSM	ENSMUSG00000021714.16	ENSMUST00000225557.2	351	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	198.569100063429	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGACCTGTGGAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	104365475	104371539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104371504
transcript_37142.known	chr13	+	1306	10	FSM	ENSMUSG00000021714.16	ENSMUST00000070761.10	1306	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_9	143.8340092684	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTTTATGTAAAATATTG	NA	False	NA	NA	False	AATAAA	-13	NA	104365462	104383641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104383074
transcript_37150.known	chr13	-	2071	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGCCTCCCGCTTTATT	NA	False	NA	1	True	AATAAA	-37	NA	104953461	104767647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
transcript_37156.nic	chr13	-	774	6	ISM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	12	173149	12	3433	5prime_fragment	FALSE	canonical	3	658	junction_3	30.5718825066433	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAGTCAAGAAATT	NA	False	NA	NA	False	ATTAAA	-22	NA	104953449	104940796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
transcript_37157.known	chr13	+	2365	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAAAGTCATTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	104953684	104975782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
transcript_37162.known	chr13	-	1310	3	FSM	ENSMUSG00000042655.6	ENSMUST00000043061.5	1310	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTTCAATGACAAATGTA	NA	False	NA	NA	False	AATAAA	-18	NA	105000401	104981790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_104982572_104994796_104994955_105000030
transcript_37163.known	chr13	-	7077	6	FSM	ENSMUSG00000021719.10	ENSMUST00000063551.7	7077	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGAGTCATTGTAAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	105191438	105082411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_105088091_105100591_105100663_105103488_105103637_105119373_105119505_105189465_105189633_105190557
transcript_37164.known	chr13	-	3279	8	FSM	ENSMUSG00000021720.12	ENSMUST00000226044.2	3279	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.8070158058105	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGAGATGCATGCTTGT	NA	False	NA	NA	False	ATTAAA	-9	NA	105430910	105266508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_105268072_105304035_105304162_105317957_105318184_105383170_105383207_105386118_105387076_105388759_105388856_105407412_105407548_105430770
transcript_37168.known	chr13	-	4325	30	FSM	ENSMUSG00000042590.18	ENSMUST00000080856.14	4325	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	115.519794104579	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGACTTGTTGTCTGTT	NA	False	NA	-6	True	ATTAAA	-19	NA	107073466	106930946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
transcript_37196.known	chr13	-	5304	20	FSM	ENSMUSG00000021693.21	ENSMUST00000022204.16	5304	20	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_15	23.883141169724	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTATGTTGTGTGTGTCTG	NA	False	NA	NA	False	AATAAA	-39	NA	107158626	107095503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493_107113637_107114531_107114624_107115479_107115544_107115984_107116076_107119031_107119195_107119699_107119755_107121571_107121668_107123776_107123878_107124460_107124584_107126545_107126601_107129670_107129788_107130355_107130451_107158519
transcript_37203.known	chr13	+	2051	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	0	0	0	0	multi-exon	FALSE	canonical	3	504	junction_4	50.5395680025492	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGCCTACAGTTTTTCC	NA	False	NA	NA	False	AGTAAA	-13	NA	107083666	107096268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
transcript_37213.nic	chr13	+	1345	11	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	-30	-843	intron_retention	TRUE	canonical	3	551	junction_5	39.2372272210971	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACCTAGTGTTTTATAT	NA	False	NA	12	True	NA	NA	NA	107083604	107095425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
transcript_37223.known	chr13	+	3338	10	FSM	ENSMUSG00000021692.10	ENSMUST00000223870.2	3338	10	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_4	41.347966346456	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGCAAGTTTGTGTCTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	107083685	107096732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_107083792_107084093_107084168_107085208_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
transcript_37232.known	chr13	+	644	2	FSM	ENSMUSG00000021692.10	ENSMUST00000223851.2	644	2	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTACGTCCAAATCACA	NA	False	NA	NA	False	NA	NA	NA	107083634	107084580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_107083792_107084093
transcript_37233.known	chr13	+	1810	3	FSM	ENSMUSG00000071181.3	ENSMUST00000225489.2	1810	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATTATAATGTTATTAT	NA	False	NA	NA	False	ATTAAA	-17	NA	107159060	107168554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_107160491_107162906_107162964_107168231
transcript_37244.nnic	chr13	-	641	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	-18	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	252.741345054583	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGATCCCTTCGTATTTC	NA	False	NA	-7	True	AATAAA	-9	NA	108295175	108189128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_108189199_108189247_108189489_108217886_108217928_108228067_108228158_108294976
transcript_37246.known	chr13	-	678	4	FSM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_2	39.4151691047439	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295157	108189122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_108189489_108217886_108217928_108228067_108228158_108294976
transcript_3725.known	chr1	+	4173	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCTTCTTGAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	93682626	93718332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
transcript_37251.known	chr13	-	556	3	FSM	ENSMUSG00000068184.8	ENSMUST00000223734.2	556	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	306.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTGTAAGGATATGGCT	NA	False	NA	-50	True	NA	NA	NA	108295125	108189171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_108189489_108228067_108228158_108294976
transcript_37252.nic	chr13	-	331	3	ISM	ENSMUSG00000068184.8	ENSMUST00000225830.2	250	4	-157	1025	-18	-1025	5prime_fragment	FALSE	canonical	3	548	junction_1	43	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAATACATGGGAACTAC	NA	False	NA	NA	False	NA	NA	NA	108295175	108217885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_108217928_108228067_108228158_108294976
transcript_37254.known	chr13	-	250	4	FSM	ENSMUSG00000068184.8	ENSMUST00000225830.2	250	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	276.594769774605	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATGGATTGAACCTCTG	NA	False	NA	NA	False	NA	NA	NA	108295018	108216860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_108216938_108217886_108217928_108228067_108228158_108294976
transcript_37255.known	chr13	+	1918	3	FSM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	47	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108180979	108185706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108181021_108182958_108183103_108183973
transcript_37256.known	chr13	+	2097	3	FSM	ENSMUSG00000071180.6	ENSMUST00000225972.2	2097	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	82	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108181022	108185706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108181243_108182958_108183103_108183973
transcript_37257.known	chr13	+	1092	3	FSM	ENSMUSG00000071180.6	ENSMUST00000226042.2	1092	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	87.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGCTTAAAGTATTCAAG	NA	False	NA	NA	False	AGTAAA	-32	NA	108181019	108184773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108181168_108182958_108183103_108183973
transcript_37262.known	chr13	+	2111	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	12.8281714780819	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295271	108331519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
transcript_37265.known	chr13	+	2095	12	FSM	ENSMUSG00000021694.19	ENSMUST00000152634.8	2095	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	31.8161038282489	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295287	108331519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
transcript_37268.known	chr13	+	2395	11	FSM	ENSMUSG00000021694.19	ENSMUST00000123657.8	2395	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	15.1489273547667	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGATAGAAAATAAAACT	NA	False	NA	NA	False	NA	NA	NA	108295264	108331898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
transcript_37271.known	chr13	+	3163	2	FSM	ENSMUSG00000021694.19	ENSMUST00000137425.2	3163	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAAAAAAAAAAATCTG	NA	False	NA	NA	False	NA	NA	NA	108295271	108300198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108295405_108297168
transcript_37272.known	chr13	+	2351	8	FSM	ENSMUSG00000021696.10	ENSMUST00000225550.2	2351	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	34.299997025049	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACTATGAGTTTTGCCT	NA	False	NA	NA	False	AATAAA	-20	NA	108350943	108420607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108351035_108393200_108393333_108403723_108403869_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
transcript_37277.known	chr13	+	4013	8	FSM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.4045724586758	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTGTCATGTCTAACT	NA	False	NA	NA	False	NA	NA	NA	108350937	108422217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108351035_108393200_108393333_108403723_108403915_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
transcript_37287.known	chr13	+	2563	11	FSM	ENSMUSG00000021697.13	ENSMUST00000051594.12	2563	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	8.78009111570034	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTTTTTCTTCTT	2847	False	NA	39	True	NA	NA	NA	108452865	108526119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108453004_108460439_108460706_108493927_108494064_108498768_108498897_108500066_108500198_108505346_108505395_108510246_108510388_108519289_108519457_108521259_108521437_108523368_108523555_108525074
transcript_37289.known	chr13	+	674	2	FSM	ENSMUSG00000021697.13	ENSMUST00000168037.2	674	2	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGTAACTTAGTGCTTCT	2883	False	NA	NA	False	NA	NA	NA	108452901	108461011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108453004_108460439
transcript_37291.known	chr13	+	2123	15	FSM	ENSMUSG00000021699.18	ENSMUST00000135275.8	2123	15	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_1	7.84544583871199	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTCTGTTTTTTTGGTTT	NA	False	NA	NA	False	CATAAA	-12	NA	109769313	110087898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_109769445_109876920_109877113_109894110_109894148_109906067_109906142_109909164_109909215_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
transcript_37292.known	chr13	+	2167	15	FSM	ENSMUSG00000021699.18	ENSMUST00000074103.12	2167	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	6.47640931002824	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTTTGTTGAACAAAACTG	NA	False	NA	NA	False	NA	NA	NA	109822689	110088008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_109822755_109876920_109877113_109894110_109894148_109906067_109906142_109909164_109909215_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
transcript_37293.known	chr13	+	2051	11	FSM	ENSMUSG00000021699.18	ENSMUST00000119672.8	2051	11	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6.78896162899747	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTTTTTTAAAGTAGAA	NA	False	NA	NA	False	CATAAA	-35	NA	110039635	110087921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_110040025_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
transcript_37294.known	chr13	+	795	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3246	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	108807136	108807931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_108807100_108807900
transcript_37295.known	chr13	+	2800	14	FSM	ENSMUSG00000021701.9	ENSMUST00000022212.9	2800	14	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	11.0769230769231	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGTCTCCTGTCCTTGC	NA	False	NA	6	True	AATAAA	-17	NA	110531579	110537378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_110531972_110532548_110532657_110532809_110532927_110533124_110533255_110533440_110533529_110534004_110534101_110534221_110534421_110534507_110534656_110534906_110535005_110535212_110535343_110535554_110535796_110535913_110536044_110536296_110536408_110536566
transcript_37301.known	chr13	-	3694	13	FSM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_7	122.771100245765	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	-4	True	AATAAA	-15	NA	111626645	111562213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
transcript_37309.known	chr13	-	3299	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTTTCCAAACAAATTC	NA	False	NA	NA	False	ACTAAA	-35	NA	111626562	111562465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
transcript_37326.nic	chr13	-	2244	11	ISM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	236	10856	153	1535	5prime_fragment	FALSE	canonical	3	874	junction_5	124.572709691971	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATATAAACAGAAACTTT	NA	False	NA	NA	False	AAGAAA	-1	NA	111626409	111573069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
transcript_3733.known	chr1	+	4186	12	FSM	ENSMUSG00000026280.18	ENSMUST00000135762.8	4186	12	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_9	30.7520072582787	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACATGAATTTCTG	NA	False	NA	14	True	ATTAAA	-20	NA	93682766	93715901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
transcript_37341.known	chr13	+	621	4	FSM	ENSMUSG00000086649.2	ENSMUST00000156236.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	8.73053390247253	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGCTACCGAAAACACTT	861	False	NA	-3	True	NA	NA	NA	111716794	111781364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_111716936_111717450_111717511_111778756_111779023_111781210
transcript_37344.known	chr13	+	4143	13	FSM	ENSMUSG00000032727.15	ENSMUST00000109271.3	4143	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_9	33.2927878409457	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCATAAAAAATCTGCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	111822884	111854170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_111822889_111824361_111824387_111827769_111827916_111840162_111840298_111841755_111841877_111842535_111842622_111843171_111843248_111844747_111844900_111846259_111846342_111848222_111848315_111850774_111850903_111850978_111851122_111851217
transcript_37349.known	chr13	-	6978	20	FSM	ENSMUSG00000021754.18	ENSMUST00000109267.9	6978	20	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_8	9.29659038560826	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTATTTTGGCTTTTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	111945527	111882961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_111885584_111886976_111887109_111887752_111887896_111888898_111889031_111890272_111890436_111891176_111891330_111891644_111892897_111893146_111893337_111893627_111893720_111894599_111894722_111896485_111896765_111899587_111899772_111900032_111900115_111900615_111900738_111904496_111904646_111905010_111905128_111905820_111906022_111909129_111909331_111912401_111912553_111945036
transcript_37353.nic	chr13	-	3519	14	ISM	ENSMUSG00000021754.18	ENSMUST00000109267.9	6978	20	-25	8822	-25	-1682	5prime_fragment	FALSE	canonical	3	32	junction_2	7.89951687534784	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGCAAAGAAAAGATGGAAG	NA	False	NA	3	True	NA	NA	NA	111945552	111891783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_111892897_111893146_111893337_111893627_111893720_111894599_111894722_111896485_111896765_111899587_111899772_111900032_111900115_111900615_111900738_111904496_111904646_111905010_111905128_111905820_111906022_111909129_111909331_111912401_111912553_111945036
transcript_37355.known	chr13	+	8678	17	FSM	ENSMUSG00000021756.13	ENSMUST00000183663.8	8678	17	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_16	42.4389267065038	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATACGTGTTCTCCCAT	NA	False	NA	NA	False	TATAAA	-15	NA	112600603	112646620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112624242_112624404_112625037_112625193_112627016_112627177_112630122_112630206_112631112_112631324_112631723_112631907_112633818_112633921_112634255_112634403_112635282_112635424_112637646_112637744_112639324_112639407_112640238
transcript_37360.known	chr13	+	2985	16	FSM	ENSMUSG00000021756.13	ENSMUST00000184311.8	2985	16	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	97.956770510715	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGAGTGGCTTCAGATGAG	NA	False	NA	NA	False	AATAAA	-7	NA	112600614	112641025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_112600785_112611564_112611644_112616518_112616825_112617957_112618079_112624242_112624404_112625037_112625193_112627016_112627177_112630122_112630206_112631112_112631324_112631723_112631907_112633818_112633921_112634255_112634403_112635282_112635424_112637646_112637744_112639324_112639407_112640238
transcript_37362.nnic	chr13	+	1827	6	NNC	ENSMUSG00000021756.13	novel	3004	6	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	158.377523657873	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGTTCCAATATTATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	112600597	112620150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112619103
transcript_37363.nnic	chr13	+	2324	6	NNC	ENSMUSG00000021756.13	novel	8678	17	NA	NA	-6	497	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	158.377523657873	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTCTTCTGCATAGCTTA	NA	False	NA	NA	False	AATAAA	-19	NA	112600597	112620647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112619103
transcript_37369.known	chr13	-	3012	22	FSM	ENSMUSG00000021758.15	ENSMUST00000099166.10	3012	22	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	9.06389513461723	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCCAACAGCATTTT	NA	False	NA	-1	True	AATAAA	-22	NA	112789009	112734868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777762_112781042_112781101_112787865_112787953_112788809
transcript_37372.known	chr13	+	8910	15	FSM	ENSMUSG00000047789.6	ENSMUST00000052514.6	8910	15	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_2	7.31122983038101	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATATTTTTTCTTGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	112797299	112875283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_112797407_112806120_112806266_112822599_112822733_112825806_112825929_112826055_112826120_112826692_112826787_112831774_112831946_112834518_112834579_112837990_112838186_112840071_112840180_112850674_112850782_112859731_112859846_112862580_112862730_112865731_112865822_112868032
transcript_37385.known	chr13	-	3689	27	FSM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	0	0	0	0	multi-exon	TRUE	canonical	3	524	junction_21	59.6473487509525	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTGAATTTCAGGAACC	7236	False	NA	NA	False	AAAAAG	-14	NA	113063932	113003951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
transcript_37406.known	chr13	+	1598	6	FSM	ENSMUSG00000021759.15	ENSMUST00000016144.12	1598	6	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_2	66.7730484551964	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_112937801_112971392_112971548_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_37409.known	chr13	+	1272	6	FSM	ENSMUSG00000021759.15	ENSMUST00000070951.8	1272	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	139.137342219837	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTACAGACCATTCTATA	9708	False	NA	NA	False	NA	NA	NA	112937396	113004176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_112937801_112987936_112988089_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_3741.known	chr1	-	5558	6	FSM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_4	24.3770383763081	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACAAAAGCAGA	NA	False	NA	NA	False	NA	NA	NA	93682502	93629656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677568_93678708_93682178
transcript_37416.nnic	chr13	+	1456	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9624	False	NA	14	True	AATAAA	-29	NA	112937312	113004428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_3742.known	chr1	-	2096	6	FSM	ENSMUSG00000026279.15	ENSMUST00000112905.4	2096	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	163.460820993901	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTAGACTGTACAT	NA	False	NA	-1	True	AATAAA	-38	NA	93682586	93633111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677659_93678708_93682178
transcript_37420.known	chr13	+	4682	27	FSM	ENSMUSG00000042426.7	ENSMUST00000038574.7	4682	27	0	0	0	0	multi-exon	TRUE	canonical	3	222	junction_12	28.2580040501697	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTCCATCTCTGTGT	NA	False	NA	18	True	AATAAA	-18	NA	113063987	113105966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617_113069764_113072002_113072132_113076906_113077034_113078206_113078366_113081027_113081194_113081603_113081728_113083296_113083909_113084745_113084890_113089336_113089514_113090207_113090349_113091681_113091827_113091933_113092052_113092915_113093001_113095446_113095536_113096652_113096782_113096856_113096933_113097594_113097820_113099267_113099405_113099796_113099891_113100980_113101275_113101748_113101881_113103069_113103167_113105668
transcript_37430.nic	chr13	+	790	5	ISM	ENSMUSG00000042426.7	ENSMUST00000224176.2	1272	8	194	8500	0	1052	5prime_fragment	FALSE	canonical	3	291	junction_2	20.0499376557634	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAATTTTTTAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	113064181	113069763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617
transcript_37431.known	chr13	+	1736	3	FSM	ENSMUSG00000042426.7	ENSMUST00000223866.2	1736	3	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_2	16	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	113064181	113068711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_113064508_113066160_113066235_113067375
transcript_37432.known	chr13	+	1272	8	FSM	ENSMUSG00000042426.7	ENSMUST00000224176.2	1272	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	108.995038269395	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAATGAGAAGAAAAAG	NA	False	NA	NA	False	CATAAA	-12	NA	113063987	113078263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617_113069764_113072002_113072132_113076931_113077034_113078206
transcript_37433.known	chr13	-	1042	3	FSM	ENSMUSG00000021760.6	ENSMUST00000022282.6	1042	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	4	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTGCATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	113182944	113179292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_113179834_113181965_113182228_113182705
transcript_37434.known	chr13	-	769	2	FSM	ENSMUSG00000021760.6	ENSMUST00000231962.2	769	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCATTTTTTTTTCTTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	113182927	113179286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_113179834_113182705
transcript_37435.known	chr13	+	8274	10	FSM	ENSMUSG00000021763.18	ENSMUST00000136755.10	8274	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	5.32870169256969	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTCTCTGTCATTTGTT	NA	False	NA	NA	False	NA	NA	NA	113429692	113507049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_113429869_113453617_113453782_113454198_113457754_113459268_113459740_113464108_113464286_113478903_113479103_113483044_113483177_113488130_113488301_113502617_113502802_113504003
transcript_37439.known	chr13	-	4447	2	FSM	ENSMUSG00000042364.12	ENSMUST00000109241.5	4447	2	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_1	0	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCTTGTCTTTTATTTCTA	NA	False	NA	0	True	AATAAA	-21	NA	113755100	113728714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_113731399_113753337
transcript_3744.known	chr1	-	713	5	FSM	ENSMUSG00000026279.15	ENSMUST00000189728.7	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	175.089262948931	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTAGACTGTACATTTT	NA	False	NA	2	True	AATAAA	-41	NA	93659648	93633108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93659578
transcript_37448.nnic	chr13	+	2496	6	NNC	ENSMUSG00000042348.11	novel	3364	5	NA	NA	0	654	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	152.769892321753	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGATTTTTTTTTTCCG	NA	False	NA	NA	False	AATAAA	-5	NA	113931040	114293190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239_114291977_114292037
transcript_37449.nnic	chr13	+	3307	6	NNC	ENSMUSG00000042348.11	novel	1966	6	NA	NA	-8	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	152.769892321753	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCGTTTCCTGACTGACT	NA	False	NA	13	True	AATAAA	-13	NA	113931032	114293993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239_114291977_114292037
transcript_3745.known	chr1	-	2001	3	FSM	ENSMUSG00000026279.15	ENSMUST00000189173.2	2001	3	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	9	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAC	NA	False	NA	NA	False	NA	NA	NA	93682372	93652370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93653039_93677568_93678708_93682178
transcript_37452.known	chr13	+	3364	5	FSM	ENSMUSG00000042348.11	ENSMUST00000091201.7	3364	5	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	23.636571240347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCTGACTGACTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	113931040	114293997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239
transcript_37457.nic	chr13	+	2100	4	ISM	ENSMUSG00000042348.11	ENSMUST00000091201.7	3364	5	-212	188389	-212	-186204	5prime_fragment	FALSE	canonical	3	349	junction_1	12.0277457017791	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCATTTATGTTATTACC	NA	False	NA	NA	False	AAGAAA	-7	NA	113930828	114105608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117
transcript_37460.nic	chr13	+	509	2	ISM	ENSMUSG00000042348.11	ENSMUST00000224068.2	1002	4	-114	232710	3	-232710	5prime_fragment	FALSE	canonical	3	349	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGCACGGACTAGCCGT	NA	False	NA	NA	False	TTTAAA	-33	NA	113931043	114059102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_113931233_114058782
transcript_37461.known	chr13	-	686	6	FSM	ENSMUSG00000021764.9	ENSMUST00000225707.2	686	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	793.529986830996	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524585	114425183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114523943_114523994_114524494
transcript_37462.known	chr13	-	571	4	FSM	ENSMUSG00000021764.9	ENSMUST00000225035.2	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	707.770364517256	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524599	114425183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114524494
transcript_37466.known	chr13	-	1113	6	FSM	ENSMUSG00000021765.10	ENSMUST00000231252.2	1113	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	7.29383301152419	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGGAAAGAAAAAAGATAGAA	NA	False	NA	NA	False	NA	NA	NA	114595122	114589877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_114590042_114590815_114591044_114591656_114591882_114592219_114592439_114592898_114593091_114595037
transcript_37467.known	chr13	-	2833	6	FSM	ENSMUSG00000021765.10	ENSMUST00000223640.3	2833	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.97423830966508	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAAAATGT	NA	False	NA	NA	False	TATAAA	-36	NA	114595487	114588825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_114590342_114590815_114591047_114591656_114591882_114592219_114592439_114592898_114593091_114595037
transcript_37475.known	chr13	+	1152	7	FSM	ENSMUSG00000015536.15	ENSMUST00000015680.11	1152	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	16.9844700306551	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATAGATCCTGTCTCC	NA	False	NA	NA	False	AATAAA	-18	NA	114954812	114965259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
transcript_37476.nic	chr13	+	770	6	ISM	ENSMUSG00000015536.15	ENSMUST00000166104.9	1193	7	-13	2443	-13	32	5prime_fragment	TRUE	canonical	3	133	junction_2	9.35093578204877	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAGTGAGGAAAATACCT	NA	False	NA	NA	False	TTTAAA	-25	NA	114954758	114962816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693
transcript_37480.known	chr13	+	745	6	FSM	ENSMUSG00000015536.15	ENSMUST00000164737.8	745	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	76.0121042992496	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCTCGCAGTGCGCTGC	NA	False	NA	NA	False	AATAGA	-30	NA	114954822	114965080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961802_114962693_114962818_114964824
transcript_37481.known	chr13	+	1855	6	FSM	ENSMUSG00000015536.15	ENSMUST00000166176.9	1855	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	59.3450924677011	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGAAAGGATTTTCTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	114954794	114966066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
transcript_37482.known	chr13	+	754	5	FSM	ENSMUSG00000015536.15	ENSMUST00000050131.14	754	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	9.60143218483576	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGCCTGTGGGAATGTC	NA	False	NA	NA	False	NA	NA	NA	114954812	114962058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746
transcript_37484.known	chr13	+	733	5	FSM	ENSMUSG00000015536.15	ENSMUST00000184046.8	733	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	79.8044484975618	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTACATAATGTAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	114954805	114965210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_114954860_114957337_114957483_114961746_114961771_114962693_114962818_114964824
transcript_37487.known	chr13	+	469	3	FSM	ENSMUSG00000015536.15	ENSMUST00000165669.9	469	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	9.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAGGTTGTGATGAATA	NA	False	NA	NA	False	NA	NA	NA	114954779	114957604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_114954860_114955871_114955994_114957337
transcript_37488.known	chr13	-	1600	2	FSM	ENSMUSG00000042275.10	ENSMUST00000109226.5	1600	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTAGTTCGAGTTAC	NA	False	NA	-1	True	AATAAA	-22	NA	115226722	115224890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_115225498_115225729
transcript_37489.known	chr13	-	2965	26	FSM	ENSMUSG00000021725.10	ENSMUST00000223949.2	2965	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.530659966456864	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTTGTGCTGATATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	117161931	116991448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_116991829_116998745_116998831_116999610_116999681_117000721_117000796_117003571_117003642_117004661_117004735_117004975_117005089_117005958_117006008_117008178_117008247_117013066_117013133_117014026_117014153_117015530_117015624_117029535_117029632_117029732_117029784_117031171_117031731_117032191_117032318_117039325_117039393_117047400_117047492_117047919_117047981_117059105_117059201_117061501_117061580_117063052_117063124_117063837_117063928_117075279_117075318_117160710_117160766_117161711
transcript_37491.known	chr13	+	2923	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCCTTACTGTTGTCTG	NA	False	NA	NA	False	AATACA	-17	NA	117356807	117410951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
transcript_37497.nnic	chr13	-	1382	6	NNC	ENSMUSG00000021731.11	novel	3319	5	NA	NA	-7	-1886	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	780.334543641379	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATTTCTTATGTTGACC	NA	False	NA	-10	True	ATTAAA	-20	NA	118523795	118516802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_118517206_118519411_118519589_118521102_118521209_118521769_118521916_118523187_118523308_118523365
transcript_37500.known	chr13	-	3319	5	FSM	ENSMUSG00000021731.11	ENSMUST00000022245.10	3319	5	0	0	0	0	multi-exon	FALSE	canonical	3	1748	junction_3	110.939172522604	898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTGAGGCCTGAGTGTT	NA	False	NA	NA	False	TTTAAA	-19	NA	118523788	118514916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_118517206_118519411_118519589_118521102_118521209_118521769_118521916_118523187
transcript_37502.known	chr13	+	4114	3	FSM	ENSMUSG00000021732.15	ENSMUST00000022246.9	4114	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTACTGTTCTTATTT	NA	False	NA	NA	False	AATAAA	-28	NA	118851234	118928651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_118852248_118918041_118918146_118925654
transcript_37509.nnic	chr13	-	3533	17	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-313	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	55.0277983727316	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545801	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511192_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37513.nnic	chr13	-	3598	17	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-313	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	55.0277983727316	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545801	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511257_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37516.nnic	chr13	-	3626	17	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-313	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	55.0277983727316	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545801	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511285_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37520.nnic	chr13	-	3638	17	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-313	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	55.0277983727316	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545801	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511297_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37524.nnic	chr13	-	3452	16	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-313	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	56.4381273805415	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545801	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509074_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37526.nnic	chr13	-	3460	16	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-313	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	56.4381273805415	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545801	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509082_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37529.nnic	chr13	-	3471	16	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-313	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	56.4381273805415	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545801	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509093_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37532.nnic	chr13	-	3251	16	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-67	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	56.4381273805415	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545555	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509119_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37545.nnic	chr13	-	2046	9	NNC	ENSMUSG00000025453.19	novel	3122	15	NA	NA	-21	-80	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_2	69.7311802567546	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545554	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_119472943_119474911_119474947_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37548.known	chr13	-	1885	4	FSM	ENSMUSG00000025453.19	ENSMUST00000144599.2	1885	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	27.3536509852382	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTCGTTGAGACTTT	NA	False	NA	NA	False	AATAAA	-14	NA	119545533	119530007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37551.known	chr13	-	3339	17	FSM	ENSMUSG00000116207.2	ENSMUST00000223268.2	3339	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	55.0277983727316	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAGCTTCGTCTCTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	119545488	119472063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511311_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
transcript_37552.nnic	chr13	+	1815	12	NNC	ENSMUSG00000025451.16	novel	1731	11	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	141.098582265575	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTAGCTGGTTAGATG	NA	False	NA	109	True	AATAAA	-36	NA	119565413	119593927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_119565602_119565806_119565949_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
transcript_37556.known	chr13	+	1525	11	FSM	ENSMUSG00000025451.16	ENSMUST00000109203.9	1525	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	94.7694043454954	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTAGCTGGTTAGATG	NA	False	NA	109	True	AATAAA	-36	NA	119565136	119593927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_119565177_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
transcript_37560.known	chr13	+	2551	11	FSM	ENSMUSG00000025451.16	ENSMUST00000026520.14	2551	11	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	70.3985795311241	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTATCTTAAAGAATTTTT	NA	False	NA	46	True	AATAAA	-31	NA	119565457	119594754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_119565697_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
transcript_37563.known	chr13	+	1731	11	FSM	ENSMUSG00000025451.16	ENSMUST00000126957.9	1731	11	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	97.4055953218294	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGATTTTGAAATAAATGAA	NA	False	NA	75	True	AATAAA	-2	NA	119565668	119593893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_119565949_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
transcript_37568.nnic	chr13	+	2139	11	NNC	ENSMUSG00000025451.16	novel	1731	11	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	104.451376247515	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTAGCTGGTTAGATG	NA	False	NA	109	True	AATAAA	-36	NA	119565432	119593927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_+_119566087_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
transcript_37580.known	chr13	+	2627	14	FSM	ENSMUSG00000062822.9	ENSMUST00000225186.2	2627	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	45.7272593593877	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTCATTTCTTACATCA	NA	False	NA	12	True	AATAAA	-22	NA	119599307	119622656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_119599656_119601100_119601227_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_37584.known	chr13	+	2565	13	FSM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	23.5189049253763	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599303	119622653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_37585.known	chr13	+	2795	13	FSM	ENSMUSG00000062822.9	ENSMUST00000225726.2	2795	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	37.4584955502605	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599311	119622653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610731_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_37586.nic	chr13	+	2506	13	NIC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	-4	0	combination_of_known_junctions	TRUE	canonical	3	42	junction_1	29.2546292633035	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599299	119622653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_37600.known	chr13	+	978	4	FSM	ENSMUSG00000062822.9	ENSMUST00000224081.2	978	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	38.4389848403357	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACCAGATCTTGAAATCTA	NA	False	NA	-1	True	AATAAA	-15	NA	119599309	119606361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050
transcript_37603.known	chr13	+	1648	2	FSM	ENSMUSG00000074634.13	ENSMUST00000178948.2	1648	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTGTTTCTTTTGTT	NA	False	NA	NA	False	AATAAA	-32	NA	120068185	120071994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_120068567_120070727
transcript_37604.known	chr13	+	3464	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTTATGCCTGTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	120151999	120169796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
transcript_37610.nic	chr13	+	3530	11	NIC	ENSMUSG00000093930.3	novel	3464	11	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	216.614611695518	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151854	120169618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr13_+_120152050_120156425_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
transcript_37616.known	chr13	+	3245	10	FSM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	79.8526420630178	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151981	120169618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
transcript_37621.known	chr13	+	1747	4	FSM	ENSMUSG00000093930.3	ENSMUST00000226092.2	1747	4	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	113.247025960459	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	120151997	120163722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611
transcript_37624.known	chr13	-	4103	4	FSM	ENSMUSG00000095930.2	ENSMUST00000178142.2	4103	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	3.55902608401044	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTTGTGGTTCTGTTT	NA	False	NA	NA	False	GATAAA	-11	NA	120217418	120171629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_120174332_120175643_120175913_120189115_120190060_120217230
transcript_37627.known	chr13	-	2561	8	FSM	ENSMUSG00000094870.9	ENSMUST00000223813.2	2561	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_7	43.7488192260485	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	120252268	120227327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252040
transcript_37628.known	chr13	-	2966	8	FSM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	48.3110668861025	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGGTGTT	NA	False	NA	76	True	AGTAAA	-18	NA	120252342	120226722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
transcript_37636.known	chr13	-	3067	7	FSM	ENSMUSG00000094870.9	ENSMUST00000177916.8	3067	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	50.5426112854842	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGGTGTT	NA	False	NA	76	True	AGTAAA	-18	NA	120252341	120226722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
transcript_37638.known	chr13	-	3109	7	FSM	ENSMUSG00000094870.9	ENSMUST00000223722.2	3109	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_6	57.4207182895589	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTATGTGTATGGGTGT	NA	False	NA	75	True	AGTAAA	-17	NA	120252425	120226723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252355
transcript_3764.known	chr1	-	1003	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCTTTGGTTCTGCCCCT	2310	False	NA	-20	True	AATAAA	-24	NA	93729656	93720297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
transcript_37645.nic	chr13	-	514	5	ISM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	-34	11197	-34	-75	5prime_fragment	FALSE	canonical	3	32	junction_4	53.3479146733966	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTGCAGAAACTTCAAATG	NA	False	NA	NA	False	AAAAAG	-4	NA	120252376	120237919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr13_-_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
transcript_37647.nnic	chr13	-	846	5	NNC	ENSMUSG00000094870.9	novel	3067	7	NA	NA	-715	-75	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	64.5658578507248	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTGCAGAAACTTCAAATG	NA	False	NA	NA	False	AAAAAG	-4	NA	120253140	120237919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr13_-_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252746
transcript_37649.known	chr14	+	1523	6	FSM	ENSMUSG00000058317.13	ENSMUST00000150727.8	1523	6	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	30.1569229199532	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTCTGTACCAGCCTTT	NA	False	NA	7	True	AATAAA	-19	NA	3575919	3896119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_3576112_3581246_3581431_3598151_3598203_3839264_3839398_3882697_3882846_3895304
transcript_37651.known	chr14	+	1408	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	27.2073519475895	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCTGTGTTCATTTC	NA	False	NA	24	True	AATAAA	-21	NA	4137836	4186974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
transcript_37654.known	chr14	-	1199	5	FSM	ENSMUSG00000021772.16	ENSMUST00000022294.15	1199	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	46.4885738649832	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACCATGGGAACTCTT	NA	False	NA	-39	True	AATAAA	-14	NA	4198469	4189258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_4189750_4191150_4191393_4191594_4191853_4192889_4193001_4198372
transcript_37655.known	chr14	+	1922	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	0	0	0	0	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTTATCTTTTATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	4198628	4201873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
transcript_37657.known	chr14	+	883	4	FSM	ENSMUSG00000012405.17	ENSMUST00000079419.12	883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1636	junction_1	5972.09066315046	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198666	4200736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_4198874_4199235_4199418_4199652_4199790_4200379
transcript_37659.known	chr14	+	802	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	877	junction_1	6301.70655898508	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198725	4200736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
transcript_37661.known	chr14	-	619	4	FSM	ENSMUSG00000021772.16	ENSMUST00000133460.2	619	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	47.8493004709113	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTGGGAGGTGACAGT	NA	False	NA	NA	False	NA	NA	NA	4198510	4189653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_4189750_4191150_4191393_4192727_4192871_4198372
transcript_37662.known	chr14	-	4598	4	FSM	ENSMUSG00000021772.16	ENSMUST00000132374.9	4598	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	10.6144555520604	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTAGTCCCAATAAGATT	NA	False	NA	NA	False	AATAAA	-22	NA	4198560	4185692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_4189750_4191150_4191393_4192889_4193001_4198372
transcript_37666.known	chr14	-	747	2	FSM	ENSMUSG00000021772.16	ENSMUST00000152735.2	747	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTGCTACAGTATGACC	NA	False	NA	NA	False	CATAAA	-38	NA	4198492	4192373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_4193001_4198372
transcript_37668.known	chr14	+	4663	8	FSM	ENSMUSG00000021775.12	ENSMUST00000090543.6	4663	8	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	14.9229312653721	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGTTTTGTTCTCTG	NA	False	NA	28	True	TATAAA	-18	NA	4230568	4265642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_4230886_4247442_4247710_4249639_4249729_4252901_4253047_4254202_4254823_4257731_4257918_4261566_4261778_4262814
transcript_37670.known	chr14	+	3108	8	FSM	ENSMUSG00000017491.10	ENSMUST00000063750.8	3108	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.880630571852711	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGTGGGAGCTTTCACT	NA	False	NA	NA	False	AATAAA	-16	NA	5894219	6038924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_5894906_5921200_5921350_5960687_5960830_6025924_6026086_6032852_6033030_6034504_6034710_6035439_6035599_6037495
transcript_37671.known	chr14	-	10335	36	FSM	ENSMUSG00000017485.12	ENSMUST00000017629.12	10335	36	0	0	0	0	multi-exon	TRUE	canonical	3	144	junction_31	34.1687767724051	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATCTATTTCTTGAGTA	3843	False	NA	NA	False	AATAAA	-15	NA	6104584	6034300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_6039465_6040330_6040426_6041163_6041290_6044297_6044409_6045984_6046065_6046939_6047142_6048898_6049061_6049277_6049423_6051231_6051427_6052727_6052812_6053050_6053207_6055769_6055862_6056006_6056203_6056643_6056845_6057572_6057708_6059737_6059970_6060445_6060595_6060814_6060937_6062357_6062473_6062558_6062652_6062923_6063034_6069266_6069373_6069635_6069747_6070728_6070855_6070998_6071157_6071841_6071981_6074033_6074172_6074254_6074357_6076430_6076605_6079783_6079997_6081275_6081374_6082344_6082491_6083608_6083673_6085215_6085307_6086545_6086702_6104036
transcript_37677.nic	chr14	-	2502	16	ISM	ENSMUSG00000017485.12	ENSMUST00000017629.12	10335	36	-21	28622	-21	-9869	5prime_fragment	FALSE	canonical	3	144	junction_11	21.8780458196999	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGTATATTGTGAATAAAA	3822	False	NA	NA	False	NA	NA	NA	6104605	6062922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_6063034_6069266_6069373_6069635_6069747_6070728_6070855_6070998_6071157_6071841_6071981_6074033_6074172_6074254_6074357_6076430_6076605_6079783_6079997_6081275_6081374_6082344_6082491_6083608_6083673_6085215_6085307_6086545_6086702_6104036
transcript_37679.nic	chr14	-	2048	12	ISM	ENSMUSG00000017485.12	ENSMUST00000017629.12	10335	36	-21	36698	-21	5338	5prime_fragment	FALSE	canonical	3	144	junction_7	20.2892309504817	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTATTTATTCACATAG	3822	False	NA	NA	False	CATAAA	-4	NA	6104605	6070998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_6071157_6071841_6071981_6074033_6074172_6074254_6074357_6076430_6076605_6079783_6079997_6081275_6081374_6082344_6082491_6083608_6083673_6085215_6085307_6086545_6086702_6104036
transcript_37683.known	chr14	-	2935	12	FSM	ENSMUSG00000021785.9	ENSMUST00000022310.7	2935	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	12.9506373690434	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAGTGAAAGAGTAGCA	NA	False	NA	NA	False	AATAAA	-14	NA	6220483	6157836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_6158905_6159271_6159450_6175089_6175276_6178827_6178993_6186289_6186401_6187877_6188024_6188948_6189071_6191741_6191965_6199122_6199289_6208962_6209200_6215006_6215122_6220265
transcript_37688.known	chr14	-	2329	11	FSM	ENSMUSG00000021785.9	ENSMUST00000224656.2	2329	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	22.3660456943108	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATGCCTTTTCAGTGCT	NA	False	NA	-6	True	AATAAA	-15	NA	6220436	6158230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_6158905_6159271_6159450_6175089_6175276_6186289_6186401_6187877_6188024_6188948_6189071_6191741_6191965_6199122_6199289_6208962_6209200_6215006_6215122_6220265
transcript_37690.known	chr14	+	3434	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112625.9	3434	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAAATGTTGTAAGA	NA	False	NA	NA	False	TATAAA	-3	NA	6226431	6231076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_6226474_6226964_6227973_6228692
transcript_37694.known	chr14	-	8132	25	FSM	ENSMUSG00000021733.12	ENSMUST00000057015.8	8132	25	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_19	12.4782449576141	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCTTGGCTGTTGTTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	7767484	7669822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_7673687_7675705_7675814_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729849_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
transcript_37695.nic	chr14	-	3288	22	ISM	ENSMUSG00000021733.12	ENSMUST00000225630.3	3663	25	-86	9908	-32	0	5prime_fragment	FALSE	canonical	0	0	junction_16	22.9243060859824	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAGAGAAAGA	NA	False	NA	NA	False	AAAAAG	-13	NA	7766770	7683360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729888_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
transcript_37709.known	chr14	-	1614	12	FSM	ENSMUSG00000068758.9	ENSMUST00000090591.4	1614	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	9.46153587727832	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTCCTGTGCTGCTATC	NA	False	NA	-2	True	AATAAA	-16	NA	8123488	8114272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8122574_8122754_8123250
transcript_37710.nnic	chr14	-	1721	12	NNC	ENSMUSG00000068758.9	novel	1614	12	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_10	8.96273275917545	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8123376	8114269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8122574_8122970_8123250
transcript_37713.known	chr14	-	2315	11	FSM	ENSMUSG00000068758.9	ENSMUST00000224163.2	2315	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_10	8.68849814409832	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGAGCTACATAGACTGT	NA	False	NA	NA	False	AATAAA	-24	NA	8123171	8113751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8122574
transcript_37714.nnic	chr14	-	1332	11	NIC	ENSMUSG00000068758.9	novel	1614	12	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	9.8974744253269	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8123382	8114269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8123250
transcript_37728.known	chr14	+	1387	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	0	0	0	0	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	1603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTCTTAAACATACA	NA	False	NA	25	True	AATAAA	-27	NA	8348778	8357589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
transcript_37739.known	chr14	+	755	2	FSM	ENSMUSG00000021737.5	ENSMUST00000147471.2	755	2	0	0	0	0	multi-exon	FALSE	canonical	3	1151	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCTAGAGAGAAGAGGCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	8348829	8350130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_8349025_8349570
transcript_37740.known	chr14	-	6853	12	FSM	ENSMUSG00000021738.6	ENSMUST00000022257.4	6853	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_11	5.78399044384977	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTGGCTGCATGCGTT	NA	False	NA	NA	False	AATAAA	-20	NA	8457272	8362460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_8366457_8368861_8369829_8373447_8373570_8373864_8374064_8374161_8374407_8379653_8379737_8380307_8380568_8382230_8382481_8416739_8416845_8456107_8456177_8456393_8456691_8457012
transcript_37744.known	chr14	+	844	9	FSM	ENSMUSG00000053453.10	ENSMUST00000224015.2	844	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	279.504472236134	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACGGAAATGTATCCC	NA	False	NA	-84	True	NA	NA	NA	8508550	8520645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_8508579_8512131_8512210_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_37745.nic	chr14	+	1119	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	272.312292001298	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508473	8520749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_8508579_8512131_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_37746.nic	chr14	+	1078	8	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	-170	0	combination_of_known_junctions	TRUE	canonical	3	208	junction_2	184.198207352397	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508315	8520749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_8508579_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_37747.known	chr14	+	937	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	118.776758531907	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGTGCTCATTCAAAAC	NA	False	NA	22	True	AATAAA	-16	NA	8508485	8520751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_37749.nic	chr14	+	1134	8	NIC	ENSMUSG00000053453.10	novel	707	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	230.414976128918	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508603	8520749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_8508896_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_37754.nic	chr14	+	548	4	ISM	ENSMUSG00000053453.10	ENSMUST00000225202.2	741	8	-128	3318	-63	-319	5prime_fragment	FALSE	canonical	3	66	junction_1	319.376823760829	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTATGAAAAAATATACAAAG	NA	False	NA	8	True	AAAACA	-39	NA	8508422	8516326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_8508579_8512131_8512304_8515106_8515225_8516224
transcript_37756.nic	chr14	+	483	3	ISM	ENSMUSG00000053453.10	ENSMUST00000225317.2	706	5	-213	2496	-170	-319	5prime_fragment	FALSE	canonical	3	370	junction_1	187	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTATGAAAAAATATACAAAG	NA	False	NA	8	True	AAAACA	-39	NA	8508315	8516326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_8508579_8515106_8515225_8516224
transcript_37757.known	chr14	+	707	6	FSM	ENSMUSG00000053453.10	ENSMUST00000225590.2	707	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	264.30966686824	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGAGCATCTCTCACAT	NA	False	NA	NA	False	NA	NA	NA	8508602	8519420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_8508896_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397
transcript_37763.known	chr14	-	1010	6	FSM	ENSMUSG00000033111.17	ENSMUST00000223927.2	1010	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	68.9770976484224	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCCTCCAAGTCCTTA	NA	False	NA	NA	False	AATAGA	-24	NA	10185509	10168029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_10168616_10169980_10170042_10172106_10172182_10182369_10182494_10184294_10184379_10185429
transcript_37764.known	chr14	-	2477	6	FSM	ENSMUSG00000033111.17	ENSMUST00000112669.10	2477	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	65.4785461048121	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAGGTGTTTAAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	10185554	10166531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_10168616_10169980_10170042_10172106_10172182_10182369_10182494_10184294_10184379_10185505
transcript_37765.known	chr14	-	900	6	FSM	ENSMUSG00000033111.17	ENSMUST00000223702.2	900	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	60.3277713826725	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGAGTCTCCAGTT	NA	False	NA	-3	True	AATAAA	-23	NA	10185528	10167778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10185429
transcript_37766.known	chr14	-	809	6	FSM	ENSMUSG00000033111.17	ENSMUST00000225971.2	809	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	59.9513135802711	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCACGGCCCTCTTGAGTC	NA	False	NA	-10	True	AATAAA	-16	NA	10185520	10167785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10185505
transcript_37769.known	chr14	-	1191	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	54.4196655631032	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	10185505	10167783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
transcript_3777.known	chr1	-	1055	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	0	0	0	multi-exon	FALSE	canonical	3	2511	junction_1	0	1012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCCGGCTTGTTTTGTTT	2338	False	NA	NA	False	NA	NA	NA	93729628	93727786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_93728633_93729419
transcript_37770.known	chr14	-	2292	5	FSM	ENSMUSG00000033111.17	ENSMUST00000223762.2	2292	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	58.5683361552981	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTCAGAAAAAGCTTTGT	NA	False	NA	-8	True	ATTAAA	-45	NA	10185541	10166639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185505
transcript_3778.known	chr1	+	4533	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACATTTGAAAGTAGA	NA	False	NA	NA	False	AATAAA	-12	NA	93731686	93749817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
transcript_37784.known	chr14	-	431	4	FSM	ENSMUSG00000033111.17	ENSMUST00000225383.2	431	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	60.8988231960739	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTTTCATTTTGTTA	NA	False	NA	NA	False	TATAAA	-30	NA	10185536	10168414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10185505
transcript_37785.known	chr14	-	915	1	FSM	ENSMUSG00000033111.17	ENSMUST00000223697.2	915	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	10185462	10184547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_10184500_10185500
transcript_37788.nnic	chr14	-	4744	27	Antisense	novelGene_ENSMUSG00000114246.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	50	junction_26	12.5460099977605	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGTGGACAGTGTGTGT	NA	False	NA	1	True	AATAAA	-31	NA	10517058	10231198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr14_-_10232037_10232598_10232735_10243308_10243452_10244146_10244294_10249042_10249172_10249677_10249755_10250730_10250825_10253754_10253902_10254439_10254576_10255956_10256130_10258043_10258179_10259088_10259224_10259412_10259496_10262382_10262480_10269949_10270042_10278989_10279082_10302885_10303019_10315336_10316106_10317697_10317748_10324278_10324388_10327194_10327380_10347592_10347786_10359629_10359788_10378281_10378349_10432326_10432423_10507040_10507190_10516877
transcript_37793.nnic	chr14	-	2348	14	Antisense	novelGene_ENSMUSG00000114246.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	50	junction_13	9.32198521153213	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATACATCAACATTTTAG	NA	False	NA	NA	False	NA	NA	NA	10517058	10262405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr14_-_10262480_10269949_10270042_10278989_10279082_10302885_10303019_10315336_10316106_10317697_10317748_10324278_10324388_10327194_10327380_10347592_10347786_10359629_10359788_10378281_10378349_10432326_10432423_10507040_10507190_10516877
transcript_37796.known	chr14	+	336	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGACAGCAAAAGGAAAAATA	NA	False	NA	NA	False	NA	NA	NA	13669437	13669773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_13669400_13669800
transcript_378.known	chr1	+	2553	15	FSM	ENSMUSG00000046101.17	ENSMUST00000171802.8	2553	15	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_12	9.43857694220254	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGGTAAATGTATGATT	NA	False	NA	NA	False	NA	NA	NA	9978862	10011179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_9978916_9981899_9982038_9982134_9982266_9982338_9982399_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9994281_9994488_10001005_10001173_10002226_10002407_10004147_10004291_10007220_10007331_10010602
transcript_37809.known	chr14	+	2681	16	FSM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_15	21.4813614300605	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTGCTTCCTTTTGTTC	NA	False	NA	14	True	AATAAA	-14	NA	13803532	14038581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360_13996423_14026822_14026918_14038054
transcript_37824.nic	chr14	+	2870	14	ISM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	-50	41398	-50	29831	5prime_fragment	FALSE	canonical	3	123	junction_12	20.0638035531091	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCACTTGTTAACATAATT	NA	False	NA	NA	False	ATTAAA	-18	NA	13803482	13997183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360
transcript_37826.known	chr14	+	2390	13	FSM	ENSMUSG00000021747.13	ENSMUST00000225744.2	2390	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	45.7574371611387	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGACTTGTCAAAACTTG	NA	False	NA	NA	False	AATAAA	-21	NA	13803533	13967352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13966754
transcript_37828.nic	chr14	+	2333	12	ISM	ENSMUSG00000021747.13	ENSMUST00000225744.2	2390	13	-51	7951	-50	-7951	5prime_fragment	FALSE	canonical	3	126	junction_9	19.2418277168334	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCATGAATTAGAATTGG	NA	False	NA	NA	False	ATTAAA	-12	NA	13803482	13959401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579
transcript_37833.nnic	chr14	+	2678	4	NNC	ENSMUSG00000021747.13	novel	2390	13	NA	NA	-9	-147680	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	75.7011668778406	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGTTTTAAGTTTTTAT	NA	False	NA	NA	False	AATAAA	-8	NA	13803523	13819672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_13803796_13807424_13807515_13810290_13810385_13817450
transcript_37835.nic	chr14	+	970	4	ISM	ENSMUSG00000021747.13	ENSMUST00000225744.2	2390	13	-33	141558	-32	-141558	5prime_fragment	FALSE	canonical	3	157	junction_2	15.5134350376268	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTTAGTCAGTTGAAC	NA	False	NA	NA	False	NA	NA	NA	13803500	13825794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303
transcript_37839.nnic	chr14	-	3414	3	NNC	ENSMUSG00000021752.15	novel	1650	3	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	103.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGGTTGTATTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	14255631	14246209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_14247587_14249552_14249623_14253664
transcript_37841.known	chr14	-	1650	3	FSM	ENSMUSG00000021752.15	ENSMUST00000022272.14	1650	3	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	7.5	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGGTTGTATTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	14255633	14246209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_14247587_14249552_14249623_14255430
transcript_37842.known	chr14	+	2377	1	FSM	ENSMUSG00000021748.10	ENSMUST00000225735.2	2377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAGGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	14296810	14299187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_14296800_14299200
transcript_37843.known	chr14	+	1513	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	0	0	0	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	AATAAA	-16	NA	14296747	14303777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
transcript_37847.known	chr14	-	2812	18	FSM	ENSMUSG00000033885.16	ENSMUST00000036682.9	2812	18	0	0	0	0	multi-exon	TRUE	canonical	3	68	junction_2	18.5091392369855	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTAGCTTTGCTAGGTA	NA	False	NA	0	True	AATAAA	-17	NA	14371562	14304655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_14305839_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
transcript_37849.known	chr14	-	2765	18	FSM	ENSMUSG00000033885.16	ENSMUST00000225653.2	2765	18	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	21.2781870861862	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATGTTGTAGCTTTGC	NA	False	NA	-6	True	AATAAA	-11	NA	14371518	14304661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_14305839_14314427_14314491_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
transcript_3785.nic	chr1	+	480	4	ISM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	-54	9577	-54	-5864	5prime_fragment	FALSE	canonical	3	212	junction_1	3.29983164553722	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGTTGGCTGCCATTCTG	NA	False	NA	NA	False	NA	NA	NA	93731632	93740240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128
transcript_37857.known	chr14	-	2121	11	FSM	ENSMUSG00000033885.16	ENSMUST00000225616.2	2121	11	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	16.2283702200806	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	14371521	14324105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
transcript_37864.known	chr14	-	2401	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTGTATATACCTT	NA	False	NA	-15	True	NA	NA	NA	14389406	14377938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
transcript_37876.known	chr14	-	2226	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGGCAACACCCAGGTA	NA	False	NA	NA	False	AATAAA	-13	NA	14466871	14413009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
transcript_3788.known	chr1	+	3232	10	FSM	ENSMUSG00000073609.10	ENSMUST00000097633.10	3232	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	12.154357040244	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCTCCACACATTTAGT	NA	False	NA	NA	False	CATAAA	-27	NA	93752961	93780070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93753042_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
transcript_37880.known	chr14	-	1958	8	FSM	ENSMUSG00000025277.15	ENSMUST00000225234.2	1958	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	23.7589940005541	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGTGAATTCAGTGAA	NA	False	NA	NA	False	AGTAAA	-18	NA	14466854	14413107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14466809
transcript_37883.known	chr14	-	676	2	FSM	ENSMUSG00000109649.2	ENSMUST00000211339.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGACTTGGAAAAGGCCTC	NA	False	NA	NA	False	NA	NA	NA	14512485	14509136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_14509256_14511928
transcript_37884.known	chr14	-	9100	46	FSM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_16	125.273027256567	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	AATAAA	-17	NA	14651816	14518184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547026_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
transcript_37890.nic	chr14	-	3448	18	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	-6	54531	-6	9515	5prime_fragment	FALSE	canonical	3	255	junction_12	33.849964094577	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTTTTCTGTACAAGTTT	NA	False	NA	NA	False	AATAAA	-12	NA	14651822	14572715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
transcript_37905.known	chr14	+	984	5	FSM	ENSMUSG00000094021.8	ENSMUST00000169215.8	984	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	8	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGTCAGAAAACACAGCAG	NA	False	NA	NA	False	AATAAA	-3	NA	15424802	15433238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_15424996_15425726_15425890_15426844_15426977_15427652_15427837_15432926
transcript_37909.nnic	chr14	+	2335	8	NNC	ENSMUSG00000096904.8	novel	1745	5	NA	NA	-14861	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9.16292440618547	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	16042429	16063946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_16042755_16044129_16044244_16047431_16047583_16057290_16057426_16058159_16058323_16059272_16059405_16060080_16060263_16062813
transcript_3792.known	chr1	+	3459	10	FSM	ENSMUSG00000073609.10	ENSMUST00000112881.8	3459	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	13.9761701954911	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCTCCACACATTTAGT	NA	False	NA	NA	False	CATAAA	-27	NA	93752995	93780070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_93753303_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
transcript_3793.nnic	chr1	+	2902	10	NNC	ENSMUSG00000073609.10	novel	3232	10	NA	NA	-1	-314	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	13.736497298245	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCAGCTTACCTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	93752960	93779756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_93753042_93754023_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
transcript_37931.nnic	chr14	-	2119	8	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.38505138783324	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137159	19114973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19122451_19122587_19132241_19132393_19135569_19135684_19137061
transcript_37934.nnic	chr14	-	2203	7	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-232	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.46249406456535	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137378	19114973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19132241_19132393_19135569_19135684_19137061
transcript_37938.nnic	chr14	-	2064	5	NIC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-358	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.6393596310755	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137504	19114973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19137061
transcript_37948.known	chr14	+	4876	21	FSM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	0	0	0	0	multi-exon	FALSE	canonical	3	1309	junction_14	132.834897523204	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	24	True	AATAAA	-16	NA	19801332	19861855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
transcript_37965.known	chr14	+	3976	17	FSM	ENSMUSG00000021806.5	ENSMUST00000225791.2	3976	17	0	0	0	0	multi-exon	FALSE	canonical	3	1309	junction_14	123.598391979831	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATGTAGACCCGCTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	19801351	19856198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910
transcript_37980.known	chr14	-	1562	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	1714	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATATACTTGAGTCTC	1688	False	NA	NA	False	AGTAAA	-19	NA	19873892	19861418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
transcript_37997.known	chr14	-	960	5	FSM	ENSMUSG00000043004.14	ENSMUST00000159073.8	960	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	48.2312139594267	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTATGAGAATGAAAGCTG	NA	False	NA	NA	False	AAGAAA	-6	NA	20027695	19925722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027025_20027066_20027213
transcript_37998.known	chr14	-	3826	4	FSM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	22.3755819291179	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTACGGGGTCACTTTC	NA	False	NA	-4	True	AATAAA	-18	NA	20027317	19922626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027025
transcript_37999.known	chr14	-	393	4	FSM	ENSMUSG00000043004.14	ENSMUST00000162425.8	393	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	56.5115524079418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCTTTCTCGTCCACAGC	NA	False	NA	NA	False	GGGGCT	-36	NA	20027252	19925806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027213
transcript_38.known	ERCC-00111	+	978	1	FSM	ERCC-00111A	DQ883685	978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	180	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00111_+_0_1000
transcript_38004.known	chr14	-	458	3	FSM	ENSMUSG00000043004.14	ENSMUST00000159028.8	458	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	62	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGACACTCCGGGCTG	NA	False	NA	NA	False	TTTAAA	-17	NA	20027127	19925763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_19926004_19941353_19941470_20027025
transcript_38005.known	chr14	-	2315	2	FSM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTCCTTCAGTGGTTTT	5305	False	NA	NA	False	AATAAA	-41	NA	20133251	20125703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20127713_20132945
transcript_38007.nnic	chr14	-	3320	6	NNC	ENSMUSG00000023243.10	novel	3392	5	NA	NA	-42	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	47.4484983956289	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTGGTGTGTGGTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	20231919	20190127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_20191544_20191654_20192526_20194702_20194872_20195023_20195191_20196568_20196681_20231334
transcript_38008.nnic	chr14	-	3230	5	NNC	ENSMUSG00000023243.10	novel	3392	5	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	53.0394900050896	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGGTATGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	20231919	20190124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_20192526_20194702_20194872_20195023_20195051_20196632_20196681_20231334
transcript_38009.known	chr14	-	3392	5	FSM	ENSMUSG00000023243.10	ENSMUST00000024011.10	3392	5	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	12.5573683548744	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGGTATGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	20231877	20190124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20192526_20194702_20194872_20195023_20195191_20196568_20196681_20231334
transcript_38012.known	chr14	-	916	5	FSM	ENSMUSG00000023387.9	ENSMUST00000024155.9	916	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCAAGTGTCCTGACCTC	NA	False	NA	NA	False	NA	NA	NA	20319267	20312823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20313042_20313316_20313483_20314227_20314395_20315233_20315349_20319017
transcript_38021.known	chr14	+	2494	9	FSM	ENSMUSG00000021809.11	ENSMUST00000022343.6	2494	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.70809924354783	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGACTCTTTTCTTCTCC	NA	False	NA	NA	False	ATTAAA	-15	NA	20344789	20367646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20344861_20350654_20350748_20354020_20354161_20356299_20356435_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
transcript_38029.known	chr14	-	3132	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	0	0	0	0	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGCTTCCTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	20398189	20369919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
transcript_3803.known	chr1	+	2112	3	FSM	ENSMUSG00000051185.10	ENSMUST00000059975.8	2112	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	1	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGCGTTCTAGTTGCC	NA	False	NA	NA	False	AATAAA	-20	NA	95241347	95263009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_95241976_95252833_95252969_95261660
transcript_38055.known	chr14	+	2151	14	FSM	ENSMUSG00000039599.17	ENSMUST00000225942.2	2151	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	90.1241746919511	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGCTCATGTTGTCTG	NA	False	NA	NA	False	AGTAAA	-40	NA	20398289	20433344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431820_20431890_20432984
transcript_38057.nic	chr14	+	2266	13	NIC	ENSMUSG00000039599.17	novel	2370	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_8	86.9643924578074	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTCTTTATTACATTTTA	NA	False	NA	9	True	AATAAA	-18	NA	20398229	20433557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431816_20431890_20432984
transcript_38059.known	chr14	+	1981	12	FSM	ENSMUSG00000039599.17	ENSMUST00000051915.7	1981	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	91.4343914174765	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTCTTTATTACATTTTA	NA	False	NA	9	True	AATAAA	-18	NA	20398289	20433557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20424397_20424523_20425577_20425682_20428467_20428592_20428831_20428952_20431816_20431890_20432984
transcript_3806.nnic	chr1	+	504	2	Genic_Genomic	ENSMUSG00000081051.5	novel	531	1	NA	NA	-37	62	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATGGAACCAAGACATTAG	NA	False	NA	NA	False	NA	NA	NA	95426308	95426938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr1_+_95426544_95426669
transcript_38063.nic	chr14	+	2102	9	ISM	ENSMUSG00000039599.17	ENSMUST00000225942.2	2151	14	-60	6874	0	115	5prime_fragment	FALSE	canonical	3	87	junction_7	68.9373583407429	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGTACTTGTCCATGTG	NA	False	NA	NA	False	AATAAA	-22	NA	20398229	20426470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577
transcript_38066.known	chr14	+	4483	8	FSM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_7	47.5106862308097	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGACAGTTATTCATTCT	NA	False	NA	NA	False	NA	NA	NA	20398327	20421410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20417913
transcript_38067.known	chr14	+	1686	8	FSM	ENSMUSG00000039599.17	ENSMUST00000224079.2	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	92.3493809576724	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCTGGCTCACAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	20398342	20426355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20424397_20424523_20425577
transcript_3807.known	chr1	+	531	1	FSM	ENSMUSG00000081051.5	ENSMUST00000117288.2	531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8233	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	False	NA	NA	False	NA	NA	NA	95426345	95426876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_95426300_95426900
transcript_38070.nic	chr14	+	2873	7	ISM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	-98	6103	0	-5	5prime_fragment	FALSE	canonical	3	175	junction_5	36.4771618047969	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACAGCACCAGTTAAATG	NA	False	NA	2	True	NA	NA	NA	20398229	20415307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330
transcript_38071.nic	chr14	+	1639	7	NIC	ENSMUSG00000039599.17	novel	4483	8	NA	NA	0	495	combination_of_known_junctions	FALSE	canonical	3	59	junction_5	78.3207436691512	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCTGAATATGTTCTTTA	NA	False	NA	12	True	NA	NA	NA	20398229	20418630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20417913
transcript_38075.known	chr14	-	1631	5	FSM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	0	0	0	0	multi-exon	TRUE	canonical	3	896	junction_2	62.1711347813437	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTATGTGTTTTGAAC	NA	False	NA	NA	False	ATTAAA	-23	NA	20438978	20434705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438509_20438671
transcript_38077.known	chr14	-	1164	3	FSM	ENSMUSG00000021811.8	ENSMUST00000223950.2	1164	3	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_1	10.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20438944	20437529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20438280_20438367_20438509_20438671
transcript_3808.known	chr1	-	4908	13	FSM	ENSMUSG00000040693.8	ENSMUST00000071985.6	4908	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	6.53781733880318	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTTTATTACTCTTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	96799896	96743994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_96746833_96748907_96749046_96751421_96751487_96756515_96756701_96759710_96759865_96764604_96764801_96765178_96765324_96766891_96767011_96768854_96768977_96770178_96770276_96772200_96772381_96795449_96795714_96799491
transcript_38081.known	chr14	-	801	3	FSM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	790	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTCCTCTGGCATAG	8678	False	NA	-36	True	AATAAA	-14	NA	20443551	20441294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20441529_20441960_20442222_20443245
transcript_38082.known	chr14	-	2572	3	FSM	ENSMUSG00000049960.5	ENSMUST00000061444.5	2572	3	0	0	0	0	multi-exon	TRUE	canonical	3	1591	junction_2	40	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTCCCAGTTTTCCT	8527	False	NA	NA	False	AAAACA	-24	NA	20443702	20439371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20441529_20441960_20442222_20443548
transcript_38084.known	chr14	-	2904	14	FSM	ENSMUSG00000021814.18	ENSMUST00000100844.6	2904	14	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	337.357184335068	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATTTGTATGTTTTTTT	7990	False	NA	15	True	AATAAA	-40	NA	20530189	20505328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517525_20517592_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
transcript_38088.known	chr14	-	2727	13	FSM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_12	241.43268845696	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTTTTGACCTAGAGTA	8200	False	NA	-1	True	AATAAA	-24	NA	20529979	20505344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
transcript_38089.known	chr14	-	2851	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTTGTATGTTTTTTTT	7978	False	NA	16	True	AATAAA	-41	NA	20530201	20505327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
transcript_38107.known	chr14	-	6580	21	FSM	ENSMUSG00000034235.18	ENSMUST00000022356.12	6580	21	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_20	12.721929885045	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTGTCTTTTACTTTTG	NA	False	NA	2	True	AATAAA	-23	NA	20691131	20598979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20600529_20602141_20602329_20606314_20606434_20610913_20612311_20614935_20615132_20616010_20616131_20620315_20620484_20623835_20623970_20626540_20626773_20627002_20627381_20627522_20627655_20633389_20633559_20636067_20636218_20638142_20638290_20638400_20638507_20639251_20639335_20639441_20639556_20641546_20641682_20654119_20654213_20657149_20657974_20690984
transcript_38108.known	chr14	-	3298	14	FSM	ENSMUSG00000021816.12	ENSMUST00000161445.8	3298	14	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	49.8631262652749	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTCAACTTTTGTTATA	NA	False	NA	NA	False	CATAAA	-10	NA	20596615	20549935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20551731_20553314_20553345_20558691_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
transcript_38109.known	chr14	-	3831	14	FSM	ENSMUSG00000021816.12	ENSMUST00000159027.8	3831	14	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	50.211858850582	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCTGTCTCTAAAATTAC	NA	False	NA	-2	True	ATTAAA	-16	NA	20596641	20549431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20551731_20553314_20553345_20558691_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
transcript_38115.known	chr14	-	3074	13	FSM	ENSMUSG00000021816.12	ENSMUST00000022355.11	3074	13	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	56.1047507396259	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGTGTTGGGTTTTAT	NA	False	NA	-1	True	AATAAA	-25	NA	20596580	20550097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20551731_20558691_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
transcript_38118.nic	chr14	-	2477	12	ISM	ENSMUSG00000021816.12	ENSMUST00000161445.8	3298	14	-51	7803	-25	0	5prime_fragment	FALSE	canonical	3	105	junction_2	32.0745515869534	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTAATCTGGCTCGTT	NA	False	NA	-7	True	AATAAA	-19	NA	20596666	20557738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
transcript_3812.known	chr1	+	410	3	FSM	ENSMUSG00000097814.6	ENSMUST00000202118.2	410	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTCCTACCAGCTGGTG	NA	False	NA	NA	False	NA	NA	NA	96799957	96805626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_96800116_96800209_96800394_96805558
transcript_38120.known	chr14	-	2322	12	FSM	ENSMUSG00000021816.12	ENSMUST00000161989.2	2322	12	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	32.8535442821749	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTAATCTGGCTCGTT	NA	False	NA	-7	True	AATAAA	-19	NA	20596508	20557738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727_20581929_20596423
transcript_38126.known	chr14	+	4196	24	FSM	ENSMUSG00000039367.12	ENSMUST00000223751.2	4196	24	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_4	106.764674177248	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTCATTACTCGCG	NA	False	NA	13	True	AATAAA	-16	NA	20724410	20744918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732844_20733376_20733531_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
transcript_38127.nic	chr14	+	4563	24	NIC	ENSMUSG00000039367.12	novel	4196	24	NA	NA	-35	0	intron_retention	FALSE	canonical	3	56	junction_6	85.7457665656559	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTCATTACTCGCG	NA	False	NA	13	True	AATAAA	-16	NA	20724340	20744918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
transcript_38131.known	chr14	+	4461	23	FSM	ENSMUSG00000039367.12	ENSMUST00000048657.10	4461	23	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_9	29.806850674089	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCTCATTACTCGCGAC	NA	False	NA	15	True	AATAAA	-18	NA	20724375	20744920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
transcript_38147.known	chr14	+	4163	3	FSM	ENSMUSG00000039357.3	ENSMUST00000048016.3	4163	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTTCTTTATTACATT	NA	False	NA	NA	False	AATAAA	-23	NA	20745035	20751084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20745767_20745855_20746482_20748278
transcript_3815.known	chr1	+	3849	2	FSM	ENSMUSG00000097814.6	ENSMUST00000181489.3	3849	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAATCATCTCTATTATTT	NA	False	NA	5	True	NA	NA	NA	96799945	96808959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_96800394_96805558
transcript_38151.known	chr14	+	578	3	FSM	ENSMUSG00000063787.5	ENSMUST00000226072.2	578	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	962	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753125	20754493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20753266_20753343_20753477_20754188
transcript_38153.known	chr14	-	1554	3	FSM	ENSMUSG00000097577.3	ENSMUST00000180987.2	1554	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTAGGCTCTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	20753080	20737303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20738682_20738832_20738908_20752979
transcript_38155.known	chr14	+	3422	2	FSM	ENSMUSG00000039357.3	ENSMUST00000225804.2	3422	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAAAAAAGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	20745044	20750263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20746482_20748278
transcript_3816.known	chr1	-	3495	3	FSM	ENSMUSG00000044768.17	ENSMUST00000153115.8	3495	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTCGTGGTGTTTTA	NA	False	NA	-1	True	AATAAA	-18	NA	97589401	97571627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_97574087_97582324_97582415_97588455
transcript_38160.known	chr14	+	557	2	FSM	ENSMUSG00000063787.5	ENSMUST00000224633.2	557	2	0	0	0	0	multi-exon	FALSE	canonical	3	2056	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAGTTGGCCATTTCTT	NA	False	NA	27	True	AATAAA	-10	NA	20753218	20754487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20753477_20754188
transcript_38162.known	chr14	+	6073	26	FSM	ENSMUSG00000021819.12	ENSMUST00000022358.9	6073	26	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_9	13.1390106172421	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGGGTCTTTGCCTTC	NA	False	NA	17	True	TATAAA	-25	NA	20757619	20773687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20758125_20760704_20760859_20761095_20761191_20761525_20761699_20761858_20761967_20762104_20762187_20762309_20762431_20763043_20763246_20763397_20763574_20763950_20764936_20766019_20766152_20766289_20766470_20766566_20766751_20766977_20767077_20767935_20768061_20768494_20768736_20768827_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
transcript_38170.nic	chr14	+	3743	9	ISM	ENSMUSG00000021819.12	ENSMUST00000022358.9	6073	26	-5	7992	-5	16	intron_retention	FALSE	canonical	3	25	junction_2	3.90512483795333	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTCTCTTAGCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	20757614	20765695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_20758125_20760704_20760859_20761095_20761191_20761525_20761699_20761858_20761967_20762104_20762187_20762309_20762431_20763043_20763246_20763397
transcript_38174.nic	chr14	-	3624	15	NIC	ENSMUSG00000039308.7	novel	3907	15	NA	NA	208	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_10	18.1518537873785	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGCTTCATTGC	9631	False	NA	-1	True	AATAAA	-15	NA	20784422	20773797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_20774429_20774528_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778255_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
transcript_38175.known	chr14	-	3907	15	FSM	ENSMUSG00000039308.7	ENSMUST00000223679.2	3907	15	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	9.23281636117516	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGCTTCATTGC	9423	False	NA	-1	True	AATAAA	-15	NA	20784630	20773797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20774429_20774528_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
transcript_38177.nic	chr14	-	3652	15	NIC	ENSMUSG00000039308.7	novel	3907	15	NA	NA	218	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_2	16.2331545339299	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGCTTCATTGC	9641	False	NA	-1	True	AATAAA	-15	NA	20784412	20773797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_20774429_20774528_20774632_20774815_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
transcript_3818.known	chr1	-	40378	3	FSM	ENSMUSG00000044768.17	ENSMUST00000053033.14	40378	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	5.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACATTTTTCTTTTTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	97589799	97534042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_97574087_97582324_97582415_97589555
transcript_38188.known	chr14	-	3604	20	FSM	ENSMUSG00000021820.19	ENSMUST00000080440.14	3604	20	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	9.18507762457831	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCCATTGTGTTATT	NA	False	NA	-8	True	AATAAA	-10	NA	20844098	20784950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
transcript_38189.nic	chr14	-	1966	20	NIC	ENSMUSG00000021820.19	novel	1937	22	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	10.4229131778775	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATTGTTTAAAAAAACGGAA	NA	False	NA	NA	False	NA	NA	NA	20844159	20786694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20791445_20791560_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
transcript_38191.known	chr14	-	3564	19	FSM	ENSMUSG00000021820.19	ENSMUST00000100837.11	3564	19	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	6.2610396328366	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTTATTGCTGTTGG	NA	False	NA	0	True	AATAAA	-18	NA	20844119	20784942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
transcript_38202.known	chr14	+	449	2	FSM	ENSMUSG00000114241.2	ENSMUST00000224276.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAGCCTCCATTTTTCTT	1068	False	NA	NA	False	AATAAA	-25	NA	20844306	20846628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20844529_20846401
transcript_38203.known	chr14	+	2342	11	FSM	ENSMUSG00000021822.4	ENSMUST00000022368.4	2342	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.66332495807108	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTCTGGTTTCTCCATG	NA	False	NA	NA	False	AATAAA	-14	NA	20886727	20893453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20886803_20887116_20887204_20887677_20887709_20887845_20887954_20888580_20888756_20889163_20889256_20889399_20889623_20889842_20889992_20890565_20890707_20891013_20891163_20892341
transcript_38204.known	chr14	+	5267	21	FSM	ENSMUSG00000021823.11	ENSMUST00000022369.9	5267	21	0	0	0	0	multi-exon	TRUE	canonical	3	265	junction_11	15.7968351260624	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAATTGAGGTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	20979465	21083744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_20979757_21017605_21017677_21032641_21032793_21033435_21033545_21035694_21035818_21037025_21037187_21045079_21045171_21045912_21046061_21051198_21051353_21053162_21053339_21057181_21057373_21058928_21059129_21060105_21060235_21064978_21065129_21069347_21069457_21070546_21070850_21072070_21072196_21074173_21074360_21079243_21079448_21079849_21079955_21081654
transcript_38209.known	chr14	-	6732	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAATGACTGCACTGTGT	NA	False	NA	NA	False	CATAAA	-29	NA	21102518	21081509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
transcript_38210.nic	chr14	-	3151	9	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-41	1207	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	95.1609656056516	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	-8	True	AATAAA	-17	NA	21102617	21084874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102522
transcript_38211.known	chr14	-	1770	9	FSM	ENSMUSG00000021824.14	ENSMUST00000022371.10	1770	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	105.050880529389	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTATTATATTTTTTATAAA	NA	False	NA	NA	False	NA	NA	NA	21102290	21086081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094882_21094893_21095555_21095832_21102207
transcript_38217.nic	chr14	-	2529	9	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-362	264	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	95.1609656056516	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCATTCTCATGTTT	NA	False	NA	4	True	ATTAAA	-27	NA	21102938	21085817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102522
transcript_38225.known	chr14	-	764	6	FSM	ENSMUSG00000021824.14	ENSMUST00000224016.2	764	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	125.62420149	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAGTGTCATTGCAATT	NA	False	NA	NA	False	NA	NA	NA	21102263	21086636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21102207
transcript_38227.known	chr14	+	1782	11	FSM	ENSMUSG00000039197.11	ENSMUST00000045376.11	1782	11	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_9	34.7499640287584	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTCTGTCTTGCTTG	NA	False	NA	16	True	AATAAA	-19	NA	21102641	21498637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
transcript_38228.known	chr14	+	1818	11	FSM	ENSMUSG00000039197.11	ENSMUST00000224069.2	1818	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	100.003199948802	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGATTTTTTTTCTGTC	NA	False	NA	9	True	AATAAA	-12	NA	21126219	21498630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_21126390_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
transcript_3823.nnic	chr1	-	5575	29	NIC	ENSMUSG00000040648.16	novel	6239	31	NA	NA	314	-113	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	63.8298419588345	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGACTTGAATTTAAAGC	9148	False	NA	-35	True	ATTAAA	-17	NA	97697822	97633885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_97635556_97639447_97639574_97640728_97640870_97645166_97645287_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
transcript_38231.nic	chr14	+	1018	8	NIC	ENSMUSG00000039197.11	novel	1782	11	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	129.691313258421	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTCTTCCCAACTA	NA	False	NA	NA	False	ATTAAA	-16	NA	21102613	21376861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21376659
transcript_38236.known	chr14	+	4243	3	FSM	ENSMUSG00000039197.11	ENSMUST00000223861.2	4243	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_2	17.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATGAGGTAATTCCTTT	NA	False	NA	NA	False	NA	NA	NA	21102678	21157965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_21102769_21142434_21142510_21153887
transcript_38237.known	chr14	+	289	2	FSM	ENSMUSG00000039197.11	ENSMUST00000223558.2	289	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATGATGATCCATTTTA	NA	False	NA	4	True	AATAAA	-15	NA	21102678	21103988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_21102769_21103789
transcript_38239.nic	chr14	+	3544	17	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-4	-2121	combination_of_known_junctions	FALSE	canonical	3	97	junction_7	37.2808177887771	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGAGAAGAACAGGAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	21531497	21718820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
transcript_38246.known	chr14	+	6977	17	FSM	ENSMUSG00000021767.20	ENSMUST00000182405.9	6977	17	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	51.5338177801723	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCGTGTCCTGTCATG	NA	False	NA	10	True	AATAAA	-20	NA	21549852	21722201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_21550029_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
transcript_3825.known	chr1	-	5882	28	FSM	ENSMUSG00000040648.16	ENSMUST00000042509.13	5882	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	45.2326708589218	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACATAGCAGTGTATTG	8834	False	NA	78	True	AATAAA	-15	NA	97698136	97633772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_97635556_97639447_97639574_97640728_97640870_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
transcript_38255.nic	chr14	+	2620	15	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-4	-8617	combination_of_known_junctions	FALSE	canonical	3	97	junction_7	36.2362570712072	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAGAATAAGTACCTGCA	NA	False	NA	NA	False	NA	NA	NA	21531497	21712324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225
transcript_38256.nic	chr14	+	2713	15	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-4	-8524	combination_of_known_junctions	FALSE	canonical	3	97	junction_7	36.2362570712072	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAGGAGGAGGAGGAGGA	NA	False	NA	NA	False	NA	NA	NA	21531497	21712417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225
transcript_38258.nic	chr14	+	2947	15	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-4	-8617	combination_of_known_junctions	FALSE	canonical	3	25	junction_7	46.9181332161649	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAGAATAAGTACCTGCA	NA	False	NA	NA	False	NA	NA	NA	21531497	21712324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21675284_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225
transcript_38271.nic	chr14	+	1327	6	NIC	ENSMUSG00000021767.20	novel	535	6	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	106	junction_5	10.1113797278116	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGACCAAAGAAAAAGGGAAG	NA	False	NA	NA	False	NA	NA	NA	21531497	21672045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022
transcript_38272.nic	chr14	+	1420	6	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-4	93	combination_of_known_junctions	FALSE	canonical	3	106	junction_5	10.1113797278116	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGCAACGATTGTTGTA	NA	False	NA	NA	False	AATAAA	-41	NA	21531497	21672138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022
transcript_38275.nic	chr14	+	1053	3	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-4	-10796	combination_of_known_junctions	FALSE	canonical	3	107	junction_1	11.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCGTGAAAAGAAACCAGAAG	NA	False	NA	NA	False	ACTAAA	-9	NA	21531497	21659877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_21531622_21566693_21567567_21659821
transcript_38276.known	chr14	+	1613	6	FSM	ENSMUSG00000021770.12	ENSMUST00000144061.2	1613	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	6.01331855134916	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTCCCAGGCTCCTG	2631	False	NA	NA	False	AATATA	-25	NA	21800615	21843370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_21800905_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
transcript_38277.known	chr14	+	1574	6	FSM	ENSMUSG00000021770.12	ENSMUST00000022292.10	1574	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	7.55248303539968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTCCCAGGCTCCTG	2614	False	NA	NA	False	AATATA	-25	NA	21800598	21843370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_21800849_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
transcript_38284.known	chr14	+	1954	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	0	0	0	0	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCAGTTTCTAAGTT	NA	False	NA	12	True	AATAAA	-22	NA	21881336	21895947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
transcript_38295.known	chr14	+	893	9	FSM	ENSMUSG00000021771.15	ENSMUST00000153320.8	893	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	733.885028035727	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGGATCAATTTATCAG	NA	False	NA	NA	False	NA	NA	NA	21881338	21890503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_21881513_21881645_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486
transcript_38296.known	chr14	-	2314	7	FSM	ENSMUSG00000021773.12	ENSMUST00000124549.9	2314	7	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_3	15.9661099415815	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATCTCAAAGACCTCG	NA	False	NA	NA	False	ATTAAA	-21	NA	21899045	21895922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
transcript_38299.known	chr14	-	981	6	FSM	ENSMUSG00000021773.12	ENSMUST00000022295.4	981	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	9.09065454189081	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGAGCATCCTCTTCC	NA	False	NA	-10	True	AATAAA	-17	NA	21898962	21897246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
transcript_38311.known	chr14	-	4216	3	FSM	ENSMUSG00000039081.11	ENSMUST00000043409.9	4216	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTTATTTTTTCCTTTT	NA	False	NA	NA	False	ATTAAA	-43	NA	22039669	22034026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_22036585_22037271_22038353_22039092
transcript_38314.known	chr14	-	7851	32	FSM	ENSMUSG00000021782.15	ENSMUST00000090398.11	7851	32	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_27	24.1232527147577	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCTGTGTGTAGACCCT	NA	False	NA	-6	True	AATAAA	-14	NA	24295988	24184022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199581_24200206_24200341_24200579_24200743_24204298_24204450_24204667_24204758_24205208_24205322_24206539_24206685_24207013_24207138_24207802_24208823_24210312_24210406_24214098_24214203_24214465_24214642_24215312_24215441_24216228_24216362_24220497_24220624_24222087_24222273_24226463_24226777_24227795_24228056_24240385_24240570_24241215_24241360_24242859_24243023_24252365_24252435_24295214
transcript_38315.nic	chr14	-	2655	6	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	33046	0	1445	0	3prime_fragment	TRUE	canonical	3	145	junction_4	6.05309838016862	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGTGTGTAGACCCTGG	NA	False	NA	-4	True	AATAAA	-16	NA	24194811	24184020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369
transcript_38317.known	chr14	-	4687	31	FSM	ENSMUSG00000025280.9	ENSMUST00000026322.9	4687	31	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_23	15.9947560851118	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTAAGTGTTTTTTGTT	NA	False	NA	-3	True	AATACA	-26	NA	24537120	24498763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_24499291_24500762_24500896_24502260_24502393_24502578_24502744_24503238_24503404_24504637_24504731_24504922_24505017_24505931_24506103_24507084_24507168_24507286_24507374_24510031_24510146_24511767_24511939_24513621_24513760_24514319_24514439_24515328_24515441_24517002_24517176_24519332_24519498_24520601_24520741_24520887_24521016_24521805_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
transcript_38325.nic	chr14	-	718	5	ISM	ENSMUSG00000025280.9	ENSMUST00000026322.9	4687	31	-30	33777	-24	1330	5prime_fragment	FALSE	canonical	3	134	junction_1	7.46240577829965	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGTGGATCCCATTGTATC	NA	False	NA	NA	False	AATACA	-15	NA	24537150	24532540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
transcript_38327.known	chr14	-	775	3	FSM	ENSMUSG00000025280.9	ENSMUST00000225014.2	775	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAAAAAAAAAATCTG	NA	False	NA	NA	False	NA	NA	NA	24537126	24533870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_24534324_24534454_24534591_24536940
transcript_38329.known	chr14	+	525	7	FSM	ENSMUSG00000025290.18	ENSMUST00000223999.2	525	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	5419.3877396088	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540797	24545913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24544119_24544138_24545497_24545518_24545842
transcript_38330.known	chr14	+	519	6	FSM	ENSMUSG00000025290.18	ENSMUST00000169826.3	519	6	0	0	0	0	multi-exon	FALSE	canonical	3	4464	junction_5	3607.86166031903	1786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540785	24545913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
transcript_38332.known	chr14	+	714	6	FSM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_1	4812.24305288085	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCTGAGAGGACAAATAAA	NA	False	NA	-18	True	NA	NA	NA	24540834	24545891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
transcript_38333.known	chr14	+	1613	5	FSM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	0	0	0	0	multi-exon	FALSE	canonical	3	4092	junction_4	3560.754932244	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTTGGGACTGGAGAG	NA	False	NA	NA	False	AATAAA	-20	NA	24540785	24547027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545842
transcript_38336.known	chr14	+	2769	4	FSM	ENSMUSG00000025290.18	ENSMUST00000223939.2	2769	4	0	0	0	0	multi-exon	FALSE	canonical	3	9630	junction_1	1522.07774659071	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540796	24545913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450
transcript_38340.known	chr14	+	4059	3	FSM	ENSMUSG00000025290.18	ENSMUST00000225994.2	4059	3	0	0	0	0	multi-exon	FALSE	canonical	3	9630	junction_1	1373	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTGCTCTGCTGCTTAT	NA	False	NA	17	True	AATAAA	-16	NA	24540785	24545926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_24540827_24541817_24541884_24541974
transcript_38343.known	chr14	+	468	5	FSM	ENSMUSG00000025290.18	ENSMUST00000112384.10	468	5	0	0	0	0	multi-exon	FALSE	canonical	3	5102	junction_4	3158.6347030798	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGATTGGATACAGGTA	NA	False	NA	NA	False	NA	NA	NA	24540748	24545500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497
transcript_38346.known	chr14	+	1549	6	FSM	ENSMUSG00000021868.8	ENSMUST00000022419.7	1549	6	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_3	21.4532048887806	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTCTGGTTTTGGA	392	False	NA	NA	False	AATAAA	-18	NA	25694593	25700892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
transcript_38349.nnic	chr14	+	1530	5	NIC	ENSMUSG00000021868.8	novel	1549	6	NA	NA	-62	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_3	185.642633842552	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTCTGGTTTTGGA	314	False	NA	NA	False	AATAAA	-18	NA	25694515	25700892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_25694848_25695896_25695928_25696427_25696517_25698689_25698766_25699890
transcript_38351.known	chr14	+	3637	4	FSM	ENSMUSG00000021868.8	ENSMUST00000125881.2	3637	4	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_3	19.2006944318862	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGGCTGTCTCTGGTTT	376	False	NA	NA	False	AATAAA	-14	NA	25694577	25700888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_25694848_25695896_25695928_25696427_25698766_25699890
transcript_38353.known	chr14	-	4556	4	FSM	ENSMUSG00000055538.8	ENSMUST00000069180.8	4556	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	4.78423336480244	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTCGTGAGTTTGTATA	NA	False	NA	-1	True	ATTAAA	-18	NA	25769463	25712065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_25715827_25720050_25720216_25757434_25757636_25769034
transcript_38357.nnic	chr14	+	2496	16	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	-24	0	at_least_one_novel_splicesite	TRUE	canonical	3	18	junction_1	139.082165962746	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	312	False	NA	26	True	AATAAA	-34	NA	25842555	25887228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_25842720_25843130_25843209_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
transcript_38363.known	chr14	+	2394	15	FSM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_6	25.4603533329122	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	336	False	NA	26	True	AATAAA	-34	NA	25842579	25887228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
transcript_38366.known	chr14	+	2733	14	FSM	ENSMUSG00000021866.16	ENSMUST00000133547.2	2733	14	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_4	23.1322413898	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	2	True	NA	26	True	AATAAA	-34	NA	25842606	25887228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
transcript_38370.known	chr14	-	536	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183431.8	536	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	71.4624998785299	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902898	25888827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902704
transcript_38372.known	chr14	-	1555	4	FSM	ENSMUSG00000095304.10	ENSMUST00000052286.16	1555	4	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_3	28.7170100579198	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGTTTAGCTCACAGTC	NA	False	NA	NA	False	AATATA	-19	NA	25903524	25887929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25903209
transcript_38375.nnic	chr14	-	411	4	NNC	ENSMUSG00000095304.10	novel	536	4	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_3	82.174610839764	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902912	25888827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_25888951_25889319_25889444_25891184_25891280_25902843
transcript_38379.known	chr14	-	1108	4	FSM	ENSMUSG00000072676.13	ENSMUST00000100811.6	1108	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	63.5627424063989	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTCTCTTGATCGTGA	NA	False	NA	-13	True	NA	NA	NA	25927674	25924593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927468
transcript_3838.known	chr1	+	2046	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGAAACTTTATCTGTGA	NA	False	NA	NA	False	AATAAA	-26	NA	97697896	97720694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
transcript_38380.known	chr14	-	2147	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATAAGTTGCCTCGATCA	NA	False	NA	NA	False	NA	NA	NA	25928096	25923723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
transcript_38385.known	chr14	+	1649	4	FSM	ENSMUSG00000095975.4	ENSMUST00000184016.3	1649	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.94392028877595	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAACTTCCAAACCAAAATA	NA	False	NA	NA	False	AATAAA	-6	NA	25942962	25956780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_25943025_25952339_25952543_25955303_25955421_25955513
transcript_38388.known	chr14	-	5476	24	FSM	ENSMUSG00000021870.18	ENSMUST00000102956.8	5476	24	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_11	42.4199902941944	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGAGTTGTACATCATT	NA	False	NA	1	True	AATAAA	-23	NA	26256086	26134322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26180564_26180616_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
transcript_38393.nic	chr14	-	5419	23	NIC	ENSMUSG00000021870.18	novel	5476	24	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	49.6311394187157	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCATGTTTGAGTTGTA	NA	False	NA	-6	True	AATAAA	-16	NA	26256087	26134329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
transcript_38396.nic	chr14	-	5440	22	NIC	ENSMUSG00000021870.18	novel	5476	24	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_11	32.5658586159231	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCATGTTTGAGTTGTA	NA	False	NA	-6	True	AATAAA	-16	NA	26256159	26134329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
transcript_38405.nic	chr14	-	2410	13	ISM	ENSMUSG00000021870.18	ENSMUST00000102956.8	5476	24	-7	46259	-7	373	5prime_fragment	FALSE	canonical	3	106	junction_2	41.8299301404575	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGGAGCACAGAAAAAGGTA	NA	False	NA	NA	False	AATAAA	-1	NA	26256093	26180581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_26180616_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
transcript_38408.nic	chr14	-	2235	11	ISM	ENSMUSG00000021870.18	ENSMUST00000102956.8	5476	24	-16	46973	-16	-341	5prime_fragment	FALSE	canonical	3	202	junction_8	12.459534501738	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGATGAAATGGAAGAAAAA	NA	False	NA	-6	True	NA	NA	NA	26256102	26181295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
transcript_3841.known	chr1	+	2494	8	FSM	ENSMUSG00000026333.15	ENSMUST00000027571.13	2494	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	17.1939714162035	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGCATGTCCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	97697921	97721434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710918_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
transcript_38413.known	chr14	+	6638	20	FSM	ENSMUSG00000040818.11	ENSMUST00000037585.9	6638	20	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_11	139.009495679959	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGATATTACTTTTCC	NA	False	NA	NA	False	ATTAAA	-13	NA	26300732	26355477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_26301018_26313387_26313427_26313549_26313593_26320770_26320884_26321598_26321680_26324202_26324309_26325828_26325909_26327030_26327094_26328059_26328116_26329244_26329368_26329690_26329787_26333121_26333217_26337745_26337812_26338048_26338114_26340469_26340560_26347860_26347915_26348019_26348130_26348473_26348577_26349826_26349902_26350582
transcript_38420.known	chr14	+	2677	18	FSM	ENSMUSG00000040818.11	ENSMUST00000203874.3	2677	18	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_11	137.404461933263	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTTTATTTTTTCTGT	NA	False	NA	NA	False	AATAAA	-22	NA	26300715	26349568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_26301018_26313387_26313427_26313549_26313593_26320770_26320884_26321598_26321680_26324202_26324309_26325828_26325909_26327030_26327094_26328059_26328116_26329244_26329368_26329690_26329787_26333121_26333217_26337745_26337812_26338048_26338114_26340469_26340560_26347860_26347915_26348019_26348130_26348473
transcript_38425.known	chr14	+	2165	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	0	0	0	0	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	1686	False	NA	NA	False	NA	NA	NA	26359228	26378413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
transcript_38430.known	chr14	-	7725	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_2	18	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGTGGGTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	26391038	26381112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_26387123_26387532_26387612_26389402
transcript_38433.known	chr14	+	1034	1	FSM	ENSMUSG00000021877.13	ENSMUST00000224138.2	1034	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAAATCG	1855	False	NA	NA	False	TTTAAA	-31	NA	26359397	26360431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_26359400_26360400
transcript_38434.known	chr14	+	1582	6	FSM	ENSMUSG00000021877.13	ENSMUST00000166075.8	1582	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	718.995577176939	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATTTGGAATTATTCCT	1838	False	NA	-35	True	AATGAA	-16	NA	26359380	26377956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_26359642_26367813_26367895_26368042_26368179_26374260_26374333_26374991_26375118_26377050
transcript_38437.known	chr14	-	7642	22	FSM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_6	31.5683759207952	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTGTATGAAATATTT	NA	False	NA	-12	True	AATAAA	-20	NA	26693189	26640944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
transcript_38459.known	chr14	-	1226	8	FSM	ENSMUSG00000040760.12	ENSMUST00000142645.8	1226	8	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_3	30.2580736400744	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-3	NA	26692457	26674375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
transcript_3846.known	chr1	+	1037	3	FSM	ENSMUSG00000026333.15	ENSMUST00000112842.8	1037	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	10	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAGAAAGGAAGGAAAGA	NA	False	NA	NA	False	NA	NA	NA	97697903	97705864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_97697981_97703171_97703318_97705050
transcript_38464.known	chr14	+	983	5	FSM	ENSMUSG00000040726.11	ENSMUST00000224331.2	983	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	69.4383719567215	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACCGGTATTTTAATATA	NA	False	NA	NA	False	AATAAA	-14	NA	26716372	26724282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_26716480_26722579_26722834_26723328_26723529_26723775_26723878_26723962
transcript_38465.known	chr14	+	8280	13	FSM	ENSMUSG00000040717.7	ENSMUST00000035336.5	8280	13	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	4.46902922593064	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCAGTGGCTCCTTATT	NA	False	NA	5	True	AATAAA	-15	NA	26760897	26829243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_26761187_26798307_26798366_26804611_26804738_26809355_26809475_26809962_26810084_26813745_26813791_26813885_26814038_26815353_26815420_26816134_26816190_26816732_26816844_26817859_26818045_26821439_26822383_26823233
transcript_3847.known	chr1	+	517	2	FSM	ENSMUSG00000026333.15	ENSMUST00000122925.2	517	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCACAATCCTGTGTTTA	NA	False	NA	NA	False	ATTAAA	-29	NA	97697925	97698730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_97697981_97698268
transcript_38474.nnic	chr14	+	3754	13	NIC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-91	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	15.3622914957372	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	AATAAA	-15	NA	26836764	27125868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_26836881_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
transcript_38475.nnic	chr14	+	4109	13	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	13.9363633069112	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	AATAAA	-15	NA	26836801	27125868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_26837273_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
transcript_38478.known	chr14	+	3585	11	FSM	ENSMUSG00000021895.11	ENSMUST00000049206.6	3585	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	18.4361058794964	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACACCTTTTCCTCCTG	NA	False	NA	NA	False	AATAAA	-8	NA	26959995	27125861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_26960111_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
transcript_3848.known	chr1	-	4095	26	FSM	ENSMUSG00000026335.17	ENSMUST00000058762.15	4095	26	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_12	6.89301095313216	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCAGAGTGTATTTTTG	NA	False	NA	-6	True	AATAAA	-18	NA	98023346	97748818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_97749714_97750660_97750715_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97791927_97792246_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581_97904985_98023209
transcript_38480.known	chr14	+	3618	10	FSM	ENSMUSG00000021895.11	ENSMUST00000224981.2	3618	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	14.3716112484489	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	AATAAA	-15	NA	27058022	27125868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_27058227_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
transcript_38482.known	chr14	+	7590	24	FSM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_17	57.5794347345285	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTCGGGACTTTGATTC	8928	False	NA	16	True	AATAAA	-20	NA	27150790	27205512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27189462_27189523_27193574_27194504_27197651_27197775_27198494_27198655_27199068_27199178_27201585_27201765_27201880_27202049_27202598
transcript_3849.nic	chr1	-	3792	25	NIC	ENSMUSG00000026335.17	novel	4102	26	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_2	5.09884927105017	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTCAGAGTGTATTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	98023362	97748819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_97749714_97750660_97750715_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581_97904985_98023209
transcript_38492.known	chr14	-	4262	18	FSM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	12.2471661858887	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGACTGCAATTCAATT	7526	False	NA	NA	False	AATAAA	-17	NA	27230417	27203046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
transcript_38494.nnic	chr14	+	3744	17	NIC	ENSMUSG00000040651.10	novel	7590	24	NA	NA	-38	6159	combination_of_known_splicesites	FALSE	canonical	3	154	junction_16	37.6893138037826	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCCAGTGATATAACCAT	8890	False	NA	NA	False	AAAAAG	-12	NA	27150752	27194332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040_27183743_27186002_27186371_27188123_27188269_27193574
transcript_38501.nic	chr14	+	1864	14	ISM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	-24	22365	-24	-5026	5prime_fragment	FALSE	canonical	3	228	junction_8	25.0490642799641	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATTCAAAACTATAAACAC	8904	False	NA	NA	False	ATTAAA	-44	NA	27150766	27183147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040
transcript_38502.nic	chr14	+	2583	14	ISM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	-282	21904	-282	-4565	5prime_fragment	FALSE	canonical	3	228	junction_8	25.0490642799641	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGTGGAGATCCAGATC	8646	False	NA	NA	False	NA	NA	NA	27150508	27183608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040
transcript_38503.nic	chr14	+	2426	14	ISM	ENSMUSG00000040651.10	ENSMUST00000022450.6	7590	24	-27	21806	-27	-4467	5prime_fragment	FALSE	canonical	3	228	junction_8	25.0490642799641	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGTAATTCAACTGAAAGT	8901	False	NA	NA	False	NA	NA	NA	27150763	27183706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_27151342_27160555_27160702_27162107_27162201_27163386_27163460_27163843_27163936_27164415_27164578_27168341_27168467_27169447_27169480_27170111_27170218_27171713_27171818_27171902_27172007_27181735_27181809_27181897_27181970_27183040
transcript_38510.nic	chr14	-	915	7	ISM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	-47	16336	-47	-15014	5prime_fragment	FALSE	canonical	3	74	junction_4	8.11719710792395	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAGAAGCTTCCCAAAA	7479	False	NA	NA	False	AAGAAA	-1	NA	27230464	27219382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
transcript_3852.known	chr1	-	3630	24	FSM	ENSMUSG00000026335.17	ENSMUST00000161567.8	3630	24	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	5.01867966278542	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTAGCAGTCAGAGTGTA	5780	False	NA	-12	True	AATAAA	-12	NA	97904980	97748824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_97749714_97750660_97750715_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827_97780958_97811850_97811923_97813326_97813512_97822085_97822190_97823356_97823434_97823693_97823775_97824932_97825001_97826065_97826115_97850818_97850903_97852155_97852242_97862375_97862464_97872344_97872403_97903509_97903631_97904581
transcript_38521.nic	chr14	+	1180	4	NIC	ENSMUSG00000040640.12	novel	1099	4	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_2	17.7451088722749	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTTATTGTCTGTTTA	2294	False	NA	15	True	ATTAAA	-12	NA	27344352	27375759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_27344572_27345639_27345707_27374643_27375441_27375662
transcript_38524.nic	chr14	+	1169	3	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	-88	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	11	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTTATTGTCTGTTTA	2238	False	NA	15	True	ATTAAA	-12	NA	27344296	27375759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_27344572_27374643_27375441_27375662
transcript_38525.nic	chr14	+	2571	3	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	-88	1402	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	11	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACATTCTTGTTTGTTTGT	2238	False	NA	NA	False	AATAAA	-21	NA	27344296	27377161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_27344572_27374643_27375441_27375662
transcript_38526.known	chr14	+	1678	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	0	0	0	0	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACATAAAATAGGCCCT	NA	False	NA	NA	False	NA	NA	NA	29690264	29697619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
transcript_3853.known	chr1	-	489	1	FSM	ENSMUSG00000089782.2	ENSMUST00000162698.2	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAGCAACTTCTGAAGA	8543	False	NA	NA	False	NA	NA	NA	97877114	97876625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_97876600_97877100
transcript_38531.nnic	chr14	+	2367	14	NNC	ENSMUSG00000015971.6	novel	2328	14	NA	NA	6	-1253	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_13	85.8768900035766	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGCTACTTACCGGAT	NA	False	NA	6	True	ATTAAA	-19	NA	29700299	29716571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917_29715103_29716243
transcript_38535.known	chr14	+	2119	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACTGATTTGAGATAAT	NA	False	NA	21	True	ATTAAA	-25	NA	29700293	29715176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
transcript_3854.known	chr1	+	2858	2	FSM	ENSMUSG00000067017.6	ENSMUST00000086725.6	2858	2	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATCCATGCCACACTG	NA	False	NA	NA	False	AATAAA	-29	NA	105383695	105386554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_105384509_105384509
transcript_38554.known	chr14	+	1728	1	FSM	ENSMUSG00000015971.6	ENSMUST00000224343.2	1728	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAACTGCATTTTCTATT	NA	False	NA	NA	False	NA	NA	NA	29700361	29702089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_29700400_29702100
transcript_38555.known	chr14	+	2328	14	FSM	ENSMUSG00000015971.6	ENSMUST00000224797.2	2328	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	90.2104705346494	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTTTGTGTATTTGTGT	NA	False	NA	NA	False	AATAAA	-30	NA	29700374	29728311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917_29715103_29727947
transcript_38556.known	chr14	+	5576	10	FSM	ENSMUSG00000021962.10	ENSMUST00000022535.9	5576	10	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_5	16.6332999331662	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATTGTGTTTTTTATT	NA	False	NA	NA	False	AATAAA	-34	NA	30201568	30249020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30234940_30235055_30240875_30241635_30243546_30243613_30244684_30244904_30245182
transcript_38558.nic	chr14	+	5447	9	NIC	ENSMUSG00000021962.10	novel	5576	10	NA	NA	-8	0	intron_retention	FALSE	canonical	3	24	junction_5	46.725093632865	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATTGTGTTTTTTATT	NA	False	NA	NA	False	AATAAA	-34	NA	30201583	30249020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30240875_30241635_30243546_30243613_30244684_30244904_30245182
transcript_38560.known	chr14	+	2044	3	FSM	ENSMUSG00000021962.10	ENSMUST00000225518.2	2044	3	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGAAAATAAAAATAG	NA	False	NA	NA	False	NA	NA	NA	30201591	30208236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30201774_30204149_30204191_30206415
transcript_38562.known	chr14	+	3194	11	FSM	ENSMUSG00000021962.10	ENSMUST00000225196.2	3194	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_10	46.3676611443795	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAAATTCTAATTGTGTT	NA	False	NA	NA	False	AATAAA	-27	NA	30201568	30249013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30234940_30235055_30240875_30241635_30243546_30243613_30244684_30244904_30245182_30245769_30248143
transcript_38566.known	chr14	+	3223	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	0	0	0	0	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATTACTGGAGGATTAGA	NA	False	NA	NA	False	NA	NA	NA	30271087	30296677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
transcript_38567.known	chr14	-	2851	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112211.9	2851	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_8	28.1631431086409	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGCTGTGGGGACATT	5423	False	NA	-5	True	AATAAA	-15	NA	30348165	30317312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324615_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
transcript_38568.known	chr14	-	2777	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112210.11	2777	18	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_17	15.936508975905	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTGGGGACATTTA	5421	False	NA	-3	True	AATAAA	-17	NA	30348167	30317310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
transcript_38573.known	chr14	+	2347	13	FSM	ENSMUSG00000052395.18	ENSMUST00000228686.2	2347	13	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_8	13.9351175093718	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTCTTTCCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	30376363	30413274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30376433_30380265_30380352_30382153_30382271_30383227_30383418_30385034_30385137_30388635_30388774_30396126_30396206_30398806_30398865_30399643_30399775_30401187_30401333_30404707_30404814_30411661_30411912_30412398
transcript_38587.known	chr14	+	7837	21	FSM	ENSMUSG00000006527.17	ENSMUST00000054230.12	7837	21	0	0	0	0	multi-exon	TRUE	canonical	3	68	junction_1	13.3913218167588	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATATGCGTGCTTTTCT	NA	False	NA	NA	False	ATTAAA	-24	NA	30437571	30544678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30437833_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
transcript_38590.known	chr14	+	3299	21	FSM	ENSMUSG00000006527.17	ENSMUST00000228006.2	3299	21	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	22.2285852001426	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAAGTGGCTCTAGGGTTT	NA	False	NA	27	True	ATTAAA	-19	NA	30438447	30540303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30438546_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
transcript_38601.known	chr14	+	3822	9	FSM	ENSMUSG00000006526.14	ENSMUST00000227246.2	3822	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	95.194209382714	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATGGTGGTTGCTTTTTT	NA	False	NA	NA	False	AATAAA	-32	NA	30547546	30599167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30547848_30584836_30584886_30585144_30585225_30586385_30586482_30588579_30588702_30592707_30592821_30593437_30593516_30594506_30594657_30596334
transcript_38604.known	chr14	+	3742	8	FSM	ENSMUSG00000006526.14	ENSMUST00000006701.8	3742	8	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	11.5387545750335	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATGGTGGTTGCTTTTTT	NA	False	NA	NA	False	AATAAA	-32	NA	30547546	30599167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30547848_30584836_30584886_30586385_30586482_30588579_30588702_30592707_30592821_30593437_30593516_30594506_30594657_30596334
transcript_38614.known	chr14	+	640	3	FSM	ENSMUSG00000006526.14	ENSMUST00000228066.2	640	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	105.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCTGTCTCTGCCCGC	NA	False	NA	NA	False	NA	NA	NA	30547550	30596527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30547848_30594506_30594657_30596334
transcript_38618.known	chr14	+	4245	15	FSM	ENSMUSG00000021918.11	ENSMUST00000228328.2	4245	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	13.7241408043027	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTATGGTGTGTG	NA	False	NA	27	True	AGTAAA	-18	NA	30673333	30710778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681253_30685889_30686032_30692119_30692522_30696171_30696316_30697179_30697330_30697717_30697785_30699402_30699537_30701946_30702036_30704270_30704474_30706300_30706435_30709068
transcript_38624.known	chr14	+	4098	14	FSM	ENSMUSG00000021918.11	ENSMUST00000226551.2	4098	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_7	14.1684707054141	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTTGTGTGTATGGTGT	NA	False	NA	24	True	AGTAAA	-15	NA	30673333	30710775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681253_30685889_30686032_30692119_30692522_30697179_30697330_30697717_30697785_30699402_30699537_30701946_30702036_30704270_30704474_30706300_30706435_30709068
transcript_38629.known	chr14	+	1252	5	FSM	ENSMUSG00000021918.11	ENSMUST00000226833.2	1252	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	6.25999201277446	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGCTCAGTGATTAAG	NA	False	NA	NA	False	NA	NA	NA	30673434	30681535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097
transcript_3863.known	chr1	-	1362	10	FSM	ENSMUSG00000056536.15	ENSMUST00000191408.7	1362	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	24.4969133858145	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTACTTTTTCAGTCAGT	NA	False	NA	NA	False	AATAAA	-16	NA	105591402	105574353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586640_105586732_105587017_105587092_105591224
transcript_38635.known	chr14	+	1498	10	FSM	ENSMUSG00000021916.17	ENSMUST00000168584.9	1498	10	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_1	28.2055944017416	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTATTTGCTTCCCCATTT	3526	False	NA	8	True	AATAAA	-19	NA	30723356	30733947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30723386_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
transcript_38637.known	chr14	+	2018	10	FSM	ENSMUSG00000021916.17	ENSMUST00000022476.9	2018	10	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	32.2321823686655	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGCTTCCCCATTTT	3576	False	NA	9	True	AATAAA	-20	NA	30723406	30733948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30723955_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
transcript_38647.known	chr14	-	702	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228736.2	702	4	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	30723320	30721783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
transcript_3865.known	chr1	-	3015	26	FSM	ENSMUSG00000056536.15	ENSMUST00000190811.7	3015	26	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	16.302932251592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTATAACTTGTTGCT	NA	False	NA	NA	False	AATAAA	-15	NA	105591387	105484530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_105484791_105485187_105485275_105485712_105485816_105493872_105493976_105507646_105507756_105512713_105512823_105515704_105515797_105516773_105516867_105516950_105517051_105519346_105519487_105525392_105525576_105526773_105526853_105565234_105565291_105565907_105566001_105568389_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586611_105586732_105587017_105587092_105591224
transcript_38651.known	chr14	-	378	3	FSM	ENSMUSG00000021917.17	ENSMUST00000227838.2	378	3	0	0	0	0	multi-exon	FALSE	canonical	3	1787	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTCCATGGCCTATCTA	NA	False	NA	NA	False	AATAAA	-34	NA	30723307	30722173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30722180_30722634_30722861_30723161
transcript_38652.known	chr14	-	592	3	FSM	ENSMUSG00000021917.17	ENSMUST00000226374.2	592	3	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_1	35	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTTAAAACTTGTATGTG	NA	False	NA	NA	False	GGGGCT	-35	NA	30723324	30722352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30722722_30722800_30722861_30723161
transcript_38653.known	chr14	+	1692	8	FSM	ENSMUSG00000021916.17	ENSMUST00000228255.2	1692	8	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_6	42.5992239078486	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACCTATTTGCTTCCCCA	8585	False	NA	5	True	AATAAA	-16	NA	30728415	30733944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30728470_30728589_30728689_30730610_30730825_30731691_30732123_30732253_30732367_30732820_30732988_30733079_30733191_30733441
transcript_38658.nic	chr14	+	3225	21	NIC	ENSMUSG00000042323.18	novel	6566	33	NA	NA	-29	-7668	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	63.5380791336975	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8186	False	NA	NA	False	AAAACA	-38	NA	30741065	30796887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_30741251_30744676_30744817_30745023_30745137_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30778192_30778238_30783425_30783703_30786702_30786809_30789278_30789922_30796727
transcript_38661.nic	chr14	+	3180	20	NIC	ENSMUSG00000042323.18	novel	3137	20	NA	NA	-29	-7668	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	56.1890359076634	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8186	False	NA	NA	False	AAAACA	-38	NA	30741065	30796887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_30741251_30744676_30744817_30745023_30745137_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727
transcript_38662.nic	chr14	+	3112	20	ISM	ENSMUSG00000042323.18	ENSMUST00000112098.11	6566	33	-29	45111	-29	-7668	5prime_fragment	FALSE	canonical	3	38	junction_15	52.0642049823409	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8186	False	NA	NA	False	AAAACA	-38	NA	30741065	30796887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30778192_30778238_30783425_30783703_30786702_30786809_30789278_30789922_30796727
transcript_38669.nic	chr14	+	3067	19	ISM	ENSMUSG00000042323.18	ENSMUST00000112095.8	7907	31	-29	46662	-29	-7668	5prime_fragment	FALSE	canonical	3	98	junction_2	38.2001308898281	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8186	False	NA	NA	False	AAAACA	-38	NA	30741065	30796887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727
transcript_38670.nic	chr14	+	3016	19	NIC	ENSMUSG00000042323.18	novel	6566	33	NA	NA	-29	-7668	combination_of_known_junctions	FALSE	canonical	3	38	junction_14	56.10627041826	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8186	False	NA	NA	False	AAAACA	-38	NA	30741065	30796887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30778192_30778238_30783425_30783703_30786702_30786809_30789278_30789922_30796727
transcript_38674.nic	chr14	+	3005	19	NIC	ENSMUSG00000042323.18	novel	3137	20	NA	NA	-5	-7668	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	57.970751458743	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8221	False	NA	NA	False	AAAACA	-38	NA	30741100	30796887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_30741251_30745023_30745137_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727
transcript_38678.nic	chr14	+	2971	18	ISM	ENSMUSG00000042323.18	ENSMUST00000112094.8	5154	30	-61	44037	-29	-7668	5prime_fragment	FALSE	canonical	3	61	junction_10	43.0484558395886	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8186	False	NA	NA	False	AAAACA	-38	NA	30741065	30796887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727
transcript_38679.nnic	chr14	+	2905	18	NIC	ENSMUSG00000042323.18	novel	7907	31	NA	NA	-7	-7668	combination_of_known_splicesites	FALSE	canonical	3	48	junction_1	43.8212000960114	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8208	False	NA	NA	False	AAAACA	-38	NA	30741087	30796887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_30741251_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727
transcript_3868.known	chr1	+	4328	29	FSM	ENSMUSG00000026319.14	ENSMUST00000039173.13	4328	29	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_7	18.9304244376019	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATAATGCAGACTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	105591607	105681800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105619936_105620029_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658925_105659006_105662242_105662350_105663647_105663748_105668159_105668243_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
transcript_38683.nnic	chr14	+	2809	17	NIC	ENSMUSG00000042323.18	novel	3137	20	NA	NA	-7	-7668	combination_of_known_splicesites	FALSE	canonical	3	48	junction_1	48.6575646097295	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCCTAAAGAAATAGAGGA	8208	False	NA	NA	False	AAAACA	-38	NA	30741087	30796887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_30741251_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727
transcript_38691.nic	chr14	+	1113	9	ISM	ENSMUSG00000042323.18	ENSMUST00000112094.8	5154	30	-61	78476	-29	8428	5prime_fragment	FALSE	canonical	3	98	junction_2	40.0374824383352	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCCAAAACATACAATGAGC	8186	False	NA	NA	False	NA	NA	NA	30741065	30762448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389
transcript_38692.known	chr14	+	7907	31	FSM	ENSMUSG00000042323.18	ENSMUST00000112095.8	7907	31	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_27	38.4939244845498	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATCAGCCAGGTTTGG	8215	False	NA	14	True	AATAAA	-21	NA	30741094	30843549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30741251_30744676_30744817_30747454_30747608_30749404_30749503_30752800_30752949_30754365_30754510_30757899_30758017_30760889_30760959_30762389_30762489_30766580_30766667_30767286_30767383_30768288_30768381_30771994_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30835805_30835962_30838969_30839041_30839156_30839374_30840685
transcript_38694.known	chr14	-	1765	15	FSM	ENSMUSG00000042354.8	ENSMUST00000226740.2	1765	15	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_10	235.33125806065	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30740975	30734389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_38695.known	chr14	-	1947	15	FSM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_10	82.9678140200482	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741109	30734389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_387.nnic	chr1	-	940	4	NNC	ENSMUSG00000098234.8	novel	473	4	NA	NA	-38	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	295.388256743937	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGGCAGTAATTTC	NA	False	NA	-13	True	AATAAA	-14	NA	10014381	10012247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_10012381_10012547_10012617_10012834_10012943_10013751
transcript_3871.known	chr1	+	5414	29	FSM	ENSMUSG00000026319.14	ENSMUST00000086721.10	5414	29	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_22	32.829491470385	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATTTTAGAAATCTAATC	NA	False	NA	88	True	AATAAA	-18	NA	105591637	105682916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105619936_105620029_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658925_105659006_105662242_105662350_105663647_105663748_105668737_105668821_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
transcript_38720.nic	chr14	-	780	7	ISM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	73	2845	14	0	5prime_fragment	FALSE	canonical	3	775	junction_2	64.4144566244428	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTATGCTGTTGTTAGTG	NA	False	NA	-3	True	NA	NA	NA	30741036	30737234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_38724.known	chr14	-	666	5	FSM	ENSMUSG00000042354.8	ENSMUST00000227170.2	666	5	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_4	51.3048486987341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGGCATGCATTTCCCAA	NA	False	NA	NA	False	NA	NA	NA	30741001	30738622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_38727.nic	chr14	-	582	4	ISM	ENSMUSG00000042354.8	ENSMUST00000227170.2	666	5	-206	439	-98	-439	5prime_fragment	FALSE	canonical	3	853	junction_3	49.7482551341139	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGTTAGCCCTGGTGA	NA	False	NA	NA	False	AAAAAG	-21	NA	30741207	30739061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_30739125_30739232_30739371_30739764_30739824_30740885
transcript_3873.known	chr1	+	3852	28	FSM	ENSMUSG00000026319.14	ENSMUST00000190501.7	3852	28	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	28.6954109884661	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGTTCTTGTGTTATA	NA	False	NA	NA	False	NA	NA	NA	105591647	105681436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_105592359_105605887_105605978_105614854_105614911_105615006_105615121_105619630_105619835_105619936_105620029_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658925_105659006_105662242_105662350_105663647_105663748_105668159_105668243_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
transcript_38735.known	chr14	-	1219	2	FSM	ENSMUSG00000058351.12	ENSMUST00000203261.3	1219	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTATCTTTCAATCTT	NA	False	NA	NA	False	AATAAA	-13	NA	30850913	30810088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30810984_30850589
transcript_38736.known	chr14	-	311	2	FSM	ENSMUSG00000058351.12	ENSMUST00000049732.11	311	2	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATTTCAGCCATTTT	NA	False	NA	-11	True	AATAAA	-18	NA	30850795	30846461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30846567_30850589
transcript_38737.known	chr14	-	426	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATAAAAATATTTTAA	NA	False	NA	NA	False	NA	NA	NA	30850860	30846635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30846791_30850589
transcript_3874.known	chr1	+	4338	29	FSM	ENSMUSG00000026319.14	ENSMUST00000186807.7	4338	29	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	37.2331834386961	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAGAATAATGCAGACT	NA	False	NA	NA	False	AATAAA	-28	NA	105591585	105681797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658925_105659006_105662242_105662350_105663647_105663748_105668159_105668243_105668737_105668821_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
transcript_38741.known	chr14	+	1848	14	FSM	ENSMUSG00000071547.5	ENSMUST00000227096.2	1848	14	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_7	36.4029064448587	564	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGCTTCATTCCAGCT	NA	False	NA	20	True	AATAAA	-22	NA	30853009	30861081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30853334_30856695_30856881_30856986_30857062_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
transcript_38757.known	chr14	-	5559	21	FSM	ENSMUSG00000021910.16	ENSMUST00000022469.13	5559	21	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_8	71.9902076674321	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGTCTTCAAGGTTATA	9321	False	NA	-4	True	AATAAA	-17	NA	30928758	30892886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30894136_30894393_30894556_30895020_30895150_30895543_30895701_30896212_30896844_30898286_30899670_30901792_30901843_30902778_30902907_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
transcript_38762.known	chr14	-	2780	14	FSM	ENSMUSG00000021910.16	ENSMUST00000172142.8	2780	14	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_1	267.283529621824	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACATCTTTTTCCTTT	9296	False	NA	3	True	AATAAA	-20	NA	30928783	30905269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30906355_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
transcript_38765.known	chr14	-	2415	11	FSM	ENSMUSG00000021910.16	ENSMUST00000165981.8	2415	11	0	0	0	0	multi-exon	FALSE	canonical	3	935	junction_6	81.5207948930824	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAGAAAGAAAA	9422	False	NA	NA	False	AATGAA	-35	NA	30928657	30907646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
transcript_3877.known	chr1	+	874	2	FSM	ENSMUSG00000026319.14	ENSMUST00000191150.2	874	2	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTCTGCTTCATAGA	NA	False	NA	11	True	AATAAA	-13	NA	105591661	105592875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_105592359_105592698
transcript_38772.known	chr14	-	2084	11	FSM	ENSMUSG00000021902.8	ENSMUST00000022459.5	2084	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	8.85945822271317	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGTCTCCTTGTGAATT	NA	False	NA	-3	True	AATAAA	-14	NA	30973274	30959651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30960111_30960293_30960440_30961076_30961194_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
transcript_38774.known	chr14	-	1971	10	FSM	ENSMUSG00000021902.8	ENSMUST00000226565.2	1971	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	5.27280467453541	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTGTGAATTGGCTCT	NA	False	NA	3	True	AATAAA	-20	NA	30973272	30959645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30960111_30960293_30960440_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
transcript_38776.known	chr14	-	1382	9	FSM	ENSMUSG00000021902.8	ENSMUST00000228930.2	1382	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10.3892973775901	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCGTGCCAACAGTGGAAT	NA	False	NA	NA	False	GGGGCT	-30	NA	30972965	30959767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30960111_30960293_30960440_30961587_30961695_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
transcript_38783.known	chr14	+	3460	17	FSM	ENSMUSG00000021901.11	ENSMUST00000022458.11	3460	17	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_12	31.9899886683318	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGAGGTCGGTAGGCTGG	NA	False	NA	25	True	AATAAA	-32	NA	30973406	30981901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30978749_30979245_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
transcript_38787.nic	chr14	+	3085	17	NIC	ENSMUSG00000021901.11	novel	3460	17	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	94.0883062606613	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGGTTGCTATCTCGA	NA	False	NA	11	True	AATAAA	-18	NA	30973430	30981887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30978749_30979582_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
transcript_3879.known	chr1	+	1041	4	FSM	ENSMUSG00000026321.9	ENSMUST00000187812.2	1041	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGTTGGCTTGGTTTTT	7068	False	NA	NA	False	CATAAA	-18	NA	105708474	105742128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_105708555_105735867_105735950_105737054_105737181_105741375
transcript_38792.known	chr14	+	3855	16	FSM	ENSMUSG00000021901.11	ENSMUST00000190788.7	3855	16	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_7	25.7505986985416	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGGTTGCTATCTCGA	NA	False	NA	11	True	AATAAA	-18	NA	30973494	30981887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
transcript_388.known	chr1	-	400	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	223.143202649977	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014342	10012249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_10012375_10012547_10012617_10012834_10012943_10014244
transcript_3880.known	chr1	-	471	3	FSM	ENSMUSG00000099843.2	ENSMUST00000185535.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGATTTTAAAACAGCC	NA	False	NA	NA	False	NA	NA	NA	105918012	105907079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_105907355_105916748_105916834_105917901
transcript_38820.known	chr14	-	2897	17	FSM	ENSMUSG00000019027.9	ENSMUST00000228429.2	2897	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.2608900626145	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTGGCTGTCTTAAGTC	9881	False	NA	NA	False	NA	NA	NA	30991468	30983948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_30984241_30984369_30984541_30985075_30985253_30985324_30985505_30985806_30985978_30986271_30986404_30986479_30986639_30986867_30987013_30987219_30987417_30987835_30987988_30988271_30988468_30988596_30988823_30989411_30989573_30989668_30989819_30989942_30990063_30990741_30990868_30991326
transcript_38828.known	chr14	+	3648	21	FSM	ENSMUSG00000021893.15	ENSMUST00000022451.14	3648	21	0	0	0	0	multi-exon	TRUE	canonical	3	214	junction_6	22.7354348979737	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTAGTTTAATGTCCAG	NA	False	NA	15	True	AATAAA	-20	NA	31058594	31093941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31058941_31061991_31062101_31066398_31066557_31067415_31067484_31069614_31069816_31071755_31071843_31074323_31074451_31076051_31076138_31077221_31077316_31080562_31080710_31081163_31081271_31082081_31082203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
transcript_3883.known	chr1	-	5518	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGAATTGCAAGCCAAAC	8261	False	NA	15	True	TATAAA	-33	NA	106687457	106648188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
transcript_38833.known	chr14	+	4613	21	FSM	ENSMUSG00000021893.15	ENSMUST00000143472.8	4613	21	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_12	56.4505092979683	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAGTTTAATGTCCAGAA	NA	False	NA	17	True	AATAAA	-22	NA	31058631	31093943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31058941_31061991_31062101_31066398_31066557_31067415_31067484_31069614_31069816_31071755_31071843_31074323_31074451_31076051_31076138_31077221_31077316_31080562_31080710_31081163_31081271_31082081_31083203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
transcript_38845.known	chr14	-	2684	9	FSM	ENSMUSG00000021892.15	ENSMUST00000091903.5	2684	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	1.69096865730859	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGAAAGTCCACTGTTGT	5908	False	NA	NA	False	AATAAA	-26	NA	31158022	31095741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31097159_31097560_31097822_31099347_31099568_31100234_31100278_31101345_31101477_31109675_31109841_31133497_31133627_31156039_31156103_31157767
transcript_38850.known	chr14	+	4918	6	FSM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	16.2357629940819	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGAAT	5602	False	NA	NA	False	NA	NA	NA	31216355	31231815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31217329_31219665_31219761_31222076_31222214_31224219_31224411_31226243_31226478_31228527
transcript_38852.known	chr14	-	3946	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGTTTCTTGATGTCTT	NA	False	NA	NA	False	NA	NA	NA	31216997	31198776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
transcript_38855.known	chr14	-	2388	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228727.2	2388	5	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_4	24.3823706804732	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGACCTCTTTATATGTA	NA	False	NA	NA	False	NA	NA	NA	31216987	31203304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
transcript_38856.known	chr14	-	2644	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATTTTCCCCAGTACT	6945	False	NA	NA	False	NA	NA	NA	31362921	31329155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
transcript_38863.known	chr14	+	2324	4	FSM	ENSMUSG00000021900.11	ENSMUST00000090147.7	2324	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	7.40870359029762	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAATTATTCTGTCTGA	NA	False	NA	NA	False	AAAACA	-6	NA	31363013	31390536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31363093_31384026_31384283_31387838_31387989_31388697
transcript_38865.known	chr14	+	689	3	FSM	ENSMUSG00000021900.11	ENSMUST00000128014.2	689	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGCTAACATCCACCACC	NA	False	NA	NA	False	NA	NA	NA	31362984	31389128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31363093_31387838_31387989_31388697
transcript_38868.known	chr14	-	6712	28	FSM	ENSMUSG00000014496.9	ENSMUST00000014640.9	6712	28	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_10	15.4869740389594	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTGTCTTTCTTTTTTA	5280	False	NA	NA	False	AATAAA	-19	NA	31552608	31420724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31424264_31427221_31427314_31428746_31428830_31429160_31429244_31429959_31430106_31430706_31430791_31430874_31430963_31432708_31432929_31433015_31433134_31433885_31433974_31437190_31437393_31441297_31441373_31442062_31442090_31443802_31443915_31449591_31449733_31451841_31451911_31453985_31454050_31455640_31455724_31456928_31457044_31458716_31458796_31465179_31465393_31467177_31467321_31468869_31468958_31470599_31470801_31477689_31477761_31486210_31486290_31500878_31500963_31552283
transcript_38883.known	chr14	+	2376	8	FSM	ENSMUSG00000021906.15	ENSMUST00000022462.14	2376	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_6	23.2422908000191	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTTTAATGTTTCAG	NA	False	NA	20	True	AATACA	-19	NA	31807369	31825159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821345_31821589_31822942_31823052_31824213
transcript_38895.known	chr14	+	4086	5	FSM	ENSMUSG00000021906.15	ENSMUST00000169078.3	4086	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	99.3352908084534	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAACAGGAGCGTGTTT	NA	False	NA	NA	False	AATAAA	-10	NA	31807790	31821999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31808011_31813577_31813717_31814024_31814089_31817321_31817429_31818443
transcript_38897.known	chr14	-	2953	3	FSM	ENSMUSG00000021905.15	ENSMUST00000067955.12	2953	3	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	6	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCATGTTTTCTTGAAG	NA	False	NA	-6	True	AATAAA	-13	NA	31807566	31802525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31805204_31806863_31806939_31807366
transcript_38898.known	chr14	-	591	3	FSM	ENSMUSG00000021905.15	ENSMUST00000167796.2	591	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	281	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGTGTCTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	31807649	31804828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31805204_31806863_31806939_31807508
transcript_38899.known	chr14	-	3079	3	FSM	ENSMUSG00000021905.15	ENSMUST00000112001.9	3079	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	283	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCATGTTTTCTTGAAG	NA	False	NA	-6	True	AATAAA	-13	NA	31807566	31802525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31805204_31806863_31807065_31807366
transcript_3890.known	chr1	-	4633	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	0	0	0	0	multi-exon	TRUE	canonical	3	455	junction_4	35.0793386482699	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTATGTTTTTCGTG	24	False	NA	NA	False	ATTAAA	-5	NA	106724458	106697159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
transcript_38900.known	chr14	-	809	2	FSM	ENSMUSG00000021905.15	ENSMUST00000124303.9	809	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGGAGTCCCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	31807686	31804714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31805204_31807366
transcript_38901.known	chr14	-	751	2	FSM	ENSMUSG00000021905.15	ENSMUST00000144149.2	751	2	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCCTGAGTGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31807243	31804832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31805204_31806863
transcript_38903.known	chr14	+	4065	10	FSM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	0	0	0	0	multi-exon	TRUE	canonical	3	533	junction_6	51.0289194210886	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAAGCTATCACTTT	NA	False	NA	NA	False	NA	NA	NA	31881821	31901812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
transcript_38904.known	chr14	+	3343	10	FSM	ENSMUSG00000056234.16	ENSMUST00000111994.10	3343	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	198.662813783171	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCAGTTGTGTTTGTGTT	NA	False	NA	-2	True	ATTAAA	-13	NA	31887747	31901204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31887780_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
transcript_38912.nnic	chr14	+	2930	6	NNC	ENSMUSG00000056234.16	novel	4065	10	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	246.023088347415	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCAGTTGTGTTTGTGTT	NA	False	NA	-2	True	ATTAAA	-13	NA	31881872	31901204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_31881968_31892704_31892860_31894259_31894377_31897915_31898913_31899189_31899331_31899779
transcript_38913.known	chr14	+	4733	1	FSM	ENSMUSG00000056234.16	ENSMUST00000228143.2	4733	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GTAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AGTAAA	-14	NA	31881867	31886600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31881900_31886600
transcript_38914.known	chr14	-	1173	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	0	0	0	0	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	1565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	AATAAA	-40	NA	31923855	31902118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
transcript_38922.known	chr14	-	682	6	FSM	ENSMUSG00000013701.14	ENSMUST00000163379.2	682	6	0	0	0	0	multi-exon	FALSE	canonical	2	27	junction_4	1693.07502491768	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTAATAAGCCAGTCTGG	NA	False	NA	NA	False	NA	NA	NA	31923803	31902463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31920925_31920985_31923599
transcript_38925.known	chr14	-	777	4	FSM	ENSMUSG00000013701.14	ENSMUST00000170331.8	777	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	1998.03753718492	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTCCAAATTCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	31923826	31902247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31902628_31911100_31911212_31920925_31920985_31923599
transcript_38926.known	chr14	-	441	2	FSM	ENSMUSG00000013701.14	ENSMUST00000168813.2	441	2	0	0	0	0	multi-exon	FALSE	canonical	3	4071	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTTCCATTCTCTCTA	NA	False	NA	NA	False	NA	NA	NA	31923836	31920780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_31920985_31923599
transcript_3893.nic	chr1	-	638	4	ISM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	-12	17292	-12	-918	5prime_fragment	FALSE	canonical	3	531	junction_2	14.3836326735943	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAGAATCAACTTCAAGG	12	False	NA	NA	False	AAAAAG	-4	NA	106724470	106714451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_106714501_106717658_106717816_106719407_106719520_106724150
transcript_38934.nic	chr14	+	3829	18	NIC	ENSMUSG00000021911.17	novel	4413	18	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	1	134	junction_15	101.735663996062	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCATGCCACTTATATTT	NA	False	NA	15	True	AATAAA	-28	NA	31923879	32019177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_31924143_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
transcript_38937.known	chr14	+	4413	18	FSM	ENSMUSG00000021911.17	ENSMUST00000022470.15	4413	18	0	0	0	0	multi-exon	FALSE	canonical	1	134	junction_15	83.8243756407233	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTTAGATGCTCTGA	NA	False	NA	NA	False	AATAAA	-23	NA	31923905	32019507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31924423_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
transcript_3894.nic	chr1	-	529	3	ISM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	-12	20559	-12	1111	5prime_fragment	FALSE	canonical	3	531	junction_1	17	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAAGAAACCACAGAAGC	12	False	NA	NA	False	ACTAAA	-19	NA	106724470	106717718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_106717816_106719407_106719520_106724150
transcript_38948.nic	chr14	+	2316	10	ISM	ENSMUSG00000021911.17	ENSMUST00000163350.8	3374	17	-15	45596	-15	6958	5prime_fragment	FALSE	canonical	3	299	junction_1	61.1169694161718	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAACACTCTTCTGCTA	NA	False	NA	NA	False	NA	NA	NA	31923890	31972010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_31924423_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973
transcript_3895.known	chr1	+	666	3	FSM	ENSMUSG00000086161.2	ENSMUST00000153774.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTGAGTTCGAGGCTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	107614737	107621244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_107615059_107620098_107620191_107620991
transcript_38950.known	chr14	+	3013	9	FSM	ENSMUSG00000021911.17	ENSMUST00000164137.8	3013	9	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_1	64.7586866759974	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCATGTTTCCCCCTT	NA	False	NA	NA	False	TATAAA	-18	NA	31923905	31965052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31924423_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145
transcript_38954.known	chr14	+	804	3	FSM	ENSMUSG00000021911.17	ENSMUST00000171279.2	804	3	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	113.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATGACAACAAATTGA	NA	False	NA	NA	False	NA	NA	NA	31923927	31931190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_31924143_31930113_31930181_31930668
transcript_38962.nic	chr14	+	591	2	ISM	ENSMUSG00000021911.17	ENSMUST00000170637.2	590	3	-502	969	-15	-969	5prime_fragment	FALSE	canonical	3	299	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAAAGGTATTATATATT	NA	False	NA	NA	False	ACTAAA	-19	NA	31923890	31930172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_31924423_31930113
transcript_38963.known	chr14	-	391	2	FSM	ENSMUSG00000090459.2	ENSMUST00000169975.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGTCATTGACAAAGTTT	NA	False	NA	-13	True	ATTAAA	-17	NA	32016931	32014880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_32015223_32016882
transcript_38966.nnic	chr14	+	3873	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-241	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_1	115.755707172092	113	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043734	32070108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_32043983_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
transcript_38971.known	chr14	+	3723	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_11	40.4855688541514	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043975	32070108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
transcript_38983.nic	chr14	+	3889	23	NIC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-29	0	intron_retention	FALSE	canonical	3	463	junction_11	41.2351651260815	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043946	32070108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068811_32069462
transcript_3899.known	chr1	-	622	2	FSM	ENSMUSG00000038702.7	ENSMUST00000189370.2	622	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGCATCTGAGTCAACAG	NA	False	NA	NA	False	NA	NA	NA	111792610	111791824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_111791962_111792125
transcript_39.known	ERCC-00112	+	1120	1	FSM	ERCC-00112A	DQ459422	1120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00112_+_0_1100
transcript_390.known	chr1	-	559	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182498.8	559	3	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_2	159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014328	10012249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_10012617_10012834_10012943_10014244
transcript_3900.known	chr1	-	5759	2	FSM	ENSMUSG00000038702.7	ENSMUST00000035462.7	5759	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACGTTGTATAGTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	111792648	111786435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_111791371_111791824
transcript_39013.nic	chr14	+	1161	2	ISM	ENSMUSG00000041673.13	ENSMUST00000120866.8	1231	3	3739	0	-128	0	3prime_fragment	FALSE	canonical	3	9	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGGACTATGGTTTGG	NA	False	NA	NA	False	CATAAA	-14	NA	32717093	32731353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_32717266_32730364
transcript_39018.nic	chr14	+	2494	8	NIC	ENSMUSG00000063506.15	novel	2148	6	NA	NA	-141	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	2.66496544373966	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCGCCTGTCACCAGCC	NA	False	NA	NA	False	ATTAAA	-13	NA	33041518	33091889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_33041890_33065185_33065315_33081074_33081283_33084399_33084533_33085232_33085307_33086349_33086472_33088526_33089401_33091306
transcript_39020.nnic	chr14	+	2456	8	NNC	ENSMUSG00000063506.15	novel	2148	6	NA	NA	-55	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	6.43333157097012	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCGCCTGTCACCAGCC	NA	False	NA	NA	False	ATTAAA	-13	NA	33041604	33091889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_33041890_33065185_33065363_33081074_33081283_33084399_33084533_33085232_33085307_33086349_33086472_33088526_33089401_33091306
transcript_39022.known	chr14	-	2587	12	FSM	ENSMUSG00000021936.15	ENSMUST00000022504.12	2587	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.14655787270487	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATAGTAGCACACAGCC	NA	False	NA	NA	False	TTTAAA	-22	NA	33169102	33103005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_33104277_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112198_33112271_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
transcript_39023.known	chr14	-	1528	12	FSM	ENSMUSG00000021936.15	ENSMUST00000111944.10	1528	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.11753239990586	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCAGTGGTCATATTTTT	NA	False	NA	NA	False	TTTAAA	-4	NA	33169099	33104061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_33104277_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112629_33112702_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
transcript_39024.nic	chr14	-	2923	12	NIC	ENSMUSG00000021936.15	novel	2587	12	NA	NA	-64	254	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.14655787270487	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTCTGAAATGATGTCT	NA	False	NA	-14	True	AGTAAA	-18	NA	33169179	33102751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_33104282_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112198_33112271_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
transcript_3903.known	chr1	-	7063	6	FSM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	408.588007655633	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGTGTGTGCAAACGCA	NA	False	NA	NA	False	AATAAA	-13	NA	118239146	118222507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
transcript_39030.known	chr14	-	2811	6	FSM	ENSMUSG00000021936.15	ENSMUST00000130539.8	2811	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.72763633939717	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTCTTTTGTGAATCA	NA	False	NA	NA	False	ATTAAA	-13	NA	33169115	33112894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
transcript_39032.known	chr14	+	1880	12	FSM	ENSMUSG00000021950.16	ENSMUST00000022519.15	1880	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.55345522642137	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGTGGATTTGTGGGG	NA	False	NA	NA	False	CATAAA	-19	NA	33807937	33822528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_33808034_33811467_33811559_33812563_33812659_33813757_33813872_33814486_33814578_33815334_33815415_33815840_33815901_33816354_33816449_33816679_33816776_33818486_33818546_33819813_33819937_33821647
transcript_39033.known	chr14	+	468	1	FSM	ENSMUSG00000078126.5	ENSMUST00000104925.5	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4924	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	2274	False	NA	NA	False	NA	NA	NA	33892611	33893079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_33892600_33893100
transcript_39034.known	chr14	-	438	2	FSM	ENSMUSG00000071531.4	ENSMUST00000226511.2	438	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCGGCGTTCAGAAGCC	NA	False	NA	NA	False	NA	NA	NA	33923610	33917372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_33917775_33923574
transcript_39036.nic	chr14	-	3621	12	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	-87	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	25.9930060523281	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAAGCTTTTATTAT	NA	False	NA	-14	True	AATATA	-33	NA	34032537	33958989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_33995443_33995534_34030996_34031052_34032123
transcript_39037.known	chr14	-	3317	11	FSM	ENSMUSG00000041471.10	ENSMUST00000111917.3	3317	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	23.9376272842569	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAAGCTTTTATTAT	NA	False	NA	-14	True	AATATA	-33	NA	34032323	33958989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_34030996_34031052_34032123
transcript_39038.nic	chr14	-	3561	11	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	-93	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_8	20.0858158908221	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAAGCTTTTATTAT	NA	False	NA	-14	True	AATATA	-33	NA	34032543	33958989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33995443_33995534_34030996_34031052_34032123
transcript_39044.nic	chr14	-	2540	8	ISM	ENSMUSG00000041471.10	ENSMUST00000111917.3	3317	11	-181	8188	-54	-3917	5prime_fragment	FALSE	canonical	3	23	junction_5	25.8559589310646	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATCCTCCTTTGTCAAGA	NA	False	NA	NA	False	TTTAAA	-18	NA	34032504	33967177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_34030996_34031052_34032123
transcript_39052.nic	chr14	-	963	4	NIC	ENSMUSG00000041471.10	novel	774	3	NA	NA	-87	12	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	26.7332502076846	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCAAAAGCTTCAATGTAA	NA	False	NA	NA	False	AAGAAA	-3	NA	34032537	33990505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_33990910_33995443_33995534_34030996_34031052_34032123
transcript_39053.known	chr14	-	774	3	FSM	ENSMUSG00000041471.10	ENSMUST00000227375.2	774	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	42	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAGAAAAAGATCAAAA	NA	False	NA	NA	False	NA	NA	NA	34032450	33990517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_33990910_34030996_34031052_34032123
transcript_39063.known	chr14	+	3390	13	FSM	ENSMUSG00000021794.17	ENSMUST00000022322.17	3390	13	0	0	0	0	multi-exon	FALSE	canonical	3	1379	junction_7	93.7817723938577	655	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGTTCTCTATGGGGAC	NA	False	NA	13	True	AATAAA	-22	NA	34032683	34067222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_34033300_34041838_34041920_34043724_34043781_34047469_34047534_34051245_34051341_34056068_34056249_34057258_34057397_34058049_34058188_34058452_34058534_34060716_34060841_34061883_34061976_34064075_34064139_34065560
transcript_3908.known	chr1	-	465	3	FSM	ENSMUSG00000026374.15	ENSMUST00000188882.2	465	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	565	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGTTTAAAGAAAGGAGA	NA	False	NA	NA	False	AAGAAA	-27	NA	118238966	118236436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_118236572_118237502_118237597_118238730
transcript_39086.known	chr14	-	408	3	FSM	ENSMUSG00000043681.6	ENSMUST00000052126.6	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	2248	junction_2	168.5	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGTTTACCTCTGTT	NA	False	NA	-6	True	AATAAA	-21	NA	34077390	34073837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_34074035_34075654_34075718_34077242
transcript_39088.known	chr14	-	852	5	FSM	ENSMUSG00000023064.5	ENSMUST00000023826.5	852	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	6.72681202353685	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCTTCTTCTTTGTGC	5954	False	NA	NA	False	AATAAA	-19	NA	34096746	34092230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_34092523_34092813_34092874_34095212_34095341_34095627_34095670_34096416
transcript_39089.nnic	chr14	+	1209	3	Antisense	novelGene_ENSMUSG00000023064.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_2	2	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGGTGGTCTCGTGCCC	960	False	NA	-42	True	NA	NA	NA	34086977	34096866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr14_+_34087676_34088315_34088446_34096485
transcript_3909.known	chr1	+	1889	7	FSM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	29.1985539976821	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTGGGACTTTTTTTAA	NA	False	NA	6	True	NA	NA	NA	118249568	118261552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
transcript_39091.nnic	chr14	+	1148	3	Antisense	novelGene_ENSMUSG00000023064.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_2	2	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGATGCCTCAGTGTCCC	1074	False	NA	11	True	AAGAAA	-12	NA	34087091	34096919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr14_+_34087676_34088315_34088446_34096485
transcript_39098.nnic	chr14	+	3387	7	NNC	ENSMUSG00000041445.10	novel	3974	7	NA	NA	3059	-517	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	20.0969870599771	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAAATGA	8205	False	NA	NA	False	NA	NA	NA	34100736	34125727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_34100981_34118121_34118251_34118328_34118436_34118515_34118597_34119503_34119678_34119786_34121581_34124869
transcript_39103.known	chr14	+	3974	7	FSM	ENSMUSG00000041445.10	ENSMUST00000111908.3	3974	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	15.3260852434302	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTGTTTACTGTTG	4890	False	NA	6	True	AATAAA	-16	NA	34097421	34126244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_34097736_34118121_34118251_34118328_34118436_34118515_34118597_34119503_34119678_34119786_34121581_34124869
transcript_39107.known	chr14	-	5956	13	FSM	ENSMUSG00000021796.16	ENSMUST00000049005.15	5956	13	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_12	20.5622361516338	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCACTATTGACATTGGAA	NA	False	NA	-11	True	AATAAA	-22	NA	34224644	34132690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_34136627_34136716_34136848_34137663_34137840_34144516_34144815_34146902_34147096_34151612_34151758_34156335_34156436_34156594_34156692_34163055_34163159_34165775_34165939_34169728_34169936_34182455_34182570_34224351
transcript_39119.known	chr14	+	4185	19	FSM	ENSMUSG00000041408.19	ENSMUST00000090027.11	4185	19	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	211.44655367664	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAGCTTAGCTACTGA	NA	False	NA	NA	False	NA	NA	NA	34396129	34468037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_34396318_34398910_34399432_34413638_34414692_34416961_34417063_34444220_34444317_34446662_34446816_34447084_34447222_34447856_34447969_34451136_34451365_34452505_34452618_34453465_34453567_34455687_34455765_34458626_34458803_34459227_34459344_34459812_34459978_34461187_34461396_34463013_34463103_34466765_34466862_34467581
transcript_3912.known	chr1	+	849	6	FSM	ENSMUSG00000026377.13	ENSMUST00000112688.10	849	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	175.552157491727	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGCCAGCGTTCTGTGCA	NA	False	NA	NA	False	AAAAAG	-29	NA	118249583	118260671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_118249728_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
transcript_39129.nic	chr14	+	2336	6	ISM	ENSMUSG00000041408.19	ENSMUST00000169910.8	4066	20	-275	21214	-81	-91	5prime_fragment	FALSE	canonical	3	756	junction_1	98.8643515125649	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGATGGAGTTTTTAAGGC	NA	False	NA	NA	False	NA	NA	NA	34395803	34446695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_34396318_34398910_34399432_34413638_34414692_34416943_34417063_34444220_34444317_34446662
transcript_39130.nic	chr14	+	2427	6	ISM	ENSMUSG00000041408.19	ENSMUST00000169910.8	4066	20	-275	21123	-81	0	5prime_fragment	FALSE	canonical	3	756	junction_1	98.8643515125649	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACTGAAATGCAGAAAAGAA	NA	False	NA	NA	False	GATAAA	-45	NA	34395803	34446786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_34396318_34398910_34399432_34413638_34414692_34416943_34417063_34444220_34444317_34446662
transcript_39135.nic	chr14	+	1174	3	ISM	ENSMUSG00000041408.19	ENSMUST00000169910.8	4066	20	-275	54132	-81	-33009	5prime_fragment	FALSE	canonical	3	756	junction_1	78	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATACTTGGAACTCCCAGT	NA	False	NA	NA	False	TATAAA	-24	NA	34395803	34413777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_34396318_34398910_34399432_34413638
transcript_39136.nic	chr14	+	1825	3	ISM	ENSMUSG00000041408.19	ENSMUST00000169910.8	4066	20	-275	53481	-81	-32358	5prime_fragment	FALSE	canonical	3	756	junction_1	78	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGTTAAACTTGAATTTT	NA	False	NA	NA	False	ACTAAA	-9	NA	34395803	34414428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_34396318_34398910_34399432_34413638
transcript_39137.nic	chr14	+	1911	3	ISM	ENSMUSG00000041408.19	ENSMUST00000169910.8	4066	20	-275	53395	-81	-32272	5prime_fragment	FALSE	canonical	3	756	junction_1	78	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATATTTTGGCTTTGAC	NA	False	NA	NA	False	NA	NA	NA	34395803	34414514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_34396318_34398910_34399432_34413638
transcript_39138.nic	chr14	+	1998	3	ISM	ENSMUSG00000041408.19	ENSMUST00000169910.8	4066	20	-275	53308	-81	-32185	5prime_fragment	FALSE	canonical	3	756	junction_1	78	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTAAAACAGCTCCATCA	NA	False	NA	NA	False	NA	NA	NA	34395803	34414601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_34396318_34398910_34399432_34413638
transcript_39139.known	chr14	-	7334	10	FSM	ENSMUSG00000058690.15	ENSMUST00000067700.13	7334	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	10.4432623444526	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTCCACAGCTTGT	NA	False	NA	NA	False	AATAAA	-27	NA	36690644	36596892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_36601720_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
transcript_39143.nnic	chr14	-	2504	8	NNC	ENSMUSG00000058690.15	novel	7509	11	NA	NA	-56	2603	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	25.7119046516653	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACTATTAGAGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	36690790	36620143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_36620208_36622718_36622803_36630973_36631170_36640390_36640518_36648795_36648887_36660540_36660738_36661768_36663222_36690498
transcript_39144.nic	chr14	-	2540	8	ISM	ENSMUSG00000058690.15	ENSMUST00000090024.11	7509	11	-56	23251	-56	2603	5prime_fragment	FALSE	canonical	3	53	junction_4	8.04325043443386	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACTATTAGAGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	36690790	36620143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
transcript_39147.nic	chr14	-	2476	7	ISM	ENSMUSG00000058690.15	ENSMUST00000090024.11	7509	11	-56	25826	-56	28	5prime_fragment	FALSE	canonical	3	53	junction_3	8.49346153749394	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGCTAGGTATTTACAC	NA	False	NA	NA	False	NA	NA	NA	36690790	36622718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
transcript_3915.known	chr1	+	3829	15	FSM	ENSMUSG00000064302.14	ENSMUST00000190135.4	3829	15	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_8	20.0845153066247	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	118317186	118435306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_118317252_118347169_118347649_118387530_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582_118430729_118431549_118431686_118432625_118432697_118433211
transcript_39150.known	chr14	-	4332	17	FSM	ENSMUSG00000021803.11	ENSMUST00000022337.11	4332	17	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_16	5.32351798625683	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGACCTCCCGGTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	36820304	36799813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_36801899_36802418_36802677_36803289_36803519_36804100_36804169_36804720_36804886_36806880_36807034_36807468_36807673_36809333_36809435_36810894_36810974_36811323_36811468_36812539_36812657_36813899_36813987_36815958_36816049_36817011_36817063_36818153_36818300_36819218_36819315_36820045
transcript_39152.known	chr14	-	754	3	FSM	ENSMUSG00000096001.3	ENSMUST00000179488.3	754	3	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGAGCATCCTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	36832058	36824098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_36824649_36829330_36829412_36831935
transcript_39156.known	chr14	-	2573	9	FSM	ENSMUSG00000041028.17	ENSMUST00000042564.17	2573	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	1775.59757106587	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTATTGCTGTACTT	NA	False	NA	-18	True	AATAAA	-11	NA	36857096	36842780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856921
transcript_39157.known	chr14	-	3188	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	0	0	0	0	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTAGTTGGGTAGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	36857209	36842048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
transcript_3916.known	chr1	+	1855	12	FSM	ENSMUSG00000064302.14	ENSMUST00000189676.7	1855	12	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_8	18.8166446451667	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAATCTT	NA	False	NA	NA	False	NA	NA	NA	118317073	118430943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_118317252_118347169_118347649_118387530_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582
transcript_3918.known	chr1	-	616	1	FSM	ENSMUSG00000107722.2	ENSMUST00000203191.2	616	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAACAAAAA	1878	False	NA	NA	False	NA	NA	NA	118386997	118386381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_118386400_118387000
transcript_3919.known	chr1	+	9269	15	FSM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	0	0	0	0	multi-exon	FALSE	canonical	3	1477	junction_7	202.362891350955	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGGAACCTCAACTT	NA	False	NA	19	True	AATAAA	-20	NA	118555675	118612898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
transcript_39194.known	chr14	-	601	4	FSM	ENSMUSG00000041028.17	ENSMUST00000223921.2	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	5046	junction_1	285.925786797126	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCATTAGTCATAGATTTA	NA	False	NA	NA	False	NA	NA	NA	36857229	36853354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_36853607_36855127_36855228_36855589_36855761_36857151
transcript_39199.known	chr14	-	1597	8	FSM	ENSMUSG00000037833.15	ENSMUST00000096000.4	1597	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	5.69998209807429	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCCCCTCCTCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	40615223	40537824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_40537918_40542571_40542793_40562181_40562307_40564330_40564548_40582548_40582697_40594486_40594635_40596036_40596197_40614738
transcript_39204.known	chr14	-	1150	4	FSM	ENSMUSG00000037833.15	ENSMUST00000225854.2	1150	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	4.71404520791032	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTTGCCAATAATTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	40615223	40582339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_40582697_40594486_40594635_40596036_40596197_40614738
transcript_39215.known	chr14	-	2475	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	0	0	0	0	multi-exon	TRUE	canonical	3	610	junction_1	26.6868413267663	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTGATAAATTGAGC	NA	False	NA	49	True	ATTAAA	-18	NA	40688764	40628401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
transcript_39230.known	chr14	-	2477	8	FSM	ENSMUSG00000037824.7	ENSMUST00000224209.2	2477	8	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_1	25.0591137846786	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTTGGTGATAAATTGA	NA	False	NA	47	True	ATTAAA	-16	NA	40656278	40628403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144
transcript_39232.nic	chr14	-	1632	6	NIC	ENSMUSG00000021792.16	novel	1537	6	NA	NA	-10	0	combination_of_known_junctions	TRUE	canonical	3	24	junction_5	120.659852477947	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735755	40715696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735582
transcript_39233.known	chr14	-	1537	6	FSM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	72.4911029023562	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735732	40715696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
transcript_39235.known	chr14	-	1567	6	FSM	ENSMUSG00000021792.16	ENSMUST00000118466.8	1567	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	66.6111101844129	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735745	40715696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726178_40735654
transcript_39249.nnic	chr14	+	2193	6	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-61935	-336	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_4	8.12403840463596	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACC	NA	False	NA	NA	False	AATAAA	-15	NA	40938826	41010436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_40939274_40986925_40987404_41001646_41001810_41002809_41002942_41003619_41003802_41009645
transcript_39276.known	chr14	+	1576	5	FSM	ENSMUSG00000052334.12	ENSMUST00000064162.11	1576	5	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_2	25.043711785596	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41765951	41825778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
transcript_3928.nic	chr1	+	2420	5	ISM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	-5	29530	-4	17872	5prime_fragment	FALSE	canonical	3	1618	junction_3	162.015431363806	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAACAAAACCAATAACTAC	NA	False	NA	NA	False	NA	NA	NA	118555670	118583368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445
transcript_393.known	chr1	+	4355	30	FSM	ENSMUSG00000056763.17	ENSMUST00000071087.12	4355	30	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	28.6386316840114	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTGTCGGTTTCTTT	NA	False	NA	4	True	AATAAA	-17	NA	10108441	10206993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
transcript_39309.nnic	chr14	+	1471	4	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-45991	-29	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	7.87400787401181	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	43735041	43788641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_43735407_43783111_43783244_43783926_43784109_43787849
transcript_3931.known	chr1	+	478	3	FSM	ENSMUSG00000026380.11	ENSMUST00000190652.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	993	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGTCTTTGTAATTTTA	NA	False	NA	NA	False	NA	NA	NA	118555674	118565496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_118555833_118559971_118560124_118565328
transcript_39310.known	chr14	+	1232	3	FSM	ENSMUSG00000115050.2	ENSMUST00000228384.2	1232	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTGAAGGCTCTTATT	NA	False	NA	NA	False	ATTAAA	-30	NA	43883707	43910522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_43883838_43888015_43888461_43909865
transcript_39311.known	chr14	+	1647	1	FSM	ENSMUSG00000049235.9	ENSMUST00000094051.6	1647	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAAGAGAAAGTGGTT	NA	False	NA	NA	False	NA	NA	NA	43951188	43952835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_43951200_43952800
transcript_3932.known	chr1	-	6637	14	FSM	ENSMUSG00000048402.15	ENSMUST00000062483.15	6637	14	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_11	11.3908506833309	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATCTTGTTGATCTGCTT	1229	False	NA	-3	True	ATTAAA	-17	NA	118981349	118761861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118818025_118818132_118929769_118929937_118981031
transcript_39320.known	chr14	-	4028	21	FSM	ENSMUSG00000021830.15	ENSMUST00000022377.11	4028	21	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_1	7.23100961138899	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAGGCTGCCTTATCT	NA	False	NA	NA	False	ATTAAA	-34	NA	45456851	45371904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_45373428_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45456452_45456507_45456673
transcript_39326.known	chr14	-	4418	16	FSM	ENSMUSG00000021831.10	ENSMUST00000022378.9	4418	16	0	0	0	0	multi-exon	FALSE	canonical	2	315	junction_8	121.531596257471	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGGTCTTTGGTCAGTT	NA	False	NA	89	True	AATAAA	-20	NA	45556029	45520543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_45523546_45525189_45525324_45525432_45525520_45529818_45529889_45530387_45530635_45531760_45531854_45531967_45531995_45533428_45533441_45536502_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
transcript_39333.nic	chr14	-	738	8	ISM	ENSMUSG00000021831.10	ENSMUST00000022378.9	4418	16	5	15962	5	-395	5prime_fragment	FALSE	canonical	3	583	junction_1	35.8318066436363	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGAGTTATTTGCATCT	NA	False	NA	NA	False	NA	NA	NA	45556024	45536505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
transcript_39339.known	chr14	+	2234	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	0	0	0	0	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAATGATCCAGCTAGG	NA	False	NA	NA	False	AATAAA	-39	NA	45567244	45587162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
transcript_39352.known	chr14	+	830	8	FSM	ENSMUSG00000021832.9	ENSMUST00000227148.2	830	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	618.264556015052	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGGACTGCAACTTCCT	NA	False	NA	NA	False	AAAACA	-25	NA	45567292	45578124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_45567641_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086
transcript_39353.known	chr14	+	1730	12	FSM	ENSMUSG00000053205.10	ENSMUST00000226303.2	1730	12	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	88.5079255917908	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAAGGATAGTGTTA	NA	False	NA	NA	False	ATTAAA	-35	NA	45588678	45611758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_45588987_45592402_45592436_45594169_45594224_45595673_45595765_45596715_45596814_45604055_45604117_45605138_45605176_45605763_45605804_45605877_45605929_45608475_45608549_45609841_45609936_45610968
transcript_39356.known	chr14	+	1245	12	FSM	ENSMUSG00000053205.10	ENSMUST00000111835.4	1245	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	85.8823912334009	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAGAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	45588683	45611233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_45588987_45592402_45592436_45594169_45594224_45596715_45596814_45604055_45604117_45605138_45605176_45605763_45605804_45605877_45605929_45608475_45608549_45608725_45608862_45609841_45609936_45610968
transcript_39358.known	chr14	+	12974	11	FSM	ENSMUSG00000053205.10	ENSMUST00000226873.2	12974	11	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_6	62.4791165110391	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTTGTACATTTCTTT	NA	False	NA	NA	False	AATAAA	-37	NA	45588549	45622964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_45588987_45592402_45592436_45594169_45594224_45596715_45596814_45604055_45604117_45605138_45605176_45605763_45605804_45605877_45605929_45608475_45608549_45609841_45609936_45610968
transcript_3936.known	chr1	-	4255	2	FSM	ENSMUSG00000037035.6	ENSMUST00000038765.6	4255	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGCCTTGTGTGATG	NA	False	NA	-3	True	AATAAA	-17	NA	119349978	119343194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_119345828_119348356
transcript_39364.known	chr14	-	710	7	FSM	ENSMUSG00000037722.9	ENSMUST00000226276.2	710	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	556.682260260635	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTAAATAACTGTTTTAG	NA	False	NA	NA	False	AGTAAA	-29	NA	45626250	45615766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45619469_45619536_45620850_45620914_45622037_45622206_45626204
transcript_39365.known	chr14	-	2788	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	0	0	0	0	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGATCCATCAGGTAAC	NA	False	NA	NA	False	ATTAAA	-11	NA	45626418	45613790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
transcript_39382.known	chr14	-	3293	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCTTTTGTACTTCTG	NA	False	NA	-5	True	AATAAA	-20	NA	45767575	45696251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
transcript_39383.known	chr14	-	3573	15	FSM	ENSMUSG00000037697.20	ENSMUST00000149286.9	3573	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	42.5544668990369	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCACTAGTTCAATTATT	NA	False	NA	56	True	ATTAAA	-14	NA	45895555	45832182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45860297_45860351_45866310_45866332_45867036_45867211_45894678
transcript_39386.known	chr14	-	9820	14	FSM	ENSMUSG00000037697.20	ENSMUST00000087320.13	9820	14	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_12	30.2633412313513	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTCTTGTGTGCTTTCGG	NA	False	NA	NA	False	ATTAAA	-14	NA	45895518	45825926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45860297_45860400_45867036_45867211_45894678
transcript_39388.known	chr14	-	9802	13	FSM	ENSMUSG00000037697.20	ENSMUST00000111828.4	9802	13	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_11	14.0049594390305	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGTGTGCTTTCGGGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	45895599	45825923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45867036_45867211_45894678
transcript_39391.known	chr14	-	5012	12	FSM	ENSMUSG00000037697.20	ENSMUST00000051310.13	5012	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	31.1368613098913	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGCTGAGTCTCTTGAG	NA	False	NA	-3	True	ATTAAA	-20	NA	45895600	45830630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_45833122_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168_45858298_45867036_45867211_45894678
transcript_39396.nnic	chr14	+	731	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-1	-15	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCAAGAAGGTGGACTC	NA	False	NA	NA	False	AATAAA	-45	NA	46321483	46322442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_46321631_46321858
transcript_39397.known	chr14	+	750	2	FSM	ENSMUSG00000044285.9	ENSMUST00000227415.2	750	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTCCAGAAAATCAAATAA	NA	False	NA	NA	False	NA	NA	NA	46321484	46322457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_46321774_46321996
transcript_39398.known	chr14	-	2064	4	FSM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	6.0184900284226	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGACCTTTCTATCTTAT	6365	False	NA	NA	False	AATAAA	-25	NA	46628126	46620976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_46622170_46623171_46623552_46624612_46624738_46627760
transcript_39399.known	chr14	+	1726	1	FSM	ENSMUSG00000086746.3	ENSMUST00000228667.2	1726	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTCATCTCCTGGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	46625009	46626735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_46625000_46626700
transcript_39400.known	chr14	+	917	8	FSM	ENSMUSG00000037628.11	ENSMUST00000067426.6	917	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	72.4563204099335	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCAGCTAGACATACACT	NA	False	NA	72	True	NA	NA	NA	46997997	47009126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007292_47007394_47008857
transcript_39403.known	chr14	+	634	7	FSM	ENSMUSG00000037628.11	ENSMUST00000226621.2	634	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	78.2254576351089	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAGTTCTCCAGCATAG	NA	False	NA	2	True	AATAAA	-17	NA	46998051	47008977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_46998106_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
transcript_39405.known	chr14	-	1538	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	0	0	0	0	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTACATTGTCTATTTTC	NA	False	NA	NA	False	AATAAA	-31	NA	47025868	47013023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
transcript_39410.known	chr14	-	4171	7	FSM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	212.21091447478	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTTTTATTTTTT	NA	False	NA	-2	True	AATAAA	-18	NA	47059699	47045605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
transcript_39417.known	chr14	-	280	3	FSM	ENSMUSG00000062014.14	ENSMUST00000228065.2	280	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	282	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGCACTGTTACTTA	NA	False	NA	-2	True	CATAAA	-15	NA	47059613	47049130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47049281_47051700_47051775_47059557
transcript_39418.known	chr14	+	1324	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	10.2097992144802	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGACACTGTCTTTGTC	537	False	NA	14	True	AATAAA	-24	NA	47069581	47091650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
transcript_39419.known	chr14	+	873	4	FSM	ENSMUSG00000055128.16	ENSMUST00000133989.8	873	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	7.78888096369861	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTTATCCTTCTGTGG	641	False	NA	NA	False	ATTAAA	-18	NA	47069685	47084045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641
transcript_39421.known	chr14	+	419	2	FSM	ENSMUSG00000055128.16	ENSMUST00000140114.3	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGTAGACGTGAAGATGA	631	False	NA	NA	False	ATTAAA	-23	NA	47069675	47077871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47069837_47077613
transcript_39422.known	chr14	+	4165	12	FSM	ENSMUSG00000021838.18	ENSMUST00000100672.11	4165	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.833195580901062	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGTG	NA	False	NA	NA	False	AGTAAA	-22	NA	47120445	47340607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47120626_47121855_47122474_47253733_47254253_47301676_47301787_47303844_47303932_47311292_47311606_47314963_47315050_47320953_47321073_47325215_47325418_47326500_47326628_47333547_47333632_47338887
transcript_39423.known	chr14	-	2775	6	FSM	ENSMUSG00000037580.11	ENSMUST00000089959.7	2775	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	5.3665631459995	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTGGATGTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	47426870	47391351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47393382_47394865_47394951_47396319_47396352_47403932_47403989_47406668_47406779_47426408
transcript_39427.known	chr14	-	4174	25	FSM	ENSMUSG00000037572.18	ENSMUST00000111792.9	4174	25	0	0	0	0	multi-exon	FALSE	canonical	1	22	junction_16	87.7556582537876	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTTGCTATGGTTT	NA	False	NA	0	True	AATAAA	-20	NA	47514314	47478400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504520_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
transcript_39428.known	chr14	-	4260	25	FSM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	0	0	0	0	multi-exon	FALSE	canonical	1	98	junction_11	68.6814304516795	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTTGCTATGGTTT	NA	False	NA	0	True	AATAAA	-20	NA	47514289	47478400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
transcript_39433.nnic	chr14	-	4116	24	NIC	ENSMUSG00000037572.18	novel	4260	25	NA	NA	-2	0	intron_retention	FALSE	canonical	1	7	junction_3	89.0967486714219	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTTGCTATGGTTT	NA	False	NA	0	True	AATAAA	-20	NA	47514316	47478400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_47479270_47481259_47481399_47482441_47482570_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
transcript_39441.nic	chr14	-	3514	23	ISM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	-362	4141	-337	-3553	5prime_fragment	FALSE	canonical	1	98	junction_9	70.6028497774291	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCCACAGGCTGATAAG	NA	False	NA	NA	False	NA	NA	NA	47514651	47482541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
transcript_39445.nic	chr14	-	3106	22	ISM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	-27	4388	-2	-3800	5prime_fragment	FALSE	canonical	1	98	junction_8	70.9546500116563	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAGTTATAAAGCCTCT	NA	False	NA	NA	False	AATGAA	-4	NA	47514316	47482788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
transcript_39452.nic	chr14	-	2764	18	ISM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	-33	7063	-8	2840	5prime_fragment	FALSE	canonical	1	98	junction_4	61.9867158444168	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATGCTGGGTAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	47514322	47485463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
transcript_39454.known	chr14	-	2962	14	FSM	ENSMUSG00000037572.18	ENSMUST00000111790.2	2962	14	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	24.3235099460311	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAGAATATAAAAA	NA	False	NA	NA	False	NA	NA	NA	47514289	47495135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
transcript_39457.known	chr14	+	6877	2	FSM	ENSMUSG00000048379.10	ENSMUST00000065562.6	6877	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCGTTTTTAAAGAT	NA	False	NA	NA	False	AATAAA	-28	NA	47514387	47533559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47514679_47526973
transcript_39468.nnic	chr14	+	4547	5	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	-47	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	99.1548662446781	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCATGGTTTCTTTGTG	9580	False	NA	2	True	AAGAAA	-13	NA	47535675	47560547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868_47557380_47557419
transcript_39473.known	chr14	+	4542	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTCTTTGTGTATTT	9630	False	NA	7	True	AAGAAA	-18	NA	47535725	47560552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
transcript_39477.known	chr14	+	1419	6	FSM	ENSMUSG00000050335.18	ENSMUST00000142734.8	1419	6	0	0	0	0	multi-exon	TRUE	canonical	3	33	junction_1	23.7941169199447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAGGAAATACGCTGAAT	NA	False	NA	NA	False	AATAAA	-15	NA	47611269	47623617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47611410_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
transcript_39479.known	chr14	+	1298	6	FSM	ENSMUSG00000050335.18	ENSMUST00000150290.9	1298	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	20.2286924935845	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCCCTTTGATTTGGTG	NA	False	NA	NA	False	NA	NA	NA	47611345	47623545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47611437_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
transcript_39480.nic	chr14	-	2737	19	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_10	111.61232785134	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCTTCGCATTGTTA	NA	False	NA	NA	False	NA	NA	NA	47655673	47625235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643323_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
transcript_39483.known	chr14	-	2964	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCTTCGCATTGTTA	NA	False	NA	NA	False	NA	NA	NA	47655864	47625235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
transcript_39489.nic	chr14	-	2769	18	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_1	102.855729242771	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAACATTCTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	47655729	47625244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_47625577_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
transcript_39490.known	chr14	-	4067	17	FSM	ENSMUSG00000037544.15	ENSMUST00000180299.8	4067	17	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_10	53.3282508971558	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATACAAGCCGG	NA	False	NA	NA	False	AATAAA	-9	NA	47655634	47626174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
transcript_3950.known	chr1	-	2289	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	0	0	0	0	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	4100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCCCTTTTTCCTGCAT	NA	False	NA	-4	True	AATAAA	-21	NA	119432524	119398034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
transcript_39503.known	chr14	-	577	3	FSM	ENSMUSG00000037544.15	ENSMUST00000178773.2	577	3	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	48	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCGATATT	NA	False	NA	NA	False	AATAGA	-27	NA	47655657	47651047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47651297_47653792_47654029_47655565
transcript_39506.nic	chr14	+	3275	5	NIC	ENSMUSG00000037536.15	novel	3418	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_3	35.4436171968946	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCTGGTCTTAAAATA	NA	False	NA	10	True	AATAAA	-18	NA	47710017	47769415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_47710175_47738250_47738328_47742442_47742590_47763661_47763772_47766631
transcript_39511.known	chr14	+	664	4	FSM	ENSMUSG00000037536.15	ENSMUST00000228668.2	664	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	28.4526897771644	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAACCTGGGAACACG	NA	False	NA	NA	False	GGGGCT	-18	NA	47710032	47766966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47710175_47738250_47738328_47763661_47763772_47766631
transcript_39513.known	chr14	+	2993	3	FSM	ENSMUSG00000037536.15	ENSMUST00000168833.9	2993	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	10.5	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCTGGTCTTAAAATA	NA	False	NA	10	True	AATAAA	-18	NA	47710075	47769415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47710175_47763661_47763772_47766631
transcript_39514.known	chr14	+	373	3	FSM	ENSMUSG00000037536.15	ENSMUST00000227162.2	373	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	19	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAAGCATCGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	47710045	47766798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47710175_47738250_47738328_47766631
transcript_39515.known	chr14	+	393	3	FSM	ENSMUSG00000037536.15	ENSMUST00000227601.2	393	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACATGAAACCCACCGTC	NA	False	NA	NA	False	NA	NA	NA	47710059	47766762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47710175_47742442_47742590_47766631
transcript_39517.known	chr14	+	2937	2	FSM	ENSMUSG00000037536.15	ENSMUST00000043112.9	2937	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGAGGTCTGGTCTTAA	NA	False	NA	6	True	AATAAA	-14	NA	47710017	47769411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47710175_47766631
transcript_39522.nnic	chr14	-	4040	13	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6187	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	53.9554214143491	113	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGCTGTGTGTGTCTGT	NA	False	NA	-5	True	AATAAA	-13	NA	47814293	47778350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47812373_47812595_47813988_47814069_47814201
transcript_39523.nnic	chr14	-	3819	12	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6187	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_10	46.0637359383175	119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGCTGTGTGTGTCTGT	NA	False	NA	-5	True	AATAAA	-13	NA	47814293	47778350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47813988_47814069_47814201
transcript_39527.known	chr14	-	3450	10	FSM	ENSMUSG00000037526.8	ENSMUST00000042988.7	3450	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	17.6572301841987	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGCTGTGTGTGTCTGT	NA	False	NA	-5	True	AATAAA	-13	NA	47805891	47778350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642
transcript_39550.nic	chr14	+	4445	39	NIC	ENSMUSG00000021843.18	novel	4298	40	NA	NA	-184	0	combination_of_known_junctions	TRUE	canonical	3	354	junction_31	131.105569523613	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTCTGATTGTCGTTGA	NA	False	NA	24	True	AATAAA	-24	NA	47886583	47974021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
transcript_3956.known	chr1	-	2742	2	FSM	ENSMUSG00000004451.15	ENSMUST00000156213.2	2742	2	0	0	0	0	multi-exon	FALSE	canonical	3	967	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	119432524	119408862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_119411387_119432306
transcript_3957.known	chr1	-	607	4	FSM	ENSMUSG00000098447.3	ENSMUST00000185095.3	607	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	4.32049379893857	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGATTTGAATCCCTTCT	NA	False	NA	NA	False	NA	NA	NA	119454089	119447819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_119447988_119448121_119448209_119448474_119448600_119453862
transcript_3958.known	chr1	+	681	2	FSM	ENSMUSG00000098923.2	ENSMUST00000183607.2	681	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTTACATTTCCATTT	NA	False	NA	NA	False	NA	NA	NA	119453902	119454959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_119454278_119454653
transcript_39582.nic	chr14	+	3075	27	ISM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	-172	29276	-172	2844	5prime_fragment	FALSE	canonical	3	462	junction_23	103.704953862491	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTTTTTAGCTAACA	NA	False	NA	NA	False	NA	NA	NA	47886595	47944738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698
transcript_39586.nic	chr14	+	2834	26	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	0	2844	combination_of_known_junctions	FALSE	canonical	3	256	junction_23	121.609565413252	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTTTTTAGCTAACA	NA	False	NA	NA	False	NA	NA	NA	47886767	47944738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698
transcript_39595.nic	chr14	+	2535	18	ISM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	-194	40986	-194	-8866	5prime_fragment	FALSE	canonical	3	499	junction_2	90.6214606754278	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCTTGTGTGGGTAGTG	NA	False	NA	NA	False	NA	NA	NA	47886573	47933028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959
transcript_39596.nic	chr14	+	2315	18	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	-24	-8866	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	160.710834477141	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCTTGTGTGGGTAGTG	NA	False	NA	NA	False	NA	NA	NA	47886743	47933028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959
transcript_39602.nic	chr14	+	1300	7	ISM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	-8	59830	-8	12412	5prime_fragment	FALSE	canonical	3	499	junction_2	63.6799724315965	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGAAAGATCGGATTGGA	NA	False	NA	NA	False	AAGAAA	-22	NA	47886759	47914184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141
transcript_39606.nic	chr14	+	1451	6	ISM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	-202	61691	-202	10551	5prime_fragment	FALSE	canonical	3	499	junction_2	68.4122795994988	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAGACATTCTTCAGTTC	NA	False	NA	NA	False	NA	NA	NA	47886565	47912323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206
transcript_39607.nic	chr14	+	1199	6	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	0	10551	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	206.816440352309	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAGACATTCTTCAGTTC	NA	False	NA	NA	False	NA	NA	NA	47886767	47912323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206
transcript_39610.nic	chr14	+	974	4	ISM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	-10	66296	-10	5946	5prime_fragment	FALSE	canonical	3	499	junction_2	54.4691553898983	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTGGAACAAAAAAGCTGAA	NA	False	NA	NA	False	ATTAAA	-28	NA	47886757	47907718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581
transcript_39617.nic	chr14	+	726	2	ISM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	-367	72572	-367	-330	5prime_fragment	FALSE	canonical	3	625	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGAATGGGACCCTTCGT	NA	False	NA	NA	False	AAAACA	-44	NA	47886400	47901442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_47886897_47901212
transcript_39618.nic	chr14	+	710	2	ISM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	-184	72405	-184	-163	5prime_fragment	FALSE	canonical	3	625	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTTGAAGAGCAGGT	NA	False	NA	NA	False	AAGAAA	-23	NA	47886583	47901609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_47886897_47901212
transcript_39619.known	chr14	+	634	2	FSM	ENSMUSG00000021843.18	ENSMUST00000186466.3	634	2	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACATAATCTTTTTAACTC	NA	False	NA	NA	False	AAGAAA	-32	NA	47886772	47901772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_47886847_47901212
transcript_3962.known	chr1	-	6442	25	FSM	ENSMUSG00000026383.15	ENSMUST00000052404.13	6442	25	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_7	8.61674322983393	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATGTTTTATGAGCTGT	NA	False	NA	-11	True	AATAAA	-13	NA	119576666	119472766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
transcript_39627.known	chr14	+	5900	6	FSM	ENSMUSG00000021846.10	ENSMUST00000073150.6	5900	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	6.58483105326173	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTATTGGTGCTTTTTTTT	NA	False	NA	11	True	ATTAAA	-24	NA	48358279	48498345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_48358691_48405653_48405784_48477666_48477769_48487966_48488162_48490033_48490223_48493472
transcript_39629.known	chr14	+	3527	5	FSM	ENSMUSG00000021846.10	ENSMUST00000226828.2	3527	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	29.5972971738975	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGTTTTGTTTTTCA	NA	False	NA	NA	False	ATTAAA	-13	NA	48358325	48496148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_48358691_48477666_48477769_48487966_48488162_48490033_48490223_48493472
transcript_39631.known	chr14	+	5485	16	FSM	ENSMUSG00000036339.19	ENSMUST00000111735.10	5485	16	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_12	6.92306932573182	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACGAATCCTAT	NA	False	NA	NA	False	AAGAAA	-27	NA	48683838	48752913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_48684061_48688599_48688632_48689362_48689515_48709780_48709959_48711422_48711537_48714971_48715152_48717760_48717802_48720706_48720791_48722395_48722511_48724197_48724368_48733748_48733921_48737463_48737613_48742701_48742879_48744599_48744654_48746491_48746583_48749359
transcript_39639.known	chr14	+	2281	1	FSM	ENSMUSG00000036339.19	ENSMUST00000226400.2	2281	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTTAAGTTTTCCTCTA	NA	False	NA	NA	False	AATAAA	-20	NA	48683753	48686034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_48683800_48686000
transcript_39642.known	chr14	-	2144	4	FSM	ENSMUSG00000021848.17	ENSMUST00000118578.9	2144	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	16.8720676464584	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGGGTCTAGTTTAAT	NA	False	NA	-3	True	ATTAAA	-14	NA	48902563	48895135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_48896784_48898755_48898908_48899900_48900117_48902435
transcript_39648.known	chr14	-	1737	3	FSM	ENSMUSG00000021848.17	ENSMUST00000122009.8	1737	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	5.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACCGCTCATACGGAGTC	NA	False	NA	NA	False	TTTAAA	-13	NA	48900329	48895627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_48896784_48898755_48898908_48899900
transcript_3965.known	chr1	-	3370	25	FSM	ENSMUSG00000026383.15	ENSMUST00000163147.8	3370	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	20.0580754034102	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATAATG	NA	False	NA	NA	False	TTTAAA	-37	NA	119576664	119475860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527992_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
transcript_39655.known	chr14	-	12699	18	FSM	ENSMUSG00000061244.15	ENSMUST00000162175.9	12699	18	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_14	16.0953043938104	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAATAAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	49304110	49241546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_49251807_49252873_49253090_49253654_49253764_49254930_49255018_49256858_49256980_49260655_49260765_49270727_49270876_49272264_49272475_49273455_49273539_49274215_49274357_49274460_49274506_49275129_49275240_49276811_49276841_49279941_49280007_49286160_49286356_49288776_49288925_49289754_49289850_49303582
transcript_3966.known	chr1	-	10874	27	FSM	ENSMUSG00000026384.14	ENSMUST00000064091.12	10874	27	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_24	12.095832819514	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCGTTTCAAGGTTCT	NA	False	NA	0	True	AATAAA	-21	NA	119765343	119580196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_119587648_119595243_119595380_119603278_119603428_119606484_119606614_119607778_119607926_119610213_119610276_119610434_119610526_119612196_119612364_119615339_119615497_119619330_119619388_119619475_119619560_119620479_119620640_119633884_119634044_119635505_119635632_119643676_119643746_119649593_119649767_119653762_119653827_119669084_119669174_119671081_119671170_119692760_119692882_119693158_119693212_119693607_119693653_119700778_119700858_119700958_119701002_119711211_119711320_119730052_119730208_119764631
transcript_39663.known	chr14	-	2582	17	FSM	ENSMUSG00000061244.15	ENSMUST00000161504.8	2582	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	42.4852456006788	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAATTTTCAGTGCTGG	NA	False	NA	NA	False	AGTAAA	-28	NA	49303853	49251211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_49251807_49252873_49253090_49253654_49253764_49254930_49255018_49256858_49256980_49260655_49260765_49270727_49270876_49272264_49272475_49273455_49273539_49274215_49274357_49274460_49274506_49275129_49275240_49276811_49276841_49279941_49280007_49288776_49288925_49289754_49289850_49303582
transcript_39666.known	chr14	+	2544	9	FSM	ENSMUSG00000036291.7	ENSMUST00000227410.2	2544	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	33.1200467994838	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCTGTGGGTATCATT	NA	False	NA	NA	False	AATAAA	-42	NA	49303987	49324822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_49304322_49311005_49311200_49311426_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
transcript_39669.nic	chr14	+	2370	9	NIC	ENSMUSG00000036291.7	novel	2544	9	NA	NA	-6	0	intron_retention	FALSE	canonical	3	13	junction_8	38.1042976578758	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATGATTTCTTATGCT	NA	False	NA	NA	False	AATAAA	-9	NA	49303981	49328255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701_49323817_49327656
transcript_39671.known	chr14	+	6321	8	FSM	ENSMUSG00000036291.7	ENSMUST00000037473.6	6321	8	0	0	0	0	multi-exon	TRUE	canonical	3	109	junction_2	12.7487494384703	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATAAATTTGTGACATAA	NA	False	NA	NA	False	NA	NA	NA	49303951	49328336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
transcript_39681.known	chr14	+	3514	2	FSM	ENSMUSG00000036291.7	ENSMUST00000228238.2	3514	2	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAGAAGTTAGAAA	NA	False	NA	NA	False	ATTAAA	-38	NA	49303952	49314150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_49304322_49311005
transcript_39686.known	chr14	+	4446	5	FSM	ENSMUSG00000036282.16	ENSMUST00000153488.9	4446	5	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	37.2458051329274	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACAGCTGTGTGCATTCT	NA	False	NA	37	True	AATAAA	-34	NA	49409682	49428342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_49409835_49410072_49410851_49415508_49415633_49418162_49418219_49425006
transcript_39691.known	chr14	-	3100	8	FSM	ENSMUSG00000036242.16	ENSMUST00000118129.2	3100	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	11.3730795642829	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTTATGCTTGCTTTCT	NA	False	NA	NA	False	CATAAA	-10	NA	50020828	49919124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_49919871_49920068_49920204_49926723_49926756_49988875_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
transcript_39699.known	chr14	-	8831	8	FSM	ENSMUSG00000036242.16	ENSMUST00000036972.14	8831	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	7.71693076346829	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGTTTCTTCAATTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	50020840	49913408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_49919874_49920068_49920204_49926723_49926756_49988875_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
transcript_39705.known	chr14	-	1842	10	FSM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	0	0	0	0	multi-exon	FALSE	canonical	3	788	junction_6	38.5313724991294	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTATAGTTCTGTCTCTTT	NA	False	NA	-6	True	ATTAAA	-21	NA	51022976	51002871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
transcript_39723.known	chr14	-	2366	4	FSM	ENSMUSG00000006288.9	ENSMUST00000226768.2	2366	4	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_3	1.69967317119759	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGAGAGCTGCTGGTCG	NA	False	NA	-1	True	AATAAA	-18	NA	51022952	51012906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51014870_51015213_51015426_51018931_51019065_51022894
transcript_39727.known	chr14	-	2058	3	FSM	ENSMUSG00000006288.9	ENSMUST00000227934.2	2058	3	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAGGAAAAAGAAAAAAGGC	NA	False	NA	NA	False	NA	NA	NA	51022950	51013556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51015426_51018931_51019065_51022894
transcript_3973.known	chr1	-	3341	2	FSM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCAGCCTTAAGTTTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	119840938	119835619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_119838885_119840862
transcript_39732.nnic	chr14	-	3919	5	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	-2344	-4	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	80.7971998277168	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTCTTTT	6532	False	NA	-3	True	AATAAA	-16	NA	51035529	51026708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_51027470_51027592_51027663_51029429_51029764_51031014_51031332_51033092
transcript_39734.known	chr14	-	1509	4	FSM	ENSMUSG00000071470.5	ENSMUST00000095932.5	1509	4	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	17.4419672692682	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTCTTTTCTTTTTGGC	8876	False	NA	1	True	AATAAA	-20	NA	51033185	51026704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51027470_51029429_51029764_51031014_51031332_51033092
transcript_39735.nnic	chr14	-	1466	4	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	82.8908251188809	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTTCTTTTCTTTTT	8877	False	NA	-2	True	AATAAA	-17	NA	51033184	51026707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_51027470_51029468_51029764_51031014_51031332_51033092
transcript_39737.known	chr14	-	319	1	FSM	ENSMUSG00000092837.3	ENSMUST00000175096.3	319	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTTTGATCGAGATCC	5444	False	NA	NA	False	NA	NA	NA	51045224	51044905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51044900_51045200
transcript_39743.known	chr14	+	1894	16	FSM	ENSMUSG00000036023.7	ENSMUST00000036126.7	1894	16	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_5	52.2695577431708	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCTTCTTTGGGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	51045297	51058758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
transcript_39749.known	chr14	+	2173	15	FSM	ENSMUSG00000036023.7	ENSMUST00000228672.2	2173	15	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	45.539397610134	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045402	51058757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
transcript_3975.known	chr1	-	1311	2	FSM	ENSMUSG00000050777.8	ENSMUST00000056089.8	1311	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCCTATGACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	120001804	119995106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_119996055_120001441
transcript_3976.known	chr1	-	491	4	FSM	ENSMUSG00000026385.17	ENSMUST00000151708.3	491	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1290.6796659125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAATGTAGATGATATGG	NA	False	NA	-121	True	NA	NA	NA	120048667	120041129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048491
transcript_3977.known	chr1	-	569	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	0	0	0	0	multi-exon	FALSE	canonical	3	2709	junction_1	24.2532930181083	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGTTGTCTGGGTGCGT	NA	False	NA	-1	True	ATTAAA	-29	NA	120048808	120041009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
transcript_39770.known	chr14	+	1756	5	FSM	ENSMUSG00000036023.7	ENSMUST00000226880.2	1756	5	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_2	46.9381241636263	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCTGACTGAGTCAGGG	NA	False	NA	NA	False	NA	NA	NA	51045381	51053756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326
transcript_39772.known	chr14	-	8171	55	FSM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_54	10.7386492216491	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATGCCCGATTGTGTTC	NA	False	NA	-4	True	TATAAA	-24	NA	51108017	51061515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328_51067406_51067586_51067720_51069188_51069297_51070910_51071025_51071370_51071535_51073448_51073662_51073766_51073921_51074141_51074355_51074494_51074651_51074836_51074937_51075040_51075166_51075980_51076099_51076402_51076644_51078038_51078154_51078425_51078515_51078666_51078801_51079013_51079165_51079321_51079455_51080633_51080727_51081162_51081343_51081479_51081637_51081711_51081888_51081990_51082186_51082308_51082427_51082516_51082631_51082872_51082998_51083931_51084053_51084289_51084467_51085070_51085230_51087490_51087551_51088043_51088175_51089378_51089457_51090433_51090593_51091006_51091176_51091584_51091772_51091965_51092057_51093046_51093157_51098034_51098193_51098380_51098506_51099939_51100018_51100310_51100473_51100958_51101121_51103406_51103542_51104145_51104326_51105451_51106043_51107869
transcript_39773.nic	chr14	-	1490	10	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	40493	0	4	0	3prime_fragment	FALSE	canonical	3	29	junction_7	7.57187779440036	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATGCCCGATTGTGTTC	NA	False	NA	-4	True	TATAAA	-24	NA	51067524	51061515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328
transcript_39777.known	chr14	-	3388	11	FSM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_9	170.895289578151	640	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGCACTTACAGAGGACT	NA	False	NA	NA	False	ACTAAA	-37	NA	51162350	51151050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
transcript_39790.known	chr14	-	2755	7	FSM	ENSMUSG00000035953.15	ENSMUST00000160835.9	2755	7	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_6	55.5447767321305	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGTGTCCGTTAGTCAC	NA	False	NA	NA	False	TATAAA	-16	NA	51168306	51163524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168069
transcript_39791.known	chr14	-	1594	7	FSM	ENSMUSG00000035953.15	ENSMUST00000049312.14	1594	7	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	212.437441772082	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168313	51164671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168090
transcript_39795.known	chr14	-	1465	6	FSM	ENSMUSG00000035953.15	ENSMUST00000162957.8	1465	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	295.870647412007	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168269	51164671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51167040_51167148_51167590_51167782_51168069
transcript_39796.known	chr14	-	1445	6	FSM	ENSMUSG00000035953.15	ENSMUST00000161166.8	1445	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	330.807859640608	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168270	51164671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51167040_51167148_51167590_51167782_51168090
transcript_39797.nic	chr14	-	1823	6	NIC	ENSMUSG00000035953.15	novel	1594	7	NA	NA	-65	0	intron_retention	FALSE	canonical	3	698	junction_5	55.1049906995728	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168378	51164671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_51165495_51166277_51166369_51166462_51166765_51167040_51167148_51167590_51167782_51168069
transcript_39804.known	chr14	+	655	5	FSM	ENSMUSG00000035960.15	ENSMUST00000136753.8	655	5	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	445.940298694792	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTAAGACTGGAATACCGA	180	False	NA	NA	False	NA	NA	NA	51162425	51164008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_51162492_51162669_51162782_51162973_51163162_51163617_51163811_51163912
transcript_39810.known	chr14	-	762	5	FSM	ENSMUSG00000035953.15	ENSMUST00000163088.8	762	5	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_4	55.3398590529466	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCACAGGTCATCTATT	NA	False	NA	NA	False	CATAAA	-37	NA	51168290	51166378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168069
transcript_39812.known	chr14	-	877	5	FSM	ENSMUSG00000035953.15	ENSMUST00000160538.2	877	5	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_4	46.0570298651574	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGTGAGTAGCCTCAAT	NA	False	NA	NA	False	NA	NA	NA	51168260	51166282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51166369_51166462_51166765_51167040_51167148_51167590_51167782_51168069
transcript_3982.known	chr1	+	488	6	FSM	ENSMUSG00000026388.16	ENSMUST00000112644.9	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	7.2773621594641	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTGATTTATCTCTA	NA	False	NA	15	True	AATAAA	-16	NA	120048924	120115919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120099130_120099213_120115770
transcript_39824.known	chr14	-	3232	3	FSM	ENSMUSG00000035953.15	ENSMUST00000159745.2	3232	3	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_2	283	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTTTCCCACTTAACAAC	NA	False	NA	-11	True	AATAAA	-16	NA	51168308	51164673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51166369_51166462_51167782_51168090
transcript_39825.known	chr14	-	735	3	FSM	ENSMUSG00000035953.15	ENSMUST00000163043.2	735	3	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_2	41.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACATACTTTTCCCCC	NA	False	NA	NA	False	AATAGA	-12	NA	51168257	51166791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51167148_51167590_51167782_51168069
transcript_39828.known	chr14	+	2942	6	FSM	ENSMUSG00000115338.3	ENSMUST00000048615.13	2942	6	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	38.2015706483385	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAACCATGAAGGATCAGG	9030	False	NA	NA	False	NA	NA	NA	51181758	51190869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188288_51188480_51188860
transcript_39829.known	chr14	+	1372	6	FSM	ENSMUSG00000068417.9	ENSMUST00000095925.5	1372	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	36.6911433454996	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGACTTGCTTGTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	51193448	51202206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_51193686_51196971_51197142_51200561_51200666_51200846_51201023_51201135_51201327_51201712
transcript_39830.known	chr14	+	728	2	FSM	ENSMUSG00000072115.12	ENSMUST00000171688.9	728	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCAGTCTGGAAGATCAC	NA	False	NA	NA	False	AATAAA	-21	NA	51328606	51339466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_51328711_51338842
transcript_39831.known	chr14	-	992	2	FSM	ENSMUSG00000035896.6	ENSMUST00000080126.4	992	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTAGCCATAGCTCCCA	NA	False	NA	NA	False	AATAAA	-21	NA	51384242	51382454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_51383377_51384172
transcript_39834.known	chr14	+	1623	14	FSM	ENSMUSG00000004561.15	ENSMUST00000047899.13	1623	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	48.1261901412816	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	AATAAA	-16	NA	52122298	52129325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_39837.known	chr14	+	1461	13	FSM	ENSMUSG00000004561.15	ENSMUST00000164902.8	1461	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	49.8556248916141	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGATGTAGAACAAGTGT	NA	False	NA	NA	False	NA	NA	NA	52122402	52129192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823
transcript_39839.known	chr14	+	1430	13	FSM	ENSMUSG00000004561.15	ENSMUST00000165100.8	1430	13	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_7	37.728102552636	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCAGGAAGAGAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	52122345	52129250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_3984.known	chr1	+	401	5	FSM	ENSMUSG00000026388.16	ENSMUST00000056038.15	401	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	17.3835410661925	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTGATTTATCTCTA	NA	False	NA	15	True	AATAAA	-16	NA	120048929	120115919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120115770
transcript_39842.nic	chr14	+	1760	13	NIC	ENSMUSG00000004561.15	novel	1844	13	NA	NA	-62	0	intron_retention	FALSE	canonical	0	0	junction_7	50.0157614046701	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATAGAGGTGGATGTT	NA	False	NA	NA	False	AATAAA	-8	NA	52122236	52129317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_39843.known	chr14	+	1844	13	FSM	ENSMUSG00000004561.15	ENSMUST00000168413.8	1844	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	44.5586380202787	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATAGAGGTGGATGTT	NA	False	NA	NA	False	AATAAA	-8	NA	52122332	52129317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126855_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_39847.nic	chr14	+	2353	12	NIC	ENSMUSG00000004561.15	novel	1430	13	NA	NA	-118	0	intron_retention	FALSE	canonical	3	141	junction_9	16.6465443265721	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATAGAGGTGGATGTT	NA	False	NA	NA	False	AATAAA	-8	NA	52122180	52129317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_39849.known	chr14	+	1513	12	FSM	ENSMUSG00000004561.15	ENSMUST00000163603.8	1513	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_6	39.3664706097011	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCAGGAAGAGAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	52122345	52129250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_39863.known	chr14	+	2334	4	FSM	ENSMUSG00000072572.10	ENSMUST00000047726.12	2334	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGACTGCCTCACTGGC	NA	False	NA	NA	False	NA	NA	NA	52131066	52134202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52131372_52131545_52131677_52131912_52131964_52132355
transcript_39864.known	chr14	-	2099	16	FSM	ENSMUSG00000004558.16	ENSMUST00000004673.15	2099	16	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_14	42.8779145429854	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCGGGTCTGAATGCGCC	NA	False	NA	1	True	AATAAA	-28	NA	52150887	52142727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148542_52148585_52148922_52149004_52150779
transcript_39865.known	chr14	-	2103	15	FSM	ENSMUSG00000004558.16	ENSMUST00000111632.5	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_6	11.1385064766607	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATTGTTAATCCGGG	9982	False	NA	-11	True	AATAAA	-16	NA	52150945	52142739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52150779
transcript_39866.nic	chr14	-	2195	15	NIC	ENSMUSG00000004558.16	novel	2103	15	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	33.5830526988156	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATTGTTAATCCGGG	9289	False	NA	-11	True	AATAAA	-16	NA	52151638	52142739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52151380
transcript_3987.known	chr1	-	2752	5	FSM	ENSMUSG00000026389.17	ENSMUST00000112640.8	2752	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	6.57647321898295	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAATAGTTAAAATTGT	NA	False	NA	-21	True	NA	NA	NA	120193014	120154152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120192961
transcript_39871.known	chr14	+	5621	24	FSM	ENSMUSG00000004562.17	ENSMUST00000093813.12	5621	24	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_21	8.41571129479579	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTGGCAGAGCGGCTCC	NA	False	NA	NA	False	AATAAA	-23	NA	52222294	52243708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52222449_52224859_52225058_52226158_52227396_52227504_52227673_52228360_52228488_52229057_52229155_52229268_52229350_52229470_52229588_52231550_52231647_52231739_52231856_52232336_52232464_52233522_52233646_52233720_52233865_52234332_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52241429_52241574_52242068_52242200_52242445_52242493_52242797
transcript_39873.known	chr14	+	4843	24	FSM	ENSMUSG00000004562.17	ENSMUST00000100639.11	4843	24	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_22	8.08906003498104	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGACTCTGAGGAGCTC	NA	False	NA	2	True	ATTAAA	-14	NA	52222320	52243079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52222449_52224859_52225058_52226158_52227396_52227504_52227673_52228360_52228488_52229057_52229155_52229268_52229350_52229470_52229588_52231550_52231647_52231739_52231856_52232336_52232464_52233522_52233646_52233720_52233865_52234332_52234944_52235069_52235305_52235600_52235688_52237279_52237496_52238305_52238477_52239741_52239920_52241110_52241216_52242068_52242200_52242335_52242357_52242445_52242493_52242797
transcript_3988.nic	chr1	-	3039	5	ISM	ENSMUSG00000026389.17	ENSMUST00000112643.2	2873	6	2241	-230	-41	0	3prime_fragment	FALSE	canonical	3	10	junction_4	16.3554272337961	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAATAGTTAAAATTGT	NA	False	NA	-21	True	NA	NA	NA	120198194	120154152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120197854
transcript_39893.known	chr14	-	3017	6	FSM	ENSMUSG00000049295.18	ENSMUST00000166169.4	3017	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	162.277540035582	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCTGTGTGTGTCT	5739	False	NA	-11	True	AATAAA	-16	NA	52257145	52243542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252510_52256951
transcript_399.nic	chr1	+	2517	20	NIC	ENSMUSG00000056763.17	novel	2535	8	NA	NA	-18	-3784	combination_of_known_junctions	FALSE	canonical	2	91	junction_2	24.8042753887778	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGGAGGAAGAAAAACATAA	NA	False	NA	NA	False	NA	NA	NA	10109973	10183172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100
transcript_39900.nnic	chr14	-	3364	6	NIC	ENSMUSG00000049295.18	novel	3017	6	NA	NA	-102	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_5	162.023948847076	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	5612	False	NA	-7	True	AATAAA	-20	NA	52257272	52243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252726_52256951
transcript_39902.nnic	chr14	-	3371	6	NIC	ENSMUSG00000049295.18	novel	3017	6	NA	NA	-80	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_5	164.327234504814	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	5352	False	NA	-7	True	AATAAA	-20	NA	52257532	52243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252726_52257204
transcript_3991.known	chr1	+	1999	2	FSM	ENSMUSG00000036907.12	ENSMUST00000037286.12	1999	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCGGCTCCTGCTCTTTT	6891	False	NA	NA	False	ATTAAA	-14	NA	120268311	120270903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_120269531_120270123
transcript_39912.nic	chr14	-	2870	5	NIC	ENSMUSG00000049295.18	novel	2933	5	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	155.633182515812	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	9418	False	NA	-7	True	AATAAA	-20	NA	52248386	52243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52248238
transcript_39916.known	chr14	-	2804	5	FSM	ENSMUSG00000049295.18	ENSMUST00000226522.2	2804	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	128.961961446002	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTCTGCCTGTGTT	5765	False	NA	-2	True	AATAAA	-25	NA	52252039	52243533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52251962
transcript_39918.nic	chr14	-	3256	5	NIC	ENSMUSG00000049295.18	novel	3017	6	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_4	155.633182515812	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	5399	False	NA	-7	True	AATAAA	-20	NA	52257485	52243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52256951
transcript_3992.known	chr1	+	2624	2	FSM	ENSMUSG00000058665.9	ENSMUST00000079721.9	2624	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGACTGCCCTCTTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	120530146	120535721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_120531651_120534601
transcript_39921.known	chr14	-	2933	5	FSM	ENSMUSG00000049295.18	ENSMUST00000067549.15	2933	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	128.195895020082	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4694	False	NA	-7	True	AATAAA	-20	NA	52258190	52243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52257979
transcript_39930.nnic	chr14	-	2852	4	NIC	ENSMUSG00000049295.18	novel	3017	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_3	179.668831155793	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	5714	False	NA	-7	True	AATAAA	-20	NA	52257170	52243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_52244605_52244820_52244953_52245684_52247120_52256951
transcript_39931.known	chr14	-	2812	4	FSM	ENSMUSG00000049295.18	ENSMUST00000228580.2	2812	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	140.753527684231	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4726	False	NA	-7	True	AATAAA	-20	NA	52258158	52243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52257979
transcript_39935.known	chr14	+	415	2	FSM	ENSMUSG00000072571.4	ENSMUST00000228408.2	415	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGGGGCATCTCATT	NA	False	NA	NA	False	NA	NA	NA	52254350	52254879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52254399_52254512
transcript_39937.known	chr14	+	1234	7	FSM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_4	6.83130051063973	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGACGCCAGGCGCTG	NA	False	NA	23	True	AATAAA	-37	NA	52254321	52257251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52254399_52254512_52254655_52255207_52255319_52255410_52255468_52255998_52256110_52256188_52256336_52256662
transcript_39949.known	chr14	-	2498	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228198.2	2498	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1148.92795139643	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAAATGGCTTTTA	8754	False	NA	NA	False	GGGGCT	-20	NA	52341456	52311132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
transcript_3995.known	chr1	-	2697	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255753	121232081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
transcript_39950.known	chr14	-	2535	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228232.2	2535	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	1522.21910380865	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8749	False	NA	39	True	AATAAA	-15	NA	52341461	52312258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778_52336002_52341345
transcript_39951.known	chr14	-	1683	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227458.2	1683	9	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_2	1099.6436638748	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTTGAAGGAAAGACAAT	8750	False	NA	-18	True	AATAAA	-20	NA	52341460	52311909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
transcript_39954.known	chr14	-	2847	9	FSM	ENSMUSG00000060373.16	ENSMUST00000111610.12	2847	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1135.23408929612	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8725	False	NA	-31	True	AATAAA	-22	NA	52341485	52310833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
transcript_39957.known	chr14	-	2617	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	0	0	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTAGAAGCTGGTGTGT	8748	False	NA	-38	True	AATAAA	-19	NA	52341462	52311001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
transcript_3996.nnic	chr1	-	2432	6	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_4	72.0316597059932	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255520	121232081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247357_121247702_121255419
transcript_39986.known	chr14	-	1301	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	0	0	0	0	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8784	False	NA	42	True	AATAAA	-18	NA	52341426	52312255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
transcript_39987.nic	chr14	-	1390	8	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	1620	junction_2	930.149406475834	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8674	False	NA	42	True	AATAAA	-18	NA	52341536	52312255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
transcript_4.known	ERCC-00009	+	968	1	FSM	ERCC-00009A	DQ668364	968	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	655	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00009_+_0_1000
transcript_40.known	ERCC-00113	+	825	1	FSM	ERCC-00113A	DQ883663	825	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1852	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00113_+_0_800
transcript_4000.known	chr1	-	674	5	FSM	ENSMUSG00000003721.15	ENSMUST00000186915.2	674	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	81.0524521529115	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCGCTACATGAAAGATATG	NA	False	NA	NA	False	AATAAA	-14	NA	121255448	121233423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121255419
transcript_40001.nic	chr14	-	920	7	ISM	ENSMUSG00000060373.16	ENSMUST00000228198.2	2498	9	-80	1949	-51	-823	5prime_fragment	FALSE	canonical	3	714	junction_3	1108.23955743633	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGCAAGCAGGTAATAGT	8674	False	NA	-12	True	AAAAAG	-7	NA	52341536	52313081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
transcript_40003.nic	chr14	-	878	7	ISM	ENSMUSG00000060373.16	ENSMUST00000228748.2	1691	9	-69	1173	-48	-823	5prime_fragment	FALSE	canonical	3	2009	junction_5	707.429541053776	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGCAAGCAGGTAATAGT	8677	False	NA	-12	True	AAAAAG	-7	NA	52341533	52313081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
transcript_40009.known	chr14	-	660	3	FSM	ENSMUSG00000060373.16	ENSMUST00000228045.2	660	3	0	0	0	0	multi-exon	FALSE	canonical	3	2009	junction_1	74.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTTTTCTTTCTTTC	8754	False	NA	NA	False	NA	NA	NA	52341456	52321325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52321849_52335471_52335498_52341345
transcript_40012.known	chr14	-	4673	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTTATGACCATTT	NA	False	NA	-1	True	AATAAA	-40	NA	52434873	52397870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
transcript_4002.known	chr1	-	1204	6	FSM	ENSMUSG00000003721.15	ENSMUST00000160968.8	1204	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	77.0817747590181	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGCTAAAAACAAAGCAAAT	NA	False	NA	NA	False	NA	NA	NA	121255475	121233266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255449
transcript_40032.nic	chr14	-	2188	16	ISM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	-19	13608	-19	-12303	5prime_fragment	FALSE	canonical	3	979	junction_11	78.8541832892981	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAGCTGAAGAGAAAGAA	NA	False	NA	-8	True	TATAAA	-27	NA	52434892	52411478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
transcript_4004.known	chr1	+	2338	24	FSM	ENSMUSG00000026339.19	ENSMUST00000112621.2	2338	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	17.1308761805856	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGTATTGAGCAACTGC	NA	False	NA	NA	False	AATAAA	-14	NA	121358838	121429317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952_121376010_121383799_121383901_121389192_121389230_121389615_121389709_121389964_121390013_121390827_121390915_121403760_121403878_121405563_121405627_121408543_121408618_121409724_121409807_121410329_121410396_121411015_121411070_121414331_121414395_121418850_121418960_121420633_121420717_121422124_121422163_121424712_121424798_121426936_121427051_121428918
transcript_40041.nic	chr14	-	1413	11	ISM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	152	16741	152	-15436	5prime_fragment	FALSE	canonical	3	979	junction_6	76.6407202471376	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAGAAAATGATAAGTGAT	NA	False	NA	0	True	AGTAAA	-23	NA	52434721	52414611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
transcript_40047.nic	chr14	-	982	6	ISM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	-29	20698	-29	-19393	5prime_fragment	FALSE	canonical	3	979	junction_1	84.3644474882637	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTAGCTGGGGCAGATCC	NA	False	NA	NA	False	AAGAAA	-6	NA	52434902	52418568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
transcript_40053.nic	chr14	-	589	3	ISM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	3	22602	3	-21297	5prime_fragment	FALSE	canonical	3	1100	junction_1	60	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGTTGGGACCAATATAT	NA	False	NA	NA	False	NA	NA	NA	52434870	52420472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_52420640_52421384_52421478_52434541
transcript_40060.nic	chr14	-	2051	6	NIC	ENSMUSG00000053754.15	novel	8509	38	NA	NA	0	-3256	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	13.0230564768798	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACAGAGGACCTGGATAT	9242	False	NA	NA	False	NA	NA	NA	52481966	52465101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52481889
transcript_40061.nic	chr14	-	2115	6	ISM	ENSMUSG00000053754.15	ENSMUST00000200169.6	8509	38	-38	29494	-38	-3256	5prime_fragment	FALSE	canonical	3	27	junction_5	9.99199679743744	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACAGAGGACCTGGATAT	393	False	NA	NA	False	NA	NA	NA	52495275	52465101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52495134
transcript_40063.known	chr14	-	2025	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCTTTCCACTTAGTG	NA	False	NA	-16	True	AATAAA	-39	NA	52542585	52532297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
transcript_40065.known	chr14	+	5350	10	FSM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	167.945390889383	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTCTAGTCTGGTCTGTG	NA	False	NA	21	True	AAAAAG	-14	NA	52516602	52533858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_52516690_52516844_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
transcript_40075.known	chr14	-	2159	9	FSM	ENSMUSG00000022160.19	ENSMUST00000147768.8	2159	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	54.0854358861977	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTGCCATATTATTTGC	NA	False	NA	NA	False	ATTAAA	-21	NA	52542581	52532963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52537157_52537563_52537640_52537859_52542344
transcript_40077.known	chr14	-	2906	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTGTCATTTCTGAC	NA	False	NA	1	True	ATTAAA	-27	NA	52517002	52499215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
transcript_40079.known	chr14	-	607	8	FSM	ENSMUSG00000022159.17	ENSMUST00000174020.8	607	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	49.8475226084916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCGGGCCTGAGTGAGCG	NA	False	NA	NA	False	NA	NA	NA	52516698	52501166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506414_52512899_52512968_52516370_52516443_52516652
transcript_40083.known	chr14	-	1504	1	FSM	ENSMUSG00000022160.19	ENSMUST00000197394.2	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	52542581	52541077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52541100_52542600
transcript_40084.known	chr14	-	4773	2	FSM	ENSMUSG00000049532.12	ENSMUST00000135523.5	4773	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTCTCCTTATTTTATG	NA	False	NA	NA	False	ATTAAA	-24	NA	52553780	52548628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_52553121_52553499
transcript_40085.known	chr14	-	1768	1	FSM	ENSMUSG00000115785.2	ENSMUST00000228343.2	1768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTTTGGAGGTCTAGGA	NA	False	NA	NA	False	AATAAA	-34	NA	53100209	53098441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_53098400_53100200
transcript_40086.known	chr14	+	438	1	FSM	ENSMUSG00000094974.2	ENSMUST00000100614.6	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	53140249	53140687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_53140200_53140700
transcript_40087.known	chr14	+	438	1	FSM	ENSMUSG00000096681.2	ENSMUST00000168472.3	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	7934	False	NA	NA	False	NA	NA	NA	53451186	53451624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_53451200_53451600
transcript_40088.known	chr14	-	878	3	FSM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	0	0	0	0	multi-exon	FALSE	canonical	3	1530	junction_1	8	556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTTCCTTCATGTTTGTG	NA	False	NA	-11	True	ATTAAA	-24	NA	54491561	54472935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54473171_54480155_54480326_54491088
transcript_40093.known	chr14	+	2508	7	FSM	ENSMUSG00000040997.15	ENSMUST00000180359.8	2508	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	134.648616777151	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAGTATTAACTCCTGG	NA	False	NA	-78	True	TATAAA	-16	NA	54491644	54506532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54491929_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
transcript_40096.known	chr14	+	2406	7	FSM	ENSMUSG00000040997.15	ENSMUST00000239403.2	2406	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_1	38.1200588783502	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACTGTTTAATATTGAT	NA	False	NA	16	True	AATAAA	-23	NA	54496688	54506626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
transcript_40102.known	chr14	+	647	3	FSM	ENSMUSG00000040997.15	ENSMUST00000197802.2	647	3	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_1	51.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAGAGTTAAACATCTT	NA	False	NA	NA	False	AATACA	-16	NA	54496729	54500618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54496777_54499082_54499172_54500107
transcript_4011.known	chr1	-	2258	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTATACCTTTCCCT	NA	False	NA	-16	True	CATAAA	-23	NA	121495718	121481563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
transcript_40116.nnic	chr14	-	2450	14	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-192	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_10	63.335679391822	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655429	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650180_54650242_54651024_54651105_54651336_54651471_54654045_54654228_54655357
transcript_40125.nnic	chr14	-	2444	13	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-113	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_10	59.2219811856675	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655350	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54651336_54651471_54654045_54654228_54655205
transcript_40126.nnic	chr14	-	2400	13	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-221	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_10	53.460785212673	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655458	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54651336_54651471_54654045_54654228_54655357
transcript_40133.nnic	chr14	-	2660	13	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-69	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	59.7063997128169	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655306	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650180_54650242_54651336_54651471_54654045_54654228_54654944
transcript_40135.nnic	chr14	-	2443	13	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-113	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	61.0634346852153	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655350	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650180_54650242_54651336_54651471_54654045_54654228_54655205
transcript_40136.nnic	chr14	-	2407	13	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-229	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	55.5995103895309	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655466	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650180_54650242_54651336_54651471_54654045_54654228_54655357
transcript_40149.nnic	chr14	-	2310	12	NNC	ENSMUSG00000000958.11	novel	2126	11	NA	NA	-113	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_11	59.7364736236726	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655350	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54654045_54654228_54655205
transcript_40150.nnic	chr14	-	2411	12	NNC	ENSMUSG00000000958.11	novel	2126	11	NA	NA	-366	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_10	53.1871792169678	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655603	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54654045_54654228_54655357
transcript_40158.nnic	chr14	-	2338	12	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-221	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_9	49.5403667112416	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655458	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54651336_54651471_54654045_54654228_54655357
transcript_40163.nnic	chr14	-	2631	11	NNC	ENSMUSG00000000958.11	novel	2126	11	NA	NA	-124	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_10	54.1332614942052	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655361	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54654833
transcript_40164.nic	chr14	-	2522	11	NIC	ENSMUSG00000000958.11	novel	2126	11	NA	NA	-126	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_10	51.7787601242054	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655363	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54654944
transcript_40165.known	chr14	-	2126	11	FSM	ENSMUSG00000000958.11	ENSMUST00000226753.2	2126	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	53.6977653166312	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655136	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655113
transcript_40166.nnic	chr14	-	2248	11	NNC	ENSMUSG00000000958.11	novel	2126	11	NA	NA	-113	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_10	53.915118473393	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655350	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655205
transcript_40167.nnic	chr14	-	2170	11	NNC	ENSMUSG00000000958.11	novel	2126	11	NA	NA	-187	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_9	44.7447203589429	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655424	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655357
transcript_40172.known	chr14	+	2538	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	0	0	0	multi-exon	TRUE	canonical	3	499	junction_4	29.1475598792348	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTTCAGAGTTGAAGCT	NA	False	NA	NA	False	AATAAA	-21	NA	54598297	54607130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
transcript_40174.nnic	chr14	-	2026	10	NNC	ENSMUSG00000000958.11	novel	2132	10	NA	NA	-225	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	51.9767279358135	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655462	54606898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54655357
transcript_40189.known	chr14	+	1438	3	FSM	ENSMUSG00000000959.8	ENSMUST00000198107.2	1438	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	34.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAAATGTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	54598297	54601952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54598375_54598778_54598926_54600738
transcript_40190.known	chr14	+	1059	1	FSM	ENSMUSG00000000959.8	ENSMUST00000228567.2	1059	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATGAAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	54598290	54599349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54598300_54599300
transcript_40191.known	chr14	+	418	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_1	196.876230154887	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTGGCTTTCTTTTC	NA	False	NA	27	True	AATAAA	-28	NA	54664365	54667213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
transcript_40193.nic	chr14	+	507	4	NIC	ENSMUSG00000010406.13	novel	418	5	NA	NA	-20	0	intron_retention	FALSE	canonical	3	1056	junction_1	226.233409459248	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664345	54667203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_54664418_54664490_54664696_54666040_54666106_54667038
transcript_40195.known	chr14	+	856	1	FSM	ENSMUSG00000010406.13	ENSMUST00000199153.2	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54664378	54665234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54664400_54665200
transcript_40196.known	chr14	+	463	4	FSM	ENSMUSG00000010406.13	ENSMUST00000199195.3	463	4	0	0	0	0	multi-exon	FALSE	canonical	3	1331	junction_1	96.858430482615	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACTCTCTCTGGCTT	NA	False	NA	20	True	AATAAA	-21	NA	54664386	54667206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54664549_54664627_54664696_54666040_54666106_54667038
transcript_40197.known	chr14	+	429	3	FSM	ENSMUSG00000010406.13	ENSMUST00000199689.2	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	1524	junction_2	11.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664496	54667203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54664696_54666040_54666106_54667038
transcript_40198.known	chr14	+	277	3	FSM	ENSMUSG00000010406.13	ENSMUST00000196273.2	277	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	660.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACTCTCTCTGGCTT	NA	False	NA	20	True	AATAAA	-21	NA	54664507	54667206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54664549_54664627_54664696_54667038
transcript_40199.known	chr14	+	2596	10	FSM	ENSMUSG00000000957.12	ENSMUST00000089688.6	2596	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	5.50644964149505	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	54669068	54678722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54669431_54673201_54673351_54673594_54673718_54674071_54674380_54675057_54675220_54676121_54676283_54676467_54676607_54676737_54676889_54677361_54677478_54677797
transcript_40204.known	chr14	+	4228	7	FSM	ENSMUSG00000022175.10	ENSMUST00000022782.10	4228	7	0	0	0	0	multi-exon	TRUE	canonical	3	169	junction_1	20.8306664959782	613	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAAGGTTTCCTTTGTTGT	NA	False	NA	NA	False	AATATA	-18	NA	54701593	54708954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54702069_54702360_54702406_54703030_54703167_54704916_54705108_54705220_54706239_54706492_54706623_54706721
transcript_40213.known	chr14	+	1884	5	FSM	ENSMUSG00000022176.12	ENSMUST00000164766.8	1884	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.29128784747792	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAGTTTATCTTGGCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	54713556	54717888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54713832_54714927_54715273_54715484_54715559_54716410_54716619_54716906
transcript_40220.known	chr14	-	2691	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	705	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCTGCTTCTTTCTGCCT	4695	False	NA	-11	True	AATAAA	-25	NA	54754982	54744643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
transcript_4023.known	chr1	-	451	3	FSM	ENSMUSG00000001674.12	ENSMUST00000131471.2	451	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	295.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCGAAAACTGAAGAAAG	NA	False	NA	NA	False	TATAAA	-41	NA	121495451	121492324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_121492333_121493609_121493898_121495296
transcript_40257.known	chr14	-	1587	10	FSM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_5	37.1423687391577	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGTCATTTTTCCT	NA	False	NA	-1	True	AATAAA	-20	NA	54791818	54779241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
transcript_40267.known	chr14	-	3397	8	FSM	ENSMUSG00000022178.12	ENSMUST00000054487.10	3397	8	0	0	0	0	multi-exon	TRUE	canonical	3	297	junction_5	54.835933399886	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGAGTGTATTGTGGT	NA	False	NA	-6	True	AGTAAA	-18	NA	54815015	54804928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54806514_54806932_54807002_54807701_54807754_54807833_54807965_54809057_54809121_54809222_54809291_54810848_54810951_54813688
transcript_40273.known	chr14	-	2214	6	FSM	ENSMUSG00000022178.12	ENSMUST00000226463.2	2214	6	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_5	64.082446894606	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTTGTGAGTGTATTGT	NA	False	NA	-9	True	AGTAAA	-15	NA	54809539	54804931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54806514_54806932_54807002_54807701_54807754_54807833_54807965_54809057_54809121_54809222
transcript_40277.known	chr14	-	2670	7	FSM	ENSMUSG00000022179.6	ENSMUST00000022786.6	2670	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	4.10960933531265	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTGTTGGGCTTAGT	NA	False	NA	-1	True	NA	NA	NA	54843450	54821119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54822164_54822435_54822549_54823108_54823213_54823392_54823455_54828578_54828897_54832570_54833409_54843259
transcript_40279.known	chr14	-	899	3	FSM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_2	4.5	3236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8624	False	NA	-17	True	AATAAA	-18	NA	54855479	54851575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54851939_54853971_54854279_54855250
transcript_40280.known	chr14	-	622	3	FSM	ENSMUSG00000022193.8	ENSMUST00000227257.2	622	3	0	0	0	0	multi-exon	FALSE	canonical	2	118	junction_1	868	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTGGAGTCCACAGTTA	8638	False	NA	-19	True	AATAAA	-16	NA	54855465	54851577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54851939_54854232_54854279_54855250
transcript_40281.known	chr14	-	4383	19	FSM	ENSMUSG00000022185.20	ENSMUST00000147714.8	4383	19	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_16	159.32330861072	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGTGCCTTTCCTTGG	2945	False	NA	-1	True	AATAAA	-24	NA	54924073	54879618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
transcript_40282.known	chr14	-	4735	19	FSM	ENSMUSG00000022185.20	ENSMUST00000022793.15	4735	19	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_16	154.301732625911	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	2630	False	NA	0	True	AATAAA	-25	NA	54924388	54879617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
transcript_40284.known	chr14	-	4048	18	FSM	ENSMUSG00000022185.20	ENSMUST00000111484.9	4048	18	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_15	148.725217469731	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAGAAAACACTAGAGAGC	2630	False	NA	NA	False	NA	NA	NA	54924388	54880184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
transcript_40288.nic	chr14	-	3798	17	ISM	ENSMUSG00000022185.20	ENSMUST00000022793.15	4735	19	-69	1797	-69	297	5prime_fragment	FALSE	canonical	3	51	junction_14	152.889257307373	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGTGAAAAGAAAGGTA	2561	False	NA	NA	False	AAGAAA	-2	NA	54924457	54881414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
transcript_40291.nic	chr14	-	3678	16	ISM	ENSMUSG00000022185.20	ENSMUST00000111484.9	4048	18	-69	1230	-69	297	5prime_fragment	FALSE	canonical	3	59	junction_13	148.155263903184	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGTGAAAAGAAAGGTA	2561	False	NA	NA	False	AAGAAA	-2	NA	54924457	54881414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
transcript_40296.nnic	chr14	-	3612	13	NNC	ENSMUSG00000059674.8	novel	3489	12	NA	NA	-213	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	0.9537935951883	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGAGCCCGCTTCTGTAT	NA	False	NA	-5	True	AATAAA	-17	NA	54879034	54868687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54868991_54869080_54870070_54870503_54870753_54870915_54871028_54871106_54871229_54873789_54873927_54874777_54875032_54875460_54875649_54875783_54875952_54876024_54876145_54876327_54876623_54876800_54877119_54878677
transcript_40304.known	chr14	-	2494	13	FSM	ENSMUSG00000022185.20	ENSMUST00000150371.8	2494	13	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_12	131.761437412047	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATTTGAGTGCCTTTC	3757	False	NA	-6	True	AATAAA	-19	NA	54891139	54879623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54890991
transcript_40305.known	chr14	-	2373	13	FSM	ENSMUSG00000022185.20	ENSMUST00000148754.10	2373	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	140.751628172939	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGTGCCTTTCCTTGG	3738	False	NA	-1	True	AATAAA	-24	NA	54891158	54879618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54891136
transcript_40306.nic	chr14	-	2547	13	NIC	ENSMUSG00000022185.20	novel	2494	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	25	junction_12	135.990706381805	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGTGCCTTTCCTTGG	3748	False	NA	-1	True	AATAAA	-24	NA	54891148	54879618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890775_54890991
transcript_4031.known	chr1	-	2554	13	FSM	ENSMUSG00000026341.17	ENSMUST00000027579.17	2554	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	606.954190107366	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGGTTTTTCTTCGTGC	NA	False	NA	-3	True	AATAAA	-21	NA	125363464	125320641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
transcript_40313.known	chr14	-	2381	12	FSM	ENSMUSG00000022185.20	ENSMUST00000141453.8	2381	12	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_11	154.04743285835	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3772	False	NA	0	True	AATAAA	-25	NA	54891124	54879617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884291_54885544_54885588_54889173_54889316_54890991
transcript_40314.nnic	chr14	-	2309	12	NIC	ENSMUSG00000022185.20	novel	2373	13	NA	NA	-37	0	intron_retention	FALSE	canonical	2	44	junction_11	143.681063240374	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGTGCCTTTCCTTGG	3701	False	NA	-1	True	AATAAA	-24	NA	54891195	54879618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884294_54885544_54885588_54889173_54889316_54891136
transcript_40315.known	chr14	-	2369	12	FSM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_11	105.5899600787	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3823	False	NA	0	True	AATAAA	-25	NA	54891073	54879617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890991
transcript_40316.nnic	chr14	-	2345	12	NIC	ENSMUSG00000022185.20	novel	2373	13	NA	NA	-37	0	intron_retention	FALSE	canonical	2	44	junction_11	118.32012885626	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGTGCCTTTCCTTGG	3701	False	NA	-1	True	AATAAA	-24	NA	54891195	54879618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54891136
transcript_40338.nic	chr14	-	1442	10	ISM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	-79	1797	0	297	5prime_fragment	FALSE	canonical	3	94	junction_9	110.706820024784	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGTGAAAAGAAAGGTA	3744	False	NA	NA	False	AAGAAA	-2	NA	54891152	54881414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890991
transcript_40339.nnic	chr14	-	1340	10	NIC	ENSMUSG00000022185.20	novel	2373	13	NA	NA	-37	297	intron_retention	FALSE	canonical	2	44	junction_9	125.030169198784	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGTGAAAAGAAAGGTA	3701	False	NA	NA	False	AAGAAA	-2	NA	54891195	54881414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54891136
transcript_40353.nic	chr14	-	1014	6	ISM	ENSMUSG00000022185.20	ENSMUST00000022793.15	4735	19	-69	23379	-69	-414	5prime_fragment	FALSE	canonical	3	51	junction_3	38.9512515845127	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATAGAGGAGGAGG	2561	False	NA	-38	True	NA	NA	NA	54924457	54902996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
transcript_40356.known	chr14	-	696	7	FSM	ENSMUSG00000022185.20	ENSMUST00000123875.2	696	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	164.537736299813	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCGCAGAGGGCCAGGAGA	3754	False	NA	NA	False	NA	NA	NA	54891142	54883195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54883201_54883907_54884025_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890775_54890991
transcript_40357.known	chr14	+	811	3	FSM	ENSMUSG00000040822.8	ENSMUST00000228027.2	811	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	179.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTCGAGGTTGGGCTGA	NA	False	NA	NA	False	NA	NA	NA	54923693	54927570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54924111_54924493_54924578_54927260
transcript_40358.known	chr14	+	1843	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	54923672	54928198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_54924578_54927260
transcript_4036.known	chr1	-	2565	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	0	0	0	0	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGATGGTTTTTCTTCGTG	NA	False	NA	-4	True	AATAAA	-20	NA	125363284	125320642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
transcript_40362.known	chr14	-	1241	2	FSM	ENSMUSG00000052435.8	ENSMUST00000064290.8	1241	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTTCACTGGGTCTTGG	9086	False	NA	NA	False	AATAAA	-23	NA	54949631	54947816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54948332_54948905
transcript_40363.known	chr14	-	4084	11	FSM	ENSMUSG00000022180.8	ENSMUST00000022787.8	4084	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	10.5375518978556	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGATGGAGTTAATAATCAT	NA	False	NA	NA	False	AATAAA	-19	NA	55019387	54959665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54995895_54996048_54996997_54997203_55018636
transcript_40364.nnic	chr14	-	3224	9	NNC	ENSMUSG00000022180.8	novel	4084	11	NA	NA	27006	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_7	6.32331993497087	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGATGGAGTTAATAATCAT	2168	False	NA	NA	False	AATAAA	-19	NA	54992381	54959665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54992133
transcript_40367.known	chr14	+	1201	15	FSM	ENSMUSG00000112858.3	ENSMUST00000218311.2	1201	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	4.37525509460387	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAACTGTGTGTGT	NA	False	NA	1	True	ATTAAA	-5	NA	55051597	55091552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55051743_55053942_55054044_55056993_55057047_55057594_55057670_55075569_55075686_55076681_55076743_55077723_55077753_55079339_55079387_55079595_55079639_55079805_55079867_55080243_55080293_55086123_55086164_55086751_55086847_55087992_55088055_55091328
transcript_40368.known	chr14	-	4713	2	FSM	ENSMUSG00000057156.11	ENSMUST00000142283.4	4713	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTACTGCTTCTCCATGG	5528	False	NA	NA	False	AATAAA	-21	NA	55101615	55091243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55095739_55101397
transcript_40369.known	chr14	+	1245	9	FSM	ENSMUSG00000092232.2	ENSMUST00000134077.2	1245	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1193.27375316815	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGATGACCTTGATGGA	NA	False	NA	2	True	NA	NA	NA	55120897	55135594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55120964_55121253_55121342_55121830_55122271_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_40374.known	chr14	+	826	8	FSM	ENSMUSG00000022194.16	ENSMUST00000172695.2	826	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	865.393127605092	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGTGTATTAGGAGG	NA	False	NA	-3	True	NA	NA	NA	55131612	55135513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55131765_55131847_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_40375.nnic	chr14	+	856	8	NNC	ENSMUSG00000022194.16	novel	826	8	NA	NA	-19	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	865.393127605092	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGATGACCTTGATGGA	NA	False	NA	2	True	NA	NA	NA	55131585	55135594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_55131659_55131819_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_40376.known	chr14	+	1030	7	FSM	ENSMUSG00000022194.16	ENSMUST00000022808.14	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_6	205.041797906887	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGATATA	NA	False	NA	34	True	NA	NA	NA	55131604	55135626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_40386.known	chr14	+	1761	6	FSM	ENSMUSG00000022194.16	ENSMUST00000116476.9	1761	6	0	0	0	0	multi-exon	FALSE	canonical	3	2245	junction_1	149.688209288507	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATATTTAAAAAAA	NA	False	NA	21	True	NA	NA	NA	55131604	55135613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577
transcript_40388.known	chr14	+	700	7	FSM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	922.719651657834	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAAGATGACCTTGAT	NA	False	NA	-1	True	NA	NA	NA	55132074	55135591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55132127_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_40394.known	chr14	+	912	6	FSM	ENSMUSG00000022194.16	ENSMUST00000141446.8	912	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1010.69342532738	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCACTGTTTGGACTTGG	NA	False	NA	NA	False	NA	NA	NA	55132029	55135014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55132127_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577
transcript_40395.known	chr14	+	1775	5	FSM	ENSMUSG00000022194.16	ENSMUST00000150975.8	1775	5	0	0	0	0	multi-exon	FALSE	canonical	3	2245	junction_1	156.472641378613	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAGGAAAAAAAAAAGA	NA	False	NA	37	True	AAAAAG	-35	NA	55131611	55135553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408
transcript_40399.known	chr14	+	3509	4	FSM	ENSMUSG00000089682.11	ENSMUST00000022806.10	3509	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTGAACAGGGTTTTGTG	NA	False	NA	25	True	AATAAA	-29	NA	55120833	55125691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55120964_55121253_55121342_55121830_55122271_55122840
transcript_40402.known	chr14	-	2340	10	FSM	ENSMUSG00000022199.13	ENSMUST00000228495.3	2340	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	2.24982852570184	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCATATCATAGCCTGGA	NA	False	NA	-21	True	AATAAA	-17	NA	55150555	55144207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55144817_55144975_55145088_55145342_55145561_55145717_55145824_55145958_55146105_55146279_55146446_55147127_55147283_55149505_55149610_55149698_55150191_55150323
transcript_40404.known	chr14	-	2302	9	FSM	ENSMUSG00000022199.13	ENSMUST00000226718.2	2302	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	2.3418742493994	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGACTTCCCTCCCTGT	NA	False	NA	-8	True	AATAAA	-30	NA	55150347	55144194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55144817_55144975_55145088_55145342_55145824_55145958_55146105_55146279_55146446_55147127_55147283_55149505_55149610_55149698_55150191_55150323
transcript_40405.nic	chr14	-	2358	8	NIC	ENSMUSG00000022199.13	novel	2340	10	NA	NA	9	0	intron_retention	FALSE	canonical	1	1	junction_4	3.10365156891435	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAGCCTGGACTTCCCTC	NA	False	NA	-13	True	AATAAA	-25	NA	55150574	55144199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_55144817_55144975_55145088_55145342_55145824_55145958_55146105_55147127_55147283_55149505_55149610_55149698_55150191_55150323
transcript_40408.known	chr14	-	2595	7	FSM	ENSMUSG00000022199.13	ENSMUST00000227600.2	2595	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.30403793359983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGACTTCCCTCCCTGT	NA	False	NA	-8	True	AATAAA	-30	NA	55150551	55144194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55144817_55144975_55145824_55145958_55146105_55147127_55147283_55149505_55149610_55149698_55150191_55150323
transcript_40412.known	chr14	-	2705	6	FSM	ENSMUSG00000022203.8	ENSMUST00000022813.8	2705	6	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_2	3.32264954516723	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTGTCTTCAGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	55163371	55153991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55154990_55156785_55156876_55157151_55157872_55157961_55158103_55158359_55158639_55162894
transcript_40415.known	chr14	+	1200	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	773	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55252910	55261594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
transcript_40427.known	chr14	-	2673	22	FSM	ENSMUSG00000040701.17	ENSMUST00000036041.15	2673	22	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_4	12.8308372870802	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55344050	55336306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
transcript_40432.nnic	chr14	-	2568	21	NIC	ENSMUSG00000040701.17	novel	2673	22	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_19	30.3714915669284	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55344070	55336306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55343381_55343587_55343964
transcript_40442.known	chr14	-	3031	20	FSM	ENSMUSG00000040701.17	ENSMUST00000151314.9	3031	20	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_15	29.9717318342013	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGAGTTTTGATGGCTGC	NA	False	NA	NA	False	AATAAA	-13	NA	55343991	55336031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
transcript_4045.nic	chr1	+	2769	16	NIC	ENSMUSG00000026342.11	novel	756	6	NA	NA	-82	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	24.987107786928	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTAAGCGATGACAT	NA	False	NA	NA	False	TTTAAA	-41	NA	125488249	125523557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_125488555_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
transcript_40454.known	chr14	+	2830	2	FSM	ENSMUSG00000045691.15	ENSMUST00000050575.9	2830	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGGTCTTTATTTCCGTT	NA	False	NA	7	True	AATAAA	-18	NA	55332240	55336443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55333464_55334836
transcript_40455.known	chr14	-	10397	10	FSM	ENSMUSG00000040721.10	ENSMUST00000036328.9	10397	10	0	0	0	0	multi-exon	TRUE	canonical	3	30	junction_7	9.6966329907873	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGTGTTATGCATTCTA	NA	False	NA	NA	False	NA	NA	NA	55329781	55297718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55301029_55301261_55304739_55304941_55305069_55305564_55305766_55307595_55307655_55308017_55308093_55309315_55309557_55310003_55310522_55310669_55312742_55329464
transcript_40456.known	chr14	+	1392	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	11.5987332172483	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	False	NA	11	True	AATAAA	-26	NA	55716214	55727797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
transcript_40461.known	chr14	+	828	5	FSM	ENSMUSG00000022210.8	ENSMUST00000226168.2	828	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	5.40254569624358	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAGTCTCTGGGTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	55716331	55725034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716
transcript_40463.known	chr14	+	4602	40	FSM	ENSMUSG00000022211.10	ENSMUST00000076236.7	4602	40	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	1.1322770341446	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTCTCTGCTGTGCAAG	NA	False	NA	NA	False	ATTAAA	-20	NA	55728549	55745725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55728741_55730328_55730424_55730676_55730728_55730834_55730895_55730980_55731097_55731284_55731383_55731635_55731707_55731804_55731879_55732109_55732186_55732261_55732351_55732860_55732956_55733180_55733268_55733437_55733548_55733681_55733760_55734243_55734321_55734397_55734503_55734594_55734665_55735120_55735203_55735302_55735400_55735544_55735600_55735675_55735849_55736058_55736128_55736304_55736399_55736499_55736599_55736914_55737044_55737208_55737323_55737749_55737926_55738688_55738777_55738915_55739051_55739286_55739351_55739681_55739891_55740387_55740489_55741293_55741610_55741924_55742057_55742856_55742924_55743026_55743117_55744574_55744694_55744833_55745015_55745141_55745262_55745376
transcript_40467.known	chr14	+	2799	1	FSM	ENSMUSG00000040618.8	ENSMUST00000226270.2	2799	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	9092	False	NA	NA	False	NA	NA	NA	55777923	55780722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55777900_55780700
transcript_40468.known	chr14	+	2417	9	FSM	ENSMUSG00000040618.8	ENSMUST00000226770.2	2417	9	0	0	0	0	multi-exon	FALSE	canonical	3	1491	junction_4	96.0676031500734	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9031	False	NA	27	True	ATTAAA	-24	NA	55777862	55786329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
transcript_40469.known	chr14	+	980	2	FSM	ENSMUSG00000040618.8	ENSMUST00000226514.2	980	2	0	0	0	0	multi-exon	FALSE	canonical	3	1574	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	9015	False	NA	NA	False	NA	NA	NA	55777846	55780718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55777971_55779862
transcript_4047.known	chr1	+	2733	16	FSM	ENSMUSG00000026342.11	ENSMUST00000027580.11	2733	16	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	11.5808270669912	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTAAGCGATGACAT	NA	False	NA	NA	False	TTTAAA	-41	NA	125488752	125523557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_125489022_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
transcript_40470.known	chr14	+	2631	8	FSM	ENSMUSG00000040618.8	ENSMUST00000226664.2	2631	8	0	0	0	0	multi-exon	FALSE	canonical	3	1491	junction_4	101.915130758642	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCCTGTGTCTGCATAG	9038	False	NA	31	True	NA	NA	NA	55777869	55786391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782883_55785153_55785292_55785496_55785593_55785761
transcript_40471.known	chr14	+	2784	11	FSM	ENSMUSG00000040618.8	ENSMUST00000226352.2	2784	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	479.473419492676	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGCAGTTGGAAGAATGG	9014	False	NA	4	True	NA	NA	NA	55777845	55787281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55786112_55786411
transcript_40474.known	chr14	+	2538	15	FSM	ENSMUSG00000022214.16	ENSMUST00000117236.8	2538	15	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_1	36.2303430166213	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGTCTGTGTCACTTT	NA	False	NA	14	True	AATAAA	-19	NA	55797462	55807522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55797579_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_40475.known	chr14	+	2624	15	FSM	ENSMUSG00000022214.16	ENSMUST00000152681.8	2624	15	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	36.5692661191033	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	55797990	55807518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55798085_55798531_55798877_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_40476.nic	chr14	+	2723	15	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	27.5910366989435	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797917	55807521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_55798085_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_40477.nic	chr14	+	2539	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	35.7694573852142	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797940	55807521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_55798085_55798692_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_40479.nic	chr14	+	2883	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	37.1563848991732	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797948	55807521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_55798276_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_40481.nnic	chr14	+	2748	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	37.1563848991732	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797948	55807521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_55798276_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_40484.nnic	chr14	+	2849	15	NIC	ENSMUSG00000022214.16	novel	2601	15	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	37.8544473433898	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55798004	55807521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_55798433_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_40487.known	chr14	+	971	2	FSM	ENSMUSG00000022215.7	ENSMUST00000022826.7	971	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCCTCCGATTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	55813073	55814411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55813405_55813771
transcript_40488.known	chr14	+	2601	15	FSM	ENSMUSG00000022214.16	ENSMUST00000072530.11	2601	15	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	34.3960278912243	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGTGTCTGTGTCAC	NA	False	NA	11	True	AATAAA	-16	NA	55798385	55807519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55798433_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_40489.known	chr14	+	2660	14	FSM	ENSMUSG00000022214.16	ENSMUST00000128490.9	2660	14	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	16.6800735031656	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55798427	55807521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_40490.known	chr14	+	1112	11	FSM	ENSMUSG00000022216.18	ENSMUST00000174259.8	1112	11	0	0	0	0	multi-exon	FALSE	canonical	1	117	junction_4	54.1775783881118	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815816	55818985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
transcript_40495.known	chr14	-	855	5	FSM	ENSMUSG00000022217.15	ENSMUST00000022828.9	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	3.69966214673719	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATGTATTTATTGTGT	NA	False	NA	-5	True	AATAAA	-17	NA	55822759	55818978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55819201_55819337_55819433_55819512_55819583_55822135_55822213_55822368
transcript_40498.known	chr14	-	340	3	FSM	ENSMUSG00000022217.15	ENSMUST00000174352.8	340	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	49	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTATTGTGTTTGGGA	NA	False	NA	1	True	AATAAA	-23	NA	55822403	55818972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55819201_55822135_55822213_55822368
transcript_40501.known	chr14	-	962	11	FSM	ENSMUSG00000079197.11	ENSMUST00000161807.8	962	11	0	0	0	0	multi-exon	FALSE	canonical	3	915	junction_9	61.4455856835949	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGTGTTGTTCATTGA	NA	False	NA	NA	False	AATAAA	-21	NA	55828544	55824897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
transcript_40502.known	chr14	-	795	11	FSM	ENSMUSG00000079197.11	ENSMUST00000111378.10	795	11	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_10	298.855818079555	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACCTGTGTTGTTCATTG	NA	False	NA	NA	False	AATAAA	-20	NA	55828558	55824898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828478
transcript_40505.known	chr14	+	2343	9	FSM	ENSMUSG00000002325.16	ENSMUST00000138037.2	2343	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	18.7945304543636	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTCATGTGGTGTCTA	NA	False	NA	9	True	NA	NA	NA	55842035	55847487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55842179_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
transcript_40507.known	chr14	+	3485	21	FSM	ENSMUSG00000047098.19	ENSMUST00000019443.15	3485	21	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	30.6031044176894	462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCCTCAGCATCCCGGGG	4174	False	NA	38	True	AATAAA	-41	NA	55829164	55841150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55829530_55829625_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
transcript_40508.known	chr14	+	2184	20	FSM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	6.49738920505725	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTCTTTTTTTTTTT	1328	False	NA	9	True	ATTAAA	-21	NA	55855493	55862852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55855811_55856002_55856116_55856198_55856268_55856354_55856498_55856577_55856654_55857036_55857158_55858691_55858777_55859671_55859752_55859883_55860020_55860101_55860175_55860250_55860343_55860620_55860671_55860953_55861092_55861377_55861445_55861532_55861700_55861805_55861855_55862179_55862244_55862341_55862459_55862529_55862637_55862732
transcript_40529.known	chr14	-	3846	30	FSM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_28	76.4571487859417	787	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCCAGTGAGGCAGGAT	9745	False	NA	NA	False	AAAAAG	-5	NA	55873141	55862856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
transcript_4055.known	chr1	+	8436	18	FSM	ENSMUSG00000036155.14	ENSMUST00000038361.11	8436	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.16930457818656	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGTAGTGATTTGGGGGA	NA	False	NA	NA	False	AATAAA	-17	NA	127132754	127416073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_127133165_127177526_127177577_127234370_127234754_127248340_127248503_127292884_127292962_127294139_127294230_127310657_127310730_127312504_127312667_127315079_127315250_127318480_127318616_127325243_127325378_127339863_127339998_127373978_127374129_127387572_127387720_127396928_127397046_127399237_127399313_127407201_127407360_127410263
transcript_40558.nnic	chr14	-	2362	6	NNC	ENSMUSG00000002320.16	novel	2164	6	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_5	127.714682006416	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5197	False	NA	51	True	AATAAA	-19	NA	55880806	55873421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880536
transcript_40560.known	chr14	-	2164	6	FSM	ENSMUSG00000002320.16	ENSMUST00000120041.8	2164	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	125.802384715076	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5295	False	NA	51	True	AATAAA	-19	NA	55880708	55873421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880636
transcript_40562.known	chr14	-	2148	6	FSM	ENSMUSG00000002320.16	ENSMUST00000121791.8	2148	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	136.928594530142	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTCTTTTTACAATTAT	5192	False	NA	4	True	NA	NA	NA	55880811	55873468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880708
transcript_40564.known	chr14	-	2517	6	FSM	ENSMUSG00000002320.16	ENSMUST00000122358.8	2517	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	133.851260733696	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	4740	False	NA	51	True	AATAAA	-19	NA	55881263	55873421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880838
transcript_40581.known	chr14	-	2382	5	FSM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_2	41.5060236592232	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATTTGAACTTTTTA	5206	False	NA	-44	True	ATTAAA	-22	NA	55880797	55873516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050
transcript_40586.nnic	chr14	-	2575	5	NNC	ENSMUSG00000002320.16	novel	2164	6	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_2	139.257854356586	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5169	False	NA	51	True	AATAAA	-19	NA	55880834	55873421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_55874070_55875315_55875651_55877841_55878028_55878423_55879046_55880050
transcript_40590.nnic	chr14	-	2402	5	NNC	ENSMUSG00000002320.16	novel	2398	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	165.610235190945	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCTGTCGTTGGAAGTT	5175	False	NA	48	True	AATAAA	-16	NA	55880828	55873424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_55874070_55875479_55875651_55877841_55878028_55878423_55879046_55880050
transcript_40599.known	chr14	-	708	3	FSM	ENSMUSG00000002320.16	ENSMUST00000138085.2	708	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	181	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTATATTTGCCAATGT	4775	False	NA	NA	False	NA	NA	NA	55881228	55878874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55879046_55880050_55880413_55881053
transcript_40600.known	chr14	-	2271	2	FSM	ENSMUSG00000002320.16	ENSMUST00000127473.2	2271	2	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAGTAAAAATAGCG	5175	False	NA	NA	False	NA	NA	NA	55880828	55877552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55879046_55880050
transcript_40601.known	chr14	-	2089	6	FSM	ENSMUSG00000002320.16	ENSMUST00000149726.8	2089	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	172.787036550778	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTCTTTTTACAA	5185	False	NA	0	True	AATATA	-42	NA	55880818	55873472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55874070_55875315_55875528_55877841_55878028_55878423_55879046_55880050_55880413_55880708
transcript_40602.known	chr14	-	1733	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTAAGCTGTATCTG	2285	False	NA	-8	True	AATAAA	-29	NA	55897965	55895335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
transcript_40604.known	chr14	-	1730	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGAAAGACAATTTTC	2342	False	NA	-23	True	AATAAA	-14	NA	55897908	55895350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
transcript_40608.known	chr14	+	1993	10	FSM	ENSMUSG00000002326.7	ENSMUST00000002397.7	1993	10	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_1	15.6828127988557	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAAGTCTGGACTTCCT	NA	False	NA	NA	False	NA	NA	NA	55909691	55916657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
transcript_40610.known	chr14	-	2001	9	FSM	ENSMUSG00000007589.10	ENSMUST00000227842.2	2001	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	108.661170617659	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCCAAAGGACCTAGATT	NA	False	NA	NA	False	AATAAA	-31	NA	55919202	55914074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55914739_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
transcript_40613.known	chr14	-	2956	9	FSM	ENSMUSG00000007589.10	ENSMUST00000007733.8	2956	9	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_6	40.8281459290034	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAGAAGTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	55919277	55915322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
transcript_40619.known	chr14	-	3130	8	FSM	ENSMUSG00000007589.10	ENSMUST00000228264.2	3130	8	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_5	42.7532073030068	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAAAACAGCTTGTGTG	NA	False	NA	NA	False	TATAAA	-8	NA	55919243	55915268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
transcript_40634.known	chr14	-	824	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	0	0	0	0	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGACTCTTTCTTCTTGA	NA	False	NA	-11	True	AATAAA	-15	NA	55909581	55899719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
transcript_40635.known	chr14	-	516	4	FSM	ENSMUSG00000010376.16	ENSMUST00000228414.2	516	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	873.770501269578	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGGTGCAGTGTTCCTG	NA	False	NA	-134	True	NA	NA	NA	55909334	55899842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55900083_55900871_55900955_55901268_55901379_55909251
transcript_4064.nic	chr1	+	3165	6	ISM	ENSMUSG00000036155.14	ENSMUST00000038361.11	8436	18	-55	119906	-52	-19782	5prime_fragment	FALSE	canonical	0	0	junction_2	2.41660919471891	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGTTTAATGGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127132699	127296167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_127133165_127177526_127177577_127234370_127234754_127248340_127248503_127292884_127292962_127294139
transcript_40641.known	chr14	-	2791	15	FSM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	57.2163812707015	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGTCTGTCTAGGCCAA	802	False	NA	-8	True	AATAAA	-37	NA	55950545	55937475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950391
transcript_40642.nnic	chr14	-	3043	15	NNC	ENSMUSG00000022218.17	novel	2730	15	NA	NA	-109	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	57.854717762227	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCTGTTTAGTAGTCCT	287	False	NA	-23	True	AATAAA	-22	NA	55951060	55937490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950639
transcript_40643.known	chr14	-	2852	15	FSM	ENSMUSG00000022218.17	ENSMUST00000168729.8	2852	15	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_14	53.0521499304684	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGGCCAAGAAGTATGGA	398	False	NA	2	True	AATAAA	-25	NA	55950949	55937465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950744
transcript_40644.known	chr14	-	2730	15	FSM	ENSMUSG00000022218.17	ENSMUST00000178034.9	2730	15	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_14	38.2803834241775	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCTGTTTAGTAGTCCT	396	False	NA	-23	True	AATAAA	-22	NA	55950951	55937490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950843
transcript_40647.known	chr14	-	2882	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTGACCTGCCCAGGG	NA	False	NA	NA	False	ATTAAA	-18	NA	55959659	55952872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
transcript_40648.known	chr14	-	1886	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55959720	55953781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
transcript_4065.known	chr1	+	4762	1	FSM	ENSMUSG00000104378.2	ENSMUST00000194151.2	4762	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAGAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	127198260	127203022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_127198300_127203000
transcript_40657.known	chr14	-	2492	16	FSM	ENSMUSG00000040472.16	ENSMUST00000228826.2	2492	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_15	120.970777003741	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959633	55953333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
transcript_4066.known	chr1	-	447	1	FSM	ENSMUSG00000099471.2	ENSMUST00000170338.3	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACCGGAGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	127210845	127210398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_127210400_127210800
transcript_4067.known	chr1	-	3488	8	FSM	ENSMUSG00000026347.14	ENSMUST00000185560.2	3488	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	2.65729646253404	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCGAATCTGCATATCTC	NA	False	NA	NA	False	AATAAA	-15	NA	127607285	127418634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_127419398_127423454_127423597_127427920_127428033_127447081_127447179_127479062_127479155_127480497_127480542_127596387_127596508_127605167
transcript_40671.known	chr14	-	2153	15	FSM	ENSMUSG00000040472.16	ENSMUST00000228899.2	2153	15	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_14	124.625418346175	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGCCCTGACAACACTT	NA	False	NA	1	True	AATAAA	-39	NA	55959638	55953761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
transcript_40695.known	chr14	-	2547	16	FSM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_12	87.1219834484959	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959633	55953333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300
transcript_40696.known	chr14	-	1477	9	FSM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	15.4833580014156	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	0	True	AATAAA	-20	NA	55983147	55976476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981259_55982374_55982546_55982897
transcript_40703.known	chr14	+	3694	10	FSM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	0	0	0	0	multi-exon	FALSE	canonical	3	658	junction_1	26.1788718880958	301	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGCAGTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	55983149	55992957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_55983478_55983617_55984068_55986788_55986900_55987448_55987591_55988509_55988703_55989514_55989656_55989993_55990120_55990268_55990506_55990716_55990823_55991097
transcript_40716.known	chr14	-	1865	10	FSM	ENSMUSG00000022221.15	ENSMUST00000178399.3	1865	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	41.6620738209433	367	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTCTGAGGTGTCAA	NA	False	NA	-3	True	AATAAA	-18	NA	56026314	56022453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025822_56026073
transcript_40718.known	chr14	+	3267	10	FSM	ENSMUSG00000023411.13	ENSMUST00000024179.6	3267	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	7.13537527022325	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGCTCCAGAGCTCTT	NA	False	NA	18	True	AATAAA	-18	NA	56062251	56071400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_56062594_56063614_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679_56070262_56071013
transcript_40719.known	chr14	+	3775	9	FSM	ENSMUSG00000023411.13	ENSMUST00000172271.9	3775	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	5.95818764390649	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTCAGGCTCCAGAGCTC	NA	False	NA	16	True	AATAAA	-16	NA	56062493	56071398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_56062594_56063614_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679
transcript_40721.known	chr14	+	7511	8	FSM	ENSMUSG00000075592.11	ENSMUST00000168479.3	7511	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	7.49965985623239	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATGTTTAATTTTTTTT	NA	False	NA	15	True	AATAAA	-15	NA	56091473	56112193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_56091884_56100409_56101069_56101189_56102591_56103415_56103547_56103667_56103765_56105477_56105580_56105870_56105973_56107584
transcript_40728.known	chr14	+	3898	8	FSM	ENSMUSG00000047153.5	ENSMUST00000022831.5	3898	8	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	8.07111250961459	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGATTGGTGTCTTCTCTTT	NA	False	NA	NA	False	GGGGCT	-23	NA	56122403	56134238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_56122600_56123230_56123449_56123948_56125076_56125170_56125302_56125377_56125475_56131448_56131557_56131743_56131846_56132319
transcript_40734.known	chr14	+	5882	8	FSM	ENSMUSG00000047153.5	ENSMUST00000228462.2	5882	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	26.9996220684056	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTATGGTGGCTACTACTC	NA	False	NA	6	True	NA	NA	NA	56122473	56136232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_56122600_56123230_56123449_56123948_56125076_56125170_56125302_56125377_56125475_56131448_56131617_56131743_56131846_56132319
transcript_40737.known	chr14	-	792	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227163.2	792	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	71.6753793153549	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGCTCCAGCATCTACAA	NA	False	NA	NA	False	NA	NA	NA	56137641	56135291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137483
transcript_40738.known	chr14	-	1255	6	FSM	ENSMUSG00000022223.10	ENSMUST00000111325.5	1255	6	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	35.4547599061113	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137715	56134739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137646
transcript_40739.known	chr14	-	1023	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227032.2	1023	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	63.0441115410472	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAGAAGTGGGTCAGGT	NA	False	NA	NA	False	NA	NA	NA	56137668	56135015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_56135470_56135699_56135935_56136640_56136763_56137103_56137187_56137270_56137378_56137646
transcript_40744.nic	chr14	+	2688	4	ISM	ENSMUSG00000047153.5	ENSMUST00000022831.5	3898	8	-9	7930	-9	-7584	intron_retention	FALSE	canonical	3	63	junction_2	8.64098759787715	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGCAAAAAGTGATAAATAAA	NA	False	NA	NA	False	AATAAA	-1	NA	56122394	56126308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_56122600_56123230_56123449_56123948_56125076_56125170
transcript_40747.known	chr14	-	385	4	FSM	ENSMUSG00000022223.10	ENSMUST00000228151.2	385	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	32.0312347560939	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAAGCAGTTGAGGCACT	NA	False	NA	NA	False	NA	NA	NA	56137669	56136590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_56136763_56137103_56137187_56137270_56137378_56137646
transcript_40750.nnic	chr14	+	4072	24	NNC	ENSMUSG00000022229.4	novel	3950	23	NA	NA	-263	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	2.5956194011477	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAAGTGTCATTGTGGCA	NA	False	NA	5	True	AGTAAA	-14	NA	56602261	56626007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_56602417_56602557_56602747_56603405_56603556_56605839_56605900_56608232_56608434_56609195_56609310_56610035_56610171_56610299_56610418_56610644_56610914_56611883_56612083_56612216_56612327_56613594_56613730_56615739_56615933_56617404_56617581_56618219_56618357_56619953_56620105_56621523_56621693_56621782_56621938_56623249_56623374_56623568_56623715_56624304_56624439_56624606_56624709_56625096_56625189_56625349
transcript_40751.known	chr14	+	3950	23	FSM	ENSMUSG00000022229.4	ENSMUST00000007340.4	3950	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_18	2.50989776223246	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAAGTGTCATTGTGGCA	NA	False	NA	5	True	AGTAAA	-14	NA	56602524	56626007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_56602747_56603405_56603556_56605839_56605900_56608232_56608434_56609195_56609310_56610035_56610171_56610299_56610418_56610644_56610914_56611883_56612083_56612216_56612327_56613594_56613730_56615739_56615933_56617404_56617581_56618219_56618357_56619953_56620105_56621523_56621693_56621782_56621938_56623249_56623374_56623568_56623715_56624304_56624439_56624606_56624709_56625096_56625189_56625349
transcript_40752.known	chr14	+	5264	37	FSM	ENSMUSG00000000365.10	ENSMUST00000095793.3	5264	37	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_25	208.622769314721	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGTTCATGTTATTAAG	NA	False	NA	17	True	AATAAA	-18	NA	56640037	56762489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56730574_56730862_56737884_56738049_56741374_56741495_56743383_56743465_56745274_56745401_56746735_56746793_56749667_56749785_56751492_56751662_56753792_56753929_56759830_56760021_56761762_56761863_56762269
transcript_40755.nic	chr14	+	3580	26	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	42	0	combination_of_known_junctions	FALSE	canonical	3	349	junction_12	57.9852946875326	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640079	56726892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
transcript_40779.known	chr14	+	1609	11	FSM	ENSMUSG00000000365.10	ENSMUST00000225361.2	1609	11	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_4	33.16700167335	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTCCTGCCTCTTGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	56640156	56679370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987
transcript_4079.known	chr1	+	4511	10	FSM	ENSMUSG00000026349.15	ENSMUST00000112570.2	4511	10	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_9	104.758039851747	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGATTGTGTGAACTATT	NA	False	NA	27	True	ATTAAA	-21	NA	127701900	127733669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898_127731031_127731128
transcript_40794.nic	chr14	-	4372	17	NIC	ENSMUSG00000064128.9	novel	4756	18	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_16	11.6039796513955	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTTACATTCTTTGAA	2362	False	NA	NA	False	AATAAA	-45	NA	56809333	56764217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_56764569_56767144_56767266_56767346_56767432_56767506_56767648_56769692_56769807_56770032_56770098_56772212_56772298_56772807_56773051_56780221_56780388_56786880_56787014_56789379_56791007_56791116_56791220_56792546_56792659_56796029_56796294_56801409_56801534_56802125_56802625_56809194
transcript_40805.known	chr14	-	4756	18	FSM	ENSMUSG00000064128.9	ENSMUST00000225951.2	4756	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	22.1063801089751	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTTACATTCTTTGAA	NA	False	NA	NA	False	AATAAA	-45	NA	56812839	56764217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_56764569_56767144_56767266_56767346_56767432_56767506_56767648_56769692_56769807_56770032_56770098_56772212_56772298_56772807_56773051_56780221_56780388_56786880_56787035_56789379_56791007_56791116_56791220_56792546_56792659_56796029_56796294_56801409_56801534_56802125_56802625_56809194_56809659_56812801
transcript_40813.known	chr14	+	2939	14	FSM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_4	88.7108193370776	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1778	False	NA	32	True	ATTAAA	-18	NA	56905704	56934887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
transcript_40818.nic	chr14	+	590	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-30	23453	-30	0	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAAATAAAGTG	1748	False	NA	-37	True	NA	NA	NA	56905674	56911434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_56906022_56909861_56910018_56911347
transcript_40819.nic	chr14	+	648	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-30	23395	-30	58	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGACAAAAATGGGAAAACTA	1748	False	NA	21	True	AATAAA	-42	NA	56905674	56911492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_56906022_56909861_56910018_56911347
transcript_40820.nic	chr14	+	738	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-30	23305	-30	148	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTGGGAAGTCAAGGAA	1748	False	NA	111	True	AAGAAA	-2	NA	56905674	56911582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_56906022_56909861_56910018_56911347
transcript_40821.nic	chr14	+	804	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-30	23239	-30	214	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAGGAATTAAAGAAAGCT	1748	False	NA	NA	False	AATAAA	-6	NA	56905674	56911648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_56906022_56909861_56910018_56911347
transcript_40822.nic	chr14	+	899	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-30	23144	-30	309	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGATATATAGAATCTCC	1748	False	NA	NA	False	ATTAAA	-40	NA	56905674	56911743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_56906022_56909861_56910018_56911347
transcript_40825.known	chr14	-	4114	9	FSM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	29.8556422640679	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTGTTTTATTGGAAT	NA	False	NA	NA	False	AATAAA	-15	NA	57015773	56958166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247
transcript_40830.known	chr14	-	601	5	FSM	ENSMUSG00000021938.13	ENSMUST00000168575.2	601	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	150.347929816143	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAACCAAACTATATGGAA	NA	False	NA	NA	False	NA	NA	NA	57015384	56986314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57015247
transcript_40836.known	chr14	-	5357	8	FSM	ENSMUSG00000040123.18	ENSMUST00000173954.3	5357	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	29.0123126571166	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTCTTTGGTGAAAATGA	9073	False	NA	-13	True	AATAAA	-28	NA	57048921	57028044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57048790
transcript_40837.known	chr14	-	5351	8	FSM	ENSMUSG00000040123.18	ENSMUST00000111285.9	5351	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	24.4798959581623	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTCTTTGGTGAAAATGA	8821	False	NA	-13	True	AATAAA	-28	NA	57049173	57028044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57049048
transcript_40840.known	chr14	-	5290	8	FSM	ENSMUSG00000040123.18	ENSMUST00000039812.16	5290	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	33.8013403912463	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTGGTGAAAATGAGAT	8821	False	NA	-10	True	AATAAA	-31	NA	57049173	57028041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57047997_57048054_57049048
transcript_40842.nic	chr14	-	2921	7	NIC	ENSMUSG00000040123.18	novel	5290	8	NA	NA	-40	390	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTCAGACTTGATTTAT	8781	False	NA	-14	True	NA	NA	NA	57049213	57030394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_40843.nic	chr14	-	2531	7	NIC	ENSMUSG00000040123.18	novel	2455	7	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAAGAAGGAAA	8781	False	NA	NA	False	NA	NA	NA	57049213	57030784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_40845.nic	chr14	-	1404	7	NIC	ENSMUSG00000040123.18	novel	5290	8	NA	NA	-40	-1127	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAATGCTATCAGAGAAGAA	8781	False	NA	NA	False	NA	NA	NA	57049213	57031911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_40849.known	chr14	-	2455	7	FSM	ENSMUSG00000040123.18	ENSMUST00000225699.2	2455	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	29.1547594742265	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAAGAAGGAAA	8840	False	NA	NA	False	NA	NA	NA	57049154	57030784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57031958_57034060_57034268_57035141_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_40850.known	chr14	-	2589	4	FSM	ENSMUSG00000040123.18	ENSMUST00000224498.2	2589	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	20.4015249974658	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	8904	False	NA	NA	False	NA	NA	NA	57049090	57034642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57036650_57041605_57041697_57041871_57042321_57049048
transcript_40852.nic	chr14	+	4815	25	NIC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	-120	0	combination_of_known_junctions	TRUE	canonical	2	100	junction_12	26.7082683306541	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTGTTTGTTTGT	NA	False	NA	21	True	AATAAA	-17	NA	57123989	57197809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_57124156_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
transcript_40853.nic	chr14	+	5044	25	NIC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	-120	229	combination_of_known_junctions	FALSE	canonical	2	100	junction_12	26.7082683306541	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTATATATGTGTAAGT	NA	False	NA	68	True	NA	NA	NA	57123989	57198038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_57124156_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
transcript_40864.nic	chr14	+	2765	15	NIC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	-120	-121	combination_of_known_junctions	TRUE	canonical	2	100	junction_12	24.403914038698	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGATGAAGAATAAAGCAAT	NA	False	NA	NA	False	NA	NA	NA	57123989	57179490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_57124156_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454
transcript_40865.known	chr14	+	1281	3	FSM	ENSMUSG00000021945.10	ENSMUST00000223669.2	1281	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	21.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTCATGTTTTTATT	NA	False	NA	NA	False	AATAAA	-17	NA	57124109	57141324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_57124156_57125251_57125315_57140152
transcript_40867.known	chr14	-	284	2	FSM	ENSMUSG00000048582.8	ENSMUST00000223792.2	284	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTGACCGTGCTGTTC	NA	False	NA	NA	False	NA	NA	NA	57295180	57274300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57274388_57294983
transcript_40869.known	chr14	-	2766	2	FSM	ENSMUSG00000048582.8	ENSMUST00000061614.8	2766	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCGCTGTGTAAGAACGTG	NA	False	NA	NA	False	AATAAA	-15	NA	57295557	57271916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57274388_57295262
transcript_4087.known	chr1	+	6738	9	FSM	ENSMUSG00000026349.15	ENSMUST00000027587.15	6738	9	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_6	47.8289595851718	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGGCTGAAACATGTTT	NA	False	NA	8	True	AATAAA	-22	NA	127701900	127735798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898
transcript_40870.known	chr14	-	2406	2	FSM	ENSMUSG00000046352.8	ENSMUST00000055698.8	2406	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATGGTAAGTTTTTCTGG	NA	False	NA	NA	False	ATTAAA	-36	NA	57342159	57336056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57338229_57341925
transcript_40873.known	chr14	-	1497	8	FSM	ENSMUSG00000021947.12	ENSMUST00000022517.9	1497	8	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_7	4.40778532015472	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAATCTATTTCTACAC	NA	False	NA	37	True	AATAAA	-16	NA	57635986	57512449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600378_57600506_57620214_57620323_57635864
transcript_40876.known	chr14	+	3088	26	FSM	ENSMUSG00000040040.17	ENSMUST00000122063.8	3088	26	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_12	10.0195009855781	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGAGGCTAATGACTTC	NA	False	NA	13	True	AATAAA	-15	NA	57661518	57755393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_57661645_57667994_57668091_57672251_57672315_57674683_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629_57733737_57744661_57744729_57754437_57754549_57754793
transcript_40879.nic	chr14	+	2293	23	ISM	ENSMUSG00000040040.17	ENSMUST00000122063.8	3088	26	-17	21691	-17	8634	5prime_fragment	TRUE	canonical	3	32	junction_12	10.5282971710678	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGTTGGAAAAAATGAAAG	NA	False	NA	NA	False	ATTAAA	-31	NA	57661501	57733702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_57661645_57667994_57668091_57672251_57672315_57674683_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629
transcript_40883.known	chr14	+	1274	3	FSM	ENSMUSG00000050222.12	ENSMUST00000089494.6	1274	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	7	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAAAGCCACTGGTCT	NA	False	NA	10	True	ATTAAA	-22	NA	57762233	57780623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_57762379_57762760_57763057_57779790
transcript_40884.nic	chr14	+	1239	2	ISM	ENSMUSG00000050222.12	ENSMUST00000089494.6	1274	3	417	0	417	0	3prime_fragment	FALSE	canonical	3	29	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAAAGCCACTGGTCT	NA	False	NA	10	True	ATTAAA	-22	NA	57762650	57780623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_57763057_57779790
transcript_40885.known	chr14	-	836	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTCATGAGGTTGAG	NA	False	NA	-9	True	AATAAA	-19	NA	57809026	57787054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
transcript_40887.nnic	chr14	-	687	4	NIC	ENSMUSG00000021951.8	novel	880	5	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	119.268138615847	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTCATGAGGTTGAGA	NA	False	NA	-8	True	AATAAA	-20	NA	57809039	57787053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_57787337_57787818_57788100_57795490_57795574_57808999
transcript_40890.nic	chr14	-	3910	24	NIC	ENSMUSG00000021952.17	novel	8680	23	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	2	67	junction_22	80.9376057852328	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACAGAGCTATAAGCTT	NA	False	NA	NA	False	NA	NA	NA	57902712	57819727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57880791_57880947_57885875_57885982_57902344
transcript_40891.known	chr14	-	8680	23	FSM	ENSMUSG00000021952.17	ENSMUST00000174545.9	8680	23	0	0	0	0	multi-exon	FALSE	canonical	2	168	junction_17	47.2351467755642	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGGTTTGACCATGTG	NA	False	NA	-18	True	ACTAAA	-13	NA	57902887	57814977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57885875_57885982_57902344
transcript_40903.known	chr14	-	1078	5	FSM	ENSMUSG00000021952.17	ENSMUST00000172524.2	1078	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	126.317061397105	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	57902887	57879485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57879618_57880538_57880681_57880791_57880947_57885875_57885982_57902344
transcript_40905.known	chr14	-	707	4	FSM	ENSMUSG00000021952.17	ENSMUST00000172539.8	707	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	139.907906217705	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGAGAGATGGCTCAGCA	NA	False	NA	NA	False	AAAAAG	-15	NA	57902421	57879235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57879618_57880538_57880681_57885875_57885982_57902344
transcript_40906.known	chr14	-	1765	4	FSM	ENSMUSG00000021952.17	ENSMUST00000173172.2	1765	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	124.493641069199	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAGAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	57902424	57879256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57880681_57880791_57880947_57885875_57885982_57902344
transcript_40908.known	chr14	-	3456	23	FSM	ENSMUSG00000021952.17	ENSMUST00000089482.12	3456	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_17	74.741551942523	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACAGAGCTATAAGCTT	NA	False	NA	NA	False	NA	NA	NA	57902413	57819727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855704_57866816_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57885875_57885982_57902344
transcript_40909.known	chr14	-	5191	8	FSM	ENSMUSG00000021959.17	ENSMUST00000022531.14	5191	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	7.14856914468389	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTTCATTTGTGGTGTT	NA	False	NA	NA	False	ATTAAA	-14	NA	57983580	57927118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_57929228_57931770_57931878_57933576_57933760_57934372_57934956_57936714_57938016_57940378_57940512_57971334_57971876_57983346
transcript_40916.nnic	chr14	-	2200	9	NNC	ENSMUSG00000021965.4	novel	2260	9	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	72.2253418129676	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTATGTTGCCAACTC	NA	False	NA	-7	True	AATAAA	-19	NA	58063648	58044017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_58044989_58045431_58045536_58047399_58047513_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
transcript_40918.known	chr14	-	2260	9	FSM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_3	28.547110186497	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTATGTTGCCAACTC	NA	False	NA	-7	True	AATAAA	-19	NA	58063620	58044017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
transcript_40929.known	chr14	+	5125	4	FSM	ENSMUSG00000021963.18	ENSMUST00000128764.9	5125	4	0	0	0	0	multi-exon	FALSE	canonical	3	2836	junction_1	125.222468697381	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGGAATTTTTCCACTT	NA	False	NA	NA	False	NA	NA	NA	58035636	58044095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378
transcript_40933.known	chr14	+	459	3	FSM	ENSMUSG00000021963.18	ENSMUST00000111269.2	459	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1417.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCCCACAACTTCCGCAG	NA	False	NA	NA	False	AATAAA	-14	NA	58035674	58042426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_58035812_58035944_58036055_58042214
transcript_40935.known	chr14	+	2877	2	FSM	ENSMUSG00000021967.5	ENSMUST00000022538.5	2877	2	0	0	0	0	multi-exon	FALSE	canonical	3	956	junction_1	0	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTGCTGACCTACAAATA	NA	False	NA	NA	False	AATAAA	-12	NA	58063690	58066753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_58063780_58063965
transcript_40936.known	chr14	+	519	1	FSM	ENSMUSG00000021967.5	ENSMUST00000224313.2	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTGTCTCATACGGAA	NA	False	NA	25	True	ATTAAA	-17	NA	58063886	58064405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_58063900_58064400
transcript_40943.known	chr14	-	5186	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAAATCTGTTACAGGTG	NA	False	NA	58	True	NA	NA	NA	58127733	58070159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_40949.nnic	chr14	-	1820	12	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-84	708	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	65.9081504635099	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACAATCCCAAATGATT	NA	False	NA	NA	False	NA	NA	NA	58127817	58072440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_58073012_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_40951.nic	chr14	-	2912	12	NIC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-84	708	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	61.0282416672129	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACAATCCCAAATGATT	NA	False	NA	NA	False	NA	NA	NA	58127817	58072440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_58074104_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_40964.known	chr14	-	2356	4	FSM	ENSMUSG00000021969.9	ENSMUST00000225955.2	2356	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	20.4015249974658	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAACAGAGCA	NA	False	NA	NA	False	NA	NA	NA	58127677	58101031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_58103099_58111349_58111454_58115889_58115917_58127519
transcript_40966.known	chr14	-	2329	12	FSM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_3	66.5872943480589	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTCTCTCATCCATTC	NA	False	NA	-1	True	NA	NA	NA	58236719	58153717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_58154833_58156279_58156438_58156800_58156910_58161396_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107_58209247_58236486
transcript_40968.nic	chr14	-	1048	9	ISM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	-16	7594	-16	91	5prime_fragment	FALSE	canonical	3	228	junction_1	35.692261065951	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGACTACCCTGTGTGCC	NA	False	NA	NA	False	AGTAAA	-17	NA	58236735	58161311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107_58209247_58236486
transcript_40970.nic	chr14	-	957	9	ISM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	-16	7685	-16	0	5prime_fragment	FALSE	canonical	3	228	junction_1	35.692261065951	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAGGTTGGTATTCCTTT	NA	False	NA	16	True	AATAAA	-40	NA	58236735	58161402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107_58209247_58236486
transcript_40972.nic	chr14	-	1014	8	ISM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	-16	10713	-16	-3028	5prime_fragment	FALSE	canonical	3	276	junction_1	23.3168065864036	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTTATTTGGGAAATTT	NA	False	NA	NA	False	NA	NA	NA	58236735	58164430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107_58209247_58236486
transcript_40985.nnic	chr14	+	4064	13	NIC	ENSMUSG00000035469.18	novel	3957	13	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	2	16	junction_2	111.314463221193	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	6	True	AATAAA	-16	NA	59438613	59474714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_59439034_59443073_59443172_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
transcript_40990.known	chr14	+	3957	13	FSM	ENSMUSG00000035469.18	ENSMUST00000022551.14	3957	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	116.922338897806	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	6	True	AATAAA	-16	NA	59438690	59474714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_59439034_59447191_59447260_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
transcript_40992.known	chr14	+	3903	12	FSM	ENSMUSG00000035469.18	ENSMUST00000043227.13	3903	12	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	28.7856139459962	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	6	True	AATAAA	-16	NA	59438676	59474714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
transcript_40996.nnic	chr14	+	3812	12	NIC	ENSMUSG00000035469.18	novel	3903	12	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	7	junction_1	92.2668605389769	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	6	True	AATAAA	-16	NA	59438675	59474714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_59439034_59447465_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
transcript_40998.nic	chr14	+	3799	12	NIC	ENSMUSG00000035469.18	novel	3903	12	NA	NA	-157	0	combination_of_known_junctions	FALSE	canonical	2	14	junction_1	90.3297906251319	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	6	True	AATAAA	-16	NA	59438500	59474714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_59438754_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
transcript_41.known	ERCC-00116	+	1977	1	FSM	ERCC-00116A	DQ668367	1977	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	171	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00116_+_0_2000
transcript_41009.known	chr14	+	2163	13	FSM	ENSMUSG00000035469.18	ENSMUST00000174009.8	2163	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	114.373747716277	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGTTTTACATGTGTT	NA	False	NA	54	True	NA	NA	NA	59438682	59472974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_59439034_59443073_59443172_59447465_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
transcript_41014.nnic	chr14	-	1425	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5171	0	at_least_one_novel_splicesite	FALSE	canonical	3	278	junction_1	39.5924235176378	277	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59608090	59586180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
transcript_4102.known	chr1	+	1040	5	FSM	ENSMUSG00000026349.15	ENSMUST00000149760.8	1040	5	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	23.7539470404394	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127701900	127723537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991
transcript_41023.nnic	chr14	-	1595	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5171	0	intron_retention	FALSE	canonical	3	300	junction_3	34.2669260690571	156	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59608090	59586180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
transcript_41026.nnic	chr14	-	1137	9	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5087	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	114.076728564594	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59608006	59586180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_59586501_59586670_59586838_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
transcript_4103.known	chr1	+	665	4	FSM	ENSMUSG00000026349.15	ENSMUST00000125760.8	665	4	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_3	16.8193010820572	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCCCATGGCTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	127701900	127721326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094
transcript_41040.known	chr14	-	2995	14	FSM	ENSMUSG00000071350.13	ENSMUST00000161459.8	2995	14	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_12	10.965249034588	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTTGTGATTATTAT	NA	False	NA	NA	False	TATAAA	-13	NA	59678333	59639457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
transcript_41052.known	chr14	+	3037	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGGTCTCATTCCTCT	NA	False	NA	5	True	AATAAA	-12	NA	59678429	59786352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
transcript_41054.known	chr14	+	1380	11	FSM	ENSMUSG00000021981.11	ENSMUST00000225595.2	1380	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	95.6287090783934	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGTGTCATCTTTACT	NA	False	NA	NA	False	AATAAA	-18	NA	59678429	59823213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59822952
transcript_41059.known	chr14	-	2202	10	FSM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	34.1362556619393	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAACAAATAAAATGTTA	NA	False	NA	-32	True	NA	NA	NA	59835393	59801424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_4106.known	chr1	+	4243	24	FSM	ENSMUSG00000036104.13	ENSMUST00000037649.6	4243	24	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	17.6995509005001	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGACTTGTGGCTTT	3029	False	NA	18	True	AATAAA	-15	NA	127796509	127871605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_127796567_127796661_127796718_127801816_127801893_127816892_127817026_127818754_127818834_127829315_127829436_127831408_127831575_127837587_127837688_127843375_127843458_127845957_127846027_127847304_127847379_127852464_127852558_127853011_127853179_127855196_127855287_127855685_127855859_127858126_127858182_127858443_127858816_127862153_127862292_127865074_127865303_127865725_127865823_127865934_127866039_127866311_127866428_127866782_127866886_127870110
transcript_41060.known	chr14	-	1892	10	FSM	ENSMUSG00000021982.15	ENSMUST00000171683.3	1892	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	37.821543276319	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGCTTCATAGTGTATA	NA	False	NA	NA	False	AATAAA	-29	NA	59835393	59805177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_59805488_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_41063.known	chr14	-	2579	5	FSM	ENSMUSG00000021982.15	ENSMUST00000225103.2	2579	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	7.29297607290741	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATAGGGTCGTTTTG	NA	False	NA	NA	False	TATAAA	-37	NA	59835395	59822021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_41064.known	chr14	+	3119	2	FSM	ENSMUSG00000044461.7	ENSMUST00000053949.7	3119	2	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCGGGGAATGCTTATT	NA	False	NA	5	True	AATAAA	-17	NA	59862756	59869109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_59863850_59867083
transcript_41065.known	chr14	-	3913	15	FSM	ENSMUSG00000114797.2	ENSMUST00000041905.8	3913	15	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	25.178546099278	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGTAGGTCTCAGCA	NA	False	NA	-16	True	AATAAA	-18	NA	60488956	60455526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_60457608_60459031_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
transcript_41066.nnic	chr14	-	3782	15	NNC	ENSMUSG00000114797.2	novel	3913	15	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	59.493954417612	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGTAGGTCTCAGCA	NA	False	NA	-16	True	AATAAA	-18	NA	60488876	60455526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_60457608_60459031_60459128_60460816_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
transcript_41069.known	chr14	-	2936	14	FSM	ENSMUSG00000114797.2	ENSMUST00000225111.2	2936	14	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	24.6028814399438	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAAGTTTCTGGTAGCT	NA	False	NA	NA	False	CATAAA	-15	NA	60488894	60457865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
transcript_41075.nic	chr14	-	949	8	ISM	ENSMUSG00000114797.2	ENSMUST00000225111.2	2936	14	-4	18181	-4	0	5prime_fragment	FALSE	canonical	3	198	junction_1	21.7048851832099	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGAAATTAGCCGAATG	NA	False	NA	NA	False	NA	NA	NA	60488898	60476046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
transcript_41076.known	chr14	+	3813	14	FSM	ENSMUSG00000021987.10	ENSMUST00000022563.9	3813	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	13.0256915000032	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGAGTGTTTTTCTTTT	NA	False	NA	9	True	ATTAAA	-13	NA	60502676	60539819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_60502811_60514577_60514695_60517531_60517695_60519385_60519544_60522365_60522495_60526991_60527127_60529442_60529576_60530366_60530477_60530832_60530959_60533568_60533619_60534022_60534224_60535511_60535644_60536363_60536491_60537721
transcript_41086.known	chr14	+	3442	20	FSM	ENSMUSG00000021993.11	ENSMUST00000224635.2	3442	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	57.8253651366388	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATCCCGGACTAGGATTA	NA	False	NA	NA	False	NA	NA	NA	61022033	61142809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_61022320_61024743_61024918_61025602_61025692_61028335_61028423_61033620_61033685_61039569_61039753_61040261_61040419_61046416_61046466_61048547_61048609_61052401_61052455_61064747_61064902_61066835_61066914_61068561_61068767_61071433_61071544_61080656_61080732_61083832_61083953_61109466_61109589_61112682_61112757_61140816_61141928_61142619
transcript_41090.known	chr14	+	3015	19	FSM	ENSMUSG00000021993.11	ENSMUST00000063562.9	3015	19	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_10	24.3726850752595	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGGTATCTGGTAGCGC	NA	False	NA	NA	False	ATTAAA	-26	NA	61022021	61141678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_61022320_61024743_61024918_61025602_61025692_61028335_61028423_61033620_61033685_61039569_61039753_61040261_61040419_61046416_61046466_61048547_61048609_61052401_61052455_61064747_61064902_61066835_61066914_61068561_61068767_61071433_61071544_61080656_61080732_61083832_61083953_61109466_61109589_61112682_61112757_61140816
transcript_41107.known	chr14	-	3958	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111236.4	3958	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_9	15.475986974649	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATTGATACTTGTTA	NA	False	NA	-26	True	AATACA	-32	NA	61275399	61201323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
transcript_41108.known	chr14	-	4051	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111234.10	4051	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_9	13.3813948598441	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAGAACAGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	61283918	61201484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
transcript_41112.nnic	chr14	-	3545	6	NNC	ENSMUSG00000060548.14	novel	3958	10	NA	NA	-6355	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	25.9615099714943	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATTGATACTTGTTA	NA	False	NA	-26	True	AATACA	-32	NA	61219689	61201323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61219532
transcript_41119.nic	chr14	+	3164	9	NIC	ENSMUSG00000048279.20	novel	4581	8	NA	NA	-5	754	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	3.93700393700591	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAAAATTGAAGACTACA	NA	False	NA	NA	False	AATAGA	-45	NA	61410433	61440908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_61410665_61410746_61410898_61416670_61416759_61418393_61418480_61421400_61421513_61427050_61427198_61428546_61430042_61430836_61430929_61440146
transcript_41121.known	chr14	+	1482	2	FSM	ENSMUSG00000043157.9	ENSMUST00000055159.8	1482	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTGCATGCATGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	61547201	61549385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_61547387_61548088
transcript_41122.known	chr14	-	10092	4	FSM	ENSMUSG00000021928.10	ENSMUST00000022494.10	10092	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	24.8506650928211	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGCCTGTGGTCCTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	61597888	61569190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_61578854_61579536_61579676_61584820_61584891_61597668
transcript_41123.known	chr14	-	3780	2	FSM	ENSMUSG00000021928.10	ENSMUST00000225112.2	3780	2	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATACAT	NA	False	NA	NA	False	NA	NA	NA	61597857	61581299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_61584891_61597668
transcript_41124.known	chr14	-	4069	17	FSM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	0	0	0	0	multi-exon	TRUE	canonical	2	379	junction_16	73.5790391347971	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATTGAAAGACTTATT	6546	False	NA	-12	True	AATAAA	-22	NA	61677323	61602659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
transcript_41126.nic	chr14	-	1428	12	ISM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	-317	7751	-317	-2647	5prime_fragment	FALSE	canonical	2	379	junction_11	80.9639242180947	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTAAAGGCATGCACTG	6229	False	NA	NA	False	AATAAA	-1	NA	61677640	61610410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
transcript_41130.known	chr14	-	4002	5	FSM	ENSMUSG00000021930.15	ENSMUST00000022497.15	4002	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	8.67467578644874	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGTTACCTTACTCAAT	NA	False	NA	NA	False	NA	NA	NA	61794335	61769441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61793969
transcript_41133.known	chr14	-	1459	4	FSM	ENSMUSG00000021930.15	ENSMUST00000100496.5	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	60.8075287736277	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTCAGTATTATATTTA	NA	False	NA	NA	False	AATAAA	-13	NA	61794207	61771753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_61772691_61783130_61783298_61787192_61787310_61793969
transcript_41134.known	chr14	+	1619	3	FSM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	100	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61835695	61843395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_61835796_61837242_61837345_61841978
transcript_41135.known	chr14	+	1550	3	FSM	ENSMUSG00000035235.14	ENSMUST00000039562.8	1550	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	49	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61836988	61843395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_61837020_61837242_61837345_61841978
transcript_41136.nnic	chr14	+	1664	3	NNC	ENSMUSG00000035235.14	novel	1550	3	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	103	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61837008	61843395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_61837154_61837242_61837345_61841978
transcript_41137.known	chr14	-	3544	3	FSM	ENSMUSG00000097589.10	ENSMUST00000180917.9	3544	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	6	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGACTTGCTTTTCTCG	NA	False	NA	NA	False	AATAAA	-24	NA	61886271	61869797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_61873041_61880808_61880905_61886066
transcript_41140.known	chr14	+	1494	11	FSM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	0	0	0	0	multi-exon	TRUE	canonical	3	538	junction_2	112.951139879153	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCATAGTTTTGTTGCT	NA	False	NA	5	True	AATAAA	-17	NA	62569516	62610441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
transcript_41147.nnic	chr14	+	897	10	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	8	-481	combination_of_known_splicesites	FALSE	canonical	3	239	junction_2	190.414168473765	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTTGCCTATTCTG	NA	False	NA	15	True	AATAAA	-24	NA	62569524	62609960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
transcript_41148.nnic	chr14	+	1290	10	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	22	-74	combination_of_known_splicesites	FALSE	canonical	3	239	junction_2	190.414168473765	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAATCTTGCCCCTTTCC	NA	False	NA	15	True	AATAAA	-17	NA	62569538	62610367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
transcript_41156.known	chr14	-	1314	2	FSM	ENSMUSG00000048281.10	ENSMUST00000063169.10	1314	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGTCTAGCTTCTCTTAC	667	False	NA	NA	False	ATTAAA	-13	NA	62530412	62513679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_62514558_62529976
transcript_41159.known	chr14	-	10883	18	FSM	ENSMUSG00000035161.8	ENSMUST00000223585.2	10883	18	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_12	114.295797874483	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGTCATTGAGTGG	NA	False	NA	NA	False	TTTAAA	-5	NA	62998561	62923252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951289_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
transcript_41160.nnic	chr14	-	3707	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	-2	-7205	intron_retention	FALSE	canonical	3	25	junction_12	129.812961002708	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTGTGGTTTAGGAAA	NA	False	NA	-6	True	AATAAA	-13	NA	62998620	62930457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938109_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951289_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
transcript_41163.nnic	chr14	-	3540	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	-2	-7372	intron_retention	FALSE	canonical	3	25	junction_12	129.812961002708	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTACTTTGTAATTTTT	NA	False	NA	NA	False	NA	NA	NA	62998620	62930624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938109_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951289_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
transcript_41165.nnic	chr14	-	3194	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	-2	-7718	intron_retention	FALSE	canonical	3	25	junction_12	129.812961002708	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTTGTAATCTTGTATT	NA	False	NA	-17	True	AGTAAA	-6	NA	62998620	62930970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938109_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951289_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
transcript_41166.nic	chr14	-	2886	16	ISM	ENSMUSG00000035161.8	ENSMUST00000223585.2	10883	18	-59	10880	-2	5806	5prime_fragment	FALSE	canonical	3	25	junction_10	114.612390255155	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGAAATTGATGCATTG	NA	False	NA	NA	False	AATATA	-22	NA	62998620	62934132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951289_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996
transcript_41168.known	chr14	-	2402	3	FSM	ENSMUSG00000035161.8	ENSMUST00000225193.2	2402	3	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	20.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGATTTCTAAATAAATAG	NA	False	NA	NA	False	ATTAAA	-15	NA	62998582	62995061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_62996800_62997614_62997693_62997996
transcript_41169.known	chr14	+	6646	12	FSM	ENSMUSG00000014547.11	ENSMUST00000014691.10	6646	12	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	5.80111132128866	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGTTGTATCCTTGTCA	NA	False	NA	22	True	AATAAA	-22	NA	63075126	63198958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_63075507_63123258_63123327_63137703_63137778_63162578_63162634_63167676_63167828_63171738_63171852_63181469_63181597_63186091_63186198_63189363_63189466_63190460_63190592_63192309_63192419_63193728
transcript_41179.known	chr14	+	618	3	FSM	ENSMUSG00000054763.10	ENSMUST00000067990.8	618	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	3	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCGTTTCAAATTCACC	NA	False	NA	28	True	AATAAA	-37	NA	63284439	63286059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_63284500_63284892_63285068_63285676
transcript_41180.known	chr14	-	721	3	FSM	ENSMUSG00000075571.9	ENSMUST00000111209.2	721	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCGAAGTATTGAGTGAG	NA	False	NA	NA	False	AATAAA	-20	NA	63287404	63271921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_63272277_63273378_63273551_63287210
transcript_41181.nnic	chr14	+	2061	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-12	1272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2965.53763928229	161	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	26	True	AATAAA	-21	NA	63359898	63380584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_63360015_63367085_63367180_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
transcript_41184.known	chr14	+	4743	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	0	0	0	0	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	5394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCTGTCATCATT	NA	False	NA	NA	False	ATTAAA	-18	NA	63359910	63383372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
transcript_412.known	chr1	-	1698	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCTGACTGGCCTGAGT	NA	False	NA	-1	True	AGTAAA	-40	NA	10108352	10094825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
transcript_41206.known	chr14	+	1269	1	FSM	ENSMUSG00000021939.9	ENSMUST00000225639.2	1269	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	63359962	63361231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_63360000_63361200
transcript_41208.known	chr14	-	1932	5	FSM	ENSMUSG00000035121.7	ENSMUST00000038229.5	1932	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.04633819296811	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAAGGTGGTGTTTTGTTTG	7085	False	NA	-5	True	AATAAA	-33	NA	63430990	63419891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_63421014_63423486_63423684_63425889_63426231_63429153_63429308_63430872
transcript_41209.known	chr14	-	3374	7	FSM	ENSMUSG00000021944.16	ENSMUST00000118022.8	3374	7	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	3.67045259092421	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCGAAGTCTTTTCTAA	NA	False	NA	NA	False	AATAAA	-19	NA	63482697	63436370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_63438001_63438926_63439082_63440759_63440848_63441107_63441234_63442037_63442205_63477984_63479095_63482599
transcript_41211.known	chr14	-	3400	7	FSM	ENSMUSG00000021944.16	ENSMUST00000067417.10	3400	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	3.90156663690654	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCGAAGTCTTTTCTAA	NA	False	NA	NA	False	AATAAA	-19	NA	63482720	63436370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_63438001_63438926_63439082_63440759_63440848_63441107_63441234_63442037_63442208_63477984_63479095_63482599
transcript_41213.known	chr14	+	4231	4	FSM	ENSMUSG00000035095.12	ENSMUST00000121288.2	4231	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.16024689946929	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATCCAAATAGAGACATT	NA	False	NA	NA	False	AATAAA	-16	NA	63673842	63702947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_63674082_63679361_63679463_63689319_63690089_63699825
transcript_41214.known	chr14	-	1881	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	0	0	0	0	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	863	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	-16	True	ATTAAA	-18	NA	63746541	63729795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
transcript_41251.nnic	chr14	-	5033	12	NNC	ENSMUSG00000035078.7	novel	2570	10	NA	NA	-49	-378	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.467814354144	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGCGTGAAATGTATGCTT	NA	False	NA	-4	True	AATGAA	-20	NA	63781480	63757477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_63759071_63760056_63761028_63761075_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
transcript_41252.nnic	chr14	-	4473	12	NNC	ENSMUSG00000035078.7	novel	2570	10	NA	NA	-49	-938	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.467814354144	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCTCATAATCTACTG	NA	False	NA	-13	True	AATAAA	-17	NA	63781480	63758037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_63759071_63760056_63761028_63761075_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
transcript_41253.nnic	chr14	-	4473	12	NNC	ENSMUSG00000035078.7	novel	2570	10	NA	NA	-49	-941	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.467814354144	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTCTCATAATCTA	NA	False	NA	-16	True	AATAAA	-14	NA	63781480	63758040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_63759064_63760046_63761028_63761075_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
transcript_4126.nnic	chr1	-	4118	21	NNC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_18	44.9547272263997	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	-5	True	AATAAA	-22	NA	128030199	127881920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968642_127985718_127985738_128019579_128019748_128029989
transcript_41261.known	chr14	-	2570	10	FSM	ENSMUSG00000035078.7	ENSMUST00000058679.7	2570	10	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_4	9.18936583472681	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGTGTGTGCCCTAGA	NA	False	NA	90	True	GATAAA	-16	NA	63781431	63760925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
transcript_41266.known	chr14	+	1295	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	11.9443152447793	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCCTTTCACATGA	4087	False	NA	NA	False	AATAAA	-39	NA	64097812	64157304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
transcript_41270.known	chr14	+	3299	2	FSM	ENSMUSG00000063060.7	ENSMUST00000079652.7	3299	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATTCTATCCTTTGAAAT	4683	False	NA	NA	False	AATAAA	-16	NA	64181121	64188181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_64181443_64185203
transcript_41271.known	chr14	-	1860	11	FSM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	33.9677788499631	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACCGCCTGCTGTGAGTC	NA	False	NA	-4	True	AATAAA	-20	NA	64693352	64360073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64678158_64678476_64688412_64688488_64689845_64689925_64690910_64691013_64692207_64692343_64693330
transcript_41275.known	chr14	+	8865	40	FSM	ENSMUSG00000060012.10	ENSMUST00000224503.2	8865	40	0	0	0	0	multi-exon	TRUE	canonical	2	39	junction_37	14.1361837027482	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCCGAGGTCAAGCATAA	NA	False	NA	10	True	AATAAA	-20	NA	64890050	65047066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_64890106_64907072_64907167_64945940_64945954_64951522_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747_64983939_64984377_64984589_64985894_64986058_64987661_64987809_64988954_64989105_64989416_64989546_64994862_64995034_64995999_64996158_64998117_64998251_65002451_65002599_65003159_65003190_65004802_65004903_65005061_65005189_65005868_65005925_65007990_65008113_65010359_65010537_65013685_65013779_65016762_65016916_65017139_65017218_65019790_65019845_65025856_65025969_65027013_65027148_65037793_65037857_65040422_65041180_65043479
transcript_41279.nic	chr14	+	1720	15	ISM	ENSMUSG00000060012.10	ENSMUST00000100473.5	5603	40	-27	61334	-27	20202	5prime_fragment	FALSE	canonical	2	40	junction_3	12.5405464842027	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGACATAGCTCACATCC	NA	False	NA	NA	False	NA	NA	NA	64889952	64982411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_64890106_64907072_64907167_64945940_64945954_64951522_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324
transcript_41281.known	chr14	+	3045	2	FSM	ENSMUSG00000060012.10	ENSMUST00000224507.2	3045	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAATGAGAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	64889990	64910002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_64890106_64907072
transcript_41286.nic	chr14	-	3434	11	NIC	ENSMUSG00000021972.15	novel	3396	11	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	11.4873843846195	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTGTCCGGGATTTCT	7644	False	NA	NA	False	AATAAA	-14	NA	65187340	65049048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_65050869_65054465_65054586_65063049_65063142_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_41287.known	chr14	-	3396	11	FSM	ENSMUSG00000021972.15	ENSMUST00000022544.14	3396	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	9.87167665596883	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTGTCCGGGATTTCT	7685	False	NA	NA	False	AATAAA	-14	NA	65187299	65049048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65050869_65054465_65054586_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_4129.known	chr1	-	4741	21	FSM	ENSMUSG00000036086.17	ENSMUST00000112538.4	4741	21	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_20	44.0595903294618	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATATATTCACGCAAACC	NA	False	NA	NA	False	NA	NA	NA	128030738	127882406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029511
transcript_41290.nic	chr14	-	2442	11	NIC	ENSMUSG00000021972.15	novel	3396	11	NA	NA	-20	-992	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	11.4873843846195	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTATTTGTATTTTTGT	7644	False	NA	NA	False	ATTAAA	-21	NA	65187340	65050040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_65050869_65054465_65054586_65063049_65063142_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_41295.known	chr14	-	2958	10	FSM	ENSMUSG00000021972.15	ENSMUST00000176128.8	2958	10	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	16.1245154965971	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACCAAACAGTGAACT	7664	False	NA	NA	False	GATAAA	-24	NA	65187320	65059666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65061148_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_41297.known	chr14	-	2931	10	FSM	ENSMUSG00000021972.15	ENSMUST00000067843.10	2931	10	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	17.1276975887408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACCAAACAGTGAACT	7688	False	NA	NA	False	GATAAA	-24	NA	65187296	65059666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65061148_65063049_65063142_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_41299.known	chr14	-	4740	4	FSM	ENSMUSG00000021972.15	ENSMUST00000176657.2	4740	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7688	False	NA	NA	False	AATATA	-21	NA	65187296	65121197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65125110_65134098_65134576_65140687_65140768_65187025
transcript_413.nic	chr1	-	1282	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	318.204272730071	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACGTGAAATTGTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	10108427	10095067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10108143
transcript_4130.known	chr1	-	4210	21	FSM	ENSMUSG00000036086.17	ENSMUST00000086614.12	4210	21	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	27.0654761642946	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	-5	True	AATAAA	-22	NA	128030199	127881920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
transcript_41302.known	chr14	+	2677	17	FSM	ENSMUSG00000021975.10	ENSMUST00000239450.2	2677	17	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTTCTATTGCACTACA	NA	False	NA	20	True	AATAAA	-20	NA	65187493	65277284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
transcript_41315.known	chr14	-	5977	7	FSM	ENSMUSG00000021978.10	ENSMUST00000022550.8	5977	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_6	16.5797734872612	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGGAGGTGTTTTGTTA	NA	False	NA	0	True	NA	NA	NA	65335555	65289508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65317828_65317925_65335445
transcript_41316.nic	chr14	-	5962	7	NIC	ENSMUSG00000021978.10	novel	5977	7	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_6	49.9355139710763	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGGAGGTGTTTTG	NA	False	NA	-3	True	NA	NA	NA	65387356	65289511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65317828_65317925_65387258
transcript_4132.nnic	chr1	-	4061	21	NNC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_20	44.9244922063678	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	-5	True	AATAAA	-22	NA	128030804	127881920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128030743
transcript_41320.nnic	chr14	-	5940	6	NIC	ENSMUSG00000021978.10	novel	6013	7	NA	NA	-62	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_5	51.808879547815	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGGAGGTGTTTTG	NA	False	NA	-3	True	NA	NA	NA	65335617	65289511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65335445
transcript_41328.nic	chr14	-	2919	3	ISM	ENSMUSG00000021978.10	ENSMUST00000022550.8	5977	7	-72	23489	-72	2201	5prime_fragment	FALSE	canonical	3	124	junction_2	10.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTACCCCACACTTAATG	NA	False	NA	NA	False	AATAAA	-28	NA	65335627	65312997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_65315639_65317828_65317925_65335445
transcript_41329.known	chr14	-	582	3	FSM	ENSMUSG00000021978.10	ENSMUST00000223989.2	582	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	58.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGGCACAGCGAACTCAT	NA	False	NA	NA	False	NA	NA	NA	65387304	65315198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65315639_65317828_65317925_65387258
transcript_41332.known	chr14	-	12734	7	FSM	ENSMUSG00000007989.8	ENSMUST00000131309.3	12734	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	9.80504405338848	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTGTCATTAGCAT	NA	False	NA	-12	True	AATAAA	-16	NA	65499912	65429897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65440382_65447140_65447375_65449523_65449673_65472362_65473381_65477166_65477364_65490392_65490913_65499780
transcript_41336.known	chr14	+	3781	8	FSM	ENSMUSG00000034532.10	ENSMUST00000224629.2	3781	8	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_5	3.88087934491604	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTCTATTGTAGGTAT	2538	False	NA	NA	False	AATAAA	-13	NA	65504066	65561420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_65504233_65508148_65508285_65524580_65524617_65531232_65531440_65532841_65533007_65536634_65536865_65540548_65540652_65558682
transcript_4134.nnic	chr1	-	4055	21	NNC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	-10	-97	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_12	45.6550928155885	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTGTCTCCTGGTCCTC	NA	False	NA	-1	True	TATAAA	-22	NA	128030210	127882017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924641_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
transcript_41341.known	chr14	+	4229	10	FSM	ENSMUSG00000034522.11	ENSMUST00000066994.7	4229	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	17.4171761399877	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGTGTGTGCCTCTCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	65596124	65636379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_65596205_65622844_65623110_65623775_65624009_65626238_65626349_65628735_65628966_65629503_65629605_65630368_65630670_65632204_65632298_65633303_65633408_65633667
transcript_41351.known	chr14	-	2851	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3444	False	NA	NA	False	AATAAA	-16	NA	65830524	65767897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
transcript_41352.known	chr14	-	2771	15	FSM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_14	90.9467493893531	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3467	False	NA	NA	False	AATAAA	-16	NA	65830501	65767897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
transcript_41354.known	chr14	-	2914	15	FSM	ENSMUSG00000022031.7	ENSMUST00000224743.2	2914	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	145.615933194139	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGAGTCGTCGTGTGG	3469	False	NA	NA	False	AATAAA	-10	NA	65830499	65767903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_65769050_65784431_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
transcript_41355.nnic	chr14	+	1178	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	19889	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.89121179284	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	6105	False	NA	NA	False	AATAAA	-35	NA	65862604	65885893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_65862710_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_41356.nnic	chr14	+	1145	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	20019	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	14.4094640101991	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	6235	False	NA	NA	False	AATAAA	-35	NA	65862734	65885893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_65862807_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_41364.known	chr14	+	3794	9	FSM	ENSMUSG00000022032.15	ENSMUST00000022610.15	3794	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	7.61474720525902	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGCTGATAAGTGGTCCA	818	False	NA	NA	False	AATAAA	-19	NA	65903851	66002275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_65904196_65908005_65908124_65927216_65927346_65967969_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
transcript_41365.nnic	chr14	+	3586	8	NIC	ENSMUSG00000022032.15	novel	3179	8	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	14.8172541453592	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGCTGATAAGTGGTCCA	NA	False	NA	NA	False	AATAAA	-19	NA	65913953	66002275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_65914208_65927216_65927346_65967969_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
transcript_41367.known	chr14	+	1720	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	0	0	0	0	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043285	66055271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
transcript_41370.nic	chr14	+	1526	8	NIC	ENSMUSG00000022033.10	novel	451	5	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	250.309767272148	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043647	66055271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_66043752_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
transcript_41378.known	chr14	-	2913	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCAGTGGCTTG	6344	False	NA	-11	True	ATTAAA	-14	NA	66071443	66056486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
transcript_41388.known	chr14	-	326	3	FSM	ENSMUSG00000022034.11	ENSMUST00000225853.2	326	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	560.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAATAAAAAAAAACAGAAGA	6430	False	NA	NA	False	NA	NA	NA	66071357	66068874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_66069016_66070112_66070191_66071250
transcript_41390.known	chr14	+	2230	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATTGATATCTGAATTC	NA	False	NA	31	True	AATAAA	-20	NA	66074750	66104056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
transcript_41398.known	chr14	+	1810	9	FSM	ENSMUSG00000022037.16	ENSMUST00000022616.14	1810	9	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	2.72717802865893	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGGGTCTGTTTTTTA	NA	False	NA	13	True	AATAAA	-20	NA	66205931	66218996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_66206138_66209180_66209302_66210773_66210923_66212291_66212463_66213029_66213442_66214354_66214460_66217099_66217330_66218302_66218479_66218756
transcript_4140.nnic	chr1	-	3964	21	NNC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	-20	-97	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_20	44.9244922063678	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTGTCTCCTGGTCCTC	NA	False	NA	-1	True	TATAAA	-22	NA	128030804	127882017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128030743
transcript_41400.known	chr14	-	2263	12	FSM	ENSMUSG00000034450.9	ENSMUST00000059970.9	2263	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.97086212624353	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTGCCCTTGAGGAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	66246656	66224234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_66225144_66225630_66225722_66227827_66227993_66228478_66228629_66234272_66234350_66235008_66235117_66237282_66237469_66240039_66240131_66241530_66241626_66243285_66243412_66245487_66245590_66246493
transcript_41402.known	chr14	-	2035	19	FSM	ENSMUSG00000022040.9	ENSMUST00000070515.2	2035	19	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_15	18.7001188350354	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTTTCTTGTGTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	66361949	66321825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
transcript_41411.known	chr14	-	4034	31	FSM	ENSMUSG00000059456.14	ENSMUST00000022622.14	4034	31	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_25	4.30103346753881	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGACTGTGTCGGTTATT	NA	False	NA	1	True	ATTAAA	-26	NA	66518501	66390705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691_66406897_66407686_66407777_66407932_66408034_66409131_66409248_66409507_66409609_66409924_66410010_66410754_66410853_66411286_66411338_66412197_66412245_66412621_66412662_66413072_66413191_66414511_66414614_66415140_66415216_66415484_66415626_66416040_66416096_66416279_66416343_66424891_66424972_66427022_66427111_66427504_66427684_66450760_66451002_66518331
transcript_41413.known	chr14	+	3678	6	FSM	ENSMUSG00000022043.20	ENSMUST00000022623.13	3678	6	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_4	10.4957134107215	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGTTTTTTATTGTC	NA	False	NA	31	True	NA	NA	NA	66534479	66548873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_66534999_66540629_66540726_66541453_66541685_66544474_66544498_66545260_66545380_66546183
transcript_41414.known	chr14	-	764	3	FSM	ENSMUSG00000085984.8	ENSMUST00000153646.8	764	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGGCAAGGCCTTAC	NA	False	NA	NA	False	TTTAAA	-40	NA	66534578	66532782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_66533036_66533403_66533594_66534257
transcript_41415.known	chr14	+	1057	1	FSM	ENSMUSG00000022043.20	ENSMUST00000223737.2	1057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	133	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-16	NA	66534514	66535571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_66534500_66535600
transcript_41416.nnic	chr14	+	2228	4	NNC	ENSMUSG00000046204.15	novel	5518	3	NA	NA	-27	-1286	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	11.7756811551038	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAGACTAAGTTCCAATA	NA	False	NA	NA	False	NA	NA	NA	67148591	67154978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_67148743_67151755_67151933_67152770_67152900_67153207
transcript_41418.known	chr14	+	5518	3	FSM	ENSMUSG00000046204.15	ENSMUST00000089236.11	5518	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCTGCCCAAGACAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	67148618	67158472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_67148743_67152770_67152900_67153207
transcript_41422.known	chr14	-	3238	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTCCATATATCATTTT	NA	False	NA	-12	True	ATTAAA	-16	NA	67246326	67222687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
transcript_41431.known	chr14	-	3841	15	FSM	ENSMUSG00000048922.19	ENSMUST00000163100.8	3841	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	110.056131318597	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTTCCAGATTGTTCAAA	NA	False	NA	-34	True	ATTAAA	-16	NA	67953059	67913803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_41432.nic	chr14	-	3606	15	NIC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	124.651514230674	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTTCCAGATTGTTCAAA	NA	False	NA	-34	True	ATTAAA	-16	NA	67953089	67913803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
transcript_41440.nic	chr14	-	3341	15	NIC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	-67	-373	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	124.651514230674	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGACTTTAAGTAGAAAT	NA	False	NA	-25	True	AATAAA	-15	NA	67953197	67914176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
transcript_41441.known	chr14	-	3568	15	FSM	ENSMUSG00000048922.19	ENSMUST00000150006.9	3568	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	140.480734389787	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGGTAATCTGAGTTTC	NA	False	NA	-10	True	ATTAAA	-40	NA	67953290	67913779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67953200
transcript_41447.known	chr14	-	2034	14	FSM	ENSMUSG00000048922.19	ENSMUST00000132705.8	2034	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	101.200837286337	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAAAAAGATGTTGAAAA	NA	False	NA	NA	False	AATACA	-42	NA	67953059	67917749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_41448.nic	chr14	-	1907	14	NIC	ENSMUSG00000048922.19	novel	2034	14	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	116.268155673291	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAAAAAGATGTTGAAAA	NA	False	NA	NA	False	AATACA	-42	NA	67953197	67917749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
transcript_41452.nic	chr14	-	2036	13	ISM	ENSMUSG00000048922.19	ENSMUST00000132705.8	2034	14	-32	13325	-32	507	5prime_fragment	FALSE	canonical	3	294	junction_1	37.2449661028172	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAATGCTTTTCACATT	NA	False	NA	NA	False	AAAAAG	-34	NA	67953091	67931074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_41453.nic	chr14	-	1877	13	NIC	ENSMUSG00000048922.19	novel	2034	14	NA	NA	-67	507	combination_of_known_junctions	FALSE	canonical	3	113	junction_12	75.845237160945	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAATGCTTTTCACATT	NA	False	NA	NA	False	AAAAAG	-34	NA	67953197	67931074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
transcript_41457.known	chr14	-	2419	8	FSM	ENSMUSG00000048922.19	ENSMUST00000155312.2	2419	8	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_7	40.1842694372323	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAGAAATGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	67952824	67936384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_41462.known	chr14	+	1302	12	FSM	ENSMUSG00000034327.18	ENSMUST00000150768.8	1302	12	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_9	22.4881970879051	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCCATCCATCGAGTTG	NA	False	NA	NA	False	NA	NA	NA	67953710	67977918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
transcript_41466.known	chr14	+	3157	11	FSM	ENSMUSG00000034327.18	ENSMUST00000078053.13	3157	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	27.0325729445053	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGGTTTCCTGACTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	67953546	67979759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67975054_67975161_67975825_67975960_67977744
transcript_41468.known	chr14	-	9988	52	FSM	ENSMUSG00000044447.6	ENSMUST00000039135.6	9988	52	0	0	0	0	multi-exon	TRUE	canonical	3	67	junction_21	9.78869405661972	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTTTAGCTGGTT	NA	False	NA	-12	True	ATTAAA	-24	NA	68170881	67989583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68170740
transcript_41470.nic	chr14	-	4659	43	ISM	ENSMUSG00000044447.6	ENSMUST00000039135.6	9988	52	-151	18903	-141	-15419	5prime_fragment	FALSE	canonical	3	67	junction_12	8.90746712155268	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAGAAAAAGACCCAGAAAA	NA	False	NA	NA	False	NA	NA	NA	68171032	68008486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68170740
transcript_41476.known	chr14	+	3380	4	FSM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	13.589211407093	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTGCAGTCTTTTTTT	NA	False	NA	12	True	AATAAA	-26	NA	68321311	68326544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_68322459_68323422_68323548_68323935_68324256_68324756
transcript_41480.nic	chr14	+	1557	3	ISM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	-5	2329	-5	-2329	5prime_fragment	FALSE	canonical	3	184	junction_1	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAGGGAGAGGAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	68321306	68324215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_68322459_68323422_68323548_68323935
transcript_41481.known	chr14	-	3334	3	FSM	ENSMUSG00000022054.12	ENSMUST00000022638.6	3334	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGGTGAGAGAAGTCTT	NA	False	NA	NA	False	AATAAA	-30	NA	68362295	68356731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_68358834_68360269_68360395_68361188
transcript_41484.known	chr14	-	2212	4	FSM	ENSMUSG00000034248.8	ENSMUST00000184914.2	2212	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	77.0512095225564	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTGAATTTCTCTTTT	687	False	NA	-8	True	NA	NA	NA	69522416	69481624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_69482804_69485029_69485087_69486331_69487072_69522180
transcript_41485.known	chr14	-	4174	4	FSM	ENSMUSG00000034248.8	ENSMUST00000037064.5	4174	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	79.79974937304	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTGGGGTCTTTGTGG	542	False	NA	-4	True	AATAAA	-16	NA	69522561	69479296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_69482804_69485029_69485087_69486842_69487072_69522180
transcript_41491.known	chr14	-	5927	3	FSM	ENSMUSG00000034248.8	ENSMUST00000184497.2	5927	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	78	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATTGTGGGGTCTTTG	542	False	NA	-7	True	AATAAA	-13	NA	69522561	69479299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_69482804_69485029_69487072_69522180
transcript_41498.nnic	chr14	+	3027	13	NNC	ENSMUSG00000095463.9	novel	3589	13	NA	NA	-46	470	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	28.7096334974091	117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACTTGACATTTTAAACA	7255	False	NA	NA	False	AATAAA	-16	NA	69574576	69604135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_69574738_69584934_69585044_69586521_69586720_69588151_69588358_69591850_69592002_69592842_69592947_69594161_69594222_69594443_69594575_69596270_69596438_69599087_69599413_69601016_69601103_69601771_69601934_69602968
transcript_415.known	chr1	+	1268	7	FSM	ENSMUSG00000056763.17	ENSMUST00000119714.8	1268	7	0	0	0	0	multi-exon	FALSE	canonical	2	91	junction_2	18.4157239577729	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACCCA	NA	False	NA	NA	False	NA	NA	NA	10110009	10137327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650
transcript_41500.known	chr14	+	3589	13	FSM	ENSMUSG00000095463.9	ENSMUST00000184973.8	3589	13	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_8	36.1504379872038	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGACGTCTTTCCCTTG	7301	False	NA	NA	False	NA	NA	NA	69574622	69604719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_69574738_69584934_69585044_69586521_69586720_69588151_69588358_69591850_69592002_69592842_69592947_69594161_69594222_69594443_69594599_69596270_69596438_69599087_69599413_69601016_69601103_69601771_69601934_69602968
transcript_41510.nnic	chr14	+	3024	13	NNC	ENSMUSG00000022066.17	novel	3589	13	NA	NA	-43	470	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	28.7614711414806	102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACTTGACATTTTAAACA	NA	False	NA	NA	False	AATAAA	-16	NA	69792829	69822385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812825_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
transcript_41511.known	chr14	+	3589	13	FSM	ENSMUSG00000022066.17	ENSMUST00000185072.8	3589	13	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_8	35.9663229826026	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGACGTCTTTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	69792872	69822969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812849_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
transcript_41520.known	chr14	+	989	4	FSM	ENSMUSG00000022066.17	ENSMUST00000064846.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	92.2689306080631	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGGAAGTGCCTGAGAG	NA	False	NA	NA	False	TTTAAA	-6	NA	69792896	69806032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_69792988_69803184_69803294_69804771_69804970_69805441
transcript_41522.known	chr14	+	5316	14	FSM	ENSMUSG00000034205.17	ENSMUST00000022660.14	5316	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.66410058867569	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTCGTCTCGGATTT	6037	False	NA	NA	False	AATAAA	-20	NA	69846516	69933283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_69846744_69871332_69871740_69882144_69882321_69898087_69898300_69901348_69901572_69904715_69904900_69910830_69910983_69913124_69913293_69915261_69915425_69919543_69919788_69926476_69926593_69927582_69927720_69929762_69929875_69930488
transcript_41525.known	chr14	-	1726	8	FSM	ENSMUSG00000034194.19	ENSMUST00000118374.8	1726	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_7	41.9007573844168	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGATTGCGTCCAAGTG	NA	False	NA	-6	True	AATAAA	-15	NA	69945033	69934755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502_69944631_69944954
transcript_41530.known	chr14	-	1958	7	FSM	ENSMUSG00000034194.19	ENSMUST00000121142.4	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_3	17.7333646616265	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGATTGCGTCCAAGT	NA	False	NA	-7	True	AATAAA	-14	NA	69944942	69934756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502
transcript_41532.known	chr14	-	2649	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTTGTTGTCTATTC	NA	False	NA	-2	True	ATTAAA	-15	NA	69969983	69954448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
transcript_41546.known	chr14	-	3115	8	FSM	ENSMUSG00000034190.10	ENSMUST00000225036.2	3115	8	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	16.4788051875178	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTTGTTGTCTATTC	NA	False	NA	-2	True	ATTAAA	-15	NA	69969990	69954448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_69955750_69955963_69956147_69956577_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
transcript_4155.nic	chr1	-	1812	13	ISM	ENSMUSG00000036086.17	ENSMUST00000086614.12	4210	21	-11	22313	-10	10613	5prime_fragment	FALSE	canonical	3	134	junction_10	28.9549458450346	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAAAAAGAGACAGTTAGA	NA	False	NA	NA	False	AAAAAG	-39	NA	128030210	127904233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
transcript_41555.nnic	chr14	+	2905	9	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	-4	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	23.1179043167844	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCAGTGTACGTGGCCC	NA	False	NA	2	True	NA	NA	NA	70004916	70021858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015169_70015265_70017952_70018023_70019680_70020999_70021274
transcript_41557.known	chr14	+	3179	8	FSM	ENSMUSG00000022074.7	ENSMUST00000022663.7	3179	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	19.7556501863572	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGTGTACGTGGCCCTC	NA	False	NA	4	True	NA	NA	NA	70004920	70021860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015169_70015265_70017952_70018023_70019680
transcript_41564.known	chr14	+	2787	6	FSM	ENSMUSG00000022074.7	ENSMUST00000224533.2	2787	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	22.5831795812724	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTAAAAAAAAAACAACTT	NA	False	NA	NA	False	NA	NA	NA	70004933	70017135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015169
transcript_41567.known	chr14	-	5322	10	FSM	ENSMUSG00000022075.8	ENSMUST00000022665.4	5322	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_6	15.5737988261228	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTCTTGTACTGTTT	NA	False	NA	-4	True	AATACA	-19	NA	70043085	70022438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70025185_70025306_70025413_70026080_70026170_70031352_70031504_70033348_70033468_70033722_70034742_70035587_70035774_70037126_70037231_70038066_70038269_70042485
transcript_4157.nic	chr1	-	2060	13	NIC	ENSMUSG00000036086.17	novel	1913	13	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.1305933426774	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATATGTGTGATTGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	128030216	127914846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
transcript_41580.known	chr14	-	3725	21	FSM	ENSMUSG00000033712.7	ENSMUST00000035612.7	3725	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	38.4373191052654	526	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	False	NA	44	True	AATAAA	-18	NA	70391260	70375616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
transcript_41615.known	chr14	+	1767	9	FSM	ENSMUSG00000022089.10	ENSMUST00000022680.9	1767	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_3	8.98523093748847	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	70337553	70375655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_70337646_70356052_70356102_70361289_70361331_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184_70372320_70374587
transcript_41622.known	chr14	-	1983	7	FSM	ENSMUSG00000044551.14	ENSMUST00000153871.2	1983	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.91070819942883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGACTGTTAAATGACC	NA	False	NA	NA	False	NA	NA	NA	70396951	70391853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70392726_70393298_70393403_70393609_70393726_70393864_70393968_70394107_70394249_70394627_70395104_70396780
transcript_41623.known	chr14	-	1986	7	FSM	ENSMUSG00000044551.14	ENSMUST00000058240.14	1986	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.76887462097269	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGACTGTTAAATGACC	NA	False	NA	NA	False	NA	NA	NA	70396951	70391853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70392726_70393298_70393406_70393609_70393726_70393864_70393968_70394107_70394249_70394627_70395104_70396780
transcript_41626.known	chr14	-	1970	14	FSM	ENSMUSG00000022092.12	ENSMUST00000078434.8	1970	14	0	0	0	0	multi-exon	TRUE	canonical	2	11	junction_1	4.03827838412513	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATATATATAAAATACTT	9186	False	NA	NA	False	TATAAA	-25	NA	70526920	70455346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70455727_70457465_70457496_70461758_70461857_70462415_70462498_70472588_70472658_70473926_70474053_70478177_70478273_70478352_70478431_70483301_70483442_70485022_70485169_70493808_70493921_70504078_70504204_70504757_70504956_70526629
transcript_41629.nic	chr14	-	2385	10	ISM	ENSMUSG00000022091.7	ENSMUST00000227259.2	2481	21	11918	-464	11918	0	intron_retention	FALSE	canonical	3	14	junction_5	4.24554959434284	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCTGCTTCATTA	NA	False	NA	NA	False	AATAAA	-16	NA	70430154	70417916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_70418681_70421114_70421222_70421455_70421557_70422276_70422586_70424307_70424434_70428176_70428292_70428464_70428512_70428596_70428650_70428881_70429025_70429534
transcript_4163.known	chr1	-	515	3	FSM	ENSMUSG00000036086.17	ENSMUST00000124876.2	515	3	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAATATCCATTTCCTCT	NA	False	NA	NA	False	AAAACA	-13	NA	128030191	127985592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_127985738_128019579_128019748_128029989
transcript_41630.known	chr14	-	2098	10	FSM	ENSMUSG00000022094.16	ENSMUST00000022688.10	2098	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	4.44999653211129	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATGGTTTGGTTAGAAGT	NA	False	NA	NA	False	AATGAA	-8	NA	70588874	70543745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70544262_70546098_70546284_70547206_70547415_70547531_70547721_70548304_70548425_70553112_70553283_70553886_70554074_70556110_70556390_70568717_70568816_70588728
transcript_41631.known	chr14	-	4926	10	FSM	ENSMUSG00000022094.16	ENSMUST00000068044.14	4926	10	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_9	2.18298696715428	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGTGAGTCCCAAGTGT	NA	False	NA	0	True	AATAAA	-13	NA	70588874	70540917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70544262_70546098_70546284_70547206_70547415_70547531_70547721_70548304_70548425_70551049_70551220_70553886_70554074_70556110_70556390_70568717_70568816_70588728
transcript_41632.known	chr14	-	4916	23	FSM	ENSMUSG00000033644.6	ENSMUST00000048129.6	4916	23	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_22	14.3650747266008	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGTCTGAGAGAATATT	NA	False	NA	-14	True	AATAAA	-18	NA	70666543	70609925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70611886_70613387_70613496_70614111_70614366_70627340_70627447_70627976_70628066_70628812_70628930_70629927_70630030_70631459_70631649_70632776_70632891_70635592_70635734_70637183_70637274_70638866_70638952_70639482_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666391
transcript_41636.nic	chr14	-	4887	23	NIC	ENSMUSG00000033644.6	novel	4916	23	NA	NA	-61	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_14	9.98511288563344	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGTCTGAGAGAATATT	NA	False	NA	-14	True	AATAAA	-18	NA	70666893	70609925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_70611886_70613387_70613496_70614111_70614366_70627340_70627447_70627976_70628066_70628812_70628930_70629927_70630030_70631459_70631649_70632776_70632891_70635592_70635734_70637183_70637274_70638866_70638952_70639482_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666770
transcript_41637.nic	chr14	-	3580	23	NIC	ENSMUSG00000033644.6	novel	4916	23	NA	NA	-61	-1307	combination_of_known_junctions	FALSE	canonical	3	45	junction_14	9.98511288563344	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGTCAAGCAAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	70666893	70611232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_70611886_70613387_70613496_70614111_70614366_70627340_70627447_70627976_70628066_70628812_70628930_70629927_70630030_70631459_70631649_70632776_70632891_70635592_70635734_70637183_70637274_70638866_70638952_70639482_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666770
transcript_41644.known	chr14	-	2016	9	FSM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	16.2244992218558	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTAAGTGGTTCTGCT	1731	False	NA	-7	True	AATAAA	-17	NA	70680887	70676196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
transcript_41646.known	chr14	-	2032	8	FSM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	15.9910689359494	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAGTCTATTTCCAAAT	1888	False	NA	-10	True	AATAAA	-17	NA	70680730	70676235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390
transcript_41655.nic	chr14	-	596	5	ISM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	-26	2316	-26	0	5prime_fragment	FALSE	canonical	3	150	junction_4	8.90224690738243	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGCAGATCCTGCGCAT	1705	False	NA	NA	False	AAAAAG	-24	NA	70680913	70678512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
transcript_41656.nic	chr14	-	375	4	ISM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	-26	2679	-26	-363	5prime_fragment	FALSE	canonical	3	150	junction_3	10.1434160364686	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAAGGAAAAGCGTGAA	1705	False	NA	NA	False	NA	NA	NA	70680913	70678875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_70678896_70679791_70679836_70680390_70680561_70680772
transcript_41659.nic	chr14	-	356	3	ISM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	-26	3594	-26	506	5prime_fragment	FALSE	canonical	3	150	junction_2	10.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGTAATGAATGAACAGTA	1705	False	NA	NA	False	NA	NA	NA	70680913	70679790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_70679836_70680390_70680561_70680772
transcript_4166.known	chr1	+	414	1	FSM	ENSMUSG00000058603.11	ENSMUST00000121497.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1449	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACGCCCGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	127966305	127966719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_127966300_127966700
transcript_41660.known	chr14	-	352	2	FSM	ENSMUSG00000000776.14	ENSMUST00000226549.2	352	2	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAGCCTTTAGAGAGACC	1758	False	NA	NA	False	NA	NA	NA	70680860	70680296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70680561_70680772
transcript_41662.known	chr14	+	2838	5	FSM	ENSMUSG00000003469.10	ENSMUST00000003561.10	2838	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.17944947177034	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGGTCCATTTAGGCG	NA	False	NA	13	True	AATAAA	-25	NA	70694915	70706272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_70695244_70699178_70699364_70700679_70700855_70702889_70703008_70704240
transcript_41663.known	chr14	-	3684	20	FSM	ENSMUSG00000022098.11	ENSMUST00000022693.9	3684	20	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.84885979686845	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTGTGCCAGATGCTGT	8993	False	NA	NA	False	AATAAA	-20	NA	70757628	70711997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70712690_70715292_70715544_70716984_70717199_70717593_70717722_70723586_70723713_70727459_70727641_70727986_70728148_70728790_70728917_70729515_70729712_70729844_70729991_70730218_70730336_70732152_70732256_70742121_70742238_70742771_70742897_70744892_70744999_70745438_70745618_70745895_70746014_70746189_70746355_70749020_70749135_70757308
transcript_41664.known	chr14	+	1565	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_3	37.0515360886781	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCTCTTCACATCTC	6567	False	NA	30	True	AATAAA	-26	NA	70782793	70786373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
transcript_41666.known	chr14	+	1444	7	FSM	ENSMUSG00000033589.5	ENSMUST00000226563.2	1444	7	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_2	32.9313258497471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTGGTACCCTGCACAG	6464	False	NA	NA	False	NA	NA	NA	70782690	70786041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_70783179_70783916_70783990_70784369_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
transcript_41668.nic	chr14	+	2915	12	ISM	ENSMUSG00000022096.15	ENSMUST00000163060.2	5278	18	7555	-4	7555	0	3prime_fragment	FALSE	canonical	2	7	junction_11	3.66804381851491	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTTCCGAGCATTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	70800894	70810988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_70801123_70802741_70802824_70803468_70803633_70803749_70803987_70804219_70804386_70804588_70804659_70804941_70805073_70805215_70805336_70805416_70805533_70808817_70808983_70809347_70809477_70809681
transcript_41670.known	chr14	+	3926	3	FSM	ENSMUSG00000045211.6	ENSMUST00000089049.4	3926	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	3	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACACACCTGTAACTCCA	NA	False	NA	NA	False	AAAACA	-25	NA	70815076	70820011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_70815551_70816351_70816566_70816773
transcript_41677.known	chr14	-	5418	16	FSM	ENSMUSG00000022099.18	ENSMUST00000022694.17	5418	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	61.6256079528272	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGTTTCCTTTTCCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	70864748	70838702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70842295_70842407_70842489_70842736_70842803_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
transcript_41689.known	chr14	-	4080	15	FSM	ENSMUSG00000022099.18	ENSMUST00000022695.16	4080	15	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_3	86.8222733108109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATCCTTGAAACAGACCT	NA	False	NA	NA	False	AGTAAA	-20	NA	70873488	70839624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70842295_70842407_70842489_70842736_70842806_70842807_70842813_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855678_70855849_70873259
transcript_4169.nnic	chr1	+	4553	24	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_12	40.7907195049507	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCACTTTGTCTTTTTT	NA	False	NA	18	True	AATAAA	-14	NA	128031019	128165472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109902_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
transcript_41695.known	chr14	-	4176	15	FSM	ENSMUSG00000022099.18	ENSMUST00000110984.4	4176	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	58.3538205034335	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATCCTTGAAACAGACCT	NA	False	NA	NA	False	AGTAAA	-20	NA	70864494	70839624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70842295_70842407_70842489_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
transcript_4170.nic	chr1	+	4601	24	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_12	31.0798106715592	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCACTTTGTCTTTTTT	NA	False	NA	18	True	AATAAA	-14	NA	128031019	128165472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
transcript_41706.nic	chr14	-	2672	14	NIC	ENSMUSG00000022099.18	novel	2643	16	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	72.6126140279795	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	0	True	ATTAAA	-22	NA	70864550	70841109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_70842295_70842407_70842489_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855678_70855849_70864178
transcript_41707.known	chr14	-	2377	14	FSM	ENSMUSG00000022099.18	ENSMUST00000228824.2	2377	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	82.4216321349376	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTATTGTTTCTATCCA	NA	False	NA	-3	True	ATTAAA	-19	NA	70866439	70841112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70842295_70842407_70842489_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855678_70855849_70866359
transcript_41717.known	chr14	-	2572	15	FSM	ENSMUSG00000022099.18	ENSMUST00000228295.2	2572	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.6262794551225	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCAGTTGTCTTACCTC	NA	False	NA	47	True	NA	NA	NA	70873418	70841062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70842295_70842407_70842489_70842736_70842803_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855678_70855849_70873259
transcript_41720.nnic	chr14	-	1440	6	NNC	ENSMUSG00000022101.7	novel	1689	5	NA	NA	-102	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.6541286172528	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879810	70873642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_70874464_70875906_70876014_70876241_70876387_70878971_70879009_70879162_70879267_70879584
transcript_41724.nnic	chr14	-	1534	6	NNC	ENSMUSG00000022101.7	novel	1689	5	NA	NA	-163	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	18.6826122370508	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879871	70873642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162_70879267_70879584
transcript_41726.known	chr14	-	1336	5	FSM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	9.90896059130321	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCCGGCAGAAGAAATAGG	NA	False	NA	NA	False	NA	NA	NA	70879694	70873948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70874464_70875906_70876014_70876241_70876387_70878971_70879009_70879162
transcript_41727.known	chr14	-	1689	5	FSM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	15.3195136998535	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879708	70873642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162
transcript_41735.nic	chr14	-	1100	4	ISM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	-63	1742	-49	-1742	5prime_fragment	FALSE	canonical	3	35	junction_2	11.4309521329882	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGTATATGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	70879757	70875690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_70876014_70876241_70876387_70878971_70879009_70879162
transcript_41736.nic	chr14	-	1203	4	ISM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	-119	2048	-119	-1742	5prime_fragment	FALSE	canonical	3	21	junction_2	17.4610678049451	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGTATATGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	70879827	70875690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_70876014_70876241_70876420_70878971_70879009_70879162
transcript_41742.known	chr14	-	4472	28	FSM	ENSMUSG00000022100.15	ENSMUST00000022696.8	4472	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	88.8509332544799	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACATTGGATGGAGAAA	NA	False	NA	NA	False	AATAAA	-37	NA	71003994	70902257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70903535_70904461_70904590_70906099_70906199_70906756_70906918_70907990_70908130_70908491_70908707_70909088_70909172_70914146_70914255_70915518_70915608_70918678_70918786_70919772_70919882_70920232_70920297_70921095_70921177_70922299_70922374_70922861_70922998_70925067_70925174_70925566_70925761_70928421_70928595_70930090_70930238_70931356_70931477_70933053_70933128_70933990_70934157_70936381_70936487_70939159_70939226_70940662_70940830_70942103_70942198_70944726_70944874_71003951
transcript_41762.known	chr14	-	997	9	FSM	ENSMUSG00000047911.7	ENSMUST00000062629.5	997	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	2.75850956133924	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTCCCTCTGCCTCCCCC	NA	False	NA	NA	False	AATAAA	-15	NA	70890524	70884741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_70884990_70885076_70885111_70885484_70885526_70885699_70885852_70886910_70887005_70889562_70889677_70889768_70889855_70889971_70890136_70890460
transcript_41766.known	chr14	-	6143	26	FSM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_25	24.1979833870511	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTTTTGTATTTATAA	NA	False	NA	-1	True	AATAAA	-24	NA	72947443	72775385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921212_72947157
transcript_41769.known	chr14	-	4100	24	FSM	ENSMUSG00000033487.15	ENSMUST00000162825.8	4100	24	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_23	34.1903931941048	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACACACACACTTACACA	7145	False	NA	NA	False	AAAAAG	-33	NA	72840402	72776969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72840361
transcript_41780.nic	chr14	-	1303	6	ISM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	-224	46635	-224	-10015	5prime_fragment	FALSE	canonical	3	104	junction_5	24.3688325530789	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAGGTAACTCTGGACAT	NA	False	NA	NA	False	AAGAAA	-45	NA	72947667	72822020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921212_72947157
transcript_41782.nic	chr14	-	906	6	ISM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	-14	46822	-14	-10202	5prime_fragment	FALSE	canonical	3	104	junction_5	24.3688325530789	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGGATCGCCAAGGAAC	NA	False	NA	NA	False	AGTAAA	-25	NA	72947457	72822207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921212_72947157
transcript_41788.known	chr14	-	1262	4	FSM	ENSMUSG00000033487.15	ENSMUST00000162922.8	1262	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	15.5134350376268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72947437	72835814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_72836583_72889455_72889532_72921073_72921212_72947157
transcript_41789.known	chr14	-	4656	27	FSM	ENSMUSG00000022105.7	ENSMUST00000022701.7	4656	27	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	9.67129896490844	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTGATATGATCTCTG	NA	False	NA	-13	True	AATAAA	-20	NA	73563262	73432941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_73434725_73435971_73436022_73436621_73436765_73440264_73440296_73443183_73443348_73443449_73443564_73444654_73444760_73449043_73449190_73450423_73450570_73454103_73454220_73499968_73500166_73501732_73501810_73501889_73501922_73502012_73502070_73502955_73503073_73506550_73506639_73510072_73510151_73511076_73511187_73515853_73515932_73517561_73517705_73520307_73520419_73525042_73525111_73526148_73526188_73532350_73532471_73535493_73535610_73559456_73559584_73562962
transcript_41791.known	chr14	+	3622	16	FSM	ENSMUSG00000022106.15	ENSMUST00000169513.8	3622	16	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	12.7774106227444	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATTAATTTTATTGCCT	NA	False	NA	NA	False	TATAAA	-23	NA	73380538	73421658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73395827_73395886_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
transcript_41792.known	chr14	+	3531	15	FSM	ENSMUSG00000022106.15	ENSMUST00000164822.8	3531	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	11.0686632491213	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATTAATTTTATTGCCT	9687	False	NA	NA	False	TATAAA	-23	NA	73379976	73421658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_73380034_73388972_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
transcript_41795.known	chr14	+	2971	15	FSM	ENSMUSG00000022106.15	ENSMUST00000022702.13	2971	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11.5740737717309	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTGGAATCCTATGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	73380601	73421133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_73380629_73388972_73389056_73391759_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
transcript_4180.known	chr1	+	1130	9	FSM	ENSMUSG00000056211.14	ENSMUST00000188381.7	1130	9	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_3	23.1432360528946	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAGAAGAAGAATAC	NA	False	NA	NA	False	NA	NA	NA	128031057	128106866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823
transcript_41800.known	chr14	+	591	4	FSM	ENSMUSG00000022106.15	ENSMUST00000165646.8	591	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	3.29983164553722	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTTTCCCAAATATTAAA	NA	False	NA	NA	False	NA	NA	NA	73380549	73392605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270
transcript_41806.known	chr14	-	1796	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTGGATGCTGTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	73622729	73599665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
transcript_41814.known	chr14	+	1328	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTTTTCAATTTTT	NA	False	NA	15	True	AATAAA	-17	NA	73747464	73755985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
transcript_41816.known	chr14	+	2103	6	FSM	ENSMUSG00000022109.7	ENSMUST00000228141.2	2103	6	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_5	13.5735036007657	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTCACAATTAAGTCTCT	NA	False	NA	NA	False	AATAAA	-17	NA	73747477	73756289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754779_73755333
transcript_41818.known	chr14	+	1455	1	FSM	ENSMUSG00000022109.7	ENSMUST00000226256.2	1455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	73747471	73748926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_73747500_73748900
transcript_41821.known	chr14	+	2229	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	0	0	0	0	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGAGTTATGGGTTTT	NA	False	NA	11	True	AATAAA	-14	NA	73790104	73833582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
transcript_41829.nnic	chr14	+	1447	10	NIC	ENSMUSG00000022110.14	novel	2229	11	NA	NA	5	-136	combination_of_known_splicesites	FALSE	canonical	3	74	junction_1	503.772435397836	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGGTCTCTTTTCT	NA	False	NA	14	True	TATAAA	-17	NA	73790210	73833087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_73790338_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
transcript_41839.nnic	chr14	+	1177	8	NNC	ENSMUSG00000022110.14	novel	435	2	NA	NA	7000	-136	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	572.614982660554	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGGTCTCTTTTCT	NA	False	NA	14	True	TATAAA	-17	NA	73813093	73833087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_73813214_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
transcript_4184.nic	chr1	+	678	4	ISM	ENSMUSG00000056211.14	ENSMUST00000188381.7	1130	9	-38	11180	-18	-10194	5prime_fragment	FALSE	canonical	3	211	junction_3	33.9411254969543	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATGAAACAGATAAAGAAAA	NA	False	NA	NA	False	AAAAAG	-18	NA	128031019	128095686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629
transcript_41843.known	chr14	-	3579	5	FSM	ENSMUSG00000033405.5	ENSMUST00000043813.3	3579	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	9.75640815054393	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCTCAGAGACTTAATTG	NA	False	NA	NA	False	AATAAA	-21	NA	73785682	73756316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_73759115_73760737_73760935_73762499_73762757_73769507_73769626_73785473
transcript_41849.known	chr14	+	1545	12	FSM	ENSMUSG00000022110.14	ENSMUST00000022706.7	1545	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_11	475.849184386179	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCTTTATTCTTTAGT	NA	False	NA	NA	False	AATAAA	-13	NA	73790205	73833223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813_73832914_73833137
transcript_4185.known	chr1	+	4113	13	FSM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_2	38.8918550456119	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCATTTTGCTCTTTCC	94	False	NA	NA	False	NA	NA	NA	128171898	128207115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
transcript_41850.nic	chr14	+	1103	9	NIC	ENSMUSG00000021996.17	novel	1988	9	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	441.393514196799	1131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969708	74987288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983162_74987084
transcript_41851.nic	chr14	+	1141	9	NIC	ENSMUSG00000021996.17	novel	1117	9	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	570.76329101914	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969803	74987288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983162_74987084
transcript_41858.known	chr14	+	1988	9	FSM	ENSMUSG00000021996.17	ENSMUST00000022573.17	1988	9	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_1	102.16133074701	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACTACCCCAAATTCTT	NA	False	NA	NA	False	NA	NA	NA	74969736	74988205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
transcript_41859.known	chr14	+	1117	9	FSM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	425.971756692859	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969823	74987288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
transcript_41861.known	chr14	-	4694	20	FSM	ENSMUSG00000068015.9	ENSMUST00000088970.7	4694	20	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	23.7891243570067	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTTGGATTGATTGACT	579	False	NA	-1	True	ATTAAA	-20	NA	75185306	74992114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032350_75032432_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
transcript_41864.known	chr14	-	3125	19	FSM	ENSMUSG00000068015.9	ENSMUST00000228252.2	3125	19	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_17	17.7194355175815	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCAAGAGAGCACCCCA	569	False	NA	NA	False	AATAAA	-7	NA	75185316	74993612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
transcript_41869.nic	chr14	+	3656	16	ISM	ENSMUSG00000021998.17	ENSMUST00000145303.8	3841	17	40331	26	455	0	3prime_fragment	TRUE	canonical	2	7	junction_1	5.24679796532027	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGTCCCCCAATTC	NA	False	NA	NA	False	AATAAA	-23	NA	75414102	75468256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_75414374_75435516_75435604_75436719_75436884_75437819_75437950_75440075_75440209_75442004_75442087_75443558_75443725_75445859_75446003_75447878_75447975_75449770_75449967_75451924_75452004_75452548_75452664_75453767_75453902_75461510_75461635_75464406_75464532_75466645
transcript_41872.nic	chr14	+	3575	15	ISM	ENSMUSG00000021998.17	ENSMUST00000131802.2	3594	16	7558	0	-13	0	3prime_fragment	FALSE	canonical	2	7	junction_11	4.86396579606663	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGTCCCCCAATTC	NA	False	NA	NA	False	AATAAA	-23	NA	75435326	75468256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_75435604_75436719_75436884_75437819_75437950_75440075_75440209_75442004_75442087_75443558_75443725_75445859_75446003_75447878_75447975_75449770_75449967_75451924_75452004_75452548_75452664_75453767_75453902_75461510_75461635_75464406_75464532_75466645
transcript_41880.nic	chr14	+	2631	12	ISM	ENSMUSG00000022000.12	ENSMUST00000022577.6	6151	19	-53	16699	-53	5886	5prime_fragment	FALSE	canonical	3	23	junction_1	28.9073755923357	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAGAGAAAGAGAACTAG	NA	False	NA	-41	True	NA	NA	NA	75521759	75565167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_75522106_75529011_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983
transcript_41884.nic	chr14	+	2501	12	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-54	16820	-41	5765	5prime_fragment	FALSE	canonical	3	74	junction_1	17.8339447901147	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGAGGAACGAAGAATA	NA	False	NA	NA	False	NA	NA	NA	75521771	75565046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983
transcript_41885.nic	chr14	+	2622	12	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-54	16699	-41	5886	5prime_fragment	FALSE	canonical	3	74	junction_1	17.8339447901147	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAGAGAAAGAGAACTAG	NA	False	NA	-41	True	NA	NA	NA	75521771	75565167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983
transcript_41886.nic	chr14	+	2750	12	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-54	16571	-41	6014	5prime_fragment	FALSE	canonical	3	74	junction_1	17.8339447901147	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAGGGAGCGAGAGAGG	NA	False	NA	87	True	NA	NA	NA	75521771	75565295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983
transcript_41896.nic	chr14	+	1222	8	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-54	28413	-41	-5828	5prime_fragment	FALSE	canonical	3	74	junction_1	13.3569518702923	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGAGATGGGAAGGACAG	NA	False	NA	NA	False	NA	NA	NA	75521771	75553453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320
transcript_419.known	chr1	-	2204	5	FSM	ENSMUSG00000025917.10	ENSMUST00000139578.8	2204	5	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_4	120.517633564554	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10108163	10101144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
transcript_41900.nic	chr14	+	860	6	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-54	35449	-41	-12864	5prime_fragment	FALSE	canonical	3	74	junction_1	11.1713920350152	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAGAGAGAATTGATGAAA	NA	False	NA	NA	False	AATGAA	-12	NA	75521771	75546417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348
transcript_41901.nic	chr14	+	714	5	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-54	38606	-41	-16021	5prime_fragment	FALSE	canonical	3	74	junction_1	10.8714074525794	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGACATAAAAATTGTTA	NA	False	NA	NA	False	NA	NA	NA	75521771	75543260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228
transcript_41905.known	chr14	+	6151	19	FSM	ENSMUSG00000022000.12	ENSMUST00000022577.6	6151	19	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	33.0591034510565	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521812	75581866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_75522106_75529011_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573364_75573515_75574809_75575011_75576748_75576913_75581033
transcript_41909.nnic	chr14	-	4262	23	NNC	ENSMUSG00000034893.10	novel	4268	23	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_20	22.2812599611096	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGATCTTTGCTTCCTAC	NA	False	NA	NA	False	AATAAA	-18	NA	75992023	75939809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_75941501_75944529_75944629_75945361_75945490_75950640_75950717_75954307_75954443_75954548_75954638_75957131_75957253_75959541_75959632_75962150_75962276_75965147_75965254_75966710_75966872_75968034_75968175_75969415_75969508_75970350_75970478_75971337_75971382_75975402_75975484_75976943_75977070_75977975_75978069_75979120_75979196_75979780_75979916_75981005_75981068_75984492_75984640_75991704
transcript_41910.known	chr14	-	4268	23	FSM	ENSMUSG00000034893.10	ENSMUST00000049168.9	4268	23	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_8	10.1293289898751	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGATCTTTGCTTCCTAC	NA	False	NA	NA	False	AATAAA	-18	NA	75991998	75939809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_75941501_75944529_75944629_75945361_75945490_75950640_75950717_75954307_75954443_75954548_75954638_75957131_75957253_75959541_75959632_75962150_75962276_75965147_75965254_75966710_75966872_75968034_75968175_75969415_75969508_75970350_75970478_75971337_75971382_75975402_75975484_75976943_75977070_75977975_75978069_75979120_75979196_75979780_75979947_75981005_75981068_75984492_75984640_75991704
transcript_41919.known	chr14	-	3588	10	FSM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	8.56348838577675	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGGCTTACAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	76024477	75997556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76014435_76014567_76024364
transcript_4192.nic	chr1	+	1008	8	ISM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	-31	16572	-31	3271	5prime_fragment	FALSE	canonical	3	326	junction_2	18.4766813876854	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAATTGAAAGGAGAAAAA	63	False	NA	11	True	CATAAA	-41	NA	128171867	128190543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529
transcript_41929.known	chr14	+	1169	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	0	0	0	0	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	2448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGAGTGTGTGAACTCA	838	False	NA	NA	False	NA	NA	NA	76082532	76085855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
transcript_4193.nic	chr1	+	1082	8	ISM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	-31	16498	-31	3345	5prime_fragment	FALSE	canonical	3	326	junction_2	18.4766813876854	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATGTTAGAAGAAAGAAGC	63	False	NA	85	True	NA	NA	NA	128171867	128190617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529
transcript_41935.known	chr14	-	1467	8	FSM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_6	43.0538343595692	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGATGGCAACTGTTATC	NA	False	NA	-17	True	AATAAA	-19	NA	76248305	76134376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
transcript_4194.nic	chr1	+	994	7	ISM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	-31	18490	-31	1353	5prime_fragment	FALSE	canonical	3	326	junction_2	18.4179863780551	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGACTCACTTAGCAGTG	63	False	NA	48	True	AAGAAA	-33	NA	128171867	128188625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570
transcript_41942.nic	chr14	-	844	7	ISM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	-93	9845	-93	-9845	5prime_fragment	FALSE	canonical	3	468	junction_5	39.2063628622815	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTACACATTCTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	76248398	76144221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
transcript_41944.nic	chr14	-	699	6	ISM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	-93	20697	-93	-20697	5prime_fragment	FALSE	canonical	3	468	junction_4	34.8746326145524	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTCTTCTGCTTGTCTT	NA	False	NA	0	True	NA	NA	NA	76248398	76155073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
transcript_41946.known	chr14	-	5389	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTTGGAATCTTCCTTT	NA	False	NA	-9	True	AATAAA	-17	NA	76348200	76323675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
transcript_4195.nic	chr1	+	828	6	ISM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	78	19843	78	0	5prime_fragment	FALSE	canonical	3	326	junction_2	20.1434852992227	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGCTCTTACTTTTGT	172	False	NA	21	True	NA	NA	NA	128171976	128187272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180
transcript_41958.known	chr14	+	3974	10	FSM	ENSMUSG00000022009.2	ENSMUST00000022586.2	3974	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_7	36.4295362461713	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTGCTGTCCGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	76348330	76374819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925_76362019_76363577_76363772_76368252_76368370_76370411_76370639_76372225
transcript_41962.nic	chr14	+	810	6	ISM	ENSMUSG00000022009.2	ENSMUST00000022586.2	3974	10	-22	12855	-22	-12855	5prime_fragment	FALSE	canonical	3	445	junction_1	31.8220049651181	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTACAACTGGAAAAGGCAA	NA	False	NA	NA	False	AAGAAA	-3	NA	76348308	76361964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925
transcript_41963.nic	chr14	+	771	5	ISM	ENSMUSG00000022009.2	ENSMUST00000022586.2	3974	10	-22	21519	-22	-21519	5prime_fragment	FALSE	canonical	3	445	junction_1	34.0587727318528	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAGTAAAGAATTATGAAC	NA	False	NA	NA	False	NA	NA	NA	76348308	76353300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223
transcript_41965.known	chr14	+	797	3	FSM	ENSMUSG00000022010.20	ENSMUST00000142683.8	797	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	1130	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTGCTTCTGAGAGCTC	3103	False	NA	106	True	NA	NA	NA	76725198	76744438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_76725365_76742688_76742738_76743856
transcript_41966.known	chr14	+	1043	3	FSM	ENSMUSG00000022010.20	ENSMUST00000101618.9	1043	3	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_1	1143	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAAAACCGACAACTGTC	3780	False	NA	NA	False	NA	NA	NA	76725875	76744610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_76726116_76742688_76742738_76743856
transcript_41967.known	chr14	+	1762	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	2022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGTTTCTATATGACGC	6539	False	NA	31	True	AATAAA	-21	NA	76741917	76745205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
transcript_41968.known	chr14	+	1476	3	FSM	ENSMUSG00000022010.20	ENSMUST00000177207.2	1476	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	1157	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6275	False	NA	29	True	AATAAA	-19	NA	76741653	76745203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_76741734_76742688_76742738_76743856
transcript_41969.known	chr14	+	801	2	FSM	ENSMUSG00000022010.20	ENSMUST00000134109.2	801	2	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAAAGGAGGGGAATGGGA	6591	False	NA	NA	False	NA	NA	NA	76741969	76743177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_76742282_76742688
transcript_41973.nnic	chr14	+	727	4	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10690	7	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	4.24264068711928	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCCACCCTCCTGTTCAC	NA	False	NA	13	True	AATAAA	-29	NA	76753341	76768193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_76753538_76764032_76764202_76766569_76766669_76767930
transcript_41975.known	chr14	-	865	5	FSM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	35.7587401903367	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACCATGTGCGAGTTA	NA	False	NA	-4	True	AATAAA	-16	NA	76794298	76770255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_76770687_76777345_76777495_76787421_76787495_76793870_76793989_76794204
transcript_41979.known	chr14	-	748	3	FSM	ENSMUSG00000052584.11	ENSMUST00000064517.9	748	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCATGTGCGAGTTACC	NA	False	NA	-2	True	AATAAA	-18	NA	76794112	76770253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_76770687_76787421_76787495_76793870
transcript_41980.nic	chr14	-	674	2	ISM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	16710	0	16344	0	3prime_fragment	FALSE	canonical	3	106	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACCATGTGCGAGTTA	NA	False	NA	-4	True	AATAAA	-16	NA	76777588	76770255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_76770687_76777345
transcript_41983.known	chr14	+	2252	1	FSM	ENSMUSG00000101009.7	ENSMUST00000185809.2	2252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAGAAGAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	76915018	76917270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_76915000_76917300
transcript_41985.known	chr14	-	2444	8	FSM	ENSMUSG00000044350.15	ENSMUST00000062789.15	2444	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	13.9737362978714	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATCCATTCCTTT	NA	False	NA	1	True	NA	NA	NA	77274081	77261639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_77262415_77266967_77267129_77268176_77268403_77270625_77270792_77271444_77271624_77272232_77272846_77273251_77273431_77273936
transcript_41986.nnic	chr14	-	2568	7	NIC	ENSMUSG00000044350.15	novel	2444	8	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_6	20.3258182833776	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATCCATTCCTTT	NA	False	NA	1	True	NA	NA	NA	77274384	77261639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_77262415_77266967_77267129_77268176_77268403_77270625_77270792_77271444_77271624_77272232_77272846_77273936
transcript_41991.known	chr14	+	3142	19	FSM	ENSMUSG00000022012.10	ENSMUST00000022589.9	3142	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.33333333333333	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTGAATATGT	NA	False	NA	NA	False	NA	NA	NA	77394202	77958847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_77394483_77506246_77506318_77549498_77549569_77618018_77618129_77679197_77679340_77744243_77744388_77745576_77745715_77815051_77815226_77816403_77816611_77819835_77820070_77830219_77830433_77848726_77848834_77852878_77852997_77875055_77875241_77902058_77902167_77906176_77906234_77936634_77936738_77945039_77945126_77958252
transcript_41996.known	chr14	-	468	1	FSM	ENSMUSG00000063556.6	ENSMUST00000099431.6	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	NA	False	NA	NA	False	NA	NA	NA	77489754	77489286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_77489300_77489800
transcript_41997.known	chr14	-	6193	6	FSM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_3	59.8618409339372	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACACTCAATGTTTCTGT	NA	False	NA	2	True	AATAAA	-22	NA	78112366	78058120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094431_78112237
transcript_41998.known	chr14	-	674	5	FSM	ENSMUSG00000022013.5	ENSMUST00000022590.5	674	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	265.32856989024	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTCCTTCAGAAGAATG	NA	False	NA	-139	True	NA	NA	NA	78112565	78063786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78112237
transcript_42.known	ERCC-00126	+	1111	1	FSM	ERCC-00126A	DQ459427	1111	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00126_+_0_1100
transcript_42000.known	chr14	-	9364	12	FSM	ENSMUSG00000022016.18	ENSMUST00000123853.9	9364	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	17.0725239604508	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGGTTTTCCTTCTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	78774248	78729685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740463_78745164_78745321_78747319_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
transcript_42001.nic	chr14	-	4465	7	ISM	ENSMUSG00000022016.18	ENSMUST00000123853.9	9364	12	-72	18456	-72	-14828	5prime_fragment	FALSE	canonical	3	71	junction_2	3.39934634239519	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGCCATCTTTGCAAAT	NA	False	NA	NA	False	AGTAAA	-39	NA	78774320	78748141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
transcript_42005.nic	chr14	-	1818	7	ISM	ENSMUSG00000022016.18	ENSMUST00000123853.9	9364	12	-72	21103	-72	-17475	5prime_fragment	FALSE	canonical	3	71	junction_2	3.39934634239519	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAATGTAAAAAATCTTCA	NA	False	NA	NA	False	AAGAAA	-42	NA	78774320	78750788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
transcript_42010.nnic	chr14	-	4091	32	NNC	ENSMUSG00000034731.12	novel	15257	30	NA	NA	-13	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_31	8.609580124905	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCCGCTGCCTGTTGTTG	NA	False	NA	-9	True	AATACA	-10	NA	78970229	78807442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_78807598_78813326_78813458_78814888_78814998_78816128_78816249_78818918_78819012_78821814_78821921_78823032_78823197_78824559_78824695_78824962_78825077_78827313_78827422_78832586_78832684_78832816_78832928_78834084_78834203_78836447_78836580_78840465_78840574_78841716_78841991_78844340_78844441_78846948_78847035_78850294_78850380_78853666_78853807_78853918_78854028_78855962_78856123_78857211_78857315_78861816_78861943_78862245_78862353_78865126_78865260_78865500_78865606_78889120_78889202_78891125_78891237_78962346_78962542_78969797_78969921_78969977
transcript_42014.known	chr14	+	7054	45	FSM	ENSMUSG00000058997.9	ENSMUST00000040990.7	7054	45	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_28	13.7905487757808	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTATGTGTGTGTGGTTT	9206	False	NA	26	True	AATAAA	-35	NA	79086491	79439750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293_79302446_79318552_79318662_79320212_79320352_79324059_79324260_79329730_79329842_79331165_79331231_79331637_79331764_79333111_79333222_79333824_79333980_79335673_79335870_79339675_79339758_79340931_79341137_79394511_79394621_79397404_79397562_79401543_79401653_79418180_79418307_79420412_79420572_79434851_79434951_79435661_79435901_79438537
transcript_42021.known	chr14	+	3406	26	FSM	ENSMUSG00000058997.9	ENSMUST00000227255.2	3406	26	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_16	9.45524193238862	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCAGTCTCCGTCCTTTTG	9408	False	NA	3	True	AATAAA	-19	NA	79086693	79302708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293
transcript_42027.known	chr14	+	3236	13	FSM	ENSMUSG00000058997.9	ENSMUST00000228884.2	3236	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	18.263503375737	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACAGGTTTGTTTTAT	9398	False	NA	NA	False	AATAAA	-11	NA	79086683	79195725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79193951
transcript_42033.known	chr14	-	918	5	FSM	ENSMUSG00000022018.8	ENSMUST00000022595.8	918	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	11.7046999107196	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTACTTTGAAAGCTGCC	NA	False	NA	-11	True	AATAAA	-14	NA	79539085	79526195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_79526560_79527683_79527747_79529110_79529219_79538154_79538341_79538888
transcript_42038.known	chr14	-	13223	20	FSM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_14	26.2237337258888	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGGTGTGATACTTGTA	NA	False	NA	NA	False	NA	NA	NA	79628218	79562708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
transcript_42044.nic	chr14	-	2218	16	NIC	ENSMUSG00000022020.16	novel	2154	16	NA	NA	-31	-2214	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	58.0262009785235	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAGAAGAAGAAGAAGTT	NA	False	NA	NA	False	AAGAAA	-5	NA	79628249	79580630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_79580760_79582334_79582549_79588128_79588271_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
transcript_42048.nic	chr14	-	2076	15	ISM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	-31	17922	-31	-2214	5prime_fragment	FALSE	canonical	3	151	junction_9	25.5670387293436	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAGAAGAAGAAGAAGTT	NA	False	NA	NA	False	AAGAAA	-5	NA	79628249	79580630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
transcript_42058.known	chr14	+	1799	11	FSM	ENSMUSG00000022022.4	ENSMUST00000022600.4	1799	11	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.5683489722851	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGATGTGCCTACAGAGT	NA	False	NA	1	True	AATAAA	-12	NA	79635211	79661027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_79635477_79637131_79637240_79638861_79639288_79640264_79640357_79644016_79644099_79644285_79644394_79649081_79649255_79650426_79650545_79653317_79653455_79656627_79656727_79660836
transcript_42060.known	chr14	+	4235	9	FSM	ENSMUSG00000036461.17	ENSMUST00000040131.13	4235	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	6.51440711039769	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTGTTTGTAATTCT	NA	False	NA	NA	False	ATTAAA	-39	NA	79718633	79819934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_79719078_79773562_79773863_79798186_79798368_79802901_79803013_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
transcript_42062.known	chr14	+	3888	9	FSM	ENSMUSG00000036461.17	ENSMUST00000110835.3	3888	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	8.6854763830201	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTGTTTGTAATTCT	NA	False	NA	NA	False	ATTAAA	-39	NA	79753113	79819934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_79753211_79773562_79773863_79798186_79798368_79802901_79803013_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
transcript_42067.nic	chr14	+	1303	6	ISM	ENSMUSG00000036461.17	ENSMUST00000040131.13	4235	9	-28	13200	-28	-13200	5prime_fragment	FALSE	canonical	3	19	junction_5	3.286335345031	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGGAAGGGTAAGTACTG	NA	False	NA	NA	False	AATAAA	-1	NA	79718605	79806734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_79719078_79773562_79773863_79798186_79798368_79802901_79803013_79804589_79804755_79806660
transcript_42071.known	chr14	-	3704	10	FSM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_1	16.1780219761789	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTGTGTTTGTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	79718960	79697376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
transcript_42074.nic	chr14	-	1321	9	ISM	ENSMUSG00000022023.7	ENSMUST00000227584.2	1512	11	-480	4643	78	-1883	5prime_fragment	FALSE	canonical	3	341	junction_1	13.7925478066962	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACTCCAAAACAGAATCCA	NA	False	NA	NA	False	AATAAA	-44	NA	79718882	79703734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
transcript_42077.nic	chr14	-	1379	8	ISM	ENSMUSG00000022023.7	ENSMUST00000227584.2	1512	11	-592	5620	-34	-2860	5prime_fragment	FALSE	canonical	3	345	junction_2	13.3248272186983	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTCTCACTTGACTTTC	NA	False	NA	NA	False	CATAAA	-9	NA	79718994	79704711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
transcript_42080.nic	chr14	-	988	5	ISM	ENSMUSG00000022023.7	ENSMUST00000227584.2	1512	11	-592	10776	-34	-8016	5prime_fragment	FALSE	canonical	3	347	junction_3	12.3768937944866	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTTCAAAGGGTGGATG	NA	False	NA	NA	False	NA	NA	NA	79718994	79709867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
transcript_42084.known	chr14	+	7392	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	0	0	0	0	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTGAGTGGATTGAATAA	NA	False	NA	NA	False	AATAAA	-18	NA	79825130	79872636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
transcript_42086.nic	chr14	+	1013	12	ISM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	-85	10293	-85	0	5prime_fragment	FALSE	canonical	3	1684	junction_8	88.4524432152318	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCAAAGAAGAAGAAAAG	NA	False	NA	16	True	NA	NA	NA	79825045	79862343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280
transcript_42090.nic	chr14	+	859	10	ISM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	-85	24849	-85	-14556	5prime_fragment	FALSE	canonical	3	1684	junction_8	84.3802387491172	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGCAAGCAGGAAGAATG	NA	False	NA	NA	False	NA	NA	NA	79825045	79847787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679
transcript_42092.known	chr14	+	897	11	FSM	ENSMUSG00000022024.11	ENSMUST00000228675.2	897	11	0	0	0	0	multi-exon	FALSE	canonical	3	1684	junction_7	92.1325132621487	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCAAAGAAGAAGAAAAG	NA	False	NA	16	True	NA	NA	NA	79825248	79862343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280
transcript_42095.known	chr14	-	4582	28	FSM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	42.6759570646689	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACGTATGTCTCTTCT	NA	False	NA	NA	False	AATAAA	-24	NA	87378660	86892802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_42100.nic	chr14	-	3449	27	ISM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	-58	116694	-47	0	5prime_fragment	FALSE	non_canonical	0	0	junction_4	43.0116951207432	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTATTCTTACCTGCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	87378718	87009496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_42101.nnic	chr14	-	4416	26	NNC	ENSMUSG00000022021.15	novel	4582	28	NA	NA	54289	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	54.772197326746	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACGTATGTCTCTTCT	NA	False	NA	NA	False	AATAAA	-24	NA	87324290	86892802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87324019
transcript_42104.nic	chr14	-	3197	25	ISM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	-58	155040	-47	0	5prime_fragment	FALSE	non_canonical	0	0	junction_2	44.5059101880488	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAGCGAGCAGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	87378718	87047842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_42105.nic	chr14	-	3132	24	ISM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	-58	173625	-47	-18585	5prime_fragment	FALSE	non_canonical	0	0	junction_1	45.4119559883944	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTGAAAATTCTACCTT	NA	False	NA	NA	False	NA	NA	NA	87378718	87066427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_42106.nic	chr14	-	2170	17	ISM	ENSMUSG00000022021.15	ENSMUST00000227666.2	3337	27	-112	193390	-47	0	5prime_fragment	FALSE	canonical	3	166	junction_1	18.9282155458458	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAAGGTAAGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	87378718	87202886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_42109.nic	chr14	-	1566	14	ISM	ENSMUSG00000022021.15	ENSMUST00000227666.2	3337	27	-28	206553	26	-13163	5prime_fragment	FALSE	canonical	3	173	junction_5	18.2899073277907	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTAACTCTGCAGGCCT	NA	False	NA	NA	False	AAGAAA	-1	NA	87378634	87216049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_42112.nic	chr14	-	722	6	ISM	ENSMUSG00000022021.15	ENSMUST00000227666.2	3337	27	-28	235265	26	-41875	5prime_fragment	FALSE	canonical	3	183	junction_2	17.8818343578057	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTATTGCTAATAATTT	NA	False	NA	NA	False	NA	NA	NA	87378634	87244761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_42113.known	chr14	-	2090	16	FSM	ENSMUSG00000022021.15	ENSMUST00000228000.2	2090	16	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_15	51.0574404198078	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAAGGTAAGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	87378671	87202886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87378433
transcript_42116.nic	chr14	-	543	4	ISM	ENSMUSG00000022021.15	ENSMUST00000227666.2	3337	27	-112	301278	-47	2400	5prime_fragment	FALSE	canonical	3	194	junction_3	15.9652400197707	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTCGGTATCAAAAAAGA	NA	False	NA	NA	False	GATAAA	-22	NA	87378718	87310774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_87310823_87328413_87328591_87352449_87352483_87378433
transcript_42118.known	chr14	-	3337	27	FSM	ENSMUSG00000022021.15	ENSMUST00000227666.2	3337	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	43.0116951207432	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTATTCTTACCTGCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	87378606	87009496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_87009582_87010042_87010139_87047771_87047908_87066427_87066593_87072412_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_42121.known	chr14	+	2657	14	FSM	ENSMUSG00000022019.17	ENSMUST00000168275.9	2657	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_12	16.6232175269033	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCTGGTTCACTTGTC	NA	False	NA	7	True	AATAAA	-21	NA	87654074	87782940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080_87749207_87776832_87776958_87782692
transcript_42123.known	chr14	+	5280	12	FSM	ENSMUSG00000022019.17	ENSMUST00000169504.8	5280	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_9	9.05812269605902	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTGTTTTTATTACAA	NA	False	NA	NA	False	ATTAAA	-22	NA	87654074	87752202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080
transcript_42128.known	chr14	-	792	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1543	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCCAGATTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	88361244	88360452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_88360500_88361200
transcript_42129.known	chr14	-	3220	1	FSM	ENSMUSG00000062093.6	ENSMUST00000228705.2	3220	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAATAGAGTT	NA	False	NA	NA	False	AATAAA	-16	NA	90136883	90133663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_90133700_90136900
transcript_42132.nnic	chr14	-	2676	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	-192	284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGACAATTCAGATAAATA	NA	False	NA	NA	False	GATAAA	-2	NA	99283762	99271695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_99271753_99271806_99273947_99277950_99278097_99283429
transcript_42134.known	chr14	-	952	3	FSM	ENSMUSG00000033186.10	ENSMUST00000227948.2	952	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	387	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCATTTCTCTGTAAAT	NA	False	NA	NA	False	ATTAAA	-19	NA	99283529	99273221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_99273947_99277950_99278097_99283448
transcript_42135.known	chr14	-	818	2	FSM	ENSMUSG00000033186.10	ENSMUST00000228445.2	818	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCATTATTTGTAGTTTG	NA	False	NA	NA	False	AAAAAG	-18	NA	99283570	99273269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_99273947_99283429
transcript_42143.known	chr14	+	2726	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	5	True	AATAAA	-16	NA	99283812	99311976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
transcript_42146.nnic	chr14	+	2750	12	NNC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	93.6248006982398	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTCGTTTTCCTTGTTCT	NA	False	NA	3	True	AATAAA	-14	NA	99283817	99311974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310216_99311081
transcript_42160.known	chr14	+	1071	2	FSM	ENSMUSG00000022070.8	ENSMUST00000226823.2	1071	2	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACT	NA	False	NA	NA	False	AATAAA	-44	NA	99283657	99285348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_99284117_99284736
transcript_42163.known	chr14	+	2797	18	FSM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	0	0	0	0	multi-exon	FALSE	canonical	2	66	junction_8	18.7005171736119	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGACTGTAGAGTTTTTA	NA	False	NA	15	True	AATAAA	-17	NA	99337342	99491929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99491596
transcript_42168.known	chr14	+	1993	5	FSM	ENSMUSG00000022064.11	ENSMUST00000228279.2	1993	5	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	8.15475321515004	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGGTATGGCCCACGTC	NA	False	NA	NA	False	AATAAA	-15	NA	99337393	99351653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405
transcript_42169.known	chr14	+	1546	4	FSM	ENSMUSG00000022064.11	ENSMUST00000228246.2	1546	4	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	7.25718035235908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATTGTGACATGTGTT	NA	False	NA	NA	False	NA	NA	NA	99336859	99345200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734
transcript_42173.nic	chr14	-	3717	22	NIC	ENSMUSG00000033166.12	novel	5150	21	NA	NA	-563	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_20	122.265648850725	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTATTGAGTTGCTGA	1964	False	NA	-11	True	AATACA	-24	NA	99337769	99314705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_99314902_99315697_99315821_99316563_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085_99320173_99321462_99321591_99323309_99323395_99323482_99323548_99324824_99324927_99325169_99325287_99326197_99326345_99327053_99327192_99327400_99327515_99328763_99328929_99332608_99332777_99334192_99334267_99335020_99335215_99336118_99336277_99336554_99336623_99336881
transcript_42178.known	chr14	-	5150	21	FSM	ENSMUSG00000033166.12	ENSMUST00000042471.11	5150	21	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_13	28.371596712205	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCATCTATGCTGAATGT	2527	False	NA	NA	False	NA	NA	NA	99337206	99312641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_99314902_99315697_99315821_99316563_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085_99320173_99321462_99321591_99323309_99323395_99323482_99323548_99324824_99324927_99325169_99325287_99326197_99326345_99327053_99327192_99327400_99327515_99328763_99328929_99332608_99332777_99334192_99334267_99335020_99335215_99336118_99336277_99336881
transcript_422.known	chr1	+	637	4	FSM	ENSMUSG00000056763.17	ENSMUST00000191360.7	637	4	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	31.8363872880633	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAATATTAAAGGAGATTA	NA	False	NA	NA	False	NA	NA	NA	10108473	10129273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944
transcript_42202.nic	chr14	-	780	4	ISM	ENSMUSG00000033166.12	ENSMUST00000228643.2	2971	20	-59	19487	-29	930	5prime_fragment	FALSE	canonical	3	415	junction_3	11.1455023315337	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTTCAGCATGATTTG	2498	False	NA	NA	False	NA	NA	NA	99337235	99334192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_99334267_99335020_99335215_99336118_99336277_99336881
transcript_42211.known	chr14	+	3352	4	FSM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	0	0	0	0	multi-exon	FALSE	canonical	3	3464	junction_1	114.952163963972	868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTGCCTTCTTGACCC	NA	False	NA	22	True	AATAAA	-18	NA	99536126	99552472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_99536659_99538816_99539691_99540853_99540914_99550586
transcript_42217.known	chr14	+	2852	3	FSM	ENSMUSG00000005148.9	ENSMUST00000226784.2	2852	3	0	0	0	0	multi-exon	FALSE	canonical	3	3464	junction_1	130.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAATAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	99536589	99542762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_99536659_99538816_99539691_99540853
transcript_4222.known	chr1	-	2910	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	0	0	0	0	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	7180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287401	128259326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
transcript_42220.known	chr14	-	5890	8	FSM	ENSMUSG00000072294.6	ENSMUST00000228216.2	5890	8	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_2	8.24126005820341	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTGTTCAGATATGCCT	NA	False	NA	NA	False	AATAAA	-11	NA	100522115	100108067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_100112751_100137517_100137676_100179469_100179533_100224866_100225003_100260057_100260605_100347206_100347297_100387167_100387232_100521966
transcript_42223.known	chr14	-	6483	19	FSM	ENSMUSG00000033083.17	ENSMUST00000161991.8	6483	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_15	4.49553962758753	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGCTGTTATTTT	NA	False	NA	NA	False	AATAAA	-21	NA	101846469	101679795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_101682208_101684962_101685140_101686637_101686808_101689853_101690014_101692282_101692528_101695501_101695661_101696170_101696330_101700310_101700521_101703036_101703201_101714415_101714643_101716566_101716642_101724863_101724984_101726947_101727059_101727288_101727381_101731781_101731915_101738447_101738553_101742543_101742634_101744523_101745127_101845398
transcript_42225.known	chr14	-	3103	12	FSM	ENSMUSG00000033083.17	ENSMUST00000160297.8	3103	12	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	4.82418151324422	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	101846268	101700007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_101700521_101703036_101703201_101714415_101714643_101716566_101716642_101724863_101724984_101726947_101727059_101727288_101727381_101731781_101731915_101738447_101738553_101742543_101742634_101744523_101745127_101845398
transcript_42230.known	chr14	-	1090	4	FSM	ENSMUSG00000075486.11	ENSMUST00000100339.9	1090	4	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	9.8770215933527	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATGACGTGTCTTGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	101878122	101871201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_101871829_101874389_101874543_101877723_101877736_101877824
transcript_42236.known	chr14	-	519	3	FSM	ENSMUSG00000075486.11	ENSMUST00000168587.3	519	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	193.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAATAAAAATAATTAAAAG	NA	False	NA	-23	True	NA	NA	NA	101877893	101871531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_101871829_101874389_101874543_101877824
transcript_42240.known	chr14	+	903	9	FSM	ENSMUSG00000022111.10	ENSMUST00000002289.8	903	9	0	0	0	0	multi-exon	FALSE	canonical	3	3225	junction_5	471.372729376658	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	117	False	NA	22	True	AATAAA	-18	NA	101891429	101933561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_101891542_101891643_101891656_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
transcript_42248.nic	chr14	+	532	4	ISM	ENSMUSG00000022111.10	ENSMUST00000002289.8	903	9	-261	29596	-234	-1293	5prime_fragment	FALSE	canonical	3	4015	junction_1	285.220772190401	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAGGAAGAAAAGATAAA	3694	False	NA	NA	False	NA	NA	NA	101891168	101903965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_101891542_101891643_101891656_101903196_101903326_101903947
transcript_42251.nic	chr14	+	5045	28	NIC	ENSMUSG00000033060.17	novel	6092	31	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	5.95755448303927	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTTCTAATTATTTAA	NA	False	NA	39	True	AATAAA	-39	NA	101967328	102172146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_101967662_102031676_102031748_102044889_102044960_102078307_102078415_102112887_102112919_102114241_102114356_102118238_102118438_102121597_102121851_102126112_102126143_102133902_102134021_102135992_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155066_102155093_102155375_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
transcript_42255.known	chr14	+	541	1	FSM	ENSMUSG00000115512.2	ENSMUST00000227837.2	541	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTGGGGATAAATTCAG	NA	False	NA	NA	False	AAAAAG	-35	NA	103247681	103248222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_103247700_103248200
transcript_42259.known	chr14	+	2445	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	4.96655480858378	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTGCATCTTGTATCTT	NA	False	NA	6	True	NA	NA	NA	103307651	103315064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
transcript_42265.known	chr14	-	3352	5	FSM	ENSMUSG00000022124.16	ENSMUST00000145693.8	3352	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	32.5451609306207	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTTGTATTTTTATAAC	9922	False	NA	-4	True	AATAAA	-13	NA	103336435	103318469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336204
transcript_42266.known	chr14	-	4309	5	FSM	ENSMUSG00000022124.16	ENSMUST00000022720.15	4309	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	52.2894587847302	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGTTTGCAAAACTTGT	9813	False	NA	NA	False	AATAAA	-12	NA	103336990	103317674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336597
transcript_42268.known	chr14	-	2534	5	FSM	ENSMUSG00000022124.16	ENSMUST00000132004.8	2534	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	61.6050931336038	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAAGTTTTGGTTATATT	9946	False	NA	NA	False	AATAAA	-32	NA	103336411	103319119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332772_103332978_103336204
transcript_42269.nic	chr14	-	3412	5	NIC	ENSMUSG00000022124.16	novel	4309	5	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	68.9759922001851	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTTGTATTTTTATAAC	9771	False	NA	-4	True	AATAAA	-13	NA	103337032	103318469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_103320947_103326737_103326910_103329739_103329863_103332772_103332978_103336597
transcript_42275.known	chr14	-	344	2	FSM	ENSMUSG00000033004.17	ENSMUST00000162852.2	344	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACGTTTTAGAACTTTC	NA	False	NA	NA	False	NA	NA	NA	103352832	103351568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_103351672_103352591
transcript_42276.nic	chr14	-	668	2	ISM	ENSMUSG00000033004.17	ENSMUST00000162537.2	3495	3	-22	12004	-22	-12004	5prime_fragment	FALSE	canonical	3	11	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAAATCAAAAGTAAAGACA	NA	False	NA	NA	False	AAGAAA	-38	NA	103584272	103561134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_103561182_103583651
transcript_42277.known	chr14	-	5099	28	FSM	ENSMUSG00000033004.17	ENSMUST00000161008.8	5099	28	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_23	9.27154740163962	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGTAAAGTATTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	103392699	103350846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376155_103376255_103376672_103376913_103378306_103378373_103380179_103380405_103380578_103380736_103381689_103381851_103383335_103383486_103384268_103384466_103385943_103386102_103389555_103389724_103391361_103391607_103392181_103392352_103392559
transcript_42278.known	chr14	+	1998	8	FSM	ENSMUSG00000055717.14	ENSMUST00000160805.8	1998	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	16.4812818998167	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTTCTATAACATGGTTT	NA	False	NA	NA	False	AATACA	-16	NA	103888081	103941746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_103888345_103894368_103894509_103921669_103921820_103923104_103923255_103925497_103925840_103932603_103932760_103939952_103940275_103941271
transcript_42280.known	chr14	+	2863	7	FSM	ENSMUSG00000055717.14	ENSMUST00000069443.14	2863	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	8.46069343099804	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAGCTCACGCATGAATG	NA	False	NA	27	True	AATAAA	-17	NA	103887663	103942343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_103888345_103894368_103894509_103923104_103923255_103925497_103925840_103932603_103932760_103939952_103940275_103941271
transcript_42285.known	chr14	-	3420	6	FSM	ENSMUSG00000022120.5	ENSMUST00000022716.4	3420	6	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	11.8490505948789	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTTTGATGTCATCAT	NA	False	NA	-1	True	AATAAA	-18	NA	104760068	104714971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_104717734_104740782_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
transcript_42287.nic	chr14	-	661	4	ISM	ENSMUSG00000022120.5	ENSMUST00000228448.2	1056	6	-94	3478	-82	187	5prime_fragment	FALSE	canonical	3	84	junction_2	9.84321537348893	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTAAGTTGTAGTCTGGG	NA	False	NA	NA	False	AGTAAA	-23	NA	104760163	104743531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_104743778_104745374_104745467_104747737_104747874_104759976
transcript_42288.nic	chr14	-	474	4	ISM	ENSMUSG00000022120.5	ENSMUST00000228448.2	1056	6	-94	3665	-82	0	5prime_fragment	FALSE	canonical	3	84	junction_2	9.84321537348893	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGTCACAGATCAAGACCA	NA	False	NA	NA	False	AGTAAA	-12	NA	104760163	104743718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_104743778_104745374_104745467_104747737_104747874_104759976
transcript_42289.known	chr14	-	3633	22	FSM	ENSMUSG00000022119.16	ENSMUST00000022715.14	3633	22	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_9	46.4492994023159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAAACTACCTTCTGAT	NA	False	NA	NA	False	GATAAA	-2	NA	105414763	105352498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526_105376599_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
transcript_42294.known	chr14	-	3634	21	FSM	ENSMUSG00000022119.16	ENSMUST00000100327.10	3634	21	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_11	26.8445059555955	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCAATAGGACATATGCAA	NA	False	NA	NA	False	AGTAAA	-16	NA	105414759	105352421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
transcript_42298.known	chr14	-	4212	21	FSM	ENSMUSG00000022119.16	ENSMUST00000163499.2	4212	21	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_13	60.3468309027077	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAGAAGTTAATAAAGGT	NA	False	NA	NA	False	AAAACA	-18	NA	105414700	105353570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526_105376599_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387845_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
transcript_423.known	chr1	+	454	4	FSM	ENSMUSG00000056763.17	ENSMUST00000190063.7	454	4	0	0	0	0	multi-exon	FALSE	canonical	2	91	junction_2	7.84573486395988	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAATTTATTCCTAAAAT	NA	False	NA	NA	False	NA	NA	NA	10110001	10129083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944
transcript_42305.nic	chr14	-	2693	15	ISM	ENSMUSG00000022119.16	ENSMUST00000100327.10	3634	21	-35	16497	-31	-15348	5prime_fragment	FALSE	canonical	3	161	junction_5	20.0265130387144	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAAATAGTAAAATTAAAT	NA	False	NA	NA	False	AAAAAG	-41	NA	105414794	105368918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_105368994_105369317_105369444_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273_105397411_105397930_105398050_105414217
transcript_42311.nic	chr14	-	827	3	ISM	ENSMUSG00000022119.16	ENSMUST00000163499.2	4212	21	-94	43709	-31	-43709	5prime_fragment	FALSE	canonical	3	170	junction_1	3	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGTAAGAATTTGTTG	NA	False	NA	NA	False	TATAAA	-5	NA	105414794	105397279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_105397411_105397930_105398050_105414217
transcript_42312.nic	chr14	-	719	3	ISM	ENSMUSG00000022119.16	ENSMUST00000163499.2	4212	21	-94	43817	-31	-43817	5prime_fragment	FALSE	canonical	3	170	junction_1	3	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTGATGCTGTGAATAC	NA	False	NA	NA	False	NA	NA	NA	105414794	105397387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_105397411_105397930_105398050_105414217
transcript_42314.known	chr14	+	2532	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	0	0	0	0	multi-exon	TRUE	canonical	3	271	junction_7	54.1807255433901	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGTATTTCTTGTATT	NA	False	NA	10	True	AATAAA	-17	NA	105496007	105546732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
transcript_42315.known	chr14	+	1695	8	FSM	ENSMUSG00000053253.17	ENSMUST00000138283.2	1695	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_7	99.9552961302691	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCCTCGTTTAGTGATT	NA	False	NA	6	True	AATAAA	-16	NA	105496187	105546305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545549
transcript_42316.known	chr14	-	2087	2	FSM	ENSMUSG00000022114.6	ENSMUST00000022709.6	2087	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCTTGTTTTGTCTTA	NA	False	NA	-4	True	TATAAA	-30	NA	106134253	106129380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_106131236_106134021
transcript_42317.known	chr14	+	3075	1	FSM	ENSMUSG00000022113.7	ENSMUST00000022708.7	3075	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGTGACATGCTTATAT	NA	False	NA	NA	False	AATAAA	-15	NA	106343631	106346706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_106343600_106346700
transcript_42318.nnic	chr14	+	2055	2	Genic_Genomic	ENSMUSG00000058126.8	novel	2147	1	NA	NA	8	-13	multi-exon	FALSE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAAGAAGAAGATGTTCTG	NA	False	NA	NA	False	NA	NA	NA	113552047	113554173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr14_+_113553477_113553547
transcript_42319.known	chr14	+	2147	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	865	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTTGCAGACTCAGT	NA	False	NA	NA	False	NA	NA	NA	113552039	113554186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_113552000_113554200
transcript_42325.known	chr14	+	2423	10	FSM	ENSMUSG00000058571.12	ENSMUST00000125435.2	2423	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.32591767713239	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGGTTTTGGTTTTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	117162942	118212818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_117163508_117424073_117424233_117673063_117673456_117861796_117861963_118107764_118107896_118125933_118126078_118129753_118129784_118188549_118188687_118202110_118202287_118212295
transcript_42326.known	chr14	-	1682	12	FSM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_8	15.4084875183551	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTAATGTCTTTTTATTT	250	False	NA	-4	True	ATTAAA	-20	NA	118370159	118349887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
transcript_42327.known	chr14	+	1875	9	FSM	ENSMUSG00000022131.4	ENSMUST00000022728.4	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	22.6463987203264	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374569	118400673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_118374753_118377148_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
transcript_42328.nnic	chr14	+	1890	9	NNC	ENSMUSG00000022131.4	novel	1875	9	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	60.506068910482	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374528	118400673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_118374753_118377148_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395334_118395467_118397404_118397597_118398968_118399047_118400000
transcript_42330.nnic	chr14	+	1876	9	NNC	ENSMUSG00000022131.4	novel	1875	9	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	53.8678939629164	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374543	118400673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_118374753_118377173_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
transcript_42332.nnic	chr14	+	1866	8	NIC	ENSMUSG00000022131.4	novel	1875	9	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	66.9044399246616	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374528	118400673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_118374753_118377148_118377308_118385496_118385698_118390980_118391162_118395308_118395467_118397404_118397597_118398968_118399047_118400000
transcript_42336.known	chr14	+	2322	2	FSM	ENSMUSG00000090534.2	ENSMUST00000164755.2	2322	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTATGTAACATTGCC	NA	False	NA	NA	False	CATAAA	-22	NA	118473643	118476171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_118474357_118474562
transcript_42340.known	chr14	-	3799	1	FSM	ENSMUSG00000061517.9	ENSMUST00000170662.2	3799	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTATTTCTTGTTGAGT	NA	False	NA	NA	False	AATAAA	-25	NA	118474442	118470643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_118470600_118474400
transcript_42341.known	chr14	-	5715	31	FSM	ENSMUSG00000032849.15	ENSMUST00000036554.14	5715	31	0	0	0	0	multi-exon	TRUE	canonical	3	201	junction_24	29.291276668812	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCACAGATCTGTTTGTTC	NA	False	NA	-8	True	AATAAA	-18	NA	118943617	118720103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_118721853_118727910_118728046_118737377_118737484_118738119_118738293_118745004_118745095_118753844_118754001_118763623_118763816_118765362_118765464_118766378_118766490_118767269_118767390_118771403_118771555_118790695_118790776_118832173_118832321_118834091_118834187_118834550_118834589_118834905_118835047_118836725_118836936_118841568_118841666_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863_118865114_118867029_118867156_118868390_118868555_118869509_118869600_118891561_118891787_118905758_118905880_118906408_118906520_118943447
transcript_42352.known	chr14	-	5504	30	FSM	ENSMUSG00000032849.15	ENSMUST00000166646.2	5504	30	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_27	53.1124264689735	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCACAGATCTGTTTGTTC	NA	False	NA	-8	True	AATAAA	-18	NA	118943631	118720103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_118721853_118727910_118728046_118737377_118737484_118738119_118738293_118745004_118745095_118753844_118754001_118763623_118763816_118765362_118765464_118766378_118766490_118767269_118767390_118771403_118771555_118790695_118790776_118832173_118832321_118834091_118834187_118834550_118834589_118834905_118835047_118836725_118836936_118841568_118841666_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863_118865114_118867029_118867156_118868390_118868555_118869509_118869600_118905758_118905880_118906408_118906520_118943447
transcript_42358.nic	chr14	-	3601	24	ISM	ENSMUSG00000032849.15	ENSMUST00000036554.14	5715	31	-294	45066	-280	0	5prime_fragment	FALSE	canonical	3	201	junction_17	22.6862382608316	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTCTCATGTATGCT	NA	False	NA	NA	False	AATAAA	-15	NA	118943911	118765169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_118765464_118766378_118766490_118767269_118767390_118771403_118771555_118790695_118790776_118832173_118832321_118834091_118834187_118834550_118834589_118834905_118835047_118836725_118836936_118841568_118841666_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863_118865114_118867029_118867156_118868390_118868555_118869509_118869600_118891561_118891787_118905758_118905880_118906408_118906520_118943447
transcript_42364.nnic	chr14	-	2468	14	NNC	ENSMUSG00000032849.15	novel	5715	31	NA	NA	-283	-80660	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	63.4257708062493	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGCCCGGTAGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	118943914	118846894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_-_118847243_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863_118865114_118867029_118867156_118868390_118868555_118869509_118869600_118891561_118891787_118905758_118905880_118906408_118906520_118943447
transcript_42368.known	chr14	+	2128	5	FSM	ENSMUSG00000022132.16	ENSMUST00000100314.4	2128	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACGAACAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119092143	119112901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_119092622_119099107_119099270_119099360_119099443_119111012_119111121_119111603
transcript_42373.nic	chr14	-	4362	23	NIC	ENSMUSG00000042156.17	novel	4079	22	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_20	9.99721035469561	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCGACTGTGGCTGCTT	NA	False	NA	-6	True	AGTAAA	-14	NA	119162883	119113669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_119114675_119116755_119116925_119118421_119118553_119120776_119120980_119123017_119123072_119123909_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146984_119148753_119148916_119149853_119149979_119152601_119152687_119159654_119160204_119160322_119160580_119161308_119161508_119161836_119161931_119162552
transcript_42376.known	chr14	-	4079	22	FSM	ENSMUSG00000042156.17	ENSMUST00000004055.10	4079	22	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_20	6.55588223176215	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCGACTGTGGCTGCTT	NA	False	NA	-6	True	AGTAAA	-14	NA	119162799	119113669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_119114675_119116755_119116925_119118421_119118553_119120776_119120980_119123017_119123072_119123909_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146984_119148753_119148916_119149853_119149979_119152601_119152687_119159654_119160204_119160322_119160580_119161836_119161931_119162552
transcript_42384.nic	chr14	-	2601	17	ISM	ENSMUSG00000042156.17	ENSMUST00000004055.10	4079	22	-84	10240	-11	-871	5prime_fragment	FALSE	canonical	3	20	junction_15	6.66145629723711	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTATTTTCAGCTGTAA	NA	False	NA	NA	False	GATAAA	-15	NA	119162883	119123909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_-_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146984_119148753_119148916_119149853_119149979_119152601_119152687_119159654_119160204_119160322_119160580_119161836_119161931_119162552
transcript_42392.known	chr14	+	5141	12	FSM	ENSMUSG00000022136.9	ENSMUST00000022734.9	5141	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_10	14.8340684499182	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTACTTGCTTCTTATT	2329	False	NA	15	True	AATAAA	-17	NA	119175387	119219109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_119175583_119190520_119190632_119195279_119195405_119198197_119198273_119205400_119205554_119207511_119207694_119208094_119208215_119209774_119209881_119210104_119210226_119212543_119212677_119214121_119214271_119215438
transcript_42398.nic	chr14	+	1505	11	ISM	ENSMUSG00000022136.9	ENSMUST00000022734.9	5141	12	-90	4894	-90	-4894	5prime_fragment	FALSE	canonical	3	143	junction_10	14.129401968944	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGAGAAAAAGTTCATTGA	2239	False	NA	NA	False	AAGAAA	-9	NA	119175297	119214215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_119175583_119190520_119190632_119195279_119195405_119198197_119198273_119205400_119205554_119207511_119207694_119208094_119208215_119209774_119209881_119210104_119210226_119212543_119212677_119214121
transcript_42399.nic	chr14	+	1410	10	ISM	ENSMUSG00000022136.9	ENSMUST00000022734.9	5141	12	-90	6434	-90	-6434	5prime_fragment	FALSE	canonical	3	156	junction_8	10.6608780589431	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGTTATTACAGCTTGC	2239	False	NA	NA	False	AGTAAA	-3	NA	119175297	119212675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_119175583_119190520_119190632_119195279_119195405_119198197_119198273_119205400_119205554_119207511_119207694_119208094_119208215_119209774_119209881_119210104_119210226_119212543
transcript_424.known	chr1	+	1356	1	FSM	ENSMUSG00000056763.17	ENSMUST00000190610.2	1356	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAAATAGAATCTT	NA	False	NA	NA	False	NA	NA	NA	10108211	10109567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_10108200_10109600
transcript_42401.known	chr14	+	4552	9	FSM	ENSMUSG00000022139.18	ENSMUST00000088419.13	4552	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	5.41842920042331	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTGTTGCGGTCTTCCTT	6829	False	NA	7	True	AATAAA	-17	NA	120513080	120669109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_120513318_120562205_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120642049_120642145_120666346
transcript_42403.known	chr14	+	2334	9	FSM	ENSMUSG00000022139.18	ENSMUST00000227594.2	2334	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	11.1292126855407	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTTTG	NA	False	NA	NA	False	NA	NA	NA	120543863	120667038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_120543954_120562205_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120642049_120642145_120666346
transcript_42407.known	chr14	+	4191	2	FSM	ENSMUSG00000051615.15	ENSMUST00000062117.14	4191	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGTTTGTTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	120715855	120744606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_120716453_120741012
transcript_42416.known	chr14	+	4518	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	0	0	0	0	multi-exon	TRUE	canonical	3	890	junction_17	126.92017018583	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGCATTACTTCATTA	1831	False	NA	16	True	ATTAAA	-17	NA	121148635	121185411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
transcript_42441.known	chr14	+	4885	27	FSM	ENSMUSG00000025555.15	ENSMUST00000026635.8	4885	27	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_13	25.8768133172464	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGTGTCTTCTCTTTG	NA	False	NA	35	True	NA	NA	NA	121272975	121521156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_121273338_121339400_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477_121472626_121474547_121474644_121476039_121476204_121477385_121477455_121479798_121479875_121480764_121481021_121492819_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
transcript_42444.nnic	chr14	+	4987	27	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	-132	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_13	30.1476887355345	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGTGTCTTCTCTTTG	NA	False	NA	35	True	NA	NA	NA	121272843	121521156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_121273338_121339400_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477_121472626_121474547_121474644_121476039_121476204_121477385_121477455_121479798_121479875_121480764_121481021_121492849_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
transcript_42449.nnic	chr14	+	2774	12	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	10308	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	35.1415085025488	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGTGTCTTCTCTTTG	NA	False	NA	35	True	NA	NA	NA	121502627	121521156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_121502734_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
transcript_42452.nnic	chr14	+	1854	12	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	11476	-938	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	36.2427536216917	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTTTTTTCCAATCTT	NA	False	NA	21	True	AGTAAA	-18	NA	121503795	121520218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_121503920_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
transcript_42453.nnic	chr14	+	2792	12	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	11476	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	36.2427536216917	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGTGTCTTCTCTTTG	NA	False	NA	35	True	NA	NA	NA	121503795	121521156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_121503920_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
transcript_42454.nnic	chr14	+	1940	12	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	12279	-938	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	37.0706272533751	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTTTTTTCCAATCTT	NA	False	NA	21	True	AGTAAA	-18	NA	121504598	121520218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_121504809_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
transcript_42462.known	chr14	-	2676	11	FSM	ENSMUSG00000063410.9	ENSMUST00000079817.8	2676	11	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_7	30.6098023515344	500	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATTTTGCATACTATTC	7303	False	NA	-11	True	AATAAA	-12	NA	121616746	121523754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_121524777_121529391_121529529_121530832_121530902_121531601_121531726_121532066_121532213_121534546_121534733_121539597_121539756_121540158_121540268_121545426_121545484_121574833_121575065_121616309
transcript_42474.known	chr14	-	3121	23	FSM	ENSMUSG00000025557.11	ENSMUST00000088386.8	3121	23	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	5.65119017669934	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATGTGTTTGTGTGT	3138	False	NA	-6	True	AATAAA	-12	NA	121742664	121697032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_121698186_121699878_121699987_121702314_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
transcript_42484.known	chr14	+	2139	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	0	0	0	0	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	8886	False	NA	16	True	AATAAA	-16	NA	122116031	122258446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
transcript_42487.nnic	chr14	+	2111	8	NIC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	124.704057836208	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	8866	False	NA	16	True	AATAAA	-16	NA	122116011	122258446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
transcript_42492.nic	chr14	+	1771	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	2018	False	NA	16	True	AATAAA	-16	NA	122183733	122258446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
transcript_42495.known	chr14	+	913	2	FSM	ENSMUSG00000071229.4	ENSMUST00000045976.7	913	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGTTCTTTGTAACTGA	NA	False	NA	NA	False	AAGAAA	-3	NA	122272085	122275832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_122272425_122275258
transcript_42496.known	chr14	-	3074	3	FSM	ENSMUSG00000085615.3	ENSMUST00000144926.2	3074	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACAATGGCTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	122344365	122340841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_122342854_122343195_122343583_122343690
transcript_42497.known	chr14	-	2257	2	FSM	ENSMUSG00000085615.3	ENSMUST00000131416.3	2257	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATTTGCCACAGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	122344386	122341787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_122342854_122343195
transcript_42500.known	chr14	+	3107	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	0	0	0	0	multi-exon	TRUE	canonical	3	817	junction_12	125.603480743967	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTCCAAAGTGTAGTAATT	NA	False	NA	18	True	ATTAAA	-20	NA	122344449	122397016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
transcript_42504.known	chr14	+	1231	8	FSM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_7	45.2372430997437	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122419115	122639646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
transcript_42505.nnic	chr14	+	1273	8	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19423	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	209.063900005989	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122514875	122639646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr14_+_122514996_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
transcript_42507.nnic	chr14	+	1037	7	NIC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_1	249.458357691664	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122419122	122639646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_122419194_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
transcript_42512.nic	chr14	+	1722	3	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	-19	29556	-19	-29549	5prime_fragment	FALSE	canonical	3	648	junction_1	10.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAATTCACTTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	122419096	122610090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_122419194_122548655_122548843_122608652
transcript_42514.nic	chr14	+	283	2	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	-19	90805	-19	-90798	5prime_fragment	FALSE	canonical	3	648	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGGCGTGGTTTCCAGA	NA	False	NA	NA	False	AAAACA	-5	NA	122419096	122548841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr14_+_122419194_122548655
transcript_42517.known	chr14	-	4767	2	FSM	ENSMUSG00000041703.8	ENSMUST00000039118.7	4767	2	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTGCTACATTTTATC	NA	False	NA	-26	True	AATAAA	-13	NA	122703089	122694206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_122697188_122701303
transcript_42519.known	chr14	+	2440	3	FSM	ENSMUSG00000061524.9	ENSMUST00000075888.6	2440	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCGACTATAGACTGGAAA	658	False	NA	NA	False	ATTAAA	-43	NA	122712846	122717264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_122714160_122715951_122716116_122716301
transcript_42524.known	chr14	+	2592	24	FSM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	20.0942015919555	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCTGCTTGCAATTTT	NA	False	NA	NA	False	TATAAA	-5	NA	122771750	123127356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
transcript_42526.nnic	chr14	+	2455	23	NIC	ENSMUSG00000041650.16	novel	2592	24	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_20	25.4761677645391	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771717	123127240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123114175_123114317_123124458_123124537_123126898
transcript_42527.nnic	chr14	+	2398	23	NIC	ENSMUSG00000041650.16	novel	2592	24	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_16	27.256245019481	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771717	123127240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
transcript_42529.nnic	chr14	+	2455	23	NIC	ENSMUSG00000041650.16	novel	2592	24	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	29.4392847671832	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771717	123127240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
transcript_42544.known	chr14	-	3416	18	FSM	ENSMUSG00000041594.19	ENSMUST00000037726.14	3416	18	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_13	13.8696352514015	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220695	123156382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
transcript_42546.nic	chr14	-	3351	18	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_16	38.2839509410142	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220724	123156382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215579_123215699_123220583
transcript_42550.known	chr14	-	2719	18	FSM	ENSMUSG00000041594.19	ENSMUST00000148661.2	2719	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_17	41.7946868363775	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAAACCTTTTT	NA	False	NA	NA	False	NA	NA	NA	123220554	123157171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220350
transcript_42552.nic	chr14	-	2591	18	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_16	38.2839509410142	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAGAAAAAAATATTATT	NA	False	NA	NA	False	AAAAAG	-20	NA	123220724	123157142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215579_123215699_123220583
transcript_4256.known	chr1	-	4355	16	FSM	ENSMUSG00000026355.12	ENSMUST00000190495.2	4355	16	0	0	0	0	multi-exon	FALSE	canonical	3	2842	junction_5	205.687940552889	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTCTGTTGGATTCAT	NA	False	NA	-24	True	AATAAA	-14	NA	128287384	128259329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
transcript_42562.known	chr14	-	2237	14	FSM	ENSMUSG00000041594.19	ENSMUST00000135917.8	2237	14	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_9	13.9262639786257	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACAAACCTGTAACTTA	NA	False	NA	NA	False	AATAGA	-12	NA	123220652	123169896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
transcript_42566.known	chr14	-	609	3	FSM	ENSMUSG00000041625.16	ENSMUST00000162164.2	609	3	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	16.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGGACAGTGTGCAGTGC	NA	False	NA	NA	False	NA	NA	NA	123150497	123128897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_123129229_123137887_123137945_123150276
transcript_42567.known	chr14	-	1076	3	FSM	ENSMUSG00000041625.16	ENSMUST00000038075.12	1076	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	3	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTTGGTCCTTCTTTTG	NA	False	NA	-2	True	ATTAAA	-29	NA	123150574	123128271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_123129229_123137887_123137945_123150512
transcript_42568.known	chr14	-	524	4	FSM	ENSMUSG00000041625.16	ENSMUST00000161322.3	524	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.6131264181639	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGCTGTTGCTGTTTGG	NA	False	NA	-13	True	ATTAAA	-18	NA	123150560	123128282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr14_-_123128494_123129020_123129229_123137887_123137945_123150512
transcript_42570.known	chr15	-	798	9	FSM	ENSMUSG00000091119.3	ENSMUST00000165386.2	798	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	8.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAGCACTTAATGCATTA	8096	False	NA	NA	False	NA	NA	NA	3333008	3310108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_3310232_3310504_3310589_3312299_3312428_3319606_3319710_3321861_3321927_3323334_3323404_3327582_3327689_3330586_3330676_3332977
transcript_42573.nnic	chr15	-	720	6	NIC	ENSMUSG00000091119.3	novel	798	9	NA	NA	-35	124	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	10.2878569196893	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAATTGCATTTATTT	8061	False	NA	NA	False	AATAAA	-18	NA	3333043	3309984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_3310232_3310504_3310589_3312299_3312428_3327582_3327689_3330586_3330676_3332977
transcript_42574.known	chr15	+	2085	5	FSM	ENSMUSG00000064373.14	ENSMUST00000159216.10	2085	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	1.78535710713571	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGTGTGTCTTTATTGT	9277	False	NA	14	True	AATAAA	-19	NA	3300402	3309989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_3300535_3304142_3304359_3305048_3305262_3306638_3306757_3308583
transcript_42575.known	chr15	-	1171	9	FSM	ENSMUSG00000055737.13	ENSMUST00000110698.9	1171	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAGAATTTGTTTCCAAA	NA	False	NA	NA	False	TTTAAA	-7	NA	3612670	3357006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_3357169_3357455_3357625_3362828_3363008_3370400_3370574_3375990_3376015_3376953_3377084_3418129_3418196_3487411_3487491_3612481
transcript_42576.known	chr15	+	576	1	FSM	ENSMUSG00000115843.2	ENSMUST00000227989.2	576	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAACAAACAGAGCTATAAG	NA	False	NA	NA	False	NA	NA	NA	3959466	3960042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_3959500_3960000
transcript_42578.known	chr15	-	1565	7	FSM	ENSMUSG00000022184.9	ENSMUST00000022791.9	1565	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_6	2.40947204913349	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCATGGTCTCTCTTTT	NA	False	NA	NA	False	AAAACA	-20	NA	4009055	3994926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_3995275_3998388_3998565_4000818_4000995_4001110_4001187_4005238_4005460_4007243_4007480_4008723
transcript_42583.known	chr15	-	5076	6	FSM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_4	35.1681674245332	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTCTTACTTTCTTTT	2180	False	NA	-10	True	AATAAA	-20	NA	4025226	4011516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
transcript_42594.known	chr15	+	3527	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	16	True	AATAAA	-20	NA	4055864	4184826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
transcript_42603.known	chr15	+	556	4	FSM	ENSMUSG00000041841.9	ENSMUST00000227463.2	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_1	9620.00361515294	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTGTGGTGATCTAAG	2304	False	NA	34	True	AATAAA	-15	NA	5146182	5148157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_5146409_5146768_5146905_5147100_5147186_5148048
transcript_42604.known	chr15	+	925	3	FSM	ENSMUSG00000041841.9	ENSMUST00000227635.2	925	3	0	0	0	0	multi-exon	FALSE	canonical	3	15185	junction_2	4434.5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTGGTGATCTAAGGT	2297	False	NA	36	True	AATAAA	-17	NA	5146175	5148159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_5146905_5147100_5147186_5148048
transcript_42605.known	chr15	-	482	1	FSM	ENSMUSG00000068706.4	ENSMUST00000090488.4	482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	215	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGCCTGGGACGGAGCC	NA	False	NA	NA	False	NA	NA	NA	5150617	5150135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_5150100_5150600
transcript_42606.known	chr15	+	4618	9	FSM	ENSMUSG00000050697.10	ENSMUST00000228218.2	4618	9	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	19.5316249964001	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTACACAGTATTTCTT	NA	False	NA	11	True	AATAAA	-20	NA	5173372	5211373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_5173478_5190083_5190226_5194192_5194287_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
transcript_42613.known	chr15	+	1671	5	FSM	ENSMUSG00000022151.17	ENSMUST00000118193.8	1671	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	36.9323706252388	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215005	5247817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_5215054_5219062_5219285_5237849_5237932_5241479_5241612_5246630
transcript_42616.known	chr15	+	1832	5	FSM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	41.1430431543414	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215040	5247817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_5215250_5219062_5219285_5237849_5237932_5241479_5241612_5246630
transcript_42619.known	chr15	-	3264	3	FSM	ENSMUSG00000039942.16	ENSMUST00000047379.15	3264	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCATAGTCTCAATTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	5273668	5262879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_5264704_5271741_5272677_5273163
transcript_42620.known	chr15	-	3312	3	FSM	ENSMUSG00000039942.16	ENSMUST00000120563.2	3312	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCATAGTCTCAATTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	5273653	5262879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_5264704_5271741_5272677_5273100
transcript_42621.known	chr15	+	4663	15	FSM	ENSMUSG00000022150.17	ENSMUST00000080880.12	4663	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	4.17230910471721	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAATTTCATGTCGCTG	8114	False	NA	NA	False	AATAAA	-9	NA	6416078	6470186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6454115_6454179_6458776_6459431_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
transcript_42622.known	chr15	+	2754	14	FSM	ENSMUSG00000022150.17	ENSMUST00000110663.9	2754	14	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_9	3.86610211480894	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTGGTGATCTCTCCC	8292	False	NA	NA	False	AATAAA	-13	NA	6416256	6469109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6454115_6454179_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
transcript_42629.known	chr15	+	1211	10	FSM	ENSMUSG00000050310.10	ENSMUST00000228918.2	1211	10	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	10.5946643920535	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAATAAAAAATAAAAAAA	NA	False	NA	NA	False	AGTAAA	-5	NA	6737859	6794898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968_6789139_6793760_6793829_6794532
transcript_42630.known	chr15	+	4695	8	FSM	ENSMUSG00000050310.10	ENSMUST00000226181.2	4695	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	8.20900451346208	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAATGAATCAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	6737861	6793058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968
transcript_42633.known	chr15	+	2633	7	FSM	ENSMUSG00000050310.10	ENSMUST00000226201.2	2633	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	4.31083905212585	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAAGGGAAGATGGGC	NA	False	NA	NA	False	TTTAAA	-23	NA	6737861	6788096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941
transcript_42635.known	chr15	+	4143	20	FSM	ENSMUSG00000054263.13	ENSMUST00000067190.12	4143	20	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_15	6.67529450936089	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATGGTTATCAAACAGT	NA	False	NA	NA	False	GATAAA	-25	NA	7159039	7221224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_7159308_7183867_7184029_7186636_7186749_7188871_7189003_7194009_7194174_7196363_7196539_7198492_7198748_7202336_7202467_7202871_7203042_7205040_7205187_7206912_7207076_7207384_7207456_7208279_7208494_7211333_7211514_7214197_7214300_7215046_7215215_7216346_7216509_7217555_7217650_7219595_7219675_7220026
transcript_42639.known	chr15	-	4778	22	FSM	ENSMUSG00000042961.14	ENSMUST00000058593.10	4778	22	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.65291948575248	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCAGCCTTCTGCCTC	NA	False	NA	NA	False	AATAAA	-18	NA	7427785	7235600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_7237284_7237982_7238087_7241611_7241696_7249105_7249250_7252228_7252308_7261068_7261250_7263665_7263783_7267217_7267330_7271882_7272127_7273263_7273390_7276480_7276671_7279510_7279656_7280674_7280776_7281886_7281988_7282908_7283228_7283909_7284026_7319264_7319432_7333405_7333542_7334582_7334701_7345879_7345964_7347721_7347832_7427468
transcript_42640.known	chr15	+	279	1	FSM	ENSMUSG00000115497.2	ENSMUST00000228223.2	279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGAACGCTTCACGAATT	NA	False	NA	6	True	AGTAAA	-28	NA	7790194	7790473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_7790200_7790500
transcript_42646.known	chr15	-	2126	18	FSM	ENSMUSG00000039828.8	ENSMUST00000045766.8	2126	18	0	0	0	0	multi-exon	TRUE	canonical	3	158	junction_1	88.3053055575902	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGATTTTGTCCTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	8128675	7902542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
transcript_42650.known	chr15	-	1130	4	FSM	ENSMUSG00000039828.8	ENSMUST00000227371.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	79.3823378060608	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGCATTATTCAGCAATA	NA	False	NA	NA	False	NA	NA	NA	8128693	8121710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602
transcript_42655.known	chr15	+	7832	35	FSM	ENSMUSG00000022142.9	ENSMUST00000163765.3	7832	35	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_4	36.1069753346922	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGGTGTTTGTATACTA	NA	False	NA	NA	False	ATTAAA	-13	NA	8138756	8190731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_8139087_8141766_8141905_8143127_8143225_8144962_8145034_8145913_8146007_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146_8164210_8165241_8165390_8166116_8166184_8167337_8167454_8169334_8169433_8170712_8170844_8172451_8172644_8173534_8173674_8174971_8175108_8176626_8176781_8176981_8177087_8177780_8177936_8180241_8180372_8181196_8181311_8182599_8182721_8183123_8183235_8184399_8184537_8186169_8186277_8187109
transcript_42674.nic	chr15	+	3832	19	ISM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	-81	68857	-81	-305	5prime_fragment	FALSE	canonical	3	15	junction_2	6.73208642653383	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAAGGGCTCAAAATATA	NA	False	NA	NA	False	NA	NA	NA	8198508	8231785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_8198974_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677
transcript_42681.known	chr15	+	10469	53	FSM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	0	0	0	0	multi-exon	TRUE	canonical	2	15	junction_2	13.020182330866	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCCCACAGTCTGT	NA	False	NA	8	True	AATAAA	-15	NA	8198589	8300642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_8198974_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677_8231818_8232744_8232963_8233156_8233322_8239445_8239585_8241852_8241963_8242112_8242272_8243190_8243300_8245791_8246084_8247906_8248880_8250341_8250452_8251266_8251434_8251820_8251892_8252554_8252635_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
transcript_42686.nic	chr15	-	2467	10	ISM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	-202	60843	-202	-60843	5prime_fragment	FALSE	canonical	2	7	junction_6	4.39134952119322	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGTAGGTTGTCAGAAT	NA	False	NA	NA	False	AAAAAG	-39	NA	8474149	8380943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_8381296_8388123_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
transcript_42687.nic	chr15	-	1605	9	ISM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	-202	68533	-202	-68533	5prime_fragment	FALSE	canonical	2	7	junction_5	2.87228132326901	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATTAGGCAAGGATGAA	NA	False	NA	NA	False	NA	NA	NA	8474149	8388633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
transcript_42689.nnic	chr15	-	3986	11	NIC	ENSMUSG00000005360.15	novel	4163	10	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_7	19.3225257148231	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTGTATGTTATTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	8739969	8663607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_42691.known	chr15	-	4163	10	FSM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	8.52447456836295	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTGTATGTTATTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	8740248	8663607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771_8717910_8738045_8738324_8739822
transcript_42698.nnic	chr15	-	1286	5	NNC	ENSMUSG00000005360.15	novel	964	3	NA	NA	10	-14904	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	26.9953699733862	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGTGAGTGCCTCTTCT	NA	False	NA	NA	False	AATAAA	-32	NA	8740238	8686643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_8686996_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_42699.known	chr15	-	1252	5	FSM	ENSMUSG00000005360.15	ENSMUST00000153455.8	1252	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	23.8156986040721	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAATGCATAACAT	NA	False	NA	NA	False	NA	NA	NA	8739900	8710004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_8710661_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_427.known	chr1	-	3424	20	FSM	ENSMUSG00000067851.12	ENSMUST00000131556.2	3424	20	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_17	20.9399616632847	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAATGTAATGTTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	10302895	10243299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
transcript_42702.known	chr15	-	728	5	FSM	ENSMUSG00000005360.15	ENSMUST00000157065.2	728	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.3072792493137	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGACTTTCCTTTGTGGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	8739893	8715499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_8715639_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_42703.known	chr15	-	1373	2	FSM	ENSMUSG00000005360.15	ENSMUST00000133309.2	1373	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCTAAGT	NA	False	NA	NA	False	AATACA	-5	NA	8739965	8737093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_8738324_8739822
transcript_42705.known	chr15	+	4135	13	FSM	ENSMUSG00000022253.18	ENSMUST00000190591.10	4135	13	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	89.5046553724069	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATATAAATTTAGAAT	6	True	NA	NA	False	NA	NA	NA	9071339	9110979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9098897_9098964_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
transcript_42706.nic	chr15	+	3393	12	NIC	ENSMUSG00000022253.18	novel	4135	13	NA	NA	-51	304	combination_of_known_junctions	FALSE	canonical	3	231	junction_7	43.3900243705397	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTTGTTTTCTTATTTC	26	False	NA	0	True	AATAAA	-20	NA	9071288	9110252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
transcript_42712.known	chr15	+	8098	18	FSM	ENSMUSG00000039704.9	ENSMUST00000227556.3	8098	18	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_6	5.43473386468287	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTTGATTATTTATGT	32	False	NA	11	True	AATAAA	-21	NA	9140636	9202569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_9140828_9149062_9149293_9149541_9149640_9151570_9151667_9156292_9156461_9157299_9157511_9165874_9165950_9171183_9171298_9172143_9172328_9175210_9175393_9175872_9176007_9177738_9177845_9178348_9178447_9182571_9182676_9183996_9184044_9186682_9186789_9194761_9194889_9196742
transcript_42715.known	chr15	+	3210	18	FSM	ENSMUSG00000039704.9	ENSMUST00000090380.6	3210	18	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_9	7.56242761411209	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATTGCTAACACTTAAAT	147	False	NA	NA	False	AATAAA	-16	NA	9140751	9197931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_9140828_9149062_9149293_9149541_9149640_9151570_9151667_9156292_9156461_9157299_9157511_9165874_9165950_9171183_9171298_9172143_9172328_9175345_9175393_9175872_9176007_9177738_9177845_9178348_9178447_9182571_9182676_9183996_9184044_9186682_9186789_9194761_9194889_9196742
transcript_42720.known	chr15	-	3118	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_7	20.0690167197789	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTGAGCTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	9140452	9112072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
transcript_42725.known	chr15	-	1391	3	FSM	ENSMUSG00000054115.13	ENSMUST00000191316.2	1391	3	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	23	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTAAAAACCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	9140439	9127134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_9128085_9139518_9139791_9140270
transcript_42726.known	chr15	+	949	5	FSM	ENSMUSG00000039676.5	ENSMUST00000042360.5	949	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	9.67923034130297	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCCTCCTTTGAAGCT	-3	True	NA	9	True	AATAAA	-22	NA	9436113	9466124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9462676_9462887_9465840
transcript_42727.known	chr15	-	1639	10	FSM	ENSMUSG00000072663.13	ENSMUST00000162780.8	1639	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	3.74495545474505	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATTTTATTTAAC	NA	False	NA	NA	False	AATAAA	-20	NA	9748906	9704394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_9704628_9713186_9713375_9716417_9716607_9717536_9717724_9723679_9723745_9725200_9725342_9727496_9727668_9729702_9729956_9740597_9740701_9748797
transcript_42728.known	chr15	-	1422	9	FSM	ENSMUSG00000072663.13	ENSMUST00000159368.2	1422	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3.23795846174715	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGTGGCATTTTATTT	-20	True	NA	NA	False	AATAAA	-17	NA	9748863	9704397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_9704628_9713186_9713375_9716417_9716607_9717536_9717724_9723679_9723745_9725200_9725342_9729702_9729956_9740597_9740701_9748797
transcript_42729.known	chr15	-	2060	12	FSM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	0	0	0	0	multi-exon	TRUE	canonical	3	660	junction_1	60.8163473021321	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGCTTCAGTGATTTA	-35	True	NA	-15	True	ATTAAA	-23	NA	10470602	10446841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
transcript_42733.nic	chr15	-	1331	8	ISM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	-33	5449	-33	410	5prime_fragment	FALSE	canonical	3	806	junction_5	18.3992014023679	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTCACAGTACTAAATTC	NA	False	NA	NA	False	NA	NA	NA	10470635	10452290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
transcript_42735.nic	chr15	-	759	5	ISM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	-33	14536	-33	-8677	5prime_fragment	FALSE	canonical	3	806	junction_2	8.20060973342836	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCGAGACAGAGCAAGGAAA	NA	False	NA	-15	True	AAAAAG	-13	NA	10470635	10461377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
transcript_42738.known	chr15	-	2664	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	0	0	0	0	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	1116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAAGGCTTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	10486033	10474864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
transcript_42744.nnic	chr15	+	1444	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	-6	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	324.625639091486	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	-2	True	NA	15	True	AATAAA	-20	NA	10486097	10493763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
transcript_42747.nnic	chr15	+	1235	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	358.631658762395	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	1	True	NA	15	True	AATAAA	-20	NA	10486100	10493763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_10486162_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
transcript_42749.known	chr15	+	1514	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_1	183.88039590995	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTACTGTCCTGTGTCTTT	4	True	NA	27	True	AATAAA	-32	NA	10486103	10493775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
transcript_42753.nnic	chr15	+	1612	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	-3	3	intron_retention	FALSE	canonical	0	0	junction_5	316.528039832177	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	1	True	NA	15	True	AATAAA	-20	NA	10486100	10493763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
transcript_42757.nic	chr15	+	1690	5	NIC	ENSMUSG00000022248.15	novel	1073	5	NA	NA	-3	0	intron_retention	FALSE	canonical	3	683	junction_1	74.1598779664584	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATCCGACTTACTGTA	1	True	NA	12	True	AATAAA	-17	NA	10486100	10493760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
transcript_42762.known	chr15	-	4759	18	FSM	ENSMUSG00000022246.15	ENSMUST00000169385.3	4759	18	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_8	29.2639816641101	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGTGGTGTTTGTGA	8897	False	NA	-3	True	AATAAA	-26	NA	10714653	10569054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344_10589432_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
transcript_42765.nic	chr15	-	4923	17	NIC	ENSMUSG00000022246.15	novel	4759	18	NA	NA	-194	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	36.5957114119947	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGTGGTGTTTGTGA	8646	False	NA	-3	True	AATAAA	-26	NA	10714904	10569054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
transcript_42769.nnic	chr15	-	4836	16	NIC	ENSMUSG00000022246.15	novel	4759	18	NA	NA	-194	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	41.6628798279182	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGTGGTGTTTGTGA	8646	False	NA	-3	True	AATAAA	-26	NA	10714904	10569054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
transcript_42783.known	chr15	+	2577	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAATCACCAATGCCAC	49	False	NA	NA	False	AATAAA	-17	NA	10981841	10996712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
transcript_42785.known	chr15	+	8579	24	FSM	ENSMUSG00000047497.11	ENSMUST00000061318.9	8579	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATGTTTTCTTGTGCTTC	24	False	NA	NA	False	AATAAA	-13	NA	11064894	11349317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_11065244_11071584_11071953_11152006_11152158_11215626_11215824_11217887_11217972_11237619_11237745_11241481_11241632_11255634_11255779_11256994_11257140_11258181_11258275_11259041_11259188_11263369_11263540_11270646_11270781_11277421_11277543_11285947_11286193_11286796_11286936_11292095_11292223_11299980_11300192_11310621_11311732_11317288_11317442_11327764_11327945_11331803_11331948_11336380_11336541_11345584
transcript_42792.known	chr15	-	4005	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	0	0	0	0	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	2132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTGACTCCAGAGCACA	NA	False	NA	NA	False	AATAAA	-27	NA	11399751	11382386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
transcript_42831.nic	chr15	-	803	6	ISM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	-55	9999	-55	-1088	5prime_fragment	FALSE	canonical	3	2948	junction_1	128.953635078659	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCATTAAAGAGAAACAAACT	NA	False	NA	NA	False	AAGAAA	-2	NA	11399806	11392385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
transcript_42837.known	chr15	-	2437	8	FSM	ENSMUSG00000022206.8	ENSMUST00000228603.2	2437	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	6.17433793856409	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAGGAGGTGTGTGACAA	1445	False	NA	NA	False	ATTAAA	-22	NA	11905760	11844468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_11845375_11846383_11846469_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11904971
transcript_42842.known	chr15	-	6892	8	FSM	ENSMUSG00000022206.8	ENSMUST00000066529.5	6892	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	7.24498419034627	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTCCTGTCTATAATTC	1480	False	NA	-1	True	ATTAAA	-18	NA	11905725	11839981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_11845375_11846383_11846472_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11904971
transcript_42847.known	chr15	-	1969	9	FSM	ENSMUSG00000022206.8	ENSMUST00000228489.2	1969	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	12.6491106406735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAGGAGGTGTGTGACAA	NA	False	NA	NA	False	ATTAAA	-22	NA	11907373	11844468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_11845375_11846383_11846469_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11906699_11906804_11907156
transcript_42850.known	chr15	-	3372	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	0	0	0	0	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	1709	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCTTTGTGTTATCCCA	809	False	NA	NA	False	AATAAA	-11	NA	11996144	11981424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
transcript_42857.known	chr15	+	4850	20	FSM	ENSMUSG00000022201.17	ENSMUST00000122941.8	4850	20	0	0	0	0	multi-exon	FALSE	canonical	1	184	junction_8	102.146464828737	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTGTCTATATTATCTG	40	False	NA	NA	False	AATACA	-17	NA	12117916	12185769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
transcript_42868.nic	chr15	+	2015	11	ISM	ENSMUSG00000022201.17	ENSMUST00000122941.8	4850	20	-44	29363	-44	6770	5prime_fragment	TRUE	canonical	1	184	junction_8	135.393094358612	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTCAAGAAGAGAAAATGAGA	-4	True	NA	NA	False	NA	NA	NA	12117872	12156406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348
transcript_42870.known	chr15	+	1115	7	FSM	ENSMUSG00000022201.17	ENSMUST00000128475.9	1115	7	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_4	46.1483116339771	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAGAAACATAAAAAAAAGG	60	False	NA	NA	False	TATAAA	-15	NA	12117936	12149636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613
transcript_42871.nic	chr15	+	1091	7	NIC	ENSMUSG00000022201.17	novel	1115	7	NA	NA	-33	99	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	282.17705237827	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACTGAAACCAAAACAGCC	7	True	NA	NA	False	AATAAA	-1	NA	12117883	12146401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_12118034_12118324_12118428_12135352_12135377_12136481_12136765_12137990_12138136_12140519_12140739_12146234
transcript_42872.nic	chr15	+	1062	6	ISM	ENSMUSG00000022201.17	ENSMUST00000128475.9	1115	7	-51	3235	-31	99	5prime_fragment	FALSE	canonical	3	539	junction_4	43.3755691605309	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACTGAAACCAAAACAGCC	9	True	NA	NA	False	AATAAA	-1	NA	12117885	12146401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234
transcript_42873.known	chr15	+	513	3	FSM	ENSMUSG00000022201.17	ENSMUST00000124621.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	305.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTTCCTAGCTGTAA	75	False	NA	NA	False	ACTAAA	-25	NA	12117951	12122423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_12118034_12118324_12118425_12122092
transcript_42876.known	chr15	+	4359	16	FSM	ENSMUSG00000039458.16	ENSMUST00000174418.8	4359	16	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_5	54.8326747680817	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTATTAGACTGAGTCAG	48	False	NA	NA	False	ATTAAA	-21	NA	12205189	12272205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236207_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692_12266855_12269587
transcript_42879.known	chr15	+	4489	16	FSM	ENSMUSG00000039458.16	ENSMUST00000174160.3	4489	16	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_14	70.217629948294	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTTGGTGTGCACGGT	62	False	NA	9	True	ATTAAA	-20	NA	12205203	12272326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236235_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266697_12266855_12269587
transcript_4288.known	chr1	-	2175	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	0	0	0	0	multi-exon	TRUE	canonical	3	1712	junction_8	135.919976456737	2677	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	-4	True	AATAAA	-14	NA	128345096	128291443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
transcript_42886.nic	chr15	+	2349	15	ISM	ENSMUSG00000039458.16	ENSMUST00000038172.16	6840	16	-117	7341	-117	-4839	5prime_fragment	FALSE	canonical	3	174	junction_5	32.4575861388241	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCATCTGTATTTTAT	NA	False	NA	NA	False	AATAAA	-14	NA	12204996	12267241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236235_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692
transcript_42893.known	chr15	+	2652	4	FSM	ENSMUSG00000022200.9	ENSMUST00000059680.7	2652	4	0	0	0	0	multi-exon	TRUE	canonical	3	392	junction_2	32.4174164437712	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAGAGCAAGCATGCCAT	-5	True	NA	18	True	AATAAA	-26	NA	12321535	12351351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_12322043_12339713_12339846_12343122_12343238_12349453
transcript_42899.known	chr15	-	3966	9	FSM	ENSMUSG00000022195.8	ENSMUST00000057256.5	3966	9	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_8	28.8809517675578	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAACAAAAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	12824735	12808262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
transcript_429.nic	chr1	-	3275	17	ISM	ENSMUSG00000067851.12	ENSMUST00000131556.2	3424	20	-464	7849	-464	-7849	5prime_fragment	FALSE	canonical	3	88	junction_14	18.509710289467	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATCAATGAAAGAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	10303359	10251148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
transcript_42905.known	chr15	-	3156	8	FSM	ENSMUSG00000022195.8	ENSMUST00000228177.2	3156	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	133.553321920192	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAAATTAAATCCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	12824697	12808731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818214_12821489_12821640_12824552
transcript_42906.known	chr15	-	3206	8	FSM	ENSMUSG00000022195.8	ENSMUST00000227299.2	3206	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	97.0238767163074	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCTGATAATCAAAAGATT	NA	False	NA	-12	True	AATAAA	-19	NA	12824716	12808857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12824552
transcript_42914.nnic	chr15	-	3530	7	NIC	ENSMUSG00000022195.8	novel	3206	8	NA	NA	-16	230	combination_of_known_splicesites	FALSE	canonical	3	13	junction_2	140.23512002665	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTTTTAATTTTTTAT	NA	False	NA	-10	True	AATAAA	-13	NA	12824751	12808501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_12810931_12812018_12812159_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12824552
transcript_42918.known	chr15	-	1971	3	FSM	ENSMUSG00000022195.8	ENSMUST00000228888.2	1971	3	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_2	25	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAGAAAAGGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	12824727	12819989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_12821640_12823646_12823793_12824552
transcript_42920.nic	chr15	-	746	2	ISM	ENSMUSG00000022195.8	ENSMUST00000227299.2	3206	8	-35	12235	-16	-1103	5prime_fragment	FALSE	canonical	3	60	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAGCTTACGTGGGAGTT	NA	False	NA	NA	False	NA	NA	NA	12824751	12821092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_12821640_12824552
transcript_42923.nnic	chr15	+	4731	36	NNC	ENSMUSG00000022191.17	novel	4570	35	NA	NA	-31	0	intron_retention	FALSE	canonical	3	44	junction_3	169.480343812418	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTTTGCTACAGAGTA	7	True	NA	29	True	ATTAAA	-19	NA	12824869	12935376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_12825025_12826150_12826254_12827312_12827379_12830388_12830523_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
transcript_42933.known	chr15	+	4519	35	FSM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_3	95.4793814587056	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCTTTGCTACAGAGTAT	53	False	NA	30	True	ATTAAA	-20	NA	12824948	12935377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
transcript_42938.nnic	chr15	+	4315	33	NNC	ENSMUSG00000022191.17	novel	3248	20	NA	NA	-3778	0	intron_retention	FALSE	canonical	3	27	junction_1	142.947648716016	79	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTTTGCTACAGAGTA	45	False	NA	29	True	ATTAAA	-19	NA	12833657	12935376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_12833700_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
transcript_42943.nic	chr15	+	3124	21	ISM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	-79	45120	-31	4941	5prime_fragment	FALSE	canonical	3	495	junction_3	66.3434058516745	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGTTTGGGTGACAGTA	7	True	NA	NA	False	NA	NA	NA	12824869	12890257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119
transcript_42945.known	chr15	+	3176	12	FSM	ENSMUSG00000022321.16	ENSMUST00000166873.9	3176	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.616575453011388	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTCTAGCTTCTCTT	75	False	NA	NA	False	AATAAA	-17	NA	18819032	19014322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_18819174_18899560_18899906_18964070_18964366_18966042_18966163_18966827_18966996_18985151_18985340_18986772_18987027_18991998_18992136_18999949_19000072_19007637_19007747_19010942_19011195_19013277
transcript_42949.known	chr15	-	1855	2	FSM	ENSMUSG00000045763.9	ENSMUST00000058845.9	1855	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGGCTTTTGGCTTGA	NA	False	NA	NA	False	AATAAA	-20	NA	25413850	25363362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_25365005_25413637
transcript_42950.known	chr15	+	8125	41	FSM	ENSMUSG00000022272.18	ENSMUST00000110457.8	8125	41	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	332.593497192895	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGCTTTCCTTGAGTAG	37	False	NA	16	True	AATAAA	-17	NA	25622610	25813759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_25623117_25666511_25666611_25701647_25701807_25714114_25714303_25722255_25722391_25723969_25724095_25725157_25725172_25725281_25725367_25726505_25726610_25732055_25732186_25734073_25734193_25736031_25736179_25736486_25736588_25736680_25736748_25737535_25737629_25738042_25738112_25739372_25739456_25742426_25742536_25744261_25744343_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
transcript_42958.nic	chr15	+	6187	23	NIC	ENSMUSG00000022272.18	novel	5880	21	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	149.870088371328	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGCTTTCCTTGAGT	50	False	NA	14	True	AATAAA	-15	NA	25752928	25813757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_25753407_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
transcript_42963.nnic	chr15	+	6048	23	NNC	ENSMUSG00000022272.18	novel	618	2	NA	NA	-2739	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	160.492913259781	94	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGCTTTCCTTGAGT	866	False	NA	14	True	AATAAA	-15	NA	25756111	25813757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_25756451_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
transcript_42965.nic	chr15	+	6114	23	NIC	ENSMUSG00000022272.18	novel	748	4	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	157.493040643832	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGCTTTCCTTGAGT	46	False	NA	14	True	AATAAA	-15	NA	25758832	25813757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_25759238_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
transcript_42967.nic	chr15	+	4830	23	NIC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	14	-1187	combination_of_known_junctions	FALSE	canonical	3	400	junction_1	95.5578769711826	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGAGAAAACCACACGGCC	4	True	NA	NA	False	AAAAAG	-4	NA	25774086	25812570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
transcript_42968.nic	chr15	+	6017	23	NIC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	400	junction_1	95.5578769711826	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGCTTTCCTTGAGT	4	True	NA	14	True	AATAAA	-15	NA	25774086	25813757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
transcript_42971.known	chr15	+	2826	22	FSM	ENSMUSG00000022272.18	ENSMUST00000137601.8	2826	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	212.553442659475	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAGAGGCGGGAGGAA	55	False	NA	-6	True	NA	NA	NA	25622628	25779850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_25623117_25701647_25701807_25714114_25714303_25722255_25722391_25723969_25724095_25725157_25725172_25725281_25725367_25726505_25726610_25732055_25732186_25734073_25734193_25736031_25736179_25736486_25736588_25736680_25736748_25737535_25737629_25738042_25738112_25739372_25739456_25742426_25742536_25744261_25744343_25776106_25776232_25776403_25776519_25778166_25778274_25779668
transcript_42992.known	chr15	+	881	5	FSM	ENSMUSG00000022272.18	ENSMUST00000135173.8	881	5	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	256.595498791386	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGGGAGGAAGAGAAGAAGA	186	False	NA	4	True	NA	NA	NA	25753064	25779860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_25753407_25776106_25776232_25776403_25776519_25778166_25778274_25779668
transcript_42994.nnic	chr15	+	878	5	NNC	ENSMUSG00000022272.18	novel	8125	41	NA	NA	-2739	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	280.824122005215	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGGGAGGAAGAGAAGAAGA	866	False	NA	4	True	NA	NA	NA	25756111	25779860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_25756451_25776106_25776232_25776403_25776519_25778166_25778274_25779668
transcript_42995.nic	chr15	+	944	5	NIC	ENSMUSG00000022272.18	novel	748	4	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	274.014940286109	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGGGAGGAAGAGAAGAAGA	46	False	NA	4	True	NA	NA	NA	25758832	25779860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_25759238_25776106_25776232_25776403_25776519_25778166_25778274_25779668
transcript_42997.known	chr15	+	1030	7	FSM	ENSMUSG00000022272.18	ENSMUST00000125667.3	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	101.286173236473	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGGAGAACAAGCAGGT	-10	True	NA	NA	False	NA	NA	NA	25774072	25781143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059
transcript_43.known	ERCC-00130	+	1051	1	FSM	ERCC-00130A	EF011072	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13607	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00130_+_0_1100
transcript_43004.known	chr15	+	3248	9	FSM	ENSMUSG00000022270.17	ENSMUST00000022881.15	3248	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	4.98591766879478	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTTATGTGTATGCC	9	False	NA	21	True	TATAAA	-17	NA	25843265	25973773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_25843699_25889566_25889674_25895198_25895230_25964309_25964437_25966718_25966804_25968492_25968631_25969881_25969947_25970183_25970311_25971638
transcript_43009.known	chr15	+	2802	6	FSM	ENSMUSG00000052253.7	ENSMUST00000061875.8	2802	6	0	0	0	0	multi-exon	TRUE	canonical	3	450	junction_2	26.9962960422351	382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCTCTTCTAGGTTTCT	27	False	NA	NA	False	ATTAAA	-19	NA	25984451	25998567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_25985270_25986883_25987133_25987246_25987410_25991538_25991652_25996191_25996336_25997252
transcript_43011.known	chr15	+	1365	3	FSM	ENSMUSG00000022269.14	ENSMUST00000152841.2	1365	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGAGGCTCCTT	102	False	NA	NA	False	AATACA	-12	NA	26309149	26409662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_26309879_26311056_26311213_26409182
transcript_43014.known	chr15	+	3498	12	FSM	ENSMUSG00000022265.8	ENSMUST00000022875.7	3498	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	12.2109556553338	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGCTATTTTCATGCT	52	False	NA	23	True	ATTAAA	-19	NA	27466762	27594995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_27467186_27544336_27544554_27553774_27553894_27557249_27557334_27562809_27562981_27564987_27565123_27567600_27567694_27571644_27571741_27590428_27590559_27591003_27591128_27591522_27591623_27593189
transcript_43019.known	chr15	-	1491	7	FSM	ENSMUSG00000046034.9	ENSMUST00000059662.8	1491	7	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	23.0771652408946	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAGTTTTGTATTTGATT	NA	False	NA	-5	True	AATGAA	-40	NA	27630779	27606004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_27606548_27608677_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27623367_27623445_27630543
transcript_43021.nic	chr15	-	1449	6	NIC	ENSMUSG00000046034.9	novel	1491	7	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_5	98.7825895590918	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAGTTTTGTATTTGATT	NA	False	NA	-5	True	AATGAA	-40	NA	27630814	27606004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_27606548_27608677_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27630543
transcript_43023.nic	chr15	-	2935	6	ISM	ENSMUSG00000046034.9	ENSMUST00000059662.8	1491	7	-40	726	-40	-726	5prime_fragment	FALSE	canonical	3	220	junction_1	25.2713276263832	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGTCCCTTTTGGATAT	NA	False	NA	NA	False	NA	NA	NA	27630819	27606730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27623367_27623445_27630543
transcript_43024.known	chr15	-	811	5	FSM	ENSMUSG00000046034.9	ENSMUST00000228439.2	811	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	108.380118102907	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAACCACCTAAACCAGGT	NA	False	NA	NA	False	NA	NA	NA	27630764	27608722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_27608948_27611597_27611724_27616409_27616554_27619614_27619710_27630543
transcript_43029.nic	chr15	+	4088	16	ISM	ENSMUSG00000022240.11	ENSMUST00000226119.2	4111	22	473643	-587	162	219	3prime_fragment	FALSE	canonical	3	23	junction_10	10.715720538847	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATCCTTGCTAAGAATGT	85	False	NA	NA	False	AATAAA	-18	NA	30646839	31028774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805_30905980_30922000_30922152_30966901_30967113_30972938_30973024_31005094_31005222_31009178_31009311_31020846_31020921_31027557
transcript_43041.known	chr15	+	1555	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1.69967317119759	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTTACGGTTCAG	-9	True	NA	21	True	AATAAA	-21	NA	31224459	31274487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
transcript_43043.known	chr15	-	7466	4	FSM	ENSMUSG00000022237.18	ENSMUST00000123325.9	7466	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.88561808316413	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGTATTTTCCTGTCAT	NA	False	NA	NA	False	AATAAA	-37	NA	31367872	31291623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_31298131_31305137_31305279_31325231_31325362_31367184
transcript_43044.known	chr15	-	2070	4	FSM	ENSMUSG00000022237.18	ENSMUST00000110410.10	2070	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.86744175568088	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGAAGGGATTCTCCCC	72	False	NA	NA	False	AATAAA	-24	NA	31367689	31296809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_31298131_31305137_31305279_31325231_31325362_31367211
transcript_43045.known	chr15	-	6260	26	FSM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	16.0775122453693	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTGGCTGTGTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	31531199	31456036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440_31478643_31480430_31480569_31482643_31482745_31482949_31483070_31485091_31485227_31486069_31486145_31486227_31486297_31486500_31486582_31488937_31488997_31490721_31490774_31492884_31492918_31494216_31494279_31496149_31496340_31498719_31498889_31501061_31501135_31502865_31503010_31505830_31505905_31509871_31509969_31530948
transcript_43049.known	chr15	+	1155	6	FSM	ENSMUSG00000022235.16	ENSMUST00000070918.14	1155	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.60768096208106	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGCGTAGCTTCACTTT	55	False	NA	NA	False	AATAAA	-18	NA	31568943	31590265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_31569086_31581985_31582220_31584110_31584219_31585440_31585584_31588313_31588406_31589829
transcript_43054.known	chr15	-	1853	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	0	0	0	0	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	1004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAGCTTGATAGAGGAT	NA	False	NA	-3	True	AATAAA	-30	NA	31601950	31590945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
transcript_43086.known	chr15	-	769	4	FSM	ENSMUSG00000022234.16	ENSMUST00000159121.2	769	4	0	0	0	0	multi-exon	FALSE	canonical	3	5907	junction_1	275.901351130355	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAATCATTTTGGGGAAG	NA	False	NA	NA	False	NA	NA	NA	31601886	31595586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_31595990_31597556_31597722_31598145_31598207_31601746
transcript_43087.known	chr15	+	2364	6	FSM	ENSMUSG00000039065.12	ENSMUST00000161061.3	2364	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.3490087672889	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTCCTGGCCTCGGGCT	115	False	NA	NA	False	ATTAAA	-26	NA	31602263	31618755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_31602296_31603594_31603721_31606056_31606335_31608241_31608380_31609711_31609763_31617016
transcript_43088.known	chr15	+	1164	5	FSM	ENSMUSG00000039065.12	ENSMUST00000042702.7	1164	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	6.68954408012983	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACCGTGACAAGGAGTG	115	False	NA	27	True	ATTAAA	-27	NA	31602263	31617681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_31602296_31606056_31606335_31608241_31608380_31609711_31609763_31617016
transcript_43089.known	chr15	+	4655	2	FSM	ENSMUSG00000039065.12	ENSMUST00000160146.2	4655	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGCGAAAAAACAAGCTCT	NA	False	NA	NA	False	NA	NA	NA	31601997	31621373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_31602296_31617016
transcript_43090.known	chr15	+	3527	5	FSM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	11.0227038425243	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTGTGTGAGTATTGCT	26	False	NA	NA	False	ATTAAA	-44	NA	32920868	33035081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_32921452_33017247_33017360_33023794_33023932_33028192_33028329_33032522
transcript_43094.known	chr15	-	4010	1	FSM	ENSMUSG00000038984.5	ENSMUST00000042021.5	4010	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTGTATTTAATATTACA	NA	False	NA	NA	False	AATAAA	-19	NA	33688030	33684020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_33684000_33688000
transcript_43095.known	chr15	+	2906	1	FSM	ENSMUSG00000115318.2	ENSMUST00000227474.2	2906	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	136	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33831593	33834499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_33831600_33834500
transcript_43098.known	chr15	+	6919	12	FSM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	0	0	0	0	multi-exon	TRUE	canonical	3	477	junction_6	48.3699585751527	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGCCTGGCTTGTGTTTT	52	False	NA	1	True	NA	NA	NA	34082864	34145770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
transcript_43110.known	chr15	+	1593	10	FSM	ENSMUSG00000022255.17	ENSMUST00000163333.9	1593	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_9	216.816757131084	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATCTTATGCACGACCT	83	False	NA	NA	False	NA	NA	NA	34083453	34141289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34131309_34131435_34134436_34134545_34136832_34136974_34140837
transcript_43112.nic	chr15	+	1701	9	ISM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	-67	11280	-42	0	5prime_fragment	FALSE	canonical	3	477	junction_6	54.812749429307	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAGAAGAAAAA	-15	True	NA	NA	False	GATAAA	-37	NA	34082797	34134490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436
transcript_43120.known	chr15	+	989	6	FSM	ENSMUSG00000022255.17	ENSMUST00000168991.8	989	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	218.724484226161	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAGAAGAAAAA	148	False	NA	NA	False	GATAAA	-37	NA	34083181	34134490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_34083560_34099629_34099732_34118025_34118257_34123813_34123913_34131309_34131435_34134436
transcript_43123.known	chr15	+	4582	2	FSM	ENSMUSG00000022255.17	ENSMUST00000172082.2	4582	2	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_1	0	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAAAAATCT	27	False	NA	NA	False	NA	NA	NA	34082839	34103491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_34083560_34099629
transcript_43124.known	chr15	+	1902	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	31	True	NA	NA	False	ATTAAA	-22	NA	34238173	34284448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
transcript_43126.known	chr15	+	3569	19	FSM	ENSMUSG00000022324.16	ENSMUST00000227759.2	3569	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.0137937550497	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAGTGTTGAGTAAAAT	55	False	NA	NA	False	ATTAAA	-15	NA	34306830	34436384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_34307055_34316636_34316802_34345136_34345707_34355708_34355832_34378800_34378924_34388869_34388993_34399195_34399319_34402980_34403104_34409898_34410022_34410259_34410383_34422487_34422611_34423839_34423963_34426308_34426432_34428579_34428994_34431617_34431771_34432825_34432898_34433178_34433314_34433632_34433732_34435877
transcript_43127.known	chr15	+	3551	19	FSM	ENSMUSG00000022324.16	ENSMUST00000022947.7	3551	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.03040205505508	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTAGGGGCCATGCTATTT	51	False	NA	NA	False	AGTAAA	-18	NA	34306826	34436419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_34307055_34316636_34316802_34345136_34345707_34355708_34355832_34378800_34378924_34388869_34388993_34399195_34399319_34402980_34403104_34409898_34410022_34410259_34410383_34422487_34422611_34423839_34423963_34426308_34426432_34428579_34428994_34431617_34431771_34432825_34432898_34433235_34433314_34433632_34433732_34435877
transcript_43128.known	chr15	-	886	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	NA	False	NA	-20	True	AATAAA	-27	NA	34443786	34440650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
transcript_43130.known	chr15	-	570	4	FSM	ENSMUSG00000058600.14	ENSMUST00000009039.6	570	4	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	558.07426825548	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	361	False	NA	-25	True	AATAAA	-22	NA	34443368	34440655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170
transcript_43132.known	chr15	-	505	3	FSM	ENSMUSG00000058600.14	ENSMUST00000142643.2	505	3	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	417	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	675	False	NA	-20	True	AATAAA	-27	NA	34443054	34440650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_34440751_34441377_34441509_34442780
transcript_43133.known	chr15	-	1004	6	FSM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	17.7245592328836	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTTTAATTTTGTTC	NA	False	NA	-10	True	AATAAA	-21	NA	34495401	34484166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_34484682_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
transcript_43134.known	chr15	+	3275	16	FSM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	10.1552394796425	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATGTGGATGATGATTT	94	False	NA	-2	True	ATTAAA	-8	NA	34495468	34530783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_34495562_34499434_34499579_34502456_34502625_34505104_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
transcript_43136.nic	chr15	+	676	5	ISM	ENSMUSG00000022325.15	ENSMUST00000052290.14	3395	17	-31	24185	-31	-5729	5prime_fragment	FALSE	canonical	3	39	junction_3	7.63216876123687	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCACAAAGCCCGAAGATG	44	False	NA	NA	False	AATAAA	-1	NA	34495418	34506609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_34495562_34499434_34499579_34502456_34502625_34505104_34505281_34506564
transcript_43137.known	chr15	-	4331	11	FSM	ENSMUSG00000038879.9	ENSMUST00000040791.9	4331	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2.40831891575846	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGCAAAGATTCAGAATGT	NA	False	NA	NA	False	AATAAA	-15	NA	34679358	34572944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_34575718_34577715_34577811_34578853_34578918_34582866_34582956_34584775_34584912_34600160_34600258_34609318_34609441_34625117_34625178_34648811_34648984_34650527_34650597_34678704
transcript_4314.known	chr1	-	378	1	FSM	ENSMUSG00000094122.2	ENSMUST00000086596.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTACTCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	129729501	129729123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_129729100_129729500
transcript_43144.known	chr15	-	2914	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCGTTGTTGTTATTGT	NA	False	NA	2	True	AATAAA	-21	NA	35155952	34875641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
transcript_43149.known	chr15	-	2471	9	FSM	ENSMUSG00000022329.16	ENSMUST00000067033.8	2471	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.4851500278157	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAGTATTAGAAAAAGAC	NA	False	NA	NA	False	ACTAAA	-33	NA	35155896	34875818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35155672
transcript_4315.nic	chr1	-	2780	10	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	18.9912260443255	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390256	130366763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
transcript_43157.nic	chr15	+	1853	4	NIC	ENSMUSG00000022330.6	novel	1724	4	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	14.8548533034381	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCTTGAGATTCATC	69	False	NA	12	True	AATAAA	-15	NA	35296195	35303450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_35296614_35300334_35301102_35302057_35302158_35302882
transcript_43158.known	chr15	+	1724	4	FSM	ENSMUSG00000022330.6	ENSMUST00000022952.6	1724	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	10.1434160364686	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCTTGAGATTCATCT	117	False	NA	13	True	AATAAA	-16	NA	35296243	35303451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_35296614_35300334_35301102_35302057_35302158_35302964
transcript_43159.known	chr15	+	579	3	FSM	ENSMUSG00000022330.6	ENSMUST00000228684.2	579	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGGCCCCGGCTCCCTTCC	130	False	NA	NA	False	NA	NA	NA	35296256	35303086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_35296614_35302057_35302158_35302964
transcript_4316.known	chr1	-	2533	10	FSM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	13.0705587551887	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390481	130366763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
transcript_43167.nnic	chr15	+	3152	20	NNC	ENSMUSG00000037646.11	novel	4568	29	NA	NA	-3	-73075	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_19	14.5875900659951	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGAAGAAGAAGAAGAAGAAG	123	False	NA	NA	False	NA	NA	NA	35371668	35570023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_35371924_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35569975
transcript_4317.nnic	chr1	-	2699	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-68	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	25.6855990780826	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390256	130366763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_130368117_130375355_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
transcript_43174.known	chr15	+	13757	62	FSM	ENSMUSG00000037646.11	ENSMUST00000048646.9	13757	62	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_44	12.5602231076886	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTGTGCTGTGAGTTT	-26	True	NA	NA	False	AATAAA	-28	NA	35371305	35931375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_35371924_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35572205_35572316_35576524_35576673_35597540_35597669_35607275_35607511_35617743_35617965_35623747_35623952_35639998_35640171_35640675_35640791_35642543_35642611_35646118_35646528_35652400_35652513_35668846_35669051_35671444_35671572_35674954_35675099_35709271_35709960_35745792_35745931_35770601_35771010_35792184_35792388_35793979_35794185_35794450_35794636_35834329_35834527_35840020_35840203_35841394_35841745_35846991_35847154_35869432_35869589_35875707_35875972_35876525_35876610_35876787_35876964_35877642_35877814_35878788_35878991_35879914_35880104_35883034_35883182_35884652_35884937_35887022_35887151_35887328_35887529_35905417_35905537_35910292_35911096_35914919_35915097_35917192_35917364_35923332_35923510_35925449_35925553_35926186_35926437_35930000
transcript_43178.known	chr15	-	606	4	FSM	ENSMUSG00000014313.16	ENSMUST00000156915.3	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_3	4177.00884472237	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGTAATTATATGGACA	39	False	NA	-25	True	NA	NA	NA	35938155	35932145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35937906
transcript_43179.known	chr15	-	503	4	FSM	ENSMUSG00000014313.16	ENSMUST00000014457.15	503	4	0	0	0	0	multi-exon	FALSE	canonical	3	8539	junction_3	472.446822404384	2118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTTGGTTATTAAT	NA	False	NA	-1	True	AATAAA	-22	NA	35938392	35932121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35938270
transcript_4318.nnic	chr1	-	2721	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-269	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	21.5982493503525	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390750	130366763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_130368117_130375355_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
transcript_43183.known	chr15	-	3038	2	FSM	ENSMUSG00000014313.16	ENSMUST00000127999.2	3038	2	0	0	0	0	multi-exon	FALSE	canonical	3	8821	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTAAGTCTTTGCTTGGT	NA	False	NA	-8	True	AATAAA	-15	NA	35938353	35932128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_35932244_35935430
transcript_43186.known	chr15	+	489	4	FSM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	234.864973028239	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATTTCTATTCAATGT	109	False	NA	NA	False	ATTAAA	-12	NA	36174155	36177153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_36174228_36175132_36175203_36175529_36175623_36176899
transcript_43188.known	chr15	+	601	4	FSM	ENSMUSG00000045996.13	ENSMUST00000057177.7	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	282.916948944385	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCTATTCAATGTCTT	132	False	NA	NA	False	ATTAAA	-15	NA	36174178	36177156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_36174360_36175132_36175203_36175529_36175623_36176899
transcript_43191.nnic	chr15	+	3059	19	NNC	ENSMUSG00000037617.13	novel	3646	19	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	18.4173998513349	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTGGTGGCAGTTCT	120	False	NA	NA	False	ATTAAA	-14	NA	36179451	36235323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_36179524_36181841_36181990_36183802_36183963_36186752_36186879_36190617_36190683_36191271_36191382_36192149_36192256_36195521_36195653_36197883_36197991_36200347_36200508_36210688_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
transcript_43193.nnic	chr15	+	3503	19	NNC	ENSMUSG00000037617.13	novel	3646	19	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	18.4173998513349	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCCTGCGTGTCTGTAT	120	False	NA	NA	False	AATAAA	-25	NA	36179451	36235767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_36179524_36181841_36181990_36183802_36183963_36186752_36186879_36190617_36190683_36191271_36191382_36192149_36192256_36195521_36195653_36197883_36197991_36200347_36200508_36210688_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
transcript_43194.known	chr15	+	3646	19	FSM	ENSMUSG00000037617.13	ENSMUST00000047348.11	3646	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	18.7185950987016	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCCTGCGTGTCTGTAT	182	False	NA	NA	False	AATAAA	-25	NA	36179513	36235767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_36179729_36181841_36181990_36183802_36183963_36186752_36186879_36190617_36190683_36191271_36191382_36192149_36192256_36195521_36195653_36197883_36197991_36200347_36200508_36210688_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
transcript_43196.known	chr15	+	2388	9	FSM	ENSMUSG00000037617.13	ENSMUST00000227582.2	2388	9	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	7	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACTGTGAGTATGCCTG	72	False	NA	NA	False	AATAAA	-14	NA	36210607	36235756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
transcript_43200.known	chr15	-	4277	10	FSM	ENSMUSG00000022280.10	ENSMUST00000022890.10	4277	10	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	15.6946165182307	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTGTGCCCAGGAAT	NA	False	NA	1	True	AATAAA	-17	NA	36283293	36240078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_36242212_36244232_36244377_36245561_36245776_36247267_36247430_36247896_36248012_36253146_36253310_36254528_36254674_36260160_36260370_36265421_36266178_36283057
transcript_43206.known	chr15	-	2509	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	459	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATCGGCCATTTTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	36496966	36477813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
transcript_43210.known	chr15	-	2344	14	FSM	ENSMUSG00000013611.15	ENSMUST00000161202.8	2344	14	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_13	9.09385643454255	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGATGAATACAGAGTTTG	NA	False	NA	NA	False	AATAAA	-8	NA	36555713	36504557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_36505620_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36555592
transcript_43211.known	chr15	-	2696	14	FSM	ENSMUSG00000013611.15	ENSMUST00000013755.12	2696	14	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_13	8.19438399112971	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTGTTTCAATTTGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	36555718	36504207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_36505617_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36555592
transcript_43212.nnic	chr15	-	2147	14	NNC	ENSMUSG00000013611.15	novel	2696	14	NA	NA	-4607	-243	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	6.43492688565058	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCATCTCGCCAATTTGA	NA	False	NA	NA	False	NA	NA	NA	36560325	36504800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_36505617_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36560155
transcript_43232.known	chr15	-	2817	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	0	0	0	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	2210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	377	False	NA	-7	True	AATAAA	-16	NA	36609217	36595904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
transcript_4326.known	chr1	-	2849	15	FSM	ENSMUSG00000026409.15	ENSMUST00000169659.8	2849	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	4.50679758695639	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTGGAATAATTTCCTA	3955	False	NA	NA	False	AGTAAA	-22	NA	130643515	130624407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_130625823_130626415_130626481_130626924_130626988_130627717_130627848_130628506_130628612_130629441_130629589_130629967_130630176_130633113_130633239_130634162_130634220_130634579_130634655_130634788_130634856_130635245_130635343_130635812_130635939_130642202_130642314_130643457
transcript_4329.known	chr1	+	2909	4	FSM	ENSMUSG00000042510.8	ENSMUST00000039323.8	2909	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.63299316185545	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCCCTGTTCTTC	NA	False	NA	NA	False	AATAAA	-19	NA	130659712	130672359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_130659961_130665238_130665425_130668739_130668921_130670065
transcript_4330.nnic	chr1	-	2900	11	NNC	ENSMUSG00000016528.11	novel	2854	10	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	48.6994866502718	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCATTCTTTTTCTTC	NA	False	NA	-14	True	ACTAAA	-19	NA	131025575	130981436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_130982973_130983495_130983577_130983665_130983752_130984150_130984276_130984625_130984702_130985230_130985358_130985737_130985818_130986088_130986154_130986359_130986500_130990244_130990279_131025025
transcript_4332.known	chr1	-	2854	10	FSM	ENSMUSG00000016528.11	ENSMUST00000016672.11	2854	10	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	17.0105268787113	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCATTCTTTTTCTTC	NA	False	NA	-14	True	ACTAAA	-19	NA	131025563	130981436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_130982973_130983495_130983577_130983665_130983752_130984150_130984276_130984625_130984702_130985230_130985358_130985737_130985818_130986088_130986154_130986359_130986500_131025025
transcript_43324.known	chr15	-	2916	3	FSM	ENSMUSG00000022283.16	ENSMUST00000146327.2	2916	3	0	0	0	0	multi-exon	FALSE	canonical	3	5117	junction_1	52.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACTA	377	False	NA	NA	False	NA	NA	NA	36609217	36603739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_36605802_36605987_36606182_36608557
transcript_43327.known	chr15	-	3288	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	1118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	NA	False	NA	-39	True	NA	NA	NA	36794782	36771013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
transcript_43334.known	chr15	-	2285	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAACCGCT	NA	False	NA	NA	False	NA	NA	NA	36794775	36771812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
transcript_4335.known	chr1	-	3164	3	FSM	ENSMUSG00000016526.9	ENSMUST00000016670.9	3164	3	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	9	783	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCATGCATCCTTTC	237	False	NA	NA	False	AATAAA	-25	NA	131066077	131055191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_131057983_131063996_131064109_131065816
transcript_43352.known	chr15	-	2122	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	0	0	0	0	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAACTACTTTTCTCT	440	False	NA	-12	True	NA	NA	NA	36794081	36771947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
transcript_43368.known	chr15	-	517	4	FSM	ENSMUSG00000062397.9	ENSMUST00000226453.2	517	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	3120.35097740979	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCCTTTGGGCTTCATGC	542	False	NA	11	True	AATAAA	-30	NA	37007259	37001042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007112
transcript_43369.known	chr15	-	4417	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	0	0	0	0	multi-exon	TRUE	canonical	3	6501	junction_2	212.49836600679	1938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTCTGTGGTGTTC	155	False	NA	NA	False	NA	NA	NA	37007646	36997270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
transcript_4338.known	chr1	+	2153	15	FSM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_14	169.094301066184	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTTTGTGTCTTATTT	NA	False	NA	NA	False	AGTAAA	-24	NA	131080917	131099976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131099657
transcript_43380.nnic	chr15	+	3214	3	NNC	ENSMUSG00000022286.17	novel	3617	9	NA	NA	11907	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	32.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTCAAACAGCTCTCTAG	122	False	NA	11	True	AATAAA	-12	NA	37347887	37363804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_37348099_37358613_37358679_37360866
transcript_43381.nic	chr15	+	3109	3	ISM	ENSMUSG00000022286.17	ENSMUST00000161933.2	3617	9	29241	-7	11907	0	3prime_fragment	FALSE	canonical	3	68	junction_1	5	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCTCTAGTACTTTCTG	122	False	NA	20	True	AATAAA	-21	NA	37347887	37363813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_37348099_37358613_37358679_37360980
transcript_43383.known	chr15	+	4947	16	FSM	ENSMUSG00000022286.17	ENSMUST00000022895.15	4947	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	24.3507700083591	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCTCTAGTACTTTCTG	193	False	NA	20	True	AATAAA	-21	NA	37233279	37363813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_37233651_37270833_37271030_37274886_37274955_37279577_37279972_37287485_37287542_37288431_37288589_37291804_37291917_37309908_37310004_37328473_37328633_37335945_37336034_37336449_37336590_37338016_37338049_37344896_37344992_37348012_37348099_37358613_37358679_37360980
transcript_43384.known	chr15	-	4561	9	FSM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	8.71779788708135	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTAGTTATATCATTTT	7108	False	NA	NA	False	AATAAA	-16	NA	37961347	37924195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_37927642_37929281_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
transcript_43386.nic	chr15	-	1975	5	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	34	19299	34	1797	5prime_fragment	FALSE	canonical	3	46	junction_2	5.71729831301464	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTGGGAACAAAACACCC	7142	False	NA	NA	False	AATATA	-42	NA	37961313	37943494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
transcript_43387.known	chr15	-	466	1	FSM	ENSMUSG00000085442.2	ENSMUST00000148102.2	466	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAACTGAGTCCAGATGG	NA	False	NA	NA	False	NA	NA	NA	37944036	37943570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_37943600_37944000
transcript_4339.known	chr1	+	2009	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080917	131101215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
transcript_434.nic	chr1	-	2732	13	ISM	ENSMUSG00000067851.12	ENSMUST00000131556.2	3424	20	-464	15704	-464	-15704	5prime_fragment	FALSE	canonical	3	88	junction_10	9.03234926989282	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGAACAAGGGATTGAT	NA	False	NA	NA	False	AAAAAG	-4	NA	10303359	10259003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_10259184_10259451_10259561_10259663_10259904_10264481_10264717_10269067_10269202_10269953_10270130_10275032_10275135_10279649_10279927_10283268_10283449_10284349_10284497_10286061_10286219_10286753_10286785_10302595
transcript_43402.known	chr15	-	3044	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	0	0	0	0	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	3563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	-7	True	AATAAA	-18	NA	38300950	38294656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
transcript_43405.known	chr15	-	2144	5	FSM	ENSMUSG00000037465.11	ENSMUST00000227920.2	2144	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	972.418891219211	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACACACAGAGCTCAGA	NA	False	NA	NA	False	AATAAA	-21	NA	38300950	38291706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_38292469_38296318_38296409_38296858_38297772_38297865_38298097_38300802
transcript_43407.known	chr15	-	4217	13	FSM	ENSMUSG00000037458.16	ENSMUST00000110329.8	4217	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	173.208669112015	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTACTTTGATGGCTT	NA	False	NA	-8	True	GATAAA	-16	NA	38519507	38488481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
transcript_4341.nic	chr1	+	2270	14	ISM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	-37	729	-37	0	5prime_fragment	FALSE	canonical	3	546	junction_5	45.0821734931215	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTTTTGCTTGCATGT	NA	False	NA	25	True	ATTAAA	-18	NA	131080880	131099247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673
transcript_43416.nnic	chr15	-	3891	12	NNC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	-27	52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.944696405324	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGTGTATATTGCCC	NA	False	NA	-4	True	AATAGA	-18	NA	38519537	38488429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_38490624_38491874_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
transcript_43418.known	chr15	-	4871	12	FSM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	0	0	0	0	multi-exon	FALSE	canonical	2	359	junction_2	59.7608180323933	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGGTGGTTGGTGTTTG	NA	False	NA	-1	True	ATTAAA	-15	NA	38519510	38487670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
transcript_43419.known	chr15	-	4109	12	FSM	ENSMUSG00000037458.16	ENSMUST00000129589.8	4109	12	0	0	0	0	multi-exon	FALSE	canonical	2	46	junction_7	170.115711713824	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTTACTTTGATGG	NA	False	NA	-11	True	GATAAA	-13	NA	38519413	38488484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_38490717_38491719_38491935_38492487_38492601_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497795_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
transcript_43450.known	chr15	+	2071	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	0	0	0	0	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	506	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCTAGTCATTTATTTT	184	False	NA	31	True	AATAAA	-17	NA	38662176	38692690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
transcript_43469.known	chr15	+	4325	7	FSM	ENSMUSG00000022297.16	ENSMUST00000179165.9	4325	7	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	5.64702478203247	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTGTATTGTGTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	38869428	38901583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_38869828_38870619_38870959_38889060_38889258_38894209_38895228_38897244_38897394_38898202_38898623_38899780
transcript_43471.known	chr15	+	4081	7	FSM	ENSMUSG00000022297.16	ENSMUST00000022906.8	4081	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	6.28269227499025	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGATTGTATTGTGTG	NA	False	NA	NA	False	AATAAA	-12	NA	38869727	38901581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_38869885_38870619_38870959_38889060_38889258_38894209_38895228_38897244_38897394_38898202_38898623_38899780
transcript_43473.known	chr15	+	1166	4	FSM	ENSMUSG00000054196.8	ENSMUST00000067072.5	1166	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1.88561808316413	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTGTTTATTTGTTTGA	NA	False	NA	NA	False	AATAAA	-18	NA	38940326	38950516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_38940555_38943877_38944100_38947660_38947878_38950017
transcript_43475.known	chr15	-	979	7	FSM	ENSMUSG00000022299.10	ENSMUST00000227323.2	979	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	37.5307281511504	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTCATTAGAGTGACTCC	NA	False	NA	NA	False	TTTAAA	-42	NA	38976068	38959463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_38959504_38960914_38961061_38961523_38961593_38963267_38963429_38965377_38965464_38969226_38969378_38975742
transcript_43476.known	chr15	-	5905	7	FSM	ENSMUSG00000022299.10	ENSMUST00000022908.10	5905	7	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	10.9392260542813	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAATTTGGCCTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	38976111	38954625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_38959504_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
transcript_43478.known	chr15	+	1551	11	FSM	ENSMUSG00000022300.11	ENSMUST00000022909.10	1551	11	0	0	0	0	multi-exon	FALSE	canonical	2	478	junction_2	96.4514903980234	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	38976259	39010251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_38976447_38982105_38982306_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
transcript_43484.nic	chr15	+	2715	11	NIC	ENSMUSG00000037386.17	novel	4760	26	NA	NA	-286	17987	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	5.88642506110457	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGGATTTTTAACTAATA	NA	False	NA	NA	False	NA	NA	NA	39061369	39335860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_39061934_39155496_39155708_39208705_39209017_39300392_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729
transcript_43487.known	chr15	+	3685	6	FSM	ENSMUSG00000037386.17	ENSMUST00000226410.2	3685	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	17.2348484182484	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTGTTGAGGGTGCTG	NA	False	NA	4	True	AATAAA	-14	NA	39522961	39547768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_39523323_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
transcript_43491.known	chr15	+	1997	4	FSM	ENSMUSG00000022303.10	ENSMUST00000022913.6	1997	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8.9938250421547	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGATCATGTGACTTT	NA	False	NA	10	True	NA	NA	NA	39609327	39624334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_39609364_39617579_39618622_39622709_39623019_39623724
transcript_43493.known	chr15	-	2110	10	FSM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	67.0043300609265	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39720866	39646092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_39646506_39647964_39648111_39656622_39656831_39687561_39687705_39690259_39690402_39691370_39691528_39705318_39705509_39707253_39707434_39710004_39710164_39720494
transcript_43498.nic	chr15	-	742	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72573	0	8354	0	3prime_fragment	FALSE	canonical	3	216	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39648293	39646092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_39646506_39647964
transcript_43499.known	chr15	-	4109	7	FSM	ENSMUSG00000022305.14	ENSMUST00000022916.13	4109	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	6.95221787153807	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGTTGTTCTTTATTTT	NA	False	NA	-2	True	ATTAAA	-36	NA	39807184	39733984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_39736275_39739482_39739616_39741190_39742296_39743515_39743719_39748401_39748538_39767934_39767992_39806999
transcript_43502.known	chr15	-	4244	6	FSM	ENSMUSG00000022305.14	ENSMUST00000110305.3	4244	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	13.6733317081098	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTACTTTTTAAATCAAAG	NA	False	NA	-16	True	ATTAAA	-22	NA	39807390	39733998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_39736275_39739482_39739616_39741190_39742296_39743515_39743719_39748401_39748538_39806999
transcript_43507.known	chr15	+	4515	16	FSM	ENSMUSG00000022307.17	ENSMUST00000090096.11	4515	16	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	96.1974820645299	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAGTTTGGATTTTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	41310877	41724441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_41310986_41398965_41399124_41516860_41517058_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
transcript_43513.known	chr15	+	4346	14	FSM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_7	35.9990137931977	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTTTGGATTTTTTCAA	NA	False	NA	NA	False	AATAAA	-20	NA	41652336	41724443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
transcript_43527.nic	chr15	+	2034	10	ISM	ENSMUSG00000022307.17	ENSMUST00000090096.11	4515	16	-51	37582	-51	3083	5prime_fragment	FALSE	canonical	3	24	junction_1	103.235437498737	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAATATTGGTTTGCAGT	NA	False	NA	NA	False	GATAAA	-4	NA	41310826	41686859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_41310986_41398965_41399124_41516860_41517058_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722
transcript_43529.nic	chr15	+	2127	9	ISM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	0	34875	0	-857	5prime_fragment	FALSE	canonical	3	180	junction_7	41.0662574384372	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATTGCACAAAAGCAGAT	NA	False	NA	NA	False	AAAAAG	-12	NA	41652336	41689568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285
transcript_43531.nic	chr15	+	2750	9	ISM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	0	34252	0	-234	5prime_fragment	FALSE	canonical	3	180	junction_7	41.0662574384372	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTTGGTTAAAGTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	41652336	41690191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285
transcript_43532.nic	chr15	+	2984	9	ISM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	0	34018	0	0	5prime_fragment	FALSE	canonical	3	180	junction_7	41.0662574384372	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCTAGTTTCATTTATA	NA	False	NA	NA	False	NA	NA	NA	41652336	41690425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285
transcript_43535.nic	chr15	+	1871	8	ISM	ENSMUSG00000022307.17	ENSMUST00000170127.9	4346	14	-59	37584	-59	3083	5prime_fragment	FALSE	canonical	3	180	junction_7	39.4347821195493	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAATATTGGTTTGCAGT	NA	False	NA	NA	False	GATAAA	-4	NA	41652277	41686859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_41652629_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722
transcript_43538.known	chr15	+	798	6	FSM	ENSMUSG00000022307.17	ENSMUST00000166917.3	798	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	110.164241022212	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGCAGGACATCGGCCC	NA	False	NA	NA	False	AATAAA	-15	NA	41694327	41722704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_41694526_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
transcript_4354.known	chr1	-	3485	6	FSM	ENSMUSG00000026430.17	ENSMUST00000027688.15	3485	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.01980390271856	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACGATGGAATCGTCCTT	NA	False	NA	NA	False	AATAAA	-19	NA	131172995	131104146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_131106415_131108289_131108406_131108890_131109189_131109880_131109992_131139993_131140116_131172425
transcript_43545.known	chr15	-	1506	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	0	0	0	multi-exon	TRUE	canonical	3	2495	junction_1	136.260065887095	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2663	False	NA	-22	True	AATAAA	-16	NA	43146115	43113453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
transcript_43548.nic	chr15	-	1377	12	ISM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	-75	1446	-75	-1330	5prime_fragment	FALSE	canonical	3	2534	junction_3	122.477793568285	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAATCAGAACAGTAGATC	2588	False	NA	NA	False	AAGAAA	-1	NA	43146190	43114899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
transcript_43551.known	chr15	+	1231	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_9	74.0384359640315	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGAAAATTCTAGTTTC	NA	False	NA	10	True	AATAAA	-20	NA	43340624	43391159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
transcript_43553.nic	chr15	+	830	10	ISM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	-20	13968	-20	-13968	5prime_fragment	FALSE	canonical	3	590	junction_9	78.0427233421968	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAACATCAAATATGCTAG	NA	False	NA	NA	False	AATGAA	-5	NA	43340604	43377191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140
transcript_43554.known	chr15	-	2600	10	FSM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	53.0869308043159	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCATTGTTTAGATTGGT	NA	False	NA	71	True	AATAAA	-19	NA	44291703	44239466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
transcript_43557.known	chr15	-	5077	10	FSM	ENSMUSG00000038736.11	ENSMUST00000227843.2	5077	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_5	79.6338844685826	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCTTGTCTGGA	NA	False	NA	NA	False	AATAAA	-23	NA	44291269	44236558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263624_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
transcript_4356.known	chr1	-	3076	5	FSM	ENSMUSG00000026430.17	ENSMUST00000068564.15	3076	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.22474487139159	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACGATGGAATCGTCCTT	8551	False	NA	NA	False	AATAAA	-19	NA	131127872	131104146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_131106415_131108289_131108406_131108890_131109189_131109880_131109992_131127589
transcript_43563.known	chr15	+	654	6	FSM	ENSMUSG00000022338.9	ENSMUST00000228130.2	654	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	414.684747730128	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTCTGTTTATTACTG	9651	False	NA	40	True	AATAAA	-42	NA	44291522	44299290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_44291567_44292955_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
transcript_43567.known	chr15	+	558	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_1	272.243457221657	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9616	False	NA	13	True	AATAAA	-15	NA	44291487	44299263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_44291567_44292955_44293033_44295833_44295905_44297294_44297370_44299007
transcript_43569.known	chr15	+	502	5	FSM	ENSMUSG00000022338.9	ENSMUST00000227425.2	502	5	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_3	351.373732655132	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGATTTATTTCTGAAA	9632	False	NA	-59	True	NA	NA	NA	44291503	44299106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297249_44297370_44299007
transcript_43571.known	chr15	+	2547	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226336.2	2547	5	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	350.174510066053	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGATTTAAAAAATGGCA	9639	False	NA	NA	False	TATAAA	-20	NA	44291510	44301205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297296_44297370_44299007
transcript_43580.known	chr15	+	849	3	FSM	ENSMUSG00000022338.9	ENSMUST00000232353.2	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_1	134	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGGACTCATTTGTAACAA	9566	False	NA	NA	False	NA	NA	NA	44291437	44296404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_44291639_44292955_44293033_44295833
transcript_43581.known	chr15	-	2231	1	FSM	ENSMUSG00000038736.11	ENSMUST00000226660.2	2231	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGATGATTTG	NA	False	NA	NA	False	NA	NA	NA	44291250	44289019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_44289000_44291200
transcript_43582.known	chr15	+	1613	7	FSM	ENSMUSG00000022339.10	ENSMUST00000022964.9	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	29.9467119322899	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTGTATATCCTTATT	NA	False	NA	12	True	ATTAAA	-22	NA	44482986	44504422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_44483339_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_43584.known	chr15	+	1945	7	FSM	ENSMUSG00000022339.10	ENSMUST00000227691.2	1945	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	13.0894359440479	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAACTGATTTTCTGTGGC	NA	False	NA	NA	False	ATTAAA	-19	NA	44482570	44504911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_44482766_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_43586.known	chr15	+	1931	7	FSM	ENSMUSG00000022339.10	ENSMUST00000226165.2	1931	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	30.3076814612328	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCCTTCAGTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	44482835	44504624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_44483304_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_4359.known	chr1	-	3251	22	FSM	ENSMUSG00000042349.14	ENSMUST00000062108.10	3251	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	6.97549972201864	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTATGGTACCTGACCG	NA	False	NA	NA	False	AATAAA	-24	NA	131207344	131182333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537_131197625_131197754_131197847_131197922_131197988_131198623_131198821_131199499_131199680_131199844_131199956_131201107_131201269_131201377_131201560_131202886_131203017_131203443_131203585_131204204_131204316_131206435_131206525_131207068
transcript_43597.known	chr15	-	4436	7	FSM	ENSMUSG00000038679.17	ENSMUST00000077935.6	4436	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	8.03464719546263	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAAAAGGA	9968	False	NA	NA	False	AATGAA	-41	NA	50753437	50523846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224_50695355_50709409_50710339_50752999_50753112_50753185
transcript_4361.nic	chr1	-	2822	18	ISM	ENSMUSG00000042349.14	ENSMUST00000161764.8	2867	21	1479	0	1241	0	3prime_fragment	FALSE	canonical	1	1	junction_15	6.08759587435071	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCAGCTATGGTACCT	NA	False	NA	NA	False	AATAAA	-19	NA	131203209	131182338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537_131197625_131197754_131197847_131197922_131197988_131198623_131198821_131199499_131199680_131199844_131199956_131201107_131201269_131201377_131201560_131202886
transcript_43611.known	chr15	-	6202	6	FSM	ENSMUSG00000038679.17	ENSMUST00000183757.8	6202	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	8.30421579681068	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAGAAAAAAAAA	NA	False	NA	28	True	NA	NA	NA	50752445	50521824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224_50695355_50709409_50710339_50752337
transcript_43612.known	chr15	-	9859	6	FSM	ENSMUSG00000038679.17	ENSMUST00000165201.9	9859	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	5.30659966456864	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCTTATAGTAGCATTA	NA	False	NA	NA	False	ATTAAA	-20	NA	50753087	50518147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224_50695355_50709409_50710339_50752999
transcript_43628.known	chr15	-	1295	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	0	0	0	0	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	1599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	False	NA	-12	True	AATAAA	-24	NA	51728919	51649953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
transcript_43635.known	chr15	+	2921	3	FSM	ENSMUSG00000022313.11	ENSMUST00000137116.3	2921	3	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	13	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTTTAATAATAGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51740824	51748010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_51741107_51744411_51744587_51745546
transcript_43636.known	chr15	+	582	2	FSM	ENSMUSG00000022313.11	ENSMUST00000161651.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTCAGTTGTTGCTTTG	NA	False	NA	27	True	AGTAAA	-24	NA	51740873	51746085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_51741040_51745669
transcript_4364.known	chr1	-	8026	23	FSM	ENSMUSG00000026425.16	ENSMUST00000097588.9	8026	23	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_2	12.3013135091171	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTTTGTCCTTGTCCTG	NA	False	NA	NA	False	AAAACA	-1	NA	131455085	131212988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_131217479_131220258_131220584_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
transcript_43641.known	chr15	-	3956	14	FSM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	0	0	0	0	multi-exon	FALSE	canonical	3	565	junction_13	70.6746022859982	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAGACCCGGGAAGA	NA	False	NA	NA	False	NA	NA	NA	51855143	51825635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
transcript_43646.nic	chr15	-	1849	12	ISM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	-18	4375	-18	-4375	5prime_fragment	FALSE	canonical	3	565	junction_11	72.6766869528756	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGGAGAAGGAAGAGGA	NA	False	NA	3	True	NA	NA	NA	51855161	51830010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
transcript_43647.nic	chr15	-	1861	12	ISM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	-128	4473	-128	-4473	5prime_fragment	FALSE	canonical	3	565	junction_11	72.6766869528756	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAATACCACCAGTAGAA	NA	False	NA	-95	True	NA	NA	NA	51855271	51830108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
transcript_43651.known	chr15	+	1348	2	FSM	ENSMUSG00000068522.5	ENSMUST00000090025.5	1348	2	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTTCTAGTGGTCAT	NA	False	NA	16	True	AATAAA	-27	NA	51903502	51909118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_51903927_51908194
transcript_43652.known	chr15	-	612	1	FSM	ENSMUSG00000057262.3	ENSMUST00000081993.3	612	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATACCATGATATTTGTAA	NA	False	NA	NA	False	NA	NA	NA	52341624	52341012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_52341000_52341600
transcript_43658.known	chr15	+	1007	4	FSM	ENSMUSG00000038622.9	ENSMUST00000037115.9	1007	4	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_2	11.2644968324772	449	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCAGTTTTACTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	52575837	52593960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_52576083_52582741_52582901_52584419_52584525_52593462
transcript_43660.known	chr15	-	7663	11	FSM	ENSMUSG00000061731.10	ENSMUST00000077273.9	7663	11	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_10	11.8574870862253	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGTCTGATTCCATTTT	NA	False	NA	NA	False	AATAAA	-39	NA	53209555	52927433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_52932246_52936688_52936861_52939164_52939326_52946480_52946571_52951450_52951547_52953326_52953446_52955678_52955812_52965080_52965201_52969422_52969531_52970873_52970968_53207797
transcript_43664.nic	chr15	-	4833	27	NIC	ENSMUSG00000037343.9	novel	5031	26	NA	NA	-23	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_26	46.5584985473356	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGTCTGCCTTTGTTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	54935571	54878528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_54879550_54879768_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934844_54935242
transcript_43667.known	chr15	-	5031	26	FSM	ENSMUSG00000037343.9	ENSMUST00000041733.9	5031	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_25	41.14333967971	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTCTGCCTTTGTTTTTCT	NA	False	NA	-6	True	AATAAA	-18	NA	54935548	54878526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934844_54935242
transcript_4367.known	chr1	-	3533	22	FSM	ENSMUSG00000026425.16	ENSMUST00000186543.7	3533	22	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	23.367225143015	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTGCCAGATCTCTTG	NA	False	NA	0	True	AATAAA	-26	NA	131455085	131222955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_131223278_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
transcript_43673.nic	chr15	-	2035	14	ISM	ENSMUSG00000037343.9	ENSMUST00000226864.2	2713	16	-276	3110	-23	936	5prime_fragment	FALSE	canonical	0	0	junction_13	49.917565181101	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTAGGCAGTGAGTCCT	NA	False	NA	NA	False	AAGAAA	-40	NA	54935571	54911625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934844_54935242
transcript_43680.nnic	chr15	-	2353	10	NNC	ENSMUSG00000022422.14	novel	1499	10	NA	NA	-1800	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	82.6013780412953	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTATCCCTGACTTC	NA	False	NA	-8	True	AATAAA	-14	NA	54955687	54939497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621_54954754_54955521
transcript_43682.known	chr15	-	1324	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	27.4268914571083	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCCCTGACTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	54953887	54939494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
transcript_43683.known	chr15	-	1499	10	FSM	ENSMUSG00000022422.14	ENSMUST00000110231.2	1499	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	97.4314573887145	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTATCCCTGACTTC	NA	False	NA	-8	True	AATAAA	-14	NA	54953876	54939497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54946800_54946990_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
transcript_43685.known	chr15	+	1377	9	FSM	ENSMUSG00000022419.17	ENSMUST00000100660.11	1377	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	13.7380630002923	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATGTGCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	54975819	55083736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_54976016_55012736_55012916_55015183_55015308_55044260_55044440_55072126_55072313_55075587_55075723_55078883_55078955_55081564_55081670_55083534
transcript_43686.known	chr15	+	8547	9	FSM	ENSMUSG00000022419.17	ENSMUST00000096433.10	8547	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	6.05702071979286	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTGCTGACTTTTTCTC	NA	False	NA	10	True	AATAAA	-21	NA	54975712	55122667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_54976016_55012736_55012916_55015183_55015308_55044260_55044440_55072126_55072313_55075587_55075723_55078883_55078955_55081564_55081670_55115402
transcript_43702.known	chr15	+	3144	22	FSM	ENSMUSG00000022369.14	ENSMUST00000022998.14	3144	22	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_14	23.9707872097639	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	55420803	55489819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
transcript_43710.nic	chr15	+	2609	19	ISM	ENSMUSG00000022369.14	ENSMUST00000022998.14	3144	22	18	6599	18	-114	5prime_fragment	FALSE	canonical	3	131	junction_14	23.4792395821931	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAATCATCAAAGCAAAT	NA	False	NA	NA	False	NA	NA	NA	55420821	55483220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033
transcript_43714.known	chr15	-	1223	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_4	55.6070039553372	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55421144	55397489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
transcript_43715.known	chr15	-	730	6	FSM	ENSMUSG00000022370.14	ENSMUST00000164542.8	730	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	366.126754007407	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420745	55397489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55418715_55418840_55420653
transcript_43723.known	chr15	-	3175	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	0	0	0	0	multi-exon	TRUE	canonical	3	365	junction_5	42.5977866628236	337	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAGATGGTATGTGAG	NA	False	NA	NA	False	NA	NA	NA	57755844	57732897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
transcript_43734.nic	chr15	+	3543	22	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_18	60.8888806130719	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775557	57833457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
transcript_43738.known	chr15	+	3311	21	FSM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	36.9403234961471	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775594	57833457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
transcript_4374.known	chr1	+	6900	13	FSM	ENSMUSG00000042251.13	ENSMUST00000112393.9	6900	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	6.31741420378799	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATGTTCATGGGCCAG	NA	False	NA	NA	False	AATAAA	-10	NA	131725118	131749199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131725325_131726333_131726421_131728831_131729065_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724
transcript_43740.nic	chr15	+	3427	21	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	75.3023240013215	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775557	57833457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_57775788_57779365_57779513_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
transcript_43742.nnic	chr15	+	3180	20	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-2	-2	combination_of_known_splicesites	FALSE	canonical	3	57	junction_19	47.7117383072465	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCAAAGCTGAACTGTCT	NA	False	NA	6	True	AATAAA	-13	NA	57775627	57833455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57833119
transcript_43745.nic	chr15	+	3232	20	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	59.3076396586785	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775557	57833457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_57775788_57779365_57779513_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
transcript_43753.nic	chr15	+	3624	17	ISM	ENSMUSG00000022364.15	ENSMUST00000110175.9	3468	18	-72	1	-37	-1	intron_retention	FALSE	canonical	3	200	junction_2	25.2003689209107	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTTTTCTGCATGTAATT	NA	False	NA	1	True	AATAAA	-15	NA	57775557	57822797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732
transcript_43766.nnic	chr15	+	789	2	NIC	ENSMUSG00000022364.15	novel	914	6	NA	NA	5059	-2	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCAAAGCTGAACTGTCT	NA	False	NA	6	True	AATAAA	-13	NA	57826867	57833455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_57827321_57833119
transcript_43767.known	chr15	+	2876	4	FSM	ENSMUSG00000051225.10	ENSMUST00000160942.8	2876	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	4.49691252107735	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGACATAAATGTGAAACC	9213	False	NA	NA	False	NA	NA	NA	57848814	57874405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_57849938_57856302_57856471_57858609_57858735_57872945
transcript_43768.nnic	chr15	+	2222	3	NIC	ENSMUSG00000051225.10	novel	2876	4	NA	NA	226	-303	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCCCTGGACCTGATGG	9439	False	NA	NA	False	NA	NA	NA	57849040	57874102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_57849938_57856302_57856471_57872945
transcript_43774.nnic	chr15	-	1483	6	NNC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_4	316.693795329179	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTCCCAGGTAATTTCA	NA	False	NA	-20	True	AATAAA	-29	NA	57897776	57885665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895291_57895476_57897479
transcript_43775.known	chr15	-	1341	6	FSM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_4	117.266534015464	1114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTCAGCTGCTCTCAG	NA	False	NA	-9	True	AATAAA	-40	NA	57897711	57885654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
transcript_43786.known	chr15	-	5212	5	FSM	ENSMUSG00000022361.15	ENSMUST00000110168.8	5212	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	17.7816619020833	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTGAGTGATTTTTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	57939885	57910398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_57912182_57915619_57918479_57927450_57927577_57932714_57932826_57939552
transcript_43789.known	chr15	-	4764	4	FSM	ENSMUSG00000022361.15	ENSMUST00000070143.13	4764	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	5.18544972870135	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTAATGTGGTCTGAGTT	NA	False	NA	-1	True	ATTAAA	-21	NA	57939865	57910700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_57912182_57915619_57918479_57932714_57932826_57939552
transcript_43790.known	chr15	-	281	3	FSM	ENSMUSG00000022362.14	ENSMUST00000176076.2	281	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	19	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATCCAATGTCCAAAAGAA	NA	False	NA	NA	False	AAAACA	-1	NA	57939602	57912061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_57912182_57932714_57932826_57939552
transcript_43794.known	chr15	-	5684	28	FSM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	0	0	0	0	multi-exon	TRUE	canonical	3	283	junction_25	31.7407623492731	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCGTTTCTAGTTCTTGT	NA	False	NA	-11	True	AATAAA	-20	NA	57998478	57957441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_57958968_57959972_57960102_57960647_57960782_57961754_57962145_57963106_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
transcript_43799.nic	chr15	-	3754	25	ISM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	-38	4492	-38	-3134	5prime_fragment	FALSE	canonical	3	283	junction_22	29.3385412043612	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGACTTGAAAGCAACATAG	NA	False	NA	NA	False	AAGAAA	-14	NA	57998516	57961933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_57962145_57963106_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
transcript_43800.nic	chr15	-	3601	25	ISM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	-38	4645	-38	-3287	5prime_fragment	FALSE	canonical	3	283	junction_22	29.3385412043612	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGAAGGAAAATTTCACAAG	NA	False	NA	NA	False	AATAAA	-1	NA	57998516	57962086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_57962145_57963106_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
transcript_43802.nic	chr15	-	3543	24	ISM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	-38	5665	-38	3043	5prime_fragment	FALSE	canonical	3	283	junction_21	29.1591033491866	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTACTCTGGAATAATT	NA	False	NA	NA	False	NA	NA	NA	57998516	57963106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
transcript_43811.nic	chr15	-	1076	7	ISM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	-154	28464	-154	4455	5prime_fragment	FALSE	canonical	3	283	junction_4	26.9938264547038	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTATCTTAGGCAGAGA	NA	False	NA	15	True	NA	NA	NA	57998632	57985905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
transcript_43812.nic	chr15	-	801	6	ISM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	-38	31762	-38	1157	5prime_fragment	FALSE	canonical	3	283	junction_3	13.212115651931	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAAACTAAAGGCTATC	NA	False	NA	NA	False	TTTAAA	-32	NA	57998516	57989203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
transcript_43813.known	chr15	+	1383	6	FSM	ENSMUSG00000022359.11	ENSMUST00000067563.9	1383	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	11.5516232625549	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2660	False	NA	27	True	AATAAA	-17	NA	58004772	58022050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297
transcript_43814.known	chr15	+	798	5	FSM	ENSMUSG00000022359.11	ENSMUST00000228761.2	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	18.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCCAGCCTCAGACATAG	2675	False	NA	NA	False	NA	NA	NA	58004787	58021629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58016975_58017101_58021297
transcript_43816.known	chr15	+	394	4	FSM	ENSMUSG00000022359.11	ENSMUST00000226889.2	394	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.9228430488243	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTACCAAGCCTGACA	2720	False	NA	NA	False	NA	NA	NA	58004832	58021395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58021297
transcript_43818.known	chr15	+	747	3	FSM	ENSMUSG00000022359.11	ENSMUST00000228693.2	747	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	9.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAGCCAAAATAAACAGTT	2701	False	NA	NA	False	NA	NA	NA	58004813	58014484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_58004978_58011729_58011830_58014001
transcript_43821.known	chr15	+	5560	24	FSM	ENSMUSG00000037119.5	ENSMUST00000037270.5	5560	24	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_5	31.8077875639983	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGTGGAGAGTGTCTAA	NA	False	NA	16	True	AATAAA	-16	NA	58287316	58329589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_58287627_58292047_58292133_58293594_58293747_58295169_58295228_58296045_58296114_58296625_58296740_58298442_58298534_58298902_58298966_58301840_58301948_58302027_58302067_58302510_58302624_58303054_58303171_58304363_58304477_58304742_58304830_58306512_58306646_58313426_58313576_58314680_58314816_58315009_58315124_58319434_58319508_58320191_58320342_58321779_58321885_58322386_58322511_58324831_58324902_58326598
transcript_4383.known	chr1	+	2305	14	FSM	ENSMUSG00000042251.13	ENSMUST00000048660.12	2305	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	18.8779950795854	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCCAGAGAGACGGCTTA	NA	False	NA	NA	False	AATAAA	-22	NA	131725135	131749211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131725325_131726333_131726421_131728831_131729065_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724_131743850_131748439
transcript_43831.known	chr15	-	3747	7	FSM	ENSMUSG00000062373.9	ENSMUST00000072113.6	3747	7	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_6	14.2087609906314	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGGCTTCTGTATCTGCCC	NA	False	NA	87	True	AATAAA	-17	NA	58695379	58654117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_58656860_58658958_58659065_58661234_58661278_58662003_58662059_58666190_58666259_58669049_58669095_58694691
transcript_43835.known	chr15	-	3247	1	FSM	ENSMUSG00000062373.9	ENSMUST00000226578.2	3247	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAGAAAGGAAAAAAAAATC	NA	False	NA	NA	False	GATAAA	-6	NA	58695487	58692240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_58692200_58695500
transcript_43838.known	chr15	-	915	12	FSM	ENSMUSG00000050891.11	ENSMUST00000228538.3	915	12	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	18.2181455270914	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805576	58772822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
transcript_43849.known	chr15	+	704	4	FSM	ENSMUSG00000022354.5	ENSMUST00000022980.5	704	4	0	0	0	0	multi-exon	FALSE	canonical	3	3308	junction_3	178.75557489364	1995	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTGTGCCTGAAGTGT	2816	False	NA	13	True	AATAAA	-14	NA	58805604	58811337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_58805788_58808116_58808310_58809200_58809315_58811123
transcript_43852.known	chr15	+	4348	2	FSM	ENSMUSG00000037075.8	ENSMUST00000036904.7	4348	2	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGGGGTATTGTGACAC	NA	False	NA	NA	False	AATAAA	-25	NA	58761077	58774239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_58761344_58770157
transcript_43854.known	chr15	-	2089	2	FSM	ENSMUSG00000050891.11	ENSMUST00000226141.2	2089	2	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGCTTCTTGCTTTAT	NA	False	NA	NA	False	ATTAAA	-13	NA	58805562	58798544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_58800599_58805527
transcript_43859.nnic	chr15	-	2912	16	NNC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-80	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	29.1814248376524	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAACCTTGATCTTTTAA	2649	False	NA	-4	True	ATTAAA	-18	NA	58953934	58815096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_58815518_58815625_58815980_58817210_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58836345_58836358_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
transcript_43866.known	chr15	-	4938	15	FSM	ENSMUSG00000022353.11	ENSMUST00000080371.8	4938	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	26.147150311033	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCAGGTCTCCTTCAGA	2745	False	NA	NA	False	AATAAA	-19	NA	58953838	58813082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_58815980_58817210_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58836345_58836358_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
transcript_43873.nnic	chr15	-	3116	15	NNC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-133	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	28.1342445124392	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATAACCTTGATCTTTT	2596	False	NA	-6	True	ATTAAA	-16	NA	58953987	58815098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_58815980_58817165_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58836345_58836358_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
transcript_43874.nnic	chr15	-	3179	15	NNC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-300	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	28.1342445124392	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAGTCTATAATCAAGCA	2429	False	NA	1	True	AATAAA	-21	NA	58954154	58815202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_58815980_58817165_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58836345_58836358_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
transcript_4388.known	chr1	+	4697	11	FSM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	13.4402380931292	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTATCCCTGTGTGTCT	5202	False	NA	23	True	AATAAA	-20	NA	131755714	131776603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131756132_131757748_131758729_131766852_131766961_131767914_131767987_131768592_131768738_131768865_131769013_131769722_131769871_131770686_131770767_131771656_131771792_131772075_131772225_131774287
transcript_43880.nic	chr15	-	3057	14	NIC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-306	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	30.750956111561	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGATCTTTTAATTTGTA	2423	False	NA	2	True	ATTAAA	-24	NA	58954160	58815090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_58815980_58817210_58817374_58817694_58817869_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58836345_58836358_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
transcript_43885.nic	chr15	-	2738	14	NIC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-105	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	30.750956111561	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCATTCCAGTCTATAAT	2624	False	NA	-5	True	AATAAA	-15	NA	58953959	58815208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_58815980_58817210_58817374_58817694_58817869_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58836345_58836358_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
transcript_43893.nic	chr15	-	1262	5	ISM	ENSMUSG00000022353.11	ENSMUST00000080371.8	4938	15	-416	29744	-400	-19325	5prime_fragment	FALSE	canonical	3	67	junction_2	6.02079728939615	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACAGCATGGGCCCTGGA	2329	False	NA	NA	False	AAGAAA	-34	NA	58954254	58842826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
transcript_43894.known	chr15	-	2956	3	FSM	ENSMUSG00000022353.11	ENSMUST00000228655.2	2956	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	3.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAATCTA	2729	False	NA	NA	False	AGTAAA	-21	NA	58953854	58924596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_58926941_58930209_58930272_58953304
transcript_43900.known	chr15	+	2758	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	1903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTCTTTTGGTTTTTGTT	NA	False	NA	13	True	AATAAA	-18	NA	59186929	59203041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
transcript_43906.known	chr15	+	2636	10	FSM	ENSMUSG00000022351.15	ENSMUST00000100640.5	2636	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	253.025690395264	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTCTTTTGGTTTTTGTT	NA	False	NA	13	True	AATAAA	-18	NA	59186955	59203041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59197883_59198027_59198418_59198516_59201588_59201677_59202573
transcript_43921.nnic	chr15	-	4295	30	NNC	ENSMUSG00000022350.8	novel	4033	29	NA	NA	-52	798	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.1580698835967	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACATAAGAGTTCACTCTT	NA	False	NA	NA	False	TATAAA	-24	NA	59246068	59203047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_59203232_59203819_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971_59233086_59235042_59235196_59238011_59238205_59239243_59239345_59240224_59240310_59241001_59241148_59241728_59242035_59245889
transcript_43928.known	chr15	-	4033	29	FSM	ENSMUSG00000022350.8	ENSMUST00000022976.6	4033	29	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_18	44.6203943487363	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTGCCCTGCTTGTGA	NA	False	NA	-3	True	AGTAAA	-16	NA	59246016	59203845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971_59233086_59235042_59235196_59238011_59238205_59239243_59239345_59240224_59240310_59241001_59241148_59241728_59242035_59245889
transcript_43940.known	chr15	+	1122	8	FSM	ENSMUSG00000059586.11	ENSMUST00000227173.2	1122	8	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	348.219025608766	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATCCTCAGCTCAGCA	NA	False	NA	4	True	AATAAA	-5	NA	59246133	59473521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59368625_59368704_59463545_59463647_59463986_59464094_59473188
transcript_43942.known	chr15	+	1054	7	FSM	ENSMUSG00000059586.11	ENSMUST00000079703.11	1054	7	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_4	74.7677886674618	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	16	True	AATAAA	-17	NA	59246135	59473533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
transcript_43952.known	chr15	+	4330	3	FSM	ENSMUSG00000032501.10	ENSMUST00000067543.8	4330	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	4.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGATTTCAGGTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	59520198	59528948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_59521372_59523327_59523621_59526084
transcript_43954.known	chr15	+	3081	2	FSM	ENSMUSG00000032501.10	ENSMUST00000118228.2	3081	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTCACCGTCCCCCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	59520501	59525538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_59521372_59523327
transcript_43956.known	chr15	+	3074	3	FSM	ENSMUSG00000097493.4	ENSMUST00000180730.3	3074	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTGGTGAGTTCCTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	60694119	60700499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_60696633_60699180_60699212_60699969
transcript_43958.nnic	chr15	+	2047	3	NNC	ENSMUSG00000097493.4	novel	3074	3	NA	NA	-12	0	intron_retention	FALSE	canonical	1	1	junction_1	1.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTGGTGAGTTCCTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	60694789	60700499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_60696276_60699180_60699212_60699969
transcript_43960.nnic	chr15	-	2677	3	NNC	ENSMUSG00000072568.5	novel	5565	2	NA	NA	59	-326	intron_retention	FALSE	canonical	3	5	junction_1	17.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCCGCTTCCTCTTTAC	NA	False	NA	-5	True	AATAAA	-17	NA	60696870	60691168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_60692121_60694623_60695841_60696362
transcript_43961.known	chr15	-	5565	2	FSM	ENSMUSG00000072568.5	ENSMUST00000100635.5	5565	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTTTTCCTTTTTTTTTC	NA	False	NA	NA	False	AATACA	-14	NA	60696929	60690842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_60695841_60696362
transcript_43963.known	chr15	+	2657	1	FSM	ENSMUSG00000097493.4	ENSMUST00000192865.2	2657	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAATTAGCAGAGAC	NA	False	NA	NA	False	NA	NA	NA	60694801	60697458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_60694800_60697500
transcript_43966.known	chr15	+	1362	3	FSM	ENSMUSG00000022346.18	ENSMUST00000191178.3	1362	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	7	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGACCTAACTCGAGGAGG	NA	False	NA	NA	False	NA	NA	NA	61857770	61861757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_61857801_61859358_61860128_61861194
transcript_4398.known	chr1	+	1226	6	FSM	ENSMUSG00000026433.14	ENSMUST00000027693.8	1226	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	27.6506781110337	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	15	True	ATTAAA	-17	NA	131794977	131800625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131795149_131795256_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
transcript_43980.nnic	chr15	+	1341	7	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	6.0736223860962	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAGTCATGATTGTCA	NA	False	NA	27	True	AATAAA	-35	NA	61909850	62121377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_61910051_61978996_61979315_62021087_62021202_62047315_62047398_62114022_62114151_62114282_62114411_62121006
transcript_43995.nic	chr15	-	2242	14	NIC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	-128	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_10	363.626149130341	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932455	63802792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63829433_63829517_63842778_63842818_63894418_63894470_63932043
transcript_44.known	ERCC-00131	+	755	1	FSM	ERCC-00131A	DQ855003	755	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00131_+_0_800
transcript_4400.known	chr1	+	1202	5	FSM	ENSMUSG00000026433.14	ENSMUST00000112386.8	1202	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	6.13901457890434	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGCATCTGCGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	131794961	131800477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
transcript_44004.nic	chr15	-	2112	13	NIC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	-261	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_10	411.541310198624	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	8478	False	NA	-6	True	AATAAA	-20	NA	63870079	63802792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63829433_63829517_63842778_63842818_63869746
transcript_44009.known	chr15	-	1896	13	FSM	ENSMUSG00000022378.15	ENSMUST00000228226.2	1896	13	0	0	0	0	multi-exon	FALSE	canonical	3	743	junction_12	159.721024150096	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932192	63802792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932043
transcript_44021.known	chr15	-	1770	12	FSM	ENSMUSG00000022378.15	ENSMUST00000164532.3	1770	12	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	247.062410558028	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	8739	False	NA	-4	True	AATAAA	-22	NA	63869818	63802790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63869746
transcript_44022.known	chr15	-	3797	12	FSM	ENSMUSG00000022378.15	ENSMUST00000063838.11	3797	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_11	317.474070002523	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCCTCATTTGTATATAT	NA	False	NA	-4	True	NA	NA	NA	63932297	63800945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63932043
transcript_44023.nnic	chr15	-	2120	12	NIC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	-128	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_10	331.600900217103	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932455	63802792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63894418_63894470_63932043
transcript_44025.nnic	chr15	-	1942	11	NIC	ENSMUSG00000022378.15	novel	1770	12	NA	NA	-213	0	combination_of_known_splicesites	FALSE	canonical	3	52	junction_10	335.160260174144	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	8526	False	NA	-6	True	AATAAA	-20	NA	63870031	63802792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63869746
transcript_4404.known	chr1	+	5998	7	FSM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	0	0	0	0	multi-exon	FALSE	canonical	3	1163	junction_5	186.902306626275	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTGCTTCGTGTGCTT	9304	False	NA	27	True	TATAAA	-18	NA	131838293	131864059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350_131857501_131858771
transcript_44042.known	chr15	-	4535	30	FSM	ENSMUSG00000022377.17	ENSMUST00000110115.9	4535	30	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_28	25.7623364351316	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCTTGTTTCTGGTC	NA	False	NA	-3	True	ATTAAA	-20	NA	64254768	63960389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030766_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197_64184325_64221676_64221763_64254565
transcript_44044.known	chr15	-	6164	28	FSM	ENSMUSG00000022377.17	ENSMUST00000177371.8	6164	28	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_19	14.5305128081956	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATCTGACATCAGGCCA	NA	False	NA	-8	True	AATAAA	-20	NA	64184522	63958705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030730_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
transcript_44045.known	chr15	-	4415	28	FSM	ENSMUSG00000022377.17	ENSMUST00000177083.8	4415	28	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_19	18.359240953674	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTTTCTGGTCACTCA	NA	False	NA	2	True	ATTAAA	-25	NA	64184488	63960384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030766_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
transcript_44063.nic	chr15	-	1120	8	ISM	ENSMUSG00000022377.17	ENSMUST00000177083.8	4415	28	-193	71686	-159	-1283	5prime_fragment	FALSE	canonical	3	103	junction_3	7.73542078324622	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCCCTACTTCTAGCA	NA	False	NA	NA	False	GATAAA	-43	NA	64184681	64032070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
transcript_44064.nic	chr15	-	820	6	ISM	ENSMUSG00000022377.17	ENSMUST00000177083.8	4415	28	-55	79164	-21	5518	5prime_fragment	FALSE	canonical	3	103	junction_1	7.65767588763066	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAGCAGACCTTCCCAG	NA	False	NA	NA	False	AAGAAA	-42	NA	64184543	64039548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197
transcript_44068.known	chr15	-	985	3	FSM	ENSMUSG00000022377.17	ENSMUST00000175710.8	985	3	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAATAAAGCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64184522	64062891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_64063479_64080332_64080406_64184197
transcript_44075.known	chr15	+	2848	23	FSM	ENSMUSG00000015002.19	ENSMUST00000173858.8	2848	23	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_22	108.882983667015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGCAAAAATGATGTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	65658889	65741100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65740802
transcript_44076.known	chr15	+	5215	23	FSM	ENSMUSG00000015002.19	ENSMUST00000015146.16	5215	23	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_16	48.5493912261498	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGCATTTTTATTATAG	NA	False	NA	17	True	AATAAA	-24	NA	65658888	65745665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
transcript_44088.nic	chr15	+	2438	21	ISM	ENSMUSG00000015002.19	ENSMUST00000173858.8	2848	23	-25	2511	-18	-449	5prime_fragment	FALSE	canonical	3	451	junction_16	47.436905463995	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAACAGGAAAAGGAAAAGAG	NA	False	NA	13	True	NA	NA	NA	65658864	65738589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572
transcript_4409.nic	chr1	+	792	6	ISM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	-150	6627	-128	-377	5prime_fragment	FALSE	canonical	3	1163	junction_5	193.114059560665	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGTTAAGAAGTCCAAAC	9154	False	NA	6	True	AAAAAG	-12	NA	131838143	131857432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350
transcript_44096.known	chr15	+	1425	2	FSM	ENSMUSG00000015002.19	ENSMUST00000174135.2	1425	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCTGTCTTAAAGATTAT	NA	False	NA	NA	False	AATAAA	-21	NA	65658882	65663200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_65659096_65661988
transcript_44104.known	chr15	+	3203	13	FSM	ENSMUSG00000072501.6	ENSMUST00000230915.2	3203	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	21.9120717616771	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAGAAAAAGAAGAAGAAG	3836	False	NA	NA	False	NA	NA	NA	66449414	66495906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_66449697_66451921_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469513_66469604_66475875_66476090_66476628_66476755_66481374_66481458_66484869_66485120_66487068_66487258_66487486_66487697_66494609
transcript_4411.nic	chr1	+	515	5	ISM	ENSMUSG00000026434.13	ENSMUST00000189946.7	2375	7	-66	4596	-66	-1988	5prime_fragment	FALSE	canonical	3	1429	junction_2	117.865389321887	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGATCATAAAAATGTACG	9216	False	NA	18	True	NA	NA	NA	131838205	131855821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801
transcript_44111.known	chr15	+	3263	9	FSM	ENSMUSG00000072501.6	ENSMUST00000230882.2	3263	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	13.8834433769148	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATGGCTCTAATTACTTT	3830	False	NA	NA	False	AATAAA	-16	NA	66449408	66483465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_66449697_66451917_66452038_66466655_66466828_66466963_66467049_66469207_66469297_66469525_66469604_66475875_66476090_66476628_66476755_66481374
transcript_4412.nic	chr1	+	493	4	ISM	ENSMUSG00000026434.13	ENSMUST00000189946.7	2375	7	-64	8038	-64	-5430	5prime_fragment	FALSE	canonical	3	1429	junction_2	60.9936244391348	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCCATGTTTATTGCAG	9218	False	NA	NA	False	AAAAAG	-37	NA	131838207	131852379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323
transcript_44120.known	chr15	+	5097	5	FSM	ENSMUSG00000005124.11	ENSMUST00000005255.9	5097	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.433012701892219	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTGATTTGGATTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	66763168	66795050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_66763484_66778249_66778530_66784677_66784939_66789125_66789320_66791003
transcript_44121.known	chr15	-	2889	16	FSM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_13	7.67854152818099	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTCTTTTCCTCTCC	NA	False	NA	0	True	AATAAA	-18	NA	66841489	66801166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832402_66841352
transcript_44122.nic	chr15	-	2951	16	NIC	ENSMUSG00000005125.14	novel	2889	16	NA	NA	0	0	intron_retention	FALSE	canonical	1	1	junction_15	12.2245654319489	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTCTTTTCCTCTCC	NA	False	NA	0	True	AATAAA	-18	NA	66841488	66801166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832465_66841352
transcript_44126.known	chr15	-	5732	9	FSM	ENSMUSG00000013846.11	ENSMUST00000229028.2	5732	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.93649167310371	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCGTGTTCGGAGTTCTG	NA	False	NA	NA	False	AATAAA	-21	NA	67048679	66974723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_66978680_66980057_66980178_66981454_66981501_66983080_66983261_66984279_66984477_66985355_66986207_67000401_67000457_67024891_67025020_67048480
transcript_44128.nic	chr15	-	4480	16	NIC	ENSMUSG00000022335.18	novel	4388	16	NA	NA	-71	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	5.94194132137525	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTCTCACCCCCCCCCC	NA	False	NA	NA	False	AATAAA	-3	NA	68130776	67955612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_67956411_67973319_67973451_67976804_67976929_67982325_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559_68050793_68051565_68053008_68056269_68056421_68058899_68059086_68084441_68084694_68096615_68096793_68130516
transcript_44129.known	chr15	-	4388	16	FSM	ENSMUSG00000022335.18	ENSMUST00000162054.9	4388	16	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_13	6.94742158406028	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTCTCACCCCCCCCCC	NA	False	NA	NA	False	AATAAA	-3	NA	68130705	67955612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_67956411_67973319_67973451_67976804_67976929_67982325_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559_68050793_68051565_68053008_68056269_68056421_68058899_68059086_68084462_68084694_68096615_68096793_68130516
transcript_4413.nic	chr1	+	434	3	ISM	ENSMUSG00000026434.13	ENSMUST00000189946.7	2375	7	-61	10631	-61	-8023	5prime_fragment	FALSE	canonical	3	1429	junction_2	42	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGAGGCGTCATTGTTGG	9221	False	NA	NA	False	NA	NA	NA	131838210	131849786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_131838489_131846742_131846793_131849680
transcript_44130.known	chr15	+	483	1	FSM	ENSMUSG00000068397.5	ENSMUST00000089785.5	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1480	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	68181667	68182150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_68181700_68182200
transcript_44131.known	chr15	+	1887	9	FSM	ENSMUSG00000022332.9	ENSMUST00000022954.7	1887	9	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_5	27.0277635034792	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAATTTTGTGTGTGTG	NA	False	NA	7	True	AATAAA	-7	NA	68800268	68965361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_68800683_68866900_68867020_68885206_68885324_68889176_68889324_68896548_68896689_68901563_68901760_68921227_68921311_68962982_68963042_68964749
transcript_44136.nic	chr15	-	4014	23	NIC	ENSMUSG00000047921.18	novel	4048	22	NA	NA	61	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	48.4420075881827	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTTGATTTCAGACT	NA	False	NA	-1	True	AATAAA	-21	NA	72932992	72461468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_72462012_72462464_72462689_72557131_72557223_72565352_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72914025_72914053_72922443_72922573_72924010_72924157_72929770_72930364_72932809
transcript_44139.known	chr15	-	4048	22	FSM	ENSMUSG00000047921.18	ENSMUST00000089770.11	4048	22	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	34.9692446667405	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTTGATTTCAGACT	NA	False	NA	-1	True	AATAAA	-21	NA	72933053	72461468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_72462012_72462464_72462689_72557131_72557223_72565352_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72922443_72922573_72924010_72924157_72929770_72930364_72932809
transcript_44143.known	chr15	-	4725	1	FSM	ENSMUSG00000106847.2	ENSMUST00000202826.2	4725	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATGGGAAAGTTCTTTG	NA	False	NA	2	True	AATAAA	-27	NA	72682173	72677448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_72677400_72682200
transcript_44146.known	chr15	-	13800	19	FSM	ENSMUSG00000036698.12	ENSMUST00000044113.12	13800	19	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_13	10.6510302057803	369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGAAGGTGTCCAGTTAC	4444	False	NA	-24	True	AATAAA	-35	NA	73056784	72967692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_72978866_72979013_72979214_72980220_72980323_72983535_72983671_72985556_72985752_72988151_72988243_72991185_72991346_72992912_72993098_72995171_72995306_72995725_72995849_72995978_72996099_72997012_72997161_72998295_72998384_72998802_72998938_73000172_73000310_73002709_73002892_73009841_73009963_73018218_73018415_73056609
transcript_44155.known	chr15	+	871	3	FSM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_2	8	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCTTCATTGAAGTGG	NA	False	NA	7	True	ATTAAA	-18	NA	72962240	72965924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_72962433_72964681_72964809_72965372
transcript_44156.known	chr15	+	2114	2	FSM	ENSMUSG00000068391.9	ENSMUST00000137698.2	2114	2	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACACATTGTGTTTGTGT	NA	False	NA	NA	False	TATAAA	-3	NA	72962260	72966623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_72962433_72964681
transcript_44165.known	chr15	-	4675	34	FSM	ENSMUSG00000022607.19	ENSMUST00000226988.3	4675	34	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	70.9887017485264	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCATTGCCTTTTTTTT	1740	False	NA	-4	True	AATAAA	-44	NA	73294977	73076950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_73078110_73081176_73081258_73082590_73082747_73083835_73083845_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73231874_73232187_73266496_73266594_73294857
transcript_44169.nic	chr15	-	4362	34	NIC	ENSMUSG00000022607.19	novel	4675	34	NA	NA	8	-232	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	66.3626954409566	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACTGGAGCTAACTGA	1664	False	NA	-11	True	ATTAAA	-17	NA	73295053	73077182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73083835_73083845_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73236889_73237045_73266496_73266594_73294857
transcript_4417.known	chr1	+	1586	6	FSM	ENSMUSG00000026436.16	ENSMUST00000027696.10	1586	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	7.24982758415674	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGACTGAGAGACCAAGG	312	False	NA	NA	False	NA	NA	NA	131935613	131951399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131935679_131940763_131940973_131942120_131942337_131945330_131946201_131947087_131947205_131951290
transcript_44177.nic	chr15	-	4426	34	NIC	ENSMUSG00000022607.19	novel	4540	35	NA	NA	6	-232	combination_of_known_junctions	FALSE	canonical	3	16	junction_31	58.6938329288105	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACTGGAGCTAACTGA	1662	False	NA	-11	True	ATTAAA	-17	NA	73295055	73077182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73263607_73263730_73264192_73264297_73266496_73266594_73294857
transcript_44178.nic	chr15	-	4449	33	NIC	ENSMUSG00000022607.19	novel	4675	34	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	57.9422446142493	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCATTGCCTTTTTTTT	1654	False	NA	-4	True	AATAAA	-44	NA	73295063	73076950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73083835_73083845_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73266496_73266594_73294857
transcript_44182.nic	chr15	-	4285	33	NIC	ENSMUSG00000022607.19	novel	4675	34	NA	NA	-2	-232	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	57.9422446142493	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACTGGAGCTAACTGA	1586	False	NA	-11	True	ATTAAA	-17	NA	73295131	73077182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73083835_73083845_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73266496_73266594_73294857
transcript_44186.nic	chr15	-	4339	33	NIC	ENSMUSG00000022607.19	novel	4417	32	NA	NA	1	-232	combination_of_known_junctions	FALSE	canonical	3	34	junction_31	46.9187191954075	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACTGGAGCTAACTGA	1678	False	NA	-11	True	ATTAAA	-17	NA	73295039	73077182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73236889_73237045_73266496_73266594_73294857
transcript_44187.nic	chr15	-	4340	33	NIC	ENSMUSG00000022607.19	novel	4417	32	NA	NA	-12	-232	combination_of_known_junctions	FALSE	canonical	3	22	junction_30	49.759882419852	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACTGGAGCTAACTGA	1644	False	NA	-11	True	ATTAAA	-17	NA	73295073	73077182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73263607_73263730_73266496_73266594_73294857
transcript_44188.known	chr15	-	4417	32	FSM	ENSMUSG00000022607.19	ENSMUST00000110036.11	4417	32	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_30	29.7827373894676	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCATTGCCTTTTTTTT	1677	False	NA	-4	True	AATAAA	-44	NA	73295040	73076950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73266496_73266594_73294857
transcript_44189.nic	chr15	-	4145	32	NIC	ENSMUSG00000022607.19	novel	4675	34	NA	NA	-27	-232	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	65.2443099372531	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACTGGAGCTAACTGA	1629	False	NA	-11	True	ATTAAA	-17	NA	73295088	73077182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73083835_73083845_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73294857
transcript_44199.nic	chr15	-	4136	31	NIC	ENSMUSG00000022607.19	novel	4417	32	NA	NA	-27	-232	combination_of_known_junctions	FALSE	canonical	1	6	junction_30	42.3057784337895	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACTGGAGCTAACTGA	1629	False	NA	-11	True	ATTAAA	-17	NA	73295088	73077182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73294857
transcript_44206.known	chr15	-	4580	2	FSM	ENSMUSG00000022607.19	ENSMUST00000227435.2	4580	2	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1743	False	NA	NA	False	NA	NA	NA	73294974	73262130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_73266594_73294857
transcript_44208.known	chr15	+	5299	23	FSM	ENSMUSG00000036661.15	ENSMUST00000043414.12	5299	23	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_14	7.34678205825995	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTGCTATGAATGGAT	NA	False	NA	NA	False	AATAAA	-32	NA	73384408	73444091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_73384697_73394078_73394356_73395287_73395404_73395987_73396122_73399764_73399877_73404667_73404788_73405109_73405329_73409138_73409261_73412541_73412698_73414568_73414666_73416206_73416311_73416794_73416995_73418969_73419492_73426905_73427166_73428196_73428368_73429430_73429561_73434173_73434282_73436345_73436486_73436864_73437023_73438881_73439016_73440270_73440375_73440456_73440595_73442602
transcript_44211.nic	chr15	+	2591	13	ISM	ENSMUSG00000036661.15	ENSMUST00000173292.8	5172	24	-105	24326	7	-9939	5prime_fragment	FALSE	canonical	3	9	junction_4	5.63409758129512	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACAGGCTTTGTTTTTTT	NA	False	NA	NA	False	TATAAA	-38	NA	73384415	73419622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_73384697_73394078_73394356_73395287_73395404_73395987_73396122_73399764_73399877_73404667_73404788_73405109_73405329_73409138_73409261_73412541_73412698_73414568_73414666_73416206_73416311_73416794_73416995_73418969
transcript_44212.nic	chr15	+	2765	13	ISM	ENSMUSG00000036661.15	ENSMUST00000173292.8	5172	24	-105	24152	7	-9765	5prime_fragment	FALSE	canonical	3	9	junction_4	5.63409758129512	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTATGTTGTATACAATA	NA	False	NA	NA	False	NA	NA	NA	73384415	73419796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_73384697_73394078_73394356_73395287_73395404_73395987_73396122_73399764_73399877_73404667_73404788_73405109_73405329_73409138_73409261_73412541_73412698_73414568_73414666_73416206_73416311_73416794_73416995_73418969
transcript_4422.known	chr1	+	3212	5	FSM	ENSMUSG00000026435.16	ENSMUST00000177943.8	3212	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.65698400254929	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTTTGTCTTTTCTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	131890704	131910707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131890791_131904455_131904851_131905150_131905937_131906485_131906752_131909028
transcript_44220.known	chr15	+	1680	6	FSM	ENSMUSG00000059895.14	ENSMUST00000230177.2	1680	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	34.6028900527109	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTGTGAAGAGTGTTAT	NA	False	NA	20	True	AATAAA	-14	NA	73596646	73629076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_73596698_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
transcript_44221.known	chr15	+	3260	6	FSM	ENSMUSG00000059895.14	ENSMUST00000053232.8	3260	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	28.8124972885031	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTGCTCTACTGCAAGT	NA	False	NA	NA	False	NA	NA	NA	73620222	73630615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_73620315_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
transcript_44229.known	chr15	-	390	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	429	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGCAAGAATGACTATT	NA	False	NA	NA	False	NA	NA	NA	73681745	73681355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_73681400_73681700
transcript_44232.known	chr15	-	3054	3	FSM	ENSMUSG00000022602.15	ENSMUST00000110009.4	3054	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	19	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTATGTGCCATTTCT	NA	False	NA	0	True	AATAAA	-14	NA	74544419	74540931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74541843_74542028_74542166_74542413
transcript_44233.known	chr15	-	3055	3	FSM	ENSMUSG00000022602.15	ENSMUST00000023268.14	3055	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	11.5	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTATGTGCCATTTCT	NA	False	NA	0	True	AATAAA	-14	NA	74544417	74540931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74541843_74542028_74542169_74542413
transcript_44234.known	chr15	-	5853	2	FSM	ENSMUSG00000046380.4	ENSMUST00000050234.4	5853	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCTTGTCATCTGTGAG	NA	False	NA	NA	False	AGTAAA	-41	NA	74581384	74574149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74579714_74581095
transcript_44235.known	chr15	+	860	3	FSM	ENSMUSG00000022598.7	ENSMUST00000023265.5	860	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAACCTGTGTCCTTAAG	NA	False	NA	NA	False	AATAAA	-19	NA	74586687	74588918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_74586756_74587869_74587978_74588234
transcript_44236.known	chr15	+	1784	2	FSM	ENSMUSG00000056665.3	ENSMUST00000070923.3	1784	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGCACCTGGCCTGTCTT	4640	False	NA	NA	False	NA	NA	NA	74593052	74596488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_74593657_74595308
transcript_44238.known	chr15	-	513	3	FSM	ENSMUSG00000022595.8	ENSMUST00000023260.5	513	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGTCTCGTTTCTGG	NA	False	NA	NA	False	AATACA	-19	NA	74606178	74604095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74604389_74604815_74604936_74606078
transcript_44239.known	chr15	-	4023	4	FSM	ENSMUSG00000022594.15	ENSMUST00000023259.15	4023	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTTTCTCTCATTCCT	9940	False	NA	-4	True	AATAAA	-18	NA	74624895	74619700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74623277_74623391_74623494_74623703_74623887_74624733
transcript_44241.known	chr15	-	706	1	FSM	ENSMUSG00000022594.15	ENSMUST00000189696.2	706	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	9962	False	NA	NA	False	NA	NA	NA	74624873	74624167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74624200_74624900
transcript_44242.known	chr15	-	791	4	FSM	ENSMUSG00000044678.12	ENSMUST00000060301.6	791	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	10.2740233382816	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	776	False	NA	-2	True	ATTAAA	-18	NA	74671835	74668722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74669121_74670383_74670483_74671267_74671345_74671618
transcript_44243.known	chr15	+	431	5	FSM	ENSMUSG00000022587.15	ENSMUST00000191145.7	431	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	290.246770007868	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAACTTCAGCGCAGCTG	8406	False	NA	NA	False	NA	NA	NA	74827520	74830459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_74827567_74829263_74829313_74829628_74829727_74830117_74830238_74830341
transcript_44244.known	chr15	+	924	4	FSM	ENSMUSG00000022587.15	ENSMUST00000190810.7	924	4	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	104.416899441081	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTGGGCCTTGGACTCC	7912	False	NA	NA	False	NA	NA	NA	74827026	74830504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_74827567_74829625_74829727_74830117_74830238_74830341
transcript_44245.nnic	chr15	+	741	4	NNC	ENSMUSG00000022587.15	novel	2281	4	NA	NA	-36	-2	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_3	242.10511950161	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGCTATGTCCTGGTT	8351	False	NA	25	True	AATAAA	-13	NA	74827465	74831178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_74827567_74829625_74829727_74830117_74830238_74830759
transcript_44246.known	chr15	+	1122	4	FSM	ENSMUSG00000022587.15	ENSMUST00000191436.7	1122	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	144.768781165001	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8387	False	NA	27	True	AATAAA	-15	NA	74827501	74831180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_74827567_74829628_74829727_74830117_74830238_74830341
transcript_44247.nnic	chr15	+	765	4	NNC	ENSMUSG00000022587.15	novel	1122	4	NA	NA	-63	-2	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_3	242.845629979211	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGCTATGTCCTGGTT	8324	False	NA	25	True	AATAAA	-13	NA	74827438	74831178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_74827567_74829628_74829727_74830117_74830238_74830759
transcript_44249.known	chr15	+	1211	3	FSM	ENSMUSG00000022587.15	ENSMUST00000188503.2	1211	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	177	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8402	False	NA	27	True	AATAAA	-15	NA	74827516	74831180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_74827567_74829628_74829727_74830117
transcript_44250.known	chr15	+	815	1	FSM	ENSMUSG00000022587.15	ENSMUST00000191439.2	815	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAAAC	8417	False	NA	NA	False	NA	NA	NA	74827531	74828346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_74827500_74828300
transcript_44251.known	chr15	-	862	4	FSM	ENSMUSG00000075602.11	ENSMUST00000186526.7	862	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.2738669184195	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATAAACCCTTTGTTCTCC	9611	False	NA	-25	True	NA	NA	NA	74869777	74866747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74867329_74868300_74868418_74869383_74869467_74869696
transcript_44252.known	chr15	-	853	4	FSM	ENSMUSG00000075602.11	ENSMUST00000187171.2	853	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	37.3452361977624	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTCCTGCAATGTTCC	9552	False	NA	-77	True	NA	NA	NA	74869836	74866799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74867329_74868300_74868418_74869383_74869482_74869727
transcript_44253.known	chr15	-	844	4	FSM	ENSMUSG00000079018.11	ENSMUST00000065408.16	844	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	24.2257897474755	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTTTTCTTATGCTA	9830	False	NA	NA	False	AATAAA	-23	NA	74920679	74916861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_74917460_74919201_74919319_74920290_74920374_74920633
transcript_44257.nnic	chr15	-	898	4	NNC	ENSMUSG00000068348.5	novel	408	3	NA	NA	-356	386	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	32.5678778348646	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	996	False	NA	-5	True	AATAAA	-16	NA	75110973	75107059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_75107668_75109440_75109558_75110548_75110631_75110882
transcript_44262.known	chr15	+	818	3	FSM	ENSMUSG00000022583.13	ENSMUST00000189654.2	818	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	3	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAAGATCTCAGTTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	75140550	75144084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75140649_75141628_75141746_75143481
transcript_44263.known	chr15	+	3540	3	FSM	ENSMUSG00000047003.16	ENSMUST00000161785.8	3540	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGCTCTGTTGGGTT	NA	False	NA	17	True	AGTAAA	-17	NA	75488527	75497149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75488670_75489892_75491541_75495399
transcript_44265.known	chr15	+	8270	3	FSM	ENSMUSG00000047003.16	ENSMUST00000054555.10	8270	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	23	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCTCCCAGTCTCTCT	NA	False	NA	NA	False	AATAAA	-27	NA	75488532	75501676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75488878_75489892_75491541_75495399
transcript_44266.known	chr15	+	1459	3	FSM	ENSMUSG00000099034.8	ENSMUST00000183928.8	1459	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATGGAGTCTGTGGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	75513977	75519286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75514361_75517197_75517294_75518306
transcript_4427.known	chr1	+	4433	5	FSM	ENSMUSG00000026436.16	ENSMUST00000086556.12	4433	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	2.9474565306379	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACCTTTCAGTGACTTCT	43	False	NA	NA	False	NA	NA	NA	131935344	131954186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_131935679_131942120_131942337_131945330_131946201_131947087_131947205_131951290
transcript_44271.known	chr15	-	1903	14	FSM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	11.6872458678823	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTGTCACTGTGAC	NA	False	NA	-7	True	AATAAA	-11	NA	75550649	75528883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
transcript_44274.known	chr15	+	3360	15	FSM	ENSMUSG00000022580.14	ENSMUST00000121137.9	3360	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.36578502309703	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCATTACATGATAATCAG	NA	False	NA	NA	False	AATAAA	-16	NA	75576128	75587334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75576324_75580019_75580136_75580837_75580967_75581085_75581162_75581862_75581941_75582303_75582429_75582514_75582682_75582836_75583031_75583402_75583560_75583639_75583748_75584105_75584301_75584850_75584928_75585067_75585215_75585298_75585461_75585900
transcript_44277.known	chr15	+	2605	14	FSM	ENSMUSG00000022580.14	ENSMUST00000124749.8	2605	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.64910390118809	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCTGAGTCGGGTACTG	NA	False	NA	NA	False	ATTAAA	-19	NA	75576156	75586259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75576324_75580019_75580136_75580837_75580967_75581085_75581162_75581862_75581941_75582303_75582429_75582514_75582682_75582846_75583031_75583402_75583560_75583639_75584301_75584850_75584928_75585067_75585215_75585298_75585461_75585900
transcript_44278.known	chr15	-	2739	1	FSM	ENSMUSG00000047591.6	ENSMUST00000062002.6	2739	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGTGTCTGTGGCTTT	NA	False	NA	-2	True	AATAAA	-30	NA	75620077	75617338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75617300_75620100
transcript_44279.nnic	chr15	-	3480	12	NNC	ENSMUSG00000075600.4	novel	3362	12	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	61.1939066809436	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCCTGTCTTGACTACC	NA	False	NA	-1	True	AATAAA	-19	NA	75713776	75626278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75711104_75712414_75713592
transcript_44280.nnic	chr15	-	2163	11	NIC	ENSMUSG00000075600.4	novel	3362	12	NA	NA	-110	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_10	63.9518568925094	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCCTGTCTTGACTACC	NA	False	NA	-1	True	AATAAA	-19	NA	75713874	75626278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75713698
transcript_44282.known	chr15	-	3362	12	FSM	ENSMUSG00000075600.4	ENSMUST00000100538.4	3362	12	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	44.618492997359	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCCTGTCTTGACTACC	NA	False	NA	-1	True	AATAAA	-19	NA	75713764	75626278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75711104_75712414_75713698
transcript_44284.known	chr15	+	1792	11	FSM	ENSMUSG00000022575.6	ENSMUST00000023238.6	1792	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	7.7614431647729	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTTGAGGGGTACTG	NA	False	NA	15	True	AATAAA	-20	NA	75734175	75739257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75734331_75735253_75735478_75736092_75736286_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
transcript_44294.nic	chr15	+	3187	9	NIC	ENSMUSG00000022575.6	novel	1792	11	NA	NA	-277	0	intron_retention	FALSE	canonical	3	41	junction_1	5.42995165724337	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCATAATGCTGTGTTGA	NA	False	NA	6	True	AATAAA	-11	NA	75733898	75739248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_75734331_75735253_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
transcript_44297.known	chr15	-	1898	13	FSM	ENSMUSG00000022574.8	ENSMUST00000023237.8	1898	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_8	7.1351049201972	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTGTCGTTAGTTCAC	NA	False	NA	NA	False	CATAAA	-30	NA	75766330	75762804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75762910_75762997_75763106_75763195_75763351_75763428_75763532_75763632_75763714_75763811_75763897_75764190_75764332_75764405_75764603_75764953_75765070_75765154_75765286_75765401_75765485_75765568_75765697_75765865
transcript_44299.known	chr15	-	2152	10	FSM	ENSMUSG00000055762.17	ENSMUST00000089681.12	2152	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	1485.53617539091	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	False	NA	-8	True	ATTAAA	-14	NA	75781184	75767338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75774527_75775658_75777734_75777750_75781093
transcript_443.known	chr1	+	6158	8	FSM	ENSMUSG00000057715.14	ENSMUST00000171690.9	6158	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	6.29868791001389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATTAACATTATGTTA	NA	False	NA	NA	False	AATAAA	-11	NA	11484328	11672035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374_11666542_11667188
transcript_44301.known	chr15	-	2312	8	FSM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	0	0	0	0	multi-exon	FALSE	canonical	3	2715	junction_5	241.1927842695	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCCGCTGCTCACCGACC	NA	False	NA	NA	False	NA	NA	NA	75781204	75766053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
transcript_44306.known	chr15	-	896	7	FSM	ENSMUSG00000055762.17	ENSMUST00000116440.9	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1385.14264207297	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781146	75767336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773102_75781093
transcript_44308.known	chr15	-	824	7	FSM	ENSMUSG00000055762.17	ENSMUST00000023235.13	824	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1073.10918984665	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGTGGTGGAGGATGA	NA	False	NA	NA	False	NA	NA	NA	75781178	75767652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773102_75781093
transcript_44312.known	chr15	-	704	5	FSM	ENSMUSG00000055762.17	ENSMUST00000151066.8	704	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1645.62410273428	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75772980_75773102_75781093
transcript_44314.known	chr15	-	2856	3	FSM	ENSMUSG00000055762.17	ENSMUST00000055220.7	2856	3	0	0	0	0	multi-exon	FALSE	canonical	3	2867	junction_1	91	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAAAGCTGGGTCAAG	NA	False	NA	NA	False	NA	NA	NA	75781168	75769954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75772612_75772980_75773105_75781093
transcript_44316.known	chr15	-	1339	6	FSM	ENSMUSG00000022571.10	ENSMUST00000053918.9	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	15.2525407719501	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTGGACTTTAGTAGAG	NA	False	NA	-13	True	NA	NA	NA	75793409	75788325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75788929_75789085_75789179_75790100_75790314_75790521_75790702_75791077_75791143_75793224
transcript_44318.nic	chr15	-	2378	4	NIC	ENSMUSG00000022571.10	novel	1339	6	NA	NA	40	0	intron_retention	FALSE	canonical	3	262	junction_2	6.23609564462324	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTGGACTTTAGTAGAG	NA	False	NA	-13	True	NA	NA	NA	75793369	75788325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_75790314_75790521_75790702_75791077_75791143_75793224
transcript_44321.known	chr15	-	1405	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229951.2	1405	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	184.382889661704	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8946	False	NA	-22	True	AATAAA	-22	NA	75801575	75796524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798591_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
transcript_44327.known	chr15	-	1270	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229085.2	1270	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	151.287309447951	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8894	False	NA	-22	True	AATAAA	-22	NA	75801627	75796524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800362_75800740_75800899_75801567
transcript_44328.known	chr15	-	1335	11	FSM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_10	87.2147349935778	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8919	False	NA	-29	True	AATAAA	-15	NA	75801602	75796531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
transcript_44329.known	chr15	-	1355	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	74.8304750753328	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8840	False	NA	-22	True	AATAAA	-22	NA	75801681	75796524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
transcript_44361.known	chr15	-	1319	11	FSM	ENSMUSG00000022570.8	ENSMUST00000230736.2	1319	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	183.950428104965	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8894	False	NA	-22	True	AATAAA	-22	NA	75801627	75796524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798291_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
transcript_44362.known	chr15	-	1223	10	FSM	ENSMUSG00000022570.8	ENSMUST00000229289.2	1223	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	159.308071761587	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8885	False	NA	-22	True	AATAAA	-22	NA	75801636	75796524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798973_75800740_75800899_75801567
transcript_44363.known	chr15	+	2486	2	FSM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTGTGTAATTGGCATA	NA	False	NA	10	True	AATAAA	-16	NA	75812800	75821249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75813009_75818971
transcript_44365.known	chr15	+	1803	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109966.8	1803	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	7.71722460186015	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGCCTGTTCTTCAGCC	NA	False	NA	11	True	AATAAA	-16	NA	75840971	75847598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75841254_75844930_75845058_75845390_75845505_75846318
transcript_44366.known	chr15	+	1644	4	FSM	ENSMUSG00000034429.16	ENSMUST00000147641.8	1644	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	16.3571255285137	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGAGAAGCCTGTTCTT	NA	False	NA	6	True	AATAAA	-11	NA	75841155	75847593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75841254_75844900_75845058_75845390_75845505_75846318
transcript_44367.known	chr15	+	1703	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109967.10	1703	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16.779617264871	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGAAGCCTGTTCTTCA	NA	False	NA	8	True	AATAAA	-13	NA	75841027	75847595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75841254_75844971_75845058_75845390_75845505_75846318
transcript_44368.known	chr15	+	2701	3	FSM	ENSMUSG00000034429.16	ENSMUST00000131496.2	2701	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGTATGTCTCCAGTACT	NA	False	NA	NA	False	AGTAAA	-17	NA	75841006	75847717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75841254_75844930_75845058_75845390
transcript_44370.known	chr15	-	2458	2	FSM	ENSMUSG00000098176.3	ENSMUST00000183130.3	2458	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTTGTCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	75854291	75851720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75853537_75853649
transcript_44371.known	chr15	-	2584	1	FSM	ENSMUSG00000098176.3	ENSMUST00000182172.2	2584	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTTGTCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	75854304	75851720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75851700_75854300
transcript_44372.known	chr15	+	1931	14	FSM	ENSMUSG00000063704.14	ENSMUST00000089669.6	1931	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	1.04909089976814	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGGATAAGCCATCTTTCA	1855	False	NA	NA	False	AATAAA	-17	NA	75865617	75871003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_75865778_75866693_75866793_75866920_75866951_75867082_75867174_75867675_75867807_75867889_75868054_75868223_75868364_75868959_75869018_75869418_75869557_75869676_75869783_75869907_75870113_75870219_75870324_75870398_75870528_75870627
transcript_44373.known	chr15	-	4534	5	FSM	ENSMUSG00000046761.14	ENSMUST00000170153.2	4534	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2.06155281280883	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAAGCCTCAGTAAATT	7422	False	NA	NA	False	AATAAA	-24	NA	75881347	75872941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75876599_75876789_75876915_75876983_75877149_75877949_75878412_75881222
transcript_44375.known	chr15	-	5545	37	FSM	ENSMUSG00000022568.18	ENSMUST00000109946.9	5545	37	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	94.8852580296751	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTTTTGTCCTGCC	NA	False	NA	-1	True	AATAAA	-21	NA	75941633	75919006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75919387_75919469_75919522_75919770_75919846_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
transcript_44376.nic	chr15	-	5512	37	NIC	ENSMUSG00000022568.18	novel	5599	38	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_9	77.9983529028374	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTTTTGTCCTGCC	NA	False	NA	-1	True	AATAAA	-21	NA	75941591	75919006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921305_75921390_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
transcript_44378.known	chr15	-	5440	36	FSM	ENSMUSG00000022568.18	ENSMUST00000063747.12	5440	36	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_30	52.1302607094253	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTTTTGTCCTGCC	NA	False	NA	-1	True	AATAAA	-21	NA	75941603	75919006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
transcript_44389.known	chr15	-	1881	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952762	75942030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
transcript_44395.known	chr15	-	1821	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	1007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952761	75942038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
transcript_444.known	chr1	+	6451	7	FSM	ENSMUSG00000057715.14	ENSMUST00000135014.8	6451	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	4.57043640026736	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATTCCTTTACATCTTG	NA	False	NA	NA	False	ATTAAA	-17	NA	11484492	11671845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374
transcript_44414.known	chr15	-	1008	1	FSM	ENSMUSG00000002524.18	ENSMUST00000228459.2	1008	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAATTCCTGC	NA	False	NA	NA	False	NA	NA	NA	75952731	75951723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75951700_75952700
transcript_44415.known	chr15	-	1825	11	FSM	ENSMUSG00000002524.18	ENSMUST00000227316.2	1825	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	435.234006024345	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952719	75942038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952652
transcript_44416.known	chr15	-	3192	18	FSM	ENSMUSG00000075590.5	ENSMUST00000228366.3	3192	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.12091251497882	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGATGTACTTTTTTGG	NA	False	NA	77	True	ATTAAA	-16	NA	75963476	75957366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75958994_75959079_75959136_75959221_75959286_75959369_75959424_75960139_75960276_75960358_75960410_75960498_75960602_75960713_75960847_75961285_75961382_75961458_75961515_75961596_75961681_75961750_75961775_75961900_75961996_75962094_75962136_75962301_75962392_75962486_75962589_75962656_75962780_75963219
transcript_44419.known	chr15	-	12332	3	FSM	ENSMUSG00000118671.1	ENSMUST00000239552.1	12332	3	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATTTGCTCTGCTGTCGC	9937	False	NA	0	True	AATAAA	-24	NA	76004395	75973329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_75976552_75988902_75996926_76003308
transcript_4442.known	chr1	-	4355	16	FSM	ENSMUSG00000026437.12	ENSMUST00000027697.12	4355	16	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_4	13.6323145503616	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTGAAGTGACTGGTCAC	597	False	NA	NA	False	TATAAA	-16	NA	132067422	132039974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132042709_132043202_132043281_132043599_132043691_132044184_132044228_132044333_132044440_132044621_132044720_132045219_132045341_132045487_132045612_132046258_132046322_132046587_132046683_132046837_132046953_132047705_132047763_132049185_132049312_132049774_132049855_132050049_132050199_132067147
transcript_44422.nic	chr15	-	2242	18	NIC	ENSMUSG00000022565.16	novel	2219	19	NA	NA	-382	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	21.1255924754655	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCAGCGTTTCCTCCT	9388	False	NA	NA	False	AAGAAA	-13	NA	76117156	76072663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078758_76078774_76078950_76079013_76115373_76115579_76116990
transcript_44424.nic	chr15	-	2202	17	NIC	ENSMUSG00000022565.16	novel	2158	17	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	18.3605385269605	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCAGCGTTTCCTCCT	984	False	NA	NA	False	AAGAAA	-13	NA	76079954	76072663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078758_76078774_76078950_76079013_76079623
transcript_44425.nic	chr15	-	2139	17	NIC	ENSMUSG00000022565.16	novel	2158	17	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	20.0588976516657	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCAGCGTTTCCTCCT	9265	False	NA	NA	False	AAGAAA	-13	NA	76082447	76072663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078758_76078774_76078950_76079013_76082179
transcript_44427.nic	chr15	-	2047	17	NIC	ENSMUSG00000022565.16	novel	2158	17	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	17.9686141299211	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCAGCGTTTCCTCCT	NA	False	NA	NA	False	AAGAAA	-13	NA	76093340	76072663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078758_76078774_76078950_76079013_76093164
transcript_44428.nic	chr15	-	2056	17	NIC	ENSMUSG00000022565.16	novel	2158	17	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	18.9225394701663	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCAGCGTTTCCTCCT	5562	False	NA	NA	False	AAGAAA	-13	NA	76113742	76072663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078758_76078774_76078950_76079013_76113557
transcript_44432.known	chr15	-	3284	11	FSM	ENSMUSG00000063268.13	ENSMUST00000075689.7	3284	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.74355957741627	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAGAAGGACCGGCTGGA	NA	False	NA	NA	False	AATAAA	-16	NA	76127641	76117202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76117807_76117897_76118073_76124248_76124383_76124486_76125132_76125355_76125429_76125525_76125748_76125857_76126523_76126602_76126840_76126931_76127187_76127263_76127443_76127546
transcript_44435.known	chr15	+	1725	7	FSM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	10.0567832276971	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTGCTTCTCCTTGTCT	NA	False	NA	13	True	AATAAA	-14	NA	76130974	76134104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76131101_76132050_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
transcript_44436.nic	chr15	+	1962	7	NIC	ENSMUSG00000022564.8	novel	1725	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	13	junction_1	29.8533452434099	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTGCTTCTCCTTGTCT	NA	False	NA	13	True	AATAAA	-14	NA	76130948	76134104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_76131101_76131839_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
transcript_44440.known	chr15	-	3970	27	FSM	ENSMUSG00000022562.16	ENSMUST00000023222.13	3970	27	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_11	7.05305339056621	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTATTGGGTTATTGGGC	9183	False	NA	-19	True	AATAAA	-17	NA	76191445	76180802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76180982_76181120_76181219_76181316_76181478_76181558_76181717_76181818_76181969_76182105_76182241_76182335_76182483_76182586_76182772_76185025_76185201_76185292_76185395_76185486_76185648_76186245_76186398_76186581_76186695_76186830_76186970_76187055_76187194_76187377_76187549_76187635_76187749_76188286_76188553_76188665_76188734_76188833_76188973_76189092_76189259_76189339_76189536_76189647_76189772_76189860_76189961_76190398_76190591_76190674_76190899_76191427
transcript_44444.known	chr15	+	1728	3	FSM	ENSMUSG00000034259.9	ENSMUST00000230512.2	1728	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	318	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACTGGACTAATGTCTT	947	False	NA	4	True	NA	NA	NA	76211664	76214873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76211868_76213229_76213437_76213555
transcript_44449.known	chr15	+	1796	3	FSM	ENSMUSG00000034259.9	ENSMUST00000059045.8	1796	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	330.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGACTAATGTCTTCTTT	879	False	NA	8	True	NA	NA	NA	76211596	76214877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76211864_76213229_76213437_76213555
transcript_44456.known	chr15	+	2107	12	FSM	ENSMUSG00000022561.14	ENSMUST00000023221.13	2107	12	0	0	0	0	multi-exon	FALSE	non_canonical	3	197	junction_6	31.5777932223483	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGGCCCGCTGTCTTCT	4713	False	NA	24	True	AATAAA	-27	NA	76215430	76219107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
transcript_44465.nic	chr15	+	2182	11	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-7	0	intron_retention	TRUE	non_canonical	3	245	junction_2	20.9035882087263	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGGGATCCTGGCCCG	4706	False	NA	15	True	AATAAA	-18	NA	76215423	76219098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
transcript_44487.known	chr15	+	2237	12	FSM	ENSMUSG00000022561.14	ENSMUST00000164972.8	2237	12	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	83.2816589096531	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGGGATCCTGGCCCG	4826	False	NA	15	True	AATAAA	-18	NA	76215543	76219098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76215664_76215843_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
transcript_44492.known	chr15	+	1520	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	0	0	0	0	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	4860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCCATGGTGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	76227722	76230460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
transcript_44507.known	chr15	+	1791	6	FSM	ENSMUSG00000022551.9	ENSMUST00000229710.2	1791	6	0	0	0	0	multi-exon	FALSE	canonical	3	4240	junction_4	274.648866737149	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACATTTTAGCTGGTCA	NA	False	NA	25	True	AATAAA	-15	NA	76227732	76230132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
transcript_44508.known	chr15	+	737	5	FSM	ENSMUSG00000022551.9	ENSMUST00000229013.2	737	5	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	2002.74254149154	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCCAGGCCATTGGCATG	NA	False	NA	NA	False	NA	NA	NA	76227760	76229353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76227893_76228479_76228699_76228781_76228909_76229011_76229170_76229252
transcript_44511.known	chr15	-	1734	9	FSM	ENSMUSG00000022552.17	ENSMUST00000023211.16	1734	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	14.1862609591111	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8113	False	NA	-3	True	ATTAAA	-16	NA	76235311	76231239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
transcript_44513.nic	chr15	-	1481	8	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	47.1584389833563	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8191	False	NA	-3	True	ATTAAA	-16	NA	76235233	76231239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234680
transcript_44518.known	chr15	-	1669	6	FSM	ENSMUSG00000022552.17	ENSMUST00000144816.9	1669	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	53.2450936706848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTTCTGTTCTTGG	8149	False	NA	-4	True	ATTAAA	-15	NA	76235275	76231240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76231386_76231458_76231588_76231681_76232205_76232285_76232428_76232500_76232636_76234680
transcript_4452.nic	chr1	-	2952	15	NIC	ENSMUSG00000026437.12	novel	4355	16	NA	NA	-57	932	intron_retention	FALSE	canonical	2	6	junction_3	40.998257802706	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTGAGCAGTCTCATTCA	540	False	NA	-2	True	AATATA	-23	NA	132067479	132041391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_132042709_132043202_132043281_132043599_132043691_132044333_132044440_132044621_132044720_132045219_132045341_132045487_132045612_132046258_132046322_132046587_132046683_132046837_132046953_132047705_132047763_132049185_132049312_132049774_132049855_132050049_132050199_132067147
transcript_44523.known	chr15	+	1743	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	277.590075471008	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAACCTGGGAGTTTG	NA	False	NA	23	True	AATAAA	-15	NA	76235493	76238572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
transcript_44528.known	chr15	+	1686	8	FSM	ENSMUSG00000022553.17	ENSMUST00000023212.15	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	86.5157765487702	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235505	76238573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76235860_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
transcript_44530.known	chr15	+	1651	8	FSM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	163.413086179455	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235493	76238573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
transcript_44542.known	chr15	+	798	3	FSM	ENSMUSG00000022553.17	ENSMUST00000162871.2	798	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	231.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTGGGTAAGGATGAACAG	NA	False	NA	NA	False	NA	NA	NA	76235508	76237206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76235860_76236666_76236753_76236845
transcript_44543.known	chr15	+	6581	24	FSM	ENSMUSG00000109179.3	ENSMUST00000208833.3	6581	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.20156328716038	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGAAAAGAAGCCG	NA	False	NA	NA	False	NA	NA	NA	76238631	76249401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76238874_76239054_76239192_76239332_76239962_76240077_76240200_76240331_76241032_76241123_76241267_76241356_76241594_76241668_76241760_76241897_76242031_76242107_76242230_76242455_76242517_76242680_76242831_76242909_76243171_76243257_76243381_76243456_76243541_76244499_76244629_76244711_76244928_76245006_76245187_76245312_76245511_76245610_76245733_76245816_76245974_76246865_76247477_76247561_76247624_76247730
transcript_44546.known	chr15	+	1993	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	14.4858551697855	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGACTCTCCTGCAAGAG	3544	False	NA	NA	False	NA	NA	NA	76253097	76255637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
transcript_44547.nnic	chr15	+	1915	6	NNC	ENSMUSG00000022554.8	novel	1993	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	42.1454623892063	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGACTCTCCTGCAAGAG	3541	False	NA	NA	False	NA	NA	NA	76253094	76255637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_76253741_76253851_76253901_76254055_76254155_76254361_76254454_76254531_76254655_76254731
transcript_44548.nic	chr15	+	1967	6	NIC	ENSMUSG00000022554.8	novel	1993	6	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	27.9184526791869	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGACTCTCCTGCAAGAG	3541	False	NA	NA	False	NA	NA	NA	76253094	76255637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_76253741_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
transcript_44567.known	chr15	+	5268	44	FSM	ENSMUSG00000022558.17	ENSMUST00000096385.11	5268	44	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_5	19.8740490552834	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGTGACATTGTATCAAT	NA	False	NA	10	True	AATAAA	-16	NA	76264712	76337238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76264777_76274230_76274328_76276580_76276660_76278002_76278149_76285775_76285908_76286332_76286496_76286682_76286782_76292091_76292244_76292587_76292729_76293082_76293176_76297101_76297181_76298418_76298533_76305339_76305414_76307915_76308036_76311308_76311417_76311711_76311857_76312101_76312143_76312443_76312586_76312848_76312902_76313352_76313461_76313987_76314108_76314376_76314500_76316348_76316496_76316571_76316599_76317473_76317597_76317737_76317818_76318026_76318142_76318262_76318359_76318882_76318988_76319969_76320106_76320204_76320318_76321437_76321591_76327449_76327605_76330715_76330882_76331368_76331566_76334285_76334424_76334838_76334954_76335261_76335409_76335546_76335736_76336004_76336161_76336243_76336379_76336446_76336550_76336627_76336694_76337025
transcript_44582.known	chr15	-	2491	16	FSM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_11	43.9047453775405	1313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGCTGGCAGCAGAGT	NA	False	NA	-34	True	AATAAA	-20	NA	76361477	76337188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
transcript_446.known	chr1	+	1816	11	FSM	ENSMUSG00000057715.14	ENSMUST00000141512.8	1816	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	10.5834776893042	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGCTTTAGTTCCTCA	NA	False	NA	NA	False	AATAAA	-11	NA	11484335	12003964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658796_11666374_11666542_11818188_11818316_11868704_11868791_11900038_11900116_12003767
transcript_44613.known	chr15	+	1772	10	FSM	ENSMUSG00000022558.17	ENSMUST00000162204.8	1772	10	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_5	9.94428926011753	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	76264712	76293781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76264777_76274230_76274328_76276580_76276660_76278002_76278149_76285775_76285908_76286332_76286496_76286682_76286782_76292091_76292244_76292587_76292729_76293082
transcript_44618.nic	chr15	+	2173	14	NIC	ENSMUSG00000022556.12	novel	2102	13	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	103.530403161092	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAGAGTCCCCTTTAAC	7089	False	NA	30	True	CATAAA	-19	NA	76361589	76385122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76383331_76383416_76384147_76384254_76384330_76384397_76384466_76384537_76384616
transcript_4462.known	chr1	-	1705	17	FSM	ENSMUSG00000026437.12	ENSMUST00000112362.3	1705	17	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_16	39.8649575912229	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACAGCTCTGTGGTGGCC	676	False	NA	NA	False	NA	NA	NA	132067343	132042501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132042709_132043202_132043281_132043599_132043691_132044184_132044228_132044333_132044440_132044621_132044720_132045219_132045341_132045487_132045612_132046258_132046322_132046587_132046683_132046837_132046953_132047705_132047763_132049185_132049312_132049774_132049855_132050049_132050199_132067147_132067185_132067228
transcript_44628.known	chr15	+	2102	13	FSM	ENSMUSG00000022556.12	ENSMUST00000228371.2	2102	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	120.605071756263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7144	False	NA	12	True	NA	NA	NA	76361644	76385172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76383331_76383416_76384147_76384254_76384466_76384537_76384616
transcript_44629.known	chr15	+	2084	13	FSM	ENSMUSG00000022556.12	ENSMUST00000227478.2	2084	13	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_11	40.4687808343941	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7144	False	NA	12	True	NA	NA	NA	76361644	76385172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
transcript_4463.known	chr1	+	4269	5	FSM	ENSMUSG00000042115.5	ENSMUST00000046071.5	4269	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.707106781186548	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAAGAGTCTAGACTTC	33	False	NA	NA	False	NA	NA	NA	132226363	132235095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_132227391_132230262_132230428_132230677_132230894_132231466_132231569_132232336
transcript_44637.nic	chr15	+	2211	12	NIC	ENSMUSG00000022556.12	novel	2084	13	NA	NA	-84	0	intron_retention	FALSE	canonical	3	226	junction_10	34.6941774713456	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAGAGTCCCCTTTAAC	7037	False	NA	30	True	CATAAA	-19	NA	76361537	76385122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384537_76384616
transcript_44639.known	chr15	+	2018	12	FSM	ENSMUSG00000022556.12	ENSMUST00000072838.6	2018	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	77.0148638653497	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7144	False	NA	12	True	NA	NA	NA	76361644	76385172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384466_76384537_76384616
transcript_44652.known	chr15	+	1965	11	FSM	ENSMUSG00000022556.12	ENSMUST00000229363.2	1965	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	80.1283969638729	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATACA	7273	False	NA	8	True	NA	NA	NA	76361773	76385168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384466
transcript_4466.known	chr1	+	2936	8	FSM	ENSMUSG00000009772.16	ENSMUST00000072177.14	2936	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	17.0784504387182	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTCTTGTTCACTTTGG	NA	False	NA	NA	False	ATTAAA	-24	NA	132243863	132261031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_132244211_132252690_132252812_132253943_132253968_132255434_132255587_132255868_132255935_132257695_132257816_132258296_132258430_132259058
transcript_44665.known	chr15	+	2002	11	FSM	ENSMUSG00000022556.12	ENSMUST00000228868.2	2002	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	91.0601998679994	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAGAGTCCCCTTTAAC	7121	False	NA	30	True	CATAAA	-19	NA	76361621	76385122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384537_76384616
transcript_4467.known	chr1	-	3410	5	FSM	ENSMUSG00000042066.17	ENSMUST00000045473.16	3410	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	2.38484800354236	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTGAGGTCTGCTGA	NA	False	NA	0	True	AATAAA	-23	NA	132319019	132284052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132285556_132286640_132286777_132288012_132288954_132308394_132308920_132318714
transcript_44686.known	chr15	+	3133	1	FSM	ENSMUSG00000022556.12	ENSMUST00000228388.2	3133	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAGAAAAAAA	7148	False	NA	NA	False	GGGGCT	-35	NA	76361648	76364781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76361600_76364800
transcript_44687.known	chr15	-	1888	17	FSM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_16	22.0368122411115	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGGGGTTGTGGAGGC	NA	False	NA	-5	True	AATAAA	-18	NA	76396151	76386214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387272_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
transcript_4469.known	chr1	+	6282	13	FSM	ENSMUSG00000042046.16	ENSMUST00000045110.14	6282	13	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_10	4.74561200830128	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCGTTGCCTGTTTGGCTT	2925	False	NA	12	True	AATAAA	-17	NA	132345292	132394696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_132345609_132361836_132362226_132377049_132377714_132380824_132381058_132381798_132381883_132382969_132383147_132383597_132383728_132384062_132384220_132384606_132384740_132386054_132386169_132387613_132387729_132390650_132390786_132391061
transcript_44692.known	chr15	-	1710	9	FSM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_8	22.8988946239769	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTATATGT	NA	False	NA	NA	False	AATAAA	-21	NA	76422935	76419920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422524
transcript_44695.known	chr15	-	1953	8	FSM	ENSMUSG00000022559.9	ENSMUST00000230513.2	1953	8	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_7	19.025224930956	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTATTTATTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	76422935	76419926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116
transcript_44696.known	chr15	-	2091	7	FSM	ENSMUSG00000022559.9	ENSMUST00000229813.2	2091	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_6	11.5325625946708	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGATTTATTTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	76422946	76419929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922
transcript_44697.nic	chr15	-	2115	7	NIC	ENSMUSG00000022559.9	novel	1710	9	NA	NA	-54	0	intron_retention	FALSE	canonical	3	133	junction_6	20.4565936123838	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTATATGT	NA	False	NA	NA	False	AATAAA	-21	NA	76423000	76419920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421621_76421922_76421987_76422116
transcript_447.known	chr1	+	1499	4	FSM	ENSMUSG00000057715.14	ENSMUST00000142117.3	1499	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	11.4697670227235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTTGCTTCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	11484335	11607931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11607238
transcript_44703.nic	chr15	-	2223	6	NIC	ENSMUSG00000022559.9	novel	1710	9	NA	NA	-32	0	intron_retention	FALSE	canonical	3	158	junction_5	12.595237195067	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTATATGT	NA	False	NA	NA	False	AATAAA	-21	NA	76422978	76419920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421621_76421922
transcript_44719.known	chr15	+	5289	5	FSM	ENSMUSG00000022560.10	ENSMUST00000023220.10	5289	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	5.2618912949623	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCCTGTACTCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	76423031	76428808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76423396_76423582_76423803_76423893_76424780_76424871_76424996_76425113
transcript_44720.nic	chr15	+	2222	4	ISM	ENSMUSG00000022560.10	ENSMUST00000023220.10	5289	5	-33	3218	-33	-740	intron_retention	FALSE	canonical	3	120	junction_1	1.69967317119759	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGTTAATCCCATGAG	NA	False	NA	5	True	AATAAA	-15	NA	76422998	76425590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_76423396_76423582_76423803_76423893_76424780_76424871
transcript_44721.nic	chr15	+	2163	4	NIC	ENSMUSG00000022560.10	novel	5289	5	NA	NA	0	-740	intron_retention	FALSE	canonical	3	110	junction_3	4.96655480858378	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGTTAATCCCATGAG	NA	False	NA	5	True	AATAAA	-15	NA	76423031	76425590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_76423396_76423582_76423803_76423893_76424996_76425113
transcript_44722.known	chr15	+	2889	3	FSM	ENSMUSG00000022560.10	ENSMUST00000230994.2	2889	3	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	0.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCACAATGTGTCCCTT	NA	False	NA	NA	False	AATAAA	-20	NA	76423163	76426330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76423396_76423582_76423803_76423893
transcript_44731.known	chr15	-	4518	37	FSM	ENSMUSG00000034022.9	ENSMUST00000071898.7	4518	37	0	0	0	0	multi-exon	TRUE	canonical	3	484	junction_25	49.8187687746518	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTGGTCATTGTGT	NA	False	NA	-2	True	TATAAA	-27	NA	76491791	76480005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
transcript_44737.known	chr15	-	4410	37	FSM	ENSMUSG00000034022.9	ENSMUST00000230157.2	4410	37	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	98.8724822532214	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGAGTGTGTGGTCATTG	NA	False	NA	-5	True	TATAAA	-24	NA	76491711	76480008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76480108_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
transcript_44815.known	chr15	+	2026	15	FSM	ENSMUSG00000022550.19	ENSMUST00000161732.8	2026	15	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_4	36.3298381892508	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAATCGTTTTCTTTG	3103	False	NA	NA	False	NA	NA	NA	76460558	76480008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477635_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
transcript_44823.known	chr15	+	2058	14	FSM	ENSMUSG00000022550.19	ENSMUST00000161311.8	2058	14	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_9	18.5325557142499	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAATCGTTTTCTTTGT	3156	False	NA	NA	False	NA	NA	NA	76460611	76480009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
transcript_4483.nic	chr1	+	3628	14	NIC	ENSMUSG00000026439.15	novel	716	5	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	98.5986425245921	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	9	True	AATAAA	-18	NA	132405315	132433397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_132405593_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
transcript_4484.known	chr1	+	1923	1	FSM	ENSMUSG00000026439.15	ENSMUST00000187834.2	1923	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCACAAGTATACATGC	NA	False	NA	5	True	AATAAA	-14	NA	132431470	132433393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_132431500_132433400
transcript_4485.known	chr1	+	2856	14	FSM	ENSMUSG00000026439.15	ENSMUST00000190997.7	2856	14	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_13	83.2346081867393	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTACAATAAGTGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	132405104	132432627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
transcript_44882.known	chr15	+	747	4	FSM	ENSMUSG00000022550.19	ENSMUST00000159949.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	73.1619208787376	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTTGTTGTTGTCCTTT	3149	False	NA	NA	False	NA	NA	NA	76460604	76476023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76475620
transcript_44883.known	chr15	+	843	3	FSM	ENSMUSG00000022550.19	ENSMUST00000160296.2	843	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	8.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTGGATCCATCTTCT	3157	False	NA	NA	False	NA	NA	NA	76460612	76473925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76460695_76471957_76472062_76473268
transcript_44885.known	chr15	-	2750	12	FSM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_11	41.2272476696326	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAACTACACTGTCTT	8130	False	NA	-10	True	AATAAA	-13	NA	76501584	76496590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
transcript_44887.nnic	chr15	-	2631	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	-158	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_10	121.107555503362	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	7972	False	NA	-2	True	AATAAA	-21	NA	76501742	76496582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500772
transcript_44891.known	chr15	-	2063	11	FSM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	124.203099800287	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	-2	True	AATAAA	-21	NA	76501048	76496582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
transcript_44893.nnic	chr15	-	1798	10	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	-57	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_9	124.308258816044	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8609	False	NA	-2	True	AATAAA	-21	NA	76501105	76496582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76500772
transcript_449.known	chr1	+	5598	22	FSM	ENSMUSG00000016918.16	ENSMUST00000177608.8	5598	22	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	9.77989051592099	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCGTTTCAGAGAAATGA	NA	False	NA	NA	False	AATAAA	-17	NA	12762500	12931416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_12762909_12798817_12798913_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
transcript_44909.known	chr15	-	4235	26	FSM	ENSMUSG00000059323.15	ENSMUST00000168185.8	4235	26	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_21	25.6881606970994	400	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTCAGCTCTCTGCG	NA	False	NA	-1	True	AATAAA	-16	NA	76524158	76510437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
transcript_4491.nic	chr1	-	3187	21	NIC	ENSMUSG00000026442.15	novel	3049	20	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_20	5.90148286450109	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGCCAATTTTGTCATT	NA	False	NA	NA	False	AAGAAA	-6	NA	132669564	132527572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_132527953_132529708_132529932_132531535_132531607_132532778_132532977_132533221_132533324_132534740_132534786_132536120_132536246_132537494_132537643_132538048_132538216_132538512_132538625_132539267_132539412_132547126_132547259_132548662_132548848_132549249_132549362_132559422_132559594_132561905_132562029_132562361_132562559_132564723_132564830_132570415_132570597_132593216_132593326_132669408
transcript_4494.known	chr1	-	3049	20	FSM	ENSMUSG00000026442.15	ENSMUST00000188307.2	3049	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	6.48544075821026	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGCCAATTTTGTCATT	NA	False	NA	NA	False	AAGAAA	-6	NA	132669535	132527572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132527953_132529708_132529932_132531535_132531607_132532778_132532977_132533221_132533324_132534740_132534786_132536120_132536246_132537494_132537643_132538048_132538216_132538512_132538625_132539267_132539412_132547126_132547259_132548662_132548848_132549249_132549362_132559422_132559594_132561905_132562029_132562361_132562559_132564723_132564830_132570415_132570597_132669408
transcript_44956.known	chr15	-	911	10	FSM	ENSMUSG00000115987.2	ENSMUST00000078803.5	911	10	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_9	85.8889607589177	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9603	False	NA	-25	True	AATAAA	-17	NA	76510274	76506308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
transcript_44958.known	chr15	-	941	10	FSM	ENSMUSG00000115987.2	ENSMUST00000229019.2	941	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	311.796586112021	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9671	False	NA	-25	True	AATAAA	-17	NA	76510206	76506308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508919_76509333_76509406_76510188
transcript_4496.known	chr1	+	3428	2	FSM	ENSMUSG00000026443.4	ENSMUST00000027706.4	3428	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTTGAGTGCTGGGTAT	NA	False	NA	22	True	AATAAA	-35	NA	132808010	132867743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_132808414_132864718
transcript_44970.known	chr15	+	3218	18	FSM	ENSMUSG00000004187.12	ENSMUST00000004294.12	3218	18	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	4.19342045191097	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTGGTGTTTTAA	5718	False	NA	NA	False	ATTAAA	-19	NA	76544765	76552396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76544966_76545205_76545288_76545435_76545585_76545679_76545819_76545926_76546073_76546145_76546212_76546300_76546430_76546794_76546873_76546981_76547097_76547173_76547284_76548270_76548380_76548481_76548646_76550228_76550334_76550428_76550551_76550646_76550771_76550862_76550993_76551074_76551332_76551403
transcript_44973.known	chr15	-	2933	3	FSM	ENSMUSG00000053929.18	ENSMUST00000229552.2	2933	3	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	231.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGTATCCTGTCTGTG	3722	False	NA	-10	True	AATAAA	-15	NA	76535028	76531135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76531969_76532298_76532511_76533140
transcript_44974.known	chr15	-	1110	3	FSM	ENSMUSG00000053929.18	ENSMUST00000177359.2	1110	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	30	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTATGGAATTTGTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	76544317	76542339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76543066_76543418_76543640_76544154
transcript_44976.known	chr15	-	1168	3	FSM	ENSMUSG00000053929.18	ENSMUST00000066677.10	1168	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	38.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTATGGAATTTGTTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	76544308	76542338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76543066_76543418_76543706_76544154
transcript_44977.known	chr15	-	507	3	FSM	ENSMUSG00000033837.6	ENSMUST00000230207.2	507	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	159.5	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCAGCATCAAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	76554002	76553124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76553341_76553428_76553522_76553804
transcript_44984.known	chr15	+	2827	12	FSM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_1	32.5360575565374	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	22	True	GATAAA	-17	NA	76555846	76579119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76555963_76573527_76573695_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
transcript_44988.known	chr15	+	2692	11	FSM	ENSMUSG00000033819.17	ENSMUST00000037551.15	2692	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	16.1864140562386	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	22	True	GATAAA	-17	NA	76555814	76579119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76555963_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
transcript_4499.known	chr1	-	3490	12	FSM	ENSMUSG00000054387.14	ENSMUST00000067429.10	3490	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	148.060854140876	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACCACATGGTCAGG	NA	False	NA	NA	False	NA	NA	NA	132953086	132917582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132947091_132947170_132952985
transcript_45.known	ERCC-00136	+	1025	1	FSM	ERCC-00136A	EF011063	1025	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1258	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00136_+_0_1000
transcript_4501.known	chr1	-	2010	11	FSM	ENSMUSG00000054387.14	ENSMUST00000185398.7	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	121.196699625031	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGGACATATCCAGTCA	NA	False	NA	69	True	ATTAAA	-17	NA	132953092	132918964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932431_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
transcript_45010.known	chr15	+	982	6	FSM	ENSMUSG00000022546.6	ENSMUST00000229140.2	982	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	4.40908153700972	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGTGGCTGCCTGGGT	5989	False	NA	2	True	AATAAA	-18	NA	76582410	76583848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76582583_76582655_76582793_76582914_76583090_76583195_76583352_76583435_76583549_76583619
transcript_45013.known	chr15	-	3896	22	FSM	ENSMUSG00000033762.9	ENSMUST00000036852.9	3896	22	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_12	16.3579572820053	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTTCTGGTAACATAG	NA	False	NA	-5	True	AATAAA	-19	NA	76594733	76587752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76588066_76588153_76588263_76588442_76588597_76588675_76588857_76588933_76589104_76589186_76589317_76589390_76589644_76589793_76590057_76590145_76590288_76590358_76590539_76590616_76590806_76590882_76590967_76591236_76591374_76591451_76591545_76592324_76592424_76592526_76592635_76592734_76592862_76593001_76593752_76593967_76594109_76594300_76594399_76594477_76594512_76594592
transcript_45015.known	chr15	-	3592	22	FSM	ENSMUSG00000033762.9	ENSMUST00000230724.2	3592	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	23.9402127569509	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTATGTGCTTTCTGGT	NA	False	NA	-12	True	AATAAA	-12	NA	76594748	76587759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76588066_76588153_76588263_76588442_76588597_76588675_76588857_76588933_76589104_76589186_76589644_76589793_76590057_76590145_76590288_76590358_76590539_76590616_76590806_76590882_76590967_76591236_76591374_76591451_76591545_76592324_76592427_76592526_76592635_76592734_76592862_76593001_76593152_76593540_76593752_76593967_76594109_76594300_76594399_76594477_76594512_76594592
transcript_4502.known	chr1	-	7105	11	FSM	ENSMUSG00000054387.14	ENSMUST00000188090.7	7105	11	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_6	81.9383304687129	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTTGTCATTATTGG	NA	False	NA	-5	True	ATTAAA	-15	NA	132953154	132913957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
transcript_45023.known	chr15	+	2246	5	FSM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	6.01560470775798	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGAGTCTGCCCAGGTT	9243	False	NA	NA	False	NA	NA	NA	76585664	76588439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587462
transcript_45027.known	chr15	+	299	2	FSM	ENSMUSG00000019080.9	ENSMUST00000230468.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCTGGGACACAGGAAAT	NA	False	NA	4	True	AATAAA	-17	NA	76587298	76587690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76587384_76587476
transcript_45029.nic	chr15	+	2388	5	NIC	ENSMUSG00000033728.15	novel	2832	4	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	41.7282877674126	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTATGGGCTTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	76594809	76599235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_76595128_76595555_76595731_76597066_76597421_76597600_76598186_76598279
transcript_4503.known	chr1	-	1914	11	FSM	ENSMUSG00000054387.14	ENSMUST00000067398.13	1914	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_9	94.8116026654966	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTATTCACTTCCAAA	NA	False	NA	-58	True	AATACA	-15	NA	132953094	132919091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
transcript_45030.nic	chr15	+	2444	5	NIC	ENSMUSG00000033728.15	novel	2286	6	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	41.7282877674126	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAGTGTTGCTTTATCA	NA	False	NA	NA	False	NA	NA	NA	76594809	76599291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_76595128_76595555_76595731_76597066_76597421_76597600_76598186_76598279
transcript_45038.known	chr15	+	4849	4	FSM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	34.1792659696229	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGTTATTCTGGAATCA	NA	False	NA	NA	False	AATAAA	-17	NA	76594837	76601899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76595128_76597066_76597421_76597600_76598186_76598279
transcript_45041.known	chr15	+	2093	4	FSM	ENSMUSG00000033728.15	ENSMUST00000036423.15	2093	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	47.8957200593122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTATGGGCTTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	76594838	76599235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76595037_76597066_76597421_76597600_76598186_76598279
transcript_45043.known	chr15	+	2832	4	FSM	ENSMUSG00000033728.15	ENSMUST00000137649.8	2832	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	33.8066397160216	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCATTTCTAGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	76594842	76599284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76595731_76597066_76597421_76597600_76598186_76598279
transcript_45046.known	chr15	+	3943	3	FSM	ENSMUSG00000033728.15	ENSMUST00000142506.2	3943	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	41.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAACCAAAACAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	76594872	76600848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76595128_76597066_76598186_76598279
transcript_45051.known	chr15	-	1754	3	FSM	ENSMUSG00000116138.2	ENSMUST00000036247.10	1754	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	1	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTATTGACTTTAAATGA	9309	False	NA	-4	True	ATTAAA	-23	NA	76608040	76605664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76607184_76607370_76607420_76607854
transcript_45053.known	chr15	-	685	2	FSM	ENSMUSG00000116138.2	ENSMUST00000229507.2	685	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACCCAACCACAGCG	9325	False	NA	NA	False	NA	NA	NA	76608024	76607152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76607184_76607370
transcript_45055.known	chr15	-	2364	1	FSM	ENSMUSG00000116138.2	ENSMUST00000230372.2	2364	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGCCTCATCTCTATT	9309	False	NA	-16	True	ATTAAA	-11	NA	76608040	76605676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76605700_76608000
transcript_45056.known	chr15	-	1904	6	FSM	ENSMUSG00000033707.10	ENSMUST00000049956.5	1904	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGTTGGGGCGGCCTA	9563	False	NA	NA	False	AGTAAA	-23	NA	76606373	76599475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76600507_76602122_76602292_76602421_76602701_76602851_76603100_76603995_76604125_76606325
transcript_45061.known	chr15	-	4587	12	FSM	ENSMUSG00000033697.17	ENSMUST00000239003.2	4587	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	14.9749101461177	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGATTGTGTTTCTTTCAG	8169	False	NA	-4	True	AATAAA	-17	NA	76702370	76608184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76609377_76609522_76609693_76610122_76610215_76610828_76611029_76611602_76611677_76614563_76614657_76619076_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
transcript_45063.known	chr15	-	4494	11	FSM	ENSMUSG00000033697.17	ENSMUST00000239134.2	4494	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	15.2761251631426	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGATTGTGTTTCTTTCAG	8169	False	NA	-4	True	AATAAA	-17	NA	76702370	76608184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76609377_76609522_76609693_76610122_76610215_76610828_76611029_76611602_76611677_76619076_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
transcript_45067.nic	chr15	-	2894	7	ISM	ENSMUSG00000033697.17	ENSMUST00000239003.2	4587	12	-63	6407	-63	3065	5prime_fragment	FALSE	canonical	3	38	junction_1	15.4029218007494	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGCCTTATGTTGAAGA	8106	False	NA	NA	False	AAGAAA	-32	NA	76702433	76614591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_76614657_76619076_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
transcript_45068.known	chr15	-	4145	6	FSM	ENSMUSG00000033697.17	ENSMUST00000177011.2	4145	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	12.3353151560874	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAGTAGGAAAAATATT	8210	False	NA	NA	False	NA	NA	NA	76702329	76617656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76619639_76620655_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
transcript_45072.nic	chr15	-	2905	5	ISM	ENSMUSG00000033697.17	ENSMUST00000177011.2	4145	6	-104	2361	-63	-2361	5prime_fragment	FALSE	canonical	3	59	junction_3	12.5573683548744	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGAGCTCTTGTTAGATA	8106	False	NA	NA	False	AAAAAG	-6	NA	76702433	76620017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_76622010_76625712_76625797_76635727_76636148_76649684_76649852_76702191
transcript_45076.known	chr15	-	542	3	FSM	ENSMUSG00000033697.17	ENSMUST00000176219.9	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	34	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGCCCATGTTTTAAAT	8233	False	NA	NA	False	AAGAAA	-1	NA	76702306	76642240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76642501_76649684_76649852_76702191
transcript_45077.known	chr15	-	371	3	FSM	ENSMUSG00000033697.17	ENSMUST00000177026.3	371	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	42	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTTCAGCCCATGTTTT	8343	False	NA	NA	False	TTTAAA	-1	NA	76702196	76642244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76642444_76649684_76649852_76702191
transcript_45079.known	chr15	-	730	2	FSM	ENSMUSG00000033697.17	ENSMUST00000177255.2	730	2	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTCCACAGTAACAGAAAAA	8198	False	NA	NA	False	NA	NA	NA	76702341	76649271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76649852_76702191
transcript_45080.known	chr15	-	4036	4	FSM	ENSMUSG00000022526.9	ENSMUST00000080406.7	4036	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	4.24264068711928	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTCTGTAGTGATGGT	NA	False	NA	NA	False	ATTAAA	-17	NA	76755635	76735808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76738815_76754006_76754121_76754481_76754615_76754852
transcript_45082.known	chr15	-	3337	3	FSM	ENSMUSG00000022526.9	ENSMUST00000230315.2	3337	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	76755608	76736347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76738815_76754006_76754121_76754852
transcript_45086.known	chr15	+	2772	5	FSM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	13.4976849866931	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763458	76776595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772548_76774206
transcript_45087.nnic	chr15	+	2875	5	NNC	ENSMUSG00000033669.9	novel	2772	5	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	38.4341970125564	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763405	76776595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772598_76774206
transcript_45088.known	chr15	+	2960	5	FSM	ENSMUSG00000033669.9	ENSMUST00000230106.2	2960	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	32.962099447699	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAGGTGTAGCCTGTAC	NA	False	NA	NA	False	AATAAA	-13	NA	76763508	76776589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76774206
transcript_45090.known	chr15	+	920	2	FSM	ENSMUSG00000055041.9	ENSMUST00000109793.3	920	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAGTAAACAGCTGGGCT	NA	False	NA	NA	False	NA	NA	NA	76784135	76785391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76784216_76784551
transcript_45091.known	chr15	+	1331	1	FSM	ENSMUSG00000055041.9	ENSMUST00000230815.2	1331	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTAAAAACATGTTATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	76784164	76785495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76784200_76785500
transcript_45092.known	chr15	+	1037	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	0	0	0	0	multi-exon	TRUE	canonical	3	114	junction_1	0	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784109	76785505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76784193_76784551
transcript_45093.known	chr15	+	4356	4	FSM	ENSMUSG00000033669.9	ENSMUST00000230954.2	4356	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	33.9542175419916	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763530	76776595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76763554_76764938_76764983_76765314_76765439_76772430
transcript_45096.known	chr15	+	851	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	4219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788277	76790514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
transcript_45100.known	chr15	+	824	3	FSM	ENSMUSG00000003970.10	ENSMUST00000229591.2	824	3	0	0	0	0	multi-exon	FALSE	canonical	3	10804	junction_2	326	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGCACTGTGACCTAG	NA	False	NA	NA	False	NA	NA	NA	76788502	76789551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76788651_76788738_76788881_76789017
transcript_45101.known	chr15	+	1020	5	FSM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	0	0	0	0	multi-exon	FALSE	canonical	3	10804	junction_2	302.309754225695	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788301	76790514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
transcript_45109.known	chr15	-	644	6	FSM	ENSMUSG00000054967.8	ENSMUST00000229865.2	644	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	11.1713920350152	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTACCCGTTGCCCGACC	8521	False	NA	NA	False	NA	NA	NA	76809612	76796187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76796376_76801489_76801604_76801834_76801962_76802168_76802262_76805315_76805401_76809575
transcript_45111.known	chr15	-	2212	5	FSM	ENSMUSG00000054967.8	ENSMUST00000229055.2	2212	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	6.04152298679729	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGATGGCTCTGAGTTTGT	8485	False	NA	NA	False	ATTAAA	-24	NA	76809648	76794570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76796376_76801489_76801604_76801834_76801962_76802168_76802262_76809575
transcript_45112.known	chr15	+	1043	5	FSM	ENSMUSG00000063236.7	ENSMUST00000071792.7	1043	5	0	0	0	0	multi-exon	TRUE	canonical	1	74	junction_2	101.489839392917	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	21	True	AATAAA	-13	NA	76832705	76834929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_76832745_76832828_76833120_76833267_76833353_76833743_76833891_76834448
transcript_45120.known	chr15	-	6907	14	FSM	ENSMUSG00000033565.19	ENSMUST00000171751.10	6907	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	54.7017734965571	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGGCGTTTTGGCTCCT	NA	False	NA	-7	True	AATAAA	-15	NA	77191128	76963189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77115586_77115638_77190563
transcript_45122.nic	chr15	-	3651	14	NIC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	-28	1151	combination_of_known_junctions	FALSE	canonical	3	116	junction_12	32.8971860813506	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGCATCCTTTTGTAAGC	NA	False	NA	0	True	ATTAAA	-21	NA	77191232	76966537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77115586_77115638_77190563
transcript_45124.nic	chr15	-	2309	14	NIC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	-150	0	combination_of_known_junctions	FALSE	canonical	3	116	junction_12	32.8971860813506	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCATTTCCACGTCTGT	NA	False	NA	NA	False	AAAAAG	-2	NA	77191354	76968001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77115586_77115638_77190563
transcript_45127.nic	chr15	-	2004	14	NIC	ENSMUSG00000033565.19	novel	6907	14	NA	NA	-21	-70	combination_of_known_junctions	FALSE	canonical	3	116	junction_12	32.8971860813506	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTGTTCCAAAGATTG	NA	False	NA	NA	False	TTTAAA	-14	NA	77191225	76968177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77115586_77115638_77190563
transcript_45129.known	chr15	-	1694	13	FSM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_12	49.6258221314491	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTTCCACGTCTGTAT	NA	False	NA	NA	False	AAAAAG	-4	NA	77037954	76967999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
transcript_45137.known	chr15	-	6573	13	FSM	ENSMUSG00000033565.19	ENSMUST00000166610.8	6573	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	66.7536931978715	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCTGGCGTTTTGGCTCC	NA	False	NA	-8	True	AATAAA	-14	NA	77038012	76963190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
transcript_45146.known	chr15	-	2801	4	FSM	ENSMUSG00000056656.7	ENSMUST00000070911.4	2801	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGGCTACTTAGTTGT	2082	False	NA	NA	False	NA	NA	NA	77641203	77631998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77634417_77636998_77637126_77637443_77637509_77641012
transcript_45147.known	chr15	-	7433	41	FSM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	0	0	0	0	multi-exon	TRUE	canonical	3	307	junction_27	78.3427565254121	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGTGTCTGGGTGTTT	NA	False	NA	-2	True	AATAAA	-17	NA	77726375	77644786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
transcript_45157.nic	chr15	-	3061	22	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	-13	14515	-13	-1067	5prime_fragment	FALSE	canonical	3	307	junction_8	39.70594865101	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAAGATGCAGCAGA	NA	False	NA	NA	False	NA	NA	NA	77726388	77659301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
transcript_45161.nic	chr15	-	2818	21	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	-13	15280	-13	-1832	5prime_fragment	FALSE	canonical	3	307	junction_7	36.8537650722419	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTCGAGAGAAACATCTGG	NA	False	NA	NA	False	NA	NA	NA	77726388	77660066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
transcript_45169.known	chr15	-	2980	3	FSM	ENSMUSG00000022443.18	ENSMUST00000134878.2	2980	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_2	41.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATCATCCCTA	NA	False	NA	NA	False	NA	NA	NA	77726305	77689745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77692225_77697079_77697432_77726156
transcript_4517.known	chr1	-	2799	10	FSM	ENSMUSG00000054387.14	ENSMUST00000191212.7	2799	10	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	107.251521615728	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATATAAAAGAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	132953095	132918139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
transcript_45171.known	chr15	-	2228	8	FSM	ENSMUSG00000022443.18	ENSMUST00000129453.8	2228	8	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	33.7795977550029	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAGAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	77726305	77674424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77675048_77675247_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
transcript_45175.known	chr15	-	1298	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	0	0	0	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	14	True	NA	-5	True	AATAAA	-19	NA	77813206	77799246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
transcript_45181.known	chr15	-	1778	3	FSM	ENSMUSG00000005354.17	ENSMUST00000109747.9	1778	3	0	0	0	0	multi-exon	FALSE	canonical	3	1083	junction_1	111	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACAAGTTTGCAATTT	2747	False	NA	NA	False	AATAAA	-14	NA	77813174	77807419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77808867_77811891_77812155_77813106
transcript_45183.known	chr15	-	676	3	FSM	ENSMUSG00000005354.17	ENSMUST00000100486.6	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	642	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACGGGCTCACAACCAT	2724	False	NA	NA	False	NA	NA	NA	77813197	77810597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77810920_77811891_77812155_77813106
transcript_45184.known	chr15	-	4793	9	FSM	ENSMUSG00000016552.14	ENSMUST00000016696.13	4793	9	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_8	9.62337648645214	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCTCTGGCATTTTGG	8659	False	NA	2	True	AATAAA	-23	NA	77840922	77824721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77827593_77829778_77829950_77831217_77831460_77832553_77832720_77836169_77836337_77836494_77836762_77837482_77837735_77839788_77840290_77840766
transcript_45187.known	chr15	-	1877	2	FSM	ENSMUSG00000016552.14	ENSMUST00000129045.2	1877	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAGAAAGAAAGA	8698	False	NA	NA	False	NA	NA	NA	77840883	77836952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77837735_77839788
transcript_45190.nic	chr15	-	2089	15	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_14	427.115718201396	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2779	False	NA	-11	True	AATAAA	-24	NA	77854979	77843197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854658
transcript_45192.known	chr15	-	1899	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	4739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2745	False	NA	-11	True	AATAAA	-24	NA	77855013	77843197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
transcript_45217.known	chr15	-	1013	7	FSM	ENSMUSG00000016637.8	ENSMUST00000016781.8	1013	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	104.002270274366	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	False	NA	-2	True	AATAAA	-14	NA	78058307	78043662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
transcript_45226.known	chr15	-	1144	2	FSM	ENSMUSG00000044986.11	ENSMUST00000058659.9	1144	2	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	0	668	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGCCTCCTTGCCC	8084	False	NA	-3	True	AATAAA	-17	NA	78290107	78283755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78284231_78289438
transcript_45227.known	chr15	+	1279	3	FSM	ENSMUSG00000071711.13	ENSMUST00000167140.8	1279	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAAACATTTGTGG	NA	False	NA	NA	False	AATAAA	-6	NA	78290911	78298202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78290945_78294242_78294865_78297578
transcript_45228.known	chr15	+	1309	3	FSM	ENSMUSG00000071711.13	ENSMUST00000169133.8	1309	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAAACATTTGTGG	NA	False	NA	NA	False	AATAAA	-6	NA	78291000	78298202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78291064_78294242_78294865_78297578
transcript_45230.known	chr15	+	522	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229791.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCGCCTTCTTCGACATC	NA	False	NA	NA	False	NA	NA	NA	78290615	78294435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78290945_78294242
transcript_45231.known	chr15	+	1311	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229739.2	1311	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACATTTGTGGTTGT	NA	False	NA	NA	False	AATAAA	-10	NA	78294181	78298206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78294865_78297578
transcript_45232.nic	chr15	+	2868	7	NIC	ENSMUSG00000033287.18	novel	1180	7	NA	NA	-2	-3	intron_retention	FALSE	canonical	2	11	junction_6	43.4105082004602	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCTTTTTCTCTGGGCC	NA	False	NA	21	True	AATAAA	-28	NA	78312859	78323500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100_78321195_78321357
transcript_45235.known	chr15	+	1632	7	FSM	ENSMUSG00000033287.18	ENSMUST00000166142.11	1632	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	55.6339724349151	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTCTCTGGGCCACT	NA	False	NA	24	True	AATAAA	-31	NA	78312763	78323503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321783_78321872_78322686
transcript_45236.nic	chr15	+	3067	6	ISM	ENSMUSG00000033287.18	ENSMUST00000089414.12	1180	7	-1	-394	-1	0	intron_retention	FALSE	canonical	3	64	junction_5	26.081411004775	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTCTCTGGGCCACT	NA	False	NA	24	True	AATAAA	-31	NA	78312826	78323503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321100
transcript_45237.nic	chr15	+	2759	6	ISM	ENSMUSG00000033287.18	ENSMUST00000162517.9	901	8	96	-788	-2	-18	intron_retention	FALSE	canonical	1	3	junction_5	48.5691259958423	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGCCTGGCTGCCACC	NA	False	NA	6	True	AATAAA	-13	NA	78312859	78323485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78321357
transcript_45238.known	chr15	+	986	6	FSM	ENSMUSG00000033287.18	ENSMUST00000159771.8	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	37.5819105421744	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCACCTCTTAGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	78312861	78323043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78322686
transcript_45239.known	chr15	+	750	5	FSM	ENSMUSG00000033287.18	ENSMUST00000161016.8	750	5	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	15.305227865014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCCAGGCTGGGGAGCAG	NA	False	NA	NA	False	NA	NA	NA	78312890	78320060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784
transcript_45241.known	chr15	-	2191	3	FSM	ENSMUSG00000022440.10	ENSMUST00000147093.2	2191	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCCTGGTACTTTTTGC	NA	False	NA	NA	False	AATAAA	-22	NA	78413825	78407545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78409388_78411427_78411669_78413717
transcript_45242.known	chr15	-	2402	3	FSM	ENSMUSG00000022440.10	ENSMUST00000023075.9	2402	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCCTGGTACTTTTTGC	NA	False	NA	NA	False	AATAAA	-22	NA	78413825	78407545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78409599_78411427_78411669_78413717
transcript_45243.known	chr15	-	3038	7	FSM	ENSMUSG00000033220.8	ENSMUST00000043214.8	3038	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	5.64702478203247	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGGAATTTTATTTC	NA	False	NA	NA	False	AATAAA	-20	NA	78456983	78443366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78445686_78446105_78446239_78449062_78449223_78449640_78449704_78450113_78450232_78454931_78455004_78456810
transcript_45244.known	chr15	-	394	2	FSM	ENSMUSG00000116097.2	ENSMUST00000229702.2	394	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGCTGTGGTCGGAGTAT	2853	False	NA	-3	True	NA	NA	NA	78465816	78458610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78458873_78465684
transcript_45246.nnic	chr15	+	2957	14	NNC	ENSMUSG00000018008.9	novel	1223	3	NA	NA	-5184	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.18671143234935	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGCTATTCTTCTGTA	NA	False	NA	NA	False	AATAAA	-26	NA	78476062	78506219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_78476226_78480604_78480781_78486892_78486976_78488835_78488901_78490046_78490114_78491156_78491276_78492325_78492407_78493961_78494075_78495648_78495798_78499916_78500029_78502575_78502653_78503461_78503534_78503988_78504144_78504694
transcript_45247.known	chr15	+	2791	13	FSM	ENSMUSG00000018008.9	ENSMUST00000043069.6	2791	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.21335164821342	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGCTATTCTTCTGTA	NA	False	NA	NA	False	AATAAA	-26	NA	78481246	78506219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78481420_78486892_78486976_78488835_78488901_78490046_78490114_78491156_78491276_78492325_78492407_78493961_78494075_78495648_78495798_78499916_78500029_78502575_78502653_78503461_78503534_78503988_78504144_78504694
transcript_45248.known	chr15	-	1865	8	FSM	ENSMUSG00000018169.13	ENSMUST00000018313.6	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	11.4749060731561	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCCAGCTTCCTGCT	NA	False	NA	-4	True	ATTAAA	-17	NA	78657675	78640081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78640845_78641496_78641583_78643392_78643559_78645005_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
transcript_45250.nic	chr15	-	3387	7	NIC	ENSMUSG00000018169.13	novel	1865	8	NA	NA	-75	0	intron_retention	FALSE	canonical	3	144	junction_4	12.3017613914973	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCCAGCTTCCTGCT	NA	False	NA	-4	True	ATTAAA	-17	NA	78657750	78640081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_78640845_78641496_78641583_78643392_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
transcript_45253.nnic	chr15	-	4734	22	NNC	ENSMUSG00000033170.15	novel	4726	21	NA	NA	-69	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	12.3416960065244	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTGACCTTATGCTTGC	NA	False	NA	-13	True	ATTAAA	-14	NA	78687311	78659335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_78660104_78660166_78661031_78661664_78661778_78662158_78662275_78662397_78662557_78663594_78663689_78664441_78664512_78664676_78664921_78665272_78665385_78665674_78665835_78671555_78671680_78672045_78672075_78672921_78673038_78673930_78674057_78675240_78675433_78677085_78677212_78678052_78678209_78679408_78679601_78683295_78683622_78685832_78685971_78686580_78686833_78687054
transcript_45257.nnic	chr15	-	4222	22	NNC	ENSMUSG00000033170.15	novel	4726	21	NA	NA	-69	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	12.3416960065244	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTGGTGACCTTATGCT	NA	False	NA	-16	True	ATTAAA	-11	NA	78687311	78659338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_78660145_78660716_78661031_78661664_78661778_78662158_78662275_78662397_78662557_78663594_78663689_78664441_78664512_78664676_78664921_78665272_78665385_78665674_78665835_78671555_78671680_78672045_78672075_78672921_78673038_78673930_78674057_78675240_78675433_78677085_78677212_78678052_78678209_78679408_78679601_78683295_78683622_78685832_78685971_78686580_78686833_78687054
transcript_45259.known	chr15	-	4726	21	FSM	ENSMUSG00000033170.15	ENSMUST00000164826.8	4726	21	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_20	6.10634915477325	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGGTGACCTTATGCTT	NA	False	NA	-15	True	ATTAAA	-12	NA	78687242	78659337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78661031_78661664_78661778_78662158_78662275_78662397_78662557_78663594_78663689_78664441_78664512_78664676_78664921_78665272_78665385_78665674_78665835_78671555_78671680_78672045_78672075_78672921_78673038_78673930_78674057_78675240_78675433_78677085_78677212_78678052_78678209_78679408_78679601_78683295_78683622_78685832_78685971_78686580_78686833_78687054
transcript_45264.known	chr15	+	2560	3	FSM	ENSMUSG00000049521.3	ENSMUST00000059619.3	2560	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	1.5	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGACCTTGGGGAAAAGC	NA	False	NA	NA	False	AATAAA	-20	NA	78726823	78735097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78726926_78731294_78732020_78733364
transcript_45281.known	chr15	+	2665	17	FSM	ENSMUSG00000033128.10	ENSMUST00000230192.2	2665	17	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_10	123.234516649152	1748	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTAGCTGCTCTTGTCA	NA	False	NA	14	True	AATAAA	-14	NA	78761750	78778781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773919_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
transcript_453.known	chr1	+	4630	22	FSM	ENSMUSG00000016918.16	ENSMUST00000088585.10	4630	22	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	8.51675685882192	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTGTGCTTGCTAGAT	NA	False	NA	18	True	AATAAA	-42	NA	12788752	12930601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_12789008_12798817_12798913_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
transcript_45346.known	chr15	+	2001	2	FSM	ENSMUSG00000116165.2	ENSMUST00000089378.5	2001	2	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	719	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGTGTGTGTGTGCC	NA	False	NA	24	True	AATAAA	-18	NA	78798118	78803717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78798732_78802329
transcript_45347.known	chr15	+	1923	18	FSM	ENSMUSG00000022436.17	ENSMUST00000109698.9	1923	18	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_17	114.336569876277	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAACTGGCCAAACGAAAA	4398	False	NA	87	True	AATAAA	-20	NA	78783967	78796251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78796129
transcript_45348.known	chr15	+	2375	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGTAACTGGCCAAACG	4533	False	NA	83	True	AATAAA	-16	NA	78784102	78796247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
transcript_45351.known	chr15	+	800	4	FSM	ENSMUSG00000068220.7	ENSMUST00000089377.6	800	4	0	0	0	0	multi-exon	FALSE	canonical	3	1912	junction_2	63.4367576584918	380	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGATGACACATACTT	NA	False	NA	NA	False	AATAAA	-15	NA	78810924	78814665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78811005_78812169_78812250_78813832_78814005_78814197
transcript_45355.known	chr15	+	3721	6	FSM	ENSMUSG00000033099.11	ENSMUST00000138880.9	3721	6	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_1	39.9929993873928	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGGCCACGTGTGAC	NA	False	NA	NA	False	AGTAAA	-12	NA	78819132	78827838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
transcript_45356.nic	chr15	+	1342	6	NIC	ENSMUSG00000033099.11	novel	681	4	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	182.547528057764	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819356	78825064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_78819895_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
transcript_45360.known	chr15	+	7187	24	FSM	ENSMUSG00000033088.20	ENSMUST00000109689.9	7187	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	87.3398507407141	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGTGGATGCTGGGC	NA	False	NA	12	True	AATAAA	-16	NA	78831923	78890067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78832249_78832380_78832539_78835103_78835256_78841304_78841405_78842426_78842573_78844054_78844275_78845148_78845306_78850493_78852787_78856734_78856847_78857451_78858493_78860666_78860745_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78883996_78884145_78885720_78885824_78886247_78886408_78886484_78886599_78887905_78887993_78888644_78888806_78889401
transcript_45365.known	chr15	+	2570	14	FSM	ENSMUSG00000033088.20	ENSMUST00000109687.9	2570	14	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_8	26.3687999246734	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTCTGTGGATGCTG	NA	False	NA	9	True	AATAAA	-13	NA	78867240	78890064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78883996_78884145_78885720_78885824_78886247_78886408_78886484_78886599_78887905_78887993_78888644_78888806_78889401
transcript_4537.known	chr1	-	1275	2	FSM	ENSMUSG00000054387.14	ENSMUST00000186645.2	1275	2	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAATAGAAAAAATATT	NA	False	NA	NA	False	AAAAAG	-13	NA	132953076	132945438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_132946623_132952985
transcript_45372.known	chr15	+	1660	8	FSM	ENSMUSG00000033088.20	ENSMUST00000130663.10	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	63.6226118191786	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATACAGAAATGGATTC	NA	False	NA	NA	False	AATAAA	-25	NA	78867276	78879059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78878497
transcript_45374.known	chr15	+	2055	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	475	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGAGTGGTGCGTTTTTCT	1147	False	NA	21	True	AATAAA	-17	NA	78912649	78914704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78912600_78914700
transcript_45377.known	chr15	+	2370	9	FSM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	0	0	0	0	multi-exon	FALSE	canonical	3	1189	junction_6	75.224663508719	1320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAGTGAGGCACCTGCC	632	False	NA	NA	False	ATTAAA	-25	NA	78915073	78922553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
transcript_4538.known	chr1	+	5594	2	FSM	ENSMUSG00000046062.6	ENSMUST00000052529.4	5594	2	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	0	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTGACTTTATGTAT	5567	False	NA	15	True	AATAAA	-20	NA	133058880	133067521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_133061354_133064400
transcript_45398.known	chr15	-	1034	8	FSM	ENSMUSG00000033055.13	ENSMUST00000153003.3	1034	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	39.0143877176048	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCCGAGGGCAGAACTG	NA	False	NA	NA	False	NA	NA	NA	78947036	78938109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78938285_78938695_78938804_78939491_78939617_78939694_78939743_78940213_78940286_78942154_78942249_78945363_78945412_78946672
transcript_45400.nic	chr15	-	2015	7	NIC	ENSMUSG00000033055.13	novel	1904	8	NA	NA	-35	0	intron_retention	FALSE	canonical	3	102	junction_5	6.51707159867238	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTGGTTGTTGTTTTT	NA	False	NA	-10	True	NA	NA	NA	78947128	78937303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_78938285_78938695_78938804_78939491_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
transcript_45402.known	chr15	-	2582	7	FSM	ENSMUSG00000033055.13	ENSMUST00000133541.8	2582	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	6.51707159867238	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTGGTTGTTGTTTTT	NA	False	NA	-10	True	NA	NA	NA	78947085	78937303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78938285_78938695_78939617_78939694_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
transcript_45403.known	chr15	-	714	6	FSM	ENSMUSG00000033055.13	ENSMUST00000229322.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_4	6.88767014308903	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACCAAAGAACAGGTGAGC	NA	False	NA	NA	False	NA	NA	NA	78946822	78938709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78938804_78939491_78939743_78940213_78940286_78942154_78942254_78945363_78945412_78946672
transcript_45404.known	chr15	-	2012	2	FSM	ENSMUSG00000033055.13	ENSMUST00000128631.2	2012	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAAAACATT	NA	False	NA	NA	False	NA	NA	NA	78947093	78943820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_78945412_78946672
transcript_45408.known	chr15	+	1942	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	0	0	0	0	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	1662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGGTCTCATTATTAT	NA	False	NA	30	True	AGTAAA	-20	NA	78959378	78978605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
transcript_4542.known	chr1	+	3688	2	FSM	ENSMUSG00000046062.6	ENSMUST00000122956.2	3688	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTGACTTTATGTAT	5768	False	NA	15	True	AATAAA	-20	NA	133059081	133067521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_133059649_133064400
transcript_45422.known	chr15	+	1157	7	FSM	ENSMUSG00000033047.6	ENSMUST00000229338.2	1157	7	0	0	0	0	multi-exon	FALSE	canonical	3	1651	junction_4	138.29276513574	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTCTCTTGTTGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	78959447	78966693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053
transcript_45431.known	chr15	+	6712	16	FSM	ENSMUSG00000033039.11	ENSMUST00000040320.10	6712	16	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	11.2514690398879	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCAGTGTGGGCCTTTGT	6031	False	NA	13	True	AATAAA	-22	NA	78993163	79021100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_78993630_78998854_78998904_78999229_78999372_79003935_79004028_79004958_79005102_79006746_79007187_79008700_79008759_79009449_79009875_79011126_79011534_79014008_79014144_79014662_79014790_79014908_79015000_79015137_79015212_79015973_79016089_79016252_79016300_79017199
transcript_45433.known	chr15	+	452	5	FSM	ENSMUSG00000033020.8	ENSMUST00000040077.8	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	888.21224940889	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTTTTATATGTGTAAATA	NA	False	NA	-18	True	NA	NA	NA	79025550	79035928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030339_79035535_79035608_79035788
transcript_45434.known	chr15	+	885	5	FSM	ENSMUSG00000033020.8	ENSMUST00000230271.2	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	2023	junction_4	39.9335385359224	2119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGTTACCTGCGTGCTG	NA	False	NA	28	True	AATAAA	-22	NA	79025208	79035974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035608_79035788
transcript_45435.known	chr15	+	414	5	FSM	ENSMUSG00000033020.8	ENSMUST00000229973.2	414	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	890.483962517012	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATCCCCATCATCATTC	NA	False	NA	NA	False	NA	NA	NA	79025565	79035794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035674_79035788
transcript_4544.known	chr1	-	3107	1	FSM	ENSMUSG00000102425.2	ENSMUST00000195676.2	3107	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAATAAAAGAAAAACCT	8876	False	NA	NA	False	NA	NA	NA	133059520	133056413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133056400_133059500
transcript_45446.known	chr15	+	2054	13	FSM	ENSMUSG00000068206.14	ENSMUST00000163571.8	2054	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	62.6245425798331	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCAGACCCTTTGCAGC	4174	False	NA	36	True	AATAAA	-36	NA	79113372	79133684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79113621_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
transcript_45452.known	chr15	+	1977	13	FSM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_9	26.1878894826512	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	4383	False	NA	18	True	AATAAA	-18	NA	79113581	79133666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
transcript_45467.known	chr15	-	2100	14	FSM	ENSMUSG00000018126.16	ENSMUST00000165408.8	2100	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	0.72160242458822	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAGTGAAGGAGCCTGAT	NA	False	NA	NA	False	NA	NA	NA	79169737	79142394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79142853_79143003_79143048_79143387_79143596_79143851_79143975_79145273_79145488_79145601_79145741_79146012_79146166_79154705_79154853_79155401_79155519_79155724_79155797_79167625_79167688_79168206_79168294_79168774_79168851_79169537
transcript_45472.nic	chr15	-	3206	18	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	55.3629733985577	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212426	79170427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834_79211915_79212288
transcript_45481.known	chr15	-	3318	17	FSM	ENSMUSG00000042632.18	ENSMUST00000174021.8	3318	17	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_16	39.721638860324	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212164	79170427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
transcript_45483.nic	chr15	-	3153	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	53.1124617556935	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212453	79170427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
transcript_45484.nic	chr15	-	3056	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_16	39.5790348543266	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212477	79170427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
transcript_45486.known	chr15	-	3018	17	FSM	ENSMUSG00000042632.18	ENSMUST00000173163.8	3018	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	64.3206991857987	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212403	79170427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834_79211915_79212288
transcript_45487.known	chr15	-	2943	17	FSM	ENSMUSG00000042632.18	ENSMUST00000172403.9	2943	17	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_16	62.696565894792	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTTCATTGTACAGTGT	NA	False	NA	-14	True	AATAAA	-12	NA	79212453	79170431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834_79211915_79212409
transcript_45492.known	chr15	-	3365	16	FSM	ENSMUSG00000042632.18	ENSMUST00000166977.9	3365	16	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_8	51.9652020319581	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212376	79170427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
transcript_45493.known	chr15	-	2963	16	FSM	ENSMUSG00000042632.18	ENSMUST00000047816.15	2963	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	63.160817671155	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212428	79170427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
transcript_45494.nic	chr15	-	2894	16	NIC	ENSMUSG00000042632.18	novel	2943	17	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	51.8533830461748	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212480	79170427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
transcript_45502.known	chr15	+	1958	3	FSM	ENSMUSG00000042622.15	ENSMUST00000096350.11	1958	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	7	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGTGTATGTCTTGGAC	2265	False	NA	22	True	AATAAA	-23	NA	79231719	79243276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79231955_79241166_79241234_79241620
transcript_45503.known	chr15	+	1902	3	FSM	ENSMUSG00000042622.15	ENSMUST00000163691.3	1902	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	8	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAGAAGTGTATGTCTT	2809	False	NA	18	True	AATAAA	-19	NA	79232263	79243272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79232447_79241166_79241234_79241620
transcript_45515.known	chr15	-	3315	10	FSM	ENSMUSG00000009035.16	ENSMUST00000228002.2	3315	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	128.214615603374	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGATTGTATTGAAATCTC	NA	False	NA	-23	True	AATAAA	-30	NA	79287456	79244903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79247086_79247857_79247879_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
transcript_45521.known	chr15	-	3627	9	FSM	ENSMUSG00000009035.16	ENSMUST00000074991.10	3627	9	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_8	29.0298876160415	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTGCCAGCGAGGTT	NA	False	NA	-3	True	AATATA	-34	NA	79287769	79244883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79247086_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
transcript_45523.known	chr15	-	784	8	FSM	ENSMUSG00000009035.16	ENSMUST00000231076.2	784	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	157.82307324653	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTCGCCAGCCTACCAG	NA	False	NA	NA	False	NA	NA	NA	79287439	79247001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79247086_79247857_79247879_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79287384
transcript_45531.known	chr15	-	1392	11	FSM	ENSMUSG00000022433.22	ENSMUST00000120859.9	1392	11	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_10	81.5738315883225	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATTAAATAC	8153	False	NA	NA	False	NA	NA	NA	79326203	79303365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
transcript_45533.nic	chr15	-	2760	11	NIC	ENSMUSG00000022433.22	novel	2695	11	NA	NA	-57	0	combination_of_known_junctions	TRUE	canonical	3	37	junction_10	155.61375260561	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCCTCTGTCTGCCTCT	8372	False	NA	-4	True	AATAAA	-24	NA	79339824	79302055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
transcript_45534.nnic	chr15	-	2542	11	NNC	ENSMUSG00000022433.22	novel	2695	11	NA	NA	43	-6	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	167.909618545216	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATAGATACCCTCTGTCT	8062	False	NA	-10	True	AATAAA	-18	NA	79326294	79302061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_79303143_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
transcript_45542.nic	chr15	-	1412	11	NIC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_10	159.216487839671	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAATAAGAGAAAGGACA	7985	False	NA	NA	False	NA	NA	NA	79326371	79303348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326292
transcript_45543.nic	chr15	-	1467	11	NIC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	155.61375260561	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAATAAGAGAAAGGACA	8372	False	NA	NA	False	NA	NA	NA	79339824	79303348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
transcript_45549.nic	chr15	-	2743	9	NIC	ENSMUSG00000022433.22	novel	3174	9	NA	NA	43	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	217.31684098339	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGCGTTTCTTAAG	8062	False	NA	0	True	AATAAA	-15	NA	79326294	79306680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79308256_79308351_79308456_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
transcript_4555.known	chr1	+	656	3	FSM	ENSMUSG00000115958.2	ENSMUST00000195286.5	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	17.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5608	False	NA	4	True	AATAAA	-16	NA	133251703	133257460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_133251787_133254872_133255079_133257093
transcript_45552.known	chr15	-	3174	9	FSM	ENSMUSG00000022433.22	ENSMUST00000122044.8	3174	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	252.865051707428	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGCGTTTCTTAAG	8338	False	NA	0	True	AATAAA	-15	NA	79326018	79306680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79308256_79308351_79308456_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79325420
transcript_45553.nic	chr15	-	1580	9	NIC	ENSMUSG00000022433.22	novel	3174	9	NA	NA	43	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	217.31684098339	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACGTGTACCTCTCTTT	8062	False	NA	-1	True	ATTAAA	-18	NA	79326294	79307843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79308256_79308351_79308456_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326127
transcript_45559.nnic	chr15	-	2235	3	NNC	ENSMUSG00000044216.8	novel	2152	2	NA	NA	-604	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGCTGGTAGAGAGAGGA	6824	False	NA	NA	False	AATAAA	-19	NA	79390046	79367914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_79370021_79389396_79389423_79389943
transcript_4556.nnic	chr1	+	585	3	NIC	ENSMUSG00000115958.2	novel	656	3	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	18	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5604	False	NA	4	True	AATAAA	-16	NA	133251699	133257460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_133251787_133254947_133255079_133257093
transcript_45561.known	chr15	-	2152	2	FSM	ENSMUSG00000044216.8	ENSMUST00000057801.8	2152	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGCTGGTAGAGAGAGGA	7428	False	NA	NA	False	AATAAA	-19	NA	79389442	79367914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79370021_79389396
transcript_45563.known	chr15	-	4732	13	FSM	ENSMUSG00000055065.8	ENSMUST00000054014.9	4732	13	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	13.6714930502203	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	-40	True	AATAAA	-15	NA	79430942	79411936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79414719_79415872_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
transcript_45564.known	chr15	-	4726	13	FSM	ENSMUSG00000055065.8	ENSMUST00000229877.2	4726	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_12	13.0064086767511	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	-40	True	AATAAA	-15	NA	79430942	79411936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79414719_79415878_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
transcript_45570.known	chr15	-	2821	11	FSM	ENSMUSG00000055065.8	ENSMUST00000229431.2	2821	11	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_10	13.6707717412003	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCATATTTTAAAATC	NA	False	NA	NA	False	ATTAAA	-14	NA	79430760	79418861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
transcript_45572.nic	chr15	-	1359	9	ISM	ENSMUSG00000055065.8	ENSMUST00000229431.2	2821	11	-31	2849	-31	-2849	5prime_fragment	FALSE	canonical	3	55	junction_8	11.5427195668958	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAATAAGACTATAATAT	NA	False	NA	NA	False	NA	NA	NA	79430791	79421710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
transcript_45574.known	chr15	+	1411	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	14.7986485869487	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAGTATTTATTTATA	NA	False	NA	11	True	AATAAA	-16	NA	79400611	79411940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
transcript_45575.nic	chr15	-	658	2	ISM	ENSMUSG00000055065.8	ENSMUST00000229431.2	2821	11	-221	9124	-39	-9124	5prime_fragment	FALSE	canonical	3	55	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGGGATTTGAGTGAAC	NA	False	NA	NA	False	NA	NA	NA	79430981	79427985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_79428058_79430395
transcript_45576.known	chr15	-	2219	14	FSM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	20.9451241307391	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGATTCTGCATTCA	NA	False	NA	NA	False	AGTAAA	-16	NA	79489309	79445697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
transcript_4558.nnic	chr1	+	824	3	NNC	ENSMUSG00000116158.2	novel	496	2	NA	NA	-1055	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	23	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	7799	False	NA	4	True	AATAAA	-16	NA	133253894	133257460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_133254146_133254872_133255079_133257093
transcript_45583.known	chr15	-	1931	12	FSM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	21.834085113127	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAATATAAGACTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	79489300	79445811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
transcript_4559.nnic	chr1	+	749	3	NNC	ENSMUSG00000116158.2	novel	496	2	NA	NA	-1055	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	21.5	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	7799	False	NA	4	True	AATAAA	-16	NA	133253894	133257460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_133254146_133254947_133255079_133257093
transcript_45591.known	chr15	+	1147	5	FSM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_3	15.1224171348366	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGTGTAGCAAAAATAG	9559	False	NA	NA	False	ATTAAA	-14	NA	79543399	79551861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79543495_79545571_79545726_79549846_79549953_79550031_79550151_79551188
transcript_45593.known	chr15	+	1569	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	0	0	0	0	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTGTTTTTATTGGTG	8178	False	NA	NA	False	AATAGA	-12	NA	79555061	79557601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
transcript_45596.known	chr15	+	595	3	FSM	ENSMUSG00000022427.5	ENSMUST00000229502.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	445.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTTACATGCCCATTG	8198	False	NA	5	True	AATAAA	-13	NA	79555081	79556766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79555210_79556097_79556216_79556417
transcript_45598.known	chr15	-	3440	4	FSM	ENSMUSG00000022426.7	ENSMUST00000023061.7	3440	4	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	10.9848380355227	485	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAGTCTACTTGTCTGAT	NA	False	NA	-3	True	ATTAAA	-15	NA	79572120	79558451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79560381_79561297_79561493_79561599_79561729_79570933
transcript_456.known	chr1	+	4636	21	FSM	ENSMUSG00000016918.16	ENSMUST00000180062.8	4636	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.3950647211852	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGGCTCTCTCTGTGCTTG	NA	False	NA	12	True	AATAAA	-36	NA	12762546	12930595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_12762909_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908582_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12920983_12921018_12929035
transcript_45601.known	chr15	+	3449	12	FSM	ENSMUSG00000042535.10	ENSMUST00000046463.10	3449	12	0	0	0	0	multi-exon	TRUE	canonical	3	199	junction_6	19.3826198026279	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCATGTTCCCTGCCC	NA	False	NA	17	True	AATAAA	-18	NA	79575045	79605680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79575300_79578356_79578469_79591192_79591374_79591895_79592245_79596296_79596421_79597564_79597680_79600047_79600193_79600286_79600470_79601183_79601320_79601795_79601975_79603228_79603430_79604210
transcript_45603.nic	chr15	+	3275	12	NIC	ENSMUSG00000042535.10	novel	3449	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_3	65.8303605005803	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCATGTTCCCTGCCC	NA	False	NA	17	True	AATAAA	-18	NA	79575045	79605680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_79575300_79578356_79578469_79591192_79591374_79592069_79592245_79596296_79596421_79597564_79597680_79600047_79600193_79600286_79600470_79601183_79601320_79601795_79601975_79603228_79603430_79604210
transcript_45607.known	chr15	-	3768	18	FSM	ENSMUSG00000042524.15	ENSMUST00000100439.10	3768	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	1.19108569007745	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGAGTGTGCTTTTTTCT	NA	False	NA	-1	True	AATAAA	-15	NA	79626705	79608271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79609762_79610742_79610836_79610991_79611160_79611251_79611368_79611716_79611802_79612063_79612286_79612616_79612783_79613233_79613278_79613681_79613760_79614290_79614546_79618308_79618437_79620046_79620121_79621266_79621361_79621673_79621770_79622720_79622862_79623020_79623212_79623921_79624083_79626539
transcript_45608.known	chr15	-	3804	18	FSM	ENSMUSG00000042524.15	ENSMUST00000046259.14	3804	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.14366012324845	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGGAGTGTGCTTTTTT	NA	False	NA	-3	True	AATAAA	-13	NA	79626737	79608273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79609762_79610742_79610836_79610991_79611160_79611251_79611368_79611716_79611802_79612063_79612286_79612616_79612783_79613233_79613278_79613681_79613760_79614290_79614546_79618308_79618437_79620046_79620127_79621266_79621361_79621673_79621770_79622720_79622862_79623020_79623212_79623921_79624083_79626539
transcript_45609.known	chr15	-	3709	17	FSM	ENSMUSG00000042524.15	ENSMUST00000089311.11	3709	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	1.1709371246997	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGAGTGTGCTTTTTTCTG	NA	False	NA	0	True	AATAAA	-16	NA	79626735	79608270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79609762_79610742_79610836_79610991_79611160_79611251_79611368_79611716_79611802_79612063_79612286_79612616_79612783_79613233_79613278_79613681_79613760_79614290_79614546_79618308_79618437_79620046_79620127_79621266_79621361_79622720_79622862_79623020_79623212_79623921_79624083_79626539
transcript_45612.nic	chr15	-	2270	8	ISM	ENSMUSG00000042524.15	ENSMUST00000046259.14	3804	18	-50	8904	-50	1131	5prime_fragment	FALSE	canonical	0	0	junction_3	1.27775312999988	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATGGTAGGGAGCCAT	NA	False	NA	NA	False	AAAACA	-15	NA	79626787	79617177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_79618437_79620046_79620127_79621266_79621361_79621673_79621770_79622720_79622862_79623020_79623212_79623921_79624083_79626539
transcript_45618.known	chr15	-	1011	5	FSM	ENSMUSG00000022420.17	ENSMUST00000069877.12	1011	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	59.2637114936282	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	327	False	NA	NA	False	ATTAAA	-17	NA	79658584	79645653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79646251_79646627_79646727_79647710_79647795_79649016_79649223_79658559
transcript_45619.nic	chr15	-	1546	5	ISM	ENSMUSG00000022420.17	ENSMUST00000162713.9	1357	7	2498	-684	-7	0	3prime_fragment	FALSE	canonical	3	63	junction_3	39.8591269347436	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	236	False	NA	NA	False	ATTAAA	-17	NA	79658675	79645653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_79646727_79647710_79647795_79649016_79649223_79649987_79650055_79658559
transcript_4562.known	chr1	+	2297	8	FSM	ENSMUSG00000070644.14	ENSMUST00000135222.9	2297	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	9.79379228628721	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTTGGGATCTGATTAG	NA	False	NA	25	True	ATTAAA	-35	NA	133291309	133308074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
transcript_45620.known	chr15	-	1472	4	FSM	ENSMUSG00000022420.17	ENSMUST00000023055.8	1472	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	38.6091526281874	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	243	False	NA	NA	False	ATTAAA	-17	NA	79658668	79645653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79646727_79647710_79647795_79649016_79649223_79658559
transcript_45622.known	chr15	-	1162	8	FSM	ENSMUSG00000089837.10	ENSMUST00000023060.13	1162	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	65.4759653675784	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCTCCATTGCCTGTCA	NA	False	NA	NA	False	NA	NA	NA	79718438	79673875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79674118_79674466_79674647_79676803_79677052_79678456_79678677_79717712_79717780_79717902_79717969_79718115_79718160_79718343
transcript_45623.known	chr15	-	5806	5	FSM	ENSMUSG00000089715.13	ENSMUST00000109627.8	5806	5	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	17.0367250374008	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCCCCCTGGATGGGG	NA	False	NA	-4	True	AATAAA	-22	NA	79718889	79708096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79713180_79717712_79717780_79717902_79717969_79718115_79718160_79718343
transcript_45624.known	chr15	-	4948	5	FSM	ENSMUSG00000022421.21	ENSMUST00000175858.10	4948	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	7.59522876548166	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGGCTCTTCTGTCATAT	NA	False	NA	-2	True	AATAAA	-16	NA	79688910	79670552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79674118_79674466_79674647_79676803_79677052_79678456_79678677_79688175
transcript_45628.known	chr15	-	3056	5	FSM	ENSMUSG00000089715.13	ENSMUST00000109625.8	3056	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	62.5114989421946	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79718438	79710341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79713126_79717712_79717780_79717902_79717969_79718115_79718160_79718343
transcript_45630.known	chr15	-	546	5	FSM	ENSMUSG00000089715.13	ENSMUST00000127721.8	546	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	65.9445790038878	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCTCCAATTTGTCCAA	NA	False	NA	NA	False	NA	NA	NA	79718526	79716772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79716959_79717712_79717780_79717902_79717969_79718115_79718160_79718343
transcript_45631.known	chr15	-	576	4	FSM	ENSMUSG00000089715.13	ENSMUST00000129614.2	576	4	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	9.89949493661167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGAGTGAAGCAGGTGGG	NA	False	NA	NA	False	NA	NA	NA	79718475	79717445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79717780_79717902_79717969_79718115_79718160_79718343
transcript_45638.nic	chr15	+	2027	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	-77	0	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	219.175122618878	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTGTGCATGATTG	7425	False	NA	6	True	NA	NA	NA	79775782	79792119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_45644.known	chr15	+	2459	9	FSM	ENSMUSG00000009585.19	ENSMUST00000109620.10	2459	9	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_5	144.740284648055	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGTCTCAAAAAAAAAAAAA	8251	False	NA	NA	False	NA	NA	NA	79776608	79792630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_45652.known	chr15	+	2765	8	FSM	ENSMUSG00000009585.19	ENSMUST00000176325.8	2765	8	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_5	149.473770820386	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	8292	False	NA	NA	False	NA	NA	NA	79776649	79792637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051
transcript_45654.known	chr15	+	1977	8	FSM	ENSMUSG00000009585.19	ENSMUST00000175752.8	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	224.554434107971	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCCCTCACCCATCAGA	8291	False	NA	NA	False	AATAAA	-15	NA	79776648	79792287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_4568.nic	chr1	-	3800	14	NIC	ENSMUSG00000070643.12	novel	3693	14	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	27.9932367148772	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGCCCTTTCTCTGCT	NA	False	NA	-8	True	AATAAA	-15	NA	133352181	133310040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133311663_133312150_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316299_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
transcript_45689.known	chr15	-	2899	7	FSM	ENSMUSG00000053411.17	ENSMUST00000109616.9	2899	7	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	127.989582909444	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	-7	True	ATTAAA	-24	NA	79816853	79800007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
transcript_45692.nic	chr15	-	3079	7	NIC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-134	0	combination_of_known_junctions	FALSE	canonical	3	156	junction_1	121.853737461488	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	-7	True	ATTAAA	-24	NA	79855454	79800007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
transcript_45706.nnic	chr15	-	3064	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-14	1	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_1	153.192326468687	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTCTGTGTGTCTGGT	NA	False	NA	-9	True	ATTAAA	-22	NA	79816983	79800009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_79802252_79802440_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
transcript_45708.nnic	chr15	-	2990	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_1	148.84294481843	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTCTGTGTGTCTGGT	NA	False	NA	-9	True	ATTAAA	-22	NA	79855330	79800009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_79802252_79802440_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
transcript_4571.nic	chr1	-	3801	14	NIC	ENSMUSG00000070643.12	novel	3693	14	NA	NA	-111	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_8	19.4802281798964	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGCCCTTTCTCTGCT	NA	False	NA	-8	True	AATAAA	-15	NA	133352226	133310040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133311663_133312194_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316299_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
transcript_4573.known	chr1	-	3693	14	FSM	ENSMUSG00000070643.12	ENSMUST00000153799.8	3693	14	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_8	19.9582404271205	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGCCCTTTCTCTGCT	NA	False	NA	-8	True	AATAAA	-15	NA	133352115	133310040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133311663_133312194_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316302_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
transcript_45747.known	chr15	-	710	6	FSM	ENSMUSG00000053411.17	ENSMUST00000109615.8	710	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_5	106.136892737634	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGGGCAGATGGGGACA	NA	False	NA	NA	False	NA	NA	NA	79816741	79802310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
transcript_45748.known	chr15	-	714	6	FSM	ENSMUSG00000053411.17	ENSMUST00000146719.9	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	171.122646075848	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACAGGGGGGGAAGGCCA	NA	False	NA	NA	False	NA	NA	NA	79818100	79802348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79817965
transcript_45749.known	chr15	-	528	6	FSM	ENSMUSG00000053411.17	ENSMUST00000132821.8	528	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	93.730251253264	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGGACACCCACGCTCC	NA	False	NA	NA	False	NA	NA	NA	79855319	79802649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
transcript_45753.known	chr15	-	663	6	FSM	ENSMUSG00000053411.17	ENSMUST00000128931.8	663	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	178.26384939185	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCGTGACTGACATCACC	NA	False	NA	NA	False	NA	NA	NA	79855320	79802617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79802678_79802953_79803129_79805572_79805640_79807672_79807739_79814786_79814831_79855069
transcript_45755.known	chr15	-	3388	6	FSM	ENSMUSG00000053411.17	ENSMUST00000089293.11	3388	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	177.465038810465	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGACTTCTGTGTGTCTGG	NA	False	NA	-10	True	ATTAAA	-21	NA	79816840	79800010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79802678_79802953_79803306_79805572_79805640_79807672_79807739_79814786_79814831_79816648
transcript_4576.nic	chr1	-	4405	13	NIC	ENSMUSG00000070643.12	novel	3693	14	NA	NA	-186	-3	intron_retention	FALSE	canonical	3	41	junction_7	18.2412459978905	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGACGTGCCCTTTCTCT	NA	False	NA	-11	True	AATAAA	-12	NA	133352301	133310043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316299_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
transcript_45767.known	chr15	-	6057	4	FSM	ENSMUSG00000053411.17	ENSMUST00000176639.8	6057	4	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	126.212343118871	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGAGACTTCTGTGTGTC	NA	False	NA	-13	True	ATTAAA	-18	NA	79816969	79800013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79805640_79807672_79807739_79814786_79814831_79816648
transcript_45777.nnic	chr15	-	2203	7	NNC	ENSMUSG00000000489.8	novel	2944	7	NA	NA	208	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_6	4.63381292481928	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGTGAATCTGTGTGTTG	NA	False	NA	NA	False	AAAAAG	-14	NA	79897196	79880074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79897064
transcript_45778.nic	chr15	-	2231	7	NIC	ENSMUSG00000000489.8	novel	2944	7	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	5.6494837522261	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGTGAATCTGTGTGTTG	NA	False	NA	NA	False	AAAAAG	-14	NA	79897450	79880074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79897290
transcript_4578.nic	chr1	-	4305	13	NIC	ENSMUSG00000070643.12	novel	3693	14	NA	NA	-83	-3	intron_retention	FALSE	canonical	3	38	junction_7	18.8252194911212	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGACGTGCCCTTTCTCT	NA	False	NA	-11	True	AATAAA	-12	NA	133352198	133310043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316302_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
transcript_45780.known	chr15	-	2944	7	FSM	ENSMUSG00000000489.8	ENSMUST00000000500.8	2944	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	4.63381292481928	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGTGAATCTGTGTGTTG	NA	False	NA	NA	False	AAAAAG	-14	NA	79899009	79880074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79898136
transcript_45784.known	chr15	-	1351	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	14718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3518	False	NA	-1	True	AATAAA	-17	NA	79967607	79961991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
transcript_45785.nic	chr15	-	1501	10	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	26	0	combination_of_known_junctions	FALSE	canonical	3	214	junction_7	9920.80080773053	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTTTTCCCACATTT	3544	False	NA	-5	True	AATAAA	-13	NA	79967581	79961995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
transcript_45788.known	chr15	-	1877	9	FSM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_8	5123.08483118326	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTTTTCCCACATTT	3571	False	NA	-5	True	AATAAA	-13	NA	79967554	79961995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
transcript_45798.nic	chr15	-	2394	8	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	16287	junction_7	5307.90272968101	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTTTTCCCACATTT	3569	False	NA	-5	True	AATAAA	-13	NA	79967556	79961995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965985_79966590_79966784_79967524
transcript_4580.known	chr1	-	503	5	FSM	ENSMUSG00000090553.9	ENSMUST00000166915.8	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	447.106461035848	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTCATTCTGGTGGC	NA	False	NA	-9	True	AATAAA	-30	NA	133538029	133531608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455_133537483_133537901
transcript_4581.known	chr1	-	669	4	FSM	ENSMUSG00000090553.9	ENSMUST00000164096.2	669	4	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_2	133.057214093119	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAACTCTGGCTGTT	NA	False	NA	NA	False	NA	NA	NA	133537987	133533824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133534318_133536634_133536698_133537455_133537483_133537901
transcript_45811.known	chr15	+	4180	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009727.12	4180	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	626.014554321401	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTGTGTCACTGTGTT	NA	False	NA	20	True	AATAAA	-20	NA	79975544	80003702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_80000055
transcript_45813.known	chr15	-	824	5	FSM	ENSMUSG00000060036.15	ENSMUST00000187832.7	824	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_2	12495.7520081826	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGAGATGATTGATGTC	3591	False	NA	NA	False	NA	NA	NA	79967534	79964617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
transcript_45814.known	chr15	+	819	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	1267	junction_2	72.7232195840274	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGCCTGTGTGGATTA	NA	False	NA	18	True	NA	NA	NA	79975534	79997642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
transcript_4582.known	chr1	-	360	4	FSM	ENSMUSG00000090553.9	ENSMUST00000166291.8	360	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	1734.66788367879	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133537970	133531613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133531815_133536634_133536698_133537455_133537483_133537901
transcript_45821.nic	chr15	-	2627	4	Fusion	ENSMUSG00002075255.1_ENSMUSG00000060036.15	novel	824	5	NA	NA	-2	1212	intron_retention	FALSE	canonical	3	16287	junction_3	6785.68278722848	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTTGGTAACTGTAAAA	3569	False	NA	NA	False	NA	NA	NA	79967556	79963239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr15_-_79964754_79965096_79965985_79966590_79966784_79967524
transcript_45832.known	chr15	-	614	2	FSM	ENSMUSG00000060036.15	ENSMUST00000185928.2	614	2	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCCTTGCAAAGTAAGTG	3587	False	NA	NA	False	NA	NA	NA	79967538	79966183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_79966784_79967524
transcript_45839.known	chr15	+	2964	11	FSM	ENSMUSG00000022414.9	ENSMUST00000023050.9	2964	11	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.29109045342327	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCATCTTGTCTATCTG	4993	False	NA	15	True	AGTAAA	-1	NA	80017327	80045908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80017390_80032427_80032565_80032887_80033042_80033982_80034070_80034627_80034767_80036865_80036980_80037832_80037945_80039957_80040103_80041804_80042028_80042951_80043109_80044274
transcript_4584.known	chr1	-	653	4	FSM	ENSMUSG00000090553.9	ENSMUST00000172079.2	653	4	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	471.411356107027	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGAAGTTTTTGTTAAAA	NA	False	NA	-34	True	AATAAA	-5	NA	133537785	133531633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455
transcript_45849.known	chr15	+	4665	2	FSM	ENSMUSG00000042428.7	ENSMUST00000044970.7	4665	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGTGTGTGCTGTGTGTG	NA	False	NA	18	True	AATAAA	-19	NA	80057921	80099720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80058040_80095173
transcript_45855.nic	chr15	+	2282	7	ISM	ENSMUSG00000022412.15	ENSMUST00000229138.2	4097	8	-51	2932	11	-148	5prime_fragment	FALSE	canonical	3	52	junction_1	78.4488509936393	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGGTGTTTTGTTTT	2764	False	NA	NA	False	NA	NA	NA	80118229	80134618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_80118383_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
transcript_45857.nic	chr15	+	4457	7	ISM	ENSMUSG00000022412.15	ENSMUST00000229138.2	4097	8	0	706	0	-143	intron_retention	FALSE	canonical	3	52	junction_1	78.4488509936393	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTATTTTTTGGTTCTTT	2815	False	NA	2	True	AGTAAA	-17	NA	80118280	80136844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_80118383_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
transcript_45859.nic	chr15	+	5275	7	ISM	ENSMUSG00000022412.15	ENSMUST00000229138.2	4097	8	-90	-22	-28	0	intron_retention	FALSE	canonical	3	52	junction_1	78.4488509936393	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACGTGTCTATGTGGT	2725	False	NA	16	True	AATAAA	-18	NA	80118190	80137572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_80118383_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
transcript_45880.known	chr15	+	5148	6	FSM	ENSMUSG00000022412.15	ENSMUST00000023048.12	5148	6	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	35.3361005205724	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACGTGTCTATGTGGT	2753	False	NA	16	True	AATAAA	-18	NA	80118218	80137572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
transcript_45887.known	chr15	+	4394	6	FSM	ENSMUSG00000022412.15	ENSMUST00000228788.3	4394	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	71.0785480999718	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGCAGGGCTGGCTCTG	2836	False	NA	NA	False	NA	NA	NA	80118301	80136987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132527_80132705_80133529
transcript_4589.known	chr1	-	4396	18	FSM	ENSMUSG00000102976.7	ENSMUST00000191896.6	4396	18	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_16	96.2094744595279	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTTATCATTATAACTCA	NA	False	NA	1	True	AATAAA	-21	NA	133589056	133547599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588974
transcript_45897.known	chr15	+	659	4	FSM	ENSMUSG00000042406.9	ENSMUST00000229828.2	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	614.772044473939	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTGATCTTTTTGCC	4146	False	NA	NA	False	NA	NA	NA	80139385	80140960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80139486_80139768_80139887_80140407_80140723_80140834
transcript_45899.known	chr15	+	1725	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_2	43	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4145	False	NA	32	True	AATAAA	-20	NA	80139384	80141742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
transcript_4590.nic	chr1	-	2842	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	-36	-1633	combination_of_known_junctions	FALSE	canonical	3	78	junction_17	104.361959952471	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCACCAAAAACTGGACT	NA	False	NA	NA	False	NA	NA	NA	133589154	133549232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588993
transcript_45902.known	chr15	+	2019	1	FSM	ENSMUSG00000042406.9	ENSMUST00000230434.2	2019	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4484	False	NA	32	True	AATAAA	-20	NA	80139723	80141742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80139700_80141700
transcript_45903.known	chr15	-	525	5	FSM	ENSMUSG00000051518.9	ENSMUST00000230189.2	525	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	375.465377897883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCAGCTAGACTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	80148447	80145195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_80145332_80145497_80145596_80147892_80148029_80148183_80148319_80148427
transcript_45905.known	chr15	-	838	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAAGTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-25	NA	80148516	80144815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
transcript_45914.known	chr15	+	2993	5	FSM	ENSMUSG00000022408.8	ENSMUST00000023044.7	2993	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCAGTGTGGTGTGTGC	NA	False	NA	NA	False	ATTAAA	-30	NA	80556047	80584626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80556589_80574117_80574286_80574733_80574856_80576111_80576798_80583150
transcript_45915.known	chr15	+	17332	25	FSM	ENSMUSG00000047888.11	ENSMUST00000067689.9	17332	25	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	6.56960594116742	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACTGTTGTCATTTCTG	NA	False	NA	7	True	AATAAA	-19	NA	80595513	80825286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80595690_80631606_80631675_80643740_80643832_80668939_80669008_80742881_80742970_80748585_80748608_80760517_80760863_80763067_80765408_80767144_80767304_80768407_80768584_80771159_80771235_80772030_80772077_80773219_80773357_80778529_80778656_80786084_80786217_80786488_80786588_80786720_80786914_80797505_80797644_80800884_80801062_80802151_80802299_80802711_80802808_80807658_80807884_80808286_80808358_80811800_80811941_80813289
transcript_45929.nic	chr15	+	534	5	ISM	ENSMUSG00000047888.11	ENSMUST00000067689.9	17332	25	-58	82332	-58	-22735	5prime_fragment	FALSE	canonical	1	2	junction_2	3.57071421427143	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCACCCAGAAGGTGAG	NA	False	NA	NA	False	GATAAA	-10	NA	80595455	80742954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_80595690_80631606_80631675_80643740_80643832_80668939_80669008_80742881
transcript_45930.known	chr15	+	3240	5	FSM	ENSMUSG00000047888.11	ENSMUST00000226857.2	3240	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1.29903810567666	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAGTCACCA	NA	False	NA	NA	False	TTTAAA	-12	NA	80682842	80765689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80683006_80742881_80742970_80748585_80748608_80760517_80760863_80763067
transcript_4594.known	chr1	-	4395	17	FSM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_16	98.6493157604248	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589118	133547608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588974
transcript_45941.known	chr15	+	3711	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	1922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCCAGAGGTGCAGAGC	NA	False	NA	NA	False	AGTAAA	-13	NA	80832690	80855147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
transcript_4595.nic	chr1	-	2765	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	-13	-1624	combination_of_known_splicesites	FALSE	canonical	3	25	junction_16	101.178060863015	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCACCAAAAACTGGACT	NA	False	NA	NA	False	NA	NA	NA	133589131	133549232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588993
transcript_4596.nic	chr1	-	3184	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	-7	-1624	combination_of_known_splicesites	FALSE	canonical	3	13	junction_16	103.726503363412	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCACCAAAAACTGGACT	NA	False	NA	NA	False	NA	NA	NA	133589125	133549232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582177_133588974
transcript_45964.known	chr15	+	1932	11	FSM	ENSMUSG00000022407.11	ENSMUST00000166711.8	1932	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	319.033289799043	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAACAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	80832712	80853320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
transcript_4597.nnic	chr1	-	3158	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	0	-1624	combination_of_known_splicesites	FALSE	canonical	1	4	junction_16	105.649904608334	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCACCAAAAACTGGACT	NA	False	NA	NA	False	NA	NA	NA	133589118	133549232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582177_133588993
transcript_45977.known	chr15	+	2997	22	FSM	ENSMUSG00000042303.20	ENSMUST00000139517.9	2997	22	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_4	14.7956603308487	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTTGTTTTATTTTAA	NA	False	NA	7	True	AATACA	-17	NA	80861965	80896491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
transcript_45978.known	chr15	+	401	5	FSM	ENSMUSG00000042303.20	ENSMUST00000137004.2	401	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	66.5972033947372	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTGGCTTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	80862037	80888386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80888263
transcript_4598.nic	chr1	-	4154	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	-17	-1624	intron_retention	FALSE	canonical	3	133	junction_16	79.3516697996961	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCACCAAAAACTGGACT	NA	False	NA	NA	False	NA	NA	NA	133589135	133549232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133583137_133588974
transcript_45982.known	chr15	-	1724	9	FSM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_6	19.7638400873919	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAGTTGCTCTTGATT	6848	False	NA	-10	True	AATAAA	-27	NA	81245013	81203111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
transcript_45989.known	chr15	-	843	8	FSM	ENSMUSG00000022404.9	ENSMUST00000231140.2	843	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	118.944679303842	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAGACGCAGGTGCTGC	6883	False	NA	NA	False	NA	NA	NA	81244978	81203811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
transcript_4599.nic	chr1	-	4154	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	-36	-1624	intron_retention	FALSE	canonical	3	78	junction_16	90.1805264109165	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCACCAAAAACTGGACT	NA	False	NA	NA	False	NA	NA	NA	133589154	133549232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133583137_133588993
transcript_45992.known	chr15	-	629	2	FSM	ENSMUSG00000022404.9	ENSMUST00000231078.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTAGCAGTTACTTAAG	6887	False	NA	NA	False	TATAAA	-1	NA	81244974	81227830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81228363_81244877
transcript_45996.known	chr15	-	3346	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	0	0	0	0	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	-19	True	AATAAA	-18	NA	81284244	81247869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
transcript_46.known	ERCC-00137	+	521	1	FSM	ERCC-00137A	DQ855000	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00137_+_0_500
transcript_46006.nic	chr15	-	647	2	ISM	ENSMUSG00000022403.16	ENSMUST00000163382.2	621	4	-3	2619	-3	-1	intron_retention	FALSE	canonical	3	2722	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAAGGTAAGTTCAGATT	NA	False	NA	NA	False	CATAAA	-18	NA	81284281	81276472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_81276524_81283685
transcript_46007.known	chr15	-	1089	12	FSM	ENSMUSG00000022403.16	ENSMUST00000023039.15	1089	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	740.766712477045	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAAAGCCCTTGCTGAAT	NA	False	NA	NA	False	AGTAAA	-31	NA	81283795	81249650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273898_81276465_81276524_81283685
transcript_46009.known	chr15	+	1641	11	FSM	ENSMUSG00000022401.13	ENSMUST00000165258.8	1641	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	17.7977526671206	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCACTGTGGCATCCCTG	NA	False	NA	NA	False	NA	NA	NA	81284396	81337232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81284489_81298632_81298750_81300103_81300196_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81332519_81332698_81335101_81335223_81337065
transcript_46011.known	chr15	+	6058	10	FSM	ENSMUSG00000022401.13	ENSMUST00000163754.9	6058	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	9.02397355744309	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGTGTCTGTCTTATTTT	NA	False	NA	24	True	TATAAA	-17	NA	81284338	81341683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81284489_81298632_81298750_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81332519_81332698_81335101_81335223_81337065
transcript_46012.known	chr15	+	3236	9	FSM	ENSMUSG00000022401.13	ENSMUST00000041609.11	3236	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	17.1823856027037	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	81284388	81339089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81284489_81298632_81298750_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81335101_81335223_81337065
transcript_46015.known	chr15	+	771	5	FSM	ENSMUSG00000022401.13	ENSMUST00000167799.2	771	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	22.1627502805947	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAATAATCAACTCATCA	NA	False	NA	NA	False	NA	NA	NA	81284397	81322359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81284489_81298632_81298750_81311476_81311885_81320914_81320978_81322267
transcript_46016.known	chr15	+	1675	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	0	0	0	0	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTGTCATTTTCACC	NA	False	NA	17	True	NA	NA	NA	81350496	81360570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
transcript_46018.known	chr15	+	651	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	1851.90407081468	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACGAGGAACCTGTCAGA	NA	False	NA	NA	False	NA	NA	NA	81350841	81359587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
transcript_46020.known	chr15	+	555	3	FSM	ENSMUSG00000022400.10	ENSMUST00000230219.2	555	3	0	0	0	0	multi-exon	FALSE	canonical	3	4160	junction_1	326.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACCATTTAAGGCCTTG	NA	False	NA	NA	False	AAAACA	-27	NA	81350544	81355521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81350652_81352355_81352435_81355152
transcript_46029.known	chr15	+	3487	17	FSM	ENSMUSG00000022394.15	ENSMUST00000023029.15	3487	17	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_15	40.713125570877	1282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGATATCAGATGAGT	NA	False	NA	17	True	AATAAA	-24	NA	81548089	81572516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
transcript_46030.known	chr15	+	3368	17	FSM	ENSMUSG00000022394.15	ENSMUST00000172748.8	3368	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_16	166.366864470513	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGATATCAGATGAGT	NA	False	NA	17	True	AATAAA	-24	NA	81548156	81572516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571192
transcript_46046.known	chr15	+	4645	16	FSM	ENSMUSG00000022394.15	ENSMUST00000172620.8	4645	16	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_14	41.7399355799961	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAACAATGTGATGATA	NA	False	NA	7	True	AATAAA	-14	NA	81548154	81572506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81548226_81551359_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
transcript_46048.nic	chr15	+	2281	15	ISM	ENSMUSG00000022394.15	ENSMUST00000023029.15	3487	17	-297	2885	-297	1580	5prime_fragment	FALSE	canonical	3	640	junction_8	41.3633106676407	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTTTGGGAAGAAAAGTAA	NA	False	NA	NA	False	AAGAAA	-1	NA	81547792	81569631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581
transcript_46079.known	chr15	-	2548	6	FSM	ENSMUSG00000063765.13	ENSMUST00000072910.6	2548	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	13.905394636615	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTAGCATTAGTGCTAGC	4995	False	NA	NA	False	NA	NA	NA	81581488	81570365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81570604_81576308_81576508_81577187_81577355_81577734_81579445_81580050_81580226_81581429
transcript_46080.known	chr15	-	1095	3	FSM	ENSMUSG00000063765.13	ENSMUST00000173898.2	1095	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	12.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAACCAAAATACC	8075	False	NA	NA	False	NA	NA	NA	81578408	81570381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81570604_81576308_81576508_81577734
transcript_46085.known	chr15	-	2743	17	FSM	ENSMUSG00000022391.17	ENSMUST00000171115.3	2743	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	273.319410214496	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAACAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81614063	81588811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81610274_81610484_81613912
transcript_46086.known	chr15	-	2984	17	FSM	ENSMUSG00000022391.17	ENSMUST00000170134.9	2984	17	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_16	270.05335121046	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGAAGCTTCTTTCATCAA	NA	False	NA	-4	True	AATAAA	-25	NA	81614102	81588448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613417_81613466_81613912
transcript_46094.known	chr15	-	3033	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	1841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	-9	True	AATAAA	-20	NA	81614204	81588453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
transcript_46095.known	chr15	+	5740	23	FSM	ENSMUSG00000022390.12	ENSMUST00000109554.3	5740	23	0	0	0	0	multi-exon	TRUE	canonical	3	112	junction_21	52.4698457282257	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTTAGCCTTTGTTCT	1948	False	NA	4	True	AATAAA	-15	NA	81629257	81680461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184_81653383_81655938_81656098_81656628_81656710_81657486_81657544_81660006_81660050_81660478_81660673_81660981_81661304_81662073_81662133_81662810_81662911_81663309_81663472_81664604_81664811_81666159_81666261_81667225_81667408_81670082_81670169_81676132_81676267_81676430_81676537_81676663_81676773_81676980_81677115_81677220_81677385_81677701
transcript_46098.known	chr15	+	4079	4	FSM	ENSMUSG00000022389.16	ENSMUST00000023024.8	4079	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	7.84573486395988	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTCCCAGCTGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	81695614	81710899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81695922_81699144_81699463_81705399_81705621_81707666
transcript_46101.known	chr15	-	4151	2	FSM	ENSMUSG00000048546.9	ENSMUST00000050467.9	4151	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCTGCCTACTTGTTTG	NA	False	NA	-8	True	ATTAAA	-17	NA	81742686	81732472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81736074_81742136
transcript_46104.known	chr15	-	2590	1	FSM	ENSMUSG00000048546.9	ENSMUST00000229500.2	2590	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81742524	81739934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81739900_81742500
transcript_46108.known	chr15	-	471	4	FSM	ENSMUSG00000061360.9	ENSMUST00000160415.2	471	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	625.5474047229	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGGCCCCTGCCACTA	NA	False	NA	NA	False	NA	NA	NA	81755866	81749886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81755793
transcript_46109.known	chr15	-	1663	4	FSM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	0	0	0	0	multi-exon	FALSE	canonical	3	1228	junction_3	69.0426599204354	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCCAAGAAAAAATTCATGG	NA	False	NA	NA	False	AATAAA	-22	NA	81756112	81748720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81756013
transcript_46116.known	chr15	-	1290	6	FSM	ENSMUSG00000022476.9	ENSMUST00000230765.2	1290	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	105.973581613532	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTTGGGAAAGTAGAGAG	697	False	NA	NA	False	NA	NA	NA	81810172	81800770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809428
transcript_46118.known	chr15	-	2542	6	FSM	ENSMUSG00000022476.9	ENSMUST00000023113.7	2542	6	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_5	12.0432553738597	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCTGTCATCAAAAATAAA	428	False	NA	NA	False	AATAAA	-17	NA	81810441	81799229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809986
transcript_46126.known	chr15	+	2918	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	0	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	4708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	19	True	AAAAAG	-16	NA	81756509	81799334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
transcript_46127.known	chr15	+	351	3	FSM	ENSMUSG00000022477.14	ENSMUST00000157003.8	351	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	883.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTAGCCTATGCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	81756684	81773890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81756750_81773498_81773581_81773686
transcript_46128.known	chr15	+	2490	4	FSM	ENSMUSG00000042109.9	ENSMUST00000038757.8	2490	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTTGAGTGTTC	5842	False	NA	NA	False	AATAAA	-28	NA	81820959	81835142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81821189_81830831_81831134_81832774_81832898_81833306
transcript_4613.nic	chr1	-	1093	10	NIC	ENSMUSG00000102976.7	novel	973	9	NA	NA	-13	324	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	157.466829742444	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAGGAAAAATCCAAGAAG	NA	False	NA	NA	False	AATAAA	-30	NA	133589131	133566297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133585126_133585155_133588993
transcript_46131.known	chr15	-	1300	8	FSM	ENSMUSG00000022474.16	ENSMUST00000023112.12	1300	8	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_3	83.919543587405	1641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845131	81835308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
transcript_46132.known	chr15	-	1059	7	FSM	ENSMUSG00000022474.16	ENSMUST00000071462.7	1059	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	406.121355699938	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845070	81835308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81842096_81842112_81844915
transcript_46133.known	chr15	-	1291	9	FSM	ENSMUSG00000022474.16	ENSMUST00000229385.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	470.161341988046	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845043	81835308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81838572_81838652_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
transcript_46134.known	chr15	-	612	5	FSM	ENSMUSG00000022474.16	ENSMUST00000230229.2	612	5	0	0	0	0	multi-exon	FALSE	canonical	3	1051	junction_1	37.9300342736465	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACTGTGTGTCATTTC	NA	False	NA	-4	True	NA	NA	NA	81845034	81839743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
transcript_46135.known	chr15	+	456	1	FSM	ENSMUSG00000061848.6	ENSMUST00000072779.6	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACTTCTCATTATTTT	6274	False	NA	NA	False	AAGAAA	-29	NA	81856590	81857046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81856600_81857000
transcript_46136.known	chr15	+	1024	1	FSM	ENSMUSG00000061633.4	ENSMUST00000074608.4	1024	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGAGTGCATTCTTAAA	6326	False	NA	9	True	AATAAA	-17	NA	81864740	81865764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81864700_81865800
transcript_46139.known	chr15	+	2114	13	FSM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	0	0	0	0	multi-exon	TRUE	canonical	3	579	junction_9	64.3868516598433	1013	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGCACTTTTCAGTAT	NA	False	NA	29	True	AATAAA	-15	NA	81900569	81924286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
transcript_46161.known	chr15	-	2934	6	FSM	ENSMUSG00000022472.17	ENSMUST00000152227.8	2934	6	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_5	9.30806102257608	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGTAAGTTGCTTGA	NA	False	NA	-9	True	AATAAA	-16	NA	81900364	81876723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81879047_81882310_81882434_81883705_81883816_81886741_81886812_81887958_81887981_81900078
transcript_46165.known	chr15	-	2854	5	FSM	ENSMUSG00000022472.17	ENSMUST00000146628.8	2854	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	75.5016556109864	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGTAAGTTGCTTGA	NA	False	NA	-9	True	AATAAA	-16	NA	81900354	81876723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81879047_81882310_81882434_81883705_81883816_81887958_81887981_81900078
transcript_46171.known	chr15	-	2077	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	0	0	0	0	multi-exon	FALSE	canonical	3	3045	junction_2	110	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGGTTTTGCCTGTTT	4906	False	NA	NA	False	NA	NA	NA	81931799	81924725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81926570_81928097_81928219_81931687
transcript_46173.known	chr15	-	1061	2	FSM	ENSMUSG00000063480.9	ENSMUST00000166578.2	1061	2	0	0	0	0	multi-exon	FALSE	canonical	3	3045	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTTTAGGAAAACGACTA	4925	False	NA	NA	False	NA	NA	NA	81931780	81927250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_81928219_81931687
transcript_46177.known	chr15	+	3956	31	FSM	ENSMUSG00000068117.11	ENSMUST00000089178.11	3956	31	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_18	1.51327459504216	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCAGGACATAAAGGCCC	4980	False	NA	NA	False	NA	NA	NA	81954197	82010860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_81954506_81956082_81956207_81957039_81957091_81959318_81959393_81961800_81961907_81964125_81964330_81966097_81966229_81967274_81967390_81969014_81969132_81970331_81970432_81970536_81970672_81973708_81973824_81975509_81975602_81976819_81976962_81978097_81978210_81980070_81980132_81982201_81982300_81985148_81985318_81985628_81985777_81987340_81987617_81991230_81991397_81993739_81993839_81996644_81996756_81997048_81997213_81999639_81999722_81999883_82000060_82007622_82007705_82008098_82008206_82009050_82009183_82009353_82009467_82010814
transcript_46180.known	chr15	+	2046	7	FSM	ENSMUSG00000068114.8	ENSMUST00000089174.6	2046	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	6.64371047599825	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTCTTTGGCTTCTTTT	NA	False	NA	25	True	AATAAA	-36	NA	82012122	82026404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82015945_82016031_82018781_82018964_82019270_82019343_82025066
transcript_46181.known	chr15	+	1854	6	FSM	ENSMUSG00000068114.8	ENSMUST00000229411.2	1854	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	18.8933850857913	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTATGTCTTTGGCTTC	NA	False	NA	21	True	AATAAA	-32	NA	82012225	82026400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82018781_82018964_82019270_82019343_82025066
transcript_46191.known	chr15	+	5077	19	FSM	ENSMUSG00000022463.9	ENSMUST00000023100.8	5077	19	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_18	78.7541886011292	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGGCTGTGTGAGTCTG	2173	False	NA	25	True	AATAAA	-21	NA	82031381	82089580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
transcript_4621.nic	chr1	-	2405	9	NIC	ENSMUSG00000102976.7	novel	973	9	NA	NA	-13	324	intron_retention	FALSE	canonical	0	0	junction_7	160.257166376421	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAGGAAAAATCCAAGAAG	NA	False	NA	NA	False	AATAAA	-30	NA	133589131	133566297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133583137_133585126_133585155_133588993
transcript_4622.known	chr1	-	973	9	FSM	ENSMUSG00000102976.7	ENSMUST00000195424.6	973	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	164.662106676066	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATTACGAGTGGCTTCT	NA	False	NA	NA	False	NA	NA	NA	133589116	133566621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133585126_133585155_133588993
transcript_46235.known	chr15	+	1981	4	FSM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_2	39.6176167324027	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	2243	False	NA	NA	False	NA	NA	NA	82031451	82058095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953
transcript_46236.known	chr15	+	2664	3	FSM	ENSMUSG00000022463.9	ENSMUST00000231065.2	2664	3	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_2	5.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAGTGATAGGAAAGAAAA	2238	False	NA	NA	False	AATAAA	-10	NA	82031446	82057826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82031692_82053938_82055485_82056953
transcript_46239.known	chr15	+	2110	1	FSM	ENSMUSG00000116226.2	ENSMUST00000229390.2	2110	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTGAAAAAGAAAAAA	5811	False	NA	NA	False	NA	NA	NA	82069716	82071826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82069700_82071800
transcript_4624.nic	chr1	-	1036	8	ISM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	-19	18689	-19	-18689	5prime_fragment	FALSE	canonical	3	37	junction_7	119.759282372122	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAGGAAAAATCCAAGAAG	NA	False	NA	NA	False	AATAAA	-30	NA	133589137	133566297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588974
transcript_46240.known	chr15	-	2588	4	FSM	ENSMUSG00000096883.3	ENSMUST00000179269.3	2588	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	2.62466929133727	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCTGAGATCCGC	NA	False	NA	NA	False	GATAAA	-24	NA	82097016	82090368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82091749_82091951_82092099_82092663_82092798_82096089
transcript_46242.nnic	chr15	-	1905	4	NNC	ENSMUSG00000096883.3	novel	2588	4	NA	NA	-58	242	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	36.3807030657127	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGATCGATCATCAGTCAT	NA	False	NA	-4	True	AATAAA	-26	NA	82097074	82091152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_82091792_82091951_82092099_82092663_82092798_82096089
transcript_46247.nic	chr15	-	2051	3	NIC	ENSMUSG00000096883.3	novel	2588	4	NA	NA	-48	238	intron_retention	FALSE	canonical	3	79	junction_2	3	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGGGATCGATCATCAG	NA	False	NA	-8	True	AATAAA	-22	NA	82097064	82091156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_82092099_82092663_82092798_82096089
transcript_46248.known	chr15	-	1924	3	FSM	ENSMUSG00000068105.12	ENSMUST00000089161.10	1924	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	3	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGCCTGGGTGCTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	82108554	82105943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82107478_82107919_82108124_82108368
transcript_4625.nic	chr1	-	1011	8	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	-13	-18689	combination_of_known_splicesites	FALSE	canonical	3	25	junction_7	123.732100333993	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAGGAAAAATCCAAGAAG	NA	False	NA	NA	False	AATAAA	-30	NA	133589131	133566297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588993
transcript_46254.known	chr15	-	1202	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	82128949	82117979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
transcript_46259.known	chr15	-	789	5	FSM	ENSMUSG00000068101.12	ENSMUST00000089155.6	789	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	529.66121247454	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128928	82118279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82118711_82124079_82124160_82125527_82125621_82128333_82128414_82128823
transcript_46261.known	chr15	-	593	5	FSM	ENSMUSG00000068101.12	ENSMUST00000230408.2	593	5	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	109.17045158833	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCGCTGGCCATGTGC	NA	False	NA	NA	False	NA	NA	NA	82128611	82118660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333
transcript_46264.nic	chr15	-	922	4	ISM	ENSMUSG00000068101.12	ENSMUST00000089155.6	789	5	277	0	-40	0	3prime_fragment	FALSE	canonical	3	56	junction_1	602.108148277552	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128651	82118279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_82118711_82124079_82124160_82125527_82125621_82128333
transcript_46269.known	chr15	+	2397	10	FSM	ENSMUSG00000022456.19	ENSMUST00000116423.3	2397	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	12.7017059221718	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACCCTTAAA	9967	False	NA	NA	False	NA	NA	NA	82159093	82176267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82159255_82163615_82163808_82167259_82167389_82167877_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938
transcript_46272.nic	chr15	-	2011	10	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_8	84.6325390536445	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1220	False	NA	0	True	AATAAA	-31	NA	82223151	82213732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221698_82222438_82222516_82222952
transcript_46273.known	chr15	-	1913	10	FSM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_2	15.084944665313	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1344	False	NA	0	True	AATAAA	-31	NA	82223027	82213732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
transcript_46278.nnic	chr15	-	1928	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	2	29	junction_8	84.7758072801433	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1252	False	NA	0	True	AATAAA	-31	NA	82223119	82213732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222952
transcript_46280.nic	chr15	-	1865	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1220	False	NA	0	True	AATAAA	-31	NA	82223151	82213732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
transcript_46293.known	chr15	-	1020	7	FSM	ENSMUSG00000022453.9	ENSMUST00000230380.2	1020	7	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_3	11.7106314470608	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATTCTTTTCCTACTT	1388	False	NA	NA	False	NA	NA	NA	82222983	82218817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
transcript_46298.known	chr15	+	705	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_2	125	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTTGGTTGCACTTT	NA	False	NA	61	True	AATAAA	-43	NA	82230154	82233291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82230471_82232100_82232242_82233043
transcript_46299.known	chr15	+	597	3	FSM	ENSMUSG00000022452.17	ENSMUST00000161892.2	597	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	632.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCTTGGTTGCACTTTA	NA	False	NA	62	True	AATAAA	-44	NA	82230214	82233292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82230422_82232100_82232242_82233043
transcript_46300.known	chr15	+	2745	2	FSM	ENSMUSG00000049687.6	ENSMUST00000050349.3	2745	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	82225379	82229911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82225473_82227259
transcript_46301.known	chr15	-	590	3	FSM	ENSMUSG00000022450.7	ENSMUST00000023085.7	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	3916	junction_1	175	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTCTCTCTTACTT	6212	False	NA	-13	True	GATAAA	-21	NA	82238523	82234340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82234573_82235179_82235296_82238281
transcript_46305.known	chr15	-	1141	1	FSM	ENSMUSG00000022450.7	ENSMUST00000229283.2	1141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAACAAAACAAAAAA	6297	False	NA	NA	False	NA	NA	NA	82238438	82237297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82237300_82238400
transcript_46306.known	chr15	-	382	2	FSM	ENSMUSG00000022450.7	ENSMUST00000230494.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTGCACTGGTGAACC	6280	False	NA	-37	True	AATAAA	-26	NA	82238455	82234364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82234573_82238281
transcript_46307.known	chr15	-	2769	10	FSM	ENSMUSG00000061740.9	ENSMUST00000023083.9	2769	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.415739709641549	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGAGTAGTCTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	82264458	82254727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82255927_82256022_82256165_82256590_82256779_82256985_82257128_82257311_82257489_82257873_82258035_82258104_82258258_82258498_82258671_82259993_82260243_82264272
transcript_46313.known	chr15	-	1732	6	FSM	ENSMUSG00000058099.17	ENSMUST00000231204.2	1732	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGAGCAGCCTAGCTGTC	4882	False	NA	NA	False	NA	NA	NA	82907284	82883038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_82883997_82885615_82885703_82894575_82894675_82899115_82899229_82900544_82900863_82907127
transcript_46319.known	chr15	+	1371	12	FSM	ENSMUSG00000058586.13	ENSMUST00000078218.11	1371	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	9.92534113742268	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCAAGTGGCTGTTGTC	NA	False	NA	17	True	AATAAA	-18	NA	82984404	83000875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
transcript_4632.known	chr1	-	2309	6	FSM	ENSMUSG00000051998.15	ENSMUST00000169295.8	2309	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTCGTTCTGGTTCCAC	NA	False	NA	NA	False	NA	NA	NA	133617846	133606828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_133608374_133610720_133610792_133611275_133611381_133611743_133611848_133616558_133616743_133617546
transcript_46335.known	chr15	-	4363	7	FSM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_3	73.7437379639037	1100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	83007002	82997633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
transcript_4634.known	chr1	-	2743	2	FSM	ENSMUSG00000020423.7	ENSMUST00000020692.7	2743	2	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	0	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTCCTTGGGAGGCG	NA	False	NA	NA	False	TATAAA	-39	NA	134006858	134002907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_134005442_134006649
transcript_46348.nnic	chr15	-	3272	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	199.638995176448	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033595	83010176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_83011492_83011528_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
transcript_46357.nnic	chr15	-	3185	9	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	258.479901297954	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033595	83010176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_83011492_83011528_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
transcript_4636.known	chr1	+	1815	12	FSM	ENSMUSG00000026450.15	ENSMUST00000159963.8	1815	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.91760118834204	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTGTGACTTAAAGAAGC	1436	False	NA	NA	False	AATAAA	-18	NA	134038979	134079278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134039101_134066378_134066511_134067997_134068028_134070977_134071180_134071748_134071806_134072989_134073156_134073328_134073454_134074299_134074424_134076073_134076260_134077113_134077222_134078216_134078344_134078841
transcript_46362.known	chr15	-	3299	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	1261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033585	83010176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
transcript_46368.known	chr15	-	3157	8	FSM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_6	194.457277192347	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	-13	True	AATAAA	-15	NA	83033532	83010178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
transcript_46374.known	chr15	-	2393	3	FSM	ENSMUSG00000041815.15	ENSMUST00000149802.2	2393	3	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_1	85	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGAATTTCTGAGCTC	NA	False	NA	NA	False	NA	NA	NA	83033530	83019888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83021756_83022332_83022724_83033395
transcript_46376.known	chr15	-	837	2	FSM	ENSMUSG00000041815.15	ENSMUST00000150926.2	837	2	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCAGTCGCAGGACCAGG	NA	False	NA	NA	False	NA	NA	NA	83033537	83022028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83022724_83033395
transcript_46377.nnic	chr15	-	1369	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	382	-582	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGAGGAAGAGAGAGGG	NA	False	NA	NA	False	NA	NA	NA	83056411	83038276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_83038353_83038441_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
transcript_46379.known	chr15	-	2422	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	0	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCAGCGTTTCTCTGGG	NA	False	NA	0	True	AGTAAA	-18	NA	83056793	83037694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
transcript_46383.known	chr15	+	2459	1	FSM	ENSMUSG00000116508.2	ENSMUST00000231106.2	2459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCACCTGAGACTCTGC	NA	False	NA	NA	False	AATAAA	-18	NA	83056550	83059009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_83056600_83059000
transcript_46384.nnic	chr15	-	2126	3	NNC	ENSMUSG00000047878.14	novel	2092	3	NA	NA	13701	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	45.5	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	5772	False	NA	-8	True	AATAAA	-16	NA	83122229	83110922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_83112796_83114714_83114859_83122120
transcript_46386.known	chr15	-	1974	3	FSM	ENSMUSG00000047878.14	ENSMUST00000164614.3	1974	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	34	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGGCTTTTTTTTTT	2266	False	NA	NA	False	NA	NA	NA	83135932	83111080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83112796_83114714_83114859_83135817
transcript_46387.known	chr15	-	2092	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	20.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	2223	False	NA	-8	True	AATAAA	-16	NA	83135975	83110922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83112796_83114714_83114859_83135900
transcript_46389.known	chr15	-	375	2	FSM	ENSMUSG00000047878.14	ENSMUST00000229687.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACATCTTCTTCCTAGAGA	2268	False	NA	NA	False	NA	NA	NA	83135930	83112533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83112796_83135817
transcript_4639.known	chr1	+	1828	11	FSM	ENSMUSG00000042451.13	ENSMUST00000038445.13	1828	11	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	2.5219040425837	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCATGGGGTTTCTGTGG	9945	False	NA	NA	False	AATAAA	-14	NA	134121185	134128969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134121465_134121551_134121687_134122314_134122483_134124707_134124797_134125088_134125285_134125467_134125608_134126138_134126299_134127451_134127589_134127687_134127875_134128132_134128186_134128685
transcript_46392.known	chr15	-	2461	16	FSM	ENSMUSG00000054277.9	ENSMUST00000226124.2	2461	16	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_5	14.6272196796095	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATTTCAGATGACT	3598	False	NA	-108	True	AGTAAA	-26	NA	83234375	83184021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194583_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
transcript_46394.nic	chr15	-	2976	14	ISM	ENSMUSG00000054277.9	ENSMUST00000067215.9	2619	16	-39	5738	-39	-2902	5prime_fragment	FALSE	canonical	3	20	junction_7	10.9787314558057	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAGAGCTCTTTGAAGGG	3486	False	NA	NA	False	NA	NA	NA	83234487	83189677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
transcript_46396.nic	chr15	-	806	8	ISM	ENSMUSG00000054277.9	ENSMUST00000226124.2	2461	16	-112	24286	-39	6482	5prime_fragment	FALSE	canonical	3	20	junction_1	13.8018040820165	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTAAGTATCATGTTATA	3486	False	NA	NA	False	TATAAA	-26	NA	83234487	83208307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
transcript_46397.known	chr15	-	1186	3	FSM	ENSMUSG00000054277.9	ENSMUST00000226816.2	1186	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	31.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGGTTGCCTGTGTTGTC	NA	False	NA	-27	True	AATATA	-15	NA	83189542	83183940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83184904_83187303_83187426_83189441
transcript_46399.known	chr15	-	2270	4	FSM	ENSMUSG00000075511.10	ENSMUST00000100370.2	2270	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	6.97614984548545	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAGGAAAGATGAAG	250	False	NA	NA	False	NA	NA	NA	83251478	83241760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83243152_83248020_83248130_83249229_83249712_83251190
transcript_46401.nic	chr15	-	2249	3	NIC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	-55	-1	intron_retention	FALSE	canonical	3	28	junction_1	13	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTCCAGCTTAAGTCTC	190	False	NA	NA	False	AATAAA	-19	NA	83251538	83241735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_83243152_83249229_83249715_83251190
transcript_46405.nic	chr15	-	3284	12	NIC	ENSMUSG00000016664.17	novel	3083	12	NA	NA	-7	0	intron_retention	FALSE	canonical	3	37	junction_10	226.521303250812	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCTTGCATCCACCC	7100	False	NA	0	True	AATAAA	-27	NA	83348814	83260322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83337067_83337167_83348659
transcript_46408.known	chr15	-	3186	11	FSM	ENSMUSG00000016664.17	ENSMUST00000165095.9	3186	11	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_10	172.10531659423	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGCATCCACCCTCAT	NA	False	NA	4	True	AATAAA	-31	NA	83317016	83260318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316864
transcript_46409.known	chr15	-	3103	11	FSM	ENSMUSG00000016664.17	ENSMUST00000231184.2	3103	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_10	180.758512939225	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCTTGCATCCACCC	NA	False	NA	0	True	AATAAA	-27	NA	83317025	83260322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316952
transcript_4641.known	chr1	+	1495	3	FSM	ENSMUSG00000026459.6	ENSMUST00000027730.6	1495	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATCTGCAATGATATTA	NA	False	NA	NA	False	AATAAA	-16	NA	134217726	134220286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134218265_134218830_134218913_134219411
transcript_46411.known	chr15	-	3693	11	FSM	ENSMUSG00000016664.17	ENSMUST00000171436.8	3693	11	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_5	57.2486681067778	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCACTTTGCTCAG	7107	False	NA	NA	False	AGTAAA	-19	NA	83348807	83259807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83348659
transcript_46422.nnic	chr15	-	2212	13	NNC	ENSMUSG00000022442.17	novel	2060	12	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	26.455413224686	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTTTATCTTATTATT	NA	False	NA	NA	False	NA	NA	NA	83395102	83367969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83393853_83393998_83394934
transcript_46425.known	chr15	-	2060	12	FSM	ENSMUSG00000022442.17	ENSMUST00000016897.12	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_11	7.21110255092798	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTTTATCTTATTATT	NA	False	NA	NA	False	NA	NA	NA	83395094	83367969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
transcript_46430.known	chr15	+	942	5	FSM	ENSMUSG00000016758.5	ENSMUST00000016902.5	942	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7.58287544405155	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCCTTAGGTCGTCCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	83411062	83428835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_83411138_83425495_83425644_83427265_83427365_83427780_83427899_83428333
transcript_46432.known	chr15	+	837	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	54.5119762580257	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83447792	83458404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
transcript_46433.nnic	chr15	+	929	4	NNC	ENSMUSG00000041736.8	novel	837	4	NA	NA	6026	0	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	92.1013934024164	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83454101	83458404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_83454247_83455585_83455797_83456400_83456540_83457970
transcript_46434.known	chr15	-	1917	4	FSM	ENSMUSG00000048755.10	ENSMUST00000061882.10	1917	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_2	37.1423687391577	663	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGCTCTCTCTCTCTGTG	8051	False	NA	0	True	AATAAA	-23	NA	83439936	83430997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83432144_83433318_83433537_83436734_83436823_83439471
transcript_46436.known	chr15	-	3774	14	FSM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_9	15.0977093760069	792	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTCAGGTACTTCACATG	4671	False	NA	NA	False	AATATA	-19	NA	83479358	83459290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245_83466441_83466546_83466664_83468856_83468934_83471051_83471186_83471274_83471435_83472703_83472903_83475579_83475750_83479149
transcript_46460.known	chr15	-	1319	8	FSM	ENSMUSG00000018865.10	ENSMUST00000229826.2	1319	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	10.0285307284481	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTGCATTTCCAGGGG	NA	False	NA	NA	False	AATAAA	-16	NA	83989810	83961345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83961784_83962969_83963099_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
transcript_46463.known	chr15	-	2383	7	FSM	ENSMUSG00000018865.10	ENSMUST00000082365.6	2383	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	29.8105126870818	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGTCTGTGTGC	NA	False	NA	-1	True	AATAAA	-17	NA	83989955	83960297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_83961784_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
transcript_46471.known	chr15	+	4629	15	FSM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	0	0	0	0	multi-exon	FALSE	canonical	3	1573	junction_6	135.39963524504	1686	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCATCGTCGATTGTGT	NA	False	NA	NA	False	NA	NA	NA	84076441	84101468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
transcript_46490.nnic	chr15	+	3083	9	NNC	ENSMUSG00000041653.6	novel	1313	8	NA	NA	-83	2283	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	14.5425023637612	76	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTCTCTGTCTCTTCTG	NA	False	NA	10	True	AATAAA	-45	NA	84051954	84073720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_84052262_84055282_84055516_84056916_84056983_84058468_84058679_84061016_84061078_84063380_84063537_84065120_84065254_84070177_84070283_84071908
transcript_46492.known	chr15	+	3784	13	FSM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	7.38052994182818	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGCTTTGATCAGACC	NA	False	NA	79	True	AATAAA	-16	NA	84116243	84199889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_84116388_84155431_84155522_84157699_84157771_84166962_84167066_84174587_84174729_84176982_84177099_84179757_84179817_84182166_84182187_84187608_84187671_84188035_84188105_84193053_84193156_84196903_84196977_84197155
transcript_46497.known	chr15	+	2619	13	FSM	ENSMUSG00000022439.10	ENSMUST00000023074.9	2619	13	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_2	5.54464205837992	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATGACTTAATGACAGCC	NA	False	NA	NA	False	AATAAA	-20	NA	84208920	84227143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_84209033_84211188_84211285_84212495_84212561_84213064_84213168_84214223_84214365_84215179_84215296_84216491_84216548_84216891_84216915_84218542_84218602_84218786_84218856_84221985_84222088_84225054_84225128_84225539
transcript_46499.known	chr15	-	4426	1	FSM	ENSMUSG00000055745.5	ENSMUST00000069476.5	4426	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCGTATCTGCTATA	5027	False	NA	-17	True	ATTAAA	-14	NA	84442024	84437598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_84437600_84442000
transcript_465.nnic	chr1	-	3239	8	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	397	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_7	145.124436401374	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAACACTTATGCTAC	NA	False	NA	-58	True	AATAAA	-10	NA	13196990	13183680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13196261
transcript_46500.nnic	chr15	+	1723	9	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-6449	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	42.0979141407267	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	8421	False	NA	4	True	AATAAA	-14	NA	84547371	84587873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_84547463_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_46503.known	chr15	+	1830	8	FSM	ENSMUSG00000036106.16	ENSMUST00000065499.5	1830	8	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_7	10.3844467687921	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	NA	False	NA	4	True	AATAAA	-14	NA	84565202	84587873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_46507.known	chr15	+	1527	13	FSM	ENSMUSG00000078954.10	ENSMUST00000006029.11	1527	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.837800843019	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_84604309_84614744_84614755_84617098_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
transcript_46510.nnic	chr15	+	1663	13	NNC	ENSMUSG00000078954.10	novel	1544	12	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	72.9552754927443	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	NA	False	NA	9	True	ATTAAA	-16	NA	84604264	84656405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_84604329_84604580_84604715_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
transcript_46512.known	chr15	+	1544	12	FSM	ENSMUSG00000078954.10	ENSMUST00000172307.9	1544	12	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	58.989143138924	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_84604329_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
transcript_46516.known	chr15	-	3639	13	FSM	ENSMUSG00000016624.16	ENSMUST00000159939.8	3639	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.72677996249965	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTCGGTGGTCCTGTGT	NA	False	NA	-7	True	ATTAAA	-10	NA	84740250	84669584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_84671651_84675265_84675370_84675554_84675631_84675983_84676143_84678096_84678120_84679280_84679336_84681523_84681601_84682843_84682896_84687654_84687787_84688960_84689312_84692266_84692360_84738939_84739006_84739865
transcript_46521.known	chr15	+	4766	8	FSM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_4	38.703477668983	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTGGGTACTGTTCTGTT	NA	False	NA	19	True	AATAAA	-19	NA	84807611	84827164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
transcript_46529.nic	chr15	+	1373	7	ISM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	-22	4584	-22	-1628	5prime_fragment	FALSE	canonical	3	399	junction_4	35.90109871423	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAACGAATTTAAAGAGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	84807589	84822580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558
transcript_46531.nic	chr15	+	1420	6	ISM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	-91	5395	-91	-2439	5prime_fragment	FALSE	canonical	3	399	junction_4	29.2479059079449	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGGGGGTGGGGTCCT	NA	False	NA	NA	False	AGTAAA	-28	NA	84807520	84821769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687
transcript_46539.nnic	chr15	-	2733	11	NNC	ENSMUSG00000036046.15	novel	6845	10	NA	NA	-60	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	82.6447820494434	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTGCCTCAGTTTGCC	NA	False	NA	-12	True	ATTAAA	-17	NA	84872261	84832200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_84833480_84833751_84833911_84834812_84834976_84837330_84837523_84838102_84838244_84839590_84839693_84839846_84839925_84840006_84840130_84844670_84844823_84871809_84871945_84872052
transcript_4654.nic	chr1	-	3921	26	ISM	ENSMUSG00000026458.14	ENSMUST00000189361.2	5238	28	3816	880	-1846	0	3prime_fragment	FALSE	canonical	0	0	junction_6	17.6813574139544	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTCCTGCTTGGACTA	NA	False	NA	-6	True	AATAAA	-13	NA	134256850	134226118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239266_134239294_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553_134254701_134254995_134255188_134255737_134255828_134256030_134256106_134256381
transcript_46544.nic	chr15	+	2633	10	NIC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	67.2724330384562	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921275	84947031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84944289_84944391_84945732
transcript_46545.nic	chr15	+	2784	10	NIC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	65.1689163199833	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921216	84947031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_84921446_84922972_84923166_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
transcript_46552.known	chr15	+	2518	9	FSM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.0742951742362	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921289	84947031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
transcript_46555.known	chr15	+	1974	5	FSM	ENSMUSG00000022434.9	ENSMUST00000229153.2	1974	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	16.8430252627015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGGAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	84921325	84936217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894
transcript_46556.known	chr15	-	4047	25	FSM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_19	18.7071269098764	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTACTCTGGTCTTGT	NA	False	NA	-6	True	TATAAA	-17	NA	85016165	84948889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_84949307_84950419_84950531_84951937_84952008_84953845_84953998_84954980_84955136_84955782_84955940_84970293_84970390_84973792_84973947_84975072_84975219_84976143_84976286_84980846_84980954_84981705_84981823_84982096_84982235_84991118_84991266_84994852_84995033_84996887_84997074_84998879_84999088_85000039_85000123_85004818_85004960_85005789_85006049_85007921_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
transcript_46567.nic	chr15	-	1368	8	ISM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-59	51205	-59	-44998	5prime_fragment	FALSE	canonical	3	89	junction_2	18.5988808089879	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGAAGAGCATAAAAAACGA	NA	False	NA	NA	False	GATAAA	-9	NA	85016224	85000094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_85000123_85004818_85004960_85005789_85006049_85007921_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
transcript_46572.nic	chr15	-	932	5	ISM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-59	59040	-59	-52833	5prime_fragment	FALSE	canonical	3	115	junction_1	12.49749974995	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTGAAGTAAGTTTTTAA	NA	False	NA	NA	False	AAAAAG	-43	NA	85016224	85007929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
transcript_46575.nic	chr15	-	687	4	ISM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-59	62793	-59	-56586	5prime_fragment	FALSE	canonical	3	116	junction_3	11.8977121983832	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAGAAAGAAGAGGTAAGG	NA	False	NA	NA	False	NA	NA	NA	85016224	85011682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_85011873_85011959_85012073_85013871_85014061_85016029
transcript_46576.nic	chr15	-	608	4	ISM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-59	62872	-59	-56665	5prime_fragment	FALSE	canonical	3	116	junction_3	11.8977121983832	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACAAAAAGCTGAAGAAGA	NA	False	NA	NA	False	AAAAAG	-4	NA	85016224	85011761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_85011873_85011959_85012073_85013871_85014061_85016029
transcript_46580.known	chr15	+	3659	17	FSM	ENSMUSG00000006369.15	ENSMUST00000057410.14	3659	17	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_16	137.738202761616	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGACGTTTTTATCATT	NA	False	NA	NA	False	AATAAA	-13	NA	85090149	85170736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85147459_85147603_85149450_85149583_85169240
transcript_46586.known	chr15	+	2273	15	FSM	ENSMUSG00000006369.15	ENSMUST00000109432.4	2273	15	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_14	63.5701845785187	737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTACCTTGGTTT	NA	False	NA	35	True	AATAAA	-25	NA	85090205	85136086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85135645
transcript_4659.nic	chr1	-	3506	22	NIC	ENSMUSG00000026458.14	novel	6067	29	NA	NA	207	6	intron_retention	FALSE	canonical	0	0	junction_6	17.494540774656	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCTTGGACTAATTGGC	NA	False	NA	0	True	AATAAA	-19	NA	134254797	134226112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_134226875_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239266_134239294_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553
transcript_46594.known	chr15	+	1937	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	2137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220445	85347413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
transcript_46608.known	chr15	-	3365	4	FSM	ENSMUSG00000022382.16	ENSMUST00000023015.15	3365	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGTGTGTGTGACGTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	85466022	85419641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_85422070_85427869_85428142_85443107_85443331_85465580
transcript_46612.known	chr15	-	786	5	FSM	ENSMUSG00000064284.13	ENSMUST00000134631.8	786	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	144.324937207677	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACCTCCTTTGATTGAC	8128	False	NA	NA	False	NA	NA	NA	85695855	85691400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695043_85695250_85695839
transcript_46613.known	chr15	-	761	5	FSM	ENSMUSG00000064284.13	ENSMUST00000144067.8	761	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	131.723906334424	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAGCTCTAGGTCTGGC	8138	False	NA	NA	False	NA	NA	NA	85695845	85691444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695751
transcript_46614.known	chr15	-	997	5	FSM	ENSMUSG00000064284.13	ENSMUST00000071876.13	997	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	106.509389257473	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8086	False	NA	0	True	ATTAAA	-15	NA	85695897	85691172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695839
transcript_46615.nnic	chr15	-	936	4	NNC	ENSMUSG00000064284.13	novel	997	5	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	154.740643228166	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8096	False	NA	0	True	ATTAAA	-15	NA	85695887	85691172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695743
transcript_46616.known	chr15	-	566	4	FSM	ENSMUSG00000064284.13	ENSMUST00000150995.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	150.534602888062	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTGTATCCAGCTGGAG	8085	False	NA	NA	False	NA	NA	NA	85695898	85691457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695839
transcript_4662.nic	chr1	-	4690	21	ISM	ENSMUSG00000026458.14	ENSMUST00000186730.7	4674	22	279	0	279	0	3prime_fragment	TRUE	canonical	2	30	junction_19	10.0641691162261	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGGTGTCAGTTTCTT	NA	False	NA	-1	True	AATAAA	-23	NA	134254725	134224521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553
transcript_46620.known	chr15	+	3749	14	FSM	ENSMUSG00000035944.18	ENSMUST00000146088.8	3749	14	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	3.06729262113491	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAATGTAAATAGCAGT	NA	False	NA	NA	False	TTTAAA	-6	NA	85716506	85743023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_85716621_85717347_85717426_85718690_85718773_85720220_85720393_85722906_85723081_85725665_85725742_85728652_85728773_85730531_85730592_85731835_85731875_85735717_85735800_85737020_85737187_85737785_85737946_85738176_85738251_85740671
transcript_46633.known	chr15	+	2641	12	FSM	ENSMUSG00000022385.12	ENSMUST00000170629.3	2641	12	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	58.9672832668062	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTATAAAGTTTATTAAA	7137	False	NA	-13	True	ATTAAA	-18	NA	85743945	85760731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
transcript_46645.known	chr15	+	2692	11	FSM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_6	54.9377829913076	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7338	False	NA	30	True	ATTAAA	-41	NA	85744146	85760774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
transcript_46647.known	chr15	+	1526	11	FSM	ENSMUSG00000022386.13	ENSMUST00000023019.12	1526	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	10.36532681588	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATGTGTCTGGGGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	85763520	85781593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776767_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
transcript_46648.nic	chr15	+	1476	11	NIC	ENSMUSG00000022386.13	novel	1526	11	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	15.6745015869724	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATGTGTCTGGGGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	85763515	85781593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776822_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
transcript_4666.nic	chr1	-	3165	21	ISM	ENSMUSG00000026458.14	ENSMUST00000186730.7	4674	22	207	1597	207	0	3prime_fragment	FALSE	canonical	2	30	junction_19	10.0641691162261	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTCCTGCTTGGACTA	NA	False	NA	-6	True	AATAAA	-13	NA	134254797	134226118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553
transcript_46663.nnic	chr15	+	4227	20	NNC	ENSMUSG00000035900.19	novel	4292	19	NA	NA	35	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	18.5204835317361	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGAGTCTGAGGAATC	NA	False	NA	NA	False	AATAAA	-13	NA	85942962	86021819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_85943163_85945658_85945724_85975513_85975725_85984980_85985102_86002663_86002785_86006379_86006454_86009324_86009458_86010057_86010084_86011189_86011282_86011750_86011843_86012865_86012915_86013850_86013923_86014347_86014392_86014457_86014568_86014703_86014859_86016054_86016200_86017015_86017110_86017875_86017961_86019081_86019151_86019550
transcript_46666.nic	chr15	+	4192	19	NIC	ENSMUSG00000035900.19	novel	4292	19	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_12	6.93265666213622	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGAGTCTGAGGAATC	NA	False	NA	NA	False	AATAAA	-13	NA	85942932	86021819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_85943163_85975513_85975725_85984980_85985102_86002663_86002785_86006379_86006454_86009324_86009458_86010057_86010084_86011189_86011282_86011750_86011843_86012865_86012915_86013850_86013923_86014347_86014392_86014457_86014568_86014703_86014859_86016054_86016200_86017015_86017110_86017875_86017961_86019081_86019151_86019550
transcript_46672.known	chr15	-	4518	13	FSM	ENSMUSG00000035891.17	ENSMUST00000044332.16	4518	13	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_10	4.62105687767059	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCCTCCCCTCATCCTC	NA	False	NA	-14	True	AATAAA	-17	NA	86070342	86023329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86039174_86039321_86040788_86040853_86043294_86043421_86049168_86049292_86050022_86050137_86069707
transcript_46676.known	chr15	-	2162	8	FSM	ENSMUSG00000035891.17	ENSMUST00000156546.2	2162	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	5.62429133857986	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGACTTGCAAACGGG	NA	False	NA	NA	False	TATAAA	-35	NA	86036649	86024521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86036605
transcript_46678.nnic	chr15	-	2794	3	NNC	ENSMUSG00000035891.17	novel	4518	13	NA	NA	8734	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCCTCCCCTCATCCTC	6277	False	NA	-14	True	AATAAA	-17	NA	86027915	86023329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_86025814_86026882_86027092_86027814
transcript_46680.nnic	chr15	+	2223	14	NNC	ENSMUSG00000051864.11	novel	3229	13	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_13	22.9039672540879	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTTTTTATTGCATT	NA	False	NA	8	True	AATAAA	-17	NA	86098614	86382704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013_86381139_86382189
transcript_46683.known	chr15	+	3229	13	FSM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_12	8.71779788708135	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTTTTTATTGCATT	NA	False	NA	8	True	AATAAA	-17	NA	86098659	86382704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
transcript_46687.known	chr15	+	2649	4	FSM	ENSMUSG00000054863.10	ENSMUST00000230414.2	2649	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCATGGCTTTTGTTCCCT	NA	False	NA	NA	False	AATAAA	-19	NA	87428499	87643563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_87428805_87565680_87565831_87604702_87604831_87641497
transcript_46688.known	chr15	+	2603	4	FSM	ENSMUSG00000054863.10	ENSMUST00000068088.8	2603	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGGCTTTTGTTCCCTGG	NA	False	NA	NA	False	AATAAA	-21	NA	87509430	87643565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_87509688_87565680_87565831_87604702_87604831_87641497
transcript_46691.nnic	chr15	-	2637	8	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	-7526	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_7	224.216549845211	56	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	7616	False	NA	-5	True	NA	NA	NA	88592593	88571236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88592298
transcript_46693.nnic	chr15	-	2506	8	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	-7537	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	226.062480075662	54	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	7605	False	NA	-5	True	NA	NA	NA	88592604	88571236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88592440
transcript_46697.nnic	chr15	-	3030	8	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	-7526	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_7	242.987863978464	55	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	7616	False	NA	-5	True	NA	NA	NA	88592593	88571236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88592298
transcript_46701.nnic	chr15	-	2370	8	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	-7526	-267	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_7	224.216549845211	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTGGCCCTCTCATTCC	7616	False	NA	-7	True	AATAAA	-14	NA	88592593	88571503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88592298
transcript_46702.nnic	chr15	-	2239	8	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	-7537	-267	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	226.062480075662	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTGGCCCTCTCATTCC	7605	False	NA	-7	True	AATAAA	-14	NA	88592604	88571503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88592440
transcript_46705.nnic	chr15	-	2763	8	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	-7526	-267	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_7	242.987863978464	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTGGCCCTCTCATTCC	7616	False	NA	-7	True	AATAAA	-14	NA	88592593	88571503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88592298
transcript_46712.known	chr15	+	5425	3	FSM	ENSMUSG00000034333.16	ENSMUST00000041297.15	5425	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	12	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGACTGATGATGGCTT	NA	False	NA	35	True	ATTAAA	-22	NA	88635862	88668719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_88636006_88638962_88639137_88663611
transcript_46716.known	chr15	-	2130	10	FSM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.1691718917785	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTGTCTTGTTGTTGGTC	9244	False	NA	0	True	AATAAA	-17	NA	88703521	88689446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
transcript_46719.known	chr15	+	1366	10	FSM	ENSMUSG00000023272.5	ENSMUST00000024042.5	1366	10	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	99.7619388566824	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGACGTGTTGGTTTGTTT	NA	False	NA	17	True	AATAAA	-26	NA	88703848	88710886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88705430_88706161_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
transcript_46722.known	chr15	+	2427	6	FSM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	0	0	0	0	multi-exon	TRUE	canonical	3	800	junction_3	47.4021096576935	2109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCTGTTTATTGGACT	NA	False	NA	30	True	ATTAAA	-20	NA	88746388	88749929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_88746956_88747040_88747151_88747243_88747295_88747381_88747752_88748518_88748696_88748777
transcript_46723.known	chr15	-	1234	2	FSM	ENSMUSG00000093394.2	ENSMUST00000176618.2	1234	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCCAATGTGTGACAGT	NA	False	NA	-3	True	NA	NA	NA	88775719	88773982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_88775099_88775601
transcript_46724.known	chr15	-	485	2	FSM	ENSMUSG00000093394.2	ENSMUST00000176338.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88775686	88774715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_88775099_88775584
transcript_46726.nnic	chr15	+	4095	28	NNC	ENSMUSG00000015365.16	novel	4133	27	NA	NA	-28	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	15.8574756379344	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGACCCCTTTCTGTCTCAG	2879	False	NA	0	True	AATAAA	-15	NA	88867083	88939351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565_88895625_88896102_88896209_88896274_88896399_88902352_88902453_88904463_88904643_88905366_88905514_88906203_88906326_88907815_88907916_88908869_88909035_88910665_88910840_88931009_88931160_88937580_88937689_88938429_88938568_88938713_88938834_88939018
transcript_46729.nic	chr15	+	2491	14	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	-28	43265	-28	-11738	5prime_fragment	FALSE	canonical	3	36	junction_13	10.1817797586303	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTGTTTCAAAGTATT	2879	False	NA	NA	False	AATAAA	-15	NA	88867083	88896086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565
transcript_4673.known	chr1	-	1689	9	FSM	ENSMUSG00000042305.13	ENSMUST00000191237.7	1689	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	283.900923519104	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTCATGGAAGAACGTT	NA	False	NA	67	True	NA	NA	NA	134289679	134275419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
transcript_46730.nic	chr15	+	2044	12	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	-28	49215	-28	10862	5prime_fragment	TRUE	canonical	3	47	junction_4	7.60382678775509	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATAGAACTACTCGTAAG	2879	False	NA	NA	False	AAAAAG	-16	NA	88867083	88890136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899
transcript_46735.known	chr15	+	1422	10	FSM	ENSMUSG00000015363.14	ENSMUST00000169891.8	1422	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	30.2985148150862	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCCAGGCTTCCCAGCA	NA	False	NA	NA	False	AATAAA	-16	NA	88960296	88970333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969661_88969728_88969841_88969958
transcript_46737.known	chr15	+	2396	10	FSM	ENSMUSG00000015363.14	ENSMUST00000169870.8	2396	10	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	29.0546526309673	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCCGCTTTGTGAAGT	NA	False	NA	3	True	AATAAA	-13	NA	88960274	88971274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_88960345_88965182_88965248_88965555_88965657_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
transcript_46741.known	chr15	+	1941	10	FSM	ENSMUSG00000015363.14	ENSMUST00000165690.2	1941	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	29.3749704491577	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGGCTTCCCAGCAGCC	NA	False	NA	NA	False	AATAAA	-19	NA	88960326	88970336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_88960902_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
transcript_46749.known	chr15	-	494	4	FSM	ENSMUSG00000087331.9	ENSMUST00000161735.8	494	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGTCATGGTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	88959352	88955400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_88955540_88955773_88955952_88958275_88958402_88959301
transcript_46750.known	chr15	-	7635	25	FSM	ENSMUSG00000051786.16	ENSMUST00000109353.9	7635	25	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_22	13.0596920161065	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGAGTTTGCTTAATGG	NA	False	NA	NA	False	TATAAA	-16	NA	89007290	88982559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_88984707_88984787_88984988_88985068_88985283_88985355_88985489_88985564_88985760_88985977_88986120_88986203_88986373_88986456_88986611_88986747_88986807_88987019_88988494_88988621_88988694_88988936_88989076_88990274_88990391_88990471_88990561_88990645_88990728_88991615_88991766_88992153_88992294_88992763_88992856_88993149_88993260_88993423_88993500_88994248_88994371_88995318_88995493_89000247_89000459_89004712_89004877_89006279
transcript_46754.known	chr15	+	2383	9	FSM	ENSMUSG00000035757.18	ENSMUST00000082439.6	2383	9	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_2	3.38193731461717	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGGTCACTGCCTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	88973286	88984543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_88973869_88976906_88977111_88978339_88978527_88979801_88979933_88980741_88981023_88982834_88982980_88983465_88983652_88983789_88983947_88984033
transcript_46756.known	chr15	+	2688	5	FSM	ENSMUSG00000035757.18	ENSMUST00000130700.8	2688	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	12.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88973286	88982383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_88973869_88976906_88977053_88978339_88978527_88979801_88979933_88980741
transcript_46759.nic	chr15	-	2399	3	ISM	ENSMUSG00000051786.16	ENSMUST00000041656.14	5357	25	-288	14709	-62	3320	5prime_fragment	FALSE	canonical	3	50	junction_1	1	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTAAAGACTCCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	89007377	88999321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_89000459_89004712_89004877_89006279
transcript_46760.nic	chr15	-	2204	3	ISM	ENSMUSG00000051786.16	ENSMUST00000041656.14	5357	25	-288	14904	-62	3125	5prime_fragment	FALSE	canonical	3	50	junction_1	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTTGTATAATATGTTTA	NA	False	NA	NA	False	NA	NA	NA	89007377	88999516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_89000459_89004712_89004877_89006279
transcript_46766.known	chr15	-	2376	20	FSM	ENSMUSG00000062906.13	ENSMUST00000129398.8	2376	20	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	9.07555237820426	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATCTCTGTCTCCGTTAC	NA	False	NA	-3	True	AATAAA	-17	NA	89012856	89007509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008457_89008734_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010832_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012387_89012523_89012592
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transcript_46779.known	chr15	-	2461	12	FSM	ENSMUSG00000053137.8	ENSMUST00000088823.5	2461	12	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	5.74096487412616	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGGCTCTGGATCCCAT	NA	False	NA	-13	True	AATAAA	-28	NA	89033831	89026689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89028021_89028343_89028518_89028595_89028675_89029298_89029379_89029577_89029650_89030004_89030120_89030205_89030254_89030341_89030372_89030474_89030587_89030673_89030733_89030911_89031042_89033600
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transcript_46794.nic	chr15	-	2296	20	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	14	0	intron_retention	FALSE	canonical	3	17	junction_19	26.5207805419452	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGTCTGGTCCCTGACT	NA	False	NA	-4	True	AGTAAA	-14	NA	89080685	89069019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89077137_89077322_89080421
transcript_46802.nic	chr15	-	2249	19	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	-123	0	intron_retention	FALSE	canonical	3	70	junction_7	13.724358808023	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGTCTGGTCCCTGACT	NA	False	NA	-4	True	AGTAAA	-14	NA	89080822	89069019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
transcript_46854.known	chr15	+	2072	8	FSM	ENSMUSG00000036561.10	ENSMUST00000226779.2	2072	8	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_2	4.65109159888563	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTGCTGCTGTTATGAG	6669	False	NA	NA	False	NA	NA	NA	89095761	89147471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_89095983_89126362_89126492_89127507_89127663_89130460_89130544_89137221_89137465_89140865_89141053_89143268_89143407_89146555
transcript_46856.known	chr15	-	6165	41	FSM	ENSMUSG00000036529.18	ENSMUST00000144585.9	6165	41	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_22	71.0688002923927	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTGTACGCCTGCATCAG	NA	False	NA	-15	True	TATAAA	-17	NA	89199458	89172485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89172929_89173014_89173147_89173224_89173313_89173807_89174020_89174125_89174234_89177638_89177870_89177941_89178073_89178147_89178275_89178346_89178533_89178605_89178708_89179335_89179516_89179597_89179780_89180154_89180233_89183685_89183824_89183907_89184105_89184423_89184632_89184730_89184868_89184975_89185155_89186045_89186174_89186384_89186581_89186654_89186729_89186807_89186981_89187079_89187349_89187422_89187582_89187675_89187745_89188012_89188163_89188887_89189001_89189083_89189289_89189365_89189465_89189546_89189676_89189746_89189861_89190197_89190276_89190382_89190497_89190571_89190681_89190780_89190914_89191032_89191139_89191695_89191807_89191889_89192049_89192224_89192363_89192687_89192774_89199264
transcript_46865.known	chr15	-	6190	40	FSM	ENSMUSG00000036529.18	ENSMUST00000123791.8	6190	40	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_12	87.3656082615084	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGCTCCTTTGTCTCAA	NA	False	NA	32	True	NA	NA	NA	89199514	89172438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89172929_89173014_89173147_89173224_89173313_89173807_89174020_89174125_89174234_89177638_89177870_89177941_89178073_89178147_89178275_89178346_89178533_89178605_89178708_89179335_89179516_89179597_89179780_89183685_89183824_89183907_89184105_89184423_89184632_89184730_89184868_89184975_89185155_89186045_89186174_89186384_89186581_89186654_89186729_89186807_89186981_89187079_89187349_89187422_89187582_89187675_89187745_89188012_89188163_89188887_89189001_89189083_89189289_89189365_89189465_89189546_89189676_89189746_89189861_89190197_89190276_89190382_89190497_89190571_89190681_89190780_89190914_89191032_89191139_89191695_89191807_89191889_89192049_89192224_89192363_89192687_89192774_89199264
transcript_46867.known	chr15	+	1298	3	FSM	ENSMUSG00000054136.7	ENSMUST00000066991.7	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	15	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGCCACTCTCTTGTG	NA	False	NA	NA	False	ATTAAA	-19	NA	89206922	89208934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_89207337_89207479_89207604_89208174
transcript_46872.nic	chr15	-	2610	15	NIC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	79.1957340120936	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTACTAGTGGTTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	89239880	89235345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558_89239614_89239788
transcript_46877.known	chr15	-	2906	14	FSM	ENSMUSG00000022614.9	ENSMUST00000023283.6	2906	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	66.7675469479281	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCTGCGGTGTGGCGAG	NA	False	NA	NA	False	AATAAA	-19	NA	89239862	89235206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558
transcript_46878.nnic	chr15	-	2577	14	NIC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	83.9641371739205	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTACTAGTGGTTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	89239902	89235345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239788
transcript_46881.nnic	chr15	-	2555	13	NNC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	-2	0	intron_retention	FALSE	canonical	2	5	junction_12	68.0714493912258	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTACTAGTGGTTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	89239864	89235345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238699_89239558
transcript_46884.nic	chr15	-	2883	13	NIC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	-8	0	intron_retention	FALSE	canonical	3	165	junction_11	30.2002575412124	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTACTAGTGGTTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	89239870	89235345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89239021_89239558
transcript_46894.known	chr15	-	2815	13	FSM	ENSMUSG00000022614.9	ENSMUST00000230112.2	2815	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	68.2647521704202	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACCCATTTACTAGTGG	NA	False	NA	-12	True	AATAAA	-12	NA	89239836	89235350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238658_89239021_89239558
transcript_46895.known	chr15	-	3262	13	FSM	ENSMUSG00000022614.9	ENSMUST00000231067.2	3262	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	69.3126471544375	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTAGTGGTTTTTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	89239815	89235341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766
transcript_469.known	chr1	-	2564	8	FSM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_7	84.2663415993041	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAACACTTATGCTAC	NA	False	NA	-58	True	AATAAA	-10	NA	13197387	13183680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197333
transcript_46901.known	chr15	+	3255	20	FSM	ENSMUSG00000008690.16	ENSMUST00000145259.8	3255	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	269.960005245468	1624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239965	89257029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_89240130_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
transcript_46904.known	chr15	+	3223	20	FSM	ENSMUSG00000008690.16	ENSMUST00000036987.12	3223	20	0	0	0	0	multi-exon	TRUE	canonical	1	145	junction_1	244.22211859964	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239921	89257029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_89240054_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
transcript_4691.known	chr1	-	725	4	FSM	ENSMUSG00000042305.13	ENSMUST00000188205.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	71.4749373323731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTGGACTTGTTGATAT	NA	False	NA	NA	False	NA	NA	NA	134289691	134283179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_134283455_134288494_134288663_134289271_134289362_134289499
transcript_46943.nic	chr15	-	1370	4	ISM	ENSMUSG00000022615.8	ENSMUST00000023285.5	2037	11	2885	-291	2885	291	3prime_fragment	FALSE	canonical	3	35	junction_3	10.6770782520313	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTGTGCATGTGCTCTG	NA	False	NA	-10	True	ATTAAA	-11	NA	89258357	89255842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_89256669_89257625_89257806_89257885_89258027_89258134
transcript_46945.known	chr15	-	1145	3	FSM	ENSMUSG00000091780.4	ENSMUST00000167643.4	1145	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	1.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCATGTGCTCTGTAC	NA	False	NA	-7	True	ATTAAA	-14	NA	89258021	89255839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89256669_89257625_89257806_89257885
transcript_46946.known	chr15	-	1250	2	FSM	ENSMUSG00000091780.4	ENSMUST00000228977.2	1250	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTGTGCATGTGCTCTG	NA	False	NA	-10	True	ATTAAA	-11	NA	89258049	89255842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89256669_89257625
transcript_46947.known	chr15	-	448	3	FSM	ENSMUSG00000078938.10	ENSMUST00000109314.9	448	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCAAAGGACCCCTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	89294466	89274376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89274643_89281528_89281638_89294393
transcript_46950.known	chr15	-	2895	19	FSM	ENSMUSG00000078937.9	ENSMUST00000109313.9	2895	19	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_15	11.4655953418569	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCTCCATGGGACTAC	5216	False	NA	NA	False	AATAAA	-19	NA	89310066	89300607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89301183_89301347_89301441_89302034_89302149_89302934_89303088_89303178_89303314_89303393_89303559_89304094_89304212_89304290_89304397_89304894_89305081_89305547_89305744_89306327_89306413_89306491_89306600_89307694_89307773_89307858_89307997_89308142_89308245_89308467_89308646_89308919_89309060_89309390_89309551_89310000
transcript_4696.known	chr1	+	2420	9	FSM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_5	130.869925880624	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	7971	False	NA	39	True	AATAAA	-27	NA	134333518	134339474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230_134338331_134338644
transcript_46962.known	chr15	-	1707	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1180	False	NA	NA	False	AATAAA	-23	NA	89314102	89310569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
transcript_46964.nic	chr15	-	1749	11	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_8	112.30422966211	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1179	False	NA	NA	False	AATAAA	-30	NA	89314103	89310562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312782_89312916_89313031_89313251_89313361_89313579
transcript_46966.nic	chr15	-	1912	10	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	-48	0	intron_retention	FALSE	canonical	3	62	junction_3	105.224627451097	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1123	False	NA	NA	False	AATAAA	-30	NA	89314159	89310562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
transcript_46969.known	chr15	-	1416	10	FSM	ENSMUSG00000022617.16	ENSMUST00000171140.8	1416	10	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_9	49.0736408087093	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1640	False	NA	NA	False	AATAAA	-23	NA	89313642	89310569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
transcript_4698.known	chr1	+	1837	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_1	53.3666562565053	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTCGTCGTGTCTGGG	7971	False	NA	43	True	AATAAA	-31	NA	134333518	134339478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
transcript_46984.known	chr15	+	1280	1	FSM	ENSMUSG00000079242.3	ENSMUST00000168646.2	1280	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGGGAAGA	NA	False	NA	NA	False	NA	NA	NA	89313791	89315071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_89313800_89315100
transcript_46985.known	chr15	-	2063	9	FSM	ENSMUSG00000022617.16	ENSMUST00000170334.8	2063	9	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_3	35.8355619462009	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1219	False	NA	NA	False	AATAAA	-30	NA	89314063	89310562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251
transcript_46987.nnic	chr15	+	3286	13	NNC	ENSMUSG00000022619.6	novel	5558	12	NA	NA	134	-2024	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_5	25.6074804609035	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCTGGCTGTTTTTAAG	1392	False	NA	13	True	AATAAA	-13	NA	89338249	89346647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_89338489_89339386_89339493_89340727_89341007_89341122_89341220_89341337_89341987_89342100_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
transcript_46990.known	chr15	+	5558	12	FSM	ENSMUSG00000022619.6	ENSMUST00000023291.6	5558	12	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	12.5005784990103	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGTTGCTTATCTCAGT	1258	False	NA	11	True	AATAAA	-18	NA	89338115	89348671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_89338489_89339386_89339493_89340727_89341007_89341122_89341220_89341337_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
transcript_47.known	ERCC-00143	+	767	1	FSM	ERCC-00143A	DQ668362	767	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00143_+_0_800
transcript_47003.known	chr15	-	3492	9	FSM	ENSMUSG00000022620.15	ENSMUST00000165199.8	3492	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	23.5358768691545	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTTTAGAAGCATCTAT	NA	False	NA	NA	False	NA	NA	NA	89361628	89356678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710_89360859_89361352
transcript_47006.known	chr15	-	1640	9	FSM	ENSMUSG00000022621.17	ENSMUST00000023294.15	1640	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	5.95818764390649	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAAGGGTCTCAGTTACC	-11	True	NA	-4	True	AATAAA	-17	NA	89476126	89466735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_89467634_89467801_89467886_89468112_89468211_89468481_89468594_89470461_89470542_89471116_89471197_89472390_89472421_89474475_89474630_89476022
transcript_47008.known	chr15	+	6644	3	FSM	ENSMUSG00000075470.3	ENSMUST00000100309.3	6644	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	7.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGAATATATTTTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	90108513	90117674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_90108812_90109859_90110058_90111526
transcript_4701.nic	chr1	+	1924	8	ISM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	211	16	-3	-12	intron_retention	FALSE	canonical	3	291	junction_1	56.9597064885811	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATCTCAAGGAATCAT	8182	False	NA	27	True	AATAAA	-15	NA	134333729	134339462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230
transcript_47010.known	chr15	+	6457	3	FSM	ENSMUSG00000075470.3	ENSMUST00000231200.2	6457	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	36.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGAATATATTTTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	90108551	90117674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_90108812_90109859_90110058_90111675
transcript_47011.known	chr15	-	378	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCGTGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	90648859	90648481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_90648500_90648900
transcript_47012.known	chr15	+	2041	13	FSM	ENSMUSG00000078932.9	ENSMUST00000190436.7	2041	13	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_9	6.39172642301489	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTCCAACTAGGAAGCAG	NA	False	NA	NA	False	NA	NA	NA	91083696	91145097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91124845_91125023_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
transcript_47014.nnic	chr15	+	2641	12	NIC	ENSMUSG00000078932.9	novel	2041	13	NA	NA	-60	717	combination_of_known_splicesites	FALSE	canonical	2	5	junction_5	8.52221210564216	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTTCTCTTGATAAT	NA	False	NA	NA	False	ATTAAA	-13	NA	91083636	91145814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
transcript_47017.known	chr15	+	3376	8	FSM	ENSMUSG00000036218.17	ENSMUST00000035399.10	3376	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTGCTTCTAGGTCAT	8320	False	NA	NA	False	AATAAA	-10	NA	92495006	92669700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_92495318_92575381_92575639_92578321_92578425_92641451_92641551_92644122_92644186_92650578_92650681_92655518_92655636_92667376
transcript_47020.known	chr15	-	4427	7	FSM	ENSMUSG00000036197.17	ENSMUST00000230063.2	4427	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	8.55699843532896	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATAATGAGAGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	93173060	93139734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_93143011_93145739_93145913_93146239_93146364_93152181_93152434_93156945_93157072_93159627_93159800_93172756
transcript_47023.known	chr15	-	1870	5	FSM	ENSMUSG00000022634.10	ENSMUST00000133736.2	1870	5	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_2	48.2875501552937	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGCATTTTGTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	93234816	93182161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_93183504_93184290_93184444_93215419_93215490_93234220_93234347_93234637
transcript_47025.known	chr15	-	1676	4	FSM	ENSMUSG00000022634.10	ENSMUST00000080299.7	1676	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	11.0453610171873	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGCATTTTGTTTACAA	NA	False	NA	-1	True	AATAAA	-20	NA	93234689	93182158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_93183504_93184290_93184444_93234220_93234347_93234637
transcript_47028.nnic	chr15	-	1040	9	NNC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	289.359637821172	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTGTGGAATAGTGAC	NA	False	NA	-11	True	AATAAA	-17	NA	93296218	93283990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_93284168_93285113_93285278_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
transcript_4703.known	chr1	+	957	6	FSM	ENSMUSG00000026456.19	ENSMUST00000172496.8	957	6	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_1	62.88083968905	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGGGCAGTTTAGTGA	8210	False	NA	NA	False	NA	NA	NA	134333757	134336604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141
transcript_47030.nic	chr15	-	931	9	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	285.365965691426	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296218	93283993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93291587_93291646_93293467_93293497_93295050_93295137_93296043
transcript_47032.known	chr15	-	877	8	FSM	ENSMUSG00000022635.10	ENSMUST00000076070.9	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_1	44.8289265214016	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGGAATAGTGACTGGT	NA	False	NA	-7	True	AATAAA	-21	NA	93296215	93283986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
transcript_47033.nnic	chr15	-	748	7	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_4	235.838515844116	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296205	93283993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93293467_93293497_93295050_93295137_93296043
transcript_47034.known	chr15	-	624	7	FSM	ENSMUSG00000022635.10	ENSMUST00000161409.2	624	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	316.508908071935	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAGAAAGAGAAGAAGA	NA	False	NA	NA	False	AAAACA	-23	NA	93296215	93285681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_93285741_93288931_93289040_93289334_93289447_93291587_93291646_93293467_93293497_93295050_93295137_93296043
transcript_47036.nic	chr15	-	633	6	ISM	ENSMUSG00000022635.10	ENSMUST00000076070.9	877	8	-15	1643	-15	0	5prime_fragment	FALSE	canonical	3	636	junction_4	33.5940470917096	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACGTATGTCTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	93296230	93285629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
transcript_47039.known	chr15	+	3573	10	FSM	ENSMUSG00000036167.17	ENSMUST00000049122.16	3573	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	61.5210492934966	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCACTTGGTAGAAACAT	NA	False	NA	NA	False	TATAAA	-33	NA	93296277	93389391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_47046.nic	chr15	+	3572	9	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	46.1078897803836	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCACTTGGTAGAAACAT	NA	False	NA	NA	False	TATAAA	-33	NA	93296221	93389391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_47047.nic	chr15	+	3975	9	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	-9	403	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	46.1078897803836	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGTCTCCTCTCGTTTTTC	NA	False	NA	NA	False	AATAAA	-23	NA	93296221	93389794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_47048.known	chr15	+	3351	9	FSM	ENSMUSG00000036167.17	ENSMUST00000068457.15	3351	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	61.4527257328754	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGTTCACT	NA	False	NA	NA	False	TATAAA	-21	NA	93296280	93389379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_47052.nnic	chr15	+	3452	8	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	55	junction_3	53.2326430464831	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCACTTGGTAGAAACAT	NA	False	NA	NA	False	TATAAA	-33	NA	93296221	93389391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
transcript_47055.known	chr15	+	1154	8	FSM	ENSMUSG00000036167.17	ENSMUST00000109256.11	1154	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_5	28.6199587843226	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296230	93387189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_47059.nnic	chr15	+	1043	7	NIC	ENSMUSG00000036167.17	novel	1154	8	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296221	93387189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
transcript_47060.nnic	chr15	+	3245	7	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCACTTGGTAGAAACAT	NA	False	NA	NA	False	TATAAA	-33	NA	93296221	93389391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
transcript_47061.nnic	chr15	+	3648	7	NIC	ENSMUSG00000036167.17	novel	3351	9	NA	NA	-9	403	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGTCTCCTCTCGTTTTTC	NA	False	NA	NA	False	AATAAA	-23	NA	93296221	93389794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
transcript_47065.known	chr15	+	1198	8	FSM	ENSMUSG00000036167.17	ENSMUST00000229071.2	1198	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	58.0576771628957	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAAAAGCAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	93296312	93387295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_93296343_93308552_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_47066.known	chr15	-	4144	8	FSM	ENSMUSG00000036158.13	ENSMUST00000109255.3	4144	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.38505138783324	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTCCGAGTCCGCATCT	NA	False	NA	NA	False	AATAAA	-14	NA	93417404	93396994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_93399185_93400840_93401708_93402909_93403097_93406433_93406638_93407108_93407247_93408551_93408666_93410330_93410515_93417144
transcript_47068.known	chr15	-	4085	8	FSM	ENSMUSG00000036158.13	ENSMUST00000048982.11	4085	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.38505138783324	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTCCGAGTCCGCATCT	NA	False	NA	NA	False	AATAAA	-14	NA	93493772	93396994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_93399185_93400840_93401708_93402909_93403097_93406433_93406638_93407108_93407247_93408551_93408666_93410330_93410518_93493574
transcript_4707.known	chr1	+	2341	5	FSM	ENSMUSG00000026456.19	ENSMUST00000133686.8	2341	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	47.3253367658382	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAATAAAAATAAGAAAA	8218	False	NA	NA	False	NA	NA	NA	134333765	134337737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141
transcript_47070.known	chr15	-	2840	9	FSM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	4.64858849544676	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAATTGTCTCTATGTTTT	NA	False	NA	-3	True	AATAAA	-27	NA	94441428	94420568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_94421533_94423671_94423726_94425677_94425956_94427336_94427419_94429454_94429554_94431364_94431558_94434394_94434555_94437933_94438856_94441340
transcript_47075.known	chr15	-	1471	3	FSM	ENSMUSG00000033356.4	ENSMUST00000147832.2	1471	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	6	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAGAAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	94441374	94434039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_94434555_94437933_94438856_94441340
transcript_47079.known	chr15	-	3025	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTGTATGTTGGCTT	NA	False	NA	-12	True	AATAAA	-12	NA	94487760	94475831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
transcript_47082.nic	chr15	-	2934	8	NIC	ENSMUSG00000022451.13	novel	3025	9	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	174.476242462043	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTGTATGTTGGCTT	NA	False	NA	-12	True	AATAAA	-12	NA	94487747	94475831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94487632
transcript_47086.nic	chr15	-	1237	8	ISM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	-10	2751	0	318	5prime_fragment	FALSE	canonical	3	499	junction_7	22.0565136845869	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACTGATTATCACTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	94487770	94478582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
transcript_47089.nic	chr15	-	682	6	ISM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	30	4799	30	1693	5prime_fragment	FALSE	canonical	3	499	junction_5	23.0772615359795	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGAGACGGTGCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	94487730	94480630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
transcript_47095.known	chr15	+	2717	8	FSM	ENSMUSG00000063296.6	ENSMUST00000080141.6	2717	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	14.5195153683108	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGTGTGATGTAGGTT	NA	False	NA	4	True	AATAAA	-17	NA	94527130	94993979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_94527184_94535941_94536245_94612742_94612876_94777261_94777362_94829676_94829775_94909196_94909357_94972284_94972415_94992239
transcript_47097.nnic	chr15	+	775	4	NNC	ENSMUSG00000063296.6	novel	2717	8	NA	NA	-137	20	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	46.5044800709208	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACCCCACAGCAACAG	NA	False	NA	NA	False	TTTAAA	-33	NA	94526975	94615050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_94527184_94535941_94536245_94612742_94612876_94614919
transcript_47101.nnic	chr15	-	3437	21	NNC	ENSMUSG00000022454.18	novel	3220	21	NA	NA	-58547	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	3.2542280190546	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCATGCGAGCCCGCGTCT	NA	False	NA	0	True	AATAAA	-22	NA	95484987	95117330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_95118036_95126964_95127190_95129177_95129355_95130364_95130559_95139417_95139559_95194039_95194136_95196738_95196862_95244642_95244769_95272608_95272738_95281506_95281610_95282945_95283038_95327758_95327862_95329419_95329549_95330475_95330559_95330731_95330805_95332942_95333040_95333137_95333312_95371389_95371541_95425157_95425287_95425681_95425768_95484686
transcript_47102.nnic	chr15	-	2866	21	NNC	ENSMUSG00000022454.18	novel	3220	21	NA	NA	-58547	-88	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	3.2542280190546	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGTGTGGCCAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	95484987	95117901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_95118036_95126964_95127190_95129177_95129355_95130364_95130559_95139417_95139559_95194039_95194136_95196738_95196862_95244642_95244769_95272608_95272738_95281506_95281610_95282945_95283038_95327758_95327862_95329419_95329549_95330475_95330559_95330731_95330805_95332942_95333040_95333137_95333312_95371389_95371541_95425157_95425287_95425681_95425768_95484686
transcript_47104.known	chr15	-	477	3	FSM	ENSMUSG00000045608.8	ENSMUST00000229611.2	477	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	14.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAAGGGACCTAGAGAC	NA	False	NA	NA	False	NA	NA	NA	95530709	95522618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_95522899_95530158_95530347_95530700
transcript_47107.known	chr15	+	3149	21	FSM	ENSMUSG00000064210.8	ENSMUST00000227791.2	3149	21	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	22.898635330517	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGCCCTGAGGTGTG	NA	False	NA	NA	False	GATAAA	-20	NA	95688772	95870840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_95688938_95728524_95728588_95762105_95762189_95792293_95792423_95810185_95810252_95811252_95811538_95811752_95811867_95813833_95813950_95818124_95818260_95825404_95825511_95829663_95829725_95839090_95839234_95841278_95841357_95846152_95846379_95847371_95847542_95847739_95847838_95853771_95853903_95859956_95860163_95863701_95863905_95865503_95865610_95870375
transcript_47111.known	chr15	+	4927	20	FSM	ENSMUSG00000064210.8	ENSMUST00000071874.8	4927	20	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_10	12.2043995518441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95688723	95872632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_95688938_95762105_95762189_95792293_95792423_95810185_95810252_95811252_95811538_95811752_95811867_95813833_95813950_95818124_95818260_95825404_95825511_95829663_95829725_95839090_95839234_95841278_95841357_95846152_95846379_95847371_95847542_95847739_95847838_95853771_95853903_95859956_95860163_95863701_95863905_95865503_95865610_95870375
transcript_47118.known	chr15	+	647	4	FSM	ENSMUSG00000064210.8	ENSMUST00000226932.2	647	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	30.6521704868604	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACAAGTGTAGGACCTC	NA	False	NA	NA	False	NA	NA	NA	95688890	95792747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_95688938_95728524_95728588_95762105_95762189_95792293
transcript_47122.known	chr15	+	8507	21	FSM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_13	16.8330032970947	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGGATAAGTGACTTC	NA	False	NA	18	True	AATAAA	-19	NA	96185453	96302873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_96185668_96185774_96185869_96186935_96187034_96247873_96248008_96254573_96254793_96256800_96256869_96259454_96259522_96259613_96259865_96260197_96260295_96260372_96260583_96261475_96261644_96264713_96264796_96266533_96266669_96267236_96267434_96267800_96270644_96276694_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
transcript_47128.nic	chr15	-	5126	15	NIC	ENSMUSG00000033228.9	novel	5766	15	NA	NA	-228	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	76.3346552480375	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGTAATGGGATGTGCGT	NA	False	NA	-3	True	AATAAA	-22	NA	96358952	96312452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_47129.known	chr15	-	5766	15	FSM	ENSMUSG00000033228.9	ENSMUST00000047835.8	5766	15	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_2	59.5770809240313	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTGTTAATTTGTTG	NA	False	NA	-20	True	NA	NA	NA	96358724	96311536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_96312798_96312912_96313033_96313657_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_4713.known	chr1	+	3123	8	FSM	ENSMUSG00000026457.15	ENSMUST00000027727.15	3123	8	0	0	0	0	multi-exon	FALSE	canonical	3	879	junction_4	75.4485904170407	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTTGGTTCCATTC	NA	False	NA	8	True	NA	NA	NA	134343115	134361089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134343324_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
transcript_47135.nic	chr15	-	3580	11	ISM	ENSMUSG00000033228.9	ENSMUST00000227069.2	4829	15	-139	3913	-120	2315	5prime_fragment	FALSE	canonical	3	241	junction_6	25.2824049488968	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAAAGATTCCCACTGGG	NA	False	NA	NA	False	AATAAA	-37	NA	96358844	96316365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_47136.nic	chr15	-	3463	11	ISM	ENSMUSG00000033228.9	ENSMUST00000227069.2	4829	15	-166	4057	-147	2171	5prime_fragment	FALSE	canonical	3	241	junction_6	25.2824049488968	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAATACAAGAAATGAAA	NA	False	NA	NA	False	NA	NA	NA	96358871	96316509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_47137.nic	chr15	-	2317	11	ISM	ENSMUSG00000033228.9	ENSMUST00000227069.2	4829	15	-145	5182	-126	1046	5prime_fragment	FALSE	canonical	3	241	junction_6	25.2824049488968	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGAAATAATTCCAGCAT	NA	False	NA	NA	False	NA	NA	NA	96358850	96317634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_47139.nic	chr15	-	1565	11	ISM	ENSMUSG00000033228.9	ENSMUST00000227069.2	4829	15	-160	5949	-141	279	5prime_fragment	FALSE	canonical	3	241	junction_6	25.2824049488968	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGGAGATCTGTACCTCC	NA	False	NA	NA	False	AAAAAG	-4	NA	96358865	96318401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_47144.nic	chr15	-	905	7	ISM	ENSMUSG00000033228.9	ENSMUST00000227069.2	4829	15	-180	10295	-161	-297	5prime_fragment	FALSE	canonical	3	241	junction_2	26.5183374709317	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGATGGAAAGAAAAATGCT	NA	False	NA	NA	False	NA	NA	NA	96358885	96322747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_47147.nic	chr15	-	856	6	ISM	ENSMUSG00000033228.9	ENSMUST00000227069.2	4829	15	-148	17208	-129	-7210	5prime_fragment	FALSE	canonical	3	241	junction_1	28.8832131176571	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTAACTCCGCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	96358853	96329660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_47148.nic	chr15	-	797	5	ISM	ENSMUSG00000033228.9	ENSMUST00000227069.2	4829	15	-161	17758	-142	-7760	5prime_fragment	FALSE	canonical	3	267	junction_1	19.2353840616713	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAGGTTAGTAATTAAAT	NA	False	NA	NA	False	NA	NA	NA	96358866	96330210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_47150.known	chr15	-	4829	15	FSM	ENSMUSG00000033228.9	ENSMUST00000227069.2	4829	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	76.3346552480375	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGTAATGGGATGTGCGT	NA	False	NA	-3	True	AATAAA	-22	NA	96358705	96312452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_96312798_96312912_96313031_96313657_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825_96341984_96344390_96344473_96358482
transcript_47161.known	chr15	-	6966	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGTCTCGTATGATT	NA	False	NA	-17	True	ATTAAA	-16	NA	96540131	96469298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
transcript_47162.known	chr15	-	7266	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088452.11	7266	16	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_15	89.8033901859439	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGTCTCGTATGATT	NA	False	NA	-17	True	ATTAAA	-16	NA	96540794	96469298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371
transcript_47187.known	chr15	-	3722	1	FSM	ENSMUSG00000023169.16	ENSMUST00000229253.2	3722	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATGAA	-4	NA	96540280	96536558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_96536600_96540300
transcript_47189.known	chr15	-	4660	16	FSM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_15	32.8196418153655	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGTAGGATTTTTTGT	NA	False	NA	-8	True	AATAAA	-16	NA	96597611	96585272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495_96596699_96597288
transcript_47194.nnic	chr15	-	4575	15	NIC	ENSMUSG00000022462.8	novel	4660	16	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_12	84.1414018792418	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGTAGGATTTTTTGT	NA	False	NA	-8	True	AATAAA	-16	NA	96597642	96585272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96596062_96596145_96596495_96596699_96597288
transcript_47198.nic	chr15	-	987	3	NIC	ENSMUSG00000022462.8	novel	4660	16	NA	NA	-31	-8169	intron_retention	FALSE	canonical	3	252	junction_2	29.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACTTGCGGTTCAAAGTA	NA	False	NA	NA	False	GATAAA	-39	NA	96597642	96595714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_96596145_96596495_96596699_96597288
transcript_4720.known	chr1	+	3446	8	FSM	ENSMUSG00000026457.15	ENSMUST00000112237.2	3446	8	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	322.905874956825	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTCTTGGTTCCA	NA	False	NA	5	True	NA	NA	NA	134343193	134361086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
transcript_47207.known	chr15	-	3932	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	1078	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGCTATGATCTTCTTT	NA	False	NA	-12	True	AATAAA	-16	NA	96953837	96892703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
transcript_47236.nnic	chr15	-	1059	5	NNC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-41	161	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	335.890607192282	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTAATTGCAATCCAGG	NA	False	NA	NA	False	NA	NA	NA	97065166	97058652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_97059277_97059835_97059964_97063982_97064057_97064383_97064508_97065057
transcript_47240.known	chr15	-	593	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229245.2	593	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	294.920328224421	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97065123	97054909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97055131_97059094_97059277_97064383_97064508_97065057
transcript_47241.known	chr15	-	510	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229999.2	510	4	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_3	214.206027511418	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTCCGCTTTCCTCCCG	NA	False	NA	NA	False	NA	NA	NA	97065124	97059069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97059277_97059835_97059964_97064383_97064492_97065057
transcript_47246.known	chr15	-	655	3	FSM	ENSMUSG00000116295.2	ENSMUST00000231024.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	244.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065125	97058813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97059277_97064383_97064508_97065057
transcript_47251.nnic	chr15	+	2296	2	NNC	ENSMUSG00000044250.9	novel	2185	6	NA	NA	15430	1	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTCCAAAAGTGGTTCT	NA	False	NA	15	True	AATAAA	-16	NA	97274527	97283562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_97275170_97281908
transcript_47252.known	chr15	-	2801	2	FSM	ENSMUSG00000048218.7	ENSMUST00000053106.7	2801	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACACGTGCTCTGTGAC	NA	False	NA	NA	False	TTTAAA	-12	NA	97145168	97142024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97144479_97144821
transcript_47255.known	chr15	-	2271	17	FSM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_16	35.978292066189	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGTCGATATTTCATTT	NA	False	NA	-3	True	AATAAA	-25	NA	97603706	97572977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
transcript_47263.nic	chr15	-	395	3	ISM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	-43	26007	-43	-20725	5prime_fragment	FALSE	canonical	3	236	junction_2	36	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTACGACTATGATGCCTG	NA	False	NA	NA	False	AATAAA	-2	NA	97603749	97598984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_97599093_97601082_97601251_97603630
transcript_47268.known	chr15	-	3750	28	FSM	ENSMUSG00000022469.18	ENSMUST00000129223.9	3750	28	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_8	10.6521248612827	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTGTTCTACCGCCTG	227	False	NA	-18	True	CATAAA	-13	NA	97665679	97642833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97643548_97644938_97645011_97645103_97645159_97646093_97646159_97646463_97646552_97647376_97647428_97647531_97647623_97647886_97648036_97648140_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059_97655143_97655230_97655391_97655563_97655643_97655897_97655987_97656271_97656385_97656722_97656870_97657042_97657120_97657205_97657267_97657845_97657931_97658459_97658629_97658988_97659111_97659355_97659463_97659559_97659614_97664642_97664856_97665275
transcript_47271.known	chr15	-	4005	28	FSM	ENSMUSG00000022469.18	ENSMUST00000126854.9	4005	28	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_8	8.12572672702261	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAAAAACCATA	179	False	NA	NA	False	NA	NA	NA	97665727	97642650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97643548_97644938_97645011_97645103_97645159_97646093_97646159_97646463_97646552_97647376_97647428_97647531_97647623_97647886_97648069_97648149_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059_97655143_97655230_97655391_97655563_97655643_97655897_97655987_97656271_97656385_97656722_97656870_97657042_97657120_97657205_97657267_97657845_97657931_97658459_97658629_97658988_97659111_97659355_97659463_97659559_97659614_97664642_97664856_97665275
transcript_47281.known	chr15	-	3395	27	FSM	ENSMUSG00000022469.18	ENSMUST00000177352.8	3395	27	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_8	8.251232649531	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGTTGCCTAGAGCGGT	963	False	NA	-81	True	GATAAA	-17	NA	97664943	97642896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97643548_97644938_97645011_97645103_97645159_97646093_97646159_97646463_97646552_97647376_97647428_97647531_97647623_97647886_97648069_97648149_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059_97655143_97655230_97655391_97655563_97655643_97655897_97655987_97656271_97656385_97656722_97656870_97657042_97657120_97657205_97657267_97657845_97657931_97658459_97658629_97658988_97659111_97659355_97659463_97659559_97659614_97664642
transcript_47283.nic	chr15	-	4073	25	NIC	ENSMUSG00000022475.20	novel	4113	25	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_20	5.27029806241228	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACAATATATGTTTTATT	2242	False	NA	-26	True	NA	NA	NA	97729396	97690570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705670_97705845_97706043_97706233_97706415_97706540_97706652_97706847_97706940_97707281_97707408_97707804_97707921_97708733_97708846_97709143_97709235_97709318_97709510_97729239
transcript_47287.known	chr15	-	4223	24	FSM	ENSMUSG00000022475.20	ENSMUST00000088402.12	4223	24	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_19	5.55841976156414	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTTATTTGCTTTAAA	1990	False	NA	-17	True	NA	NA	NA	97729648	97690561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705670_97705845_97706043_97706233_97706415_97706847_97706940_97707281_97707408_97707804_97707921_97708733_97708846_97709143_97709235_97709318_97709510_97729239
transcript_47291.known	chr15	+	2536	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_2	1	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTTTTTTTTCACT	NA	False	NA	17	True	AATAAA	-18	NA	97682235	97690573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_97682498_97687783_97687952_97688467
transcript_47297.known	chr15	-	3985	25	FSM	ENSMUSG00000022475.20	ENSMUST00000079838.14	3985	25	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	6.78181801256533	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCCTTGGGAGAACGCC	2263	False	NA	0	True	AATATA	-16	NA	97729375	97690544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705649_97705845_97706043_97706233_97706415_97706540_97706652_97706847_97706940_97707281_97707408_97707804_97707849_97708733_97708846_97709143_97709235_97709318_97709510_97729239
transcript_47301.known	chr15	+	1455	8	FSM	ENSMUSG00000052369.9	ENSMUST00000229428.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	28.3318527024094	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCACTGTCTCTGACTG	7680	False	NA	10	True	AATAAA	-16	NA	97862109	97868155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
transcript_47302.known	chr15	+	1623	8	FSM	ENSMUSG00000052369.9	ENSMUST00000064200.9	1623	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	38.9117263685331	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7681	False	NA	11	True	AATAAA	-17	NA	97862110	97868156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_97862385_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
transcript_47307.known	chr15	-	5104	54	FSM	ENSMUSG00000022483.18	ENSMUST00000023123.15	5104	54	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_47	3.47415827516495	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGACTTGTGTTTTGT	8055	False	NA	NA	False	ATTAAA	-31	NA	97902576	97873482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97874068_97874522_97874766_97875062_97875251_97875601_97875891_97876218_97876327_97876758_97876813_97877045_97877154_97877265_97877320_97877512_97877621_97877755_97877810_97878026_97878135_97878328_97878437_97878605_97878768_97879395_97879450_97879884_97879939_97880409_97880518_97880796_97880851_97881118_97881173_97881532_97881587_97881841_97881896_97882242_97882351_97882600_97882700_97882884_97882930_97883162_97883217_97883443_97883498_97883743_97883798_97884188_97884243_97884622_97884722_97885173_97885228_97885365_97885465_97885548_97885603_97885964_97886073_97886443_97886498_97886642_97886742_97886828_97886874_97887166_97887266_97888793_97888848_97889224_97889270_97891897_97891952_97892424_97892470_97892748_97892803_97892896_97892951_97893240_97893295_97893983_97894038_97894369_97894424_97894528_97894574_97895192_97895271_97896179_97896285_97896425_97896480_97896579_97896613_97896734_97896768_97897155_97897173_97898283_97898488_97902289
transcript_47312.known	chr15	+	2879	23	FSM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.5577830991277	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGTTTTGGGCGCTCTT	1596	False	NA	1	True	AATAAA	-13	NA	98006346	98030322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
transcript_47314.nnic	chr15	+	2848	23	NNC	ENSMUSG00000033065.15	novel	2879	23	NA	NA	86	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	22.3296119591885	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	1682	False	NA	7	True	AATAAA	-19	NA	98006432	98030328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_98006542_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
transcript_47326.nnic	chr15	+	2340	19	NNC	ENSMUSG00000033065.15	novel	2816	23	NA	NA	12568	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	22.6396898290492	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	7	True	AATAAA	-19	NA	98018914	98030328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_98018951_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
transcript_47328.known	chr15	-	3806	19	FSM	ENSMUSG00000033075.18	ENSMUST00000180657.2	3806	19	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_18	49.2407790452959	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTTGTTGTTTGTAGC	6461	False	NA	NA	False	TTTAAA	-5	NA	97991132	97939613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97990528
transcript_47329.nic	chr15	-	3958	19	NIC	ENSMUSG00000033075.18	novel	3806	19	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_10	47.9875562573836	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGCGGGCCCTTTCAC	6175	False	NA	-4	True	AATAAA	-13	NA	97991418	97939112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
transcript_47334.nic	chr15	-	3298	19	NIC	ENSMUSG00000033075.18	novel	3806	19	NA	NA	-32	-223	combination_of_known_junctions	FALSE	canonical	3	74	junction_10	47.9875562573836	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAATGTGTTTACCATT	6111	False	NA	NA	False	TTTAAA	-19	NA	97991482	97939836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
transcript_47336.known	chr15	-	3882	19	FSM	ENSMUSG00000033075.18	ENSMUST00000180716.8	3882	19	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_15	62.0252089332223	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTCTCCACTCCAGCAGCC	6143	False	NA	NA	False	AATGAA	-6	NA	97991450	97939273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97974792_97974924_97980123_97980209_97982850_97982982_97984966_97985015_97991163
transcript_47340.known	chr15	-	6575	18	FSM	ENSMUSG00000033075.18	ENSMUST00000044189.16	6575	18	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_17	35.6797559226372	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCTGGACTCAATACTAT	5968	False	NA	2	True	AATAAA	-36	NA	97991625	97936624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
transcript_47343.nic	chr15	-	3542	18	NIC	ENSMUSG00000033075.18	novel	3806	19	NA	NA	17	-223	combination_of_known_junctions	FALSE	canonical	3	73	junction_17	37.6096321314865	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAATGTGTTTACCATT	6424	False	NA	NA	False	TTTAAA	-19	NA	97991169	97939836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97990528
transcript_47369.known	chr15	-	853	2	FSM	ENSMUSG00000033075.18	ENSMUST00000182611.2	853	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTGATTAAGAAGAGATCA	6825	False	NA	NA	False	NA	NA	NA	97990768	97987071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97987685_97990528
transcript_47370.known	chr15	-	1270	2	FSM	ENSMUSG00000033075.18	ENSMUST00000180531.2	1270	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGATGAAAAAGGAGTTGG	6407	False	NA	NA	False	NA	NA	NA	97991186	97986437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_97987685_97991163
transcript_47371.known	chr15	-	1049	4	FSM	ENSMUSG00000048175.14	ENSMUST00000059112.12	1049	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	39.6848697728604	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGTGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	98043540	98033594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98034320_98039164_98039270_98040531_98040692_98043481
transcript_47374.known	chr15	-	1100	4	FSM	ENSMUSG00000048175.14	ENSMUST00000123626.8	1100	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	16.7531091641721	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGTGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	98043587	98033594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98034320_98039164_98039270_98040531_98040696_98043481
transcript_47381.nnic	chr15	-	2613	11	NNC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	1	41	junction_3	398.463749919613	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	False	NA	-22	True	ATTAAA	-13	NA	98432198	98416701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_98417429_98418198_98418307_98419516_98419644_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
transcript_47384.nnic	chr15	-	2511	11	NNC	ENSMUSG00000022992.18	novel	2324	10	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	1	34	junction_3	399.718463421444	104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	False	NA	-22	True	ATTAAA	-13	NA	98432198	98416701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_98417429_98418198_98418307_98419516_98419644_98422441_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
transcript_4741.nnic	chr1	+	3382	12	Fusion	ENSMUSG00000026455.15_ENSMUSG00000101061.2	novel	937	3	NA	NA	-11	0	multi-exon	TRUE	canonical	3	12	junction_1	47.209573199224	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134363354	134418611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr1_+_134363609_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
transcript_47412.known	chr15	-	3596	10	FSM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	0	0	0	0	multi-exon	FALSE	canonical	1	385	junction_5	229.121025758101	2004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGGACGGAATCATGTT	NA	False	NA	NA	False	NA	NA	NA	98432145	98415538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
transcript_47413.nic	chr15	-	2165	10	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-71	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	343.824388135198	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	False	NA	-22	True	ATTAAA	-13	NA	98432216	98416701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
transcript_47419.known	chr15	-	2311	10	FSM	ENSMUSG00000022992.18	ENSMUST00000023727.17	2311	10	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_5	382.650535212961	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	False	NA	-22	True	ATTAAA	-13	NA	98432125	98416701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98417429_98418198_98418307_98422441_98422594_98424455_98424553_98426743_98426907_98427166_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
transcript_4742.known	chr1	+	3277	12	FSM	ENSMUSG00000026455.15	ENSMUST00000116528.2	3277	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	38.3780670833987	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134383292	134418611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134383404_134386165_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
transcript_4743.known	chr1	+	3220	12	FSM	ENSMUSG00000026455.15	ENSMUST00000112232.8	3220	12	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	55.1444384404184	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134383268	134418611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134383404_134386165_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416753_134416860_134417069
transcript_47436.nic	chr15	-	2371	9	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	1	91	junction_6	351.279247003008	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAGTGTAAAGTGATCT	NA	False	NA	-22	True	ATTAAA	-13	NA	98432198	98416701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429600_98429780_98431398_98431658_98431782
transcript_47437.known	chr15	-	1980	9	FSM	ENSMUSG00000022992.18	ENSMUST00000231066.2	1980	9	0	0	0	0	multi-exon	FALSE	canonical	1	77	junction_8	414.912038870891	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	-21	True	ATTAAA	-14	NA	98432145	98416700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429600_98429780_98431398_98431658_98432121
transcript_4744.known	chr1	+	3408	12	FSM	ENSMUSG00000026455.15	ENSMUST00000027725.11	3408	12	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	24.9889231659096	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGTTGGATTTATTGT	NA	False	NA	NA	False	NA	NA	NA	134383268	134418756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134383404_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
transcript_47461.known	chr15	-	2175	9	FSM	ENSMUSG00000011960.13	ENSMUST00000012104.7	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	11.1439445440113	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98465517	98441091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
transcript_47467.known	chr15	-	2011	8	FSM	ENSMUSG00000011960.13	ENSMUST00000168928.8	2011	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	14.8681278071516	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98465517	98441091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98442490_98444404_98444476_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
transcript_4747.nic	chr1	+	3214	12	NIC	ENSMUSG00000026455.15	novel	3220	12	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_10	48.4638401455445	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134383236	134418611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_134383404_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416753_134416860_134417069
transcript_47473.known	chr15	+	2513	13	FSM	ENSMUSG00000003352.15	ENSMUST00000109150.9	2513	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	9.06879570591132	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTGTCTCTGGTCTG	NA	False	NA	5	True	AATAAA	-16	NA	98530256	98542410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98530402_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539057_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
transcript_47475.known	chr15	+	2477	13	FSM	ENSMUSG00000003352.15	ENSMUST00000230490.2	2477	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	9.50548087508816	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTGTCTCTGGTCTG	382	False	NA	5	True	AATAAA	-16	NA	98532985	98542410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98533095_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539057_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
transcript_47491.known	chr15	-	3187	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCAGCCCCGAGCTCC	6999	False	NA	-14	True	AATAAA	-15	NA	98560770	98543014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
transcript_47503.known	chr15	-	3093	11	FSM	ENSMUSG00000003360.16	ENSMUST00000160506.8	3093	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.71751694356912	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGTGCACG	7004	False	NA	NA	False	NA	NA	NA	98560765	98545871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
transcript_47516.nic	chr15	-	754	6	ISM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	-107	6820	-102	265	5prime_fragment	FALSE	canonical	3	21	junction_1	5.40370243444252	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAACAGTTCCAGGACCTG	6892	False	NA	NA	False	AAGAAA	-2	NA	98560877	98549834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
transcript_47518.known	chr15	-	610	2	FSM	ENSMUSG00000003360.16	ENSMUST00000159170.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCCTCAGTGATAAAG	6999	False	NA	NA	False	NA	NA	NA	98560770	98555773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98556317_98560703
transcript_47520.known	chr15	-	889	1	FSM	ENSMUSG00000003360.16	ENSMUST00000228973.2	889	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATTAAAAAAAAAAAACAA	6994	False	NA	NA	False	NA	NA	NA	98560775	98559886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98559900_98560800
transcript_47521.known	chr15	-	2203	5	FSM	ENSMUSG00000054855.14	ENSMUST00000003451.11	2203	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	4.54835134966506	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGGAGCAGCGCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	98575342	98567085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98568724_98570391_98570527_98571726_98571837_98574367_98574456_98575110
transcript_47522.known	chr15	-	856	4	FSM	ENSMUSG00000054855.14	ENSMUST00000120997.2	856	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	4.92160768674447	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGGTGTAGTTTGTAAT	NA	False	NA	NA	False	NA	NA	NA	98575339	98570097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98570527_98571726_98571837_98574367_98574456_98575110
transcript_47524.known	chr15	-	734	6	FSM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_4	33.5177564881661	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTTGTATTTTTCACT	NA	False	NA	NA	False	AATAAA	-15	NA	98626079	98622250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625563_98625630_98625837
transcript_47530.known	chr15	-	2411	1	FSM	ENSMUSG00000003355.8	ENSMUST00000229562.2	2411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAACAAAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	98626021	98623610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98623600_98626000
transcript_47534.nnic	chr15	-	3552	6	NNC	ENSMUSG00000051853.11	novel	4566	5	NA	NA	-19	-992	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	257.430689701131	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGCGCAGCCCTTTGT	1777	False	NA	-11	True	ATTAAA	-14	NA	98661114	98635506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_98636399_98636442_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
transcript_47538.known	chr15	-	4566	5	FSM	ENSMUSG00000051853.11	ENSMUST00000053183.12	4566	5	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_3	18.4712614620659	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTTTCCTTTTCCTCCA	1799	False	NA	NA	False	NA	NA	NA	98661092	98634514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
transcript_47547.nic	chr15	-	2113	12	NIC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	100.554249163292	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9431	False	NA	-4	True	ATTAAA	-22	NA	98729320	98710677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98728767
transcript_47549.known	chr15	-	1652	12	FSM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_11	39.9075377622816	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9349	False	NA	-4	True	ATTAAA	-22	NA	98729402	98710677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
transcript_47555.nnic	chr15	+	2272	4	NNC	ENSMUSG00000097414.3	novel	2224	3	NA	NA	-10	-19	intron_retention	FALSE	non_canonical	0	0	junction_2	10.3708994574027	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTTTGTTTTGTTCTTA	NA	False	NA	NA	False	NA	NA	NA	98704894	98713939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_98705106_98711122_98711409_98712086_98712744_98712821
transcript_47563.known	chr15	-	19823	55	FSM	ENSMUSG00000048154.18	ENSMUST00000023741.16	19823	55	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_32	56.9108994842793	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGCCTCTGTCCCATGA	9471	False	NA	NA	False	NA	NA	NA	98769085	98729552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98732474_98732596_98732706_98732788_98732863_98733062_98733349_98734955_98735087_98735175_98735313_98737157_98738299_98738441_98738570_98738642_98738776_98739290_98739422_98739619_98739796_98739908_98739985_98740623_98740784_98740939_98741108_98741232_98741374_98741475_98744428_98744523_98744757_98744854_98744922_98745018_98745104_98745238_98745363_98747100_98749083_98749275_98749413_98749487_98749671_98749771_98751587_98751670_98751722_98751913_98751988_98752063_98752306_98752411_98752497_98752594_98752733_98752905_98753017_98753190_98753257_98753415_98753567_98753648_98753780_98753958_98754064_98754150_98754271_98754487_98754710_98755268_98755317_98755405_98755516_98755602_98755768_98755922_98756105_98757390_98757496_98758514_98758626_98758931_98759046_98759482_98760565_98760656_98762091_98762226_98762373_98762529_98762688_98762814_98762930_98763008_98763175_98763381_98763545_98763669_98763780_98763876_98764101_98764256_98764384_98764552_98764639_98768894
transcript_47564.known	chr15	-	861	8	FSM	ENSMUSG00000023755.11	ENSMUST00000230623.2	861	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	83.0932596298783	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGTAGCCTGGATGTT	NA	False	NA	NA	False	NA	NA	NA	98778782	98775926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777645_98777726_98778388_98778461_98778595
transcript_47565.known	chr15	-	1069	8	FSM	ENSMUSG00000023755.11	ENSMUST00000229348.2	1069	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	69.0784824290016	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779157	98775658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777645_98777726_98778388_98778461_98779030
transcript_4757.known	chr1	+	2861	2	FSM	ENSMUSG00000042229.10	ENSMUST00000047978.9	2861	2	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_1	0	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTGGCGAGATGGCTCA	6638	False	NA	NA	False	ATTAAA	-13	NA	134422385	134436512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134422548_134433813
transcript_47574.known	chr15	-	2304	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGTCCCTGTGTCTAT	NA	False	NA	-3	True	AATAAA	-35	NA	98816112	98801797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
transcript_47583.nic	chr15	-	2155	13	ISM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	133	2724	-43	-423	5prime_fragment	FALSE	canonical	3	43	junction_5	11.8872013340212	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-2	NA	98815979	98804521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
transcript_47587.known	chr15	-	380	3	FSM	ENSMUSG00000022999.16	ENSMUST00000128818.2	380	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAGAAGAGAAGGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	98815936	98811382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98811472_98813017_98813103_98815730
transcript_47591.known	chr15	-	1743	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	0	0	0	0	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	7452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	31	False	NA	NA	False	AGTAAA	-18	NA	98832446	98829305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
transcript_47594.known	chr15	-	1803	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	0	0	0	0	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	2792	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	-4	True	AATAAA	-19	NA	98851584	98847717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
transcript_47598.known	chr15	+	1982	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	1640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCATCTGGTTCATA	NA	False	NA	15	True	AATAAA	-22	NA	98927771	98935991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
transcript_47599.known	chr15	+	781	3	FSM	ENSMUSG00000043091.10	ENSMUST00000230447.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_1	2383.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACAAAAAGTTTCAGAGC	NA	False	NA	NA	False	NA	NA	NA	98928201	98932783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98928306_98931974_98932198_98932329
transcript_47605.known	chr15	+	1757	9	FSM	ENSMUSG00000023484.15	ENSMUST00000024249.5	1757	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	6.35290287978653	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTACTGTGTTGGTCTG	-1	True	NA	6	True	AATAAA	-18	NA	98953061	98956854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98953645_98953984_98954046_98954221_98954318_98954649_98954818_98954913_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956482
transcript_47606.known	chr15	+	1863	8	FSM	ENSMUSG00000023484.15	ENSMUST00000047104.15	1863	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	6.60859057498307	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTGTTGGTCTGAGGT	-7	True	NA	10	True	AATAAA	-22	NA	98953055	98956858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98953645_98953984_98954046_98954221_98954318_98954649_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956482
transcript_47609.known	chr15	+	2255	14	FSM	ENSMUSG00000032783.10	ENSMUST00000039665.8	2255	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	8.88852727732572	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATGGGGCAGCCAGTG	NA	False	NA	8	True	AATAAA	-17	NA	98972858	98981284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
transcript_4761.known	chr1	+	5413	26	FSM	ENSMUSG00000042207.18	ENSMUST00000112198.3	5413	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	193.648853340266	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAACAACTA	6736	False	NA	-20	True	NA	NA	NA	134487929	134559260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134488281_134512891_134512970_134515659_134515783_134516514_134516686_134521066_134521202_134523537_134523635_134525320_134525431_134526797_134526957_134528371_134528492_134530187_134530347_134532179_134532362_134533450_134533614_134535425_134535546_134536602_134536798_134540925_134541108_134541624_134541750_134543655_134543807_134543926_134544042_134545429_134545786_134547297_134547437_134548580_134548761_134549672_134549832_134552448_134552935_134555002_134555115_134556335_134556491_134558170
transcript_47614.known	chr15	+	2639	14	FSM	ENSMUSG00000032783.10	ENSMUST00000230054.2	2639	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	17.6655315775427	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	14	True	AATAAA	-23	NA	98972455	98981290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98972949_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
transcript_47617.nic	chr15	+	2468	13	NIC	ENSMUSG00000032783.10	novel	2255	14	NA	NA	-4	0	intron_retention	FALSE	canonical	3	68	junction_1	8.33166649996666	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	14	True	AATAAA	-23	NA	98972854	98981290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980984_98981108
transcript_4762.known	chr1	+	2740	12	FSM	ENSMUSG00000042207.18	ENSMUST00000112197.3	2740	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	370.269010985078	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAGTGAC	6751	False	NA	NA	False	NA	NA	NA	134487944	134534529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_134488281_134512891_134512970_134515659_134515783_134516514_134516686_134521075_134521202_134523537_134523635_134525320_134525431_134526797_134526957_134528371_134528492_134530187_134530347_134532179_134532362_134533450
transcript_47623.nic	chr15	+	2608	12	ISM	ENSMUSG00000032783.10	ENSMUST00000039665.8	2255	14	-19	-6	-19	0	intron_retention	FALSE	canonical	3	68	junction_1	8.70071717382211	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	14	True	AATAAA	-23	NA	98972839	98981290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006
transcript_47631.known	chr15	+	714	3	FSM	ENSMUSG00000032783.10	ENSMUST00000230868.2	714	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	11	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGACATCTT	NA	False	NA	NA	False	NA	NA	NA	98972867	98973947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98972974_98973230_98973380_98973488
transcript_47632.known	chr15	+	451	2	FSM	ENSMUSG00000032783.10	ENSMUST00000229224.2	451	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGGCAGCCAGTGCTGT	NA	False	NA	12	True	AATAAA	-21	NA	98980712	98981288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98980984_98981108
transcript_47633.known	chr15	-	1474	2	FSM	ENSMUSG00000001076.8	ENSMUST00000064462.5	1474	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGCCTACCTTGG	6909	False	NA	NA	False	AATAAA	-17	NA	98985698	98981966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_98982815_98985072
transcript_47635.nnic	chr15	+	1559	3	NNC	ENSMUSG00000038009.8	novel	1564	3	NA	NA	-111	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	18.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	3912	False	NA	3	True	AATAAA	-21	NA	98997181	99002618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_98997366_98998703_98999657_99002196
transcript_47636.known	chr15	+	1564	3	FSM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	3.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	4023	False	NA	3	True	AATAAA	-21	NA	98997292	99002618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_98997482_98998703_98999657_99002196
transcript_47640.nic	chr15	+	2955	13	NIC	ENSMUSG00000051934.6	novel	1275	8	NA	NA	45	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	101.953795362845	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTAGCGCCGTCTCTCT	NA	False	NA	18	True	AATAAA	-23	NA	99023846	99111096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_99024038_99047514_99047812_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
transcript_47642.known	chr15	+	3096	13	FSM	ENSMUSG00000051934.6	ENSMUST00000063517.6	3096	13	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	25.9147909289056	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTAGCGCCGTCTCTCT	NA	False	NA	18	True	AATAAA	-23	NA	99024436	99111096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99024769_99047514_99047812_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
transcript_47645.nic	chr15	+	2872	12	NIC	ENSMUSG00000051934.6	novel	3096	13	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	100.076582246046	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTAGCGCCGTCTCTCT	NA	False	NA	18	True	AATAAA	-23	NA	99024363	99111096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_99024769_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
transcript_47653.known	chr15	+	3698	15	FSM	ENSMUSG00000037579.8	ENSMUST00000041415.5	3698	15	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	5.04520382468866	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGGAACTCAGTACTTT	NA	False	NA	7	True	AATAAA	-8	NA	99122741	99140698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99122933_99124188_99124423_99124861_99124997_99125789_99125924_99126353_99126598_99126939_99127098_99127186_99127395_99130573_99130886_99131129_99131330_99131747_99131998_99135955_99136174_99137475_99137808_99138767_99138875_99139630_99139708_99139800
transcript_47658.nic	chr15	-	2050	15	NIC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_14	227.949611779016	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTTTATTTTTTTTT	NA	False	NA	0	True	AATAAA	-20	NA	99149837	99140698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149602
transcript_47659.known	chr15	-	1916	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_2	85.1129201923742	1185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	1	True	AATAAA	-21	NA	99149842	99140697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
transcript_47664.known	chr15	-	1771	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_13	210.299476515005	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGTAGCTTCTTTTAT	NA	False	NA	-8	True	AATAAA	-12	NA	99149826	99140706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
transcript_4767.known	chr1	-	828	3	FSM	ENSMUSG00000073557.13	ENSMUST00000112163.2	828	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGGCTTCATGACACC	NA	False	NA	NA	False	NA	NA	NA	134883680	134875680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_134876016_134876733_134876776_134883229
transcript_4768.known	chr1	-	3213	20	FSM	ENSMUSG00000073557.13	ENSMUST00000132025.2	3213	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	2.03433137790397	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATTTGAGGCTGTTTA	NA	False	NA	NA	False	AATAAA	-11	NA	134883666	134761803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_134762215_134763522_134763636_134763715_134763906_134765590_134765780_134770380_134770472_134793515_134793699_134797805_134797989_134800005_134800049_134800544_134800671_134801676_134801760_134803702_134803904_134807370_134807484_134814160_134814301_134815012_134815093_134818493_134818569_134819895_134820041_134821087_134821248_134824080_134824200_134830115_134830247_134883229
transcript_47696.known	chr15	+	1428	1	FSM	ENSMUSG00000100599.3	ENSMUST00000190683.2	1428	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	99149718	99151146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99149700_99151100
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transcript_47842.known	chr15	+	944	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159209.8	944	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	555.512064964378	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCACCCCCCCACCCCTG	NA	False	NA	-68	True	NA	NA	NA	99291099	99306416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99291265_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_47851.known	chr15	+	577	8	FSM	ENSMUSG00000023010.16	ENSMUST00000229392.2	577	8	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	638.084601901404	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGTGACCAACTGGCCG	NA	False	NA	NA	False	AAGAAA	-4	NA	99290884	99306370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99290922_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_47858.known	chr15	-	4853	13	FSM	ENSMUSG00000023009.15	ENSMUST00000023747.14	4853	13	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_6	8.3877390676312	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTGTGTGGCAGCCCCC	NA	False	NA	-1	True	AATAAA	-25	NA	99355629	99319915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99320790_99321016_99321160_99321246_99321556_99321833_99321916_99321998_99322159_99323433_99326049_99327234_99327349_99330585_99330706_99331325_99331365_99331450_99331520_99331920_99332071_99333907_99333969_99355512
transcript_47859.known	chr15	-	1276	2	FSM	ENSMUSG00000037525.6	ENSMUST00000040313.6	1276	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGTCGTTTCTTTGCT	NA	False	NA	0	True	ATTAAA	-19	NA	99372611	99367959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99368961_99372336
transcript_47860.known	chr15	-	4628	1	FSM	ENSMUSG00000037525.6	ENSMUST00000229827.2	4628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGCTGTGTCGTTTCTTTG	NA	False	NA	-2	True	ATTAAA	-17	NA	99372589	99367961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99368000_99372600
transcript_47864.known	chr15	-	3052	18	FSM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_16	174.822975218819	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549524	99518376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
transcript_47865.nic	chr15	-	3042	18	NIC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_16	197.839524637143	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549543	99518376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541302_99541405_99549387
transcript_4787.known	chr1	+	1713	7	FSM	ENSMUSG00000026426.11	ENSMUST00000027684.11	1713	7	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	43.3720980457354	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	False	NA	15	True	AATAAA	-19	NA	135074561	135084007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_135074839_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
transcript_47871.known	chr15	-	2933	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGTTGGTTTTCTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	99549537	99518377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
transcript_4789.known	chr1	+	1495	7	FSM	ENSMUSG00000026426.11	ENSMUST00000125774.2	1495	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	183.490235889179	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	False	NA	15	True	AATAAA	-19	NA	135075406	135084007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_135075466_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
transcript_47892.known	chr15	-	834	8	FSM	ENSMUSG00000023015.15	ENSMUST00000169810.8	834	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	226.270923037506	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGAAGCTGTGTCTACT	NA	False	NA	NA	False	NA	NA	NA	99549533	99530023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540849_99549387
transcript_47894.known	chr15	-	550	6	FSM	ENSMUSG00000023015.15	ENSMUST00000165730.8	550	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	332.315873830908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGATTCTTCTTTGGTGAA	NA	False	NA	NA	False	NA	NA	NA	99549450	99532173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99532177_99534012_99534083_99535518_99535656_99537494_99537687_99540763_99540849_99549387
transcript_47895.known	chr15	-	374	4	FSM	ENSMUSG00000023015.15	ENSMUST00000109581.3	374	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	266.131546420187	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTTCGAGGACTTCCGA	NA	False	NA	NA	False	NA	NA	NA	99549524	99537679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99537701_99540763_99540849_99541273_99541405_99549387
transcript_47897.known	chr15	+	4114	12	FSM	ENSMUSG00000023017.11	ENSMUST00000023758.9	4114	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	2.84299923111125	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTCAGTGTTGGTTTTC	NA	False	NA	2	True	AATAAA	-15	NA	99568248	99599009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99568776_99569664_99570043_99570748_99570945_99592574_99592726_99593353_99593482_99594392_99594544_99594852_99594910_99595319_99595474_99595927_99596020_99596510_99596591_99596675_99596781_99596914
transcript_4790.known	chr1	-	2269	2	FSM	ENSMUSG00000026424.9	ENSMUST00000027682.9	2269	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTTGCCAATGGATGAT	9937	False	NA	18	True	AATAAA	-30	NA	135095419	135087971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135089434_135094612
transcript_47902.known	chr15	+	3307	13	FSM	ENSMUSG00000023018.6	ENSMUST00000023759.6	3307	13	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_12	25.0281785638153	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTGCTGTCTGGAGGG	7541	False	NA	26	True	AATAAA	-17	NA	99600009	99611872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99600380_99600986_99601175_99601471_99601515_99601618_99601742_99602211_99602335_99603507_99603625_99605191_99605294_99605520_99605683_99605765_99605864_99607161_99607298_99608973_99609097_99610039_99610142_99610252
transcript_47904.nic	chr15	+	3043	13	NIC	ENSMUSG00000023018.6	novel	810	7	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	80.2905747201307	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTGCTGTCTGGAGGG	7993	False	NA	26	True	AATAAA	-17	NA	99600461	99611872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_99600568_99600986_99601175_99601471_99601515_99601618_99601742_99602211_99602335_99603507_99603625_99605191_99605294_99605520_99605683_99605765_99605864_99607161_99607298_99608973_99609097_99610039_99610142_99610252
transcript_47906.known	chr15	+	1842	12	FSM	ENSMUSG00000023018.6	ENSMUST00000229236.2	1842	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	85.3464500077514	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTATCCCTGTCTGAGC	7703	False	NA	NA	False	NA	NA	NA	99600171	99610692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99600380_99600986_99601175_99601471_99601515_99601618_99601742_99603507_99603625_99605191_99605294_99605520_99605683_99605765_99605864_99607161_99607298_99608973_99609097_99610039_99610142_99610252
transcript_47911.nic	chr15	+	596	2	ISM	ENSMUSG00000023018.6	ENSMUST00000229236.2	1842	12	-200	9518	-38	-507	5prime_fragment	FALSE	canonical	3	287	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGATGACCCCTGGGGGT	7503	False	NA	10	True	NA	NA	NA	99599971	99601174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_99600380_99600986
transcript_47913.known	chr15	+	2861	8	FSM	ENSMUSG00000023019.13	ENSMUST00000023760.13	2861	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.1780301787479	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGGAAGAGTTGGGGGA	NA	False	NA	NA	False	AATAAA	-16	NA	99615395	99622886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99615530_99616032_99616211_99617014_99617156_99617976_99618116_99618446_99618560_99619815_99620050_99620336_99620444_99621071
transcript_47915.known	chr15	+	2090	2	FSM	ENSMUSG00000023020.4	ENSMUST00000023761.4	2090	2	0	0	0	0	multi-exon	FALSE	canonical	3	1440	junction_1	0	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTGATGTATGAGTCT	NA	False	NA	NA	False	AATAAA	-24	NA	99623527	99627413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99623730_99625525
transcript_47927.known	chr15	-	2775	11	FSM	ENSMUSG00000023021.16	ENSMUST00000109035.11	2775	11	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	103.150569557322	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTTAGTTAATGGTGT	NA	False	NA	NA	False	NA	NA	NA	99670343	99632761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99634318_99635427_99635535_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
transcript_47929.known	chr15	-	4243	11	FSM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_4	128.449367456597	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	7238	False	NA	-3	True	AATAAA	-15	NA	99773337	99676350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99773213
transcript_47943.known	chr15	-	2096	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670482	99633472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
transcript_4795.known	chr1	-	2288	11	FSM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	16.9602476397015	914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGGAGTTATAGAATG	NA	False	NA	-14	True	AATAAA	-22	NA	135211822	135190449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
transcript_47973.known	chr15	-	2680	2	FSM	ENSMUSG00000023022.15	ENSMUST00000171450.2	2680	2	0	0	0	0	multi-exon	FALSE	canonical	3	1109	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAACAAAAAAAAAA	7278	False	NA	NA	False	NA	NA	NA	99773297	99739108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99741705_99773213
transcript_47975.known	chr15	-	294	1	FSM	ENSMUSG00000092014.2	ENSMUST00000170206.2	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCAGTCATAAA	NA	False	NA	NA	False	NA	NA	NA	99708463	99708169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99708200_99708500
transcript_47976.known	chr15	+	666	2	FSM	ENSMUSG00000096111.8	ENSMUST00000177831.2	666	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATATAAATAAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	99832693	99850925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99832800_99850365
transcript_47977.known	chr15	+	6530	16	FSM	ENSMUSG00000023025.17	ENSMUST00000100206.4	6530	16	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	85.9835643209406	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTTTCTTTTTTCCA	NA	False	NA	NA	False	AATAAA	-15	NA	99870660	99914239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99870865_99882800_99882937_99883918_99884075_99885283_99885360_99888173_99888311_99889605_99889710_99891203_99891315_99892544_99892599_99894347_99894558_99895253_99895358_99898716_99898930_99899682_99899732_99903121_99903284_99905487_99905610_99908172_99908342_99909716
transcript_4798.known	chr1	-	2171	10	FSM	ENSMUSG00000041926.16	ENSMUST00000074357.8	2171	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	75.0946727574148	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGGAGTTATAGAATG	NA	False	NA	-14	True	AATAAA	-22	NA	135211822	135190449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135205126_135205276_135206504_135206646_135211299
transcript_47981.known	chr15	-	1130	1	FSM	ENSMUSG00000100084.3	ENSMUST00000188271.3	1130	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTTTACTAGAGTTAT	4286	False	NA	NA	False	AATAAA	-19	NA	99871168	99870038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_99870000_99871200
transcript_47984.nic	chr15	+	370	3	ISM	ENSMUSG00000023026.17	ENSMUST00000100203.10	8914	38	-21	87541	-21	-36232	5prime_fragment	FALSE	canonical	3	48	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAACTCCTGCTCCCACGG	4836	False	NA	NA	False	AAAAAG	-8	NA	99936523	100029813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_99936791_100013725_100013798_100029782
transcript_47986.known	chr15	+	8914	38	FSM	ENSMUSG00000023026.17	ENSMUST00000100203.10	8914	38	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	10.5011043281662	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTTTAATTCTTAAAC	4857	False	NA	9	True	AATAAA	-13	NA	99936544	100117354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_99936791_100013725_100013798_100029782_100029909_100039902_100040029_100049031_100049245_100052037_100052188_100052914_100053038_100055050_100055249_100055757_100055850_100058322_100058434_100059858_100059983_100060559_100060670_100065736_100065840_100067147_100067213_100069000_100069095_100069483_100069604_100071097_100071213_100072307_100072448_100073081_100073219_100076322_100076404_100079189_100079318_100080887_100081003_100084021_100084224_100087912_100088023_100088136_100088218_100088867_100088992_100091720_100091843_100093671_100093784_100096821_100096932_100097340_100097472_100100068_100100238_100101012_100101184_100102963_100103026_100104277_100104336_100105638_100105714_100107459_100107638_100109864_100109989_100113058
transcript_47988.nnic	chr15	+	2333	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	110.684143362257	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTAAGTTTTCGGAATGC	NA	False	NA	10	True	ATTAAA	-13	NA	100125684	100159122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158165_100158208
transcript_47989.nnic	chr15	+	2351	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-25	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	110.684143362257	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	17	True	ATTAAA	-20	NA	100125674	100159129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158179_100158221
transcript_47991.known	chr15	+	2365	7	FSM	ENSMUSG00000023027.14	ENSMUST00000023769.11	2365	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	32.1334024895521	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTTTCGGAATGCAAA	NA	False	NA	13	True	ATTAAA	-16	NA	100125699	100159125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
transcript_47998.known	chr15	+	1946	2	FSM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTGCATTTGTGTC	538	False	NA	12	True	AATAAA	-28	NA	100202641	100212236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100203226_100210874
transcript_47999.known	chr15	+	1800	2	FSM	ENSMUSG00000056487.9	ENSMUST00000088142.6	1800	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTGGCTGCATTTGTG	4849	False	NA	NA	False	GATAAA	-16	NA	100251080	100259721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100251589_100258429
transcript_48.known	ERCC-00144	+	521	1	FSM	ERCC-00144A	DQ854995	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00144_+_0_500
transcript_480.known	chr1	-	4897	23	FSM	ENSMUSG00000005886.15	ENSMUST00000006037.13	4897	23	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	7.80826538127789	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCCGACTTCATCCCCAT	NA	False	NA	NA	False	NA	NA	NA	13444307	13212698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_13212997_13217098_13217189_13218540_13218740_13219154_13219333_13220913_13221143_13222602_13222681_13223020_13223300_13226593_13226760_13230384_13230515_13232296_13232513_13235119_13235327_13237119_13237331_13244302_13245573_13247297_13247446_13250704_13250849_13251439_13251542_13254398_13254588_13256956_13257135_13260310_13260415_13291530_13291704_13294832_13294938_13356192_13356250_13444161
transcript_48001.nnic	chr15	-	2908	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	53.8380244062904	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100320944	100285778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_100286319_100286443_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_48002.nnic	chr15	-	2887	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.8380244062904	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100320944	100285778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_100286362_100286507_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_48003.known	chr15	-	3025	17	FSM	ENSMUSG00000023030.17	ENSMUST00000023774.12	3025	17	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_1	39.2515923243886	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100320936	100285778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_48006.known	chr15	-	4415	16	FSM	ENSMUSG00000023030.17	ENSMUST00000138843.8	4415	16	0	0	0	0	multi-exon	FALSE	canonical	1	68	junction_8	31.7016648704063	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGGACACACTTTAAGT	NA	False	NA	80	True	AATAAA	-19	NA	100320883	100290443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_48015.known	chr15	+	1222	9	FSM	ENSMUSG00000037353.10	ENSMUST00000229648.2	1222	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	16.3587705833904	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTTTATTGTGATGTA	2419	False	NA	NA	False	NA	NA	NA	100366987	100375956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100367020_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_48017.known	chr15	+	2502	9	FSM	ENSMUSG00000037353.10	ENSMUST00000037001.10	2502	9	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.1761116600664	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	2335	False	NA	27	True	AGTAAA	-16	NA	100366903	100377045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100367127_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_48018.known	chr15	+	2266	8	FSM	ENSMUSG00000037353.10	ENSMUST00000230294.2	2266	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	31.1808418417333	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTGGGAATTACTTAT	2347	False	NA	26	True	AGTAAA	-15	NA	100366915	100377044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100367020_100367565_100367718_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_48024.known	chr15	+	2153	6	FSM	ENSMUSG00000037353.10	ENSMUST00000231001.2	2153	6	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	5.31413210223457	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	5719	False	NA	27	True	AGTAAA	-16	NA	100370287	100377045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_48026.known	chr15	-	4375	5	FSM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	9.28372231381357	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTGGGTTCTTTATCTT	9970	False	NA	2	True	ATTAAA	-17	NA	100393369	100377450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100380582_100382330_100382628_100385825_100386086_100387315_100387548_100392914
transcript_48029.known	chr15	-	3220	16	FSM	ENSMUSG00000009733.10	ENSMUST00000009877.8	3220	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	31.3527599352203	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGGTTCTTGTTGCTG	NA	False	NA	1	True	AATAAA	-22	NA	100449862	100400676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411047_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
transcript_48030.nnic	chr15	-	3278	16	NNC	ENSMUSG00000009733.10	novel	3302	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_15	29.783664426438	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGGTTCTTGTTGCTG	NA	False	NA	1	True	AATAAA	-22	NA	100449889	100400676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449388_100449790
transcript_48033.nic	chr15	-	3642	15	ISM	ENSMUSG00000009733.10	ENSMUST00000229696.2	3302	16	39	49	12	0	intron_retention	TRUE	canonical	3	68	junction_1	18.1805008799235	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGGTTCTTGTTGCTG	NA	False	NA	1	True	AATAAA	-22	NA	100449850	100400676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205
transcript_48043.known	chr15	-	1903	14	FSM	ENSMUSG00000009733.10	ENSMUST00000229581.2	1903	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	28.5781395330696	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAATCTCATTGTCTTGT	NA	False	NA	NA	False	ATTAAA	-40	NA	100449668	100407412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100407556_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205
transcript_48052.known	chr15	-	3654	2	FSM	ENSMUSG00000009739.18	ENSMUST00000177335.2	3654	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTCTCTGCCTATTTTG	8506	False	NA	-3	True	AATAAA	-18	NA	100478112	100473201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100476500_100477756
transcript_48053.known	chr15	-	4953	11	FSM	ENSMUSG00000009739.18	ENSMUST00000073837.13	4953	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	17.6751237619429	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTGCCTATTTTGTTG	NA	False	NA	0	True	AATAAA	-21	NA	100497865	100473198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100476500_100477756_100477926_100478690_100478833_100481108_100481313_100481911_100482041_100483755_100484010_100484524_100484654_100485669_100485787_100489721_100489915_100491853_100491947_100497643
transcript_48056.nic	chr15	+	2364	4	NIC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	-216	0	combination_of_known_junctions	FALSE	canonical	3	516	junction_1	340.746565972751	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	18	True	AATAAA	-25	NA	100513598	100518642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_100514204_100514793_100514913_100515805_100516052_100517248
transcript_48057.known	chr15	+	2135	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	18	True	AATAAA	-25	NA	100513229	100518642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
transcript_48060.known	chr15	-	1135	4	FSM	ENSMUSG00000053559.14	ENSMUST00000066068.7	1135	4	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_3	209.183067086119	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCCTTGTTCTGCTTAA	NA	False	NA	16	True	ATTAAA	-37	NA	100534736	100519219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534439
transcript_48061.known	chr15	-	920	4	FSM	ENSMUSG00000053559.14	ENSMUST00000172334.9	920	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	158.779371736032	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTTGTTTGATCTGA	NA	False	NA	-94	True	NA	NA	NA	100534821	100519329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534629
transcript_48062.known	chr15	-	880	4	FSM	ENSMUSG00000053559.14	ENSMUST00000230280.2	880	4	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	291.611994875992	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTCATTTTCAAGAACT	NA	False	NA	-7	True	ATTAAA	-14	NA	100534572	100519242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100519840_100520509_100520591_100534067_100534137_100534439
transcript_48063.known	chr15	-	586	4	FSM	ENSMUSG00000053559.14	ENSMUST00000229965.2	586	4	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	287.836759292485	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAGTGCTCGAAACCGA	NA	False	NA	NA	False	NA	NA	NA	100534745	100519519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100519840_100520509_100520591_100534067_100534137_100534629
transcript_48068.nnic	chr15	-	2009	12	NNC	ENSMUSG00000098112.9	novel	2036	11	NA	NA	-27	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	44.499419626636	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCGAGGTGTCTTGCCCT	NA	False	NA	-8	True	AATAAA	-14	NA	100567461	100538966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_100539184_100539228_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
transcript_48069.known	chr15	-	2036	11	FSM	ENSMUSG00000098112.9	ENSMUST00000183211.8	2036	11	0	0	0	0	multi-exon	TRUE	canonical	2	83	junction_1	21.2593508837876	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGCCCTGAACAGCCA	NA	False	NA	1	True	AATAAA	-23	NA	100567434	100538957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
transcript_48070.known	chr15	-	1671	10	FSM	ENSMUSG00000098112.9	ENSMUST00000238935.2	1671	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	41.3682648093117	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTAATCGTAAGGTTT	NA	False	NA	NA	False	AATAGA	-13	NA	100567386	100542519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100543418_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
transcript_48072.nic	chr15	-	1087	6	ISM	ENSMUSG00000023031.9	ENSMUST00000023775.9	1108	8	2553	4	-4	0	3prime_fragment	FALSE	canonical	2	9	junction_4	10.6695829346793	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGTGCTTGCATTTA	8438	False	NA	-2	True	AATAAA	-16	NA	100583249	100572305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580905_100582460_100582587_100583014
transcript_48075.known	chr15	-	456	4	FSM	ENSMUSG00000023031.9	ENSMUST00000229235.2	456	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	10.8730042868667	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGCTGAGGTTATCGCT	5954	False	NA	NA	False	NA	NA	NA	100581000	100572504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580934
transcript_48076.known	chr15	-	1108	8	FSM	ENSMUSG00000023031.9	ENSMUST00000023775.9	1108	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	12.7998724483441	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCTTGCATTTATAAT	5885	False	NA	2	True	AATAAA	-20	NA	100585802	100572301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580905_100582460_100582587_100583014_100583116_100585005_100585089_100585734
transcript_48081.known	chr15	-	2746	12	FSM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_7	8.71021059418435	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAGAAAACAGAAAAGGAGT	1674	False	NA	NA	False	NA	NA	NA	100618358	100590744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100618287
transcript_48082.nnic	chr15	-	3801	12	NNC	ENSMUSG00000037280.13	novel	3796	12	NA	NA	-66	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	26.9471475360673	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTTGGATTTGAGTT	1608	False	NA	-7	True	AATAAA	-19	NA	100618424	100589693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100618349
transcript_48083.known	chr15	-	3798	12	FSM	ENSMUSG00000037280.13	ENSMUST00000052069.12	3798	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_11	26.1268362081583	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGATGTTGGATTTGAG	9875	False	NA	-9	True	AATAAA	-17	NA	100627257	100589695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100627183
transcript_48086.nic	chr15	-	3871	11	ISM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	97	-1051	97	0	3prime_fragment	FALSE	canonical	3	77	junction_7	8.59127464349732	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATGTTGGATTTGAGTT	1771	False	NA	-7	True	AATAAA	-19	NA	100618261	100589693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895
transcript_48094.known	chr15	+	11790	25	FSM	ENSMUSG00000023032.13	ENSMUST00000023776.13	11790	25	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	8.52355804031783	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTTCTGTGCTGGTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	100659627	100721849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100659856_100672510_100672593_100680826_100680977_100681667_100681804_100682595_100682757_100685044_100685234_100686040_100686127_100686890_100687049_100687715_100687804_100688786_100688934_100689477_100689579_100693643_100693819_100694385_100694520_100695873_100696120_100697527_100697634_100698360_100698523_100701115_100701230_100704130_100704293_100705081_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100711080_100712330_100712427_100713499
transcript_48099.nic	chr15	+	3451	24	ISM	ENSMUSG00000023032.13	ENSMUST00000023776.13	11790	25	-12	9424	-12	-1256	5prime_fragment	FALSE	canonical	3	11	junction_2	7.66673515763494	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAGGAGAGCTCTTGTTT	NA	False	NA	NA	False	CATAAA	-24	NA	100659615	100712425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_100659856_100672510_100672593_100680826_100680977_100681667_100681804_100682595_100682757_100685044_100685234_100686040_100686127_100686890_100687049_100687715_100687804_100688786_100688934_100689477_100689579_100693643_100693819_100694385_100694520_100695873_100696120_100697527_100697634_100698360_100698523_100701115_100701230_100704130_100704293_100705081_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100711080_100712330
transcript_4810.known	chr1	-	1901	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	1633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	-10	True	AATAAA	-23	NA	135186176	135181316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
transcript_48105.known	chr15	+	3532	24	FSM	ENSMUSG00000023032.13	ENSMUST00000162049.2	3532	24	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	9.00556433744809	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTTTCTCTGATACTC	4515	False	NA	11	True	ATTAAA	-19	NA	100679134	100713816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_100679220_100680826_100680977_100681667_100681804_100682595_100682757_100685044_100685234_100686040_100686127_100686890_100687049_100687715_100687804_100688786_100688934_100689477_100689579_100693643_100693819_100694385_100694520_100695873_100696120_100697527_100697634_100698360_100698523_100701115_100701230_100704130_100704293_100705081_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100711080_100712330_100712427_100713499
transcript_4811.known	chr1	-	2095	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	1679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGAGCTCTCTGTGTAC	NA	False	NA	-6	True	AATAAA	-27	NA	135186306	135181312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
transcript_4812.known	chr1	-	7280	6	FSM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	0	0	0	0	multi-exon	FALSE	canonical	3	2331	junction_5	176.235070289656	479	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGCCATGATGTT	NA	False	NA	NA	False	NA	NA	NA	135241516	135222950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
transcript_48129.nic	chr15	+	1145	7	NIC	ENSMUSG00000023033.15	novel	7120	27	NA	NA	20	146	combination_of_known_junctions	TRUE	canonical	0	0	junction_3	22.1560124771785	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACATGCTTATAAACCCTT	6948	False	NA	NA	False	AATAAA	-12	NA	100768804	100857815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_100768950_100834151_100834482_100853290_100853410_100854909_100855000_100855341_100855471_100857220_100857313_100857575
transcript_48132.known	chr15	+	1818	10	FSM	ENSMUSG00000000530.17	ENSMUST00000119063.8	1818	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCCGTCTGGGCTGC	NA	False	NA	NA	False	AATACA	-18	NA	101026802	101041521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101026945_101032556_101032625_101033178_101033425_101033629_101033842_101034008_101034109_101034864_101035012_101035244_101035521_101036088_101036287_101038947_101039079_101041223
transcript_48135.known	chr15	+	1852	11	FSM	ENSMUSG00000000530.17	ENSMUST00000117984.8	1852	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.8	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGCCTCCGTCTGGGCT	NA	False	NA	NA	False	AATACA	-16	NA	101026454	101041519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101026465_101026807_101026945_101032525_101032625_101033178_101033425_101033629_101033842_101034008_101034109_101034864_101035012_101035244_101035521_101036088_101036287_101038947_101039079_101041223
transcript_48138.known	chr15	+	4418	9	FSM	ENSMUSG00000000532.12	ENSMUST00000000544.12	4418	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_8	3.66571957465379	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGATCCCGTCTGCCTT	NA	False	NA	21	True	ATTAAA	-18	NA	101071947	101111565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101072117_101091812_101092053_101092689_101092939_101096664_101096896_101099858_101100027_101100818_101100976_101102333_101102459_101106960_101107092_101108617
transcript_48145.known	chr15	+	2033	8	FSM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	31.968096341094	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCAGTGTGGTAACT	6241	False	NA	12	True	TATAAA	-21	NA	101122068	101130637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101122426_101124794_101124845_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865_101128933_101129397
transcript_48151.nnic	chr15	+	1753	7	NNC	ENSMUSG00000000531.6	novel	2033	8	NA	NA	4085	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	64.6838465151849	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCAGTGTGGTAACT	NA	False	NA	12	True	TATAAA	-21	NA	101126153	101130637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_101126281_101126712_101126768_101126871_101126975_101128414_101128509_101128605_101128673_101128865_101128933_101129397
transcript_48158.known	chr15	-	484	3	FSM	ENSMUSG00000097915.3	ENSMUST00000229239.2	484	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCCTGATTCCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	101122658	101119905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_101120071_101121361_101121515_101122492
transcript_48163.known	chr15	+	2553	8	FSM	ENSMUSG00000023034.8	ENSMUST00000228985.2	2553	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	37.8897433754997	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	517	False	NA	19	True	AATAAA	-21	NA	101152149	101172676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101152233_101156188_101156308_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
transcript_48170.known	chr15	+	2477	7	FSM	ENSMUSG00000023034.8	ENSMUST00000023779.8	2477	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	46.5895195653844	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	19	True	AATAAA	-21	NA	101164726	101172676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101164853_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
transcript_48172.nnic	chr15	+	2597	7	NNC	ENSMUSG00000023034.8	novel	893	2	NA	NA	998	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	68.8486665730636	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	19	True	AATAAA	-21	NA	101165724	101172676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_101165971_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
transcript_48178.known	chr15	+	1270	3	FSM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_2	16.5	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8030	False	NA	31	True	AATAAA	-23	NA	101182152	101188826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101182427_101184813_101185132_101188148
transcript_48179.known	chr15	+	4094	9	FSM	ENSMUSG00000023039.18	ENSMUST00000068904.9	4094	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	16.0078105935821	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGTGATGTTTATATTA	NA	False	NA	NA	False	NA	NA	NA	101310282	101328194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101310661_101311849_101312062_101314101_101314163_101316198_101316295_101317383_101317549_101318354_101318481_101321150_101321372_101324969_101325005_101325394
transcript_48182.known	chr15	-	2811	8	FSM	ENSMUSG00000037185.10	ENSMUST00000230909.2	2811	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.05038572777248	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATAATGTTGCTGTGCA	8287	False	NA	NA	False	AATAAA	-17	NA	101262459	101246203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_101247921_101248049_101248106_101248876_101249098_101249554_101249681_101250057_101250223_101256527_101256624_101257360_101257422_101262090
transcript_48183.known	chr15	+	833	4	FSM	ENSMUSG00000116114.2	ENSMUST00000229658.2	833	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCTCTGCACCCAGGGG	923	False	NA	NA	False	NA	NA	NA	101262620	101302080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101262669_101264782_101265322_101301319_101301441_101301955
transcript_48185.known	chr15	-	2097	9	FSM	ENSMUSG00000061397.9	ENSMUST00000023799.8	2097	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGTGACTCCAGTCT	3223	False	NA	NA	False	AATAAA	-20	NA	101848759	101837766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_101838364_101838602_101838638_101839112_101839334_101839859_101839986_101840186_101840352_101844539_101844636_101844735_101844797_101846260_101846479_101848181
transcript_48188.known	chr15	-	1958	9	FSM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_8	4.93552175559991	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGCATTCGTGTAGGT	5892	False	NA	6	True	AATAAA	-32	NA	101912917	101905132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_101905569_101906094_101906154_101906287_101906509_101906825_101906952_101907208_101907374_101907865_101907962_101909014_101909076_101909851_101910061_101912332
transcript_48189.known	chr15	+	1437	7	FSM	ENSMUSG00000023043.8	ENSMUST00000023803.8	1437	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	6.13731754650732	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGTCTTCCTTGGCAG	NA	False	NA	12	True	AATAAA	-24	NA	101936614	101940462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101937110_101937900_101937984_101938257_101938415_101939053_101939219_101939329_101939456_101939730_101939955_101940275
transcript_48192.known	chr15	+	3854	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	49	True	AATAAA	-19	NA	101982207	102005608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
transcript_482.known	chr1	-	8006	22	FSM	ENSMUSG00000005886.15	ENSMUST00000068304.13	8006	22	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_10	11.9773027979143	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATTTAATAAATTTTAAT	NA	False	NA	-53	True	AATAAA	-18	NA	13444307	13209382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_13212997_13217098_13217189_13218540_13218740_13219154_13219333_13220913_13221143_13222602_13222681_13223020_13223300_13226593_13226760_13230384_13230515_13232296_13232513_13237119_13237331_13244302_13245573_13247297_13247446_13250704_13250849_13251439_13251542_13254398_13254588_13256956_13257135_13260310_13260415_13291530_13291704_13294832_13294938_13356192_13356250_13444161
transcript_48202.known	chr15	+	1548	9	FSM	ENSMUSG00000058655.10	ENSMUST00000229400.2	1548	9	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_1	91.3643119604148	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTCTTTTTTTATTGACC	NA	False	NA	NA	False	AATAAA	-10	NA	101982298	101998782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300
transcript_48207.known	chr15	+	4268	29	FSM	ENSMUSG00000037003.17	ENSMUST00000228958.2	4268	29	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	4.23180378388532	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAAGCCACAAGCTCCGA	9358	False	NA	NA	False	NA	NA	NA	102008847	102024431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102008988_102012964_102013074_102013773_102013812_102014678_102014718_102015025_102015065_102015223_102015274_102015449_102015622_102015916_102015968_102016236_102016360_102016445_102016511_102017289_102017374_102017755_102017869_102017947_102018009_102018134_102018211_102018905_102019036_102019113_102019180_102019305_102019420_102019516_102020729_102020863_102021012_102021101_102021668_102021770_102021861_102022144_102022271_102022475_102022569_102022695_102022774_102022905_102022984_102023424_102023594_102023995_102024065_102024171_102024202_102024292
transcript_48209.known	chr15	-	2456	11	FSM	ENSMUSG00000036966.16	ENSMUST00000154032.2	2456	11	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	18.3913022921162	336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGGAAGGGGAATCCTT	NA	False	NA	-5	True	AATAAA	-26	NA	102044669	102024962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102038849_102039100_102039226_102040302_102040379_102041850_102041998_102044570
transcript_48216.known	chr15	+	2208	15	FSM	ENSMUSG00000023045.14	ENSMUST00000023806.14	2208	15	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	3.76408917893011	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATCTTGTCTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	102058960	102071904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102059148_102059540_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
transcript_48220.nic	chr15	+	2173	14	ISM	ENSMUSG00000023045.14	ENSMUST00000023806.14	2208	15	428	0	-162	0	3prime_fragment	FALSE	canonical	3	11	junction_9	3.75113395084203	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATCTTGTCTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	102059388	102071904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
transcript_4823.known	chr1	-	1763	5	FSM	ENSMUSG00000041889.8	ENSMUST00000041240.4	1763	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	2.8613807855649	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGAGTCCGTCCTTCCTT	NA	False	NA	3	True	NA	NA	NA	135302975	135298794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135299735_135299934_135300103_135300889_135301024_135302115_135302288_135302626
transcript_48234.nic	chr15	-	2345	18	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	39.6618928436936	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAGAAAAAAA	6609	False	NA	NA	False	NA	NA	NA	102112351	102085747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102110878_102111010_102111571_102111696_102112130
transcript_48243.nic	chr15	-	2214	17	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	39.7570257155889	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAGAAAAAAA	6609	False	NA	NA	False	NA	NA	NA	102112351	102085747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102111571_102111696_102112130
transcript_4825.known	chr1	-	1404	3	FSM	ENSMUSG00000041889.8	ENSMUST00000159918.2	1404	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTATGAGTCCGTCCTTC	NA	False	NA	0	True	NA	NA	NA	135301188	135298797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135299735_135299934_135300103_135300889
transcript_48254.nic	chr15	-	2413	16	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	33.4241429708128	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTATGTTTTAAAG	6600	False	NA	NA	False	AATAAA	-17	NA	102112360	102085433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112130
transcript_48260.nic	chr15	-	2099	16	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	33.4241429708128	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAGAAAAAAA	6600	False	NA	NA	False	NA	NA	NA	102112360	102085747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112130
transcript_48261.nic	chr15	-	2020	16	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	28.5420547418873	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAGAAAAAAA	6236	False	NA	NA	False	NA	NA	NA	102112724	102085747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112573
transcript_48277.nnic	chr15	-	2000	15	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	34.0377941202339	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAGAAAAAAA	6623	False	NA	NA	False	NA	NA	NA	102112337	102085747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102112130
transcript_4828.known	chr1	-	4189	25	FSM	ENSMUSG00000041879.14	ENSMUST00000161189.8	4189	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	161.892405756622	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTCTGCATACTCTAAG	NA	False	NA	-19	True	AGTAAA	-19	NA	135358229	135312210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135354668_135354780_135358005
transcript_48308.nic	chr15	+	4398	8	NIC	ENSMUSG00000046897.18	novel	4241	8	NA	NA	-191	-63	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	55.5683069266455	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCAGTGTATGTTCCTTCG	715	False	NA	10	True	ATTAAA	-1	NA	102111891	102123970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102112238_102113005_102113522_102113663_102113741_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
transcript_48309.nic	chr15	+	4461	8	NIC	ENSMUSG00000046897.18	novel	4241	8	NA	NA	-191	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	55.5683069266455	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	715	False	NA	17	True	AATAAA	-18	NA	102111891	102124033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102112238_102113005_102113522_102113663_102113741_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
transcript_48310.known	chr15	+	4241	8	FSM	ENSMUSG00000046897.18	ENSMUST00000118729.8	4241	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	56.9883625785805	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCTCTTTGAGAAGACT	906	False	NA	24	True	AATAAA	-25	NA	102112082	102124040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102112238_102113005_102113522_102113663_102113741_102116205_102116356_102116706_102116797_102117187_102117312_102117589_102117709_102121030
transcript_48317.known	chr15	+	3932	7	FSM	ENSMUSG00000046897.18	ENSMUST00000119168.8	3932	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	66.283901179363	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	917	False	NA	17	True	AATAAA	-18	NA	102112093	102124033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102112238_102113005_102113319_102113663_102113741_102116205_102116356_102116670_102116797_102117589_102117709_102121030
transcript_48319.known	chr15	+	989	7	FSM	ENSMUSG00000046897.18	ENSMUST00000141465.9	989	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	67.1203314122397	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGATGCCAGTCCAAGAC	949	False	NA	NA	False	NA	NA	NA	102112125	102121075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102112238_102113005_102113319_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
transcript_48322.nic	chr15	+	4088	7	NIC	ENSMUSG00000046897.18	novel	989	7	NA	NA	-134	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	67.6824694190945	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	772	False	NA	17	True	AATAAA	-18	NA	102111948	102124033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102112238_102113005_102113319_102116205_102116356_102116706_102116797_102117187_102117312_102117589_102117709_102121030
transcript_48330.nic	chr15	+	4321	7	NIC	ENSMUSG00000046897.18	novel	989	7	NA	NA	-191	-63	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	66.5699298148613	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCAGTGTATGTTCCTTCG	715	False	NA	10	True	ATTAAA	-1	NA	102111891	102123970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102112238_102113005_102113522_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
transcript_48331.nic	chr15	+	4384	7	NIC	ENSMUSG00000046897.18	novel	989	7	NA	NA	-191	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	66.5699298148613	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	715	False	NA	17	True	AATAAA	-18	NA	102111891	102124033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102112238_102113005_102113522_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
transcript_48334.nic	chr15	+	4348	7	NIC	ENSMUSG00000046897.18	novel	4241	8	NA	NA	-191	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	67.1912692741153	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCATGTCCTCTTTGA	715	False	NA	17	True	AATAAA	-18	NA	102111891	102124033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102112238_102113005_102113522_102116205_102116356_102116706_102116797_102117187_102117312_102117589_102117709_102121030
transcript_4834.known	chr1	-	6247	24	FSM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	0	0	0	0	multi-exon	TRUE	canonical	3	518	junction_15	35.6964730086209	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCCTGTCAGTTTCAGT	NA	False	NA	-4	True	AATAAA	-21	NA	135358237	135310049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
transcript_48357.known	chr15	-	2279	15	FSM	ENSMUSG00000023044.3	ENSMUST00000023805.3	2279	15	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_14	14.588400480225	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTATGTTTTAAAG	2729	False	NA	NA	False	AATAAA	-17	NA	102097493	102085433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321
transcript_48358.known	chr15	-	1786	14	FSM	ENSMUSG00000023044.3	ENSMUST00000230288.2	1786	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	33.1450104235363	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAGAAAAGA	2812	False	NA	NA	False	NA	NA	NA	102097410	102085753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102086222_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321
transcript_48360.known	chr15	-	2683	15	FSM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_13	6.6719791758105	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGCCTCTACTTTACT	NA	False	NA	-1	True	AATAAA	-14	NA	102140379	102124429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102135832_102136037_102140285
transcript_48361.nnic	chr15	-	2540	15	NNC	ENSMUSG00000001281.11	novel	2683	15	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	12.8030608585189	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTGAGCCTCTACTTT	NA	False	NA	-4	True	AATAAA	-11	NA	102140385	102124432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102135978_102136037_102140285
transcript_48362.nic	chr15	-	2528	14	NIC	ENSMUSG00000001281.11	novel	2683	15	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	12.5302002042969	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGCCTCTACTTTACT	NA	False	NA	-1	True	AATAAA	-14	NA	102140385	102124429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102124703_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102135832_102136037_102140285
transcript_48364.nic	chr15	-	2459	14	NIC	ENSMUSG00000001281.11	novel	2683	15	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_13	12.7794213275663	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTGAGCCTCTACTTT	NA	False	NA	-4	True	AATAAA	-11	NA	102140362	102124432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102140285
transcript_48367.known	chr15	-	2953	10	FSM	ENSMUSG00000001288.16	ENSMUST00000043172.15	2953	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	31.3049516849971	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGGTGTGGATCCCTCTA	NA	False	NA	0	True	AATAAA	-16	NA	102165952	102143372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102160853_102161180_102164904_102164975_102165674
transcript_48369.nic	chr15	-	2411	8	NIC	ENSMUSG00000001288.16	novel	2953	10	NA	NA	245	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_7	24.6344706226284	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGGTGTGGATCCCTCTA	NA	False	NA	0	True	AATAAA	-16	NA	102151779	102143372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102151647
transcript_48370.known	chr15	-	2718	8	FSM	ENSMUSG00000001288.16	ENSMUST00000063339.14	2718	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	9.19183310979738	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCGGGTGTGGATCCCTC	NA	False	NA	-2	True	AATAAA	-14	NA	102154935	102143374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102154494
transcript_48373.known	chr15	+	1754	2	FSM	ENSMUSG00000045665.6	ENSMUST00000051341.6	1754	2	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_1	0	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTCTCCTGTACCCA	NA	False	NA	27	True	AATAAA	-23	NA	102187888	102190189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102188065_102188611
transcript_48374.known	chr15	+	6658	31	FSM	ENSMUSG00000058290.5	ENSMUST00000064924.6	6658	31	0	0	0	0	multi-exon	TRUE	canonical	3	138	junction_1	58.1614706370692	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTGAGAGTTGAAGCTA	359	False	NA	17	True	AATAAA	-17	NA	102204700	102232792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102204851_102205194_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
transcript_48375.known	chr15	+	6635	31	FSM	ENSMUSG00000058290.5	ENSMUST00000229050.2	6635	31	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	63.2712063703195	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTTCTTTAATGTGAC	391	False	NA	-28	True	TTTAAA	-27	NA	102204732	102232747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102204851_102205140_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
transcript_48392.known	chr15	+	1062	6	FSM	ENSMUSG00000001289.13	ENSMUST00000166658.8	1062	6	0	0	0	0	multi-exon	FALSE	canonical	3	835	junction_1	29.5932424718887	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCGGGACGCACAACGGC	334	False	NA	NA	False	NA	NA	NA	102234550	102240308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102234696_102234867_102234971_102235252_102235285_102236956_102237032_102237146_102237253_102239707
transcript_48394.known	chr15	+	570	5	FSM	ENSMUSG00000001289.13	ENSMUST00000001335.7	570	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	370.883741892254	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGGGGTGGTCTATTCT	407	False	NA	26	True	AATAAA	-14	NA	102234623	102239921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102234696_102234867_102234971_102236956_102237032_102237146_102237253_102239707
transcript_48395.known	chr15	+	827	5	FSM	ENSMUSG00000001289.13	ENSMUST00000168805.8	827	5	0	0	0	0	multi-exon	FALSE	canonical	3	835	junction_1	33.0709464636257	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCGGCAATGGCCTCCTGG	386	False	NA	-52	True	AATGAA	-40	NA	102234602	102239843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102234696_102234867_102235285_102236956_102237032_102237146_102237253_102239707
transcript_48396.known	chr15	+	330	4	FSM	ENSMUSG00000001289.13	ENSMUST00000170627.8	330	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	413.913302784801	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGCACTGCAGAAATGAA	407	False	NA	NA	False	NA	NA	NA	102234623	102239784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102234696_102236956_102237032_102237146_102237253_102239707
transcript_48397.known	chr15	+	1480	7	FSM	ENSMUSG00000001285.13	ENSMUST00000113682.9	1480	7	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_2	12.1620995994387	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCCTAGGAGTACATAAC	5927	False	NA	NA	False	AATAGA	-3	NA	102240143	102246574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
transcript_48398.known	chr15	+	981	6	FSM	ENSMUSG00000001285.13	ENSMUST00000001331.13	981	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	200.273213386114	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTATTCACCTCTAACTG	5968	False	NA	-1	True	NA	NA	NA	102240184	102246269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245535_102245659_102245763_102245946_102246070
transcript_48405.known	chr15	-	1811	16	FSM	ENSMUSG00000036678.9	ENSMUST00000041208.9	1811	16	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_7	35.3844912669692	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGATGTAACTCCGAGTG	NA	False	NA	-5	True	AATAAA	-25	NA	102259194	102246686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
transcript_48406.known	chr15	-	1814	15	FSM	ENSMUSG00000036678.9	ENSMUST00000229589.2	1814	15	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_6	35.0069963852709	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	-9	True	AATAAA	-21	NA	102259130	102246690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
transcript_48407.known	chr15	+	7754	6	FSM	ENSMUSG00000001280.14	ENSMUST00000001326.7	7754	6	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	20.1295802241378	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGAGTGTTGGGAATGGG	NA	False	NA	30	True	AATAAA	-17	NA	102314814	102344839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102314858_102316206_102316368_102316650_102318155_102334065_102334232_102338391_102338592_102339159
transcript_48415.known	chr15	+	1938	11	FSM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	59.5990771740637	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102353801	102363065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102353958_102354239_102354423_102354698_102354891_102355142_102355215_102355434_102355548_102355665_102355897_102360583_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
transcript_48418.nic	chr15	+	1470	8	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	1278	0	1197	0	3prime_fragment	FALSE	canonical	2	5	junction_1	62.2893183754122	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102355079	102363065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_102355215_102355434_102355548_102355665_102355897_102360583_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
transcript_48423.nnic	chr15	+	1085	6	NNC	ENSMUSG00000023047.12	novel	611	3	NA	NA	-255	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	60.7302231183123	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360338	102363065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_102360433_102360583_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
transcript_48425.nic	chr15	+	1245	5	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	6528	0	-264	0	3prime_fragment	FALSE	canonical	3	32	junction_1	46.916814683011	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360329	102363065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
transcript_48428.known	chr15	+	1224	5	FSM	ENSMUSG00000023048.14	ENSMUST00000023810.12	1224	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	259.364969685576	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTAGTTTTGTTACTC	2378	False	NA	40	True	AATAAA	-43	NA	102367609	102371241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102367691_102367898_102368017_102368542_102368582_102368804_102369155_102370605
transcript_48430.known	chr15	+	1055	4	FSM	ENSMUSG00000023048.14	ENSMUST00000164957.8	1055	4	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	130.244215056008	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACCTGTGCCATTACC	2405	False	NA	16	True	AATAAA	-19	NA	102367636	102371217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102367691_102368542_102368582_102368804_102369155_102370605
transcript_48432.known	chr15	+	1020	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_2	60	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTCTACTCACCTGTGCC	3286	False	NA	10	True	AATAAA	-13	NA	102368517	102371211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102368582_102368804_102369155_102370605
transcript_48433.known	chr15	+	1353	4	FSM	ENSMUSG00000023048.14	ENSMUST00000171245.8	1353	4	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	222.770933671538	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCTGTGCCATTACCTT	2435	False	NA	18	True	AATAAA	-21	NA	102367666	102371219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102368017_102368542_102368582_102368804_102369155_102370605
transcript_48442.nic	chr15	-	3782	17	NIC	ENSMUSG00000023050.10	novel	4318	16	NA	NA	-14	-418	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	18.6906351885108	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCGAGGGTTTTCTTGGT	NA	False	NA	0	True	AATATA	-21	NA	102419149	102407877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102416762_102416899_102417724_102417814_102418353_102418441_102419018
transcript_48448.known	chr15	-	4318	16	FSM	ENSMUSG00000023050.10	ENSMUST00000171565.8	4318	16	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_14	18.4094178796253	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAAAACAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	102419135	102407210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102417724_102417833_102418353_102418441_102419018
transcript_48449.known	chr15	-	4210	16	FSM	ENSMUSG00000023050.10	ENSMUST00000169377.8	4210	16	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_15	20.3004105048806	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAAAGTCCATTAATTC	NA	False	NA	NA	False	ATTAAA	-22	NA	102425499	102407459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102417724_102417814_102418353_102418441_102425222
transcript_48457.nic	chr15	+	1906	15	NIC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	-111	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	164.508730616279	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	1898	False	NA	5	True	ATTAAA	-5	NA	102378862	102407316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_48458.known	chr15	+	2952	15	FSM	ENSMUSG00000056851.15	ENSMUST00000077037.13	2952	15	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	143.98145076108	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAATAAGAGTGTCTTT	2020	False	NA	NA	False	NA	NA	NA	102378984	102408496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_48460.nic	chr15	+	1950	15	NIC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	-179	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	165.568162176581	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	1830	False	NA	5	True	ATTAAA	-5	NA	102378794	102407316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_48461.nic	chr15	+	1938	15	NIC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	-179	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	145.271894974175	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	1830	False	NA	5	True	ATTAAA	-5	NA	102378794	102407316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_48470.known	chr15	+	1215	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229802.2	1215	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	168.031977796282	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAATTTTCAGTTTCTAC	2235	False	NA	-56	True	TTTAAA	-7	NA	102379199	102407055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_48471.known	chr15	+	1499	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229854.2	1499	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	165.819713890698	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2254	False	NA	5	True	ATTAAA	-5	NA	102379218	102407316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
transcript_48473.known	chr15	+	1576	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	146.176678378513	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2123	False	NA	5	True	ATTAAA	-5	NA	102379087	102407316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_48476.nic	chr15	+	1857	14	NIC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	-179	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	169.151939682124	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	1830	False	NA	5	True	ATTAAA	-5	NA	102378794	102407316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_48479.nic	chr15	+	1845	14	NIC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	-179	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	147.555385248985	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	1830	False	NA	5	True	ATTAAA	-5	NA	102378794	102407316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_48480.nnic	chr15	-	3457	14	NIC	ENSMUSG00000023050.10	novel	4318	16	NA	NA	-1	-418	combination_of_known_splicesites	FALSE	canonical	2	3	junction_13	20.1934431915163	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCGAGGGTTTTCTTGGT	NA	False	NA	0	True	AATATA	-21	NA	102419136	102407877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102419018
transcript_48481.known	chr15	-	5185	14	FSM	ENSMUSG00000023050.10	ENSMUST00000023812.10	5185	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	20.876361876704	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATTTGTCCTGTCTATG	NA	False	NA	NA	False	ATTAAA	-23	NA	102425271	102406080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102408612_102408942_102409205_102409286_102409358_102409535_102410161_102410268_102410407_102410500_102410618_102410749_102410860_102411071_102411181_102411923_102412083_102412159_102412319_102412549_102412742_102412904_102413089_102413524_102414004_102425222
transcript_48487.known	chr15	+	2571	13	FSM	ENSMUSG00000056851.15	ENSMUST00000108838.5	2571	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	188.317753780383	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAGGAATAAGAGTGTCT	2255	False	NA	NA	False	NA	NA	NA	102379219	102408494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
transcript_48495.known	chr15	+	951	9	FSM	ENSMUSG00000023051.12	ENSMUST00000154948.8	951	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	117.676463237132	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAACTGTCCACCCAGCC	NA	False	NA	NA	False	NA	NA	NA	102426991	102431654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429572_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_48499.nic	chr15	+	1439	9	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	96.5083383703191	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCCTGCTCTCTCTGGC	NA	False	NA	NA	False	AATAAA	-19	NA	102427145	102432037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_48500.nic	chr15	+	1513	9	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	96.5083383703191	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102427145	102432111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_48502.nic	chr15	+	1934	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-279	2	-12	0	intron_retention	TRUE	canonical	3	312	junction_3	28	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426614	102432109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
transcript_48507.nic	chr15	+	1566	8	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	125.715584408876	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426747	102432111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102427038_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_48509.known	chr15	+	782	8	FSM	ENSMUSG00000023051.12	ENSMUST00000142194.3	782	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	99.7595067333107	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCCTTGCGGAATTCTGT	NA	False	NA	NA	False	NA	NA	NA	102427236	102431337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
transcript_48513.nic	chr15	+	2477	7	NIC	ENSMUSG00000023051.12	novel	1819	7	NA	NA	-12	0	intron_retention	FALSE	canonical	3	365	junction_3	15.4209453522005	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426614	102432109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_+_102427038_102427556_102427727_102428909_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
transcript_48514.known	chr15	+	1819	7	FSM	ENSMUSG00000023051.12	ENSMUST00000131184.8	1819	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	131.824904913888	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426626	102432109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102427038_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
transcript_48515.known	chr15	+	1278	7	FSM	ENSMUSG00000023051.12	ENSMUST00000100168.10	1278	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	143.475510879809	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCCTGCTCTCTCTGGC	NA	False	NA	NA	False	AATAAA	-19	NA	102426791	102432037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102427038_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_48524.known	chr15	-	2523	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184485.8	2523	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	8.85605736578731	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACACAAACAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	102533874	102442006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533473
transcript_48525.known	chr15	-	7147	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184616.8	7147	12	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_11	10.1696355688543	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTATGTTTGGTGCTTCC	NA	False	NA	-1	True	ATTAAA	-16	NA	102533885	102437070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533796
transcript_48529.known	chr15	-	731	5	FSM	ENSMUSG00000062683.12	ENSMUST00000185641.7	731	5	0	0	0	0	multi-exon	FALSE	canonical	3	3206	junction_4	667.870870752723	1748	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102579452
transcript_48534.known	chr15	-	2824	15	FSM	ENSMUSG00000023055.11	ENSMUST00000023818.11	2824	15	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_14	14.2851785613836	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCATGACGTATGTT	NA	False	NA	-6	True	AATATA	-19	NA	102630613	102615211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
transcript_48535.nnic	chr15	-	2726	15	NNC	ENSMUSG00000023055.11	novel	2824	15	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_14	29.7561518249348	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCATGACGTATGTT	NA	False	NA	-6	True	AATATA	-19	NA	102630544	102615211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630510
transcript_48541.known	chr15	-	2968	14	FSM	ENSMUSG00000023055.11	ENSMUST00000171838.2	2968	14	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_13	14.4115338424578	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGACCCTGTCTGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	102630566	102616019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
transcript_48552.known	chr15	+	2461	2	FSM	ENSMUSG00000001655.7	ENSMUST00000001700.7	2461	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTGCTTGGGATCCTT	NA	False	NA	17	True	AATAAA	-25	NA	102829537	102837249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102830353_102835603
transcript_48555.nnic	chr15	+	2873	2	NNC	ENSMUSG00000050328.3	novel	1031	2	NA	NA	-4888	2243	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTGATGTTTTGAGAAC	NA	False	NA	18	True	ATTAAA	-15	NA	102840303	102849287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_102840603_102846713
transcript_48556.known	chr15	+	1031	2	FSM	ENSMUSG00000050328.3	ENSMUST00000055562.3	1031	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTCTGGCAGGCCCTTC	NA	False	NA	NA	False	NA	NA	NA	102845191	102847044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102845892_102846713
transcript_48558.known	chr15	+	2923	2	FSM	ENSMUSG00000022485.4	ENSMUST00000001709.3	2923	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCACTGTCTAAGCAATT	986	False	NA	NA	False	ATTAAA	-17	NA	102922246	102925861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102922968_102923659
transcript_48559.known	chr15	+	1983	2	FSM	ENSMUSG00000075394.5	ENSMUST00000100164.5	1983	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAATGTCTGATGGTTTC	5972	False	NA	30	True	AATAAA	-24	NA	102942820	102945278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_102943588_102944062
transcript_48560.known	chr15	-	491	3	FSM	ENSMUSG00000036061.11	ENSMUST00000231198.2	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	46	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTCCGGACCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	103071745	103064486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103064629_103066043_103066346_103071698
transcript_48561.known	chr15	-	1146	6	FSM	ENSMUSG00000009575.15	ENSMUST00000122182.2	1146	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	207.473757376686	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGCTGGCCTTTGTTTTG	NA	False	NA	-10	True	NA	NA	NA	103123732	103107681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123448_103123549_103123694
transcript_48565.nnic	chr15	-	1025	6	NIC	ENSMUSG00000009575.15	novel	1146	6	NA	NA	-43	-210	combination_of_known_splicesites	FALSE	canonical	3	31	junction_5	201.842512865848	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAAGTGTAGCTCTGTG	NA	False	NA	-11	True	AATATA	-14	NA	103148286	103107891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123448_103123549_103148159
transcript_48568.known	chr15	-	3661	5	FSM	ENSMUSG00000009575.15	ENSMUST00000108813.10	3661	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	189.635176061827	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAGGGCATTGAATCT	NA	False	NA	NA	False	NA	NA	NA	103123779	103105113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123694
transcript_48569.known	chr15	-	8803	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGTGGTAGTTTGAAG	NA	False	NA	0	True	AATAAA	-22	NA	103148243	103099970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
transcript_48579.nic	chr15	-	492	3	ISM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-45	13955	-45	-6244	5prime_fragment	FALSE	canonical	3	412	junction_2	28.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGAGGTGAGCTTCCTGC	NA	False	NA	NA	False	ATTAAA	-12	NA	103148288	103113925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_103114106_103121498_103121682_103148159
transcript_48580.nic	chr15	-	381	3	ISM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-45	14066	-45	-6355	5prime_fragment	FALSE	canonical	3	412	junction_2	28.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAAGAAGATGAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	103148288	103114036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_103114106_103121498_103121682_103148159
transcript_48582.nnic	chr15	+	2109	12	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	-552	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	5195.58052340704	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148306	103153382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
transcript_48583.nnic	chr15	+	1541	11	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	-506	-363	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	4002.55468919539	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGTGTAAAGTTAGTC	NA	False	NA	NA	False	AATAAA	-27	NA	103148352	103153019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
transcript_48584.nnic	chr15	+	2190	11	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	-792	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	4002.55468919539	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148066	103153382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
transcript_48586.known	chr15	+	1737	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	9291	junction_7	1545.88284736515	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148880	103153382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
transcript_48587.known	chr15	+	1918	11	FSM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	0	0	0	0	multi-exon	FALSE	canonical	3	2223	junction_7	4396.07925429012	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148858	103153382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
transcript_48588.known	chr15	+	1283	11	FSM	ENSMUSG00000046434.17	ENSMUST00000230171.2	1283	11	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	4985.84843431888	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	13	True	AATAAA	-13	NA	103148858	103155119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
transcript_48589.known	chr15	-	1697	3	FSM	ENSMUSG00000058794.13	ENSMUST00000075192.13	1697	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATTGTGTCTTCTTTGA	4171	False	NA	NA	False	CATAAA	-20	NA	103163866	103156638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103157876_103159355_103159526_103163576
transcript_48591.known	chr15	+	1676	9	FSM	ENSMUSG00000060992.10	ENSMUST00000100162.5	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	173.470458580128	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTGTGATGGCTCTGT	NA	False	NA	32	True	AATAAA	-20	NA	103181336	103208295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
transcript_48594.known	chr15	+	2438	8	FSM	ENSMUSG00000060992.10	ENSMUST00000230893.2	2438	8	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	184.876351397691	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGTGTGATGGCTC	NA	False	NA	29	True	AATAAA	-17	NA	103181338	103208292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313
transcript_48599.known	chr15	-	2221	7	FSM	ENSMUSG00000000552.11	ENSMUST00000229551.2	2221	7	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_6	27.1456974286698	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGCCCTCTCGCCAAGG	8816	False	NA	-25	True	AATAAA	-11	NA	103231937	103222334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103231817
transcript_48600.known	chr15	-	2298	8	FSM	ENSMUSG00000000552.11	ENSMUST00000168828.3	2298	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	68.2405708519799	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGACTCAGACTGTCT	6919	False	NA	-12	True	AATAAA	-24	NA	103248520	103222321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103241491_103241629_103248473
transcript_48601.known	chr15	-	2348	8	FSM	ENSMUSG00000000552.11	ENSMUST00000229373.2	2348	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	72.5373935938407	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGACTCAGACTGTCT	8927	False	NA	-12	True	AATAAA	-24	NA	103242754	103222321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103241491_103241629_103242657
transcript_48603.known	chr15	-	4382	30	FSM	ENSMUSG00000000555.9	ENSMUST00000023128.8	4382	30	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_15	17.8822280065433	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAGTCTGTCCTTCCAT	NA	False	NA	2	True	AATAAA	-28	NA	103275190	103252712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103253780_103254378_103254502_103255007_103255110_103256097_103256212_103256318_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000_103259081_103259190_103259284_103259372_103259524_103259804_103259873_103259967_103260106_103260441_103260597_103260684_103260741_103260910_103261013_103261342_103261389_103261569_103261762_103262000_103262210_103262473_103262527_103262694_103262752_103264352_103264397_103264503_103264549_103264742_103264869_103265205_103265252_103265346_103265409_103265618_103265740_103265874_103265988_103267476_103267608_103274726
transcript_48605.nic	chr15	-	3214	28	ISM	ENSMUSG00000000555.9	ENSMUST00000023128.8	4382	30	-28	2301	-28	-2301	5prime_fragment	FALSE	canonical	3	172	junction_13	18.3734316445732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGGTGAGTTCAAGGTT	NA	False	NA	NA	False	AAGAAA	-1	NA	103275218	103255013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr15_-_103255110_103256097_103256212_103256318_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000_103259081_103259190_103259284_103259372_103259524_103259804_103259873_103259967_103260106_103260441_103260597_103260684_103260741_103260910_103261013_103261342_103261389_103261569_103261762_103262000_103262210_103262473_103262527_103262694_103262752_103264352_103264397_103264503_103264549_103264742_103264869_103265205_103265252_103265346_103265409_103265618_103265740_103265874_103265988_103267476_103267608_103274726
transcript_48611.known	chr15	-	700	10	FSM	ENSMUSG00000022487.15	ENSMUST00000141364.8	700	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	37.8499310957182	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTTTTTCTCTTTATC	8453	False	NA	-55	True	NA	NA	NA	103338806	103310940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603_103338685_103338782
transcript_48613.known	chr15	-	799	9	FSM	ENSMUSG00000022487.15	ENSMUST00000153930.8	799	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	29.634228520412	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAAACTGTCTGTGACTT	8483	False	NA	-24	True	NA	NA	NA	103338776	103310909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603
transcript_48614.known	chr15	-	819	9	FSM	ENSMUSG00000022487.15	ENSMUST00000023129.15	819	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_8	17.7019596372831	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCCAAATATTTATATAT	8362	False	NA	54	True	TTTAAA	-29	NA	103338897	103310831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338782
transcript_48617.nnic	chr15	-	622	8	NIC	ENSMUSG00000022487.15	novel	819	9	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	42.4446818860521	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCAAGTACTTTTTTTTT	8405	False	NA	1	True	AGTAAA	-19	NA	103338854	103310884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103336766_103336812_103338782
transcript_48625.known	chr15	+	4725	31	FSM	ENSMUSG00000022488.10	ENSMUST00000047405.9	4725	31	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	3.63027394130097	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCGTGGATGTTTGCTT	NA	False	NA	10	True	ATTAAA	-24	NA	103362253	103407237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_103362409_103363397_103363509_103364266_103364360_103368611_103368669_103369965_103370109_103370928_103371020_103371106_103371245_103372792_103372842_103372932_103373090_103379655_103379713_103379953_103380051_103381194_103381305_103381465_103381599_103381943_103382026_103382226_103382286_103382479_103382626_103384028_103384162_103384404_103384525_103386704_103386851_103387150_103387283_103390386_103390606_103391941_103392073_103394758_103394857_103394972_103395067_103395219_103395303_103395535_103395617_103398418_103398513_103399337_103399455_103399892_103400003_103401647_103401738_103405838
transcript_48627.known	chr15	+	4992	30	FSM	ENSMUSG00000022488.10	ENSMUST00000229468.2	4992	30	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_9	3.66362068559819	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGGATTGTGCGTGGA	NA	False	NA	1	True	ATTAAA	-15	NA	103362220	103407228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_103362409_103363397_103363509_103364266_103364360_103368611_103368669_103369965_103370109_103370928_103371020_103371106_103371245_103372792_103372842_103372932_103373090_103379655_103379713_103379953_103380051_103381194_103381305_103381465_103381599_103381943_103382026_103382226_103382286_103382479_103382626_103384028_103384525_103386704_103386851_103387150_103387283_103390386_103390606_103391941_103392073_103394758_103394857_103394972_103395067_103395219_103395303_103395535_103395617_103398418_103398513_103399337_103399455_103399892_103400003_103401647_103401738_103405838
transcript_48628.known	chr15	+	3218	16	FSM	ENSMUSG00000022489.7	ENSMUST00000023132.5	3218	16	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	5.10163372525573	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103411460	103438479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_103411800_103411887_103412011_103428375_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
transcript_48630.known	chr15	+	3258	15	FSM	ENSMUSG00000022489.7	ENSMUST00000227955.2	3258	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	6.01740672328781	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103423346	103438479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_+_103423849_103428375_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
transcript_48631.nnic	chr15	+	2819	15	NNC	ENSMUSG00000022489.7	novel	923	3	NA	NA	3382	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.54497782226017	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103426728	103438479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_103426792_103428375_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
transcript_48632.nnic	chr15	+	2342	11	NNC	ENSMUSG00000022489.7	novel	923	3	NA	NA	-1110	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	6.31268564083465	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTGTGGTGTTCAT	NA	False	NA	9	True	AATAAA	-15	NA	103431034	103438479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr15_+_103431102_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
transcript_48634.known	chr15	-	1306	7	FSM	ENSMUSG00000022490.8	ENSMUST00000023133.8	1306	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_5	12.4688500761787	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTTTCACCCCCTTTTC	2052	False	NA	NA	False	ATTAAA	-21	NA	103446430	103438705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103442776_103442838_103446221
transcript_48636.known	chr15	-	821	6	FSM	ENSMUSG00000022490.8	ENSMUST00000228813.2	821	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	80.2331602269286	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTCTGGAAGTAGGAGGT	2061	False	NA	NA	False	AATAGA	-7	NA	103446421	103439120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103446221
transcript_48640.known	chr16	+	3241	6	FSM	ENSMUSG00000022529.12	ENSMUST00000023176.5	3241	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	57.158026557956	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATGAATATGTATAAAT	NA	False	NA	3	True	AATAAA	-12	NA	3561956	3568645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_3562632_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
transcript_48643.known	chr16	+	3856	6	FSM	ENSMUSG00000022529.12	ENSMUST00000161630.8	3856	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	76.2532622252976	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATAAATCTTTATTGG	NA	False	NA	12	True	AATAAA	-21	NA	3562095	3568654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_3563377_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
transcript_48647.known	chr16	+	1095	3	FSM	ENSMUSG00000022529.12	ENSMUST00000160923.2	1095	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	125.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCCCTACAAGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	3562223	3567145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_3562632_3566012_3566130_3566575
transcript_48650.known	chr16	+	1779	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_6	16.217019933921	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	3094	False	NA	7	True	AATACA	-17	NA	3726688	3759011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
transcript_48653.known	chr16	+	2350	7	FSM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	0	0	0	0	multi-exon	FALSE	canonical	1	49	junction_5	41.1774614726713	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702546	3722634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3719990_3721329
transcript_48654.known	chr16	+	1279	7	FSM	ENSMUSG00000005982.15	ENSMUST00000143537.9	1279	7	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_4	55.52677032047	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGCTGGAAACGGGGAAG	NA	False	NA	NA	False	NA	NA	NA	3702546	3721613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718556_3718742_3719646_3719990_3721329
transcript_48655.nic	chr16	+	801	7	ISM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	158	17235	-56	0	5prime_fragment	FALSE	canonical	3	109	junction_6	18.4481254693623	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAATTAGAACTG	3252	False	NA	NA	False	NA	NA	NA	3726846	3741776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703
transcript_48657.nic	chr16	+	3738	6	ISM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	-48	0	-24	0	intron_retention	FALSE	canonical	1	49	junction_5	40.0149971885542	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702498	3722634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646
transcript_48661.nic	chr16	+	2278	6	NIC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	1	18	junction_1	49.660447037859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGTCTCTAGTTATTGG	NA	False	NA	38	True	AATAAA	-19	NA	3702501	3722633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_3702671_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3719990_3721329
transcript_48663.known	chr16	+	876	5	FSM	ENSMUSG00000005982.15	ENSMUST00000176625.8	876	5	0	0	0	0	multi-exon	FALSE	canonical	1	18	junction_1	55.2285026050861	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCCATCAGCCTGCCCCA	NA	False	NA	NA	False	NA	NA	NA	3702522	3719912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_3702671_3715114_3715245_3717735_3717833_3718506_3718742_3719646
transcript_48665.known	chr16	+	515	3	FSM	ENSMUSG00000014232.15	ENSMUST00000137745.2	515	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	17.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGCTCTTTCGGAGTC	3308	False	NA	NA	False	AATAAA	-14	NA	3726902	3731436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_3727018_3729314_3729427_3731148
transcript_48666.known	chr16	-	5668	3	FSM	ENSMUSG00000039789.8	ENSMUST00000090522.5	5668	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	9.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATACTTCAAGAATTT	NA	False	NA	15	True	AATAAA	-33	NA	3690260	3679391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_3684595_3689013_3689141_3689922
transcript_48667.known	chr16	-	1842	3	FSM	ENSMUSG00000039789.8	ENSMUST00000119599.3	1842	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGTGTGTGCCAATCAA	4390	False	NA	NA	False	NA	NA	NA	3702425	3683153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_3684595_3689013_3689141_3702151
transcript_48669.known	chr16	-	2592	3	FSM	ENSMUSG00000005983.16	ENSMUST00000115859.8	2592	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCTGGCACAGTGAGGG	NA	False	NA	NA	False	AATAAA	-12	NA	3726553	3722166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_3724165_3724704_3725059_3726313
transcript_48675.nic	chr16	-	6200	16	NIC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_12	9.12724858139991	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTCCTCTCTGAGAAAAC	NA	False	NA	29	True	AATAAA	-45	NA	3821684	3796987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819543_3821595
transcript_48680.nic	chr16	-	2798	12	NIC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	-50	7812	combination_of_known_junctions	FALSE	canonical	3	32	junction_8	9.57700413827116	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGAGATATATGAATTT	NA	False	NA	NA	False	AATGAA	-8	NA	3821684	3804819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819543_3821595
transcript_48681.known	chr16	-	1945	4	FSM	ENSMUSG00000039738.17	ENSMUST00000145706.2	1945	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTAGACACTCCTCTC	NA	False	NA	20	True	AATAAA	-36	NA	3800068	3796996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448
transcript_48692.known	chr16	-	2320	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	0	0	0	0	multi-exon	TRUE	canonical	3	963	junction_15	112.803285922348	1769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACGTTTTCTCTGTTCT	NA	False	NA	-3	True	ATTAAA	-22	NA	3895691	3857834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
transcript_48712.nic	chr16	-	3087	17	NIC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	-23	0	intron_retention	FALSE	canonical	3	963	junction_14	113.904410993385	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACGTTTTCTCTGTTCT	NA	False	NA	-3	True	ATTAAA	-22	NA	3895714	3857834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
transcript_48739.known	chr16	-	10820	31	FSM	ENSMUSG00000022521.11	ENSMUST00000023165.9	10820	31	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_30	8.09416799649943	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTCCGATTGGCTAAT	6012	False	NA	2	True	AATAAA	-27	NA	4031861	3899191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304_3914383_3917538_3917596_3919421_3919503_3925291_3925381_3925899_3926140_3926963_3927083_3932637_3932828_3933641_3933822_3935118_3935533_3936896_3937086_3937595_3937721_3942033_3942079_3942499_3942672_3943508_3943627_3944330_3944478_3944733_3944837_3946307_3946551_3955229_3955344_3956608_3956850_3972720_3972898_3997287_3997998_4031002
transcript_48742.known	chr16	-	4507	11	FSM	ENSMUSG00000005580.12	ENSMUST00000117801.8	4507	11	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_5	2.72763633939717	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAAAAAAAGCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	4237672	4105392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4106954_4112526_4112569_4115272_4115422_4116550_4116711_4122240_4122450_4125019_4125123_4129388_4129607_4130548_4130654_4141630_4141822_4235716_4237453_4237639
transcript_48753.nnic	chr16	-	3721	6	NNC	ENSMUSG00000022519.15	novel	3698	6	NA	NA	26995	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	10.4192130221049	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACGCCTTGGCCTTCTTG	6778	False	NA	-3	True	AATAAA	-15	NA	4313932	4298079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4313829
transcript_48754.nic	chr16	-	3846	6	NIC	ENSMUSG00000022519.15	novel	3698	6	NA	NA	-91	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	3.76297754444536	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACGCCTTGGCCTTCTTG	NA	False	NA	-3	True	AATAAA	-15	NA	4359771	4298079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4359543
transcript_48760.nnic	chr16	-	1887	7	NNC	ENSMUSG00000005718.9	novel	2247	7	NA	NA	130	0	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_6	38.4953099596417	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTAGTTATTGAGGATG	NA	False	NA	0	True	AATAAA	-22	NA	4376517	4362524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4376450
transcript_48761.known	chr16	-	2247	7	FSM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	11.6010057035299	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTAGTTATTGAGGATG	NA	False	NA	0	True	AATAAA	-22	NA	4377718	4362524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4377291
transcript_48766.known	chr16	+	3619	7	FSM	ENSMUSG00000014303.14	ENSMUST00000014447.13	3619	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	16.3978318349985	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTGGGACACCTGCT	NA	False	NA	36	True	AATAAA	-30	NA	4412576	4433821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4412800_4426461_4426683_4428121_4428295_4429143_4429321_4429396_4429531_4429614_4429734_4431249
transcript_48775.known	chr16	-	431	5	FSM	ENSMUSG00000014301.14	ENSMUST00000156889.8	431	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	540.041433595609	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442800	4434327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4434498_4434676_4434743_4434989_4435014_4435782_4435868_4442714
transcript_48776.known	chr16	-	596	5	FSM	ENSMUSG00000014301.14	ENSMUST00000014445.7	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	1132	junction_4	70.3491293478462	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442852	4434327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
transcript_48777.nnic	chr16	-	714	5	NNC	ENSMUSG00000014301.14	novel	596	5	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	540.407947757988	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442823	4434327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4436015_4442714
transcript_48785.known	chr16	+	2648	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501933	4525559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
transcript_48788.known	chr16	+	2505	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	1818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501959	4525559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
transcript_488.known	chr1	-	2938	11	FSM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	0	0	0	0	multi-exon	FALSE	canonical	3	1226	junction_5	62.5811473208985	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTCTATTTTTTGTAA	9656	False	NA	-9	True	ATTAAA	-15	NA	13660134	13634921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323_13648383_13649673_13649791_13649913_13650036_13651246_13651311_13659823
transcript_48806.known	chr16	+	2829	2	FSM	ENSMUSG00000039646.6	ENSMUST00000038770.4	2829	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGCTTGAGATTTAAGG	NA	False	NA	NA	False	AATAAA	-28	NA	4457804	4468666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4458013_4466045
transcript_48807.known	chr16	-	1150	10	FSM	ENSMUSG00000039637.16	ENSMUST00000090480.6	1150	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	36.6029749853448	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGAAGAGAAATGCCTGC	NA	False	NA	NA	False	ACTAAA	-19	NA	4497641	4470426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4470626_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
transcript_48808.known	chr16	-	4296	28	FSM	ENSMUSG00000039637.16	ENSMUST00000038552.13	4296	28	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_15	10.2195380265448	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAGCAGTGTCTCTCATC	NA	False	NA	NA	False	NA	NA	NA	4497641	4443996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452295_4452452_4452546_4452625_4452772_4452848_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
transcript_48809.known	chr16	-	2280	7	FSM	ENSMUSG00000039637.16	ENSMUST00000123031.8	2280	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	7.63762615825973	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	AAAAAG	-9	NA	4497577	4478165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
transcript_48811.known	chr16	-	1459	6	FSM	ENSMUSG00000063445.15	ENSMUST00000079130.14	1459	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	91.0788669231233	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4596	False	NA	-6	True	AATAAA	-18	NA	4537220	4529180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4533464_4533495_4534160_4534400_4536758
transcript_48813.known	chr16	-	2440	5	FSM	ENSMUSG00000063445.15	ENSMUST00000120056.8	2440	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	12.1243556529821	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAAACTTTTGTCCTTT	4843	False	NA	NA	False	NA	NA	NA	4536973	4527922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4534160_4534400_4536758
transcript_48814.known	chr16	-	1306	5	FSM	ENSMUSG00000063445.15	ENSMUST00000115851.10	1306	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	76.6811580507233	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4796	False	NA	-6	True	AATAAA	-18	NA	4537020	4529180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4529545_4531503_4531695_4532280_4532531_4534160_4534400_4536758
transcript_48819.nic	chr16	-	1156	4	ISM	ENSMUSG00000063445.15	ENSMUST00000074970.8	1155	5	-32	1119	12	1095	5prime_fragment	FALSE	canonical	3	167	junction_3	9.79795897113271	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTCCTGGCTAGGTTTTT	4808	False	NA	NA	False	NA	NA	NA	4537008	4531277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_4531695_4532280_4532531_4534160_4534400_4536758
transcript_48825.known	chr16	+	1730	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACCTGTGATTTTTCCT	NA	False	NA	9	True	CATAAA	-17	NA	4544226	4584606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
transcript_48828.known	chr16	-	1964	6	FSM	ENSMUSG00000004071.14	ENSMUST00000117713.8	1964	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	194.363988434072	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGCCTCTGCTGTCTTG	NA	False	NA	-19	True	ATTAAA	-21	NA	4607794	4585202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4586514_4586608_4586832_4587503_4587660_4587906_4588016_4588534_4588600_4607694
transcript_48829.known	chr16	-	3953	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACTTTGGCTCTATACT	NA	False	NA	-3	True	TATAAA	-21	NA	4607854	4583324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
transcript_4883.known	chr1	-	2622	14	FSM	ENSMUSG00000009418.17	ENSMUST00000190130.2	2622	14	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_13	20.1608913111881	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAGAAAAAGAAGAAGAG	3298	False	NA	NA	False	NA	NA	NA	135438189	135386417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135391652_135391677_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135437941
transcript_48830.known	chr16	-	2554	6	FSM	ENSMUSG00000004071.14	ENSMUST00000118703.8	2554	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	186.698259231306	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4608156	4584704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4608015
transcript_48841.nic	chr16	-	3227	5	NIC	ENSMUSG00000004071.14	novel	3953	6	NA	NA	-33	0	intron_retention	FALSE	canonical	3	434	junction_4	30.8139578762612	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4607887	4584704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_4586514_4586608_4587660_4587906_4588016_4588534_4588600_4607694
transcript_48847.nic	chr16	-	1744	4	NIC	ENSMUSG00000039568.7	novel	1851	3	NA	NA	-172	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	161.605142932464	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCACCAGGCTCTGTAGT	NA	False	NA	-11	True	NA	NA	NA	4698351	4692651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_4692962_4693230_4693734_4694225_4694286_4697480
transcript_48848.known	chr16	-	1851	3	FSM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	8.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTAGTCTTGCCTCAT	NA	False	NA	-1	True	NA	NA	NA	4698179	4692641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4693734_4694225_4694286_4697480
transcript_48852.nic	chr16	+	3264	18	NIC	ENSMUSG00000022517.18	novel	3138	17	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	83	junction_12	136.27729719254	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGTGTGCCTTTGTTC	2867	False	NA	14	True	AATAAA	-15	NA	4704055	4756160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
transcript_48857.known	chr16	+	2519	17	FSM	ENSMUSG00000022517.18	ENSMUST00000230990.2	2519	17	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_12	129.444712498232	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATGGTGGTACATGCCT	3061	False	NA	NA	False	AATAAA	-6	NA	4704249	4752953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058
transcript_48859.nic	chr16	+	3218	17	NIC	ENSMUSG00000022517.18	novel	2519	17	NA	NA	-57	0	combination_of_known_junctions	TRUE	canonical	3	83	junction_12	118.010592744889	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTATGTGTGCCTTTGTT	2867	False	NA	13	True	AATAAA	-14	NA	4704055	4756159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
transcript_4886.nnic	chr1	-	2569	4	NNC	ENSMUSG00000009418.17	novel	1645	2	NA	NA	-52	62153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.2970585407784	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTTAAAAGGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	135615895	135472031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_135472206_135528973_135530387_135534899_135535643_135615656
transcript_48863.known	chr16	+	2250	17	FSM	ENSMUSG00000022517.18	ENSMUST00000229038.2	2250	17	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	129.828191757415	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGCTGTCACTGCTGC	2943	False	NA	NA	False	NA	NA	NA	4704131	4755285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4704338_4725228_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
transcript_4887.known	chr1	-	1645	2	FSM	ENSMUSG00000009418.17	ENSMUST00000112103.2	1645	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAATAACT	NA	False	NA	NA	False	NA	NA	NA	135615843	135534184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_135535643_135615656
transcript_48874.known	chr16	+	3095	16	FSM	ENSMUSG00000022517.18	ENSMUST00000023159.10	3095	16	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_15	54.4223810169636	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTATGTGTGCCTTTGTT	2924	False	NA	13	True	AATAAA	-14	NA	4704112	4756159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
transcript_48897.known	chr16	+	1329	3	FSM	ENSMUSG00000022516.11	ENSMUST00000050881.10	1329	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	274	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTTGCTTCTGAGTG	105	False	NA	9	True	AATAAA	-15	NA	4756985	4758880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4757158_4757241_4757578_4758059
transcript_48906.known	chr16	-	2398	17	FSM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	12.8608842522589	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8223	False	NA	-5	True	AATAAA	-13	NA	4782037	4759299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_48907.nnic	chr16	-	2474	17	NNC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	-17	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	24.662408134649	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8174	False	NA	-5	True	AATAAA	-13	NA	4782086	4759299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764071_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_4891.known	chr1	+	1823	6	FSM	ENSMUSG00000026421.15	ENSMUST00000027677.8	1823	6	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	35.0884596413123	404	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	24	True	AATAAA	-17	NA	135656884	135679970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_135657013_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
transcript_48912.nic	chr16	-	2552	16	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	-17	4	intron_retention	TRUE	canonical	3	70	junction_1	11.019175206077	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGGCTCATTTGTGATC	8174	False	NA	-1	True	AATAAA	-17	NA	4782086	4759295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_48916.nic	chr16	-	2271	16	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_15	24.2840597008728	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8178	False	NA	-5	True	AATAAA	-13	NA	4782082	4759299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4781983
transcript_4892.known	chr1	+	1435	2	FSM	ENSMUSG00000041801.6	ENSMUST00000038945.6	1435	2	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_1	0	1398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCTACTGAGTGAAATTC	6745	False	NA	22	True	AATGAA	-29	NA	135693856	135696874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_135694633_135696215
transcript_48924.nic	chr16	-	2345	16	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	20.4717691793683	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAGATGCAAGTTGGTG	8174	False	NA	-18	True	NA	NA	NA	4782086	4759312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_4759662_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_4893.known	chr1	+	1105	10	FSM	ENSMUSG00000026418.17	ENSMUST00000152208.8	1105	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.8313345858061	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	7334	False	NA	43	True	ATTAAA	-24	NA	135727139	135738727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_135727235_135727710_135727759_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_48931.nic	chr16	-	2072	15	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_14	24.9154693362356	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8178	False	NA	-5	True	AATAAA	-13	NA	4782082	4759299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4781983
transcript_48949.nic	chr16	-	2011	7	ISM	ENSMUSG00000022515.7	ENSMUST00000229765.2	1779	11	-18	3803	-17	796	5prime_fragment	FALSE	canonical	3	74	junction_6	6.51707159867238	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATAAAACAAGAGTTTGC	8174	False	NA	NA	False	NA	NA	NA	4782086	4767435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_48951.known	chr16	+	2831	9	FSM	ENSMUSG00000022543.10	ENSMUST00000090457.7	2831	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.22474487139159	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCGCCTAGGAATCACT	NA	False	NA	NA	False	AATAAA	-16	NA	4782152	4796826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4782255_4783356_4783510_4784375_4784523_4786576_4787050_4789715_4789834_4791901_4792044_4794006_4794154_4794393_4794478_4795361
transcript_48952.known	chr16	+	382	4	FSM	ENSMUSG00000096215.9	ENSMUST00000184439.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	17.326921891156	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCGAGTCTGGACTGT	NA	False	NA	8	True	NA	NA	NA	4825151	4826170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4825190_4825607_4825753_4825835_4825934_4826069
transcript_48953.known	chr16	+	399	4	FSM	ENSMUSG00000096215.9	ENSMUST00000185147.8	399	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	9.41629792788369	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825215	4826173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4825283_4825607_4825753_4825835_4825919_4826069
transcript_48956.known	chr16	-	1355	11	FSM	ENSMUSG00000022540.17	ENSMUST00000202281.4	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_7	47.5572286829247	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831381	4826593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
transcript_48963.nic	chr16	-	1962	10	NIC	ENSMUSG00000022540.17	novel	1431	11	NA	NA	-23	0	intron_retention	FALSE	canonical	3	413	junction_6	42.8808282580778	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831440	4826593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4830160_4830290_4830374_4831166_4831239_4831326
transcript_4897.nic	chr1	+	1062	5	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5490	0	266	0	3prime_fragment	FALSE	canonical	3	46	junction_1	20.1912728672563	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	3837	False	NA	43	True	ATTAAA	-24	NA	135733060	135738727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_48979.known	chr16	-	1431	11	FSM	ENSMUSG00000022540.17	ENSMUST00000023191.17	1431	11	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	153.714052708267	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831391	4826593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829623_4830104_4830160_4830290_4830374_4831166_4831239_4831326
transcript_48984.nnic	chr16	-	3272	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-24	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	296.566912506689	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8086	False	NA	-1	True	AATAAA	-20	NA	4867751	4831765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_4832641_4832697_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
transcript_48993.nnic	chr16	-	3440	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_14	374.363788438131	108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8092	False	NA	-8	True	AATAAA	-13	NA	4867745	4831772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866093_4866218_4866613_4866651_4867669
transcript_49.known	ERCC-00145	+	1024	1	FSM	ERCC-00145A	DQ875386	1024	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	413	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00145_+_0_1000
transcript_49007.known	chr16	-	3292	16	FSM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_6	120.52477845747	1662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8116	False	NA	-8	True	AATAAA	-13	NA	4867721	4831772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
transcript_4905.known	chr1	+	2993	10	FSM	ENSMUSG00000041782.15	ENSMUST00000038760.10	2993	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	17.5119007154183	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTCACATAAACTCCGT	5618	False	NA	NA	False	NA	NA	NA	135746335	135761080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_135746755_135753492_135753631_135754901_135755785_135756452_135756558_135757426_135757471_135758637_135758711_135758820_135758959_135759262_135759350_135759611_135759687_135760049
transcript_49052.known	chr16	-	3990	1	FSM	ENSMUSG00000022536.15	ENSMUST00000229928.2	3990	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCATTTT	8116	False	NA	NA	False	TATAAA	-43	NA	4867721	4863731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4863700_4867700
transcript_49053.known	chr16	-	3222	8	FSM	ENSMUSG00000022536.15	ENSMUST00000231132.2	3222	8	0	0	0	0	multi-exon	FALSE	canonical	3	1044	junction_7	65.3951879899806	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8116	False	NA	NA	False	NA	NA	NA	4867721	4843716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_4844472_4847197_4847272_4847366_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613
transcript_49054.known	chr16	+	6455	19	FSM	ENSMUSG00000039473.9	ENSMUST00000052449.6	6455	19	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	22.3737197026631	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	NA	False	NA	17	True	AATAAA	-17	NA	4867931	4904149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4868646_4871591_4871706_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4899757_4899848_4901919
transcript_49055.known	chr16	+	6356	18	FSM	ENSMUSG00000039473.9	ENSMUST00000230703.2	6356	18	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_17	11.4435578952107	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTCCTCATTTTTTCA	NA	False	NA	21	True	AATAAA	-21	NA	4867920	4904153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4868646_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4899757_4899848_4901919
transcript_49056.known	chr16	+	5589	17	FSM	ENSMUSG00000039473.9	ENSMUST00000229126.2	5589	17	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_16	12.0167526291424	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTCCTCATTTTTTCA	NA	False	NA	21	True	AATAAA	-21	NA	4868597	4904153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_4868646_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4901919
transcript_49062.nic	chr16	+	1442	6	ISM	ENSMUSG00000039473.9	ENSMUST00000230703.2	6356	18	-63	22569	-63	149	5prime_fragment	FALSE	canonical	3	57	junction_2	12.6427845034233	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACACTTACGACAAGGA	NA	False	NA	NA	False	GATAAA	-14	NA	4867857	4881584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_4868646_4872940_4873229_4879845_4879933_4880398_4880495_4880803_4880939_4881536
transcript_49066.nic	chr16	+	1385	5	ISM	ENSMUSG00000039473.9	ENSMUST00000230703.2	6356	18	-63	23224	-63	-506	5prime_fragment	FALSE	canonical	3	57	junction_2	14.1310827610626	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCGAAGGTTAGGATATT	NA	False	NA	NA	False	ATTAAA	-16	NA	4867857	4880929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_4868646_4872940_4873229_4879845_4879933_4880398_4880495_4880803
transcript_49069.nic	chr16	+	1148	3	ISM	ENSMUSG00000039473.9	ENSMUST00000230703.2	6356	18	-63	24236	-63	-1518	5prime_fragment	FALSE	canonical	3	57	junction_2	3	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTGAAGAAAAATATGTAAG	NA	False	NA	NA	False	AAAAAG	-33	NA	4867857	4879917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_4868646_4872940_4873229_4879845
transcript_49074.known	chr16	-	2143	10	FSM	ENSMUSG00000023143.11	ENSMUST00000023911.11	2143	10	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	7.98764478027175	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCACCAGGGGGCGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	5021876	5013152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204_5021664_5021760
transcript_49085.known	chr16	-	2230	9	FSM	ENSMUSG00000023143.11	ENSMUST00000147567.2	2230	9	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	8.42244026396151	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCACCAGGGGGCGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	5021866	5013152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204
transcript_49086.known	chr16	+	1755	13	FSM	ENSMUSG00000039427.15	ENSMUST00000100196.9	1755	13	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_11	10.4029910228848	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGAAGTGTTTGCTCT	1280	False	NA	17	True	AATAAA	-18	NA	5051484	5062767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
transcript_49091.known	chr16	-	2170	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGCGCATGTGCACAG	NA	False	NA	-2	True	NA	NA	NA	5073847	5062015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_49097.nnic	chr16	-	1264	8	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	-47	-202	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.156061384151	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAGAAGAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	5073894	5062944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_5063250_5065340_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_49103.nic	chr16	-	1336	7	NIC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	7	-181	intron_retention	FALSE	canonical	3	270	junction_1	79.2199820471802	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGTCATGGGAAAGCGG	NA	False	NA	NA	False	NA	NA	NA	5073840	5062923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_5063250_5065316_5065464_5066428_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_49106.known	chr16	-	987	7	FSM	ENSMUSG00000022544.15	ENSMUST00000139584.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	22.2517165380311	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTTCTCTTTCTGTGG	NA	False	NA	-2	True	NA	NA	NA	5073820	5065238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_49113.known	chr16	+	1825	11	FSM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_3	20.7113495455994	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCAAGTCGTCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	8288651	8308548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
transcript_49119.nnic	chr16	+	1336	10	NIC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	49.6680337868021	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATCTTGCCCTTGAGAT	NA	False	NA	3	True	AATAAA	-12	NA	8288611	8308060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_8288730_8291694_8291831_8295830_8296194_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
transcript_49123.known	chr16	+	4636	16	FSM	ENSMUSG00000057880.13	ENSMUST00000065987.14	4636	16	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_13	3.20138858761146	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGTGAATGTGGGCT	NA	False	NA	4	True	ATTAAA	-22	NA	8331292	8439432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_8331439_8390699_8390815_8396094_8396193_8399762_8399793_8400600_8400719_8406749_8406800_8418773_8418855_8420149_8420243_8421333_8421397_8421552_8421617_8423375_8423525_8426719_8426858_8428990_8429159_8431846_8431994_8433753_8433866_8436368
transcript_49125.nnic	chr16	+	2622	16	NNC	ENSMUSG00000057880.13	novel	696	10	NA	NA	-420	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	3.7273761995985	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCAGCTTGTTGGTTCCT	NA	False	NA	NA	False	TATAAA	-15	NA	8390345	8437434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_8390476_8390699_8390815_8396094_8396193_8399762_8399793_8400600_8400719_8406749_8406800_8418773_8418855_8420149_8420243_8421333_8421397_8421552_8421617_8423375_8423525_8426719_8426858_8428990_8429159_8431846_8431994_8433753_8433866_8436368
transcript_49128.known	chr16	+	1842	9	FSM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_5	22.2528088114737	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTGTGGCCGAATCAT	NA	False	NA	17	True	AATAAA	-24	NA	8455537	8475395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
transcript_49133.known	chr16	-	2858	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	0	0	0	0	multi-exon	TRUE	canonical	3	300	junction_3	44.5146667465405	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACTGTAAAAGGTTGTG	NA	False	NA	-11	True	AATAAA	-21	NA	8490019	8476443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
transcript_49135.known	chr16	+	2370	2	FSM	ENSMUSG00000022711.17	ENSMUST00000143174.2	2370	2	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAACAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	8455601	8462880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_8455693_8460601
transcript_49136.known	chr16	-	3391	2	FSM	ENSMUSG00000043140.11	ENSMUST00000052505.10	3391	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGGGTTTTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	8455576	8451092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_8454257_8455349
transcript_49140.nic	chr16	-	4985	33	NIC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	-70	0	combination_of_known_junctions	FALSE	canonical	2	74	junction_30	226.28742784344	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGATGACTGCTGTGGAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8610242	8507463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8533608_8533784_8534378_8534484_8574679_8574937_8610099
transcript_49143.nnic	chr16	-	4748	32	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8898	0	at_least_one_novel_splicesite	FALSE	canonical	2	100	junction_31	169.206103657901	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGATGACTGCTGTGGAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8601274	8507463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8601193
transcript_49144.known	chr16	-	4745	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	0	0	0	0	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCTGTGGAAGCCGAG	NA	False	NA	NA	False	AATAAA	-26	NA	8610172	8507458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
transcript_4915.known	chr1	+	847	6	FSM	ENSMUSG00000026411.18	ENSMUST00000117950.2	847	6	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	164.577519728546	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTTCCCTTCAAATGCCC	NA	False	NA	-54	True	GGGGCT	-18	NA	135945799	135962030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_135945987_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
transcript_4916.known	chr1	+	1806	6	FSM	ENSMUSG00000026411.18	ENSMUST00000063719.15	1806	6	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	45.0759359303831	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCTAAGCAAAACCCAGAT	NA	False	NA	NA	False	ATTAAA	-18	NA	135945704	135963080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_135945801_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
transcript_4917.known	chr1	+	9115	35	FSM	ENSMUSG00000041642.19	ENSMUST00000075164.11	9115	35	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	11.0094328853373	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTGTGGCTAGTGGGTT	6174	False	NA	3	True	AATAAA	-13	NA	136059126	136105736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930_136081049_136081841_136082034_136083834_136084035_136085200_136085309_136086018_136086088_136086981_136087215_136087375_136087524_136087750_136087946_136088041_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136094899_136094939_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
transcript_49170.nic	chr16	-	1382	11	ISM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	-70	15350	-70	0	5prime_fragment	FALSE	canonical	3	419	junction_10	153.65858257839	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGGAAAGAAAAACAGTA	NA	False	NA	NA	False	NA	NA	NA	8610242	8522808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
transcript_49174.known	chr16	+	4072	4	FSM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	16.3299316185545	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACAGGGGCTTGTCTGTA	9944	False	NA	10	True	AATAAA	-21	NA	8647963	8676786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_8648550_8649184_8649266_8660831_8661108_8673657
transcript_49179.nic	chr16	+	1887	3	ISM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	-56	14791	-56	0	5prime_fragment	FALSE	canonical	3	177	junction_1	10	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTTCCGTGTCATAGAAA	9888	False	NA	8	True	AATAAA	-19	NA	8647907	8661995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_8648550_8649184_8649266_8660831
transcript_4918.nnic	chr1	+	5858	34	NIC	ENSMUSG00000041642.19	novel	9115	35	NA	NA	-20	2461	combination_of_known_splicesites	FALSE	canonical	3	14	junction_27	14.2043333317495	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTTGAAGTTTCTTCCC	6154	False	NA	41	True	AATATA	-42	NA	136059106	136102498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930_136081049_136081841_136082034_136083834_136084035_136085200_136085309_136086018_136086088_136086981_136087215_136087375_136087524_136087750_136087946_136088041_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
transcript_49183.nnic	chr16	+	1714	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	53020	937	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTAGTCTTCACTTCT	6129	False	NA	14	True	AATAAA	-24	NA	8951028	8956245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_8951217_8953545_8953645_8954818
transcript_49187.nnic	chr16	+	2257	8	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	7	junction_7	13.8047610834606	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCTGCGTGTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	8970603	9059894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Intergenic_chr16_+_8970862_9010517_9010673_9032429_9032546_9038336_9038565_9040402_9040532_9040767_9040896_9058024_9058114_9058740
transcript_49202.known	chr16	+	805	3	FSM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	5	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAATTGCTCTCTGGTCCT	NA	False	NA	68	True	NA	NA	NA	9988091	9992775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_9988189_9988278_9988356_9992144
transcript_49203.known	chr16	+	550	3	FSM	ENSMUSG00000039209.13	ENSMUST00000121292.8	550	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	241	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	29	True	AATAAA	-29	NA	9988089	9992494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_9988189_9988278_9988356_9992120
transcript_49205.nnic	chr16	+	3289	11	NNC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	-28	-2	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_10	36.5383360321731	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGGTTTTACTGTCTTT	NA	False	NA	5	True	AATAAA	-13	NA	10010741	10060913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10058730
transcript_49206.known	chr16	+	2778	11	FSM	ENSMUSG00000039200.17	ENSMUST00000044005.14	2778	11	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	27.1632104140877	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTTTACTGTCTTTTA	NA	False	NA	7	True	AATAAA	-15	NA	10010575	10060915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
transcript_49207.nic	chr16	+	2167	11	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	-3	959	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	41.4305442880009	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTGAGTGGCATTTTT	NA	False	NA	7	True	ATTAAA	-12	NA	10010807	10070301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10065308_10065462_10069241
transcript_49210.known	chr16	+	1230	10	FSM	ENSMUSG00000039200.17	ENSMUST00000117220.8	1230	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	25.7557377042739	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAAGCTACAAAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	10010785	10058678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424
transcript_49225.known	chr16	-	3440	5	FSM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	14.2894191624432	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTGTATGGTGTTTGT	NA	False	NA	-5	True	ATTAAA	-31	NA	10131832	10099612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10131675
transcript_4923.nic	chr1	+	2563	14	ISM	ENSMUSG00000041642.19	ENSMUST00000075164.11	9115	35	-20	23573	-20	4432	5prime_fragment	FALSE	canonical	3	43	junction_3	9.2946507489189	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTTCTCTGCTACTTT	6154	False	NA	NA	False	AAAAAG	-14	NA	136059106	136082163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930_136081049_136081841
transcript_49231.known	chr16	-	1803	7	FSM	ENSMUSG00000039179.14	ENSMUST00000043415.13	1803	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	2.40947204913349	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTTAGGAAAATGTGAA	NA	False	NA	4	True	AATAAA	-22	NA	10213354	10175811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10176300_10179121_10179277_10196760_10196984_10200653_10200798_10203926_10203998_10205018_10205103_10212716
transcript_49239.known	chr16	+	2121	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229811	10242292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
transcript_49259.known	chr16	+	3296	9	FSM	ENSMUSG00000022503.11	ENSMUST00000142771.8	3296	9	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	84.8099898302081	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229833	10242292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
transcript_49268.known	chr16	-	3315	7	FSM	ENSMUSG00000050908.13	ENSMUST00000051118.7	3315	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	2.91070819942883	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATTTCTCATAGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	10265226	10238420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10240750_10242062_10242123_10243623_10243753_10244864_10244994_10245246_10245337_10246522_10246668_10264793
transcript_49270.known	chr16	+	679	6	FSM	ENSMUSG00000022503.11	ENSMUST00000129280.8	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	72.6151499344317	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTTTTCAGTGTAGACA	NA	False	NA	NA	False	GATAAA	-17	NA	10229817	10238415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119
transcript_49275.known	chr16	-	1389	2	FSM	ENSMUSG00000038055.13	ENSMUST00000038281.6	1389	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTGCCTTGTCTGTT	NA	False	NA	0	True	ATTAAA	-20	NA	10360918	10348070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10348677_10360135
transcript_49276.known	chr16	+	6213	23	FSM	ENSMUSG00000068663.15	ENSMUST00000155633.8	6213	23	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_9	19.0952376045325	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGAGTGTGGCCTGCTGTT	NA	False	NA	8	True	AATAAA	-18	NA	10363227	10562742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245_10386395_10389357_10389464_10391163_10391288_10394365_10394541_10395751_10395806_10398792_10398907_10413665_10413850_10428866_10429000_10432363_10432465_10445242_10445366_10447908_10448019_10448620_10448666_10453109_10453161_10456650_10456780_10462624_10462746_10506343_10506496_10509249_10509455_10512483_10512655_10549524_10549684_10559477
transcript_49284.known	chr16	+	704	3	FSM	ENSMUSG00000068663.15	ENSMUST00000130148.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGGGGATTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	10363240	10381309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_10363507_10377884_10378014_10381000
transcript_49286.known	chr16	-	2785	2	FSM	ENSMUSG00000038037.6	ENSMUST00000038099.6	2785	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10603400	10600106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10602786_10603294
transcript_49287.known	chr16	-	621	2	FSM	ENSMUSG00000038015.7	ENSMUST00000037996.7	621	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGACTGCTGTCTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	10609969	10609243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10609499_10609603
transcript_49290.known	chr16	+	3742	2	FSM	ENSMUSG00000037991.10	ENSMUST00000037913.9	3742	2	0	0	0	0	multi-exon	TRUE	canonical	3	158	junction_1	0	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATAGTTTGTTCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	10652922	10661102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_10653255_10657692
transcript_49294.known	chr16	-	2235	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTCCCCATTCATTCT	NA	False	NA	-11	True	AATAAA	-13	NA	10810985	10777138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
transcript_49301.known	chr16	-	3095	12	FSM	ENSMUSG00000022498.17	ENSMUST00000038424.14	3095	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_7	19.5329769897639	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATGTCATTTAGCATT	8534	False	NA	NA	False	AATAAA	-29	NA	10952514	10892774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614_10902758_10905640_10906434_10909449_10909651_10911679_10911793_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
transcript_49306.nic	chr16	-	3014	11	NIC	ENSMUSG00000022498.17	novel	3095	12	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	28.318898283655	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATGTCATTTAGCATT	8502	False	NA	NA	False	AATAAA	-29	NA	10952546	10892774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614_10902758_10905640_10906434_10909449_10909651_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
transcript_49309.nnic	chr16	-	2884	10	NIC	ENSMUSG00000022498.17	novel	3095	12	NA	NA	-32	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_7	37.1317307985874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATGTCATTTAGCATT	8502	False	NA	NA	False	AATAAA	-29	NA	10952546	10892774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614_10902758_10905640_10906434_10909449_10909651_10922429_10922524_10940533_10940632_10946350_10946568_10952131
transcript_4931.known	chr1	-	2988	10	FSM	ENSMUSG00000041605.17	ENSMUST00000120339.8	2988	10	0	0	0	0	multi-exon	TRUE	canonical	3	39	junction_9	8.93736780097342	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGAAGGATTCTGTGTGT	NA	False	NA	-13	True	AATAAA	-20	NA	136162002	136141268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155401_136161640
transcript_49313.known	chr16	-	4248	8	FSM	ENSMUSG00000022498.17	ENSMUST00000118362.8	4248	8	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	22.088874288812	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGGTCTGAGATTAATGA	8573	False	NA	NA	False	AATAAA	-14	NA	10952475	10903382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10906434_10909449_10909651_10911679_10911793_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
transcript_49316.known	chr16	-	2381	7	FSM	ENSMUSG00000022498.17	ENSMUST00000145225.8	2381	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	35.2120560162125	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGCCTGCCTTATCCTC	8611	False	NA	NA	False	NA	NA	NA	10952437	10905098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10906434_10909449_10909651_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
transcript_49318.nic	chr16	-	2300	5	ISM	ENSMUSG00000022498.17	ENSMUST00000145225.8	2381	7	-109	15985	-32	1391	5prime_fragment	FALSE	canonical	3	91	junction_1	12.3364297914753	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAACTTACAATAGTACAT	8502	False	NA	NA	False	NA	NA	NA	10952546	10921083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
transcript_49319.nic	chr16	-	1175	5	NIC	ENSMUSG00000022498.17	novel	1145	5	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	43.4798804046193	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGAACTCTTTATCTC	8502	False	NA	NA	False	TTTAAA	-6	NA	10952546	10923820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_10924136_10934658_10934789_10940533_10940632_10946350_10946568_10952131
transcript_49321.known	chr16	+	2872	2	FSM	ENSMUSG00000037972.8	ENSMUST00000089011.6	2872	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACAGTCTTCACCTCTGG	NA	False	NA	17	True	AATAAA	-33	NA	10884193	10892849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_10884312_10890095
transcript_49323.known	chr16	-	1145	5	FSM	ENSMUSG00000022498.17	ENSMUST00000147884.2	1145	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	53.399438199292	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGAACTCTTTATCTC	8534	False	NA	NA	False	TTTAAA	-6	NA	10952514	10923820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10924136_10934658_10934789_10940533_10940632_10946350_10946570_10952131
transcript_49325.known	chr16	-	3825	23	FSM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_12	24.8770530528646	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGTGTGGTCCTTTCT	NA	False	NA	1	True	AATAAA	-28	NA	10994257	10954455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
transcript_4933.known	chr1	-	6329	17	FSM	ENSMUSG00000041570.15	ENSMUST00000192001.6	6329	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_16	9.18197112552637	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCAGACACCAATTTTT	7156	False	NA	0	True	ATTAAA	-22	NA	136273436	136196897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_136198886_136199268_136199388_136201487_136201604_136202538_136202612_136204275_136204497_136204931_136205069_136208043_136210238_136210549_136210620_136211604_136211640_136213646_136213741_136215637_136215732_136220617_136220758_136221017_136221160_136225479_136225564_136232032_136232195_136252474_136252735_136273036
transcript_49339.known	chr16	-	1945	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	1155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	954	False	NA	-3	True	ATTAAA	-25	NA	11021195	11010833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
transcript_49360.known	chr16	-	764	6	FSM	ENSMUSG00000005846.13	ENSMUST00000124454.2	764	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1127.73284070297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAAGCAGAGTGTGT	1021	False	NA	NA	False	NA	NA	NA	11021128	11014307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
transcript_49369.known	chr16	-	3716	15	FSM	ENSMUSG00000062203.16	ENSMUST00000167571.8	3716	15	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_12	261.982473319363	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGTCTGCAAATATCTG	NA	False	NA	NA	False	ATTAAA	-21	NA	11072134	11037155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_11038744_11040448_11040618_11041075_11041166_11042283_11042458_11045978_11046060_11047072_11047167_11048373_11048515_11048700_11048856_11050395_11050577_11053229_11053308_11055394_11055429_11056735_11056961_11058529_11058572_11058668_11058705_11071506
transcript_49371.known	chr16	-	2898	15	FSM	ENSMUSG00000062203.16	ENSMUST00000080030.14	2898	15	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_12	224.149458156465	981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTTGTAAGTAAAGCTTA	NA	False	NA	NA	False	AATAAA	-15	NA	11072073	11037915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_11038744_11040448_11040618_11041075_11041166_11042283_11042458_11045978_11046060_11047072_11047167_11048373_11048515_11048700_11048856_11050395_11050577_11053229_11053308_11055394_11055429_11056735_11056964_11058529_11058572_11058668_11058705_11071506
transcript_49389.nic	chr16	-	1108	6	ISM	ENSMUSG00000062203.16	ENSMUST00000167571.8	3716	15	-77	16086	-22	-4466	5prime_fragment	FALSE	canonical	3	573	junction_3	267.795444322714	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGAAACTTGGTATAGTA	NA	False	NA	NA	False	AAGAAA	-5	NA	11072211	11053241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_11053308_11055394_11055429_11056735_11056961_11058529_11058572_11058668_11058705_11071506
transcript_49390.nic	chr16	-	1135	6	ISM	ENSMUSG00000088544.3_ENSMUSG00000062203.16	ENSMUST00000080030.14	2898	15	-162	15326	-46	-4466	5prime_fragment	FALSE	canonical	3	773	junction_3	188.558744162131	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGAAACTTGGTATAGTA	NA	False	NA	NA	False	AAGAAA	-5	NA	11072235	11053241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_11053308_11055394_11055429_11056735_11056964_11058529_11058572_11058668_11058705_11071506
transcript_49399.known	chr16	-	1759	1	FSM	ENSMUSG00000062203.16	ENSMUST00000229660.2	1759	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAGAAAGAAAG	NA	False	NA	NA	False	AGTAAA	-15	NA	11072189	11070430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_11070400_11072200
transcript_49400.known	chr16	+	2667	21	FSM	ENSMUSG00000071669.15	ENSMUST00000180792.8	2667	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	3.35261092284804	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGCTGGGTCTCTGTCCT	NA	False	NA	NA	False	ATTAAA	-13	NA	11140771	11573336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_11140843_11165722_11165785_11167769_11167823_11185540_11185666_11213082_11213264_11217628_11217700_11218664_11218914_11221323_11221697_11231089_11231221_11236686_11236763_11238567_11238648_11263028_11263093_11265243_11265373_11328823_11328907_11389562_11389670_11449321_11449439_11473999_11474056_11478409_11478492_11532777_11532919_11556157_11556298_11573060
transcript_49407.known	chr16	-	2663	4	FSM	ENSMUSG00000065979.13	ENSMUST00000096272.11	2663	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	6.59966329107444	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAAAAACAA	NA	False	NA	-40	True	NA	NA	NA	11727287	11621584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_11623448_11646038_11646462_11705441_11705661_11727129
transcript_49411.known	chr16	-	1922	3	FSM	ENSMUSG00000065979.13	ENSMUST00000073371.7	1922	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	40	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTACATTGCTTCTTAAAT	NA	False	NA	NA	False	AATAAA	-13	NA	11727309	11702086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_11703610_11705441_11705661_11727129
transcript_49419.known	chr16	+	3480	11	FSM	ENSMUSG00000022545.14	ENSMUST00000023206.14	3480	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	21.466252583998	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	11	True	AATAAA	-14	NA	12927547	12966598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948599_12950721_12950815_12962264_12962378_12965389
transcript_4942.known	chr1	+	2166	8	FSM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	8.75750407085377	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTATTTATTTCAGTCCT	NA	False	NA	10	True	AATAAA	-16	NA	136343008	136367896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
transcript_49421.nic	chr16	+	3878	11	NIC	ENSMUSG00000022545.14	novel	3480	11	NA	NA	-110	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	14.2270868416553	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	11	True	AATAAA	-14	NA	12927437	12966598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948887_12950721_12950815_12962264_12962378_12965389
transcript_49429.known	chr16	+	1118	4	FSM	ENSMUSG00000022545.14	ENSMUST00000138527.2	1118	4	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	5.31245915016974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTGAATCTACTGTCTT	NA	False	NA	NA	False	TATAAA	-21	NA	12927780	12941713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197
transcript_49437.known	chr16	+	5815	17	FSM	ENSMUSG00000009569.15	ENSMUST00000009713.14	5815	17	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_16	15.0082008831838	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGCATGTACAGGGTAC	NA	False	NA	NA	False	ATTAAA	-29	NA	13074344	13232927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13074419_13082942_13083004_13144245_13144436_13196127_13196194_13197703_13197760_13199391_13199468_13202057_13202220_13203469_13203649_13212686_13212825_13216087_13216351_13217943_13218044_13218516_13219549_13221018_13221175_13223112_13223272_13223628_13223767_13227480_13227542_13230023
transcript_49439.known	chr16	-	2906	24	FSM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	0	0	0	0	multi-exon	FALSE	canonical	1	121	junction_21	52.0035988284976	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13486034	13355823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
transcript_4945.nnic	chr1	+	2062	7	NIC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	-30	-5	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	23.4004985701872	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATCGTTATTTATTTCA	NA	False	NA	5	True	AATAAA	-11	NA	136342978	136367891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136367490
transcript_49456.nnic	chr16	-	1300	3	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	117828	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	188.5	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13368018	13355823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_13356767_13358918_13359113_13367855
transcript_49460.known	chr16	+	3003	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_1	10.7760126660835	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTATAGAGAAATCTGAT	NA	False	NA	NA	False	AATAAA	-24	NA	13489721	13521476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
transcript_49464.nic	chr16	+	1667	7	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	2	4323	2	0	5prime_fragment	FALSE	canonical	3	82	junction_1	11.6105794668292	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAGTGAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	13489723	13517153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736
transcript_49467.nic	chr16	+	1675	4	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	162	13783	0	1857	5prime_fragment	FALSE	canonical	3	82	junction_1	10.3708994574027	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACATTTAAGGCTGGAGA	NA	False	NA	NA	False	AAGAAA	-5	NA	13489883	13507693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619
transcript_49468.known	chr16	+	1611	2	FSM	ENSMUSG00000079737.5	ENSMUST00000035426.7	1611	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTACTTTGGTATCT	NA	False	NA	NA	False	ATTAAA	-32	NA	13489883	13496249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13489943_13494697
transcript_49469.known	chr16	+	2121	1	FSM	ENSMUSG00000022684.16	ENSMUST00000230905.2	2121	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	13489850	13491971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13489800_13492000
transcript_49473.known	chr16	-	301	2	FSM	ENSMUSG00000115907.2	ENSMUST00000229709.2	301	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCCATTAAAAATTTGAAC	NA	False	NA	NA	False	NA	NA	NA	13557068	13555715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_13555865_13556916
transcript_49474.known	chr16	-	964	4	FSM	ENSMUSG00000022683.14	ENSMUST00000115807.9	964	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.0720922897661	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTGTAAGAGGTAAAT	NA	False	NA	0	True	AATAAA	-20	NA	13548307	13532920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_13533461_13542893_13543080_13545826_13545978_13548220
transcript_4948.known	chr1	+	1364	2	FSM	ENSMUSG00000026404.13	ENSMUST00000129218.7	1364	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCACGGTATATTCTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	136343008	136345530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_136343162_136344319
transcript_49488.known	chr16	+	3582	18	FSM	ENSMUSG00000022682.9	ENSMUST00000023363.8	3582	18	0	0	0	0	multi-exon	FALSE	canonical	3	873	junction_12	92.1558406284578	879	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTACTGTGTTGAATTTTA	NA	False	NA	27	True	AATAAA	-20	NA	13598576	13632703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
transcript_49501.known	chr16	-	4228	24	FSM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_1	25.0911382243075	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTCTAGCTTCTACC	9988	False	NA	NA	False	NA	NA	NA	13720991	13651011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_13652711_13654249_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
transcript_49508.known	chr16	-	2880	23	FSM	ENSMUSG00000022680.15	ENSMUST00000115804.9	2880	23	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	45.2457020469238	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGCTTTTGTTGCTGT	9804	False	NA	-17	True	NA	NA	NA	13720885	13652023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_13652711_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
transcript_49509.known	chr16	-	3178	23	FSM	ENSMUSG00000022680.15	ENSMUST00000154150.8	3178	23	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_15	13.5268328374224	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTAACTTTTGAATAA	9843	False	NA	NA	False	NA	NA	NA	13720846	13653455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
transcript_49526.nic	chr16	-	1256	11	ISM	ENSMUSG00000022680.15	ENSMUST00000115802.2	2466	14	-4	9487	-4	801	5prime_fragment	FALSE	canonical	3	195	junction_3	12.7342059037853	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTCTGTTGCCTTTCTTA	9980	False	NA	NA	False	AATAAA	-23	NA	13720999	13676627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
transcript_49530.known	chr16	+	1175	10	FSM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	69.8729004852541	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637114	13653315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_49535.known	chr16	+	984	9	FSM	ENSMUSG00000022681.16	ENSMUST00000115805.3	984	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	226.530902969109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637188	13653312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652998
transcript_49540.known	chr16	+	1014	9	FSM	ENSMUSG00000022681.16	ENSMUST00000136618.8	1014	9	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	197.353743313878	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637169	13653312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13637301_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_4955.nic	chr1	+	2626	13	ISM	ENSMUSG00000041498.14	ENSMUST00000187963.7	4102	15	-15	8473	-15	7528	5prime_fragment	FALSE	canonical	3	50	junction_1	5.68807231552717	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCAAGAGACAAAGGAGTT	NA	False	NA	NA	False	AAAAAG	-5	NA	136394065	136415181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_136394137_136395585_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410778_136414009_136414183_136414772_136414921_136415141
transcript_49554.known	chr16	+	2315	5	FSM	ENSMUSG00000022679.14	ENSMUST00000148966.2	2315	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	78.6431815226215	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGATTTGGGTATTGTCA	521	False	NA	9	True	NA	NA	NA	13758558	13766446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13758888_13759983_13760038_13762529_13762601_13764421_13764452_13764615
transcript_49560.known	chr16	+	580	4	FSM	ENSMUSG00000022679.14	ENSMUST00000143697.8	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	74.5311269798659	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTTCGCAGGAAGGAGG	528	False	NA	NA	False	NA	NA	NA	13758565	13764743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13758888_13762529_13762601_13764392_13764452_13764615
transcript_49563.known	chr16	+	3087	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGAACTCTCAGCTCC	491	False	NA	NA	False	NA	NA	NA	13758528	13767242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
transcript_49570.known	chr16	+	2155	4	FSM	ENSMUSG00000022679.14	ENSMUST00000141971.8	2155	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	85.9353762363841	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAAGATTGATGCTGATT	456	False	NA	NA	False	NA	NA	NA	13758493	13766587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13758576_13762529_13762601_13764421_13764452_13764615
transcript_49572.known	chr16	+	2394	6	FSM	ENSMUSG00000044117.13	ENSMUST00000056521.12	2394	6	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_1	4.9152822909778	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTTTCAAGATATTTG	NA	False	NA	NA	False	NA	NA	NA	13804467	13919364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767_13913851_13917656
transcript_49575.known	chr16	-	7751	27	FSM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_23	10.0957692234429	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTAATGAGTGCTTTTGT	9816	False	NA	-6	True	AATAAA	-16	NA	13977131	13927036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944034_13944919_13945123_13946374_13946509_13946614_13946758_13947509_13947731_13949310_13949487_13950223_13950344_13950433_13950671_13954801_13954883_13956206_13956386_13958046_13958237_13959506_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
transcript_49582.nic	chr16	-	3139	10	ISM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	-16	31794	-16	0	5prime_fragment	FALSE	canonical	3	10	junction_6	4.47213595499958	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAAAAAAATTA	9800	False	NA	NA	False	NA	NA	NA	13977147	13958830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
transcript_4959.nic	chr1	+	2438	11	ISM	ENSMUSG00000041498.14	ENSMUST00000187963.7	4102	15	-15	9472	-15	6529	5prime_fragment	FALSE	canonical	3	50	junction_1	6.18384993349612	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACCATTGCTTCAAATTT	NA	False	NA	NA	False	NA	NA	NA	136394065	136414182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_136394137_136395585_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410778_136414009
transcript_49592.known	chr16	+	2287	9	FSM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	30.8696857774743	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	False	NA	96	True	AATAAA	-18	NA	13981138	14010792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
transcript_49593.known	chr16	+	1551	9	FSM	ENSMUSG00000022678.17	ENSMUST00000117958.8	1551	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	96.6681662958391	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAATCCCTGCTCAAT	NA	False	NA	-4	True	AATAAA	-9	NA	13981150	14010692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14010205
transcript_49594.known	chr16	+	2335	9	FSM	ENSMUSG00000022678.17	ENSMUST00000115795.9	2335	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	91.5818452260054	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981208	14010782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009453
transcript_49595.known	chr16	+	2105	8	FSM	ENSMUSG00000022678.17	ENSMUST00000132316.8	2105	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	103.03773828168	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981161	14010782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
transcript_49596.known	chr16	-	1465	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135239	14117107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
transcript_49605.known	chr16	-	1147	3	FSM	ENSMUSG00000022677.16	ENSMUST00000230495.2	1147	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	185.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTTGCTTATGGTCATG	NA	False	NA	-8	True	NA	NA	NA	14135208	14117111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_14118074_14122317_14122452_14135157
transcript_49608.known	chr16	-	807	2	FSM	ENSMUSG00000022677.16	ENSMUST00000148278.2	807	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGTCCAGCCCACAGTGG	NA	False	NA	NA	False	NA	NA	NA	14135196	14117305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_14118074_14135157
transcript_49609.nic	chr16	-	1355	2	ISM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	-24	13521	6	20	5prime_fragment	FALSE	canonical	3	312	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACCGTGTCAGTTAGG	NA	False	NA	NA	False	AAAAAG	-12	NA	14135263	14130628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_14131878_14135157
transcript_49610.known	chr16	-	1414	5	FSM	ENSMUSG00000022677.16	ENSMUST00000120707.2	1414	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	160.526282894733	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135211	14117107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_14118074_14122317_14122429_14128910_14128996_14131679_14131878_14135157
transcript_49613.known	chr16	+	6792	31	FSM	ENSMUSG00000023088.18	ENSMUST00000100167.10	6792	31	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_2	17.5139626837814	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGACTGAAGAGATGACT	7158	False	NA	NA	False	AAAAAG	-4	NA	14179423	14293601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_14179508_14207670_14207848_14209181_14209308_14211816_14211955_14214214_14214341_14221853_14221916_14222877_14223010_14228563_14228798_14229312_14229491_14231084_14231247_14237563_14237657_14240920_14241125_14254370_14254518_14255509_14255598_14257850_14257924_14261211_14261339_14263156_14263334_14265341_14265510_14266263_14266448_14275751_14275834_14276860_14276994_14277620_14277832_14278761_14279073_14282906_14283107_14283967_14284095_14284860_14284963_14285686_14285834_14288333_14288493_14289801_14289969_14290674_14290870_14291323
transcript_49616.nic	chr16	+	4693	31	NIC	ENSMUSG00000023088.18	novel	6792	31	NA	NA	1	-229	combination_of_known_junctions	FALSE	canonical	3	25	junction_20	25.3100770445291	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAACGAAACCAAACTA	7166	False	NA	NA	False	NA	NA	NA	14179431	14291537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_14179508_14207670_14207848_14209181_14209308_14211816_14211955_14214214_14214341_14221853_14221916_14222877_14223010_14228563_14228798_14229312_14229491_14231084_14231247_14237563_14237657_14240920_14241125_14254370_14254518_14255509_14255598_14257850_14257924_14261211_14261339_14263156_14263334_14265341_14265510_14266263_14266448_14275751_14275834_14276887_14276994_14277620_14277832_14278761_14279073_14282906_14283107_14283967_14284095_14284860_14284963_14285686_14285834_14288333_14288493_14289801_14289969_14290674_14290870_14291323
transcript_49627.known	chr16	+	2803	1	FSM	ENSMUSG00000023088.18	ENSMUST00000230780.2	2803	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACTTAAAAAAAAAAAAGTAT	7165	False	NA	NA	False	NA	NA	NA	14179430	14182233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_14179400_14182200
transcript_49628.known	chr16	-	609	5	FSM	ENSMUSG00000022674.16	ENSMUST00000096234.4	609	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	568.153808400507	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAGTAAAAGAATTGCA	NA	False	NA	NA	False	ATTAAA	-24	NA	15412354	15374172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15411554_15411623_15412323
transcript_49630.known	chr16	-	4207	4	FSM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	627.165050046636	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTTGTGTGTGCCTGTG	NA	False	NA	-4	True	AATAAA	-17	NA	15412388	15370540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15412323
transcript_49634.known	chr16	-	893	4	FSM	ENSMUSG00000022674.16	ENSMUST00000118236.8	893	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	50.6776303927307	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTGTTGGGGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	15412336	15373744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15374408_15398922_15399072_15411554_15411623_15412323
transcript_49637.known	chr16	-	1236	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	698.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAGACTATCAAAGACTT	NA	False	NA	NA	False	AAGAAA	-4	NA	15412371	15373368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15374408_15398922_15399072_15412323
transcript_49639.known	chr16	-	2469	1	FSM	ENSMUSG00000022674.16	ENSMUST00000229244.2	2469	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAGAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	15412354	15409885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15409900_15412400
transcript_49643.nnic	chr16	-	4168	17	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	2	1499	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	379.752833885081	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGACTAAATAGGCTCTA	NA	False	NA	NA	False	NA	NA	NA	15455262	15440261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_15440375_15441292_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
transcript_49647.known	chr16	-	3589	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	0	0	0	0	multi-exon	FALSE	canonical	3	1276	junction_6	130.715909088714	1413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAGTAGGCATTAATG	NA	False	NA	NA	False	AATAAA	-20	NA	15455264	15441760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
transcript_49669.nic	chr16	-	2086	12	ISM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	16	4739	16	3157	5prime_fragment	FALSE	canonical	3	1276	junction_2	108.941185132996	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACCATTGAAAATATCCAA	NA	False	NA	NA	False	NA	NA	NA	15455248	15446499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
transcript_49682.known	chr16	-	758	4	FSM	ENSMUSG00000022671.14	ENSMUST00000117136.2	758	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	237.265439727089	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAGTTCTATGTGGAG	NA	False	NA	-11	True	ATTAAA	-13	NA	15681233	15666313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15666594_15680261_15680408_15680611_15680797_15681086
transcript_49683.known	chr16	-	1066	4	FSM	ENSMUSG00000022671.14	ENSMUST00000229680.2	1066	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	282.609664063744	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTATGTGGAGTCCT	NA	False	NA	-7	True	ATTAAA	-17	NA	15681174	15666309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15666594_15678561_15678635_15680261_15680408_15680611
transcript_49685.known	chr16	-	1035	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	21	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGAGTCCTGGTTT	NA	False	NA	-2	True	ATTAAA	-22	NA	15681211	15666304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15666594_15680261_15680408_15680611
transcript_49695.known	chr16	-	3282	20	FSM	ENSMUSG00000041974.11	ENSMUST00000040248.9	3282	20	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_3	29.6569490345649	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	1947	False	NA	0	True	AATAAA	-18	NA	15964715	15707087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
transcript_49697.nnic	chr16	-	3216	19	NIC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_17	72.4806487584407	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	1946	False	NA	0	True	AATAAA	-18	NA	15964716	15707087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15958571_15958728_15964608
transcript_49698.nnic	chr16	-	3182	19	NIC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	2	17	junction_13	71.3702958926364	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	1946	False	NA	0	True	AATAAA	-18	NA	15964716	15707087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
transcript_4970.nnic	chr1	+	3461	5	NNC	ENSMUSG00000041483.15	novel	4933	2	NA	NA	-58272	-1777	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_3	44.3867942072865	151	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAGTACAGAAAAAA	NA	False	NA	NA	False	TTTAAA	-28	NA	136494366	136556014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_136494541_136551065_136551108_136552021_136552071_136552598_136552790_136553009
transcript_49714.known	chr16	+	2918	13	FSM	ENSMUSG00000041957.16	ENSMUST00000039408.3	2918	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	18.1995115929583	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGTGACCTTCGATT	NA	False	NA	19	True	AATAAA	-19	NA	16031181	16090576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16031460_16043164_16043278_16043583_16044156_16048504_16048641_16058363_16058572_16064729_16064908_16078189_16078308_16079467_16079633_16080428_16080603_16085040_16085195_16086381_16086572_16087548_16087637_16090032
transcript_49719.known	chr16	+	1959	3	FSM	ENSMUSG00000041957.16	ENSMUST00000162150.8	1959	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	10.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAATAAAAGAAATC	NA	False	NA	NA	False	NA	NA	NA	16031181	16045151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16031460_16043164_16043278_16043583
transcript_49720.known	chr16	+	2931	6	FSM	ENSMUSG00000041957.16	ENSMUST00000161342.8	2931	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	18.7232475815495	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	16031181	16066353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16031460_16043164_16043278_16043583_16044156_16048504_16048641_16058363_16058572_16064729
transcript_49722.known	chr16	+	1574	5	FSM	ENSMUSG00000022792.17	ENSMUST00000059955.15	1574	5	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	32.9952648117878	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGAACAATCCTTGCT	9519	False	NA	24	True	AATAAA	-29	NA	16120841	16127504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
transcript_49723.known	chr16	+	1528	5	FSM	ENSMUSG00000022792.17	ENSMUST00000159683.2	1528	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	137.095769446034	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCTTTACACAAGAACAA	9522	False	NA	16	True	AATAAA	-21	NA	16120844	16127496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16121612_16122399_16122568_16124361_16124483_16125073_16125245_16127195
transcript_49725.known	chr16	+	1412	4	FSM	ENSMUSG00000022792.17	ENSMUST00000161191.8	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	36.8088153692684	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAGTAGAAAATACCTTG	9515	False	NA	NA	False	AATAAA	-17	NA	16120837	16125387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073
transcript_49728.known	chr16	+	2805	4	FSM	ENSMUSG00000022792.17	ENSMUST00000159962.8	2805	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	149.404001136367	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGATATATTTCTGTT	9506	False	NA	NA	False	GATAAA	-20	NA	16120828	16126806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16121612_16122399_16122568_16124361_16124483_16125073
transcript_49734.nic	chr16	-	4137	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-83	0	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176906	16130101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_49737.nic	chr16	-	2992	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-83	0	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176906	16131246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_49746.known	chr16	-	2151	19	FSM	ENSMUSG00000022789.16	ENSMUST00000230980.2	2151	19	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_17	350.006349148761	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACTGTTTGATATCCA	NA	False	NA	NA	False	NA	NA	NA	16176729	16131850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163843_16164010_16176627
transcript_49748.nnic	chr16	-	4104	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-83	0	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176906	16130101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_49753.nnic	chr16	-	2959	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-83	0	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176906	16131246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_49760.known	chr16	-	3951	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176823	16130093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_49779.nic	chr16	-	431	4	ISM	ENSMUSG00000022789.16	ENSMUST00000230038.2	1074	6	-14	4550	-6	-4550	5prime_fragment	FALSE	canonical	3	1030	junction_2	136.04656065725	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAAATGAAACTGAAAGA	NA	False	NA	NA	False	NA	NA	NA	16176829	16158897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_16158932_16159285_16159333_16163861_16164010_16176627
transcript_4978.nnic	chr1	+	3989	4	NNC	ENSMUSG00000041483.15	novel	4933	2	NA	NA	-58272	-1777	intron_retention	FALSE	canonical	3	42	junction_2	46.0506967012082	134	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAGTACAGAAAAAA	NA	False	NA	NA	False	TTTAAA	-28	NA	136494366	136556014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_136494541_136551065_136551108_136552021_136552790_136553009
transcript_49780.nic	chr16	-	409	2	ISM	ENSMUSG00000022789.16	ENSMUST00000230038.2	1074	6	-91	9532	-83	-9532	5prime_fragment	FALSE	canonical	3	1358	junction_1	0	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAGGAGAAGAAAATGGT	NA	False	NA	NA	False	GATAAA	-8	NA	16176906	16163879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_16164010_16176627
transcript_49782.known	chr16	-	2637	17	FSM	ENSMUSG00000022788.17	ENSMUST00000069284.14	2637	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_7	4.02919036532155	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATCTCCCTGGACCCAA	NA	False	NA	NA	False	NA	NA	NA	16345275	16240465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16240685_16241779_16241921_16243630_16243772_16253804_16253931_16254396_16254490_16254873_16254905_16271855_16272029_16279457_16279605_16279864_16279924_16287567_16287707_16292090_16292248_16292879_16293026_16295287_16295378_16301953_16302462_16308286_16308471_16321960_16322081_16345112
transcript_49783.known	chr16	-	2714	17	FSM	ENSMUSG00000022788.17	ENSMUST00000162671.8	2714	17	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_7	4.09219913371771	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCAGCAGCTGCTAGTGT	NA	False	NA	NA	False	AAAAAG	-13	NA	16417842	16240426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16240685_16241779_16241921_16243630_16243772_16253804_16253931_16254396_16254490_16254873_16254905_16271855_16272029_16279457_16279605_16279864_16279924_16287567_16287707_16292090_16292248_16292879_16293026_16295287_16295378_16301953_16302462_16308286_16308471_16321960_16322081_16417641
transcript_49785.known	chr16	-	2672	4	FSM	ENSMUSG00000022788.17	ENSMUST00000162414.8	2672	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	3.85861230093008	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAATAAAAACAAATAGA	NA	False	NA	NA	False	NA	NA	NA	16417903	16300355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16302462_16308286_16308471_16321960_16322081_16417641
transcript_49787.known	chr16	-	2416	11	FSM	ENSMUSG00000022783.12	ENSMUST00000023468.6	2416	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.24722050542442	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAATGGTCCCTTTTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	16647177	16570879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16571742_16580885_16581032_16584832_16584950_16595186_16595379_16598484_16598638_16599608_16599783_16601598_16601805_16605078_16605263_16610360_16610528_16646883_16646980_16647058
transcript_49789.known	chr16	-	870	3	FSM	ENSMUSG00000075370.13	ENSMUST00000100136.4	870	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGAGTCTTGTCGATCTC	NA	False	NA	NA	False	AATAAA	-16	NA	16681849	16678534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16678999_16680292_16680409_16681559
transcript_49791.known	chr16	+	2950	19	FSM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	102.489023802552	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGCCTGGGACCTTT	NA	False	NA	NA	False	ATTAAA	-27	NA	16688620	16710849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
transcript_49799.nic	chr16	+	2915	18	NIC	ENSMUSG00000022779.17	novel	3073	18	NA	NA	-23	0	combination_of_known_junctions	TRUE	canonical	3	287	junction_1	39.4304608859032	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688576	16710854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
transcript_49806.known	chr16	+	3073	18	FSM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	94.325542449951	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688644	16710854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16688920_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
transcript_49821.nic	chr16	+	1144	9	ISM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	-29	8642	-8	817	5prime_fragment	FALSE	canonical	3	71	junction_1	141.245741086236	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTTGGGTATGCTTTCT	NA	False	NA	NA	False	TTTAAA	-20	NA	16688591	16702207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102
transcript_49825.nic	chr16	+	1075	8	ISM	ENSMUSG00000022779.17	ENSMUST00000232080.2	1076	9	-23	1506	-23	817	5prime_fragment	TRUE	canonical	3	287	junction_1	54.0275817692846	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTTGGGTATGCTTTCT	NA	False	NA	NA	False	TTTAAA	-20	NA	16688576	16702207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102
transcript_49828.known	chr16	+	3508	6	FSM	ENSMUSG00000022779.17	ENSMUST00000232531.2	3508	6	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_1	63.4457248362725	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGGAAAGCTTTACAA	NA	False	NA	NA	False	NA	NA	NA	16688649	16703329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364
transcript_4983.nnic	chr1	+	3412	4	NNC	ENSMUSG00000041483.15	novel	4933	2	NA	NA	-58272	-1777	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	57.5577005177317	133	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAGTACAGAAAAAA	NA	False	NA	NA	False	TTTAAA	-28	NA	136494366	136556014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_136494541_136551065_136551108_136552598_136552790_136553009
transcript_49834.known	chr16	+	599	3	FSM	ENSMUSG00000022779.17	ENSMUST00000231576.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_1	82	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGATCCTGCAGAGCTCT	NA	False	NA	NA	False	NA	NA	NA	16688663	16697204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16688694_16695695_16695881_16696820
transcript_49835.known	chr16	-	415	2	FSM	ENSMUSG00000059305.13	ENSMUST00000232670.2	415	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAACTGCAGCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	16688707	16686583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16686843_16688551
transcript_49836.known	chr16	-	766	2	FSM	ENSMUSG00000059305.13	ENSMUST00000075017.5	766	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGGTCTGGCTGGTTTG	NA	False	NA	-1	True	ATTAAA	-14	NA	16687119	16686266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16686843_16686929
transcript_49837.known	chr16	+	1076	9	FSM	ENSMUSG00000022779.17	ENSMUST00000232080.2	1076	9	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_1	50.5667875190821	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAAAGAAAAAGCCAAGCA	NA	False	NA	NA	False	NA	NA	NA	16688599	16703713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698
transcript_49840.known	chr16	+	4922	8	FSM	ENSMUSG00000026181.14	ENSMUST00000027373.12	4922	8	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	6.62093155786084	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGTGCCACTTGGATCT	NA	False	NA	35	True	AATAAA	-17	NA	16714332	16745228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16714489_16721187_16721456_16728802_16728946_16731897_16732101_16733023_16733213_16735523_16735668_16740326_16740421_16741503
transcript_49843.known	chr16	+	2390	9	FSM	ENSMUSG00000063358.18	ENSMUST00000232611.2	2390	9	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_8	172.340097989412	1043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGCTCTGTTGCCAA	NA	False	NA	NA	False	AATAAA	-23	NA	16801245	16862613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177_16856299_16861549
transcript_49845.known	chr16	+	1747	8	FSM	ENSMUSG00000063358.18	ENSMUST00000115731.10	1747	8	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_5	32.3728281124773	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACATTTAAAAATA	NA	False	NA	NA	False	AATATA	-5	NA	16801430	16856904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177
transcript_49851.known	chr16	-	2333	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	False	NA	NA	False	AATAAA	-19	NA	16929121	16904418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
transcript_49854.known	chr16	-	2190	21	FSM	ENSMUSG00000022771.18	ENSMUST00000164458.10	2190	21	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	166.780814244325	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCGTTCATGACCTGGT	NA	False	NA	NA	False	AATAAA	-18	NA	16929077	16904419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16904980_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
transcript_49884.known	chr16	-	3088	20	FSM	ENSMUSG00000022771.18	ENSMUST00000231712.2	3088	20	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_7	49.1072657119735	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAAT	NA	False	NA	NA	False	AGTAAA	-40	NA	16929106	16905179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
transcript_4991.known	chr1	-	1756	9	FSM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	13.3041346956501	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCACCCCTGGAAGCTT	NA	False	NA	NA	False	NA	NA	NA	136881368	136773200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136881231
transcript_49920.known	chr16	+	3322	5	FSM	ENSMUSG00000022773.20	ENSMUST00000035682.16	3322	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	19.0705925445435	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTCTTTACTGTCTAAA	NA	False	NA	NA	False	NA	NA	NA	16887559	16904600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16888228_16895638_16895919_16899461_16899506_16899931_16900041_16902379
transcript_49925.known	chr16	+	2185	4	FSM	ENSMUSG00000022773.20	ENSMUST00000231518.2	2185	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	19.6694913225759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGATTTTGCGTTGGC	NA	False	NA	NA	False	TATAAA	-20	NA	16888021	16904205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16888228_16899461_16899506_16899931_16900041_16902379
transcript_49926.known	chr16	-	935	2	FSM	ENSMUSG00000022771.18	ENSMUST00000231536.2	935	2	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTATGTGAATCCAGGT	NA	False	NA	NA	False	NA	NA	NA	16929096	16926713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16927559_16929006
transcript_49927.known	chr16	-	1266	8	FSM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_7	117.062516003464	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16942970	16931261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942853
transcript_49929.known	chr16	-	1156	7	FSM	ENSMUSG00000049916.13	ENSMUST00000231681.2	1156	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_4	26.8824602048746	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16943004	16931262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942853
transcript_49930.nnic	chr16	-	1142	7	NNC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_6	94.3705756873166	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16943014	16931261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942878
transcript_49933.nic	chr16	-	1370	6	NIC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	3	0	intron_retention	FALSE	canonical	3	255	junction_4	29.3011945148999	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16943001	16931261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16939416_16942853
transcript_49937.known	chr16	-	1108	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	0	0	0	0	multi-exon	FALSE	canonical	2	125	junction_1	37.5	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGTGCATGAGATGTG	NA	False	NA	-10	True	AATAAA	-18	NA	16950247	16948001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16948653_16949460_16949658_16949987
transcript_49938.known	chr16	+	1297	5	FSM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	15.4171171105366	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964842	16966710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16966019
transcript_49950.known	chr16	-	2609	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	0	0	0	0	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	-1	True	AATAAA	-18	NA	17019356	16969878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
transcript_49955.known	chr16	+	1580	3	FSM	ENSMUSG00000041774.17	ENSMUST00000232344.2	1580	3	0	0	0	0	multi-exon	TRUE	canonical	3	101	junction_2	5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964839	16966710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_16965011_16965096_16965257_16965461
transcript_49957.known	chr16	-	650	3	FSM	ENSMUSG00000038965.18	ENSMUST00000231643.2	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1084	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATTTACTCAAAGTTGC	NA	False	NA	50	True	NA	NA	NA	17019334	16971719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16972147_16977853_16978041_17019298
transcript_4996.nnic	chr1	-	3423	9	NNC	ENSMUSG00000026398.15	novel	4733	9	NA	NA	432	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_8	15.8646619882051	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAATACTGG	NA	False	NA	NA	False	NA	NA	NA	136880936	136772013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136880319
transcript_49961.known	chr16	-	454	2	FSM	ENSMUSG00000038965.18	ENSMUST00000232594.2	454	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGCTTGCTTTGTTTTA	NA	False	NA	-19	True	ATTAAA	-17	NA	16994371	16971788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_16972147_16994275
transcript_49962.known	chr16	+	5380	1	FSM	ENSMUSG00000071636.9	ENSMUST00000169803.5	5380	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCGGGAGTTAAAGCATG	44	False	NA	NA	False	ATTAAA	-20	NA	17026466	17031846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17026500_17031800
transcript_49963.known	chr16	-	6630	55	FSM	ENSMUSG00000041720.15	ENSMUST00000232232.2	6630	55	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_39	24.3659232686811	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTTGTTTTGTTATGT	NA	False	NA	-24	True	AATAAA	-15	NA	17223757	17098215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17098485_17098580_17098665_17098883_17098974_17099712_17099873_17100149_17100271_17100480_17100607_17100686_17100792_17101163_17101274_17102310_17102382_17102459_17102533_17103070_17103142_17104515_17104646_17108978_17109100_17110743_17110798_17111706_17111875_17113235_17113327_17114759_17114954_17115073_17115154_17115414_17115535_17117305_17117434_17118856_17118965_17120854_17121007_17121148_17121308_17125566_17125695_17125929_17126087_17127169_17127263_17130215_17130336_17133412_17133503_17134825_17134910_17135157_17135240_17136143_17136269_17136346_17136418_17140851_17140935_17142976_17143111_17143257_17143395_17143804_17143914_17166578_17166630_17168625_17168795_17170601_17170706_17171913_17172098_17172734_17172831_17173947_17174081_17175409_17175540_17176150_17176252_17176758_17176951_17178360_17178458_17181810_17181877_17185267_17185417_17191213_17191281_17194781_17195042_17196305_17196379_17199664_17199754_17204099_17204194_17207204_17207322_17223497
transcript_49968.known	chr16	-	3855	8	FSM	ENSMUSG00000041720.15	ENSMUST00000231419.2	3855	8	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	18.7442508192648	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17223757	17182521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17185417_17191213_17191281_17194781_17195042_17196305_17196379_17199664_17199754_17204099_17204194_17207204_17207322_17223497
transcript_49978.known	chr16	+	6354	3	FSM	ENSMUSG00000050240.17	ENSMUST00000090190.14	6354	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	2.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAGTCTGTGACTATAC	6311	False	NA	17	True	ATTAAA	-19	NA	17051435	17081294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17051595_17072831_17072931_17075198
transcript_49981.nnic	chr16	+	4496	3	NNC	ENSMUSG00000050240.17	novel	6354	3	NA	NA	19452	18	intron_retention	FALSE	canonical	3	13	junction_1	33.5	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTCATACCCAAATTCACAA	636	False	NA	NA	False	NA	NA	NA	17070979	17079477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_17071098_17072831_17072931_17075198
transcript_49982.known	chr16	+	1627	8	FSM	ENSMUSG00000055692.22	ENSMUST00000232092.2	1627	8	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_2	39.2189042297154	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
transcript_49983.known	chr16	+	3447	5	FSM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	7.59522876548166	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCTTGACTAAGCCCCT	1384	False	NA	NA	False	AGTAAA	-15	NA	17223849	17248691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17224224_17237127_17237325_17240329_17240416_17244900_17245006_17246006
transcript_49988.known	chr16	+	5042	3	FSM	ENSMUSG00000006134.5	ENSMUST00000006293.5	5042	3	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	8	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGGTGTTTCAGTGTCTC	3459	False	NA	20	True	AATAAA	-27	NA	17269850	17305298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17270653_17286756_17287223_17301524
transcript_49994.known	chr16	+	2688	21	FSM	ENSMUSG00000022763.19	ENSMUST00000023448.15	2688	21	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	2.45916652547159	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCCTAGTGTAATTGG	4248	False	NA	NA	False	ATTAAA	-19	NA	17307526	17325349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17307756_17309156_17309348_17309784_17309968_17317411_17317626_17317864_17317975_17318152_17318263_17318353_17318399_17318610_17318708_17318789_17318903_17319316_17319404_17319954_17320047_17320129_17320261_17320359_17320476_17320576_17320649_17320757_17320822_17321329_17321407_17321507_17321626_17322781_17322881_17323547_17323624_17324093_17324199_17324990
transcript_5.known	ERCC-00013	+	792	1	FSM	ERCC-00013A	EF011062	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00013_+_0_800
transcript_50.known	ERCC-00148	+	478	1	FSM	ERCC-00148A	DQ883642	478	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00148_+_0_500
transcript_50001.nic	chr16	+	3181	21	NIC	ENSMUSG00000022761.13	novel	3394	21	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	28.3575386802169	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	32	True	NA	NA	NA	17326818	17344197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337196_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
transcript_50002.known	chr16	+	3394	21	FSM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	0	0	0	0	multi-exon	FALSE	canonical	2	77	junction_5	14.8690113995518	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	32	True	NA	NA	NA	17326551	17344197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
transcript_50034.known	chr16	+	469	3	FSM	ENSMUSG00000022761.13	ENSMUST00000231538.2	469	3	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTTCACTTCTCATGGC	NA	False	NA	NA	False	NA	NA	NA	17326836	17330089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17327083_17327489_17327553_17329929
transcript_50035.known	chr16	-	1120	5	FSM	ENSMUSG00000022760.18	ENSMUST00000232114.2	1120	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	44.5329933869261	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGACTACATGCCCAGGC	7210	False	NA	-107	True	NA	NA	NA	17348976	17346049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348541_17348722_17348888
transcript_50036.known	chr16	-	1110	5	FSM	ENSMUSG00000022760.18	ENSMUST00000231548.2	1110	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	41.2757495389242	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7275	False	NA	1	True	AATAAA	-19	NA	17348911	17345941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348841
transcript_50037.known	chr16	-	1248	5	FSM	ENSMUSG00000022760.18	ENSMUST00000100125.12	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	27.8118679703468	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAATCTCTGTTTGCAGT	7186	False	NA	97	True	NA	NA	NA	17349000	17345845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348888
transcript_50038.known	chr16	-	734	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231288.2	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	13.0724477007517	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCCTCTAGGTGCTCAGG	7267	False	NA	NA	False	NA	NA	NA	17348919	17346445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641
transcript_50041.nnic	chr16	-	1082	3	NIC	ENSMUSG00000022760.18	novel	734	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	9	junction_2	46	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7267	False	NA	1	True	AATAAA	-19	NA	17348919	17345941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_17346605_17346798_17346940_17348641
transcript_50044.known	chr16	-	766	2	FSM	ENSMUSG00000022760.18	ENSMUST00000232041.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTCTGAAGGACCAT	7270	False	NA	NA	False	NA	NA	NA	17348916	17346113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17346605_17348641
transcript_50046.known	chr16	+	337	1	FSM	ENSMUSG00000116898.2	ENSMUST00000231565.2	337	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGAACATTTTCTTTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	17349045	17349382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17349000_17349400
transcript_50047.known	chr16	-	1711	6	FSM	ENSMUSG00000022756.18	ENSMUST00000231615.2	1711	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	6.22896460095897	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACACTGTGGTATTCTTC	NA	False	NA	NA	False	NA	NA	NA	17394562	17390813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17392866_17393480_17393830_17394503
transcript_50048.nic	chr16	-	2421	6	NIC	ENSMUSG00000022756.18	novel	1920	7	NA	NA	-2	0	intron_retention	FALSE	canonical	1	1	junction_4	6.71118469422501	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCATGTACACTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	17394537	17390819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17393833_17393944_17394068_17394503
transcript_50049.known	chr16	-	3281	5	FSM	ENSMUSG00000022756.18	ENSMUST00000172164.10	3281	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_4	5.33853912601566	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGGCTTTGGCAAGCT	NA	False	NA	NA	False	NA	NA	NA	17394585	17389881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17393830_17394503
transcript_50052.known	chr16	-	2577	4	FSM	ENSMUSG00000022756.18	ENSMUST00000232429.2	2577	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	6.59966329107444	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCATGTACACTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	17394535	17390819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17391317_17391419_17392451_17392815_17393833_17394503
transcript_50059.known	chr16	+	3046	19	FSM	ENSMUSG00000005899.15	ENSMUST00000165363.10	3046	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	65.2123075939534	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAAATACCAAC	NA	False	NA	NA	False	NA	NA	NA	17437223	17461211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457707_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
transcript_50061.known	chr16	+	409	5	FSM	ENSMUSG00000041617.11	ENSMUST00000182344.8	409	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.26917420765551	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGCAGAAAAGGCTGCAAG	NA	False	NA	NA	False	NA	NA	NA	17464481	17468311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17468012_17468070_17468230
transcript_50063.known	chr16	+	1040	4	FSM	ENSMUSG00000041617.11	ENSMUST00000182822.8	1040	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.88561808316413	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCCTGGGCTGGGCTGG	NA	False	NA	NA	False	AAAACA	-19	NA	17464333	17467279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17466658
transcript_50064.known	chr16	+	685	3	FSM	ENSMUSG00000041617.11	ENSMUST00000183101.2	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCACTCACTTCCTCTGGG	NA	False	NA	NA	False	AATAAA	-13	NA	17464414	17466337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17464648_17465471_17465517_17465930
transcript_50070.known	chr16	-	3404	18	FSM	ENSMUSG00000012114.18	ENSMUST00000232236.2	3404	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	67.9646254416125	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCAGGAGTTTATTGCA	NA	False	NA	-23	True	AATAAA	-16	NA	17540811	17469084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17470128_17470568_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
transcript_50075.nic	chr16	-	3187	17	NIC	ENSMUSG00000012114.18	novel	3410	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_13	54.6468420290688	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCAGGAGTTTATTGCA	NA	False	NA	-23	True	AATAAA	-16	NA	17540811	17469084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17501022_17501053_17503316_17503369_17515470_17515559_17540619
transcript_50076.known	chr16	-	3230	17	FSM	ENSMUSG00000012114.18	ENSMUST00000080936.14	3230	17	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_9	64.8068946467118	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCAGGAGTTTATTGCA	NA	False	NA	-23	True	AATAAA	-16	NA	17540761	17469084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
transcript_50084.known	chr16	-	1189	4	FSM	ENSMUSG00000012114.18	ENSMUST00000232667.2	1189	4	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	17.4419672692682	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATCGCA	NA	False	NA	NA	False	NA	NA	NA	17540754	17500138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17501053_17503316_17503369_17515470_17515559_17540619
transcript_50088.nnic	chr16	+	3143	7	NNC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	149.069335098358	305	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	NA	False	NA	19	True	AATAAA	-28	NA	17577507	17611246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_17578119_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
transcript_50089.nic	chr16	+	3239	7	NIC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	164.993350034344	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	NA	False	NA	19	True	AATAAA	-28	NA	17577507	17611246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_17578215_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
transcript_50102.known	chr16	+	2544	7	FSM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	179.822520527572	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTGTTACATCTAATG	NA	False	NA	1	True	AATAAA	-10	NA	17577540	17611228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
transcript_50103.known	chr16	+	3266	4	FSM	ENSMUSG00000022750.19	ENSMUST00000144116.2	3266	4	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	142.007824510561	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAGAGAAAAAA	NA	False	NA	NA	False	TTTAAA	-14	NA	17577526	17597070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265
transcript_50104.known	chr16	+	3308	11	FSM	ENSMUSG00000012017.5	ENSMUST00000012161.5	3308	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.53968501984006	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGTGCTCTAATTACT	NA	False	NA	NA	False	AATAAA	-14	NA	17615145	17626157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17615392_17620230_17620290_17620379_17620482_17620643_17621164_17621245_17621465_17621600_17621730_17622169_17622274_17622349_17622468_17622672_17622789_17624212_17624366_17624615
transcript_50114.known	chr16	-	4003	10	FSM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_7	73.3575717518876	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	-2	True	AATAAA	-18	NA	17709524	17658218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
transcript_50116.known	chr16	-	2987	10	FSM	ENSMUSG00000003166.21	ENSMUST00000117082.2	2987	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	162.324853379547	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGACTCCTGTGCAGGT	NA	False	NA	NA	False	NA	NA	NA	17709457	17659173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677388_17690426_17690550_17709249
transcript_50120.nnic	chr16	-	4116	10	NNC	ENSMUSG00000003166.21	novel	4045	10	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	172.23741868439	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	-2	True	AATAAA	-18	NA	17709570	17658218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_17660642_17661835_17662073_17662846_17663058_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
transcript_50135.known	chr16	-	5703	9	FSM	ENSMUSG00000003166.21	ENSMUST00000135229.8	5703	9	0	0	0	0	multi-exon	TRUE	canonical	3	328	junction_2	56.0178542966437	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGCTGAGTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	17709518	17657345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17677391_17690426_17690550_17709249
transcript_50140.nic	chr16	-	1444	7	ISM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	-49	9031	-16	-75	5prime_fragment	FALSE	canonical	3	236	junction_4	83.6932228770977	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCTGACTGTTTACAGT	NA	False	NA	-6	True	AATAAA	-13	NA	17709573	17667249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
transcript_50141.known	chr16	-	1468	7	FSM	ENSMUSG00000003166.21	ENSMUST00000155611.8	1468	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	165.862392763801	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTACGTGTGCATTTG	NA	False	NA	69	True	NA	NA	NA	17709513	17667174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
transcript_50153.known	chr16	-	2785	10	FSM	ENSMUSG00000003527.10	ENSMUST00000232423.2	2785	10	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_7	33.1126025018337	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTTTCTATCAATTGT	NA	False	NA	0	True	NA	NA	NA	17729179	17718572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134_17724238_17724972_17725107_17725383_17725502_17725613_17725784_17727768_17727865_17727951_17728121_17729025
transcript_50155.known	chr16	-	2821	10	FSM	ENSMUSG00000003527.10	ENSMUST00000003621.10	2821	10	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_7	18.4397584408805	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTTTCTATCAATTGT	NA	False	NA	0	True	NA	NA	NA	17729212	17718572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134_17724238_17724972_17725107_17725383_17725502_17725613_17725787_17727768_17727865_17727951_17728121_17729025
transcript_50173.known	chr16	-	725	3	FSM	ENSMUSG00000022738.8	ENSMUST00000232493.2	725	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCTGAACAGGAACTAACG	NA	False	NA	NA	False	NA	NA	NA	17732923	17731417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17731583_17732229_17732484_17732617
transcript_50174.known	chr16	+	1166	1	FSM	ENSMUSG00000103149.2	ENSMUST00000193194.2	1166	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAAACTATGATTTGCC	NA	False	NA	NA	False	ATTAAA	-16	NA	17739906	17741072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17739900_17741100
transcript_50176.known	chr16	-	1666	9	FSM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	0	0	0	0	multi-exon	FALSE	canonical	3	1593	junction_8	124.030175259894	566	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGTCCATCCCTTTG	NA	False	NA	-21	True	AATAAA	-16	NA	17746083	17743086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408_17745517_17745849
transcript_5018.known	chr1	-	3446	7	FSM	ENSMUSG00000026398.15	ENSMUST00000168126.7	3446	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	7.84042232422605	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAATACTGG	NA	False	NA	NA	False	NA	NA	NA	136877300	136772013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459
transcript_50184.known	chr16	+	759	2	FSM	ENSMUSG00000059280.5	ENSMUST00000075371.5	759	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGGTCTGGCTGGTTTG	975	False	NA	NA	False	ATTAAA	-14	NA	17798291	17799137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17798475_17798561
transcript_50185.known	chr16	-	2386	14	FSM	ENSMUSG00000003526.13	ENSMUST00000003620.13	2386	14	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	13.1900087703135	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTCTCTTGGTACCT	7943	False	NA	0	True	AATAAA	-20	NA	17907156	17889588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17906751
transcript_5019.known	chr1	-	5258	10	FSM	ENSMUSG00000026393.11	ENSMUST00000186017.7	5258	10	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_1	7.19739321808962	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	138547487	138410612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_138414849_138426313_138426428_138430308_138430404_138443362_138443471_138444265_138444375_138460474_138460586_138462101_138462165_138471940_138472082_138489440_138489524_138547289
transcript_50190.nic	chr16	-	2685	13	NIC	ENSMUSG00000003526.13	novel	2386	14	NA	NA	-31	0	intron_retention	FALSE	canonical	3	102	junction_5	12.5063872570068	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCTTTCTCTTGGTACC	8041	False	NA	-1	True	AATAAA	-19	NA	17907058	17889589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898940_17899394_17899430_17902410_17902620_17906751
transcript_50198.nic	chr16	-	3020	12	NIC	ENSMUSG00000003526.13	novel	2386	14	NA	NA	-57	0	intron_retention	FALSE	canonical	3	102	junction_5	11.3705433554579	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCTTTCTCTTGGTACC	7886	False	NA	-1	True	AATAAA	-19	NA	17907213	17889589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898940_17899394_17899430_17902410_17902620_17906751
transcript_50206.nnic	chr16	+	1106	5	NNC	ENSMUSG00000003531.16	novel	1086	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	187.78894403026	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCTGTGCTACCTAG	NA	False	NA	10	True	AATAAA	-16	NA	17884253	17889207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_17884464_17884559_17884721_17887287_17887389_17887927_17888096_17888741
transcript_50207.known	chr16	+	1050	5	FSM	ENSMUSG00000003531.16	ENSMUST00000066027.14	1050	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	141.891463802443	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGATCCTTTCCTAGTG	NA	False	NA	25	True	AATAAA	-31	NA	17884306	17889222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887945_17888096_17888741
transcript_50210.known	chr16	-	687	2	FSM	ENSMUSG00000003526.13	ENSMUST00000132241.2	687	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTGTCTTTTCAATTTG	8213	False	NA	NA	False	NA	NA	NA	17906886	17902067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_17902620_17906751
transcript_50211.known	chr16	+	1938	2	FSM	ENSMUSG00000043811.6	ENSMUST00000059589.6	1938	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGGCCTCTTGGGCTGC	NA	False	NA	7	True	AATAAA	-16	NA	17945505	17970272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_17945767_17968595
transcript_50213.known	chr16	-	4868	11	FSM	ENSMUSG00000060166.7	ENSMUST00000076957.7	4868	11	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	10.6494131293701	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCACTGCCCAGCAATGTG	NA	False	NA	NA	False	AATAAA	-22	NA	18053000	18038616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18041242_18042081_18043080_18044322_18044433_18044509_18044631_18044916_18045053_18045218_18045311_18045639_18045743_18045922_18046096_18046177_18046336_18046498_18046621_18052770
transcript_50224.known	chr16	-	4320	14	FSM	ENSMUSG00000022718.13	ENSMUST00000009321.11	4320	14	0	0	0	0	multi-exon	TRUE	canonical	3	133	junction_13	25.6660390814434	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGTTTCTTTCTTCTG	NA	False	NA	0	True	CATAAA	-17	NA	18107110	18071811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18073470_18074535_18074650_18076057_18076186_18077412_18077520_18077742_18077844_18090584_18090668_18095029_18095129_18095902_18096005_18096182_18096381_18098083_18098367_18098477_18098621_18100987_18101148_18101560_18102561_18106966
transcript_50235.known	chr16	+	2367	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	1000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	269	False	NA	8	True	AATAAA	-22	NA	18066746	18071366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
transcript_50239.known	chr16	+	2235	12	FSM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	76.7194093342424	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	448	False	NA	8	True	AATAAA	-22	NA	18066925	18071366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18067163_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
transcript_50251.known	chr16	+	3520	11	FSM	ENSMUSG00000022721.20	ENSMUST00000140206.8	3520	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	81.7334692766678	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGCTTGGTTGTGCAAAA	269	False	NA	NA	False	CATAAA	-23	NA	18066746	18072636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070787_18070885_18070963
transcript_5029.known	chr1	-	3737	8	FSM	ENSMUSG00000026393.11	ENSMUST00000027642.5	3737	8	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	49.1424418587104	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAGTATCTATCAGGTC	NA	False	NA	-12	True	AATAAA	-16	NA	138547412	138411849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_138414849_138443362_138443471_138444265_138444375_138460474_138460586_138462101_138462165_138471940_138472082_138489440_138489524_138547289
transcript_50292.known	chr16	-	1085	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	0	0	0	0	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	4428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGACAAGGCTATGTG	7133	False	NA	-1	True	AATAAA	-22	NA	18066596	18057647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
transcript_50293.known	chr16	-	923	6	FSM	ENSMUSG00000005732.15	ENSMUST00000052325.7	923	6	0	0	0	0	multi-exon	FALSE	canonical	1	140	junction_5	4913.40247079353	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTTGAAAACCTGGACC	7798	False	NA	-19	True	AATAAA	-4	NA	18065931	18057665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18065890
transcript_50295.nnic	chr16	-	1705	10	NNC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	98.3592558424297	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18161826	18118688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18145446_18145608_18161758
transcript_50298.nic	chr16	-	1593	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_8	63.9256159532311	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18161778	18118688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161661
transcript_50299.known	chr16	-	1622	9	FSM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	57.8273291792038	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGTTGGCTTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	18161906	18118690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161758
transcript_50300.nic	chr16	-	1689	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	76.5371641753207	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18165947	18118688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18165734
transcript_50304.known	chr16	+	4698	19	FSM	ENSMUSG00000118669.2	ENSMUST00000239533.1	4698	19	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	90.4391378459624	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTGACTCATTCTTAAG	NA	False	NA	23	True	NA	NA	NA	18166045	18225826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18166321_18170649_18170702_18207024_18207256_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
transcript_5031.nic	chr1	-	362	3	ISM	ENSMUSG00000026393.11	ENSMUST00000191549.3	2648	7	-65	30538	-20	-30538	5prime_fragment	FALSE	canonical	3	139	junction_1	6	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCGTGGACAATTTAGT	NA	False	NA	NA	False	AATAGA	-9	NA	138547507	138472020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_138472082_138489440_138489524_138547289
transcript_50320.known	chr16	+	1905	18	FSM	ENSMUSG00000075704.18	ENSMUST00000115606.9	1905	18	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_11	21.0007414599702	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCGTGTGCTGTCCCC	NA	False	NA	NA	False	AATAAA	-21	NA	18245166	18297823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
transcript_50326.known	chr16	+	4232	17	FSM	ENSMUSG00000118669.2	ENSMUST00000239547.1	4232	17	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	30.582815333942	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGTTTGTGACTCATTC	NA	False	NA	18	True	NA	NA	NA	18210480	18225821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
transcript_5033.known	chr1	-	565	3	FSM	ENSMUSG00000079283.3	ENSMUST00000112025.3	565	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGTCCACAAGATGCACG	NA	False	NA	-1	True	ATTAAA	-16	NA	138784590	138779720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_138779912_138781308_138781411_138784318
transcript_50345.known	chr16	+	3829	16	FSM	ENSMUSG00000118669.2	ENSMUST00000239538.1	3829	16	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	31.2985622672991	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATGAAGAAAACTGACAA	NA	False	NA	-32	True	NA	NA	NA	18210453	18225006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851
transcript_5035.nic	chr1	+	4216	23	NIC	ENSMUSG00000056268.16	novel	8206	22	NA	NA	-71	-2172	combination_of_known_junctions	TRUE	canonical	3	41	junction_8	11.4355000396583	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTGCAAAACCATTGAAGA	NA	False	NA	NA	False	NA	NA	NA	138891375	139099660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_138891624_138893903_138893969_138950842_138950887_138967737_138967788_138969661_138969782_138981083_138981154_138982278_138982360_138986804_138986865_138988012_138988067_138990598_138990710_139008910_139009012_139013620_139013667_139018191_139018294_139029705_139029832_139038121_139038224_139061408_139061500_139067118_139067160_139068189_139068259_139070571_139070629_139071630_139071739_139095408_139095495_139096569_139096787_139097493
transcript_50369.known	chr16	+	1235	11	FSM	ENSMUSG00000075704.18	ENSMUST00000115604.8	1235	11	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_9	21.8229237271269	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGGTGCTGTCATTTA	NA	False	NA	NA	False	NA	NA	NA	18245187	18275218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773
transcript_50375.nnic	chr16	-	1915	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	-91	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.8299388298005	109	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGAGTTATTCTTTTC	3797	False	NA	NA	False	ATTAAA	-26	NA	18245445	18225627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_18226056_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_50377.nnic	chr16	-	1855	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	-91	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.8299388298005	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATAATCTCTTTTATATT	3797	False	NA	NA	False	NA	NA	NA	18245445	18225687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_18226056_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_50381.nnic	chr16	-	1841	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	-74	8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	90.2773504263389	79	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGAGTTATTCTTTTC	3814	False	NA	NA	False	ATTAAA	-26	NA	18245428	18225627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_18226056_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
transcript_50384.known	chr16	-	1397	6	FSM	ENSMUSG00000000326.14	ENSMUST00000000335.12	1397	6	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_5	48.2825020064205	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGGGG	3888	False	NA	NA	False	AAAAAG	-9	NA	18245354	18226293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_50385.known	chr16	-	1866	5	FSM	ENSMUSG00000000326.14	ENSMUST00000115609.10	1866	5	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	51.7656981021216	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTGGAAGAGGAGATTT	3640	False	NA	NA	False	NA	NA	NA	18245602	18226015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
transcript_50388.known	chr16	+	1604	4	FSM	ENSMUSG00000118669.2	ENSMUST00000239537.1	1604	4	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_1	37.8505834389203	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATAGTTTTTCCTTGTT	NA	False	NA	NA	False	GATAAA	-20	NA	18210447	18217361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576
transcript_5039.known	chr1	+	8206	22	FSM	ENSMUSG00000056268.16	ENSMUST00000168527.8	8206	22	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	13.1823079402048	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGTGGTGATGGCT	NA	False	NA	11	True	AATAAA	-17	NA	138891446	139103781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_138891624_138893903_138893969_138950842_138950887_138967737_138967788_138969661_138969782_138981083_138981154_138982278_138982360_138988012_138988067_138990598_138990710_139008910_139009012_139013620_139013667_139018191_139018294_139029705_139029832_139038121_139038224_139061408_139061500_139067118_139067160_139068189_139068259_139070571_139070629_139071630_139071739_139095408_139095495_139096569_139096787_139097493
transcript_50390.known	chr16	+	532	4	FSM	ENSMUSG00000075704.18	ENSMUST00000131303.8	532	4	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	7.03957069398096	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCCCTGACTGTCTCT	NA	False	NA	12	True	NA	NA	NA	18245211	18256562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251
transcript_50396.known	chr16	+	3592	9	FSM	ENSMUSG00000000884.18	ENSMUST00000167778.9	3592	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	139.677082944913	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGGATCTCAGATGCCCT	NA	False	NA	NA	False	NA	NA	NA	18317635	18385377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362864_18363024_18363866_18363964_18366842_18366942_18371116_18371333_18382784
transcript_50398.known	chr16	+	1412	8	FSM	ENSMUSG00000000884.18	ENSMUST00000000904.15	1412	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	116.273604143022	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317533	18383292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18317602_18317795_18317891_18359184_18359326_18359721_18359848_18362864_18363024_18366842_18366942_18371116_18371333_18382784
transcript_50399.known	chr16	+	3549	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTAGACTTGATTTGTCC	NA	False	NA	NA	False	NA	NA	NA	18317637	18385429	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
transcript_50400.nnic	chr16	+	1338	7	NIC	ENSMUSG00000000884.18	novel	1485	8	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	117.185631466585	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGCCTCAAGGTGGGA	NA	False	NA	13	True	AATAAA	-15	NA	18317466	18383288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_18317602_18317795_18317891_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
transcript_50409.known	chr16	+	865	3	FSM	ENSMUSG00000086965.2	ENSMUST00000146673.2	865	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	96	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTGAGTACCATGCC	NA	False	NA	NA	False	AAAACA	-1	NA	18317650	18320408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18317702_18317795_18317891_18319689
transcript_50412.known	chr16	-	2511	7	FSM	ENSMUSG00000009097.11	ENSMUST00000232335.2	2511	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.7950549357115	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGGCCTTCTGTTTCAG	7740	False	NA	NA	False	AATAAA	-20	NA	18405719	18399728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18401207_18401473_18401575_18401656_18401725_18402168_18402325_18402833_18403006_18403784_18403887_18405285
transcript_50414.known	chr16	-	2143	12	FSM	ENSMUSG00000072214.8	ENSMUST00000096987.7	2143	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.98752549920002	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCGAGTGTCCGAGTGTT	NA	False	NA	-2	True	NA	NA	NA	18448704	18440560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18441547_18441664_18441768_18441854_18441991_18442070_18442168_18442860_18442963_18443096_18443215_18443332_18443468_18443558_18443683_18443918_18444006_18444094_18444192_18448400_18448412_18448557
transcript_50415.known	chr16	+	1416	1	FSM	ENSMUSG00000041378.3	ENSMUST00000043577.3	1416	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTCCTGTCCTCTGTCC	NA	False	NA	NA	False	AGTAAA	-19	NA	18595596	18597012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18595600_18597000
transcript_50416.known	chr16	-	2143	20	FSM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_19	120.274616521947	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCTGTGATCTTATT	NA	False	NA	-2	True	AATAAA	-21	NA	18630722	18599196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264_18630460_18630553
transcript_50420.nic	chr16	+	1968	12	NIC	ENSMUSG00000005262.14	novel	2078	13	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_2	122.971810248132	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGTTTGATATGGTAT	NA	False	NA	5	True	AATAAA	-15	NA	18631040	18654006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
transcript_50422.known	chr16	+	1996	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGATATGGTATGTTGT	NA	False	NA	10	True	AATAAA	-20	NA	18631043	18654011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
transcript_50424.known	chr16	+	934	11	FSM	ENSMUSG00000005262.14	ENSMUST00000172013.9	934	11	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	128.968562060682	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTAAGTTAATTTCATTG	NA	False	NA	NA	False	AAAAAG	-7	NA	18631050	18646464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385
transcript_50434.known	chr16	-	1747	18	FSM	ENSMUSG00000000028.16	ENSMUST00000096990.10	1747	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	122.52143375795	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630376	18599202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18629138_18629232_18630054_18630115_18630264
transcript_50435.known	chr16	+	1281	3	FSM	ENSMUSG00000071632.11	ENSMUST00000055413.13	1281	3	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	45.5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655327	18658910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18655370_18655455_18655624_18657839
transcript_50438.known	chr16	-	1280	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	0	0	0	0	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCGTTTATTTTAATC	NA	False	NA	-7	True	AATAAA	-15	NA	18695612	18690767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
transcript_50440.known	chr16	-	778	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	827.835061403471	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695289	18690975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
transcript_50444.known	chr16	-	675	2	FSM	ENSMUSG00000022706.17	ENSMUST00000232123.2	675	2	0	0	0	0	multi-exon	FALSE	canonical	3	1642	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACATGTGTTTGGGGTGC	NA	False	NA	NA	False	NA	NA	NA	18695359	18693621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_18694158_18695220
transcript_50447.known	chr16	+	4218	25	FSM	ENSMUSG00000022702.17	ENSMUST00000004222.14	4218	25	0	0	0	0	multi-exon	TRUE	canonical	3	33	junction_15	30.9156277902725	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGCCTTCCCTGCCTT	NA	False	NA	7	True	AATAAA	-23	NA	18695815	18789059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18696270_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
transcript_50449.known	chr16	+	2044	13	FSM	ENSMUSG00000022702.17	ENSMUST00000120532.9	2044	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	35.0186458269813	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCTGATTATCCAGA	NA	False	NA	7	True	AATAAA	-16	NA	18695786	18746761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_18695965_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
transcript_5045.nnic	chr1	+	379	3	NIC	ENSMUSG00000056268.16	novel	730	9	NA	NA	-71	-77889	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	43.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGTACATTTACACAATG	NA	False	NA	NA	False	NA	NA	NA	138891375	138906965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_138891624_138893903_138893969_138906899
transcript_50451.nic	chr16	+	2154	13	ISM	ENSMUSG00000022702.17	ENSMUST00000004222.14	4218	25	166	42298	-38	0	5prime_fragment	FALSE	canonical	3	103	junction_2	13.4109718762909	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCTGATTATCCAGA	NA	False	NA	7	True	AATAAA	-16	NA	18695981	18746761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_18696270_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
transcript_50456.known	chr16	+	4175	5	FSM	ENSMUSG00000022686.15	ENSMUST00000121344.8	4175	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	34.3829536253068	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATAAATTATTGTCCCA	NA	False	NA	NA	False	NA	NA	NA	19578957	19590983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_19579228_19579390_19579578_19583857_19583965_19584250_19584372_19587493
transcript_5046.nic	chr1	+	3564	11	NIC	ENSMUSG00000033964.13	novel	3803	11	NA	NA	-115	-1087	intron_retention	TRUE	canonical	3	36	junction_4	7.92464510246358	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGAGTTTAGAAACTTATT	NA	False	NA	NA	False	ATTAAA	-22	NA	139349910	139375834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_139350065_139350771_139352006_139356863_139357072_139358018_139358089_139359666_139359815_139365178_139365309_139366695_139366792_139368082_139368190_139369500_139369607_139370546_139370636_139374612
transcript_50461.known	chr16	+	4258	4	FSM	ENSMUSG00000022686.15	ENSMUST00000079780.10	4258	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	15.8954920234218	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGTAATGTGAATTTAA	NA	False	NA	7	True	AATAAA	-15	NA	19578983	19591213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_19579228_19579390_19579578_19583857_19583965_19587493
transcript_50469.known	chr16	+	8172	8	FSM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	11.8562822407122	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGTTTTAAGTTTG	NA	False	NA	9	True	ATTAAA	-17	NA	19916291	19947971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_19916422_19920741_19920805_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
transcript_50472.nic	chr16	+	2110	7	NIC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	-9	-5987	intron_retention	FALSE	canonical	3	32	junction_1	23.5613855468835	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAATATTTCAAGCAGTC	NA	False	NA	NA	False	AATAAA	-28	NA	19916303	19941984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_19916422_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
transcript_50473.nic	chr16	+	2946	7	NIC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	-9	-5151	intron_retention	FALSE	canonical	3	32	junction_1	23.5613855468835	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATTACTATTGAAGAA	NA	False	NA	NA	False	TTTAAA	-26	NA	19916303	19942820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_19916422_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
transcript_50474.nic	chr16	+	4343	7	NIC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	-9	-3754	intron_retention	FALSE	canonical	3	32	junction_1	23.5613855468835	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTAGTATTTTTG	NA	False	NA	NA	False	AGTAAA	-1	NA	19916303	19944217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_19916422_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
transcript_50475.known	chr16	+	2109	1	FSM	ENSMUSG00000062901.4	ENSMUST00000231740.2	2109	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGATTTCATT	NA	False	NA	NA	False	AATAAA	-23	NA	19916323	19918432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_19916300_19918400
transcript_50479.known	chr16	+	6112	31	FSM	ENSMUSG00000041215.17	ENSMUST00000115560.4	6112	31	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_10	25.0014444027185	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGAGCTGGAAGCACC	NA	False	NA	16	True	AATAAA	-22	NA	19959816	20051323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_19959986_19969191_19969311_19971658_19971757_19972886_19972980_19975636_19975883_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20024996_20026373_20026544_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20048247_20048322_20049514
transcript_50488.known	chr16	+	5997	30	FSM	ENSMUSG00000041215.17	ENSMUST00000090052.11	5997	30	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	34.7469534332064	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGAGCTGGAAGCACC	NA	False	NA	16	True	AATAAA	-22	NA	19959812	20051323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_19959986_19971658_19971757_19972886_19972980_19975636_19975883_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20024996_20026373_20026544_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20048247_20048322_20049514
transcript_5050.known	chr1	+	8361	11	FSM	ENSMUSG00000033964.13	ENSMUST00000039867.10	8361	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	14.624978632463	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACCCAGGTTCTTTTCA	NA	False	NA	NA	False	AATAAA	-22	NA	139350119	139380743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_139350162_139350771_139352006_139356863_139357072_139358018_139358089_139359666_139359815_139365178_139365309_139366695_139366792_139368082_139368190_139369500_139369607_139370546_139370636_139374612
transcript_50500.known	chr16	-	3280	3	FSM	ENSMUSG00000041205.9	ENSMUST00000040880.9	3280	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	5	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCAATATTAATTATTCC	NA	False	NA	NA	False	AATAAA	-29	NA	20060108	20052052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20054790_20055336_20055455_20059683
transcript_50505.known	chr16	-	1362	10	FSM	ENSMUSG00000033918.17	ENSMUST00000136252.8	1362	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	534.615126360388	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121095	20098569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112047_20112153_20116342_20116484_20116880_20117077_20120958
transcript_50507.known	chr16	-	1348	10	FSM	ENSMUSG00000033918.17	ENSMUST00000048642.15	1348	10	0	0	0	0	multi-exon	FALSE	canonical	3	1528	junction_6	107.954723019524	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
transcript_50512.known	chr16	-	1246	9	FSM	ENSMUSG00000033918.17	ENSMUST00000232036.2	1246	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	583.055301300829	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20098836_20101472_20101571_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
transcript_50516.known	chr16	-	848	7	FSM	ENSMUSG00000033918.17	ENSMUST00000232484.2	848	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	637.544682529956	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAGCATCGGCCACCC	NA	False	NA	-122	True	NA	NA	NA	20121129	20098675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20120958
transcript_50517.known	chr16	-	1497	9	FSM	ENSMUSG00000022818.14	ENSMUST00000182741.2	1497	9	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_8	1.5612494995996	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCCACTGCAGTCCCCC	NA	False	NA	NA	False	NA	NA	NA	20135500	20128525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20128732_20128831_20128974_20130978_20131167_20131777_20131920_20132477_20132652_20132947_20133109_20133704_20133855_20134622_20134786_20135329
transcript_50524.known	chr16	-	5811	30	FSM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_25	98.9917903368873	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20245144	20150052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_5053.nic	chr1	+	3930	16	ISM	ENSMUSG00000033952.15	ENSMUST00000200083.5	6072	27	-35	19754	-35	0	5prime_fragment	TRUE	canonical	3	70	junction_14	8.2435159704798	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAATATAAACTAAAAAG	NA	False	NA	NA	False	AAGAAA	-33	NA	139382474	139402072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_139382943_139384477_139384622_139384774_139386183_139389163_139389269_139389509_139389657_139390793_139391040_139391973_139392042_139395655_139395798_139396355_139396487_139397073_139397250_139398175_139398322_139398409_139398496_139399308_139399531_139401275_139401484_139401575_139401719_139401982
transcript_50530.nnic	chr16	-	3523	16	NNC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	1110	0	intron_retention	TRUE	canonical	2	15	junction_15	117.179330752294	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20194282	20150052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20194136
transcript_50540.nnic	chr16	-	1139	7	NNC	ENSMUSG00000022822.17	novel	1136	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_2	90.516419627724	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTATTTACTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	20245144	20219510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_20219785_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_50541.known	chr16	-	1136	7	FSM	ENSMUSG00000022822.17	ENSMUST00000096199.5	1136	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	91.9287163452688	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTATTTACTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	20245104	20219510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20219822_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_50544.known	chr16	-	4526	5	FSM	ENSMUSG00000022822.17	ENSMUST00000134962.2	4526	5	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	11.3578166916005	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGTATTTACTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	20245074	20219509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_50553.known	chr16	+	2554	16	FSM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	0	0	0	0	multi-exon	TRUE	canonical	3	2657	junction_7	154.998007155648	9106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317566	20328073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
transcript_5056.nic	chr1	+	2063	4	ISM	ENSMUSG00000033952.15	ENSMUST00000199998.2	3982	15	-36	12866	-35	4334	5prime_fragment	FALSE	canonical	3	84	junction_1	10.5303793326209	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGATCCATTGTTGCTG	NA	False	NA	NA	False	ATTAAA	-28	NA	139382474	139389206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_139382943_139384477_139384622_139384774_139386183_139389163
transcript_50564.known	chr16	+	2519	15	FSM	ENSMUSG00000003233.13	ENSMUST00000003318.13	2519	15	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_5	17.2123591097342	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGGGTGTCTCTACTCA	NA	False	NA	NA	False	AATAAA	-37	NA	20335731	20350421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20336106_20341005_20341076_20342159_20342282_20342401_20342512_20342689_20342826_20343001_20343096_20343268_20343339_20344388_20344529_20344655_20344733_20344838_20344907_20345016_20345167_20345698_20345831_20346001_20346170_20349526_20349743_20349829
transcript_50567.known	chr16	+	3983	16	FSM	ENSMUSG00000003233.13	ENSMUST00000171572.9	3983	16	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_15	48.314893034021	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTATTATTATTATTATT	NA	False	NA	15	True	NA	NA	NA	20335813	20352760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20336106_20341005_20341076_20342159_20342282_20342401_20342512_20342689_20342826_20343001_20343096_20343268_20343339_20344388_20344529_20344655_20344733_20344838_20344907_20345016_20345167_20345698_20345831_20346001_20346170_20349526_20349743_20349829_20350241_20351033
transcript_50569.known	chr16	+	2080	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTGGGTCTTG	1353	False	NA	17	True	NA	NA	NA	20354227	20362806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
transcript_5057.nic	chr1	+	710	3	ISM	ENSMUSG00000033952.15	ENSMUST00000199998.2	3982	15	-36	17200	-35	0	5prime_fragment	FALSE	canonical	3	84	junction_1	3.5	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAGACAGAATTAGGA	NA	False	NA	NA	False	AAAAAG	-43	NA	139382474	139384872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_139382943_139384477_139384622_139384774
transcript_50594.known	chr16	+	2937	12	FSM	ENSMUSG00000022841.16	ENSMUST00000007216.9	2937	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	997.461306443132	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	1355	False	NA	NA	False	NA	NA	NA	20354229	20363659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359557_20359564_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
transcript_50598.known	chr16	+	3090	21	FSM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	0	0	0	0	multi-exon	TRUE	canonical	3	293	junction_13	17.6705970470723	775	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACACGTGCAAGAGCATG	NA	False	NA	10	True	AATAAA	-19	NA	20367326	20380129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
transcript_50627.known	chr16	+	3152	19	FSM	ENSMUSG00000022842.19	ENSMUST00000003898.12	3152	19	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_18	7.37781124490401	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCCTGTCTCTTCCTT	NA	False	NA	13	True	AATAAA	-13	NA	20448577	20464665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
transcript_50629.known	chr16	+	2495	19	FSM	ENSMUSG00000022842.19	ENSMUST00000122306.8	2495	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_18	9.6775162612963	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTCCAGCTATTTCACT	NA	False	NA	NA	False	GATAAA	-18	NA	20448594	20465226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20465010
transcript_5063.known	chr1	-	11586	17	FSM	ENSMUSG00000026361.10	ENSMUST00000018337.9	11586	17	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_10	26.4054178862975	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTTGCAGAGGGCTC	NA	False	NA	-3	True	NA	NA	NA	143578631	143474537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_143484296_143485107_143485250_143491040_143491142_143493016_143493179_143503239_143503328_143503583_143503620_143510769_143510828_143543362_143543428_143545727_143545807_143547067_143547167_143553376_143553594_143561660_143561750_143567012_143567066_143567151_143567215_143571130_143571201_143574954_143575061_143578231
transcript_50647.known	chr16	-	1451	9	FSM	ENSMUSG00000033809.16	ENSMUST00000045918.15	1451	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.475578621378	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGGTTGCTCGTGCCT	NA	False	NA	13	True	AATAAA	-36	NA	20429518	20424200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429292
transcript_50648.nic	chr16	-	1377	9	NIC	ENSMUSG00000033809.16	novel	1451	9	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	132.226072977307	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429502	20424221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429329
transcript_50653.known	chr16	-	1308	8	FSM	ENSMUSG00000033809.16	ENSMUST00000123774.2	1308	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	136.842975705734	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGTGCAGCATACATA	NA	False	NA	-9	True	AATAAA	-14	NA	20429497	20424222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429292
transcript_50654.known	chr16	-	1239	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231904.2	1239	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.378650313688	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429329
transcript_50655.known	chr16	-	1215	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231471.2	1215	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.403247114701	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20427736_20427837_20429292
transcript_50661.known	chr16	-	1132	7	FSM	ENSMUSG00000033809.16	ENSMUST00000127454.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	157.124154731219	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429481	20424221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20429292
transcript_50662.known	chr16	-	1078	7	FSM	ENSMUSG00000033809.16	ENSMUST00000147867.3	1078	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	158.953260076316	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20429329
transcript_50664.nnic	chr16	-	1007	6	NIC	ENSMUSG00000033809.16	novel	1132	7	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	164.001951207905	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429504	20424221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20429292
transcript_50670.known	chr16	+	1134	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	23	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTGCTTTATGCTTCTG	5899	False	NA	12	True	NA	NA	NA	20430342	20437761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20430571_20436375_20436660_20437139
transcript_50671.known	chr16	-	1291	2	FSM	ENSMUSG00000051146.4	ENSMUST00000052939.4	1291	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGCTGCTTCAGT	NA	False	NA	0	True	AATAAA	-25	NA	20440037	20437964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20438994_20439775
transcript_50673.known	chr16	+	3001	21	FSM	ENSMUSG00000006998.17	ENSMUST00000172207.8	3001	21	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	681.526116520857	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470453	20482164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20470602_20470901_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
transcript_50674.known	chr16	+	2961	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	3766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470401	20482164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
transcript_50679.known	chr16	+	5444	33	FSM	ENSMUSG00000045983.17	ENSMUST00000044783.14	5444	33	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	462.965204171369	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGCCTCTTTACTGAC	NA	False	NA	17	True	ATTAAA	-17	NA	20491472	20511634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20491627_20492617_20492712_20492977_20493065_20493535_20493557_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
transcript_50681.nic	chr16	+	5516	33	NIC	ENSMUSG00000045983.17	novel	5507	32	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	471	junction_14	285.078235903651	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491438	20511633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
transcript_50688.nic	chr16	+	5513	33	NIC	ENSMUSG00000045983.17	novel	5440	33	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	839	junction_14	252.911559316567	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	16	True	ATTAAA	-16	NA	20491438	20511633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
transcript_50697.known	chr16	+	5394	32	FSM	ENSMUSG00000045983.17	ENSMUST00000073840.12	5394	32	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	320.871770382026	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTATTGCCTCTTTACT	NA	False	NA	14	True	ATTAAA	-14	NA	20491498	20511631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
transcript_50736.known	chr16	+	3094	19	FSM	ENSMUSG00000045983.17	ENSMUST00000142344.8	3094	19	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_14	208.868712087016	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGGAAAAAATCATTAAA	NA	False	NA	NA	False	NA	NA	NA	20491498	20502586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561
transcript_50737.nic	chr16	+	3157	19	NIC	ENSMUSG00000045983.17	novel	3094	19	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	839	junction_14	143.77611410681	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATCATTAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	20491438	20502592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561
transcript_5074.known	chr1	+	3337	4	FSM	ENSMUSG00000018196.19	ENSMUST00000185362.7	3337	4	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	59.84981202978	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATCCTTATCGTCAG	NA	False	NA	NA	False	NA	NA	NA	143615294	143625139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_143615497_143617385_143617450_143620784_143620962_143622245
transcript_50747.nic	chr16	+	3103	18	ISM	ENSMUSG00000045983.17	ENSMUST00000115463.8	5378	32	-60	9041	-37	0	5prime_fragment	FALSE	canonical	3	236	junction_1	274.105617004388	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATCATTAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	20491435	20502592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561
transcript_5076.known	chr1	+	580	4	FSM	ENSMUSG00000018196.19	ENSMUST00000111957.10	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	245.711664806989	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGATTGGCCAGTTTT	NA	False	NA	31	True	AATAAA	-18	NA	143615352	143622514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_143615423_143617385_143617450_143620784_143620962_143622245
transcript_50768.nic	chr16	+	2871	17	ISM	ENSMUSG00000045983.17	ENSMUST00000142344.8	3094	19	-60	1052	-34	1051	5prime_fragment	FALSE	canonical	3	471	junction_14	209.310167201094	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGATGAAGCTGCTAC	NA	False	NA	NA	False	AAAAAG	-7	NA	20491438	20501534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500483_20500673_20500791_20500990_20501408
transcript_50769.nic	chr16	+	2868	17	NIC	ENSMUSG00000045983.17	novel	3094	19	NA	NA	-34	1051	combination_of_known_junctions	FALSE	canonical	3	839	junction_14	136.57093795442	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGATGAAGCTGCTAC	NA	False	NA	NA	False	AAAAAG	-7	NA	20491438	20501534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408
transcript_5077.known	chr1	-	8738	9	FSM	ENSMUSG00000018199.10	ENSMUST00000159879.2	8738	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	6.34428877022476	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTCTTTTAATCATTT	NA	False	NA	-1	True	AATAAA	-17	NA	143652806	143626527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_143633633_143635680_143635828_143636090_143636205_143637007_143637125_143641170_143641309_143641511_143641659_143642327_143642549_143646163_143646765_143652658
transcript_50780.nic	chr16	+	2814	16	ISM	ENSMUSG00000045983.17	ENSMUST00000115463.8	5378	32	-60	10099	-37	1051	5prime_fragment	FALSE	canonical	3	236	junction_1	280.542331921584	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGATGAAGCTGCTAC	NA	False	NA	NA	False	AAAAAG	-7	NA	20491435	20501534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408
transcript_50794.nic	chr16	+	2448	15	NIC	ENSMUSG00000045983.17	novel	3094	19	NA	NA	-34	93	combination_of_known_junctions	FALSE	canonical	3	839	junction_14	142.709298497158	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAATAAAGCAGAGAAGGC	NA	False	NA	NA	False	CATAAA	-2	NA	20491438	20500576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486
transcript_5082.nic	chr1	+	1551	12	NIC	ENSMUSG00000018189.13	novel	1696	11	NA	NA	-69	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	455.061706831934	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143652940	143682679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143678665_143678816_143682421
transcript_50832.known	chr16	-	3128	24	FSM	ENSMUSG00000022843.18	ENSMUST00000007207.15	3128	24	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_10	37.9003269459341	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCTGTTGGCTCATAT	NA	False	NA	1	True	AATAAA	-39	NA	20534867	20521713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
transcript_5084.nic	chr1	+	1486	12	NIC	ENSMUSG00000018189.13	novel	1845	11	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	458.199927492049	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143653002	143682679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143678665_143678816_143682421
transcript_50851.nnic	chr16	-	3259	23	NIC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	-219	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_10	55.8162014750864	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGCCACTCATGTATAG	NA	False	NA	-23	True	AATAAA	-23	NA	20535133	20521737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
transcript_5086.known	chr1	+	1696	11	FSM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_8	216.947090323885	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGATTATTTGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	143653009	143683043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143682421
transcript_50873.nic	chr16	-	3305	23	NIC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	-214	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	59.9737718155622	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGCCACTCATGTATAG	NA	False	NA	-23	True	AATAAA	-23	NA	20535128	20521737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
transcript_5089.known	chr1	+	1845	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTTGTTACCTAATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	143653018	143683204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
transcript_50900.known	chr16	-	3511	22	FSM	ENSMUSG00000022843.18	ENSMUST00000153075.8	3511	22	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_8	38.9931676089723	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACACCTAATTAGCCAC	NA	False	NA	-33	True	AATAAA	-13	NA	20534914	20521747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
transcript_5093.nic	chr1	+	1085	10	ISM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	-10	5071	-10	2244	5prime_fragment	FALSE	canonical	3	615	junction_8	227.911288784815	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGGTTTCTTGGTGACT	NA	False	NA	NA	False	NA	NA	NA	143652999	143677972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872
transcript_5094.nic	chr1	+	1089	10	ISM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	-26	5232	-17	2244	5prime_fragment	FALSE	canonical	3	576	junction_8	238.956527892046	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGGTTTCTTGGTGACT	NA	False	NA	NA	False	NA	NA	NA	143652992	143677972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872
transcript_5096.nic	chr1	+	941	9	ISM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	-10	7315	-10	0	5prime_fragment	FALSE	canonical	3	615	junction_8	241.055977679459	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGCTTATTGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	143652999	143675728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658
transcript_5097.nic	chr1	+	956	9	ISM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	-9	7448	0	28	5prime_fragment	FALSE	canonical	3	576	junction_8	252.680999483539	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAAGAGATATAAGGTAT	NA	False	NA	NA	False	NA	NA	NA	143653009	143675756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661
transcript_5098.nic	chr1	+	814	8	ISM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	0	8859	0	1360	5prime_fragment	FALSE	canonical	3	1125	junction_5	114.286249998744	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATATATGAACAGAAGATA	NA	False	NA	NA	False	NA	NA	NA	143653009	143674184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128
transcript_50983.known	chr16	+	962	7	FSM	ENSMUSG00000050821.15	ENSMUST00000232207.2	962	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.687184270936277	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCTGGAGGATGGGTTA	NA	False	NA	NA	False	NA	NA	NA	20512000	20520314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20512223_20513517_20513580_20514488_20514632_20517671_20517766_20518017_20518201_20518378_20518496_20520173
transcript_50986.known	chr16	+	950	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_4	109.533955922353	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	904	False	NA	15	True	ATTAAA	-16	NA	20536414	20541017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
transcript_50988.known	chr16	+	689	4	FSM	ENSMUSG00000021018.9	ENSMUST00000231656.2	689	4	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	345.101273380567	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTTCTCCATTGTCATT	1069	False	NA	13	True	ATTAAA	-14	NA	20536579	20541015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20536745_20537573_20537658_20539268_20539353_20540659
transcript_50990.known	chr16	+	3275	23	FSM	ENSMUSG00000006958.15	ENSMUST00000007171.13	3275	23	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_1	2.73332661424962	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTGAGGTAGGCTCTT	3222	False	NA	NA	False	ATTAAA	-20	NA	20551876	20561134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20552046_20552280_20552385_20552756_20552887_20553022_20553152_20553236_20553337_20553435_20553524_20553866_20554009_20554120_20554250_20554330_20554414_20554495_20554644_20554786_20554894_20555013_20555134_20555658_20555816_20556091_20556313_20556943_20557058_20557302_20557567_20557653_20557748_20557860_20557915_20558156_20558261_20558703_20558807_20559939_20560095_20560245_20560346_20560674
transcript_50992.known	chr16	+	3076	23	FSM	ENSMUSG00000006958.15	ENSMUST00000232646.2	3076	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.04952238503991	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACAAGTCTACAAGGGGAA	3224	False	NA	NA	False	NA	NA	NA	20551878	20560871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_20552046_20552214_20552385_20552756_20552887_20553022_20553152_20553236_20553337_20553435_20553524_20553866_20554009_20554120_20554250_20554330_20554414_20554495_20554644_20554786_20554894_20555013_20555134_20555658_20555816_20556091_20556313_20556943_20557058_20557302_20557567_20557653_20557748_20557860_20557915_20558156_20558261_20558703_20558807_20559939_20560095_20560245_20560346_20560674
transcript_50995.known	chr16	-	1558	6	FSM	ENSMUSG00000022847.16	ENSMUST00000076422.13	1558	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	5.38887743412299	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGCTTTCATACATTAA	NA	False	NA	2	True	TATAAA	-23	NA	20549348	20543907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20544833_20545055_20545224_20547131_20547219_20547468_20547597_20547813_20547968_20549252
transcript_51.known	ERCC-00150	+	727	1	FSM	ERCC-00150A	DQ883659	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00150_+_0_700
transcript_5100.known	chr1	+	7480	51	FSM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_6	73.7537117710017	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTTTCTTCATTTCA	NA	False	NA	25	True	AATAAA	-24	NA	150269000	150325686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
transcript_51000.known	chr16	-	496	1	FSM	ENSMUSG00000099764.2	ENSMUST00000127484.2	496	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	510	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTGGAGTTTATGTTGT	NA	False	NA	NA	False	NA	NA	NA	20641390	20640894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_20640900_20641400
transcript_51003.known	chr16	+	4185	16	FSM	ENSMUSG00000005958.16	ENSMUST00000006112.7	4185	16	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_8	11.1167541225945	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGCCCCTGCTCGTTCT	NA	False	NA	11	True	AATAAA	-14	NA	21023504	21042054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21024014_21031639_21031705_21033074_21033748_21035945_21036102_21036764_21037116_21037244_21037370_21037543_21037704_21037788_21037898_21038204_21038258_21039169_21039293_21039396_21039645_21040034_21040251_21040376_21040527_21040614_21040809_21040898_21041055_21041157
transcript_51009.known	chr16	-	1455	1	FSM	ENSMUSG00000116632.2	ENSMUST00000231504.2	1455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTGTGTTGCACAGTT	NA	False	NA	NA	False	AATAAA	-16	NA	21152106	21150651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21150700_21152100
transcript_51010.known	chr16	+	4935	47	FSM	ENSMUSG00000033653.19	ENSMUST00000117598.8	4935	47	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	17.1577937561462	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGGCCTGCCAGTCTCTT	NA	False	NA	13	True	AATAAA	-19	NA	21241950	21463422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21241976_21253436_21253814_21254502_21254572_21261083_21261215_21262838_21262933_21266004_21266038_21267098_21267154_21274978_21275104_21276128_21276216_21278490_21278559_21279871_21280026_21280127_21280188_21282344_21282453_21285163_21285245_21288866_21289038_21293997_21294073_21295223_21295260_21296235_21296327_21296594_21296642_21297143_21297234_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21372824_21372973_21378083_21378174_21378947_21378991_21381879_21381984_21386718_21386804_21387138_21387222_21393716_21393798_21395374_21395545_21400282_21400449_21426917_21426972_21459428_21459510_21462870
transcript_51013.nic	chr16	+	4926	47	NIC	ENSMUSG00000033653.19	novel	4935	47	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	25.942753613068	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGGCCTGCCAGTCTCTT	NA	False	NA	13	True	AATAAA	-19	NA	21241906	21463422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_21241976_21253489_21253814_21254502_21254572_21261083_21261215_21262838_21262933_21266004_21266038_21267098_21267154_21274978_21275104_21276128_21276216_21278490_21278559_21279871_21280026_21280127_21280188_21282344_21282453_21285163_21285245_21288866_21289038_21293997_21294073_21295223_21295260_21296235_21296327_21296594_21296642_21297143_21297234_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21372824_21372973_21378083_21378174_21378947_21378991_21381879_21381984_21386718_21386804_21387138_21387222_21393716_21393798_21395374_21395545_21400282_21400449_21426917_21426972_21459428_21459510_21462870
transcript_51022.nnic	chr16	+	3718	37	NNC	ENSMUSG00000033653.19	novel	4952	44	NA	NA	-17	12438	at_least_one_novel_splicesite	TRUE	canonical	3	9	junction_35	35.0999784566077	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACAACTTTTCAACTGAG	NA	False	NA	NA	False	NA	NA	NA	21241850	21364353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_21241976_21253436_21253814_21254502_21254572_21261083_21261215_21262838_21262933_21266004_21266038_21267098_21267154_21274978_21275104_21276128_21276216_21278490_21278559_21279871_21280026_21280127_21280188_21282344_21282453_21285163_21285245_21288866_21289038_21293997_21294073_21295223_21295260_21296235_21296327_21296594_21296642_21297143_21297234_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21363920_21364024_21364116
transcript_51028.nnic	chr16	+	3455	28	NNC	ENSMUSG00000033653.19	novel	804	10	NA	NA	15731	0	at_least_one_novel_splicesite	TRUE	canonical	2	6	junction_1	33.1526378089284	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGGCCTGCCAGTCTCTT	4769	False	NA	13	True	AATAAA	-19	NA	21304667	21463422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_21305165_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21372824_21372973_21378083_21378174_21378947_21378991_21381879_21381984_21386718_21386804_21387138_21387222_21393716_21393798_21395374_21395545_21400282_21400449_21426917_21426972_21459428_21459510_21462870
transcript_51030.known	chr16	+	722	3	FSM	ENSMUSG00000033653.19	ENSMUST00000127903.2	722	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	94.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAGACCGCAGATGGGC	NA	False	NA	NA	False	NA	NA	NA	21446380	21463166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21446726_21459428_21459510_21462870
transcript_51031.known	chr16	+	5032	47	FSM	ENSMUSG00000033653.19	ENSMUST00000115397.8	5032	47	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	28.353993727559	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGTCTCTTGGTTGTCA	NA	False	NA	21	True	AATAAA	-27	NA	21241867	21463430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21241976_21253436_21253814_21254502_21254572_21261083_21261215_21262838_21262933_21266004_21266038_21267098_21267158_21274976_21275104_21276128_21276216_21278490_21278559_21279871_21280026_21280127_21280188_21282344_21282453_21285163_21285245_21288866_21289038_21293997_21294073_21295223_21295260_21296235_21296327_21296594_21296642_21297143_21297234_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21372824_21372973_21378083_21378174_21378947_21378991_21381879_21381984_21386718_21386804_21387138_21387222_21393716_21393798_21395374_21395545_21400282_21400449_21426917_21426972_21459428_21459510_21462870
transcript_51034.known	chr16	-	5164	2	FSM	ENSMUSG00000043391.11	ENSMUST00000053336.8	5164	2	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACTGCCGTTGGGGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	21513415	21467794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21472509_21512965
transcript_51038.known	chr16	-	1135	2	FSM	ENSMUSG00000043391.11	ENSMUST00000231592.2	1135	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTCTCCTGTTTGCT	NA	False	NA	3	True	AATAAA	-30	NA	21513379	21495471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21496193_21512965
transcript_51040.known	chr16	-	2981	7	FSM	ENSMUSG00000022853.8	ENSMUST00000023559.7	2981	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	3.35410196624968	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATTGTGTAAAAAACTG	NA	False	NA	NA	False	AATAAA	-19	NA	21606557	21580036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21582087_21584975_21585318_21589165_21589271_21592244_21592357_21594094_21594262_21596548_21596653_21606456
transcript_51043.nnic	chr16	+	956	6	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	51.1921869038626	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613076	21627790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21625720_21625870_21627427
transcript_51044.known	chr16	+	767	4	FSM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	60.8896999134957	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613067	21627790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21613197_21614599_21614726_21625720_21625870_21627427
transcript_51047.known	chr16	+	574	3	FSM	ENSMUSG00000097290.10	ENSMUST00000181960.3	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_2	32	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613111	21627790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21613197_21614599_21614726_21627427
transcript_51049.known	chr16	-	1360	5	FSM	ENSMUSG00000022856.10	ENSMUST00000023562.9	1360	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	14.1244468918255	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGCAGGTTCTGAATGT	9190	False	NA	-2	True	ATTAAA	-16	NA	21766302	21753075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21764750_21764905_21766117
transcript_51050.known	chr16	-	1184	4	FSM	ENSMUSG00000022856.10	ENSMUST00000232635.2	1184	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	70.6304938866115	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGCAGGTTCTGAATG	9211	False	NA	-3	True	ATTAAA	-15	NA	21766281	21753076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21766117
transcript_51056.known	chr16	-	3923	10	FSM	ENSMUSG00000044626.14	ENSMUST00000060673.8	3923	10	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_8	25.7197623013804	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAATTCTCCATAGACATG	NA	False	NA	NA	False	NA	NA	NA	21814413	21772566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802650_21803019_21814070
transcript_51058.known	chr16	-	2118	10	FSM	ENSMUSG00000044626.14	ENSMUST00000231766.2	2118	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	59.9637750728526	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	21814190	21774142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792892_21794982_21795085_21800085_21800195_21802650_21803019_21814070
transcript_51064.known	chr16	-	2065	10	FSM	ENSMUSG00000044626.14	ENSMUST00000231682.2	2065	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	60.1727964457259	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGTTTGGCTCTTACGT	NA	False	NA	NA	False	NA	NA	NA	21814263	21774333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802591_21803019_21814070
transcript_51072.known	chr16	-	2051	9	FSM	ENSMUSG00000044626.14	ENSMUST00000074230.12	2051	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	59.399994739057	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	21814201	21774136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21794982_21795085_21800085_21800195_21802650_21803019_21814070
transcript_5109.nic	chr1	+	2571	18	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	27	33698	27	-166	5prime_fragment	FALSE	canonical	3	414	junction_6	51.6480637715441	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACACCCCCTGGCTGACA	NA	False	NA	NA	False	AATGAA	-25	NA	150269027	150291988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819
transcript_51093.known	chr16	+	4499	17	FSM	ENSMUSG00000022855.10	ENSMUST00000023561.8	4499	17	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_11	50.6099900587819	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGTGCTTTATGCTTGT	2202	False	NA	35	True	AGTAAA	-42	NA	21828233	21868019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21828493_21830243_21830303_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
transcript_51101.known	chr16	+	2135	17	FSM	ENSMUSG00000022855.10	ENSMUST00000231724.2	2135	17	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	111.888616489793	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTTGAAACCCTGTTT	2230	False	NA	NA	False	NA	NA	NA	21828261	21865616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21828493_21830243_21830370_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
transcript_51114.known	chr16	+	2883	16	FSM	ENSMUSG00000022855.10	ENSMUST00000231798.2	2883	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	119.348341700531	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTGATAATTTTTCCTC	2371	False	NA	22	True	AATAAA	-22	NA	21828402	21866631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21828493_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
transcript_51125.known	chr16	+	1605	1	FSM	ENSMUSG00000022855.10	ENSMUST00000231408.2	1605	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAAAGTCT	2253	False	NA	NA	False	NA	NA	NA	21828284	21829889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_21828300_21829900
transcript_51129.known	chr16	-	3899	16	FSM	ENSMUSG00000033581.18	ENSMUST00000100052.11	3899	16	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_2	81.6059366032208	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2273	False	NA	NA	False	AATATA	-16	NA	21982049	21877758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
transcript_5115.known	chr1	-	3273	14	FSM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_9	14.7515920312223	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGAATTTTAAAATAGGA	633	False	NA	NA	False	AATAAA	-21	NA	150268831	150237055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
transcript_51156.known	chr16	-	1687	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCTTTCTAAATATC	NA	False	NA	-20	True	AATAAA	-14	NA	22084676	22065211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
transcript_51157.known	chr16	-	3403	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	0	0	0	0	multi-exon	TRUE	canonical	3	1235	junction_5	313.549014310363	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACATAATGAATACGTGTG	NA	False	NA	NA	False	AATAAA	-22	NA	22084755	22063298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
transcript_51176.known	chr16	-	1376	2	FSM	ENSMUSG00000022858.17	ENSMUST00000160579.2	1376	2	0	0	0	0	multi-exon	FALSE	canonical	3	646	junction_1	0	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCTATGGCAAATTTAAA	NA	False	NA	NA	False	AATAAA	-13	NA	22084668	22076813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22078012_22084490
transcript_51180.known	chr16	-	3975	13	FSM	ENSMUSG00000013089.16	ENSMUST00000079601.13	3975	13	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_9	424.638105724549	1417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCAACCTGCCTCTTT	7486	False	NA	-13	True	AATAAA	-22	NA	22258469	22200058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
transcript_51195.nic	chr16	-	3291	8	NIC	ENSMUSG00000004462.8	novel	2645	8	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	32.3772406836301	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTTTACTGTGCCAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	22676323	22631969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
transcript_51196.known	chr16	-	2803	8	FSM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	24.7526539496479	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGCCAGAGTTGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	22676419	22631963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
transcript_51197.known	chr16	-	2645	8	FSM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	25.2214680179325	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTTTACTGTGCCAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	22676417	22631969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
transcript_51199.nic	chr16	-	3359	8	NIC	ENSMUSG00000004462.8	novel	2803	8	NA	NA	-27	-55	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	32.3772406836301	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAACTTTTTCTCCTTTGGT	NA	False	NA	NA	False	AATAAA	-10	NA	22676446	22632024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
transcript_51203.known	chr16	-	2980	8	FSM	ENSMUSG00000004462.8	ENSMUST00000232345.2	2980	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	47.7775457464175	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATAATAAGCAA	NA	False	NA	NA	False	AATAGA	-40	NA	22676290	22636162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22637279_22640831_22641330_22641452_22641640_22642116_22642198_22644515_22644883_22652627_22652784_22660478_22660858_22676094
transcript_51208.nic	chr16	-	2666	7	ISM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	106	4455	-19	-256	5prime_fragment	FALSE	canonical	3	51	junction_6	22.6697301851316	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTCTGAGTGGTTTGC	NA	False	NA	NA	False	AAGAAA	-13	NA	22676313	22636418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
transcript_51211.nic	chr16	-	2684	7	ISM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	-27	4570	-27	-371	5prime_fragment	FALSE	canonical	3	51	junction_6	22.6697301851316	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTAGATGAAAGTCATGAA	NA	False	NA	NA	False	AATAAA	-40	NA	22676446	22636533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
transcript_51216.nic	chr16	-	3084	7	NIC	ENSMUSG00000004462.8	novel	2980	8	NA	NA	-26	-435	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	32.7193452800565	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCACATAGAGCATTATTA	NA	False	NA	NA	False	AATAAA	-16	NA	22676320	22636597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
transcript_51217.nic	chr16	-	2620	7	ISM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	-27	4634	-27	-435	5prime_fragment	FALSE	canonical	3	51	junction_6	22.6697301851316	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCACATAGAGCATTATTA	NA	False	NA	NA	False	AATAAA	-16	NA	22676446	22636597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
transcript_51218.nic	chr16	-	2481	7	ISM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	-40	4628	-38	-435	5prime_fragment	FALSE	canonical	3	49	junction_6	23.3410701458942	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCACATAGAGCATTATTA	NA	False	NA	NA	False	AATAAA	-16	NA	22676457	22636597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
transcript_51222.known	chr16	-	790	4	FSM	ENSMUSG00000004462.8	ENSMUST00000232251.2	790	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	44.1688678696759	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTCTCATTGAAGGCAC	NA	False	NA	NA	False	NA	NA	NA	22675615	22644738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22644883_22652627_22652784_22660478_22660858_22675504
transcript_51225.known	chr16	-	1371	4	FSM	ENSMUSG00000004462.8	ENSMUST00000232681.2	1371	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	30.539591789457	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATGCCTTTGTTAGGA	NA	False	NA	NA	False	NA	NA	NA	22676292	22644244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22644883_22652627_22652784_22660478_22660858_22676094
transcript_51228.known	chr16	+	1927	10	FSM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_3	70.1998909640038	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTATCTGTCCAAG	NA	False	NA	30	True	AATAAA	-34	NA	22676594	22691138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
transcript_5123.nic	chr1	+	1621	13	ISM	ENSMUSG00000006005.19	ENSMUST00000124973.9	7430	52	-41	39775	-41	-3923	5prime_fragment	FALSE	canonical	3	82	junction_1	126.237513133863	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTAATAAGTATCTGGAT	NA	False	NA	NA	False	AATAAA	-2	NA	150268547	150285791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150268765_150269106_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730
transcript_51231.nic	chr16	+	1301	6	ISM	ENSMUSG00000022868.7	ENSMUST00000232556.2	1336	7	1810	0	-542	0	3prime_fragment	FALSE	canonical	3	93	junction_1	9.66643677887566	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTTCCTTGTCT	NA	False	NA	22	True	NA	NA	NA	22712966	22718193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_22713186_22713544_22713630_22713943_22714108_22715257_22715360_22716877_22716962_22717546
transcript_51235.nic	chr16	+	465	3	ISM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	-22	6914	-22	-6832	5prime_fragment	FALSE	canonical	3	1038	junction_2	59	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAAAACAGTACGATACTTA	NA	False	NA	NA	False	NA	NA	NA	22676572	22684224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_22676860_22681291_22681449_22684203
transcript_51246.known	chr16	+	1520	8	FSM	ENSMUSG00000022871.14	ENSMUST00000170805.9	1520	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	163.600059877241	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGGAAATGAGACTAA	NA	False	NA	35	True	AATAAA	-41	NA	22737131	22758528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22737341_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_51250.known	chr16	+	1544	8	FSM	ENSMUSG00000022871.14	ENSMUST00000023587.12	1544	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	202.97702694982	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22738986	22758502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_51251.known	chr16	+	798	7	FSM	ENSMUSG00000022871.14	ENSMUST00000231880.2	798	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	173.937728320607	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGATGATGAGAAGCCCGA	NA	False	NA	NA	False	NA	NA	NA	22737248	22758154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22737345_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_51252.known	chr16	+	1094	7	FSM	ENSMUSG00000022871.14	ENSMUST00000116625.10	1094	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	171.730408877791	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22739201	22758502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22739246_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_51256.known	chr16	-	1577	11	FSM	ENSMUSG00000060459.15	ENSMUST00000115349.9	1577	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	3.1559467676119	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTCTCCTTTCAGCCA	9727	False	NA	NA	False	AATAAA	-21	NA	22847818	22804603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22804819_22806994_22807076_22815772_22815860_22815960_22816069_22818563_22818737_22819280_22819366_22822681_22822790_22830746_22830920_22843589_22843672_22845797_22845909_22847464
transcript_51260.known	chr16	+	1965	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATATTCACTTTATAT	6072	False	NA	NA	False	AATAAA	-1	NA	22926526	22932680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
transcript_51262.nnic	chr16	+	2294	12	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_11	564.272309855287	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	5764	False	NA	NA	False	AATAAA	-18	NA	22926218	22932697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
transcript_51272.known	chr16	+	2708	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6054	False	NA	NA	False	AATAAA	-17	NA	22926508	22932696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
transcript_51275.known	chr16	+	2208	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	0	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	5739	False	NA	NA	False	AATAAA	-18	NA	22926193	22932697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
transcript_51287.nnic	chr16	+	2287	11	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	-108	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_10	666.107979234598	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	5631	False	NA	NA	False	AATAAA	-18	NA	22926085	22932697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
transcript_51296.known	chr16	-	1228	11	FSM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_10	165.436271718145	811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATATACAATTTTATTTA	NA	False	NA	-26	True	AATAAA	-23	NA	22946487	22932692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
transcript_51301.nic	chr16	+	3548	10	ISM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	-70	0	-70	0	intron_retention	FALSE	canonical	3	1315	junction_4	273.717210111296	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	5669	False	NA	NA	False	AATAAA	-18	NA	22926123	22932697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
transcript_51317.known	chr16	+	1737	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6073	False	NA	NA	False	AATAAA	-18	NA	22926527	22932697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
transcript_5132.nic	chr1	+	1500	12	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	10	39895	10	-3923	5prime_fragment	FALSE	canonical	3	414	junction_6	47.4886676347001	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTAATAAGTATCTGGAT	NA	False	NA	NA	False	AATAAA	-2	NA	150269010	150285791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730
transcript_5133.nic	chr1	+	1393	11	ISM	ENSMUSG00000006005.19	ENSMUST00000124973.9	7430	52	-41	41006	-41	-5154	5prime_fragment	FALSE	canonical	3	82	junction_1	133.115588869223	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCTTGAGAAAATAGGAAAA	NA	False	NA	16	True	AAAAAG	-4	NA	150268547	150284560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150268765_150269106_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494
transcript_51330.known	chr16	-	1279	10	FSM	ENSMUSG00000022881.16	ENSMUST00000115338.8	1279	10	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_9	172.55065457732	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946467	22932700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
transcript_51333.known	chr16	+	1001	9	FSM	ENSMUSG00000022884.17	ENSMUST00000232287.2	1001	9	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	545.355847131027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAAGCCGTGTTCTGATCA	6054	False	NA	NA	False	NA	NA	NA	22926508	22930308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252
transcript_51337.nic	chr16	+	3024	9	ISM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	4	189	0	0	intron_retention	FALSE	canonical	3	563	junction_3	488.360122629807	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
transcript_5136.known	chr1	-	1809	14	FSM	ENSMUSG00000006010.15	ENSMUST00000094477.4	1809	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	45.878537865612	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTTTA	970	False	NA	NA	False	NA	NA	NA	150268494	150238284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250529_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268354
transcript_51367.nic	chr16	-	584	6	ISM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	-3	1809	-3	-1045	5prime_fragment	FALSE	canonical	3	1237	junction_5	174.114215387486	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAGATTCTGCCTCATC	NA	False	NA	NA	False	AAAAAG	-10	NA	22946490	22934501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
transcript_51373.nnic	chr16	-	2773	4	NNC	ENSMUSG00000022887.10	novel	3786	11	NA	NA	38211	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.44948974278318	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGGCTTGAGAGTTTG	NA	False	NA	0	True	AATAAA	-17	NA	23301135	23287112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_23289481_23293623_23293699_23295016_23295155_23300943
transcript_51374.nnic	chr16	-	2570	4	NNC	ENSMUSG00000022887.10	novel	3786	11	NA	NA	38211	-203	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.44948974278318	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCTGGAAAGGCCTGGAG	NA	False	NA	NA	False	AAAACA	-6	NA	23301135	23287315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_23289481_23293623_23293699_23295016_23295155_23300943
transcript_51376.known	chr16	+	15459	13	FSM	ENSMUSG00000033306.16	ENSMUST00000038053.14	15459	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.30298686376774	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTCTGTGTGGAATTC	NA	False	NA	NA	False	AATAAA	-18	NA	24212289	24811328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_24212355_24261530_24261641_24275582_24275693_24378341_24378408_24426865_24427068_24480426_24480540_24500495_24500622_24580342_24581027_24663840_24663968_24708539_24708710_24790580_24790760_24795949_24796071_24797942
transcript_51382.known	chr16	+	4520	11	FSM	ENSMUSG00000022514.15	ENSMUST00000023156.13	4520	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	6.68505796534331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTTTGTGCATGTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	26400506	26536494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_26400637_26442904_26442970_26495458_26495745_26498852_26499040_26511494_26511661_26513971_26514044_26517576_26517704_26519837_26519987_26529230_26529381_26530866_26531011_26533450
transcript_51383.known	chr16	+	2306	8	FSM	ENSMUSG00000022514.15	ENSMUST00000174202.8	2306	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	3.88087934491604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTTCGTAGCATTAATTG	NA	False	NA	NA	False	AATAAA	-22	NA	26400502	26521106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_26400637_26442904_26442970_26495458_26495745_26498852_26499040_26511494_26511661_26513971_26514044_26517576_26517704_26519837
transcript_51385.known	chr16	+	7089	11	FSM	ENSMUSG00000038127.16	ENSMUST00000100026.10	7089	11	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_6	12.5415310070182	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGCCTACTGTTTTCAT	NA	False	NA	13	True	AATAAA	-22	NA	27207618	27270968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
transcript_51386.known	chr16	-	3055	2	FSM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4797	False	NA	0	True	AATAAA	-24	NA	28748425	28644927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_28647762_28748204
transcript_51388.nic	chr16	+	3444	31	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-57	0	combination_of_known_junctions	TRUE	canonical	3	139	junction_4	92.8546295142155	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTACGTGTGTTCCAGG	NA	False	NA	6	True	AATAAA	-16	NA	29398094	29470694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_51389.nic	chr16	+	3708	31	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-57	261	combination_of_known_junctions	FALSE	canonical	3	139	junction_4	92.8546295142155	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCATCAATTGTATATGACA	NA	False	NA	21	True	AATAAA	-22	NA	29398094	29470958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_51392.known	chr16	+	3230	30	FSM	ENSMUSG00000038084.17	ENSMUST00000038867.13	3230	30	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_4	99.4304230950511	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTACGTGTGTTCCAGG	NA	False	NA	6	True	AATAAA	-16	NA	29398197	29470694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_51396.nic	chr16	+	3390	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTACGTGTGTTCCAGG	NA	False	NA	6	True	AATAAA	-16	NA	29398094	29470694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_51397.nic	chr16	+	3553	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	0	261	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCATCAATTGTATATGACA	NA	False	NA	21	True	AATAAA	-22	NA	29398195	29470958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_51398.nic	chr16	+	6098	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-57	-300	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATTATGATTCTATTAT	NA	False	NA	1	True	ATTAAA	-12	NA	29398094	29473402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_514.known	chr1	-	4494	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	0	0	0	0	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGTGTGTGAACTAATT	NA	False	NA	NA	False	AATAAA	-31	NA	13730770	13693553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
transcript_5140.nic	chr1	+	1328	10	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	-46	41126	-46	-5154	5prime_fragment	FALSE	canonical	3	414	junction_6	42.9265810195116	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCTTGAGAAAATAGGAAAA	NA	False	NA	16	True	AAAAAG	-4	NA	150268954	150284560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494
transcript_51401.known	chr16	+	6230	29	FSM	ENSMUSG00000038084.17	ENSMUST00000160597.8	6230	29	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	76.2263931339013	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCTTTCTCCCTACACT	NA	False	NA	NA	False	NA	NA	NA	29398151	29473702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_51418.known	chr16	-	2375	1	FSM	ENSMUSG00000097313.3	ENSMUST00000232356.2	2375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	29765572	29763197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_29763200_29765600
transcript_51419.known	chr16	+	2428	3	FSM	ENSMUSG00000097184.3	ENSMUST00000181485.3	2428	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGTATGTAGTATATCATA	NA	False	NA	NA	False	NA	NA	NA	29827484	29840248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_29827549_29835374_29835462_29837971
transcript_51421.known	chr16	+	1468	4	FSM	ENSMUSG00000022528.9	ENSMUST00000023171.8	1468	4	0	0	0	0	multi-exon	FALSE	canonical	3	729	junction_2	50.3388517946129	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTAGAACTGATTATTT	NA	False	NA	16	True	AATAAA	-17	NA	29884157	29886614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_29884517_29884648_29884745_29884980_29885069_29885689
transcript_51426.known	chr16	+	653	2	FSM	ENSMUSG00000022528.9	ENSMUST00000161839.2	653	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGTCTACACCAGCAACA	NA	False	NA	NA	False	NA	NA	NA	29885155	29886137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_29885361_29885689
transcript_51427.known	chr16	-	5310	2	FSM	ENSMUSG00000052316.10	ENSMUST00000064606.8	5310	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTTCTCTGTGGAC	NA	False	NA	-1	True	AATAAA	-15	NA	30102074	30088119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_30093341_30101985
transcript_51432.nic	chr16	-	2159	11	NIC	ENSMUSG00000022537.19	novel	2505	12	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	5.46260011349907	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAACCGTCTCACGGTGG	NA	False	NA	NA	False	AATAAA	-16	NA	30369398	30332789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_30333641_30337117_30337151_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
transcript_51433.known	chr16	-	2405	10	FSM	ENSMUSG00000022537.19	ENSMUST00000140402.8	2405	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4.30618275001691	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGCTCTCGGCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	30369396	30332508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_30333641_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
transcript_51442.known	chr16	-	3180	14	FSM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	0	0	0	0	multi-exon	FALSE	canonical	2	298	junction_4	64.525303508774	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCACAGTTAAGAAGGCT	NA	False	NA	NA	False	ATTAAA	-19	NA	30406410	30379311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
transcript_51459.known	chr16	-	2360	12	FSM	ENSMUSG00000022538.21	ENSMUST00000150499.9	2360	12	0	0	0	0	multi-exon	FALSE	canonical	2	298	junction_2	69.6386185250874	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGTAGTCGACAAAACT	NA	False	NA	NA	False	NA	NA	NA	30406381	30383495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
transcript_51460.known	chr16	+	3075	1	FSM	ENSMUSG00000046546.4	ENSMUST00000059078.4	3075	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAGCCTCTGGAAATGCT	NA	False	NA	92	True	AATAAA	-23	NA	30418540	30421615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_30418500_30421600
transcript_51462.known	chr16	-	3470	4	FSM	ENSMUSG00000047434.15	ENSMUST00000055389.9	3470	4	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	21.3124898175277	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACAGTGTCTTCTGTTAT	NA	False	NA	-5	True	ATTAAA	-12	NA	30900250	30773961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_30776553_30826531_30826665_30869449_30869598_30899652
transcript_51466.nnic	chr16	-	3031	3	NNC	ENSMUSG00000047434.15	novel	3470	4	NA	NA	53033	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	92.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACAGTGTCTTCTGTTAT	NA	False	NA	-5	True	ATTAAA	-12	NA	30827212	30773961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_30776553_30826531_30826665_30826905
transcript_51470.known	chr16	-	2334	24	FSM	ENSMUSG00000049076.13	ENSMUST00000231125.2	2334	24	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_14	39.6330522162666	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTTTAACAGGGGGGAAA	NA	False	NA	NA	False	NA	NA	NA	31019809	30915163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_30915265_30920642_30920705_30922316_30922428_30923662_30923773_30924302_30924491_30925867_30925961_30926844_30927006_30928458_30928551_30929318_30929389_30929710_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30941438_30941460_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972523_30972578_30973390_30973511_30979148_30979207_31019756
transcript_51472.known	chr16	-	3414	23	FSM	ENSMUSG00000049076.13	ENSMUST00000230614.2	3414	23	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_10	14.8474334816404	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATCTTGTGTACTAT	NA	False	NA	NA	False	AATAAA	-19	NA	31019980	30914233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_30915265_30920642_30920705_30922316_30922428_30923662_30923773_30924302_30924491_30925867_30925961_30926844_30927006_30928458_30928551_30929318_30929389_30929710_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972523_30972578_30973390_30973511_30979148_30979207_31019756
transcript_51476.nic	chr16	-	1412	14	ISM	ENSMUSG00000049076.13	ENSMUST00000229010.3	2810	24	-242	15094	12	-9674	5prime_fragment	FALSE	canonical	3	119	junction_1	15.6507745994289	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAGAGAAGTTATTGAA	NA	False	NA	NA	False	AATGAA	-1	NA	31020051	30929865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972523_30972578_30973390_30973511_30979148_30979207_31019756
transcript_51477.nic	chr16	-	712	6	ISM	ENSMUSG00000049076.13	ENSMUST00000231125.2	2334	24	-311	43252	-57	-38224	5prime_fragment	FALSE	canonical	3	130	junction_1	10.571660229122	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAACGCACTAGTAAAAA	NA	False	NA	NA	False	AAAAAG	-14	NA	31020120	30958415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_30958473_30960556_30960616_30972523_30972578_30973390_30973511_30979148_30979207_31019756
transcript_51478.known	chr16	-	6515	23	FSM	ENSMUSG00000049076.13	ENSMUST00000230698.2	6515	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	34.2553910820154	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTGTAAGTGCTCCAGC	NA	False	NA	-20	True	AATAAA	-21	NA	31020063	30911229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_30915265_30920642_30920705_30922316_30922428_30923662_30923773_30924302_30924491_30925867_30925961_30926844_30927006_30928458_30928551_30929318_30929389_30929710_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972509_30972578_30973390_30973511_30979148_30979207_31019756
transcript_51479.known	chr16	-	4078	6	FSM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_1	115.541161496672	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCTTTTTAATTA	NA	False	NA	3	True	ATTAAA	-28	NA	31094095	31070354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31073552_31077154_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
transcript_51483.known	chr16	-	958	5	FSM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	0	0	0	0	multi-exon	FALSE	canonical	3	993	junction_1	34.2746261832277	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGCTTTGTTTTTTG	NA	False	NA	73	True	ATTAAA	-38	NA	31093810	31076792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
transcript_51484.nic	chr16	-	781	4	ISM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	-353	2599	-68	-2599	5prime_fragment	FALSE	canonical	3	1045	junction_3	15.6914697279198	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTCATTCATCCAGCTG	NA	False	NA	NA	False	AAGAAA	-43	NA	31094163	31079391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_31079487_31080047_31080126_31084122_31084231_31093663
transcript_51485.known	chr16	-	2074	6	FSM	ENSMUSG00000022548.15	ENSMUST00000130560.8	2074	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	47.7887015935775	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTAGCTTCCAGTTT	8496	False	NA	NA	False	NA	NA	NA	31133626	31115009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133287_31133369
transcript_51488.known	chr16	-	979	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTGCTAGCCCAATAAT	8710	False	NA	-38	True	NA	NA	NA	31133412	31115973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
transcript_51489.known	chr16	-	1070	5	FSM	ENSMUSG00000022548.15	ENSMUST00000115230.2	1070	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	68.1725751310598	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	8500	False	NA	-4	True	AATAAA	-12	NA	31133622	31115939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133369
transcript_51495.known	chr16	+	3162	8	FSM	ENSMUSG00000046598.16	ENSMUST00000232433.2	3162	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	227.277588074179	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTCGCAGAGTGGCTTG	NA	False	NA	13	True	AATAAA	-13	NA	31247609	31277715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_31247806_31256809_31256936_31264163_31264252_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
transcript_51497.known	chr16	+	1711	7	FSM	ENSMUSG00000046598.16	ENSMUST00000089759.9	1711	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	185.763888369678	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGTGCATGAAA	5509	False	NA	25	True	AGTAAA	-15	NA	31241097	31276315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_31241331_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
transcript_51502.known	chr16	+	3122	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGCAGAGTGGCTTGGAAT	NA	False	NA	17	True	AATAAA	-17	NA	31247565	31277719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
transcript_51510.known	chr16	-	1901	1	FSM	ENSMUSG00000086645.3	ENSMUST00000182690.2	1901	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGTCACATGACTTTAAT	NA	False	NA	NA	False	AATAAA	-14	NA	31248594	31246693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31246700_31248600
transcript_51521.known	chr16	+	4663	26	FSM	ENSMUSG00000022770.18	ENSMUST00000064477.14	4663	26	0	0	0	0	multi-exon	FALSE	canonical	1	100	junction_1	67.3545841053154	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATGTTAAATGTGTCT	NA	False	NA	16	True	AATAAA	-14	NA	31482856	31692164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_31483140_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
transcript_5153.nic	chr1	+	755	5	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	34	46234	34	8206	5prime_fragment	FALSE	canonical	3	468	junction_4	40.3693881548879	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTAATATTGGTTCCCA	NA	False	NA	NA	False	NA	NA	NA	150269034	150279452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348
transcript_51545.known	chr16	+	4133	16	FSM	ENSMUSG00000022780.6	ENSMUST00000023464.6	4133	16	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	1.29957257930786	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTGCCACCTGACTCAA	1725	False	NA	NA	False	AATAAA	-45	NA	31697627	31717838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_31697794_31698940_31699096_31700685_31700786_31702578_31702762_31703761_31703919_31705017_31705086_31706229_31706418_31706927_31707109_31707695_31707848_31709533_31709631_31710384_31710580_31711303_31711461_31711557_31711626_31713508_31713697_31715246_31715446_31715959
transcript_5155.known	chr1	-	665	5	FSM	ENSMUSG00000006010.15	ENSMUST00000150615.8	665	5	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_4	16.140012391569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATCCACAGTTCTTTCCT	965	False	NA	NA	False	NA	NA	NA	150268499	150260032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
transcript_51551.known	chr16	-	1445	1	FSM	ENSMUSG00000107002.2	ENSMUST00000202722.2	1445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	31767312	31765867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31765900_31767300
transcript_51552.known	chr16	-	3370	10	FSM	ENSMUSG00000022772.13	ENSMUST00000023457.13	3370	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	18.3168275866621	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTGGATTTTTTTTTC	NA	False	NA	NA	False	CATAAA	-22	NA	31821981	31781323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821813
transcript_51559.nic	chr16	-	2289	7	NIC	ENSMUSG00000022772.13	novel	1993	6	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	18.8826787176914	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTAAAGGTTTTTAATT	NA	False	NA	NA	False	ATTAAA	-15	NA	31821993	31794639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_31794848_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821809
transcript_5156.nic	chr1	+	655	4	ISM	ENSMUSG00000006005.19	ENSMUST00000124973.9	7430	52	-41	51186	-41	3134	5prime_fragment	FALSE	canonical	3	82	junction_1	222.532893948038	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAGAACTGGAAACTGCT	NA	False	NA	NA	False	AGTAAA	-18	NA	150268547	150274380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150268765_150269106_150269410_150270949_150271055_150274350
transcript_51563.known	chr16	+	2070	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTCTATTTCCTCGC	NA	False	NA	4	True	AATAAA	-15	NA	31767330	31777290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
transcript_51569.known	chr16	-	5741	15	FSM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_8	23.9404021925877	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAATTTCCATTTTTGTC	NA	False	NA	-10	True	AATAAA	-22	NA	31898160	31835107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31839085_31840591_31840730_31841906_31842104_31846529_31846630_31850401_31850520_31852604_31852718_31853712_31853762_31856062_31856127_31858616_31858750_31860285_31860394_31861963_31861996_31862670_31862819_31863298_31863400_31870993_31871202_31897905
transcript_5157.nic	chr1	+	726	4	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	-95	47638	-95	6802	5prime_fragment	FALSE	canonical	3	520	junction_2	28.9942523039768	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGATTTAATCAGAACCAAT	NA	False	NA	NA	False	NA	NA	NA	150268905	150278048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005
transcript_51575.nic	chr16	-	1054	8	ISM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	-34	20984	-34	-4189	5prime_fragment	FALSE	canonical	3	184	junction_1	19.1971511491913	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACACAAGATATGAAAAAAT	NA	False	NA	NA	False	AAGAAA	-4	NA	31898194	31856091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_31856127_31858616_31858750_31860285_31860394_31861963_31861996_31862670_31862819_31863298_31863400_31870993_31871202_31897905
transcript_51576.nic	chr16	-	982	7	ISM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	-34	23546	-34	-6751	5prime_fragment	FALSE	canonical	3	210	junction_5	13.5615879109589	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAAGATGACCGATGAAGA	NA	False	NA	NA	False	AAAAAG	-4	NA	31898194	31858653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_31858750_31860285_31860394_31861963_31861996_31862670_31862819_31863298_31863400_31870993_31871202_31897905
transcript_51577.nic	chr16	-	496	2	ISM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	-34	35887	-34	-19092	5prime_fragment	FALSE	canonical	3	250	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAATAGCTGCTATAATT	NA	False	NA	-2	True	NA	NA	NA	31898194	31870994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_31871202_31897905
transcript_5158.nic	chr1	+	651	4	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	34	47584	34	6856	5prime_fragment	FALSE	canonical	3	520	junction_2	28.9942523039768	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATGAAAAAAATAACTGTG	NA	False	NA	NA	False	NA	NA	NA	150269034	150278102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005
transcript_51580.nic	chr16	-	1188	7	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_5	171.687377391454	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTTAGTTTGTCTTCA	NA	False	NA	-2	True	AATAAA	-28	NA	31918589	31903235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31914370_31914527_31915817_31915882_31918287
transcript_51582.known	chr16	-	963	6	FSM	ENSMUSG00000023791.19	ENSMUST00000155966.8	963	6	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	129.408500493592	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGCTCTTTTCAGAACT	NA	False	NA	-22	True	AATAAA	-8	NA	31918546	31903255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
transcript_51583.known	chr16	-	818	6	FSM	ENSMUSG00000023791.19	ENSMUST00000232321.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	141.720287891325	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTAGTTTGTCTTCATT	NA	False	NA	0	True	AATAAA	-30	NA	31918558	31903233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918472
transcript_51585.nnic	chr16	-	954	5	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	167.537309277665	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTTAGTTTGTCTTCA	NA	False	NA	-2	True	AATAAA	-28	NA	31918575	31903235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31918287
transcript_51587.known	chr16	-	713	5	FSM	ENSMUSG00000023791.19	ENSMUST00000147688.8	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	176.233332545237	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAACCTAATAAATGAGAC	NA	False	NA	-43	True	NA	NA	NA	31918525	31903276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31915817_31915882_31918287
transcript_51593.known	chr16	-	675	4	FSM	ENSMUSG00000023791.19	ENSMUST00000143011.8	675	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	202.902822936389	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	False	NA	-8	True	AATAAA	-22	NA	31918522	31903241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31918293
transcript_51594.known	chr16	+	1718	4	FSM	ENSMUSG00000035790.16	ENSMUST00000115168.9	1718	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.96655480858378	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGCTTTTCTTCAGTCTG	6492	False	NA	26	True	AATAAA	-26	NA	31918617	31926887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_31918930_31921784_31921863_31922701_31922866_31925723
transcript_51595.known	chr16	-	805	4	FSM	ENSMUSG00000052384.15	ENSMUST00000130410.8	805	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.02768199119819	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGAAGACATGGCGGCTCT	NA	False	NA	NA	False	NA	NA	NA	31984412	31963499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31963824_31966370_31966492_31982070_31982216_31984197
transcript_51596.known	chr16	-	360	3	FSM	ENSMUSG00000052384.15	ENSMUST00000150250.2	360	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCACTACGCCTTCCGAG	NA	False	NA	NA	False	NA	NA	NA	31966936	31963644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31963824_31966370_31966492_31966876
transcript_51597.known	chr16	-	2548	3	FSM	ENSMUSG00000052384.15	ENSMUST00000099991.11	2548	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCTTGTGTAATGTCCT	NA	False	NA	NA	False	AATAAA	-33	NA	31984403	31961602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_31963824_31966370_31966492_31984197
transcript_51598.known	chr16	-	4179	3	FSM	ENSMUSG00000035764.6	ENSMUST00000042732.6	4179	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	4	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGGTAGTCCATGTCA	7823	False	NA	2	True	ATTAAA	-17	NA	32065976	32048929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_32052087_32057217_32057575_32065311
transcript_51599.known	chr16	-	144	1	FSM	ENSMUSG00000080440.3	ENSMUST00000116790.3	144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGGTTTTTGTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	32062673	32062529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_32062500_32062700
transcript_51600.known	chr16	+	1153	3	FSM	ENSMUSG00000022787.11	ENSMUST00000178573.8	1153	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	36.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCAACAGTAATTTTG	NA	False	NA	9	True	AATAAA	-10	NA	32066044	32075892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32066086_32070640_32071137_32075276
transcript_51601.known	chr16	+	1394	3	FSM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	52	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAATTTTGGTTTTTTTT	NA	False	NA	18	True	AATAAA	-19	NA	32066070	32075901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32066344_32070640_32071137_32075276
transcript_51608.known	chr16	+	4460	6	FSM	ENSMUSG00000014074.18	ENSMUST00000171474.2	4460	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	6.9108610172684	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAATTGGCTCTCATG	NA	False	NA	NA	False	ATTAAA	-10	NA	32096278	32120252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936_32108059_32110720_32110800_32117205
transcript_5161.nic	chr1	+	534	3	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	10	51306	10	3134	5prime_fragment	FALSE	canonical	3	520	junction_2	31	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAGAACTGGAAACTGCT	NA	False	NA	NA	False	AGTAAA	-18	NA	150269010	150274380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_150269410_150270949_150271055_150274350
transcript_51616.nic	chr16	+	1335	4	ISM	ENSMUSG00000014074.18	ENSMUST00000014218.15	3932	6	-20	11685	-18	27	5prime_fragment	FALSE	canonical	3	16	junction_3	3.09120616516523	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTGGAGATATTCAAAAG	NA	False	NA	NA	False	AGTAAA	-8	NA	32096258	32108039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936
transcript_51617.nic	chr16	+	1871	4	ISM	ENSMUSG00000014074.18	ENSMUST00000014218.15	3932	6	-20	11149	-18	563	5prime_fragment	FALSE	canonical	3	16	junction_3	3.09120616516523	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAGCTAGAGAGATGGT	NA	False	NA	NA	False	AAAACA	-11	NA	32096258	32108575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936
transcript_51619.nic	chr16	+	1164	3	ISM	ENSMUSG00000014074.18	ENSMUST00000155649.8	1249	4	-18	3713	-18	-3713	5prime_fragment	TRUE	canonical	3	22	junction_2	0.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGTGAGATGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	32096258	32104299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_32097234_32101128_32101206_32104187
transcript_5162.known	chr1	+	572	2	FSM	ENSMUSG00000006005.19	ENSMUST00000131701.2	572	2	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCCAAAATTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	150269134	150271246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_150269410_150270949
transcript_51621.known	chr16	+	1249	4	FSM	ENSMUSG00000014074.18	ENSMUST00000155649.8	1249	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10.6144555520604	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAGAAAAATACAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	32096276	32108012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107977
transcript_51624.known	chr16	+	10313	11	FSM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_8	18.7480665669823	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTTTGAGTCATTGTT	8252	False	NA	16	True	AATAAA	-18	NA	32151074	32212565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
transcript_51629.nic	chr16	+	1361	10	ISM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	-60	11940	-60	-6088	5prime_fragment	FALSE	canonical	3	131	junction_8	19.6129209111409	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAACAGATCACTCTTCCA	8192	False	NA	NA	False	NA	NA	NA	32151014	32200625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583
transcript_51630.known	chr16	+	4384	10	FSM	ENSMUSG00000053774.10	ENSMUST00000232137.2	4384	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	51.2071561357021	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGCCTTGTGTGCTGT	8263	False	NA	NA	False	NA	NA	NA	32151085	32206713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
transcript_51633.known	chr16	+	369	2	FSM	ENSMUSG00000053774.10	ENSMUST00000232016.2	369	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTTCTGTGGAAGATT	8252	False	NA	NA	False	TTTAAA	-16	NA	32151074	32171881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32151179_32171616
transcript_51634.known	chr16	+	2537	3	FSM	ENSMUSG00000053774.10	ENSMUST00000232666.2	2537	3	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAGAAAAAGAAATAAAA	8260	False	NA	NA	False	NA	NA	NA	32151082	32181118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32151179_32171616_32171765_32178825
transcript_51637.nnic	chr16	+	855	6	NNC	ENSMUSG00000014075.16	novel	838	5	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	122.726688214096	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGTCATGAATAGTTTT	NA	False	NA	5	True	AATAAA	-17	NA	32238586	32247913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_32238746_32241637_32241772_32244058_32244129_32244971_32245060_32245675_32245740_32247573
transcript_5164.known	chr1	+	7430	52	FSM	ENSMUSG00000006005.19	ENSMUST00000124973.9	7430	52	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_1	100.054291298415	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATTGACGAATCTGTTT	NA	False	NA	-95	True	AATAGA	-44	NA	150268588	150325566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_150268765_150269106_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
transcript_51640.known	chr16	+	838	5	FSM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_3	20.9568008054665	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGAATAGTTTTTATG	NA	False	NA	9	True	AATAAA	-21	NA	32238519	32247917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32238746_32241637_32241772_32244058_32244129_32245675_32245740_32247573
transcript_51645.known	chr16	+	720	4	FSM	ENSMUSG00000014075.16	ENSMUST00000080316.8	720	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	127.027556065603	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGTCATGAATAGTTTT	NA	False	NA	5	True	AATAAA	-17	NA	32238563	32247913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32238746_32241637_32241772_32245675_32245740_32247573
transcript_51648.known	chr16	+	4789	9	FSM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	11.3880419739304	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCTGTGGTTTTGACC	2489	False	NA	22	True	AATAAA	-27	NA	32249741	32293888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868_32289058_32290114
transcript_51653.known	chr16	-	2618	9	FSM	ENSMUSG00000035699.9	ENSMUST00000042042.9	2618	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	5.50993421013355	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTCTTTGAACTGTGT	NA	False	NA	NA	False	TTTAAA	-34	NA	32306697	32293321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32297533_32297608_32298467_32298623_32304952_32305048_32306302
transcript_51663.known	chr16	+	4890	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCGGACTCATTTCATA	7957	False	NA	18	True	AATAAA	-19	NA	32427737	32451612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
transcript_51666.nic	chr16	+	5202	19	NIC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	103.023085630549	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTTGTCGGACTCATTT	7961	False	NA	14	True	AATAAA	-15	NA	32427741	32451608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_32428175_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
transcript_51675.known	chr16	+	4516	16	FSM	ENSMUSG00000022791.20	ENSMUST00000115124.9	4516	16	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_11	42.4157203561761	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGCGTGCCCGCCTGTT	NA	False	NA	26	True	AATAAA	-22	NA	32463398	32502311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32463927_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32497486_32497532_32498276_32499626_32499717_32499814_32499969_32500098_32501502
transcript_51682.known	chr16	+	4226	15	FSM	ENSMUSG00000022791.20	ENSMUST00000115123.9	4226	15	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	34.8270508281674	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGCGTGCCCGCCTGTT	NA	False	NA	26	True	AATAAA	-22	NA	32463643	32502311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32463927_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499717_32499814_32499969_32500098_32501502
transcript_51685.nic	chr16	+	4118	15	NIC	ENSMUSG00000022791.20	novel	4049	15	NA	NA	-18	0	intron_retention	FALSE	canonical	1	1	junction_1	45.5893381735471	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTCGCGTGCCCGCCTGT	6211	False	NA	25	True	AATAAA	-21	NA	32477724	32502310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_32477901_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499717_32499814_32499969_32500098_32501502
transcript_51692.known	chr16	+	4313	14	FSM	ENSMUSG00000022791.20	ENSMUST00000115125.8	4313	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	42.5358880846272	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGCGTGCCCGCCTGTT	NA	False	NA	26	True	AATAAA	-22	NA	32463460	32502311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32463927_32482556_32482738_32484703_32484775_32487038_32487261_32488204_32488358_32488770_32489049_32489609_32489737_32490112_32490260_32490356_32490452_32494339_32494535_32496711_32496804_32498276_32499626_32499969_32500098_32501502
transcript_51694.known	chr16	-	5257	19	FSM	ENSMUSG00000035629.20	ENSMUST00000040986.15	5257	19	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_16	7.31732258934531	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCTTTTATTTACCTG	NA	False	NA	-35	True	AATAAA	-15	NA	32688721	32642097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_32644517_32644748_32644843_32645933_32646088_32646504_32646567_32647054_32647294_32647657_32647723_32648228_32648375_32649038_32649172_32649634_32649693_32656283_32656386_32656779_32656991_32658607_32658724_32663367_32663902_32664916_32665077_32667586_32667694_32668199_32668360_32670047_32670132_32677261_32677416_32688462
transcript_51695.known	chr16	-	3371	19	FSM	ENSMUSG00000035629.20	ENSMUST00000119810.2	3371	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_18	16.139151843335	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTTGTCTGCTGTCCAA	NA	False	NA	NA	False	AATATA	-19	NA	32698136	32644228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_32644517_32644748_32644843_32645933_32646088_32646504_32646567_32647054_32647294_32647657_32647723_32648228_32648375_32649038_32649172_32649634_32649693_32656283_32656386_32656779_32656991_32658607_32658724_32663367_32663902_32664916_32665077_32667586_32667694_32668199_32668360_32670047_32670132_32677261_32677416_32697632
transcript_51703.known	chr16	+	4312	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAAGAATTCCATATAT	NA	False	NA	NA	False	ATTAAA	-14	NA	32698150	32729245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
transcript_51707.known	chr16	+	2262	8	FSM	ENSMUSG00000022800.15	ENSMUST00000232300.2	2262	8	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_4	66.7529713471503	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTTGACTTCTGTCCT	NA	False	NA	15	True	AATAAA	-22	NA	32698176	32726814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32719310_32721002_32721078_32722788_32722916_32725901
transcript_51713.known	chr16	+	634	4	FSM	ENSMUSG00000022800.15	ENSMUST00000149183.8	634	4	0	0	0	0	multi-exon	FALSE	canonical	3	607	junction_2	35.0460015154685	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTTGCTGTGCCAGAGT	NA	False	NA	65	True	NA	NA	NA	32698182	32715626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454
transcript_51719.known	chr16	+	5536	21	FSM	ENSMUSG00000022801.14	ENSMUST00000023491.13	5536	21	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_20	10.2853050513828	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTTTTCTTGCCAGAG	NA	False	NA	16	True	AATAAA	-25	NA	32734469	32836017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32734774_32770661_32770807_32772426_32772554_32775669_32775776_32779764_32779902_32782004_32782115_32794249_32794344_32796098_32796220_32799765_32799915_32802197_32802275_32806345_32806398_32807108_32807259_32808800_32808852_32810634_32810689_32814131_32814204_32815317_32815367_32816175_32816284_32817751_32817859_32818873_32819012_32826033_32826112_32832710
transcript_51728.known	chr16	-	5618	11	FSM	ENSMUSG00000035578.17	ENSMUST00000115100.9	5618	11	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_9	25.6242073048124	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGTGGAAACGGGTTTAA	1172	False	NA	NA	False	ATTAAA	-8	NA	32876560	32833052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32865889_32866072_32870221_32870484_32873993_32874065_32876520
transcript_51733.nnic	chr16	-	1309	8	NNC	ENSMUSG00000035578.17	novel	5618	11	NA	NA	6358	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_7	7.43406390357582	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCACCTAGCATCATGTG	6078	False	NA	2	True	ATTAAA	-29	NA	32863882	32836989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32863699
transcript_51737.known	chr16	-	442	4	FSM	ENSMUSG00000035578.17	ENSMUST00000133219.2	442	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	27.6043474836845	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGAAGTAACCAGTTTC	NA	False	NA	NA	False	GATAAA	-43	NA	32844307	32837319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_32837434_32839810_32839913_32840883_32841016_32844213
transcript_51738.known	chr16	+	491	5	FSM	ENSMUSG00000060636.15	ENSMUST00000078804.12	491	5	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	2402.68870226669	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTCTCTTTGTTAAG	NA	False	NA	34	True	AATAAA	-45	NA	32876822	32880559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32876881_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_51739.known	chr16	+	510	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115079.8	510	5	0	0	0	0	multi-exon	FALSE	canonical	3	3184	junction_1	2675.04705566089	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTCCTAAATTGAGTT	NA	False	NA	21	True	AATAAA	-36	NA	32876835	32880546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32876926_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_51740.known	chr16	+	500	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115078.8	500	5	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	3609.33805392346	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32876896	32880535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32876988_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_51741.known	chr16	+	519	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115076.8	519	5	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	3846.56847072816	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	20	True	AATAAA	-35	NA	32877175	32880545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32877276_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_51747.known	chr16	+	2858	3	FSM	ENSMUSG00000060636.15	ENSMUST00000133785.2	2858	3	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	3305	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	20	True	AATAAA	-35	NA	32876851	32880545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32876881_32877505_32877549_32877759
transcript_51751.known	chr16	+	518	4	FSM	ENSMUSG00000060636.15	ENSMUST00000115075.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	8092	junction_3	1051.6733755729	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTGTATTTTTTTTTCA	NA	False	NA	1	True	AATAAA	-16	NA	32877387	32880526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32877549_32877759_32877913_32879048_32879194_32880467
transcript_51752.known	chr16	+	6147	17	FSM	ENSMUSG00000022802.3	ENSMUST00000023497.3	6147	17	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_12	4.16645832812474	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTAGCTTGTCTTTACCT	4779	False	NA	NA	False	AATAAA	-14	NA	32882890	32948065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_32883105_32886680_32886779_32887655_32887687_32889410_32889494_32890250_32890369_32894374_32894554_32901300_32901407_32903388_32903484_32908471_32908590_32909634_32909743_32911655_32911733_32917270_32917382_32925078_32925212_32927383_32927544_32930147_32930279_32937370_32937582_32943891
transcript_51759.known	chr16	+	4475	13	FSM	ENSMUSG00000022807.10	ENSMUST00000232100.2	4475	13	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_5	9.04118662320138	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGTGTTGGGAAAATTG	NA	False	NA	-41	True	AATAAA	-19	NA	33005440	33063636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_33006371_33016443_33016513_33025041_33025218_33026292_33026373_33030295_33030473_33034711_33034914_33037083_33037230_33044909_33045051_33047226_33047726_33049331_33049519_33054792_33054976_33056624_33056779_33062105
transcript_5177.known	chr1	+	3315	15	FSM	ENSMUSG00000023150.15	ENSMUST00000186745.2	3315	15	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	304.179802157895	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTTAAGAACCCCAAAC	NA	False	NA	NA	False	NA	NA	NA	151220328	151239116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
transcript_51775.known	chr16	+	3161	14	FSM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_8	41.4737387501677	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGTGATAAGGTTTTTT	9283	False	NA	NA	False	NA	NA	NA	33071813	33120639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
transcript_51783.nic	chr16	+	886	9	ISM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	-55	14257	-53	-13553	5prime_fragment	FALSE	canonical	3	473	junction_8	44.02556075736	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGGATGGGCTGCAGAGT	9228	False	NA	NA	False	AAAAAG	-4	NA	33071758	33106382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356
transcript_51787.known	chr16	-	665	2	FSM	ENSMUSG00000097318.3	ENSMUST00000231849.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAATTCTCTCCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	33201045	33200223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_33200729_33200885
transcript_51788.known	chr16	-	737	2	FSM	ENSMUSG00000097318.3	ENSMUST00000180923.2	737	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTGGAATTCTCTCCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	33201097	33200224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_33200750_33200885
transcript_51789.known	chr16	+	9830	9	FSM	ENSMUSG00000022811.18	ENSMUST00000165418.9	9830	9	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_3	9.03811374126261	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAAAGCTGAAACAGCTG	NA	False	NA	NA	False	TTTAAA	-33	NA	33201205	33324733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_33201398_33241690_33241773_33247563_33247700_33254995_33255345_33277245_33277372_33287224_33287349_33288469_33288554_33315714_33315834_33316115
transcript_51798.known	chr16	+	2670	8	FSM	ENSMUSG00000022811.18	ENSMUST00000232023.2	2670	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	51.6024837244353	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTAAATAATACTGGCAC	NA	False	NA	NA	False	NA	NA	NA	33201232	33317726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_33201398_33241690_33241773_33247563_33247700_33254995_33255345_33287224_33287349_33288469_33288554_33315714_33315834_33316115
transcript_5180.known	chr1	+	3511	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	0	0	0	0	multi-exon	TRUE	canonical	3	1145	junction_2	98.7764172879585	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTGTGGGATTTAATGT	NA	False	NA	17	True	ATTAAA	-21	NA	151220227	151240173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
transcript_51807.known	chr16	+	2656	14	FSM	ENSMUSG00000035506.17	ENSMUST00000121925.8	2656	14	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	11.5650974613248	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTATTTTTTATTATT	NA	False	NA	9	True	AATAAA	-19	NA	33337697	33483778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
transcript_51809.nnic	chr16	+	2588	14	NNC	ENSMUSG00000035506.17	novel	3166	13	NA	NA	173	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	17.0512627723045	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTATTTTTTATTATT	NA	False	NA	9	True	AATAAA	-19	NA	33337870	33483778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_33337971_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
transcript_51810.nic	chr16	+	2467	13	NIC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	42	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_8	17.7080882335979	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTATTTTTTATTATT	NA	False	NA	9	True	AATAAA	-19	NA	33337739	33483778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
transcript_51811.nnic	chr16	+	2506	13	NIC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	36	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_5	14.3611648397877	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTATTTTTTATTATT	NA	False	NA	9	True	AATAAA	-19	NA	33337733	33483778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
transcript_51816.known	chr16	+	3294	4	FSM	ENSMUSG00000075254.13	ENSMUST00000154863.2	3294	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAGAAAAAAAAAG	6919	False	NA	NA	False	NA	NA	NA	33504835	33543283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_33505226_33530769_33531070_33539876_33540216_33541018
transcript_51819.known	chr16	+	3056	15	FSM	ENSMUSG00000022817.16	ENSMUST00000069345.6	3056	15	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_14	52.8724398714414	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGATTACTGGTTCCCT	NA	False	NA	22	True	AATAAA	-23	NA	33650046	33769523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_33650401_33665355_33665442_33685817_33686023_33696171_33696422_33705322_33705492_33719610_33719773_33720879_33720976_33723163_33723254_33730834_33730970_33740154_33740585_33760859_33761083_33764473_33764575_33766860_33766981_33768084_33768223_33769026
transcript_51820.known	chr16	+	3282	15	FSM	ENSMUSG00000022817.16	ENSMUST00000115028.11	3282	15	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	15.8688823983111	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAACTTTGTGTTGGCTTTG	NA	False	NA	NA	False	AAAAAG	-17	NA	33650034	33769708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_33650401_33665355_33665442_33685817_33686023_33696171_33696422_33705322_33705492_33719610_33719773_33720879_33720976_33723163_33723254_33730834_33730970_33740154_33740585_33760859_33761083_33764473_33764575_33766860_33766981_33768084_33768252_33769026
transcript_51822.known	chr16	+	2130	11	FSM	ENSMUSG00000022817.16	ENSMUST00000232262.2	2130	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	64.2492023296788	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGATTACTGGTTCCCT	NA	False	NA	22	True	AATAAA	-23	NA	33712310	33769523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_33712420_33719610_33719773_33720879_33720976_33723163_33723254_33730834_33730970_33740154_33740585_33760859_33761083_33764473_33764575_33766860_33766981_33768084_33768252_33769026
transcript_51829.known	chr16	-	3484	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGTCTCCTGCCTCT	8640	False	NA	NA	False	NA	NA	NA	33787408	33775151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
transcript_51832.known	chr16	-	3283	5	FSM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	482.354123025812	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAACATCCTCTGTAG	8675	False	NA	NA	False	NA	NA	NA	33787373	33775163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33787195
transcript_51848.nic	chr16	-	3068	19	NIC	ENSMUSG00000061751.17	novel	7636	49	NA	NA	-12570	0	combination_of_known_junctions	FALSE	canonical	1	7	junction_16	9.06236962443469	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGTTTTAATGAGGTCA	NA	False	NA	-10	True	AATAAA	-12	NA	33996219	33833515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_33834052_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33936591_33936836_33991641_33991745_33994754_33994898_33996098
transcript_51850.known	chr16	-	3857	17	FSM	ENSMUSG00000061751.17	ENSMUST00000114966.8	3857	17	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_13	10.0343161201947	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAGGTCAAAGGTTAGT	NA	False	NA	-1	True	AATAAA	-21	NA	33917460	33833506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_33834052_33834327_33834585_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33870199_33870293_33873929_33874035_33875201_33875486_33916165
transcript_51851.known	chr16	-	2690	16	FSM	ENSMUSG00000061751.17	ENSMUST00000232157.2	2690	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	6.74157910944379	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGTTTTAATGAGGTCA	NA	False	NA	-10	True	AATAAA	-12	NA	33916398	33833515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_33834052_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33916165
transcript_51854.known	chr16	-	615	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	217	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	33827827	33827212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_33827200_33827800
transcript_51857.known	chr16	+	3999	13	FSM	ENSMUSG00000022833.8	ENSMUST00000231609.2	3999	13	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_6	18.9487613198213	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTACTTATTTTGA	NA	False	NA	15	True	AATATA	-24	NA	34511101	34545572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34525198_34525418_34525530_34525626_34526756_34527268_34529893_34530036_34535707_34535779_34541808_34542028_34542106_34542240_34543379
transcript_51862.nic	chr16	+	1766	11	ISM	ENSMUSG00000022833.8	ENSMUST00000023532.7	4107	13	-62	3622	-62	-2995	5prime_fragment	FALSE	canonical	3	110	junction_6	18.3654567054566	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACCACTTTATTTAAAGA	NA	False	NA	NA	False	AAAACA	-6	NA	34510923	34541942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34525198_34525418_34525530_34525626_34526756_34527268_34529893_34530036_34535707_34535779_34541808
transcript_51867.known	chr16	+	3156	9	FSM	ENSMUSG00000022833.8	ENSMUST00000232489.2	3156	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_6	18.5050668736971	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATTTGTTAGATATGTT	NA	False	NA	NA	False	NA	NA	NA	34511079	34531786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34525198_34525418_34525530_34525626_34526756_34527268_34529893
transcript_51869.known	chr16	+	801	6	FSM	ENSMUSG00000022836.12	ENSMUST00000231998.2	801	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.26491106406735	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGGCTGCCTTCAGTTCT	5503	False	NA	NA	False	NA	NA	NA	34750711	34784216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_34750790_34759295_34759383_34773148_34773200_34773948_34774077_34776752_34776907_34783913
transcript_51873.known	chr16	+	3598	7	FSM	ENSMUSG00000035376.11	ENSMUST00000061156.10	3598	7	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_3	97.2996517065823	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGATCTGGAGCCATGT	NA	False	NA	NA	False	AATAAA	-20	NA	34842797	34929547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920125_34920248_34922315_34922495_34926684
transcript_51880.known	chr16	+	389	3	FSM	ENSMUSG00000035376.11	ENSMUST00000231516.2	389	3	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_2	58	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAGCTTGATTTGATT	NA	False	NA	NA	False	AATACA	-19	NA	34842799	34869154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_34843006_34846194_34846313_34869089
transcript_51884.known	chr16	-	3992	7	FSM	ENSMUSG00000034473.15	ENSMUST00000043521.5	3992	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	6.0736223860962	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAACCTTTGCCCACTTT	NA	False	NA	NA	False	ATTAAA	-33	NA	35184288	35131500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200_35169365_35181930_35182130_35184193
transcript_51890.nnic	chr16	-	1383	5	NIC	ENSMUSG00000034473.15	novel	3992	7	NA	NA	-30	653	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	36.3077126792642	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGGTCTTCCAAATTC	NA	False	NA	-23	True	AATACA	-14	NA	35184318	35133780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_35134658_35139173_35139240_35149867_35149984_35181930_35182130_35184193
transcript_51894.known	chr16	-	1809	17	FSM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	56.9566378374812	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311243	35217681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311098
transcript_51895.nnic	chr16	-	1750	17	NNC	ENSMUSG00000022844.9	novel	1809	17	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_16	132.890697567587	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311275	35217681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311189
transcript_51908.known	chr16	+	4350	22	FSM	ENSMUSG00000052133.17	ENSMUST00000050625.15	4350	22	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_14	8.19767125828774	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTTTGTGCATATGTGT	NA	False	NA	26	True	ATTAAA	-26	NA	35361940	35484631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35361973_35442946_35443151_35448379_35448480_35453184_35453231_35465752_35465816_35466081_35466181_35466561_35466776_35467413_35467700_35470101_35470238_35471506_35471715_35471849_35472058_35478566_35478685_35478809_35478992_35480019_35480164_35480292_35480441_35480527_35480754_35480849_35481069_35481661_35481833_35481935_35482086_35482659_35482705_35483062_35483269_35483486
transcript_51910.known	chr16	+	4646	21	FSM	ENSMUSG00000052133.17	ENSMUST00000120756.8	4646	21	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_14	8.33591626637408	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTTTGTGCATATGTGT	NA	False	NA	26	True	ATTAAA	-26	NA	35361731	35484631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35361973_35442946_35443151_35448379_35448480_35453184_35453231_35465752_35465816_35466081_35466181_35466561_35466776_35467413_35467700_35470101_35470238_35471506_35471715_35471849_35472058_35478566_35478685_35478809_35478992_35480019_35480164_35480292_35480754_35480849_35481069_35481661_35481833_35481935_35482086_35482659_35482705_35483062_35483269_35483486
transcript_51914.known	chr16	-	5395	9	FSM	ENSMUSG00000022848.9	ENSMUST00000023554.9	5395	9	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_5	11.439378261077	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAATGTTAAAAATCACAT	NA	False	NA	NA	False	AATAAA	-24	NA	35589726	35514431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_35518391_35525123_35525307_35539681_35539810_35543122_35543191_35550655_35550765_35554306_35554437_35555755_35556022_35570865_35570960_35589268
transcript_51919.known	chr16	+	4680	9	FSM	ENSMUSG00000022849.6	ENSMUST00000023555.6	4680	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	251.189669373563	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCTTTAATTAATGGAT	5436	False	NA	NA	False	AATAAA	-45	NA	35590776	35648847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35634699_35634780_35637521_35637694_35639048_35639133_35645058_35645170_35645252
transcript_51922.known	chr16	+	1703	8	FSM	ENSMUSG00000022849.6	ENSMUST00000231579.2	1703	8	0	0	0	0	multi-exon	TRUE	canonical	3	531	junction_3	35.6118531058502	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCAGCCACTTCCAAAT	5404	False	NA	107	True	NA	NA	NA	35590744	35645918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
transcript_51932.known	chr16	+	5212	3	FSM	ENSMUSG00000022849.6	ENSMUST00000231802.2	5212	3	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_1	24	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACATAAAATAAAAATAAATC	5436	False	NA	NA	False	NA	NA	NA	35590776	35626799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35590910_35607559_35607746_35621906
transcript_51936.known	chr16	+	5039	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACAGGTTTTCCTTGGG	NA	False	NA	26	True	AATAAA	-39	NA	35803684	35857501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
transcript_5194.known	chr1	+	3337	14	FSM	ENSMUSG00000023150.15	ENSMUST00000097543.8	3337	14	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	362.778266997786	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCTTGCACTGTGGGAT	NA	False	NA	10	True	ATTAAA	-14	NA	151220268	151240166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
transcript_51948.known	chr16	+	3548	11	FSM	ENSMUSG00000022906.16	ENSMUST00000114878.8	3548	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	7.49399759807808	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTGTGAATCGTGAATG	NA	False	NA	13	True	AATAAA	-19	NA	35758839	35792975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35759431_35761402_35761506_35763738_35763773_35767870_35768725_35773932_35774149_35777176_35777396_35780373_35780432_35784344_35784735_35788019_35788157_35789960_35790136_35792204
transcript_51954.known	chr16	-	5309	5	FSM	ENSMUSG00000049502.18	ENSMUST00000081933.14	5309	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	7.25861557047899	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTCCCTCATTC	9994	False	NA	6	True	AATAAA	-24	NA	35759521	35746880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_35749739_35751742_35751961_35752645_35754170_35756746_35756998_35759063
transcript_51956.known	chr16	+	2664	3	FSM	ENSMUSG00000022905.13	ENSMUST00000173715.2	2664	3	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAGAAACTTATCTG	NA	False	NA	NA	False	NA	NA	NA	35803694	35825558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35803879_35820551_35820686_35823212
transcript_51957.known	chr16	-	2649	3	FSM	ENSMUSG00000049502.18	ENSMUST00000114885.3	2649	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	10	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCTCATGTCTTTTTA	9994	False	NA	NA	False	NA	NA	NA	35759521	35752229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_35754170_35756746_35756998_35759063
transcript_51961.known	chr16	-	640	5	FSM	ENSMUSG00000003955.9	ENSMUST00000231351.2	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	448.847621693599	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTCTTTGTTTTGTT	NA	False	NA	-5	True	AATACA	-14	NA	35891739	35864215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891686
transcript_51962.known	chr16	-	718	5	FSM	ENSMUSG00000003955.9	ENSMUST00000004057.9	718	5	0	0	0	0	multi-exon	FALSE	canonical	3	971	junction_1	40.7982842776507	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATAGTATTATCTCTTC	NA	False	NA	80	True	NA	NA	NA	35891885	35864130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
transcript_51965.known	chr16	+	1073	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTATTTGGTGACTTT	NA	False	NA	25	True	ATTAAA	-22	NA	35892054	35912490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
transcript_51966.known	chr16	+	391	4	FSM	ENSMUSG00000075229.12	ENSMUST00000163352.9	391	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	405.618320866085	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCTGAGCCAGCAGGC	NA	False	NA	NA	False	NA	NA	NA	35892449	35912329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35892508_35905386_35905534_35910270_35910331_35912203
transcript_51967.known	chr16	+	506	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231523.2	506	3	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_1	36	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATCTTGAGAAGCCATT	NA	False	NA	NA	False	NA	NA	NA	35892453	35905712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35892508_35903060_35903187_35905386
transcript_51969.known	chr16	+	392	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231468.2	392	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	434	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_35892508_35910270_35910331_35912203
transcript_51974.known	chr16	+	2878	8	FSM	ENSMUSG00000022900.15	ENSMUST00000119464.2	2878	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	133.242452020398	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAATTCCTGTGTTTGGC	NA	False	NA	6	True	ATTAAA	-18	NA	36514399	36547103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543001_36545878
transcript_51976.known	chr16	+	3042	8	FSM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	99.4786409235671	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACAGAAAAAAAAAAAAAA	NA	False	NA	69	True	NA	NA	NA	36514339	36547166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
transcript_51990.nic	chr16	+	2510	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14076	491	-7484	-428	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCTGAGTTTCTACTTCT	NA	False	NA	18	True	AATAAA	-14	NA	36528415	36546675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
transcript_51991.nic	chr16	+	2946	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14074	57	-7486	0	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	12	True	ATTAAA	-24	NA	36528413	36547109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
transcript_52.known	ERCC-00154	+	521	1	FSM	ERCC-00154A	DQ854997	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00154_+_0_500
transcript_52002.nic	chr16	+	2256	15	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	69.4050518657669	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648717	36693075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
transcript_52003.known	chr16	+	2257	15	FSM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_14	52.2779073016196	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648769	36693075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
transcript_52004.known	chr16	+	2797	14	FSM	ENSMUSG00000022837.15	ENSMUST00000114819.8	2797	14	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	68.0198369951889	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATGTTATTTCAATGTT	NA	False	NA	52	True	AATAAA	-19	NA	36648768	36693083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812
transcript_52008.nic	chr16	+	1656	13	NIC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	67.3747294366862	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648717	36679934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
transcript_52010.nic	chr16	+	1709	13	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	130	junction_12	42.1751473685102	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648717	36679934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
transcript_52011.nic	chr16	+	2466	12	ISM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	-52	13142	-29	-1	5prime_fragment	FALSE	canonical	3	199	junction_1	25.9274257294988	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTCAAGTCTGAAAGCAT	NA	False	NA	14	True	NA	NA	NA	36648717	36679933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816
transcript_52015.known	chr16	-	849	6	FSM	ENSMUSG00000022838.15	ENSMUST00000023537.6	849	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.81575680566778	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTATTTGTTGGTATTCTC	8234	False	NA	NA	False	AATAAA	-18	NA	36648589	36614110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_36614289_36620948_36621065_36628376_36628523_36630833_36630971_36645019_36645115_36648412
transcript_52016.known	chr16	-	1030	6	FSM	ENSMUSG00000022838.15	ENSMUST00000114829.9	1030	6	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	1.32664991614216	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGGTATTCTCATGTG	8200	False	NA	NA	False	AATAAA	-23	NA	36648623	36614105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_36614289_36620948_36621207_36628376_36628523_36630833_36630971_36645019_36645115_36648412
transcript_52017.known	chr16	-	667	4	FSM	ENSMUSG00000022838.15	ENSMUST00000147053.2	667	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	4.49691252107735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGAGAATAAATATTCCTA	8250	False	NA	NA	False	AAAACA	-30	NA	36648573	36614186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_36614289_36620948_36621207_36628376_36628523_36648412
transcript_52022.nic	chr16	+	784	6	ISM	ENSMUSG00000034243.18	ENSMUST00000114812.9	11001	22	-67	43684	-39	0	5prime_fragment	FALSE	canonical	3	20	junction_2	8.99777750336159	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAATAGAAAAAATAAAACA	1410	False	NA	NA	False	NA	NA	NA	36695462	36709763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_36695626_36705372_36705551_36706492_36706591_36707600_36707766_36707918_36708069_36709733
transcript_52024.nic	chr16	+	646	5	ISM	ENSMUSG00000034243.18	ENSMUST00000114812.9	11001	22	-67	45487	-39	0	5prime_fragment	TRUE	canonical	3	20	junction_2	6.45658578507248	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATGCAAAGGCCAAGAT	1410	False	NA	NA	False	AATAAA	-2	NA	36695462	36707960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_36695626_36705372_36705551_36706492_36706591_36707600_36707766_36707918
transcript_52025.nic	chr16	+	754	5	ISM	ENSMUSG00000034243.18	ENSMUST00000114812.9	11001	22	-67	45379	-39	108	5prime_fragment	FALSE	canonical	3	20	junction_2	6.45658578507248	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGAGGACAGGCTGCCAA	1410	False	NA	NA	False	GGGGCT	-40	NA	36695462	36708068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_36695626_36705372_36705551_36706492_36706591_36707600_36707766_36707918
transcript_52028.known	chr16	+	509	4	FSM	ENSMUSG00000034243.18	ENSMUST00000135800.2	509	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	14.1656862405839	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATGCAAAGGCCAAGAT	1449	False	NA	NA	False	AATAAA	-2	NA	36695501	36707960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_36695626_36705372_36705551_36707600_36707766_36707918
transcript_52038.nnic	chr16	-	3203	5	NNC	ENSMUSG00000022828.11	novel	3084	5	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_4	117.992584512757	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGGTTATACTCACTAA	NA	False	NA	NA	False	AATAAA	-36	NA	37360094	37330151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37359838
transcript_52039.known	chr16	-	3084	5	FSM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_4	13.7204227340122	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGGTTATACTCACTAA	NA	False	NA	NA	False	AATAAA	-36	NA	37360151	37330151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
transcript_52041.known	chr16	-	3798	2	FSM	ENSMUSG00000022828.11	ENSMUST00000130350.2	3798	2	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37360138	37352881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_37356556_37360014
transcript_52044.known	chr16	+	2031	8	FSM	ENSMUSG00000022827.15	ENSMUST00000023524.13	2031	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.0896163971859	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGTCATTTCTTTTAA	NA	False	NA	NA	False	ATTAAA	-20	NA	37360246	37392747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37383977_37384129_37387681_37387754_37390749_37390789_37391391
transcript_52045.known	chr16	+	1960	8	FSM	ENSMUSG00000022827.15	ENSMUST00000130028.2	1960	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	38.0767216904748	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTGTCATTTCTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	37360261	37392744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37384030_37384129_37387681_37387754_37390749_37390789_37391391
transcript_52046.known	chr16	+	4332	4	FSM	ENSMUSG00000022827.15	ENSMUST00000128036.2	4332	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	5.55777733351102	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAAAAAAAAGCTCT	NA	False	NA	NA	False	NA	NA	NA	37360266	37384410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356
transcript_52047.known	chr16	-	971	3	FSM	ENSMUSG00000022820.5	ENSMUST00000023514.4	971	3	0	0	0	0	multi-exon	FALSE	canonical	3	6062	junction_1	348	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAGCTGGAACGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	37474815	37467531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_37468082_37469375_37469523_37474541
transcript_52051.known	chr16	+	3789	11	FSM	ENSMUSG00000022816.12	ENSMUST00000114763.3	3789	11	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_9	10.1607086367044	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATAATAGTTGGTTTC	5151	False	NA	NA	False	NA	NA	NA	37597234	37656876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_37597515_37597655_37597713_37636067_37636173_37639265_37639396_37641517_37641551_37642962_37643094_37647087_37647207_37649068_37649182_37649475_37649587_37651918_37651996_37654243
transcript_52054.known	chr16	+	8604	4	FSM	ENSMUSG00000034158.10	ENSMUST00000078717.7	8604	4	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	10.2089285540757	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTGGTCCGGTCAT	NA	False	NA	22	True	AATAAA	-22	NA	37688750	37709220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_37689343_37697410_37697540_37698648_37698927_37701615
transcript_52056.known	chr16	+	1090	1	FSM	ENSMUSG00000083405.2	ENSMUST00000119947.2	1090	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGCGGACTGTTTTACAC	NA	False	NA	NA	False	NA	NA	NA	37702903	37703993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_37702900_37704000
transcript_52058.known	chr16	+	1750	12	FSM	ENSMUSG00000022812.15	ENSMUST00000114750.2	1750	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	16.4818959031412	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCACTTTTCAGGAGATC	NA	False	NA	NA	False	TATAAA	-21	NA	37910649	38061141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_37910976_37964621_37964816_37991025_37991110_38004796_38004908_38008172_38008304_38011889_38011997_38014258_38014357_38028356_38028453_38037474_38037514_38040333_38040521_38049039_38049139_38060863
transcript_52065.nnic	chr16	+	2752	12	NNC	ENSMUSG00000022812.15	novel	1750	12	NA	NA	482	72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.1759894781969	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTGTATTATTGGTAG	NA	False	NA	NA	False	NA	NA	NA	37909844	38061538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_37910045_37910205_37910976_37964621_37964816_37991025_37991110_38004796_38004908_38008172_38008304_38011889_38011997_38014258_38014357_38028356_38028453_38040333_38040521_38049039_38049139_38060863
transcript_52066.known	chr16	+	8303	11	FSM	ENSMUSG00000022812.15	ENSMUST00000023507.13	8303	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	7.11407056473296	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGTCTTTTATTTAGTG	NA	False	NA	18	True	AATAAA	-22	NA	37909362	38066446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_37910976_37964621_37964816_37991025_37991110_38004796_38004908_38008172_38008304_38011889_38011997_38014258_38014357_38028356_38028453_38040333_38040521_38049039_38049139_38060863
transcript_5207.known	chr1	+	2783	8	FSM	ENSMUSG00000023150.15	ENSMUST00000111887.10	2783	8	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	396.626282743927	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACGTCTGTAGCCTTTTA	NA	False	NA	11	True	ATTAAA	-28	NA	151220259	151232550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917
transcript_52077.known	chr16	+	2186	7	FSM	ENSMUSG00000022812.15	ENSMUST00000132057.2	2186	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	8.09149072929224	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	1273	False	NA	NA	False	NA	NA	NA	37964656	38029852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_37964816_37991025_37991110_38004796_38004908_38008172_38008304_38011889_38011997_38014258_38014357_38028356
transcript_52083.known	chr16	-	2529	9	FSM	ENSMUSG00000022805.18	ENSMUST00000114740.3	2529	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.3166247903554	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTCAAAAATTAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	38162174	38142542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_38144022_38144498_38144657_38148569_38148748_38152529_38152712_38153115_38153173_38154103_38154188_38155865_38156024_38156705_38156783_38162018
transcript_52084.nnic	chr16	-	1542	8	NNC	ENSMUSG00000022805.18	novel	3048	17	NA	NA	23132	0	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_6	14.2571142284282	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACGTTGTTTGTAAAGCT	NA	False	NA	-3	True	AATAAA	-16	NA	38139042	38118115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140_38125363_38127077_38127225_38128443_38128516_38131353_38131471_38138841
transcript_52087.nic	chr16	+	501	4	NIC	ENSMUSG00000046516.11	novel	213	3	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_3	1753.17641883398	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAATATGCTGAACCGT	NA	False	NA	10	True	ATTAAA	-12	NA	38167332	38173107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_38167570_38169602_38169692_38170038_38170094_38172987
transcript_52088.known	chr16	+	444	3	FSM	ENSMUSG00000046516.11	ENSMUST00000050273.9	444	3	0	0	0	0	multi-exon	FALSE	canonical	3	2901	junction_2	455	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGTTGTGTTTCTTTT	NA	False	NA	28	True	ATTAAA	-30	NA	38167352	38173125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_38167570_38169602_38169692_38172987
transcript_52090.known	chr16	+	2169	4	FSM	ENSMUSG00000022803.13	ENSMUST00000023494.13	2169	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCCCTTCAACTTTTAA	4864	False	NA	NA	False	AATAAA	-17	NA	38182570	38198578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_38183510_38189845_38189955_38194180_38194740_38198016
transcript_52091.known	chr16	-	1974	11	FSM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	86.6256313108309	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	-3	True	AATAAA	-20	NA	38253507	38216478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679_38235858_38237421_38237624_38253165
transcript_52096.known	chr16	-	2966	4	FSM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	0	0	0	0	multi-exon	FALSE	canonical	3	1151	junction_2	86.2824818063706	1772	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCTGGAGACCTTT	NA	False	NA	NA	False	NA	NA	NA	38273065	38264391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_38266467_38267609_38267971_38270490_38270846_38272890
transcript_52101.nnic	chr16	-	1531	7	NNC	ENSMUSG00000002846.10	novel	1573	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	94.8801876052108	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTGGATCGCCT	NA	False	NA	-16	True	AGTAAA	-22	NA	38343025	38318708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338853_38342702
transcript_52102.known	chr16	-	1573	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTGGATCGCCT	NA	False	NA	-16	True	AGTAAA	-22	NA	38343025	38318708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
transcript_52106.nnic	chr16	-	809	3	NNC	ENSMUSG00000002846.10	novel	678	3	NA	NA	-14	2	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	92	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATTTTAGTATTTAATAT	NA	False	NA	-2	True	ATTAAA	-21	NA	38343039	38337019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_38337326_38338728_38338895_38342702
transcript_52108.known	chr16	-	678	3	FSM	ENSMUSG00000002846.10	ENSMUST00000147543.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	91	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTTTAGTATTTAAT	NA	False	NA	-4	True	ATTAAA	-19	NA	38343003	38337021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_38337233_38338728_38338895_38342702
transcript_52111.nnic	chr16	-	2490	16	Fusion	ENSMUSG00000002846.10_ENSMUSG00000034064.15	novel	1573	7	NA	NA	-115	12	multi-exon	FALSE	canonical	3	59	junction_6	371.529176362892	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGCCTAATCATGCCTCA	6115	False	NA	-4	True	AGTAAA	-34	NA	38370735	38318696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
transcript_5212.known	chr1	-	3688	20	FSM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_7	20.5845328266092	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGCTTTTCCGTTTACT	NA	False	NA	0	True	AATAAA	-18	NA	151304206	151243449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
transcript_5213.known	chr1	-	2855	19	FSM	ENSMUSG00000052748.15	ENSMUST00000111883.9	2855	19	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_5	41.9801540413245	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTTCATAGATACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	151304187	151244114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
transcript_52134.known	chr16	-	2758	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGGCTCCTCATTTACT	6230	False	NA	-1	True	NA	NA	NA	38370620	38345498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
transcript_52138.known	chr16	-	2922	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCATTGGCTCCTCATTT	6266	False	NA	-4	True	NA	NA	NA	38370584	38345501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
transcript_5216.nic	chr1	-	2326	18	NIC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_14	42.2765651215601	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTTCATAGATACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	151304253	151244114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151295850_151295935_151297784_151297872_151299257_151299357_151304047
transcript_52183.nnic	chr16	+	1944	10	NNC	ENSMUSG00000002845.15	novel	578	4	NA	NA	-2966	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	297.736274056234	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGAGGTTGCCCCTTCA	4104	False	NA	-15	True	NA	NA	NA	38376093	38411708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_38376219_38377506_38377590_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
transcript_52203.known	chr16	+	1645	9	FSM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	0	0	0	0	multi-exon	FALSE	canonical	1	310	junction_8	142.984210229661	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGATCTATTTTTTCTTGCG	7070	False	NA	0	True	GATAAA	-12	NA	38379059	38411552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
transcript_52205.nic	chr16	+	1657	9	NIC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	1	87	junction_5	232.101136360855	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGAGGTTGCCCCTTCA	7010	False	NA	-15	True	NA	NA	NA	38378999	38411708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
transcript_52207.known	chr16	+	2871	9	FSM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	0	0	0	0	multi-exon	FALSE	canonical	1	126	junction_1	222.417084269622	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCTATTTGTGAGCAT	NA	False	NA	4	True	AATAAA	-15	NA	38383173	38412524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
transcript_52208.known	chr16	+	2667	9	FSM	ENSMUSG00000002845.15	ENSMUST00000171687.8	2667	9	0	0	0	0	multi-exon	FALSE	canonical	1	87	junction_5	275.38779475496	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCTATTTGTGAGCAT	NA	False	NA	4	True	AATAAA	-15	NA	38383173	38412524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
transcript_52210.nnic	chr16	+	1975	9	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	251.54817505798	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGAGGTTGCCCCTTCA	NA	False	NA	-15	True	NA	NA	NA	38383170	38411708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_38383410_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
transcript_5222.nic	chr1	-	833	6	ISM	ENSMUSG00000052748.15	ENSMUST00000111883.9	2855	19	-66	42794	-47	0	5prime_fragment	FALSE	canonical	3	144	junction_1	12.983065893694	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAATAAAGACAGTTC	NA	False	NA	NA	False	AAGAAA	-4	NA	151304253	151286908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
transcript_52222.known	chr16	+	2009	7	FSM	ENSMUSG00000022793.18	ENSMUST00000154902.2	2009	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	9.26312882106017	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3944	False	NA	7	True	AGTAAA	-17	NA	38562657	38589210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583492_38586276_38586382_38588259
transcript_52223.known	chr16	+	2304	7	FSM	ENSMUSG00000022793.18	ENSMUST00000023482.13	2304	7	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	6.0184900284226	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTACTGCTTTTGCAG	3912	False	NA	NA	False	NA	NA	NA	38562625	38589411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
transcript_52226.known	chr16	+	2168	7	FSM	ENSMUSG00000022793.18	ENSMUST00000114712.8	2168	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	7.60847480700888	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3914	False	NA	7	True	AGTAAA	-17	NA	38562627	38589210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_38562798_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
transcript_5223.nic	chr1	-	651	6	ISM	ENSMUSG00000052748.15	ENSMUST00000111883.9	2855	19	58	42852	58	-58	5prime_fragment	FALSE	canonical	3	144	junction_1	12.983065893694	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAAGAATTGGCCTTCTT	NA	False	NA	NA	False	ATTAAA	-42	NA	151304129	151286966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
transcript_52230.known	chr16	+	3443	7	FSM	ENSMUSG00000022790.15	ENSMUST00000023478.8	3443	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.763762615825973	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTGTCATTAATTGTCA	9717	False	NA	NA	False	AATAAA	-18	NA	38722677	38847521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_38722922_38827495_38827660_38829146_38829355_38831578_38831735_38842727_38842851_38843591_38843743_38845124
transcript_52254.known	chr16	+	3745	16	FSM	ENSMUSG00000022701.19	ENSMUST00000178400.9	3745	16	0	0	0	0	multi-exon	FALSE	canonical	1	27	junction_10	16.0949957716331	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTCGATCCAGCATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	43710162	43784677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
transcript_52258.known	chr16	-	3856	9	FSM	ENSMUSG00000022704.17	ENSMUST00000156568.8	3856	9	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_3	36.5299534628776	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43710011	43681769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_43683665_43687772_43687891_43689308_43689461_43691141_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
transcript_52261.nic	chr16	-	3105	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	44.3163344603319	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43710077	43681769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701330_43701577_43709929
transcript_52262.nic	chr16	-	3080	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	35.9374456521328	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43710077	43681769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
transcript_52270.known	chr16	+	3779	17	FSM	ENSMUSG00000022701.19	ENSMUST00000132859.8	3779	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	29.3489245969933	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTCGATCCAGCATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	43710162	43784677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_43710402_43712515_43712555_43718452_43718595_43725713_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
transcript_52282.known	chr16	-	5751	5	FSM	ENSMUSG00000036304.15	ENSMUST00000231700.2	5751	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	18.5067555233217	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTGTGGTTGTTGGTGT	NA	False	NA	-1	True	AATAAA	-20	NA	43800154	43785395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270_43799441_43799821
transcript_52285.nnic	chr16	-	3022	5	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	-15	1202	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	11.6054943884352	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCTTGGCCTTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	43800169	43788238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_43789777_43791761_43791930_43793830_43794530_43799270_43799540_43799821
transcript_52287.nnic	chr16	-	2169	3	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	-75	-5108	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTCTGCTGCTGTTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	43800229	43794616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_43796109_43799270_43799540_43799821
transcript_52289.nnic	chr16	-	559	2	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	-75	-9880	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAAGAACCTGAATTGGAG	NA	False	NA	NA	False	AAAAAG	-5	NA	43800229	43799388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_43799540_43799821
transcript_52291.known	chr16	-	3896	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGCAGTTCTCTATTTA	NA	False	NA	-11	True	AATATA	-17	NA	43959559	43906007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
transcript_52309.known	chr16	+	3756	6	FSM	ENSMUSG00000022698.18	ENSMUST00000159514.8	3756	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	773.749675282646	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATCTGTCTGTAACTGT	NA	False	NA	19	True	AATAAA	-19	NA	43960192	43982837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_43960475_43965143_43965282_43976772_43976910_43977436_43977557_43978242_43978310_43979825
transcript_52313.known	chr16	+	3557	5	FSM	ENSMUSG00000022698.18	ENSMUST00000063520.15	3557	5	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	525.255652040033	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGATCTGTCTGTAACT	NA	False	NA	17	True	AATAAA	-17	NA	43960248	43982835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_43960475_43976775_43976910_43977436_43977557_43978242_43978310_43979825
transcript_52322.known	chr16	+	2136	4	FSM	ENSMUSG00000022698.18	ENSMUST00000063542.8	2136	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	621.795965106097	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGGTATGAAAGTATCAT	NA	False	NA	NA	False	AGTAAA	-2	NA	43960254	43981537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_43960475_43976772_43976910_43978242_43978310_43979825
transcript_52331.known	chr16	+	4627	18	FSM	ENSMUSG00000043065.13	ENSMUST00000050897.7	4627	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	35.5942143737688	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGCCCCCGTAGATTCA	6108	False	NA	NA	False	AATAAA	-23	NA	44167483	44208860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
transcript_52336.nic	chr16	+	3325	17	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	-33	94	intron_retention	FALSE	canonical	0	0	junction_1	36.6614046887186	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGATACTTTTTTTTTCTA	6368	False	NA	18	True	AATAAA	-23	NA	44167743	44207600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
transcript_5234.known	chr1	+	2749	15	FSM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_10	24.5323609686038	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304292	151333912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
transcript_52344.nic	chr16	+	2952	16	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	-22	94	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	37.8355505958204	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGATACTTTTTTTTTCTA	6379	False	NA	18	True	AATAAA	-23	NA	44167754	44207600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_44167870_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
transcript_52356.known	chr16	-	4451	19	FSM	ENSMUSG00000022687.13	ENSMUST00000114634.3	4451	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	3.24132269906996	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGTCACGAGTGAGTCA	NA	False	NA	-5	True	AATAAA	-26	NA	44379260	44305411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_44306163_44307074_44307266_44307712_44307793_44307979_44308216_44308872_44309095_44310502_44310626_44310939_44311046_44311534_44311717_44312055_44312263_44312670_44312782_44313175_44313336_44316614_44316923_44319763_44320037_44320712_44321007_44322008_44322153_44323891_44324039_44340587_44340867_44341521_44341699_44378800
transcript_52360.known	chr16	+	2866	9	FSM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	9.69455388349562	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAATGCCATCACCTGA	NA	False	NA	NA	False	NA	NA	NA	44544663	44557647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_44544832_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
transcript_52367.known	chr16	-	3415	6	FSM	ENSMUSG00000022668.11	ENSMUST00000162512.8	3415	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	12.4739729036101	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	44566726	44557130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566361
transcript_52370.known	chr16	-	836	6	FSM	ENSMUSG00000022668.11	ENSMUST00000023348.11	836	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	38.0473389345431	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566722	44559504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566562
transcript_52375.known	chr16	-	4233	7	FSM	ENSMUSG00000022664.12	ENSMUST00000023344.10	4233	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.7404875511093	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATTAGCCTTGAGTCCAC	NA	False	NA	NA	False	NA	NA	NA	44979069	44959935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_44962576_44963983_44964765_44967630_44967699_44971815_44971950_44972939_44973039_44977823_44978010_44978744
transcript_52378.known	chr16	+	2057	12	FSM	ENSMUSG00000022663.4	ENSMUST00000023343.4	2057	12	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_3	33.1011472673263	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACACATATGCCACATATA	NA	False	NA	NA	False	ATTAAA	-17	NA	44979147	45008901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_44979535_44982768_44982811_44987342_44987393_44990228_44990300_44992008_44992117_44995611_44995662_44998592_44998675_45003018_45003054_45003183_45003340_45004044_45004173_45006528_45006598_45008022
transcript_5238.nic	chr1	+	2499	15	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	47.2939138337512	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304370	151333912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
transcript_52380.nnic	chr16	+	1420	11	NIC	ENSMUSG00000022663.4	novel	2057	12	NA	NA	-57	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_2	116.159201099181	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTTATTTGTTTAATAAAA	NA	False	NA	-13	True	AATAAA	-17	NA	44979090	45008257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_44979535_44982768_44982811_44990228_44990300_44992008_44992117_44995611_44995662_44998592_44998675_45003018_45003054_45003183_45003340_45004044_45004173_45006528_45006598_45008022
transcript_52381.known	chr16	-	2347	6	FSM	ENSMUSG00000022661.15	ENSMUST00000163230.8	2347	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7.98498591107085	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGAATTTTTTTTTTTC	NA	False	NA	NA	False	AATAAA	-7	NA	45229416	45202497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45220584_45220667_45229218
transcript_52383.nic	chr16	-	2234	5	NIC	ENSMUSG00000022661.15	novel	2347	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	11.6270159542335	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGAATTTTTTTTTTTC	NA	False	NA	NA	False	AATAAA	-7	NA	45229385	45202497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45229218
transcript_52385.known	chr16	-	1240	4	FSM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	1.63299316185545	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	NA	False	NA	-9	True	AATAAA	-15	NA	45544971	45531592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_45532073_45533294_45533398_45543285_45543461_45544489
transcript_52389.nnic	chr16	-	1161	6	NNC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-28	-2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	119.092233164048	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTATGGTGAGTCCTGT	NA	False	NA	-7	True	NA	NA	NA	45563346	45550089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_45550357_45552069_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
transcript_52391.nic	chr16	-	1247	6	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-11	172	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	144.088028649156	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGATGTTTGCCTTT	NA	False	NA	-34	True	ATTAAA	-18	NA	45563329	45551741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45560681_45560866_45563139
transcript_52392.known	chr16	-	2848	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563318	45550087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
transcript_52393.known	chr16	-	827	5	FSM	ENSMUSG00000033157.18	ENSMUST00000128348.3	827	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	130.370625525845	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACCCGGATACTTCAGG	NA	False	NA	NA	False	AGTAAA	-3	NA	45563265	45551913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45563139
transcript_52398.nic	chr16	-	2627	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563281	45550087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_52399.nic	chr16	-	1203	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-11	402	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGCCATGCTATATTTAA	NA	False	NA	NA	False	AATAAA	-14	NA	45563281	45551511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_5240.nnic	chr1	+	2580	14	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_12	51.733614448493	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304398	151333912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151333213_151333341_151333432
transcript_52401.nic	chr16	-	1118	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-23	257	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTTGTCTGGTACCAT	NA	False	NA	-8	True	AATAAA	-13	NA	45563341	45551656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_52402.nic	chr16	-	1038	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-23	177	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTTTGCCTTTCTTAC	NA	False	NA	-29	True	ATTAAA	-23	NA	45563341	45551736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_52407.known	chr16	-	5483	18	FSM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_15	7.72315083521806	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGTGGAAACACTTTC	NA	False	NA	-10	True	ATTAAA	-13	NA	45664741	45566605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121_45646459_45664570
transcript_52413.nic	chr16	-	3464	15	ISM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	-19	10899	-19	0	5prime_fragment	FALSE	canonical	3	48	junction_12	8.49759870042528	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAGAAAAAGAAGTCAAAA	NA	False	NA	NA	False	AAGAAA	-20	NA	45664760	45577504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121_45646459_45664570
transcript_52422.known	chr16	-	2093	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3919	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAATAAAAAAAAATAAA	NA	False	NA	NA	False	GATAAA	-31	NA	45975440	45973347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_45973300_45975400
transcript_52423.known	chr16	-	1746	7	FSM	ENSMUSG00000022656.16	ENSMUST00000096052.9	1746	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	112.29784305834	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCTTCCACTAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	46317215	46256341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_46256802_46258292_46258432_46274986_46275139_46278476_46278595_46279177_46279475_46284180_46284523_46316977
transcript_52424.known	chr16	-	3062	6	FSM	ENSMUSG00000022656.16	ENSMUST00000023334.15	3062	6	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_1	19.3328735577513	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGAGATTTTTGGGGGTT	NA	False	NA	-7	True	ATTAAA	-13	NA	46317330	46267531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_46269332_46274986_46275139_46278476_46278595_46279177_46279475_46284180_46284523_46316977
transcript_52430.nnic	chr16	+	1526	8	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_3	208.929145298357	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104135	48114600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_48104205_48108240_48108359_48108984_48109070_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
transcript_52438.known	chr16	+	1479	7	FSM	ENSMUSG00000058550.16	ENSMUST00000096045.9	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_4	76.5188792971309	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104097	48114600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
transcript_52440.nnic	chr16	+	2204	7	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_4	181.921839138559	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104106	48114600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48110476_48111376_48111678_48113273_48113470_48114061
transcript_52441.known	chr16	+	1271	6	FSM	ENSMUSG00000058550.16	ENSMUST00000050705.4	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	211.400094607358	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_48104205_48108240_48108359_48109401_48109464_48111376_48111678_48113273_48113470_48114061
transcript_52452.known	chr16	+	2447	8	FSM	ENSMUSG00000072419.6	ENSMUST00000232448.2	2447	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	195.358069989965	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGCAGCTCACTCGCCTG	NA	False	NA	NA	False	AATACA	-17	NA	48124270	48140086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_48124570_48130639_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
transcript_52466.nnic	chr16	+	3490	28	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	-13	623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	346.731012546799	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTTTGATGTATAATG	NA	False	NA	12	True	ATTAAA	-16	NA	48251586	48451886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
transcript_52472.known	chr16	+	3045	27	FSM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	334.347850609362	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	NA	False	NA	11	True	AATAAA	-16	NA	48251599	48451263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
transcript_52474.nnic	chr16	+	3442	27	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	-67	623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	351.484057816864	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTTTGATGTATAATG	NA	False	NA	12	True	ATTAAA	-16	NA	48251532	48451886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
transcript_5248.known	chr1	+	2371	9	FSM	ENSMUSG00000053286.12	ENSMUST00000188843.7	2371	9	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_8	23.5677215699779	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAGAAAAGAAAAGC	NA	False	NA	NA	False	NA	NA	NA	151304392	151326692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650
transcript_52480.nnic	chr16	+	2956	26	NIC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_19	338.451806909049	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	NA	False	NA	11	True	AATAAA	-16	NA	48251586	48451263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
transcript_52485.nic	chr16	+	2645	25	ISM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	-13	6579	-13	-4463	5prime_fragment	FALSE	canonical	0	0	junction_19	300.311987657096	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAAAACGTGTTTCAACC	NA	False	NA	NA	False	TATAAA	-7	NA	48251586	48444684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652
transcript_52531.nnic	chr16	+	1493	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16954	623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	424.555061211146	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTTTGATGTATAATG	649	False	NA	12	True	ATTAAA	-16	NA	48431983	48451886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
transcript_52534.nnic	chr16	+	953	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16952	0	at_least_one_novel_splicesite	FALSE	canonical	3	194	junction_1	345.998525418587	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	647	False	NA	11	True	AATAAA	-16	NA	48431981	48451263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_48432112_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
transcript_52535.nnic	chr16	+	1061	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16954	0	at_least_one_novel_splicesite	FALSE	canonical	3	485	junction_1	244.404064898224	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	649	False	NA	11	True	AATAAA	-16	NA	48431983	48451263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
transcript_52546.known	chr16	-	5820	32	FSM	ENSMUSG00000064061.14	ENSMUST00000121869.8	5820	32	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_19	19.7691147506127	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATTTCTTTATGTATT	4197	False	NA	-7	True	AATAAA	-18	NA	48814528	48744594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
transcript_5255.known	chr1	+	1567	7	FSM	ENSMUSG00000053286.12	ENSMUST00000188179.7	1567	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	23.1732604525129	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151304292	151319459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997
transcript_52560.nic	chr16	-	1569	15	ISM	ENSMUSG00000064061.14	ENSMUST00000114516.8	3331	31	-1	22528	-1	-2865	5prime_fragment	FALSE	canonical	3	44	junction_2	22.4353947764578	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATAAAGTTTATTAAATTT	4420	False	NA	NA	False	NA	NA	NA	48814305	48768769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
transcript_52564.known	chr16	+	3974	21	FSM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	0	0	0	0	multi-exon	FALSE	canonical	2	173	junction_10	25.4173169315725	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATTTTAGATCAGTAC	NA	False	NA	NA	False	AATAAA	-23	NA	48814550	48840068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
transcript_52568.nic	chr16	+	2580	20	ISM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	-42	2319	-39	-2265	5prime_fragment	FALSE	canonical	2	173	junction_10	24.630004448103	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAATGTTTTACAAAAGGA	NA	False	NA	NA	False	CATAAA	-25	NA	48814508	48837749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714
transcript_5257.known	chr1	-	3160	7	FSM	ENSMUSG00000026484.14	ENSMUST00000076110.11	3160	7	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_6	52.4404424085076	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTATTAGATGTGTACT	NA	False	NA	-6	True	CATAAA	-19	NA	151376706	151345156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
transcript_52575.nic	chr16	+	2456	18	ISM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	-42	3654	-39	1702	5prime_fragment	FALSE	canonical	2	173	junction_10	25.983891736185	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAGTAAAACCTTTAGT	NA	False	NA	NA	False	AATGAA	-31	NA	48814508	48836414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306
transcript_52576.nic	chr16	+	2176	17	ISM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	-42	4788	-39	568	5prime_fragment	FALSE	canonical	2	173	junction_10	26.7732813407322	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAGTTGAGAGAAAAAAT	NA	False	NA	9	True	NA	NA	NA	48814508	48835280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255
transcript_52582.known	chr16	+	2601	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTACCTTTCTTCCCTAAA	NA	False	NA	NA	False	ATTAAA	-17	NA	49519595	49585489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
transcript_52586.known	chr16	+	1032	12	FSM	ENSMUSG00000055447.20	ENSMUST00000230641.2	1032	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	27.2824225191312	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAAGTGACGGACTGTA	NA	False	NA	NA	False	NA	NA	NA	49676149	49731239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
transcript_52587.known	chr16	+	1358	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229101.2	1358	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	27.0739727413618	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49675995	49731444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
transcript_52588.known	chr16	+	1316	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229206.2	1316	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_9	24.8766959220874	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676007	49731444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
transcript_52589.known	chr16	+	1271	10	FSM	ENSMUSG00000055447.20	ENSMUST00000230281.2	1271	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	27.4352211222124	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676018	49731444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728446_49731236
transcript_52594.known	chr16	-	8743	17	FSM	ENSMUSG00000022641.16	ENSMUST00000138166.8	8743	17	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_15	4.24079886342184	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTCAAATACATTTCTTT	9714	False	NA	-1	True	AATAAA	-35	NA	50252753	50012206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252604
transcript_52597.known	chr16	-	4516	13	FSM	ENSMUSG00000022641.16	ENSMUST00000114477.8	4516	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	4.38669072941729	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAGCAAAACTTAAA	9715	False	NA	NA	False	NA	NA	NA	50252752	50038919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252473
transcript_52605.nic	chr16	-	1823	11	ISM	ENSMUSG00000022641.16	ENSMUST00000114477.8	4516	13	-39	6290	-38	0	5prime_fragment	FALSE	canonical	1	2	junction_10	4.40567815438214	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAGAAAAACAAACT	9676	False	NA	NA	False	NA	NA	NA	50252791	50045209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252473
transcript_52606.nic	chr16	-	1692	11	ISM	ENSMUSG00000022641.16	ENSMUST00000089399.11	2539	14	-54	14369	-38	0	5prime_fragment	FALSE	canonical	1	5	junction_9	3.56230262611138	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAGAAAAACAAACT	9676	False	NA	NA	False	NA	NA	NA	50252791	50045209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252604
transcript_52619.known	chr16	+	3864	19	FSM	ENSMUSG00000022637.12	ENSMUST00000226593.2	3864	19	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_16	12.3923761908006	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGACTGCTTGTACTCCA	NA	False	NA	NA	False	AAAACA	-8	NA	51851968	52025876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_51852049_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52006711_52006844_52009375_52009517_52014521_52014642_52024795
transcript_52620.known	chr16	+	6648	18	FSM	ENSMUSG00000022637.12	ENSMUST00000114471.3	6648	18	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_15	12.7088776425873	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGTATGTTATTTTT	NA	False	NA	NA	False	TATAAA	-17	NA	51851587	52028411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_51852049_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52009375_52009517_52014521_52014642_52024795
transcript_52621.known	chr16	-	3627	12	FSM	ENSMUSG00000035356.18	ENSMUST00000114458.8	3627	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.64418901313618	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTCTTTTCTAGTGCC	NA	False	NA	-10	True	AATAAA	-17	NA	55642501	55631737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_55633147_55634312_55634481_55634603_55634715_55636002_55636173_55636430_55636495_55636679_55636827_55637193_55637300_55638091_55638898_55639110_55639215_55639354_55639386_55639929_55640070_55642130
transcript_52624.nnic	chr16	-	2973	6	NNC	ENSMUSG00000075033.5	novel	6436	6	NA	NA	-144	-3247	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	2.13541565040626	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGACAAGTATTTCTTGA	NA	False	NA	NA	False	AATAAA	-16	NA	55715792	55663562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_55665090_55669974_55670182_55680668_55680743_55686158_55686914_55710944_55711213_55715650
transcript_52625.known	chr16	-	7911	11	FSM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_5	7.29383301152419	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGTGATATCTGGTTATT	NA	False	NA	-1	True	AATAAA	-15	NA	55755218	55720250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_55726233_55731917_55731994_55735219_55735995_55738900_55739026_55739765_55739931_55742433_55742601_55743289_55743404_55745331_55745434_55748083_55748243_55750828_55750972_55755115
transcript_52626.known	chr16	-	989	5	FSM	ENSMUSG00000022604.19	ENSMUST00000121129.8	989	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.9495821678389	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAAGGAGATTGGATAT	NA	False	NA	NA	False	AATAAA	-13	NA	55755217	55744730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_55745214_55745331_55745434_55748083_55748243_55750828_55750972_55755115
transcript_52627.known	chr16	+	4920	11	FSM	ENSMUSG00000022601.12	ENSMUST00000050248.9	4920	11	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	21.3485362495886	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGCGTTGAGCTTGAC	NA	False	NA	6	True	AATAAA	-27	NA	55794245	55829276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_55794735_55800957_55801194_55802537_55802770_55810621_55811458_55811804_55811982_55818368_55818615_55820941_55821087_55823071_55823190_55826272_55826432_55826537_55826714_55827170
transcript_52628.known	chr16	+	677	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	0	0	0	0	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786637	55791798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
transcript_5263.known	chr1	+	1989	1	FSM	ENSMUSG00000053286.12	ENSMUST00000186244.2	1989	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	151304398	151306387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151304400_151306400
transcript_52634.nnic	chr16	-	2418	6	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	1006.61305375998	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850101	55835868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55844824_55845001_55849965
transcript_5264.known	chr1	+	2441	15	FSM	ENSMUSG00000053286.12	ENSMUST00000189655.2	2441	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	65.1973456327098	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304456	151333912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151323976_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
transcript_52641.known	chr16	-	2200	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850059	55835868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
transcript_52642.known	chr16	-	2295	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850102	55835868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
transcript_52643.known	chr16	-	938	5	FSM	ENSMUSG00000071533.12	ENSMUST00000130818.8	938	5	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_4	876.141113063415	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGTTTTATATACAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	55850039	55837361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
transcript_52654.known	chr16	-	792	4	FSM	ENSMUSG00000071533.12	ENSMUST00000122253.2	792	4	0	0	0	0	multi-exon	FALSE	canonical	3	1778	junction_3	312.848206004126	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGATTTTTGTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	55850059	55838482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_55838891_55842417_55842493_55844586_55844802_55849965
transcript_52656.known	chr16	-	1350	1	FSM	ENSMUSG00000102101.2	ENSMUST00000186480.2	1350	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTTTCCTTGTAATGCC	3975	False	NA	NA	False	ATTAAA	-24	NA	55794980	55793630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_55793600_55795000
transcript_52657.known	chr16	+	639	5	FSM	ENSMUSG00000098274.8	ENSMUST00000137811.8	639	5	0	0	0	0	multi-exon	FALSE	canonical	3	12575	junction_2	609.402371180159	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
transcript_52658.known	chr16	-	3002	2	FSM	ENSMUSG00000044763.9	ENSMUST00000059052.9	3002	2	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	0	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATATTTTTACTATTTT	7386	False	NA	NA	False	NA	NA	NA	55858182	55852971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_55855655_55857863
transcript_52659.known	chr16	+	4825	24	FSM	ENSMUSG00000052917.16	ENSMUST00000089362.9	4825	24	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_22	11.8366321271476	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGACTGCTAGCAATGTA	NA	False	NA	NA	False	ATTAAA	-43	NA	55895830	56010375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55959347_55959464_55971636_55971822_55973737_55974072_55975586_55975739_55978830_55978978_55982737_55982772_55986195_55986376_55990057_55990321_55992112_55992247_55993519_55993637_55996159_55996283_55999319_55999413_55999860_55999986_56000888_56000942_56004509_56004554_56005123_56005193_56006421_56006573_56008597
transcript_52661.known	chr16	+	1130	7	FSM	ENSMUSG00000052917.16	ENSMUST00000049128.11	1130	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	9.3407708461347	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTAATGACATTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	55895826	55946902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55946503
transcript_52665.known	chr16	+	914	6	FSM	ENSMUSG00000052917.16	ENSMUST00000201011.2	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	10.507140429251	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGCCTTGCTAGCC	NA	False	NA	NA	False	ACTAAA	-17	NA	55895842	55946783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55946503
transcript_52669.known	chr16	-	1945	8	FSM	ENSMUSG00000022757.20	ENSMUST00000065515.14	1945	8	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.3950027716757	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTTGTTGCCTAAT	NA	False	NA	0	True	AATAAA	-16	NA	56537813	56510694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_56511517_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973_56526058_56532973_56533204_56537547
transcript_52672.known	chr16	-	2701	6	FSM	ENSMUSG00000022754.7	ENSMUST00000023435.6	2701	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	1.32664991614216	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTGTGGTTGTGCTATT	6302	False	NA	NA	False	AATAAA	-13	NA	56706529	56625523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_56627140_56631888_56632035_56642587_56642773_56643750_56643958_56646028_56646222_56706175
transcript_52678.known	chr16	+	5964	12	FSM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_5	122.457278770872	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTGATGGGATATTAG	NA	False	NA	13	True	AATAAA	-15	NA	56942065	56977068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_56942558_56953439_56953614_56955015_56955143_56957060_56957171_56958392_56958542_56960941_56961150_56963083_56963219_56965053_56965162_56966392_56966510_56968095_56968194_56970182_56970306_56972945
transcript_5268.nic	chr1	+	2478	15	NIC	ENSMUSG00000026483.14	novel	4010	15	NA	NA	-96	-1562	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_1	53.6363416244727	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGATCCACCCAGAAGCC	NA	False	NA	NA	False	TATAAA	-12	NA	151446840	151593531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_151447017_151447193_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
transcript_52683.known	chr16	-	1286	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	0	0	0	0	multi-exon	TRUE	canonical	3	674	junction_8	39.9499687108764	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGATGTTTTTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	56987695	56977027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
transcript_52688.nic	chr16	+	1397	6	ISM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	-303	16085	-303	-1047	5prime_fragment	FALSE	canonical	3	1304	junction_5	77.5432782386713	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATGACAAAATCATAAGTG	NA	False	NA	NA	False	AATATA	-14	NA	56941762	56960983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_56942558_56953439_56953614_56955015_56955143_56957060_56957171_56958392_56958542_56960941
transcript_5269.nic	chr1	+	4239	15	NIC	ENSMUSG00000026483.14	novel	4010	15	NA	NA	-295	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_1	53.6363416244727	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTACCAATGTAGA	NA	False	NA	12	True	NA	NA	NA	151446641	151595093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_151447017_151447193_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
transcript_52692.nic	chr16	+	768	2	ISM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	-240	23593	-240	-8555	5prime_fragment	FALSE	canonical	3	1487	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCAACAAATATTTCAAAGC	NA	False	NA	NA	False	AAAACA	-3	NA	56941825	56953475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_56942558_56953439
transcript_52695.nic	chr16	-	3494	18	NIC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	-20	0	combination_of_known_junctions	TRUE	canonical	3	26	junction_15	37.195732165794	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	57051756	56989224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032854_57034526_57034633_57038671_57038784_57051676
transcript_52696.known	chr16	-	3690	18	FSM	ENSMUSG00000022749.9	ENSMUST00000023431.8	3690	18	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_12	18.4520326427881	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	57051867	56989224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
transcript_52697.nic	chr16	-	2077	17	ISM	ENSMUSG00000022749.9	ENSMUST00000023431.8	3690	18	-37	2832	-37	95	5prime_fragment	FALSE	canonical	3	134	junction_11	18.4720016173126	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCCGAGCTAATTACCTT	NA	False	NA	NA	False	ACTAAA	-32	NA	57051904	56992056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
transcript_52700.nnic	chr16	-	2031	4	NNC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	3673	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	80.5536398239638	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	56994946	56989224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_56990804_56991985_56992181_56993386_56993523_56994825
transcript_52702.known	chr16	-	610	2	FSM	ENSMUSG00000022748.9	ENSMUST00000231282.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATGAGTTTCAGAAGT	NA	False	NA	NA	False	NA	NA	NA	57427139	57264855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_57265355_57427028
transcript_52703.known	chr16	-	529	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTATGTTTTGTGAT	NA	False	NA	-1	True	AATAAA	-17	NA	57427227	57381795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_57382126_57427028
transcript_52705.known	chr16	-	1150	10	FSM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	0	0	0	0	multi-exon	TRUE	canonical	3	200	junction_5	24.152805731247	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACAGTTTCTCTTTCCCCT	NA	False	NA	-9	True	AATAAA	-32	NA	57427209	57122362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826_57143907_57427028
transcript_52706.known	chr16	+	3253	2	FSM	ENSMUSG00000043336.15	ENSMUST00000159414.2	3253	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGAATTTTCATTTGAT	NA	False	NA	NA	False	AGTAAA	-24	NA	57369604	57393167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_57369703_57390012
transcript_52707.known	chr16	-	4123	11	FSM	ENSMUSG00000022747.18	ENSMUST00000137035.8	4123	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	1.74355957741627	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAATAACCAAGGGG	NA	False	NA	NA	False	ATTAAA	-3	NA	58343789	58288487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_58291091_58292673_58292827_58293771_58293910_58294016_58294204_58296212_58296309_58305125_58305190_58306757_58306862_58309266_58309345_58314042_58314225_58327810_58327978_58343438
transcript_52710.known	chr16	+	3097	7	FSM	ENSMUSG00000022742.7	ENSMUST00000060077.7	3097	7	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	26.4916129285394	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGTATTTGTTTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	58490654	58500749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_58491314_58492890_58493035_58493698_58493810_58494742_58494885_58495604_58495824_58498307_58498413_58499032
transcript_52714.known	chr16	+	2994	5	FSM	ENSMUSG00000022742.7	ENSMUST00000232176.2	2994	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	21.7873242964803	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	58490690	58497578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_58491314_58492890_58493035_58493698_58493810_58494742_58494885_58495604
transcript_52717.known	chr16	+	1540	6	FSM	ENSMUSG00000022744.13	ENSMUST00000162057.8	1540	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	183.824916700648	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAGTGAAAA	NA	False	NA	NA	False	NA	NA	NA	58548287	58553971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_58548448_58549535_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
transcript_52720.known	chr16	+	2147	5	FSM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	33.101170674162	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548272	58554614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201
transcript_52723.known	chr16	+	2159	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGCCGGTATATACATG	NA	False	NA	-44	True	NA	NA	NA	59292137	59312824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
transcript_52737.known	chr16	+	2200	2	FSM	ENSMUSG00000022724.16	ENSMUST00000120667.2	2200	2	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGTTTAGAGTAGGTAG	NA	False	NA	NA	False	ATTAAA	-15	NA	59292166	59297930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_59292309_59295872
transcript_52738.known	chr16	-	1554	9	FSM	ENSMUSG00000022722.19	ENSMUST00000099646.10	1554	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	44.8525361601772	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAACTAGAGTGTTCTG	NA	False	NA	NA	False	AATAAA	-10	NA	59459754	59433690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_59434208_59439028_59439042_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
transcript_52739.known	chr16	-	1696	8	FSM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	9.94064014692275	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTATTTTTATCCTTAACA	NA	False	NA	NA	False	AATAAA	-21	NA	59459530	59433311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
transcript_5274.known	chr1	+	6531	14	FSM	ENSMUSG00000026483.14	ENSMUST00000148810.8	6531	14	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_12	16.2156327524439	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGTTGCTCATTTATC	NA	False	NA	11	True	AATAAA	-19	NA	151447123	151597690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
transcript_52740.known	chr16	-	3565	6	FSM	ENSMUSG00000050312.13	ENSMUST00000143314.8	3565	6	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_4	5.49181208709839	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	ATTAAA	-18	NA	62607140	62552806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596747_62606150_62606261_62607033
transcript_52741.known	chr16	-	3813	6	FSM	ENSMUSG00000050312.13	ENSMUST00000063089.12	3813	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	5.74804314527997	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	ATTAAA	-18	NA	62607140	62552806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596995_62606150_62606261_62607033
transcript_52743.known	chr16	-	3528	10	FSM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	10.3494497975067	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATTTATCTAATTTTAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	62667403	62614047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_62616072_62622084_62622154_62623082_62623200_62624199_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
transcript_52747.nic	chr16	-	1136	7	ISM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	-15	10349	-15	7816	5prime_fragment	FALSE	canonical	3	43	junction_1	7.97217382873427	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCAGACCGTGGAGAAGG	NA	False	NA	NA	False	AAAAAG	-8	NA	62667418	62624396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
transcript_52748.nic	chr16	-	1107	6	ISM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	-15	12857	-15	5308	5prime_fragment	FALSE	canonical	3	47	junction_5	7.11617874986288	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGAGTTGTGGCAAGTGG	NA	False	NA	NA	False	NA	NA	NA	62667418	62626904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
transcript_52754.known	chr16	+	3303	15	FSM	ENSMUSG00000022912.9	ENSMUST00000023629.9	3303	15	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	24.011476847711	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCAATTTCTTTATTT	NA	False	NA	NA	False	AATAAA	-22	NA	62674669	62749709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_62674868_62705763_62705922_62709343_62709369_62719238_62719326_62720688_62720812_62720915_62721048_62723854_62723981_62728024_62728147_62730360_62730477_62734160_62734351_62738437_62738606_62739875_62740045_62744878_62745028_62746690_62746917_62748395
transcript_52758.known	chr16	-	5522	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	18.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCTTATATTTTAAAGAA	NA	False	NA	NA	False	AATAAA	-39	NA	64591524	64582498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_64587357_64589286_64589526_64591099
transcript_52761.known	chr16	-	6261	9	FSM	ENSMUSG00000047141.6	ENSMUST00000207826.2	6261	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_4	10.7812047100498	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGTGTTCAGTTTTATG	NA	False	NA	-3	True	AATAAA	-20	NA	64672015	64600709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_64603640_64604869_64607166_64608667_64608810_64611449_64611590_64612131_64612335_64614783_64614920_64634987_64635070_64650826_64650973_64671829
transcript_52767.known	chr16	+	4425	3	FSM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	0	0	0	0	multi-exon	FALSE	canonical	3	981	junction_2	152	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATTTTGTTTTGTGAGC	NA	False	NA	21	True	AATAAA	-30	NA	64672358	64679870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_64672600_64673161_64673389_64675913
transcript_52772.nic	chr16	+	508	2	ISM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	-60	6502	-60	-2981	5prime_fragment	FALSE	canonical	3	1285	junction_1	0	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGACTGGAAATTAAGCTG	NA	False	NA	NA	False	AAAACA	-17	NA	64672298	64673368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_64672600_64673161
transcript_52773.known	chr16	-	1872	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCCTAACGCGCATCA	NA	False	NA	-8	True	AATAAA	-19	NA	65359612	65336013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
transcript_52775.nic	chr16	+	3029	16	NIC	ENSMUSG00000022707.17	novel	2984	16	NA	NA	-45	0	intron_retention	TRUE	canonical	1	5	junction_14	8.94278107376745	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTAATGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	70110791	70366604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_70111184_70157745_70157916_70198621_70198738_70230432_70230559_70231401_70231538_70233815_70233907_70237997_70238208_70275193_70275310_70280708_70280837_70284915_70285015_70288821_70288933_70292115_70292288_70324004_70324190_70325767_70325899_70357911_70358030_70365876
transcript_52776.known	chr16	+	2984	16	FSM	ENSMUSG00000022707.17	ENSMUST00000163832.8	2984	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.0445562256807	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTAATGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	70110836	70366604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_70111184_70157745_70157916_70198621_70198742_70230436_70230559_70231401_70231538_70233815_70233907_70237997_70238208_70275193_70275310_70280708_70280837_70284915_70285015_70288821_70288933_70292115_70292288_70324004_70324190_70325767_70325899_70357911_70358030_70365876
transcript_52777.nnic	chr16	+	2726	6	NNC	ENSMUSG00000022883.12	novel	6601	29	NA	NA	17393	-226	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.2727787306346	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGTATTCACCTAAAACT	NA	False	NA	NA	False	NA	NA	NA	72820701	72842757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_72820840_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
transcript_52778.known	chr16	+	2277	2	FSM	ENSMUSG00000022883.12	ENSMUST00000231474.2	2277	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCACAGATCTTCATTGTG	NA	False	NA	NA	False	ATTAAA	-13	NA	72460071	72540279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_72461083_72539013
transcript_52782.known	chr16	-	4237	5	FSM	ENSMUSG00000032932.16	ENSMUST00000046283.16	4237	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	5.78791845139511	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAAGAGAAGG	3981	False	NA	NA	False	NA	NA	NA	75563709	75551909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_75555337_75556302_75556471_75557983_75558198_75561831_75562173_75563622
transcript_52787.known	chr16	-	4529	4	FSM	ENSMUSG00000048490.15	ENSMUST00000054178.8	4529	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	2.86744175568088	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGGATTGATGCAACTTG	NA	False	NA	NA	False	ATTAAA	-18	NA	76169937	76087749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_76091904_76127633_76127753_76149359_76149438_76169759
transcript_52791.known	chr16	-	540	3	FSM	ENSMUSG00000048490.15	ENSMUST00000231304.2	540	3	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	15.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAGAGGAGCTCTTTCACG	NA	False	NA	NA	False	NA	NA	NA	76169932	76091614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_76091904_76149359_76149438_76169759
transcript_52794.known	chr16	-	1139	2	FSM	ENSMUSG00000048490.15	ENSMUST00000145649.2	1139	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	76169937	76148476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_76149438_76169759
transcript_52795.known	chr16	-	402	1	FSM	ENSMUSG00000050299.9	ENSMUST00000052867.9	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	228	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTATTGCCACCCTGCCA	NA	False	NA	-61	True	NA	NA	NA	76200540	76200138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_76200100_76200500
transcript_52797.known	chr16	+	4776	24	FSM	ENSMUSG00000022867.12	ENSMUST00000023580.8	4776	24	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_20	12.0225056756949	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTGTGTCTATTGCTTC	NA	False	NA	NA	False	AGTAAA	-12	NA	76810593	76913668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_76811029_76830790_76830869_76834235_76834381_76845329_76845454_76847285_76847449_76852041_76852129_76856050_76856189_76859283_76859361_76865940_76866015_76868531_76868681_76871746_76871875_76872158_76872255_76873247_76873410_76873891_76874122_76877211_76877283_76878344_76878574_76880636_76880838_76890490_76890631_76904772_76904952_76906061_76906141_76907953_76908034_76910620_76910745_76911771_76911968_76912277
transcript_52803.nic	chr16	+	2961	18	ISM	ENSMUSG00000022867.12	ENSMUST00000239066.2	4986	26	-48	22852	-48	0	5prime_fragment	FALSE	canonical	3	54	junction_8	11.7334879931088	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTAAAAAGACTCAGACTAC	NA	False	NA	NA	False	AATAAA	-28	NA	76810545	76890816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_76811029_76830790_76830869_76834235_76834381_76845329_76845454_76847285_76847449_76852041_76852129_76856050_76856189_76859283_76859361_76865940_76866015_76868531_76868681_76871746_76871875_76872158_76872255_76873247_76873410_76873891_76874122_76877211_76877283_76878344_76878574_76880636_76880838_76890490
transcript_52804.nic	chr16	+	1646	11	ISM	ENSMUSG00000022867.12	ENSMUST00000239066.2	4986	26	-48	41794	-48	-18942	5prime_fragment	TRUE	canonical	3	54	junction_8	7.43236167042482	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGGTTTGTACAAGTAGT	NA	False	NA	NA	False	AATAAA	-33	NA	76810545	76871874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_76811029_76830790_76830869_76834235_76834381_76845329_76845454_76847285_76847449_76852041_76852129_76856050_76856189_76859283_76859361_76865940_76866015_76868531_76868681_76871746
transcript_52806.nic	chr16	+	925	5	ISM	ENSMUSG00000022867.12	ENSMUST00000239066.2	4986	26	-48	66288	-48	12903	5prime_fragment	FALSE	canonical	3	63	junction_3	5.8309518948453	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAGAGAAAGCTCCAGTC	NA	False	NA	NA	False	NA	NA	NA	76810545	76847380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_76811029_76830790_76830869_76834235_76834381_76845329_76845454_76847285
transcript_52807.known	chr16	+	1657	8	FSM	ENSMUSG00000022865.15	ENSMUST00000114229.4	1657	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	23.9965983983955	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAATGAACATTTTAGA	NA	False	NA	NA	False	AATAAA	-15	NA	78098643	78156662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_78098763_78122044_78122212_78125841_78126047_78130249_78130406_78131056_78131180_78131709_78131849_78133075_78133260_78156098
transcript_52809.known	chr16	+	5742	7	FSM	ENSMUSG00000022865.15	ENSMUST00000023572.15	5742	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	8.97527467855751	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCGGTGTGGCTTTATT	NA	False	NA	20	True	AATAAA	-21	NA	78098383	78137648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_78098763_78122044_78122212_78125841_78126047_78130249_78130406_78131056_78131180_78131709_78131849_78133075
transcript_5281.known	chr1	+	6327	20	FSM	ENSMUSG00000043019.13	ENSMUST00000059498.12	6327	20	0	0	0	0	multi-exon	TRUE	canonical	3	102	junction_16	20.6122358303988	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTAGTTTTAAATTTCAA	NA	False	NA	7	True	AATAAA	-16	NA	151631124	151697802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_151631479_151635488_151635535_151646582_151646684_151647160_151647201_151651607_151651721_151653156_151653311_151658123_151658259_151660489_151660596_151668078_151668177_151670426_151670553_151670730_151670815_151671816_151671901_151672533_151672659_151680028_151680195_151680415_151680571_151681600_151681755_151683116_151683309_151683954_151684121_151687269_151687456_151694060
transcript_52814.known	chr16	-	1414	5	FSM	ENSMUSG00000022863.16	ENSMUST00000023570.14	1414	5	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_4	83.7895429036345	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTTTTGTTCTGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	78173698	78156747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_78157427_78161689_78161898_78166000_78166139_78170132_78170312_78173488
transcript_52817.known	chr16	-	6127	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGAGCCTCGGTTGATT	3243	False	NA	-3	True	AATAAA	-20	NA	78373545	78337225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
transcript_52819.known	chr16	-	1576	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114219.8	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	120.034370077907	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTGCTATTTTGGGTAT	3243	False	NA	NA	False	TATAAA	-12	NA	78373545	78341576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373278
transcript_52820.known	chr16	-	1271	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114218.2	1271	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	107.072405408677	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373311
transcript_52821.known	chr16	-	2644	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3253	False	NA	NA	False	NA	NA	NA	78373535	78340430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
transcript_52822.nic	chr16	-	2676	5	NIC	ENSMUSG00000022864.15	novel	2644	5	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	108.368295640376	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3197	False	NA	NA	False	NA	NA	NA	78373591	78340430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373370
transcript_52842.known	chr16	-	523	2	FSM	ENSMUSG00000022889.8	ENSMUST00000133901.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	1018	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTCATTAAAGTATTTT	NA	False	NA	NA	False	NA	NA	NA	84532118	84531055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_84531502_84532041
transcript_52852.known	chr16	+	4370	10	FSM	ENSMUSG00000053062.17	ENSMUST00000114195.8	4370	10	0	0	0	0	multi-exon	TRUE	canonical	3	3263	junction_7	414.866630361679	1223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTATGGTCTATGAAT	NA	False	NA	17	True	AATAAA	-20	NA	84571010	84622816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615647_84615664_84618147_84618191_84619674
transcript_5287.known	chr1	-	9559	6	FSM	ENSMUSG00000032666.17	ENSMUST00000044581.14	9559	6	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_2	7.73045923603508	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGGCTCTGTTCTTTCT	NA	False	NA	NA	False	ATTAAA	-16	NA	151965876	151760274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_151769184_151791232_151791294_151796797_151796875_151856176_151856272_151882295_151882519_151965682
transcript_52876.known	chr16	+	1998	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	0	0	0	0	multi-exon	FALSE	canonical	3	4189	junction_2	31.1555238547945	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTCTTCAGAATAAACAT	NA	False	NA	NA	False	NA	NA	NA	84571273	84607884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
transcript_52884.known	chr16	+	659	7	FSM	ENSMUSG00000053062.17	ENSMUST00000138054.2	659	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	1434.94432722048	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACACTTGCAAAGTG	729	False	NA	-10	True	ATTAAA	-17	NA	84606294	84619774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615645_84615664_84618147_84618191_84619674
transcript_52888.known	chr16	+	2202	10	FSM	ENSMUSG00000008976.17	ENSMUST00000114184.8	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	83.9617784882715	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATGATATCATTCTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	84631812	84658203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
transcript_52893.known	chr16	+	4987	10	FSM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	99.7045016753055	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTTTGTTTTC	NA	False	NA	6	True	AATAAA	-15	NA	84632011	84660667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
transcript_52905.known	chr16	-	742	6	FSM	ENSMUSG00000022890.14	ENSMUST00000114191.8	742	6	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_5	3171.52603016277	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84632391	84624758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630707_84630763_84631696_84631872_84632308
transcript_52908.known	chr16	-	809	5	FSM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	2792.56360715383	2403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84632513	84624758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696_84631872_84632308
transcript_52911.nnic	chr16	-	483	4	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	66	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	3187.52906740559	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAAATGTCCTTTAAAT	NA	False	NA	-5	True	AATAAA	-15	NA	84631827	84624761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_84624884_84625312_84625438_84628216_84628322_84631696
transcript_52912.known	chr16	-	680	4	FSM	ENSMUSG00000022890.14	ENSMUST00000114193.8	680	4	0	0	0	0	multi-exon	FALSE	canonical	1	103	junction_3	3139.53779329945	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTTTAAATTCTTTGGT	NA	False	NA	3	True	AATAAA	-23	NA	84631127	84624753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630881
transcript_52914.known	chr16	-	8167	18	FSM	ENSMUSG00000022892.12	ENSMUST00000227723.2	8167	18	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	12.3870677065552	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGTCTTTCCTCTAGT	7323	False	NA	NA	False	NA	NA	NA	84970654	84746572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84837138_84837196_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
transcript_52917.known	chr16	-	3120	17	FSM	ENSMUSG00000022892.12	ENSMUST00000226232.2	3120	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	13.879925927396	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAATTAAAAAAA	7354	False	NA	NA	False	NA	NA	NA	84970623	84751531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
transcript_52920.known	chr16	-	3176	16	FSM	ENSMUSG00000022892.12	ENSMUST00000005406.12	3176	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	15.6480740738987	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAGACGTTTCTTTGAAG	7331	False	NA	-6	True	AATAAA	-19	NA	84970646	84751330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
transcript_52921.known	chr16	-	3264	16	FSM	ENSMUSG00000022892.12	ENSMUST00000227021.2	3264	16	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	17.9275083476638	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCAGGCAAGACGTTTC	7350	False	NA	-13	True	AATAAA	-12	NA	84970627	84751337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
transcript_52927.known	chr16	-	2197	14	FSM	ENSMUSG00000022892.12	ENSMUST00000227990.2	2197	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.7202714150434	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAGTCTTTCCCTTCAG	7385	False	NA	NA	False	ATTAAA	-28	NA	84970592	84791591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_84791956_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84837138_84837196_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
transcript_52929.known	chr16	-	4884	9	FSM	ENSMUSG00000022893.15	ENSMUST00000023610.15	4884	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.707106781186548	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGGCCATATTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	85600001	85590714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_85592989_85593526_85593703_85594605_85594782_85594891_85595079_85595297_85595585_85595933_85596102_85596423_85596557_85596977_85597325_85598865
transcript_52930.known	chr16	+	1884	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151072	87165630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
transcript_52933.known	chr16	+	1951	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118115.2	1951	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	12.0208152801713	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGG	NA	False	NA	NA	False	AAGAAA	-23	NA	87151132	87164573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026
transcript_52934.known	chr16	+	1700	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118310.8	1700	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	45.8768732587564	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151114	87165630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87164352
transcript_52941.known	chr16	-	7743	30	FSM	ENSMUSG00000052299.10	ENSMUST00000039449.9	7743	30	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_26	19.3535231547588	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTGGCCCATTCTTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	87229500	87173538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_87175896_87176563_87176732_87177554_87177750_87178349_87178571_87179502_87179675_87191409_87191597_87194041_87194117_87194674_87194913_87195539_87195754_87196900_87197052_87197216_87197353_87198913_87199057_87200893_87200999_87202413_87202574_87205587_87205775_87206189_87206335_87207194_87207349_87208506_87208747_87209262_87209450_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
transcript_52946.nic	chr16	-	3201	16	ISM	ENSMUSG00000052299.10	ENSMUST00000039449.9	7743	30	-14	32083	-14	4454	5prime_fragment	FALSE	canonical	3	140	junction_12	16.0996894379985	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTCCTAGAAGACAACGT	NA	False	NA	NA	False	AAAAAG	-4	NA	87229514	87205621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_87205775_87206189_87206335_87207194_87207349_87208506_87208747_87209262_87209450_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
transcript_52951.known	chr16	-	2360	12	FSM	ENSMUSG00000052299.10	ENSMUST00000232095.2	2360	12	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	51.9704302448489	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTCTTTCCTACTCAG	NA	False	NA	NA	False	NA	NA	NA	87229451	87210075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_87210177_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
transcript_52953.nic	chr16	-	2043	10	ISM	ENSMUSG00000052299.10	ENSMUST00000232095.2	2360	12	20	2517	20	-2517	5prime_fragment	FALSE	canonical	3	140	junction_6	16.5805180934407	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGCAGTTAAGTTCTTAT	NA	False	NA	NA	False	NA	NA	NA	87229431	87212592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
transcript_52956.known	chr16	-	2033	1	FSM	ENSMUSG00000041079.13	ENSMUST00000231843.2	2033	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	87237449	87235416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_87235400_87237400
transcript_52957.known	chr16	-	2009	5	FSM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	7.71362431027076	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTTGTTATCAGTAG	NA	False	NA	-4	True	AATAAA	-17	NA	87237461	87230294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_87231515_87233460_87233824_87233951_87234020_87234181_87234403_87237324
transcript_52958.known	chr16	+	3205	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATTAGAGTTTAAGT	NA	False	NA	10	True	AATAAA	-18	NA	87251590	87280405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
transcript_5296.known	chr1	-	1133	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCGTAATCATCCATCA	NA	False	NA	-5	True	AATAAA	-29	NA	152262433	152246485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
transcript_52966.known	chr16	-	2394	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	0	0	0	0	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	2113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGGTGAACATAATTTAT	NA	False	NA	-13	True	AATAAA	-28	NA	87292761	87280213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
transcript_52983.nic	chr16	-	1602	13	ISM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	-67	2253	-67	0	5prime_fragment	FALSE	canonical	3	4287	junction_7	411.023814868298	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAAGATTTGACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	87292828	87282466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
transcript_5299.known	chr1	+	4093	12	FSM	ENSMUSG00000032649.15	ENSMUST00000044311.9	4093	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.8227216050694	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCAGCCTGTGTTTCTGCC	NA	False	NA	NA	False	AATAAA	-21	NA	152275580	152386446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_152276149_152344199_152344311_152347438_152347557_152348845_152348981_152360588_152360794_152365530_152365651_152371552_152371630_152375655_152375763_152378708_152378842_152379828_152379957_152382543_152382751_152384262
transcript_52993.nic	chr16	-	1207	10	ISM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	-28	3109	-28	-708	5prime_fragment	FALSE	canonical	3	4287	junction_4	296.735572522069	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTATGTAGTAATGGTAAG	NA	False	NA	NA	False	NA	NA	NA	87292789	87283322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
transcript_53.known	ERCC-00157	+	1003	1	FSM	ERCC-00157A	DQ839618	1003	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00157_+_0_1000
transcript_53001.known	chr16	+	1405	7	FSM	ENSMUSG00000025616.15	ENSMUST00000131206.8	1405	7	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	32.3045404445464	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTGTCTCTACCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	87251930	87267912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241
transcript_53009.known	chr16	+	5867	5	FSM	ENSMUSG00000025612.6	ENSMUST00000026703.6	5867	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	14.497844667398	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGTTGTACATTTCTGT	NA	False	NA	22	True	AATAAA	-25	NA	87495832	87530234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_87495945_87512218_87512513_87515694_87517039_87519289_87519497_87526324
transcript_5301.known	chr1	-	3037	18	FSM	ENSMUSG00000026482.14	ENSMUST00000111857.3	3037	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	5.35197147002083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTATGCGTGTGTTTGT	NA	False	NA	NA	False	AATATA	-19	NA	152642102	152394500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_152394948_152397045_152397161_152400395_152400651_152404023_152404211_152407256_152407347_152409256_152409379_152412017_152412051_152413481_152413569_152415687_152415778_152420101_152420187_152424817_152424922_152428171_152428388_152430046_152430172_152433153_152433339_152447348_152447427_152462157_152462367_152550610_152550775_152641657
transcript_53017.nic	chr16	-	4417	20	NIC	ENSMUSG00000022983.17	novel	4175	20	NA	NA	-35	0	combination_of_known_junctions	TRUE	canonical	3	106	junction_9	44.5324743781235	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTAATGTGTGCTATTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	90081426	90025838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
transcript_53018.known	chr16	-	4367	20	FSM	ENSMUSG00000022983.17	ENSMUST00000232371.2	4367	20	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	57.9041619122408	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGTTAATGTGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	90081391	90025844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046941_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
transcript_53019.known	chr16	-	4266	20	FSM	ENSMUSG00000022983.17	ENSMUST00000039280.9	4266	20	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	46.4080420960757	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAAGTGCTCTCTATTTT	NA	False	NA	NA	False	TTTAAA	-33	NA	90081313	90025942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90027133_90039414_90039607_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
transcript_5302.known	chr1	-	4572	18	FSM	ENSMUSG00000026482.14	ENSMUST00000027760.14	4572	18	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_17	4.47368313925448	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGTAAAACATGGCCTCA	NA	False	NA	NA	False	AAAAAG	-17	NA	152500968	152392701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_152394948_152397045_152397161_152400395_152400651_152404023_152404211_152407256_152407347_152409256_152409379_152412017_152412051_152413481_152413569_152415687_152415778_152420101_152420187_152424817_152424922_152428171_152428388_152430046_152430172_152433153_152433339_152447348_152447427_152462157_152462367_152499568_152499680_152500734
transcript_53020.nic	chr16	-	4418	20	NIC	ENSMUSG00000022983.17	novel	4175	20	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_2	45.9499908819345	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTAATGTGTGCTATTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	90081373	90025838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_90027133_90039414_90039607_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046526_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
transcript_53022.nic	chr16	-	4239	20	NIC	ENSMUSG00000022983.17	novel	4266	20	NA	NA	-35	-74	combination_of_known_junctions	FALSE	canonical	3	106	junction_9	44.5324743781235	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGAAGATATATTACCCT	NA	False	NA	NA	False	TTTAAA	-25	NA	90081426	90026016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944_90047326_90048762_90048872_90049144_90049339_90054140_90054291_90054869_90055010_90055598_90055735_90057028_90057191_90059061_90059107_90059980_90060065_90080890
transcript_5304.known	chr1	+	1914	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	649.932817040859	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642292	152651348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
transcript_53045.known	chr16	+	641	5	FSM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	320.427351360648	389	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGTGTGACTCCTTTG	NA	False	NA	19	True	ATTAAA	-18	NA	90017641	90023217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_90017818_90019667_90019765_90021243_90021314_90022032_90022151_90023037
transcript_53047.known	chr16	+	5393	11	FSM	ENSMUSG00000053414.9	ENSMUST00000065856.8	5393	11	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	15.4272486205415	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTGCTTTGTTTATT	NA	False	NA	9	True	AATATA	-43	NA	90182900	90296441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_90183605_90229401_90229695_90244197_90244254_90250567_90250704_90261028_90261157_90269331_90269468_90272707_90272871_90278137_90278222_90284746_90284795_90290300_90290482_90292977
transcript_53052.known	chr16	-	1333	5	FSM	ENSMUSG00000022978.12	ENSMUST00000099554.5	1333	5	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_1	13.865424623862	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGGTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-25	NA	90524292	90516199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90516867_90517541_90517639_90518523_90518647_90523180_90523248_90523913
transcript_53054.known	chr16	-	7344	39	FSM	ENSMUSG00000039929.15	ENSMUST00000140920.2	7344	39	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_16	15.3989422955836	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTTTGTACTTTGTTT	8679	False	NA	-10	True	AATAAA	-16	NA	90607280	90548414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90549067_90550210_90550811_90551698_90551941_90552961_90553160_90554630_90554741_90556686_90556831_90557278_90557386_90558510_90558623_90559154_90559316_90563542_90563652_90563904_90564077_90564918_90564983_90565089_90565201_90566275_90566470_90568356_90568416_90569467_90569655_90570151_90570351_90570936_90571790_90573012_90573193_90574241_90574461_90575935_90576130_90577090_90577262_90578398_90578538_90578944_90579062_90580163_90580284_90582989_90583103_90584215_90584333_90584971_90585102_90585822_90585997_90587962_90588101_90589573_90589770_90592248_90592374_90593245_90593381_90594780_90594867_90596907_90597005_90600214_90600348_90601335_90601488_90602285_90602426_90607086
transcript_53059.known	chr16	-	2183	15	FSM	ENSMUSG00000039929.15	ENSMUST00000142955.8	2183	15	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	13.5367979211918	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGTTTTCTTTGTTTAT	8679	False	NA	NA	False	AGTAAA	-14	NA	90607280	90580030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90580284_90582989_90583103_90584215_90584333_90584971_90585102_90585822_90585997_90587962_90588101_90589573_90589770_90592248_90592374_90593245_90593381_90594780_90594867_90596907_90597005_90600214_90600348_90601335_90601488_90602285_90602426_90607086
transcript_53060.known	chr16	+	2142	8	FSM	ENSMUSG00000039903.19	ENSMUST00000037539.15	2142	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	3.62530786869986	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTAAGTTCACTCCACAG	NA	False	NA	NA	False	NA	NA	NA	90627746	90701773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_90628321_90663142_90663340_90666453_90666578_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
transcript_53062.known	chr16	+	1554	7	FSM	ENSMUSG00000039903.19	ENSMUST00000099543.10	1554	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	5.40575824674228	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTATCTGTACATTAATAA	NA	False	NA	NA	False	AATAAA	-28	NA	90628000	90701583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_90628321_90663142_90663340_90666453_90666578_90672926_90673080_90691465_90691544_90694251_90694342_90700991
transcript_53063.known	chr16	+	1692	6	FSM	ENSMUSG00000039903.19	ENSMUST00000231280.2	1692	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	5.2687759489278	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTAAGTTCACTCCACAG	NA	False	NA	NA	False	NA	NA	NA	90627875	90701773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_90628321_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
transcript_53064.known	chr16	-	1430	7	FSM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	16.7994708911389	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGTGTCATGAGAGC	NA	False	NA	2	True	NA	NA	NA	90732002	90722696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
transcript_53066.known	chr16	-	1014	6	FSM	ENSMUSG00000022972.11	ENSMUST00000125519.8	1014	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	296.303493060747	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACACTTGACTGTCAGAA	NA	False	NA	-65	True	CATAAA	-19	NA	90731815	90722857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90727881_90728050_90731469
transcript_53076.nic	chr16	-	5836	29	NIC	ENSMUSG00000022973.19	novel	7090	32	NA	NA	-50	-978	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	16.9314343570695	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAACAAAAAAAAAACAAAA	2346	False	NA	NA	False	AATACA	-37	NA	90808051	90733971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_90735923_90741242_90741464_90741686_90741796_90743679_90743751_90747238_90747374_90748687_90748898_90752196_90752360_90754481_90754561_90757131_90757348_90757447_90757566_90758261_90758419_90760705_90760865_90761100_90761294_90761392_90761534_90764187_90764273_90766070_90766263_90768451_90768476_90770797_90770964_90773486_90773640_90775576_90775659_90776638_90776809_90777836_90777934_90778695_90778758_90784227_90784312_90785029_90785256_90788267_90788536_90790828_90790916_90806911_90807058_90807980
transcript_5308.known	chr1	+	1737	3	FSM	ENSMUSG00000008475.14	ENSMUST00000097536.6	1737	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642292	152651348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_152642619_152644611_152644685_152650010
transcript_53083.known	chr16	-	2732	18	FSM	ENSMUSG00000022974.13	ENSMUST00000023698.12	2732	18	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_10	93.9504028766883	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAATGAAAGGAACTCAG	NA	False	NA	7	True	AATACA	-41	NA	90841052	90811803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827303_90827445_90830985_90831176_90831687_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440_90839570_90840893
transcript_53092.known	chr16	-	3973	18	FSM	ENSMUSG00000022974.13	ENSMUST00000118522.8	3973	18	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_10	93.8519042470415	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTATCTTGCTGG	NA	False	NA	0	True	ATTAAA	-18	NA	90841431	90810924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827320_90827445_90830985_90831176_90831687_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440_90839570_90840893
transcript_53093.known	chr16	-	2743	19	FSM	ENSMUSG00000022973.19	ENSMUST00000118246.3	2743	19	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_18	12.0836845415116	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAACGCATCTCCATTCCT	2448	False	NA	NA	False	AATAAA	-17	NA	90807949	90757379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_90757566_90758261_90758419_90760705_90760865_90761100_90761294_90761392_90761534_90764187_90764273_90766070_90766263_90770797_90770964_90773486_90773640_90775576_90775659_90776638_90776809_90777836_90777934_90778695_90778758_90784227_90784312_90785029_90785256_90788267_90788536_90790828_90790916_90806911_90807058_90807860
transcript_53094.known	chr16	+	2162	1	FSM	ENSMUSG00000046160.7	ENSMUST00000056882.7	2162	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACGTTTTTCGTCTGT	2417	False	NA	NA	False	AATAAA	-16	NA	91066659	91068821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91066700_91068800
transcript_53095.known	chr16	+	3047	9	FSM	ENSMUSG00000022971.19	ENSMUST00000023693.14	3047	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	21.683807322516	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATAGTCTTTTTGAATC	NA	False	NA	9	True	AATACA	-21	NA	91169670	91202477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644_91190802_91196105_91196234_91200597
transcript_53098.known	chr16	+	1099	7	FSM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	3.19722101554181	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91169737	91190928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644
transcript_53099.known	chr16	+	1850	7	FSM	ENSMUSG00000022969.14	ENSMUST00000023691.12	1850	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1.63299316185545	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGTTTGTTCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	91203122	91222722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91203261_91204505_91204630_91208770_91208929_91211500_91211668_91216219_91216368_91218620_91218779_91221765
transcript_53101.known	chr16	+	807	6	FSM	ENSMUSG00000022971.19	ENSMUST00000134491.9	807	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	21.5462293684997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATCTCCCTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	91169728	91190751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91184831_91185005_91188608_91188767_91190644
transcript_53105.known	chr16	+	3909	11	FSM	ENSMUSG00000022967.14	ENSMUST00000023689.11	3909	11	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	11.4908659377786	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATATTTTCTTTATTTA	NA	False	NA	24	True	NA	NA	NA	91282125	91304329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91282305_91286583_91286708_91289518_91289698_91292036_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942
transcript_53106.known	chr16	+	2771	12	FSM	ENSMUSG00000022967.14	ENSMUST00000117748.8	2771	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	50.2529140637717	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATATTTTCTTTATTTA	NA	False	NA	24	True	NA	NA	NA	91282151	91304329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91282305_91286583_91286708_91289518_91289698_91292036_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942_91302303_91303414
transcript_53107.known	chr16	+	2234	2	FSM	ENSMUSG00000022967.14	ENSMUST00000145008.2	2234	2	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATTTAAG	NA	False	NA	NA	False	NA	NA	NA	91282164	91288677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91282305_91286583
transcript_53108.known	chr16	+	3708	7	FSM	ENSMUSG00000022965.9	ENSMUST00000023687.9	3708	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	4.14996653266291	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGATTGACTCCTGTGCTA	NA	False	NA	NA	False	AATAAA	-12	NA	91343959	91362511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91344121_91351835_91351969_91354772_91354967_91356864_91357014_91357432_91357593_91358507_91358666_91359758
transcript_5311.known	chr1	+	2596	15	FSM	ENSMUSG00000026480.13	ENSMUST00000027754.7	2596	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	6.91382820210072	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGCTTGGAGAGAACAC	559	False	NA	NA	False	AATAAA	-14	NA	152683640	152712741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_152683957_152686668_152686752_152692741_152692851_152697266_152697402_152699967_152700076_152701632_152701693_152703168_152703213_152706102_152706245_152706443_152706513_152707364_152707441_152709073_152709097_152709527_152709680_152709819_152709932_152710777_152710956_152711752
transcript_53112.known	chr16	-	2347	7	FSM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	6.43989302878722	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGAATCTGAGTCTTTT	NA	False	NA	-6	True	AATAAA	-24	NA	91394688	91371390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91380163_91380277_91383829_91383970_91394469
transcript_53128.known	chr16	-	3276	22	FSM	ENSMUSG00000022962.16	ENSMUST00000232289.2	3276	22	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_21	338.409230453656	2973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTATCTAGCA	NA	False	NA	NA	False	AATAAA	-12	NA	91443819	91418291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
transcript_53182.known	chr16	-	1852	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_10	453.295984981116	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-22	NA	91443813	91430292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
transcript_53195.known	chr16	-	3368	2	FSM	ENSMUSG00000039763.11	ENSMUST00000049244.10	3368	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGGTCCATTGATCT	9249	False	NA	NA	False	AATAAA	-16	NA	91415887	91411141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91414268_91415645
transcript_53196.known	chr16	-	3246	21	FSM	ENSMUSG00000022962.16	ENSMUST00000156713.8	3246	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	429.171000301745	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTAGCATTTATTTAAGA	1507	False	NA	NA	False	AATAAA	-23	NA	91440034	91418280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433390_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844
transcript_53199.known	chr16	+	8399	12	FSM	ENSMUSG00000022961.19	ENSMUST00000114037.9	8399	12	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_11	95.0516171212009	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTCTTATTCTCTGG	NA	False	NA	14	True	AATAAA	-1	NA	91444766	91476083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91474988
transcript_53201.known	chr16	+	8731	12	FSM	ENSMUSG00000022961.19	ENSMUST00000117633.8	8731	12	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_11	92.9729366114073	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTGGCTTTTATGGAAC	NA	False	NA	26	True	AATAAA	-13	NA	91444393	91476095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91475041
transcript_53203.known	chr16	-	2215	10	FSM	ENSMUSG00000022960.14	ENSMUST00000117159.8	2215	10	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	60.5189491802075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTGGGTAAGAAACAAAT	NA	False	NA	-1	True	AATAAA	-19	NA	91485653	91476152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91476915_91478044_91478113_91478982_91479182_91479403_91479509_91479630_91479710_91480520_91480700_91481189_91481369_91483054_91483259_91484682_91484764_91485294
transcript_53208.known	chr16	-	2365	10	FSM	ENSMUSG00000022960.14	ENSMUST00000023682.12	2365	10	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_4	21.061344850545	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTGGGTAAGAAACAAAT	NA	False	NA	-1	True	AATAAA	-19	NA	91485658	91476152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91476915_91478044_91478258_91478982_91479182_91479403_91479509_91479630_91479710_91480520_91480700_91481189_91481369_91483054_91483259_91484682_91484764_91485294
transcript_5321.known	chr1	-	3928	23	FSM	ENSMUSG00000042772.16	ENSMUST00000111836.4	3928	23	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	70.0173089579927	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGCTTTGCTGACTGAG	NA	False	NA	NA	False	AATAAA	-15	NA	152778397	152714620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152718980_152719131_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
transcript_53220.known	chr16	-	2147	9	FSM	ENSMUSG00000022960.14	ENSMUST00000114031.8	2147	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	63.4693577641999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTGGGTAAGAAACAAAT	NA	False	NA	-1	True	AATAAA	-19	NA	91485653	91476152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91476915_91478982_91479182_91479403_91479509_91479630_91479710_91480520_91480700_91481189_91481369_91483054_91483259_91484682_91484764_91485294
transcript_53229.known	chr16	-	1965	13	FSM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	0	0	0	0	multi-exon	FALSE	canonical	1	405	junction_2	358.43629334777	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCTGAATTTCTCCGA	8828	False	NA	NA	False	TTTAAA	-18	NA	91525863	91486209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
transcript_53273.known	chr16	-	1154	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	469.417790170329	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTTTTTCTCTTTTTT	9102	False	NA	NA	False	AATAAA	-24	NA	91525589	91491225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
transcript_53284.known	chr16	-	762	6	FSM	ENSMUSG00000058240.15	ENSMUST00000141664.9	762	6	0	0	0	0	multi-exon	FALSE	canonical	3	1466	junction_2	55.2268050859363	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTATTTGGTTTTTGTT	9203	False	NA	NA	False	TTTAAA	-2	NA	91525488	91503730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
transcript_53286.known	chr16	-	600	3	FSM	ENSMUSG00000058240.15	ENSMUST00000128975.8	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	1575	junction_1	12	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTAGG	9205	False	NA	NA	False	NA	NA	NA	91525486	91511227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91511715_91514291_91514364_91525445
transcript_53289.known	chr16	+	5364	29	FSM	ENSMUSG00000022957.21	ENSMUST00000056482.14	5364	29	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_18	26.3675937468704	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAAACGTCTCTGTGTT	NA	False	NA	9	True	ATTAAA	-19	NA	91526258	91668543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081_91625222_91633948_91634077_91636503_91636731_91638376_91638499_91645609_91645858_91647693_91647854_91650582_91650789_91651460_91651544_91655096_91655264_91658081_91658128_91660144_91660267_91664907_91665026_91666505_91666698_91667080
transcript_53309.nic	chr16	+	3542	21	ISM	ENSMUSG00000022957.21	ENSMUST00000056482.14	5364	29	-87	20202	3	137	5prime_fragment	FALSE	canonical	3	117	junction_18	19.7557586541241	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAAATGCCCGTCCTGGA	NA	False	NA	NA	False	AATAAA	-27	NA	91526171	91648341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081_91625222_91633948_91634077_91636503_91636731_91638376_91638499_91645609_91645858_91647693
transcript_53314.known	chr16	+	6103	16	FSM	ENSMUSG00000022957.21	ENSMUST00000095909.10	6103	16	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	15.0928975202098	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTCTCCTGAAAGTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	91526257	91629241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91526488_91579048_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081
transcript_53318.known	chr16	+	1167	7	FSM	ENSMUSG00000022957.21	ENSMUST00000232198.2	1167	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	3.24893144826965	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTATGGTCTCATCATGG	NA	False	NA	NA	False	NA	NA	NA	91700950	91709088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91701102_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
transcript_53324.known	chr16	-	838	7	FSM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	5653	junction_6	394.832348387684	3680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGGAGCCTTGTCCTTT	811	False	NA	-1	True	AATAAA	-20	NA	91728575	91722101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
transcript_53329.known	chr16	-	560	6	FSM	ENSMUSG00000022956.12	ENSMUST00000155452.8	560	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2452.38509210931	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGGCGTGAGGAGCCTT	952	False	NA	-8	True	AATAAA	-13	NA	91728434	91722108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91725786_91725898_91727241_91727293_91728407
transcript_5334.nnic	chr1	-	3709	23	NNC	ENSMUSG00000042772.16	novel	3928	23	NA	NA	-10	-216	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_21	74.1391504966413	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCAGGAACTCTCGTTCC	NA	False	NA	NA	False	AAAAAG	-7	NA	152778407	152714836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152753791_152753929_152778259
transcript_53342.known	chr16	+	846	3	FSM	ENSMUSG00000039680.11	ENSMUST00000047429.9	846	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	10.5	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACGGCTGTATTGCTTCT	6285	False	NA	5	True	AATAAA	-17	NA	91855157	91909115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91855369_91896481_91896622_91908620
transcript_53343.known	chr16	+	10913	2	FSM	ENSMUSG00000089774.3	ENSMUST00000113975.3	10913	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCTGTGCCTCAGTGTG	6337	False	NA	12	True	AATAAA	-13	NA	91855209	91884361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_91855369_91873607
transcript_53344.known	chr16	+	517	4	FSM	ENSMUSG00000051989.12	ENSMUST00000063641.11	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	48.3482735529983	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCTGCATTCTCTCT	NA	False	NA	26	True	AATAAA	-16	NA	92098173	92109929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_92098232_92102175_92102286_92107688_92107858_92109749
transcript_53346.known	chr16	-	2319	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232239.2	2319	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	18.4932420089069	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	False	NA	-5	True	AATAAA	-22	NA	92263031	92188842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92262720
transcript_53347.known	chr16	-	1506	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232197.2	1506	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	133.157383906747	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCATATCTTAGTACCT	NA	False	NA	NA	False	GATAAA	-16	NA	92267755	92189397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92267702
transcript_53351.known	chr16	-	2190	4	FSM	ENSMUSG00000022951.17	ENSMUST00000023672.10	2190	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	123.764112551077	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	False	NA	-5	True	AATAAA	-22	NA	92196965	92188842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92196783
transcript_53352.known	chr16	+	3758	6	FSM	ENSMUSG00000022949.10	ENSMUST00000023670.4	3758	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	1.01980390271856	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATCGTTTTTCTTTAGT	2566	False	NA	NA	False	ATTAAA	-14	NA	92295021	92338131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_92296446_92324947_92325058_92325583_92325710_92326756_92326864_92327643_92327826_92336322
transcript_53355.known	chr16	-	1826	12	FSM	ENSMUSG00000022948.17	ENSMUST00000233931.2	1826	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	41.4330087596355	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93400703	93380347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400100_93400453
transcript_5336.known	chr1	-	5767	22	FSM	ENSMUSG00000042772.16	ENSMUST00000073441.13	5767	22	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	55.4427244244903	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGGTGTGTAGAGGATTT	NA	False	NA	-3	True	ATTAAA	-19	NA	152778373	152712745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
transcript_53363.nic	chr16	-	1777	11	NIC	ENSMUSG00000022948.17	novel	1826	12	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_10	28.7090578041147	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93400729	93380347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
transcript_53364.nnic	chr16	-	1720	11	NIC	ENSMUSG00000022948.17	novel	1826	12	NA	NA	-129	0	combination_of_known_splicesites	TRUE	canonical	3	12	junction_10	36.3512035564161	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93401080	93380347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400861
transcript_5338.nic	chr1	-	5790	22	NIC	ENSMUSG00000042772.16	novel	5792	23	NA	NA	-138	0	combination_of_known_junctions	FALSE	canonical	3	176	junction_5	39.6466250175655	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCGGTGTGTAGAGGATT	NA	False	NA	-4	True	ATTAAA	-18	NA	152778535	152712746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
transcript_53380.known	chr16	-	744	3	FSM	ENSMUSG00000022948.17	ENSMUST00000233981.2	744	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	7.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93383519	93380347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_93380573_93382066_93382191_93383124
transcript_53381.known	chr16	+	593	3	FSM	ENSMUSG00000051483.10	ENSMUST00000231762.2	593	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	210.5	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTGTGGAAGATACAAAG	NA	False	NA	NA	False	GGGGCT	-9	NA	93404776	93406805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93405143_93405676_93405785_93406686
transcript_53383.known	chr16	+	1170	3	FSM	ENSMUSG00000022947.9	ENSMUST00000039620.7	1170	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	11	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATTTGGTTTTTGTTTGT	NA	False	NA	20	True	ATTAAA	-22	NA	93480102	93487878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93480502_93481934_93482043_93487215
transcript_53384.known	chr16	+	7319	37	FSM	ENSMUSG00000022946.11	ENSMUST00000045004.11	7319	37	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_4	15.0894452523839	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAATTGTCATGTGTATAG	NA	False	NA	20	True	AATAAA	-23	NA	93508791	93607476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856_93537028_93544351_93544542_93546011_93546111_93546777_93546902_93549011_93549122_93549722_93549838_93552337_93552459_93553963_93554084_93556514_93556618_93557179_93557372_93558920_93559600_93560045_93560318_93560779_93560933_93562325_93562427_93563013_93563205_93566281_93567915_93568633_93568746_93570808_93570998_93573774_93573898_93574246_93574382_93577644_93577701_93579088_93579194_93579299_93579367_93589974_93590120_93595793_93595874_93596794_93596905_93596988_93597136_93598448_93598511_93600349_93600479_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
transcript_53386.nic	chr16	+	4212	18	NIC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	-51	0	combination_of_known_junctions	TRUE	non_canonical	1	16	junction_3	200.230766521011	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGTAACTGAAAGTTAT	1037	False	NA	16	True	AATAAA	-27	NA	93629071	93672961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_93629237_93638258_93638332_93641081_93641215_93641840_93641937_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
transcript_53391.known	chr16	+	4178	17	FSM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	0	0	0	0	multi-exon	TRUE	non_canonical	1	193	junction_4	108.324454764379	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGTAACTGAAAGTTA	974	False	NA	15	True	AATAAA	-26	NA	93629008	93672960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
transcript_5341.nic	chr1	-	3684	22	NIC	ENSMUSG00000042772.16	novel	3928	23	NA	NA	-122	-216	combination_of_known_junctions	FALSE	canonical	3	176	junction_5	39.6466250175655	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCAGGAACTCTCGTTCC	NA	False	NA	NA	False	AAAAAG	-7	NA	152778519	152714836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
transcript_53427.known	chr16	+	1189	4	FSM	ENSMUSG00000022946.11	ENSMUST00000226335.2	1189	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	5.24933858267454	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	93508818	93537562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856
transcript_53432.nnic	chr16	-	2911	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-367	857	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTAGTTCACATAAGCA	6204	False	NA	NA	False	NA	NA	NA	93592156	93588166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_93590271_93590397_93590505_93591456
transcript_53433.nnic	chr16	-	2057	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-367	3	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACACCTTTAAATAATATAA	6204	False	NA	NA	False	AATAAA	-31	NA	93592156	93589020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_93590271_93590397_93590505_93591456
transcript_53435.known	chr16	-	1580	2	FSM	ENSMUSG00000097768.3	ENSMUST00000180967.3	1580	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACACCTTTAAATAATA	6571	False	NA	NA	False	AATAAA	-28	NA	93591789	93589023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_93590271_93591456
transcript_53436.known	chr16	+	1298	11	FSM	ENSMUSG00000039456.11	ENSMUST00000201754.4	1298	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	274.424853101901	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGTGAAAAAAAATGCAGA	1116	False	NA	NA	False	AATGAA	-4	NA	93629150	93657432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93641840_93641937_93642027_93642243_93644170_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380
transcript_53440.known	chr16	+	1922	14	FSM	ENSMUSG00000022945.13	ENSMUST00000023666.11	1922	14	0	0	0	0	multi-exon	FALSE	canonical	3	827	junction_1	52.2487224157954	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	4366	False	NA	21	True	AATAAA	-29	NA	93680788	93703003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
transcript_53443.known	chr16	+	1894	14	FSM	ENSMUSG00000022945.13	ENSMUST00000117099.8	1894	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	247.655157271309	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAAATAAACACTCATGAA	4389	False	NA	-17	True	NA	NA	NA	93680811	93702965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93680864_93681320_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
transcript_53456.known	chr16	+	2828	7	FSM	ENSMUSG00000022945.13	ENSMUST00000124313.8	2828	7	0	0	0	0	multi-exon	FALSE	canonical	3	827	junction_1	65.6649745974891	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAAAAAGATAGCATG	4396	False	NA	NA	False	NA	NA	NA	93680818	93691176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001
transcript_53457.known	chr16	+	611	2	FSM	ENSMUSG00000022945.13	ENSMUST00000128316.2	611	2	0	0	0	0	multi-exon	FALSE	canonical	3	911	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTGTGTGTGCTGACT	NA	False	NA	16	True	AATAAA	-24	NA	93701580	93702998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93701986_93702792
transcript_53458.known	chr16	-	1457	3	FSM	ENSMUSG00000047109.14	ENSMUST00000050962.5	1457	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATCCATCGGGTTGGT	6700	False	NA	NA	False	AATAAA	-18	NA	93809696	93715919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_93716926_93739155_93739294_93809383
transcript_53460.nnic	chr16	+	1148	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-670	1914	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_3	36.1693547388148	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCTGGCTCCGCGTGATT	2194	False	NA	15	True	NA	NA	NA	93811629	93815009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814572
transcript_53463.nnic	chr16	+	2665	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-670	1914	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	116.802777744748	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCTGGCTCCGCGTGATT	2194	False	NA	15	True	NA	NA	NA	93811629	93815009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_93811971_93812291_93812370_93812713_93814317_93814366
transcript_53466.nnic	chr16	+	2663	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-670	1913	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	116.802777744748	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCCTGGCTCCGCGTGAT	2194	False	NA	14	True	NA	NA	NA	93811629	93815008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_93811971_93812291_93812370_93812713_93814367_93814417
transcript_53478.known	chr16	+	383	1	FSM	ENSMUSG00000116939.2	ENSMUST00000232441.2	383	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTCTGGTGTGTACACA	7365	False	NA	NA	False	NA	NA	NA	93816800	93817183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_93816800_93817200
transcript_53479.known	chr16	-	4021	11	FSM	ENSMUSG00000040820.17	ENSMUST00000227141.2	4021	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	5.0438080851674	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	94091145	93931270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_93932825_93933859_93934074_93935507_93935623_93939667_93939829_93942207_93942276_94031922_94032195_94063450_94063634_94068234_94069167_94069394_94069558_94088650_94088786_94090921
transcript_53482.known	chr16	-	5371	11	FSM	ENSMUSG00000040820.17	ENSMUST00000163193.9	5371	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	12.9614813968157	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGGTTTTAATGGTATCT	NA	False	NA	NA	False	ATTAAA	-15	NA	94114422	93929742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_93932825_93933859_93934074_93935507_93935623_93939667_93939829_93942207_93942276_94031922_94032195_94063450_94063634_94068234_94069167_94069394_94069558_94088650_94088786_94114376
transcript_53486.nic	chr16	-	2550	10	ISM	ENSMUSG00000040820.17	ENSMUST00000227141.2	4021	11	-20	2526	-20	65	5prime_fragment	FALSE	canonical	3	37	junction_4	4.93913572686508	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTCTGATAGTTTATT	NA	False	NA	NA	False	TTTAAA	-34	NA	94091165	93933796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_93934074_93935507_93935623_93939667_93939829_93942207_93942276_94031922_94032195_94063450_94063634_94068234_94069167_94069394_94069558_94088650_94088786_94090921
transcript_53489.known	chr16	-	3388	6	FSM	ENSMUSG00000040820.17	ENSMUST00000226776.2	3388	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	3.26190128606002	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAAAGTAAACACT	NA	False	NA	NA	False	NA	NA	NA	94091129	94030427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_94032195_94063450_94063634_94068234_94069167_94069394_94069558_94088650_94088786_94090921
transcript_5349.nic	chr1	-	2535	17	ISM	ENSMUSG00000042772.16	ENSMUST00000111836.4	3928	23	-28	5363	-28	1029	5prime_fragment	FALSE	canonical	3	190	junction_3	35.8433549455126	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCTTTCCCCATGGAG	NA	False	NA	NA	False	AATACA	-24	NA	152778425	152719983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
transcript_53490.known	chr16	+	1531	4	FSM	ENSMUSG00000022941.9	ENSMUST00000023660.9	1531	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.63299316185545	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGACAATCATCTTTTT	NA	False	NA	7	True	AATAAA	-15	NA	94129278	94137794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94129457_94130204_94130281_94134114_94134183_94136585
transcript_53492.known	chr16	+	7415	46	FSM	ENSMUSG00000040785.20	ENSMUST00000117648.9	7415	46	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_37	31.7357141963995	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCGTTCACTGTCGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	94171476	94270079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171721_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
transcript_53493.known	chr16	+	3630	33	FSM	ENSMUSG00000040785.20	ENSMUST00000151770.8	3630	33	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_31	21.7255385074225	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAGAAAAACATGAAA	NA	False	NA	NA	False	AAAAAG	-25	NA	94171639	94243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171721_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240046_94240209_94243329
transcript_53494.known	chr16	+	3771	33	FSM	ENSMUSG00000040785.20	ENSMUST00000155692.8	3771	33	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	20.5650644297556	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAGAAAAA	NA	False	NA	NA	False	AAAAAG	-18	NA	94171604	94243531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171831_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329
transcript_53495.known	chr16	+	3614	32	FSM	ENSMUSG00000040785.20	ENSMUST00000143145.8	3614	32	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	19.9392417378948	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAGAAAAACATGAAA	NA	False	NA	NA	False	AAAAAG	-25	NA	94171615	94243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171721_94184770_94184926_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329
transcript_53510.nic	chr16	+	2670	23	NIC	ENSMUSG00000040785.20	novel	3614	32	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	18.267355610261	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAGAAAAACATGAAA	NA	False	NA	NA	False	AAAAAG	-25	NA	94171583	94243538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_+_94171721_94204172_94204228_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329
transcript_53513.known	chr16	+	2572	22	FSM	ENSMUSG00000040785.20	ENSMUST00000152117.8	2572	22	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	19.8233697033213	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAGAAAGAAGAA	NA	False	NA	NA	False	AAAAAG	-15	NA	94171625	94243528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171721_94204172_94204228_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329
transcript_53516.known	chr16	+	2180	20	FSM	ENSMUSG00000040785.20	ENSMUST00000150346.8	2180	20	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	18.09914217217	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAGAAGCCAAAAGA	NA	False	NA	NA	False	AAAACA	-6	NA	94171601	94235204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171721_94204172_94204228_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174
transcript_53520.known	chr16	+	1607	17	FSM	ENSMUSG00000040785.20	ENSMUST00000153988.9	1607	17	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	14.9101475512484	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGTTAGCACAAGAAA	NA	False	NA	NA	False	NA	NA	NA	94171607	94228712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171721_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649
transcript_53528.known	chr16	+	3781	11	FSM	ENSMUSG00000040785.20	ENSMUST00000119131.3	3781	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	14.2197046382828	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCACTTTTGTAGAACT	NA	False	NA	NA	False	AGTAAA	-12	NA	94171656	94198054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171721_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94195193
transcript_53533.known	chr16	+	2973	10	FSM	ENSMUSG00000040785.20	ENSMUST00000145432.8	2973	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	18.1720175605853	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATGATGTATGAATTTCA	NA	False	NA	NA	False	NA	NA	NA	94171608	94197241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171721_94184770_94184926_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94195193
transcript_53538.known	chr16	-	966	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171553	94165305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
transcript_53539.known	chr16	-	745	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_4	117.933243828871	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171571	94165305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
transcript_53540.known	chr16	-	758	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113905.8	758	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	183.830084589003	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171874	94165305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171753
transcript_53543.known	chr16	-	912	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113914.8	912	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	179.103845575688	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171874	94165305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171599
transcript_53544.known	chr16	+	416	4	FSM	ENSMUSG00000040785.20	ENSMUST00000130960.8	416	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	27.1825107171668	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCAGGTAAGAGAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	94171609	94217219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94171831_94204172_94204228_94216807_94216869_94217140
transcript_53547.known	chr16	-	2547	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGACTGCATATTGT	NA	False	NA	-13	True	AATAAA	-23	NA	94327689	94298641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
transcript_5355.known	chr1	+	4626	11	FSM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.445200942887	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGAGTCTTGTGTCTTTGT	5993	False	NA	13	True	AATAAA	-14	NA	152830748	152995007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_152830945_152949542_152949632_152950418_152950487_152952654_152952734_152962082_152962210_152964529_152964611_152966242_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313
transcript_53554.known	chr16	-	594	2	FSM	ENSMUSG00000022898.14	ENSMUST00000142988.2	594	2	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGTTCCCCAAATTTAG	NA	False	NA	NA	False	NA	NA	NA	94327276	94312718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_94313233_94327196
transcript_53561.known	chr16	+	5759	12	FSM	ENSMUSG00000022897.16	ENSMUST00000119878.8	5759	12	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_3	29.752977488337	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTTTTAAAATGGATT	72	False	NA	20	True	AGTAAA	-22	NA	94370868	94495926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94371394_94412277_94412364_94460355_94460553_94464600_94464721_94466774_94466964_94469663_94469812_94472161_94472449_94474195_94474343_94478310_94478452_94485893_94486201_94487337_94487463_94492439
transcript_53562.known	chr16	+	5754	12	FSM	ENSMUSG00000022897.16	ENSMUST00000023614.5	5754	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	51.1867428601205	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTTTTTTTTTTTTCAT	969	False	NA	NA	False	AATAAA	-11	NA	94371765	94496376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_94371836_94412277_94412364_94460355_94460553_94464600_94464721_94466774_94466964_94469663_94469812_94472161_94472449_94474195_94474343_94478310_94478452_94485893_94486201_94487337_94487463_94492439
transcript_53568.nnic	chr16	+	871	5	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	11.3247516529061	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGGTTGTGGTTTCCTG	NA	False	NA	3	True	AATAAA	-13	NA	94656116	94670829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Intergenic_chr16_+_94656205_94659190_94659253_94667462_94667539_94669776_94670200_94670607
transcript_53573.nnic	chr16	+	930	5	NNC	ENSMUSG00000116641.2	novel	1200	5	NA	NA	22152	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	5.44862367942584	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGAACCATTATTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	94544904	94554297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_+_94545201_94549749_94549952_94553485_94553564_94553805_94553999_94554136
transcript_53578.known	chr16	+	3890	10	FSM	ENSMUSG00000022895.17	ENSMUST00000023612.17	3890	10	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	14.5890200552621	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTTTGTAATGTTGGATT	NA	False	NA	21	True	AATAAA	-21	NA	95502941	95522095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_95503512_95507287_95507360_95510815_95510928_95512699_95512820_95513129_95513331_95515380_95515465_95516010_95516230_95517077_95517342_95518891_95519011_95519966
transcript_53582.known	chr16	+	928	5	FSM	ENSMUSG00000022895.17	ENSMUST00000233499.2	928	5	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	14.8744747806435	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGGTGGCAGGTGGGT	NA	False	NA	NA	False	NA	NA	NA	95503366	95513608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_95503512_95507287_95507360_95510815_95510928_95512699_95512820_95513129
transcript_53586.known	chr16	-	1044	7	FSM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_3	73.0062782688357	614	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAACTTTATTTTCTTAA	NA	False	NA	-10	True	AATAAA	-16	NA	95792160	95781132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691_95790799_95791953
transcript_53595.nic	chr16	-	3218	23	ISM	ENSMUSG00000022914.18	ENSMUST00000232755.2	9843	41	-304	36591	-225	0	5prime_fragment	FALSE	canonical	3	75	junction_10	134.456327973924	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAGAAAAACAAACCAAGA	NA	False	NA	NA	False	AAGAAA	-18	NA	95883951	95837061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_95837252_95839090_95839186_95842451_95842584_95844200_95844295_95845663_95845848_95847544_95847734_95848134_95848361_95848518_95848648_95853724_95853860_95855031_95855183_95857314_95857414_95858662_95858704_95859882_95859984_95860781_95860853_95862198_95862300_95865949_95866172_95867224_95867386_95867695_95867795_95869676_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
transcript_53596.nnic	chr16	-	3239	23	NNC	ENSMUSG00000022914.18	novel	9843	41	NA	NA	-225	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_14	137.370322020081	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAGAAAAACAAACCAAGA	NA	False	NA	NA	False	AAGAAA	-18	NA	95883951	95837061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr16_-_95837252_95839090_95839186_95842451_95842584_95844200_95844295_95845663_95845848_95847544_95847734_95848134_95848361_95848518_95848648_95853724_95853860_95855031_95855183_95857314_95857414_95858662_95858704_95859882_95859984_95860781_95860874_95862198_95862300_95865949_95866172_95867224_95867386_95867695_95867795_95869676_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
transcript_53598.nic	chr16	-	2800	21	ISM	ENSMUSG00000022914.18	ENSMUST00000232755.2	9843	41	-226	42036	-147	4915	5prime_fragment	FALSE	canonical	3	75	junction_8	139.431380972864	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTGACCAGTGTGAATTAT	NA	False	NA	NA	False	AAGAAA	-1	NA	95883873	95842506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_95842584_95844200_95844295_95845663_95845848_95847544_95847734_95848134_95848361_95848518_95848648_95853724_95853860_95855031_95855183_95857314_95857414_95858662_95858704_95859882_95859984_95860781_95860853_95862198_95862300_95865949_95866172_95867224_95867386_95867695_95867795_95869676_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
transcript_53603.known	chr16	-	2382	5	FSM	ENSMUSG00000022914.18	ENSMUST00000113827.4	2382	5	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_4	11.1214882097676	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTAAGTATTCTATAAAATC	NA	False	NA	45	True	AATAAA	-17	NA	95883726	95867867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
transcript_53604.known	chr16	-	8547	42	FSM	ENSMUSG00000022914.18	ENSMUST00000099502.9	8547	42	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_1	104.803212097307	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTTTGGTCTCTTTAT	NA	False	NA	-3	True	NA	NA	NA	95883628	95793291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_95795178_95803633_95804555_95809919_95810769_95811019_95811188_95812909_95813137_95814908_95815076_95817307_95817461_95818780_95818925_95820618_95820661_95820878_95820955_95822415_95822542_95824602_95824724_95824920_95825077_95828544_95828607_95829376_95829489_95831834_95831918_95832726_95832852_95834784_95834893_95834967_95835094_95837061_95837252_95839090_95839186_95842451_95842584_95844200_95844295_95845663_95845848_95847544_95847734_95848134_95848361_95848518_95848648_95853724_95853860_95855031_95855183_95857314_95857414_95858662_95858704_95859882_95859984_95860781_95860853_95862198_95862300_95865949_95866172_95867224_95867386_95867695_95867795_95869676_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
transcript_53606.known	chr16	-	2174	6	FSM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	0	0	0	0	multi-exon	FALSE	canonical	3	5886	junction_4	404.27841891449	2055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGAAGCCATTTATTT	NA	False	NA	NA	False	NA	NA	NA	95928929	95921817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
transcript_53610.known	chr16	-	261	5	FSM	ENSMUSG00000040681.17	ENSMUST00000233292.2	261	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	2860.52323666493	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCCATCACGTCTGTCAG	NA	False	NA	NA	False	NA	NA	NA	95928804	95923575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928631_95928662_95928789
transcript_53622.known	chr16	+	2495	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGAAAGCGTGCTTC	NA	False	NA	30	True	AATAAA	-24	NA	95946606	95959052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
transcript_53627.known	chr16	+	2415	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233566.2	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	163.242832069963	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGGTACTGTGGAAAGCG	NA	False	NA	24	True	AATAAA	-18	NA	95946612	95959046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_95946779_95953012_95953179_95955280_95955396_95957078
transcript_53628.known	chr16	+	406	3	FSM	ENSMUSG00000023147.18	ENSMUST00000233273.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	173.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAGCTACAAGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	95946617	95957157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_95946779_95953012_95953179_95957078
transcript_53629.known	chr16	+	1101	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233227.2	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	29.6348143611905	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	95946606	95955975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280
transcript_5363.nic	chr1	+	835	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	-10	-3094	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTGTGTGTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	152969215	152991816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
transcript_53633.known	chr16	-	806	8	FSM	ENSMUSG00000022938.9	ENSMUST00000231414.2	806	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	10.770329614269	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313730	97272289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313657
transcript_5364.nic	chr1	+	2128	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	-65	-1856	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCCATCTGCTCCCGGGT	NA	False	NA	NA	False	AATAGA	-12	NA	152969160	152993054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
transcript_53642.known	chr16	-	3591	8	FSM	ENSMUSG00000005251.16	ENSMUST00000019386.10	3591	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	9.512612465478	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGCAGACTATTATTTCTT	NA	False	NA	2	True	AATAAA	-22	NA	97564987	97543132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_97545445_97547059_97547325_97548492_97548597_97549222_97549382_97551292_97551343_97552693_97552843_97556267_97556560_97564727
transcript_53643.nic	chr16	-	6184	24	NIC	ENSMUSG00000014039.19	novel	6194	24	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_15	8.7757183474732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGGCCCTCTGCTCTCC	6482	False	NA	0	True	AATAAA	-25	NA	97653051	97592719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618063_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652968
transcript_5365.nic	chr1	+	2895	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	-65	-1089	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTACTGCTGCCTGCCA	NA	False	NA	11	True	AATAAA	-23	NA	152969160	152993821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
transcript_53651.known	chr16	-	6194	24	FSM	ENSMUSG00000014039.19	ENSMUST00000121584.8	6194	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	11.3557360404684	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGGCCCTCTGCTCTCC	6483	False	NA	0	True	AATAAA	-25	NA	97653050	97592719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618048_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652972
transcript_53654.known	chr16	-	6556	14	FSM	ENSMUSG00000045975.9	ENSMUST00000170757.3	6556	14	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_10	14.8455559863677	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTCCGAGTGCCGTGC	NA	False	NA	2	True	AATAAA	-27	NA	97723833	97656408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_97660777_97669791_97670117_97671352_97671481_97676328_97676443_97677419_97677595_97678307_97678433_97680809_97680875_97682788_97682895_97684472_97684597_97687287_97687411_97691213_97691319_97693389_97693510_97713805_97713905_97723254
transcript_53658.nic	chr16	-	1392	7	ISM	ENSMUSG00000045975.9	ENSMUST00000170757.3	6556	14	-10	26254	-10	0	5prime_fragment	FALSE	canonical	3	55	junction_3	16.6799946709291	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGTCCTGAGTTTCTGA	NA	False	NA	NA	False	ATTAAA	-12	NA	97723843	97682662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr16_-_97682895_97684472_97684597_97687287_97687411_97691213_97691319_97693389_97693510_97713805_97713905_97723254
transcript_5366.nic	chr1	+	3970	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	-65	-14	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCATTTCACAGTGAAATA	NA	False	NA	-98	True	AATAAA	-21	NA	152969160	152994896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
transcript_53662.known	chr16	-	3072	4	FSM	ENSMUSG00000046962.17	ENSMUST00000052089.9	3072	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	18.4451137763426	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTTGGGATGAATTAAT	NA	False	NA	-1	True	AATAAA	-27	NA	97763809	97750960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_97752070_97752669_97754294_97757957_97758101_97763613
transcript_53666.nic	chr16	-	2949	3	NIC	ENSMUSG00000046962.17	novel	1452	3	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	4.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTTGGGATGAATT	NA	False	NA	-4	True	AATAAA	-24	NA	97763832	97750963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_97752070_97752669_97754294_97763613
transcript_53667.nnic	chr16	-	2864	3	NIC	ENSMUSG00000046962.17	novel	1452	3	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	8	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTTGGGATGAATT	NA	False	NA	-4	True	AATAAA	-24	NA	97763846	97750963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_97752070_97752669_97754294_97763712
transcript_53669.known	chr16	-	889	3	FSM	ENSMUSG00000046962.17	ENSMUST00000231263.2	889	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	40	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATCAGTAAGCCACATGT	NA	False	NA	NA	False	NA	NA	NA	97763801	97753729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_97754294_97757957_97758095_97763613
transcript_5367.nic	chr1	+	4081	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGAGTCTTGTGTCTTTGT	NA	False	NA	13	True	AATAAA	-14	NA	152969160	152995007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
transcript_53670.known	chr16	-	397	3	FSM	ENSMUSG00000046962.17	ENSMUST00000231560.2	397	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	37	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACGTCTTGGCTGCCAG	NA	False	NA	NA	False	NA	NA	NA	97763822	97754149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_97754294_97757957_97758101_97763712
transcript_53671.known	chr16	-	5463	2	FSM	ENSMUSG00000046962.17	ENSMUST00000063605.15	5463	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGCAGTTGTGGTTTTT	NA	False	NA	0	True	AATAAA	-21	NA	97763815	97749032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_97754294_97763613
transcript_53672.nnic	chr16	-	3464	2	NIC	ENSMUSG00000046962.17	novel	1452	3	NA	NA	-24	0	intron_retention	FALSE	canonical	3	25	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTTGGGATGAATT	NA	False	NA	-4	True	AATAAA	-24	NA	97763846	97750963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr16_-_97754294_97763712
transcript_53674.known	chr16	+	669	6	FSM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.8409283943557	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTCCTCTGATGGTGAA	NA	False	NA	NA	False	NA	NA	NA	97798533	97817315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97811369_97816865_97816920_97817041
transcript_53675.known	chr16	+	1230	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231913.2	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	45.9292934846597	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	14	True	NA	NA	NA	97798563	97817956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97817041
transcript_53676.known	chr16	+	546	5	FSM	ENSMUSG00000080717.11	ENSMUST00000232387.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	48.9508682251909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACTGTCTTAGCTACAT	NA	False	NA	NA	False	NA	NA	NA	97798526	97832636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97832442
transcript_53677.known	chr16	-	654	6	FSM	ENSMUSG00000116673.2	ENSMUST00000232533.2	654	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	28.4112653713276	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCCACAAATATTCTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	97883167	97821829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr16_-_97822043_97822147_97822201_97867743_97867866_97868954_97869016_97869203_97869331_97883089
transcript_53678.nnic	chr17	-	1390	5	NNC	ENSMUSG00000116995.2	novel	1210	4	NA	NA	-73	15	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	1.11803398874989	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATCCGGCCCTATCA	NA	False	NA	NA	False	TTTAAA	-13	NA	3165143	3162049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_3162848_3162936_3163029_3163562_3163623_3164462_3164621_3164861
transcript_53680.known	chr17	-	1210	4	FSM	ENSMUSG00000116995.2	ENSMUST00000232087.2	1210	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.62466929133727	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGCAC	NA	False	NA	NA	False	NA	NA	NA	3165070	3162064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_3162848_3163562_3163623_3164462_3164621_3164861
transcript_53691.nnic	chr17	+	4867	22	NIC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	-5	59441	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	40.3432550904425	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTGTGGCTTCAGCC	9434	False	NA	101	True	NA	NA	NA	3165241	3308575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_3165694_3172327_3172390_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034_3248499_3308012
transcript_53699.nnic	chr17	+	4927	22	NIC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	-59	59427	combination_of_known_splicesites	FALSE	canonical	0	0	junction_20	47.5323496477772	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGCCTGG	9380	False	NA	87	True	NA	NA	NA	3165187	3308561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034_3248499_3281509_3281592_3308012
transcript_5370.nnic	chr1	+	4114	5	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	98.9709553353912	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGAGTCTTGTGTCTTTGT	NA	False	NA	13	True	AATAAA	-14	NA	152969184	152995007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_152969358_152969782_152969860_152987887_152987990_152988125_152988194_152991313
transcript_53702.nic	chr17	+	4995	21	NIC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	-60	0	combination_of_known_junctions	TRUE	canonical	3	36	junction_1	37.9476942646059	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTCTAGGAATTGTAT	9379	False	NA	11	True	AATAAA	-18	NA	3165186	3249134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_3165694_3172327_3172390_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
transcript_53706.nnic	chr17	+	4859	21	NIC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	-59	59441	combination_of_known_splicesites	FALSE	canonical	3	64	junction_20	27.9703414351702	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTGTGGCTTCAGCC	9380	False	NA	101	True	NA	NA	NA	3165187	3308575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034_3248499_3308012
transcript_53707.nnic	chr17	+	4956	21	NIC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	-59	59538	combination_of_known_splicesites	FALSE	canonical	3	64	junction_20	27.9703414351702	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGTAATGCATCTTTG	9380	False	NA	NA	False	TTTAAA	-13	NA	3165187	3308672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034_3248499_3308012
transcript_53709.known	chr17	+	4866	20	FSM	ENSMUSG00000046201.10	ENSMUST00000076734.8	4866	20	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	21.7366509485669	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTCTAGGAATTGTAT	9446	False	NA	11	True	AATAAA	-18	NA	3165253	3249134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
transcript_53713.known	chr17	+	1511	4	FSM	ENSMUSG00000046201.10	ENSMUST00000232079.2	1511	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	66.8181612038723	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATTATCTAAGAGTA	9439	False	NA	NA	False	AATAAA	-12	NA	3165246	3201994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_3165694_3195349_3195434_3198810_3198856_3201059
transcript_53716.known	chr17	-	1402	7	FSM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	6.8414585839246	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACCTAACAGCTCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	3608056	3569530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607855
transcript_53719.known	chr17	+	11325	20	FSM	ENSMUSG00000069729.15	ENSMUST00000115797.9	11325	20	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	8.75742660692188	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCGAAGGCCAAATGGGCC	NA	False	NA	NA	False	AATAAA	-16	NA	5045348	5397931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_5046768_5090854_5091050_5147848_5148008_5177188_5177300_5293102_5293347_5314306_5314397_5329477_5329658_5341230_5341559_5356023_5356170_5362109_5362220_5364148_5364308_5368915_5369126_5371547_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
transcript_53723.known	chr17	-	948	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGGGGCGTGTGTGTCTG	3468	False	NA	-8	True	NA	NA	NA	5490518	5461144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
transcript_53726.known	chr17	-	780	3	FSM	ENSMUSG00000004945.16	ENSMUST00000185896.2	780	3	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_2	16.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGACTGGTTTCTTTGTCT	3455	False	NA	NA	False	ACTAAA	-15	NA	5490531	5483299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_5483855_5489806_5489908_5490407
transcript_53728.known	chr17	-	1445	1	FSM	ENSMUSG00000101959.2	ENSMUST00000189788.2	1445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGGTTTTTGCCTGTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	5469042	5467597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_5467600_5469000
transcript_53729.known	chr17	-	822	4	FSM	ENSMUSG00000004945.16	ENSMUST00000188282.7	822	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	325.783500025537	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGGAGTGTTGGATGTG	3452	False	NA	NA	False	AATAAA	-13	NA	5490534	5482569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_5483026_5483716_5483855_5489806_5489908_5490407
transcript_53739.known	chr17	+	3331	18	FSM	ENSMUSG00000002365.11	ENSMUST00000002436.11	3331	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_6	26.0644662593364	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGCAGATTCCCAAAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	5891603	5982229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_5891822_5937271_5937359_5940349_5940425_5942048_5942175_5949601_5949771_5952638_5952790_5955163_5955249_5958628_5958755_5958856_5958975_5968654_5968786_5970345_5970450_5970844_5970949_5972404_5972483_5974879_5974957_5976346_5976437_5977480_5977596_5978479_5978572_5980844
transcript_53753.known	chr17	-	4007	17	FSM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	12.4296457612436	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGACAGCAAGGATGAAGT	2593	False	NA	NA	False	ACTAAA	-45	NA	6130016	6092470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
transcript_53757.known	chr17	-	2033	16	FSM	ENSMUSG00000015659.13	ENSMUST00000024570.6	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_12	20.0614611188274	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTCCATCTGTTGTTA	2607	False	NA	-19	True	AATATA	-15	NA	6130002	6094340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6121027_6121165_6122108_6122146_6124430_6124523_6129893
transcript_53762.nnic	chr17	-	2023	16	NIC	ENSMUSG00000015659.13	novel	4007	17	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_8	22.4376667434225	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTCCATCTGTTGTTA	2593	False	NA	-19	True	AATATA	-15	NA	6130016	6094340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
transcript_53772.known	chr17	+	2245	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_1	74.5	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGTGGAGAGAGCAAGTG	1690	False	NA	NA	False	ATTAAA	-24	NA	6130060	6136792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6130187_6131076_6131150_6134746
transcript_53774.known	chr17	+	1613	2	FSM	ENSMUSG00000034345.15	ENSMUST00000146035.2	1613	2	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAACTGACTATATACC	1741	False	NA	NA	False	AATAAA	-10	NA	6130111	6132614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6130187_6131076
transcript_53775.known	chr17	+	1718	2	FSM	ENSMUSG00000034377.11	ENSMUST00000152672.2	1718	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACTAAAGGAGAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	6157132	6189064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6157272_6187485
transcript_53784.known	chr17	+	4499	17	FSM	ENSMUSG00000038141.12	ENSMUST00000232383.2	4499	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_14	255.117367291508	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6307134	6358589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
transcript_5379.known	chr1	+	539	3	FSM	ENSMUSG00000042751.15	ENSMUST00000190960.2	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	72	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGGAAAGAGGCAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	152969225	152970343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_152969301_152969782_152969860_152969956
transcript_53793.known	chr17	+	4405	17	FSM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	216.5692369082	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320744	6358589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
transcript_53797.nnic	chr17	+	1813	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	237.645407790157	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320708	6358589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6358271
transcript_53807.nic	chr17	+	5157	16	ISM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	-34	7	-34	-7	intron_retention	FALSE	canonical	0	0	junction_14	220.750195671236	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGTATGAGACTTTTT	NA	False	NA	31	True	AATAAA	-40	NA	6320710	6358582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851
transcript_53820.known	chr17	-	3321	5	FSM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	0	0	0	0	multi-exon	TRUE	canonical	3	2579	junction_4	2048.76394138027	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6367775	6358268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
transcript_53825.nic	chr17	-	857	2	ISM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	59	6176	-23	-6176	5prime_fragment	FALSE	canonical	3	2579	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAATGTCTTACAACTA	NA	False	NA	NA	False	NA	NA	NA	6367716	6364444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_6365234_6367648
transcript_5383.known	chr1	-	5164	24	FSM	ENSMUSG00000026479.14	ENSMUST00000027753.13	5164	24	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_23	24.3679264856456	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTTTCTGATTTTATT	NA	False	NA	-1	True	AATAAA	-19	NA	153062193	152998501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007568_153007714_153009344_153009495_153010522_153010603_153012443_153012650_153012936_153013100_153015471_153015618_153017271_153017518_153019471_153019655_153020259_153020479_153021384_153021498_153024673_153024864_153026489_153026613_153027782_153027920_153030137_153030237_153034597_153034734_153041864_153042054_153061654_153061848_153061999
transcript_53833.known	chr17	+	771	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	3024	junction_1	2440.4692555941	3712	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697510	6703695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
transcript_53846.nnic	chr17	-	1984	17	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10157	125	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	309.373535350068	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	2311	False	NA	NA	False	AATAAA	-35	NA	6744578	6708457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716279_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_53849.nnic	chr17	-	2018	17	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10157	125	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	290.843486421391	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	2311	False	NA	NA	False	AATAAA	-35	NA	6744578	6708457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_53850.nnic	chr17	-	2013	17	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-23389	125	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	313.58030769645	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	NA	False	NA	NA	False	AATAAA	-35	NA	6757810	6708457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6757652
transcript_5386.known	chr1	-	4916	23	FSM	ENSMUSG00000026479.14	ENSMUST00000185356.7	4916	23	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_14	15.8534090501821	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTTTCTGATTTTATT	NA	False	NA	-1	True	AATAAA	-19	NA	153061793	152998501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007568_153007714_153009344_153009495_153010522_153010603_153012443_153012650_153012936_153013100_153015471_153015618_153017271_153017518_153019471_153019655_153020259_153020479_153021384_153021498_153024673_153024864_153026489_153026613_153027782_153027920_153030137_153030237_153034597_153034734_153041864_153042054_153061654
transcript_53862.nnic	chr17	-	677	6	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10157	-15128	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_1	242.285286387762	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2311	False	NA	NA	False	NA	NA	NA	6744578	6723928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_6724073_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_53864.nnic	chr17	-	1127	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10157	-15011	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACGTGCGTGTTTCTTTT	2311	False	NA	NA	False	AATAAA	-11	NA	6744578	6723811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_53867.nnic	chr17	-	1010	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10157	-15128	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2311	False	NA	NA	False	NA	NA	NA	6744578	6723928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_53868.nnic	chr17	-	1068	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-23452	-15128	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_4	288.250758888854	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	6757873	6723928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6757652
transcript_53875.nnic	chr17	+	980	7	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-27	346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4243.08535541454	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGTTTTTGTGTTCCTT	NA	False	NA	NA	False	AATAAA	-11	NA	6869163	6875294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6873123_6873344_6874010_6874135_6874472_6874551_6874899
transcript_53877.nnic	chr17	+	760	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-27	346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4229.55933402051	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGTTTTTGTGTTCCTT	NA	False	NA	NA	False	AATAAA	-11	NA	6869163	6875294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6874010_6874135_6874472_6874551_6874899
transcript_53881.nnic	chr17	+	931	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-27	346	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	4194.75856754593	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGTTTTTGTGTTCCTT	NA	False	NA	NA	False	AATAAA	-11	NA	6869163	6875294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_6869236_6870885_6870928_6873123_6873344_6874010_6874135_6874472_6874551_6874899
transcript_53883.known	chr17	+	2589	5	FSM	ENSMUSG00000000579.15	ENSMUST00000092966.5	2589	5	0	0	0	0	multi-exon	TRUE	canonical	3	5304	junction_1	1714.27572169707	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	6869069	6877078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899
transcript_53886.known	chr17	+	675	4	FSM	ENSMUSG00000000579.15	ENSMUST00000124894.2	675	4	0	0	0	0	multi-exon	FALSE	canonical	3	5304	junction_1	1851.44670160631	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTCGGACTGTCCATCT	NA	False	NA	NA	False	NA	NA	NA	6869202	6874948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472
transcript_53890.nnic	chr17	+	665	4	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-23	346	combination_of_known_splicesites	FALSE	canonical	3	155	junction_1	4390.69017606825	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGTTTTTGTGTTCCTT	NA	False	NA	NA	False	AATAAA	-11	NA	6869167	6875294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_6869236_6874010_6874135_6874472_6874551_6874899
transcript_53891.known	chr17	+	3250	3	FSM	ENSMUSG00000000579.15	ENSMUST00000138598.8	3250	3	0	0	0	0	multi-exon	FALSE	canonical	3	5304	junction_1	1594.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGGTGTGTGTCAAACAC	NA	False	NA	NA	False	NA	NA	NA	6869190	6877173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6869236_6870885_6870928_6874010
transcript_53892.known	chr17	+	493	2	FSM	ENSMUSG00000000579.15	ENSMUST00000149027.8	493	2	0	0	0	0	multi-exon	FALSE	canonical	3	5304	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAACAACCACATGGTGG	NA	False	NA	NA	False	NA	NA	NA	6869190	6871333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_6869236_6870885
transcript_5390.nnic	chr1	-	2341	7	NNC	ENSMUSG00000026479.14	novel	4916	23	NA	NA	-4598	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	44.5570794973519	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTTTCTGATTTTATT	NA	False	NA	-1	True	AATAAA	-19	NA	153007578	152998501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007489
transcript_53903.known	chr17	-	771	5	FSM	ENSMUSG00000095677.3	ENSMUST00000179554.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	5415	junction_4	1216.82506959711	2901	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6923299	6916336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_6916737_6917085_6917164_6917501_6917626_6920709_6920752_6923172
transcript_5392.known	chr1	-	7622	28	FSM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	0	0	0	0	multi-exon	TRUE	canonical	3	518	junction_2	111.881330429904	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTGTGGCCTAAATG	NA	False	NA	-1	True	AATAAA	-24	NA	153208532	153094667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_153097476_153099404_153099505_153102129_153102289_153103256_153103457_153104480_153104596_153104787_153104938_153106467_153106613_153107479_153107618_153109230_153109311_153110193_153110400_153115000_153115158_153116062_153116242_153117622_153117766_153118374_153118529_153118976_153119223_153122683_153122873_153122982_153123205_153124785_153124899_153125310_153125501_153125590_153125714_153126132_153126270_153126357_153126457_153126822_153126941_153127697_153127887_153130934_153131102_153133821_153133953_153138135_153138441_153207873
transcript_53935.known	chr17	-	3164	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	1510	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGAGCGTTTATTGAGA	NA	False	NA	1	True	AATAAA	-20	NA	7050183	7005439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
transcript_5397.nic	chr1	-	4324	22	ISM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	-234	11800	-234	-1907	5prime_fragment	FALSE	canonical	3	652	junction_5	74.3336231347879	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGCAGAGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	153208766	153106467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_153106613_153107479_153107618_153109230_153109311_153110193_153110400_153115000_153115158_153116062_153116242_153117622_153117766_153118374_153118529_153118976_153119223_153122683_153122873_153122982_153123205_153124785_153124899_153125310_153125501_153125590_153125714_153126132_153126270_153126357_153126457_153126822_153126941_153127697_153127887_153130934_153131102_153133821_153133953_153138135_153138441_153207873
transcript_53995.known	chr17	-	1614	8	FSM	ENSMUSG00000023806.11	ENSMUST00000024572.10	1614	8	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	24.1119836409624	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATCGTTCAAGGGCCATG	NA	False	NA	NA	False	NA	NA	NA	7215755	7172114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7177711_7178676_7178823_7181355_7181498_7209067_7209156_7215376
transcript_53996.known	chr17	-	1263	3	FSM	ENSMUSG00000023806.11	ENSMUST00000232602.2	1263	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	43.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACAAGCTCAGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	7215680	7188267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_7189139_7209067_7209156_7215376
transcript_53997.known	chr17	-	2312	4	FSM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	227.371941980535	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACACACTGTTCCATTCA	NA	False	NA	-19	True	AATAAA	-19	NA	7228555	7222409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_7224424_7225052_7225168_7228135_7228190_7228426
transcript_54.known	ERCC-00160	+	727	1	FSM	ERCC-00160A	DQ883658	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00160_+_0_700
transcript_54002.nic	chr17	-	2537	3	ISM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	-44	56	-44	-56	intron_retention	FALSE	canonical	3	411	junction_2	60	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTTGCCGATGTTATA	NA	False	NA	-75	True	AATAAA	-24	NA	7228599	7222465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_7224424_7225052_7225168_7228135
transcript_54006.nnic	chr17	+	1208	10	NNC	ENSMUSG00000094724.9	novel	2448	10	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	330.475228335211	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	NA	False	AAAAAG	-11	NA	7246301	7265589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_7246498_7248506_7248568_7251537_7251591_7252454_7252513_7256120_7256192_7259079_7259194_7260468_7260710_7262027_7262074_7263832_7263908_7265296
transcript_54009.known	chr17	+	1783	9	FSM	ENSMUSG00000094724.9	ENSMUST00000089119.13	1783	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	237.179784130098	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCTGGCTAGTGCGCAG	NA	False	NA	NA	False	AATAAA	-17	NA	7245993	7266097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_7246498_7248506_7248568_7251537_7251591_7252454_7252513_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
transcript_54020.known	chr17	+	5406	21	FSM	ENSMUSG00000023809.11	ENSMUST00000024575.8	5406	21	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_19	15.0827716285834	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTCTGGGATAATGAG	NA	False	NA	NA	False	AATAAA	-22	NA	7437513	7570714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_7437843_7495311_7495429_7503444_7503527_7514100_7514182_7516690_7516771_7518938_7519046_7521810_7521849_7523229_7523373_7528402_7528474_7529526_7529616_7538990_7539056_7544861_7544965_7549167_7549299_7550142_7550269_7556313_7556404_7558028_7558188_7560144_7560307_7562601_7562679_7563413_7563532_7566681_7566820_7567614
transcript_54026.nic	chr17	+	2318	19	ISM	ENSMUSG00000023809.11	ENSMUST00000024575.8	5406	21	-34	7067	-34	-7067	5prime_fragment	FALSE	canonical	3	158	junction_15	13.1946491212195	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTGAGTGACTCCTGC	NA	False	NA	NA	False	TATAAA	-14	NA	7437479	7563647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_7437843_7495311_7495429_7503444_7503527_7514100_7514182_7516690_7516771_7518938_7519046_7521810_7521849_7523229_7523373_7528402_7528474_7529526_7529616_7538990_7539056_7544861_7544965_7549167_7549299_7550142_7550269_7556313_7556404_7558028_7558188_7560144_7560307_7562601_7562679_7563413
transcript_54027.nic	chr17	+	2418	17	ISM	ENSMUSG00000023809.11	ENSMUST00000024575.8	5406	21	-34	9997	-34	7282	5prime_fragment	FALSE	canonical	3	158	junction_15	12.7174830450054	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTGTGAAAGAGTCATTC	NA	False	NA	NA	False	NA	NA	NA	7437479	7560717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_7437843_7495311_7495429_7503444_7503527_7514100_7514182_7516690_7516771_7518938_7519046_7521810_7521849_7523229_7523373_7528402_7528474_7529526_7529616_7538990_7539056_7544861_7544965_7549167_7549299_7550142_7550269_7556313_7556404_7558028_7558188_7560144
transcript_54033.nic	chr17	+	1603	10	ISM	ENSMUSG00000023809.11	ENSMUST00000024575.8	5406	21	-34	40667	-34	9	5prime_fragment	FALSE	canonical	3	167	junction_7	9.98888270918113	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCCGCTTTTGCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	7437479	7530047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_7437843_7495311_7495429_7503444_7503527_7514100_7514182_7516690_7516771_7518938_7519046_7521810_7521849_7523229_7523373_7528402_7528474_7529526
transcript_54038.known	chr17	-	2649	10	FSM	ENSMUSG00000056133.6	ENSMUST00000070059.5	2649	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.35412613473634	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACGTCTTGCCCAAATAT	NA	False	NA	NA	False	AATAAA	-21	NA	7652863	7630213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_7631457_7637075_7637208_7637754_7637891_7639195_7639414_7641821_7641948_7643808_7644039_7644334_7644517_7646602_7646748_7646972_7647027_7652680
transcript_54040.known	chr17	+	621	3	FSM	ENSMUSG00000073471.4	ENSMUST00000231845.2	621	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	33	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGACTGTGTGTTGTTT	NA	False	NA	NA	False	TTTAAA	-16	NA	8164826	8173648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8165136_8171380_8171469_8173424
transcript_54041.nnic	chr17	-	1103	10	NNC	ENSMUSG00000095687.3	novel	1793	9	NA	NA	-96	-518	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	333.963441482617	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	-4	True	AAAAAG	-11	NA	8366713	8347425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_8347719_8349056_8349132_8349468_8349513_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
transcript_54045.known	chr17	-	1793	9	FSM	ENSMUSG00000095687.3	ENSMUST00000097420.7	1793	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	240.913852600883	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCTGGCTAGTGCGCAG	NA	False	NA	NA	False	AATGAA	-17	NA	8366929	8346907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
transcript_54055.known	chr17	+	3505	13	FSM	ENSMUSG00000069135.12	ENSMUST00000097419.10	3505	13	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_7	116.477107908235	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTTATCCTTGTGTT	NA	False	NA	NA	False	AGTAAA	-33	NA	8384332	8415636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8394350_8394411_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
transcript_5406.nic	chr1	-	2811	11	ISM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	-157	29695	-157	0	5prime_fragment	FALSE	canonical	3	696	junction_9	48.7156032498829	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTTCAAGAACTTACTA	NA	False	NA	NA	False	AATAAA	-12	NA	153208689	153124362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_153124899_153125310_153125501_153125590_153125714_153126132_153126270_153126357_153126457_153126822_153126941_153127697_153127887_153130934_153131102_153133821_153133953_153138135_153138441_153207873
transcript_54060.known	chr17	+	3077	12	FSM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_6	38.250587420542	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTACAGTGTTGGTTTT	NA	False	NA	30	True	ATTAAA	-22	NA	8384371	8415307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
transcript_54072.known	chr17	+	1159	7	FSM	ENSMUSG00000069135.12	ENSMUST00000162586.2	1159	7	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	120.467146282019	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	8384351	8394913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8394350
transcript_54073.nic	chr17	+	3726	6	ISM	ENSMUSG00000069135.12	ENSMUST00000162586.2	1159	7	-35	-22	-16	22	intron_retention	FALSE	canonical	3	314	junction_3	43.942689949524	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACTAAGACTTGCCTGTG	NA	False	NA	NA	False	AATAAA	-26	NA	8384316	8394935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759
transcript_54074.nic	chr17	+	532	5	ISM	ENSMUSG00000069135.12	ENSMUST00000162586.2	1159	7	-35	5956	-16	-5956	5prime_fragment	FALSE	canonical	3	314	junction_3	36.8128713903167	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCGGCCAGTGTGGAAGT	NA	False	NA	NA	False	AAGAAA	-3	NA	8384316	8388957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837
transcript_54076.known	chr17	+	958	5	FSM	ENSMUSG00000023861.18	ENSMUST00000155364.8	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	460	junction_2	254.978920697378	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGTGTGACTATATAT	2121	False	NA	4	True	AATAAA	-18	NA	8502593	8516493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8502794_8512246_8512251_8515366_8515464_8515655_8515789_8515969
transcript_54077.known	chr17	+	555	5	FSM	ENSMUSG00000023861.18	ENSMUST00000124023.8	555	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	407.512576493045	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGACCATGCCAACATTAT	2211	False	NA	NA	False	AAAACA	-15	NA	8502683	8516103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8502794_8512246_8512328_8515366_8515464_8515655_8515789_8515969
transcript_54079.known	chr17	+	1049	8	FSM	ENSMUSG00000073468.13	ENSMUST00000154553.2	1049	8	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_5	48.6457414710199	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2923	False	NA	NA	False	AATAAA	-19	NA	8529933	8546274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
transcript_5408.nic	chr1	-	2101	2	ISM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	-151	42482	-151	-12787	5prime_fragment	FALSE	canonical	3	756	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAAGGTAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	153208683	153137149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_153138441_153207873
transcript_54081.known	chr17	+	2490	7	FSM	ENSMUSG00000073468.13	ENSMUST00000150728.8	2490	7	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_6	38.5947607267561	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2923	False	NA	NA	False	AATAAA	-19	NA	8529933	8546274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8542168_8543265_8543296_8545786
transcript_54084.known	chr17	+	810	6	FSM	ENSMUSG00000073468.13	ENSMUST00000145276.8	810	6	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	242.374586126516	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTCTGGATCAACTG	2990	False	NA	NA	False	AATAAA	-17	NA	8530000	8546272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8530118_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
transcript_54091.nic	chr17	+	2250	8	NIC	ENSMUSG00000062327.11	novel	2046	8	NA	NA	-201	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	9.95295054191449	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGATTATTCTCTA	NA	False	NA	10	True	AATAAA	-20	NA	8653053	8661328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657444_8657622_8658741_8658872_8660424
transcript_54092.known	chr17	+	2046	8	FSM	ENSMUSG00000062327.11	ENSMUST00000074667.9	2046	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.70634511957782	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGATTATTCTCTA	NA	False	NA	10	True	AATAAA	-20	NA	8653254	8661328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657447_8657622_8658741_8658872_8660424
transcript_54094.known	chr17	+	7769	22	FSM	ENSMUSG00000023868.18	ENSMUST00000089085.10	7769	22	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	1.87476377952662	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCAAGTTTGCTCTCGT	NA	False	NA	NA	False	AATACA	-18	NA	9020524	9205480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_9020978_9117692_9117822_9139335_9139365_9147923_9148045_9149341_9149392_9159972_9160114_9161703_9161860_9163201_9163253_9163767_9163827_9165627_9165680_9168181_9168325_9170328_9170422_9172568_9172756_9180691_9180835_9181719_9181804_9183396_9183548_9186250_9186407_9188359_9188533_9193554_9193667_9195967_9196049_9197736_9197826_9200364
transcript_54095.known	chr17	+	2471	14	FSM	ENSMUSG00000023868.18	ENSMUST00000115708.2	2471	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.18385685639668	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTTCCTCCAGCAAGC	NA	False	NA	NA	False	AATAAA	-11	NA	9164400	9201223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_9164549_9165627_9165680_9168181_9168325_9170328_9170422_9172568_9172756_9180691_9180835_9181719_9181804_9183396_9183548_9186250_9186407_9188359_9188533_9193554_9193667_9195967_9196049_9197736_9197826_9200364
transcript_54098.known	chr17	-	3223	1	FSM	ENSMUSG00000046173.4	ENSMUST00000057190.4	3223	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTGTGGTTCACTT	NA	False	NA	NA	False	AATAAA	-40	NA	9888646	9885423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_9885400_9888600
transcript_5410.known	chr1	-	1964	2	FSM	ENSMUSG00000073538.11	ENSMUST00000186785.7	1964	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAAAAAATATAA	NA	False	NA	NA	False	AATAAA	-5	NA	153283536	153280572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_153282348_153283347
transcript_54101.known	chr17	-	8547	8	FSM	ENSMUSG00000062078.16	ENSMUST00000233645.2	8547	8	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_1	100.591718732463	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGGAAAATGTTCACAAGT	NA	False	NA	-19	True	ATTAAA	-21	NA	10538309	10421529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_10428561_10432287_10432363_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
transcript_54103.nnic	chr17	+	2358	3	NNC	ENSMUSG00000023826.17	novel	3202	12	NA	NA	14545	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	0.5	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCAAAAGCGTGTTTGTA	NA	False	NA	NA	False	AATAAA	-21	NA	12263347	12282248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_12263767_12269512_12269631_12280427
transcript_54107.known	chr17	+	1915	9	FSM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_3	26.473748790075	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	NA	False	NA	28	True	ATTAAA	-19	NA	12338170	12438532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
transcript_54113.nic	chr17	+	575	2	ISM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	-4	67515	-4	12475	5prime_fragment	FALSE	canonical	3	227	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCCAGTGAGAGGTGCC	NA	False	NA	NA	False	NA	NA	NA	12338166	12371017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_12338303_12370578
transcript_54115.known	chr17	-	5441	27	FSM	ENSMUSG00000014426.10	ENSMUST00000089058.7	5441	27	0	0	0	0	multi-exon	FALSE	canonical	2	131	junction_25	36.3765644044325	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGCGTCTGTTACTGGCT	NA	False	NA	1	True	AATAAA	-23	NA	12537683	12446507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_12447008_12448403_12448584_12451298_12451406_12451800_12451924_12453937_12454098_12454785_12454903_12455867_12455939_12456925_12457118_12458265_12458347_12458856_12458958_12461536_12461693_12462386_12462484_12466189_12466257_12466939_12467019_12467790_12467925_12468383_12468546_12472968_12473119_12473883_12474151_12475477_12475562_12475648_12475749_12476800_12476918_12479337_12479496_12480130_12480278_12482792_12483036_12489749_12491108_12496807_12496999_12537384
transcript_54116.known	chr17	-	5237	26	FSM	ENSMUSG00000014426.10	ENSMUST00000233755.2	5237	26	0	0	0	0	multi-exon	FALSE	canonical	2	41	junction_10	48.1782357501808	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGCGTCTGTTACTGGCT	NA	False	NA	1	True	AATAAA	-23	NA	12537635	12446507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_12447008_12448403_12448584_12451298_12451406_12451800_12451924_12453937_12454098_12454785_12454903_12455867_12455939_12456925_12457118_12458265_12458347_12458856_12458958_12462386_12462484_12466189_12466257_12466939_12467019_12467790_12467925_12468383_12468546_12472968_12473119_12473883_12474151_12475477_12475562_12475648_12475749_12476800_12476918_12479337_12479496_12480130_12480278_12482792_12483036_12489749_12491108_12496807_12496999_12537384
transcript_54118.known	chr17	-	3813	2	FSM	ENSMUSG00000014426.10	ENSMUST00000233683.2	3813	2	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCTTCAGTGTCTT	NA	False	NA	NA	False	ATTAAA	-35	NA	12537683	12493484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_12496999_12537384
transcript_54119.known	chr17	-	8887	48	FSM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_32	38.5858675109275	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGTGACTCACCCCACC	5618	False	NA	0	True	AATAAA	-19	NA	12988551	12901292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960_12912169_12912889_12913052_12914172_12914323_12916211_12916431_12916972_12917230_12917411_12917532_12918066_12918194_12919228_12919420_12920106_12920244_12920819_12920918_12921083_12921215_12922247_12922464_12923158_12923247_12923519_12923696_12923783_12923928_12924574_12924740_12928265_12928462_12929523_12929629_12930905_12931008_12932847_12933028_12933759_12933929_12934264_12934381_12934759_12934935_12935455_12935604_12936159_12936298_12937538_12937683_12938699_12938838_12941014_12941180_12944201_12944306_12945076_12945243_12945557_12945721_12950294_12950401_12952683_12952814_12954853_12954987_12958173_12958273_12959168_12959294_12967530_12967671_12988286
transcript_5412.known	chr1	-	4561	28	FSM	ENSMUSG00000042699.12	ENSMUST00000186380.7	4561	28	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_24	37.4089841985242	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGTCATTGATGTTCT	NA	False	NA	-1	True	AATAAA	-18	NA	153363354	153331503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354725_153356877_153356996_153358487_153358629_153359485_153359619_153363278
transcript_54122.nic	chr17	-	4031	27	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	-63	20983	-63	-4862	5prime_fragment	FALSE	canonical	3	127	junction_11	17.2209793617412	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACCACAGGGATTCCAGAA	5555	False	NA	NA	False	AAGAAA	-1	NA	12988614	12922275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_12922464_12923158_12923247_12923519_12923696_12923783_12923928_12924574_12924740_12928265_12928462_12929523_12929629_12930905_12931008_12932847_12933028_12933759_12933929_12934264_12934381_12934759_12934935_12935455_12935604_12936159_12936298_12937538_12937683_12938699_12938838_12941014_12941180_12944201_12944306_12945076_12945243_12945557_12945721_12950294_12950401_12952683_12952814_12954853_12954987_12958173_12958273_12959168_12959294_12967530_12967671_12988286
transcript_54128.known	chr17	-	1666	19	FSM	ENSMUSG00000073460.6	ENSMUST00000233548.2	1666	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	42.6386264921351	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCCACCTCAGCTTCT	2920	False	NA	NA	False	NA	NA	NA	13128887	13107788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13107857_13108962_13109062_13109165_13109316_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116221_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
transcript_54133.known	chr17	-	2092	19	FSM	ENSMUSG00000073460.6	ENSMUST00000163394.3	2092	19	0	0	0	0	multi-exon	TRUE	canonical	3	109	junction_10	13.5984067694222	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTACATGGCCAGTGC	2690	False	NA	-8	True	GATAAA	-20	NA	13129117	13107615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
transcript_54143.nic	chr17	-	1241	3	ISM	ENSMUSG00000073460.6	ENSMUST00000232982.2	620	8	-207	8082	-100	-8082	5prime_fragment	FALSE	canonical	3	130	junction_1	2	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTTAGTGTCCTAAATAA	2820	False	NA	NA	False	NA	NA	NA	13128987	13127095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_13128014_13128348_13128407_13128722
transcript_54149.known	chr17	+	2446	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	0	0	0	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	3303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCCAAGTGCTGGAATT	NA	False	NA	20	True	NA	NA	NA	13135268	13143954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
transcript_5416.known	chr1	-	2346	19	FSM	ENSMUSG00000042699.12	ENSMUST00000188345.2	2346	19	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	20.3910080642558	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAGTTCCCAAAACTTG	NA	False	NA	NA	False	CATAAA	-29	NA	153363397	153340087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
transcript_54163.known	chr17	+	1902	11	FSM	ENSMUSG00000068039.14	ENSMUST00000089024.13	1902	11	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	1038.79458989735	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	-1	True	ATTAAA	-14	NA	13135215	13143443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
transcript_54179.known	chr17	-	1219	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	0	0	0	0	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13135232	13130235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
transcript_54188.known	chr17	+	614	3	FSM	ENSMUSG00000068039.14	ENSMUST00000143961.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	3521	junction_2	31.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCGTGAATTTGGAGCCT	NA	False	NA	NA	False	AATAAA	-25	NA	13135325	13137266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_13135517_13136684_13136771_13136929
transcript_54194.known	chr17	-	2250	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	2842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCTGGGAGGTATGCA	NA	False	NA	NA	False	AATAAA	-19	NA	13179634	13161776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
transcript_54196.known	chr17	-	1931	8	FSM	ENSMUSG00000023832.15	ENSMUST00000233792.2	1931	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	366.747758503507	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTTGTCAGTGAGTT	NA	False	NA	0	True	NA	NA	NA	13179607	13161924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13171138_13171257_13175105_13175288_13178881_13179017_13179495
transcript_54201.known	chr17	-	1800	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGCAGGGCCCCCAAAA	NA	False	NA	NA	False	NA	NA	NA	13179258	13162329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
transcript_54202.known	chr17	+	423	1	FSM	ENSMUSG00000089695.3	ENSMUST00000160654.3	423	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTTGTATTTGTAAAG	NA	False	NA	-34	True	NA	NA	NA	13181654	13182077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_13181700_13182100
transcript_54205.nnic	chr17	-	3644	8	NNC	ENSMUSG00000060475.14	novel	2051	8	NA	NA	-7	0	intron_retention	FALSE	canonical	3	65	junction_2	221.334265632001	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTTTTTTCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	13211153	13185685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_13186939_13188291_13188447_13192596_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
transcript_54206.nnic	chr17	-	2617	8	NNC	ENSMUSG00000060475.14	novel	2051	8	NA	NA	-7	0	intron_retention	FALSE	canonical	3	13	junction_2	233.876559103214	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTTTTTTCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	13211153	13185685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_13186939_13188291_13188447_13193623_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
transcript_54208.known	chr17	-	2051	8	FSM	ENSMUSG00000060475.14	ENSMUST00000007007.14	2051	8	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_3	195.055094257798	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTTTTTTCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	13211146	13185685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
transcript_54214.known	chr17	-	3187	6	FSM	ENSMUSG00000060475.14	ENSMUST00000159986.8	3187	6	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	176.193756983612	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGTGATTCCTTCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	13211079	13191571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
transcript_54215.known	chr17	-	446	6	FSM	ENSMUSG00000060475.14	ENSMUST00000233867.2	446	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	266.82773469038	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGGTAGACCCAGCAATC	NA	False	NA	NA	False	NA	NA	NA	13213056	13194303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13212949
transcript_54216.known	chr17	-	2060	8	FSM	ENSMUSG00000060475.14	ENSMUST00000159551.8	2060	8	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	218.990354833733	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTTTTTTCCTTTTG	NA	False	NA	-2	True	AATAAA	-18	NA	13211384	13185682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195
transcript_54225.known	chr17	+	5861	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	0	0	0	0	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTGAGTTTGAATACCTA	NA	False	NA	NA	False	NA	NA	NA	13226703	13239021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
transcript_54226.nnic	chr17	-	3083	10	NNC	ENSMUSG00000067049.9	novel	2643	10	NA	NA	-12180	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	3.99382239013587	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACGTCTTGCCCAAATAT	NA	False	NA	NA	False	AATAAA	-21	NA	13362877	13327503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_13328741_13334386_13334519_13335065_13335202_13336506_13336725_13339647_13339774_13341630_13341861_13342156_13342339_13344453_13344599_13344823_13344878_13362254
transcript_54228.known	chr17	-	2643	10	FSM	ENSMUSG00000067049.9	ENSMUST00000084966.6	2643	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	4.32335032407638	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACGTCTTGCCCAAATAT	NA	False	NA	NA	False	AATAAA	-21	NA	13350678	13327503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_13328741_13334386_13334519_13335065_13335202_13336506_13336725_13339647_13339774_13341630_13341861_13342156_13342339_13344453_13344599_13344823_13344878_13350495
transcript_54229.known	chr17	+	2463	3	FSM	ENSMUSG00000090211.4	ENSMUST00000160626.4	2463	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGCTTTCCTTTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	13721215	13731455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_13721317_13722461_13722565_13729196
transcript_54233.known	chr17	+	7338	33	FSM	ENSMUSG00000068036.17	ENSMUST00000170827.9	7338	33	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	100.331632715896	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTGTCCCTTGGTTG	NA	False	NA	26	True	ATTAAA	-15	NA	13980802	14126056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_13981041_14024200_14024397_14027541_14027655_14029193_14029358_14030671_14030833_14038382_14038541_14042527_14042640_14043552_14043721_14049190_14049286_14050131_14050395_14052629_14052700_14055499_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080243_14081987_14081990_14082036_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116349_14116485_14119206_14119490_14122791_14122877_14124115
transcript_54241.nic	chr17	+	679	4	ISM	ENSMUSG00000068036.17	ENSMUST00000156591.8	798	5	-27	1460	-25	-1460	5prime_fragment	FALSE	canonical	3	198	junction_2	69.8108555710038	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGGAGGCATTGAGACA	NA	False	NA	NA	False	NA	NA	NA	13980775	14029295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_13981041_14024200_14024397_14027538_14027655_14029193
transcript_54242.nic	chr17	+	676	4	ISM	ENSMUSG00000068036.17	ENSMUST00000139347.8	822	5	-25	1485	-25	-1460	5prime_fragment	FALSE	canonical	3	139	junction_3	92.0664011581979	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGGAGGCATTGAGACA	NA	False	NA	NA	False	NA	NA	NA	13980775	14029295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_13981041_14024200_14024397_14027538_14027655_14029196
transcript_54243.nic	chr17	+	676	4	ISM	ENSMUSG00000068036.17	ENSMUST00000137708.8	5153	31	-85	87290	-25	-1460	5prime_fragment	FALSE	canonical	3	188	junction_2	72.8331426389571	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGGAGGCATTGAGACA	NA	False	NA	NA	False	NA	NA	NA	13980775	14029295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_13981041_14024200_14024397_14027541_14027655_14029193
transcript_54244.nic	chr17	+	673	4	NIC	ENSMUSG00000068036.17	novel	822	5	NA	NA	-25	-1460	combination_of_known_junctions	FALSE	canonical	3	139	junction_3	93.3845097790135	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGGAGGCATTGAGACA	NA	False	NA	NA	False	NA	NA	NA	13980775	14029295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_13981041_14024200_14024397_14027541_14027655_14029196
transcript_54247.known	chr17	-	3250	4	FSM	ENSMUSG00000048826.8	ENSMUST00000053218.7	3250	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	0.816496580927726	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAATCTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	14424356	14415313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_14417574_14418078_14418355_14419407_14419541_14423775
transcript_54248.known	chr17	-	413	2	FSM	ENSMUSG00000046991.13	ENSMUST00000228221.2	413	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTCTCAGTTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	15163339	15159572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15159843_15163196
transcript_5425.nic	chr1	-	1928	16	ISM	ENSMUSG00000042699.12	ENSMUST00000188345.2	2346	19	0	1372	0	-1372	5prime_fragment	FALSE	canonical	3	83	junction_12	22.111434950169	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGATAAGGAGGATGATG	NA	False	NA	15	True	AAGAAA	-3	NA	153363397	153341459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
transcript_54250.known	chr17	-	1663	12	FSM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_1	72.874056420468	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGATGACCTTAAACATCA	NA	False	NA	-19	True	AATAAA	-16	NA	15181535	15165270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176330_15176995_15177127_15179680_15179788_15181372
transcript_54253.nic	chr17	-	4057	9	ISM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	-46	2729	-46	0	5prime_fragment	FALSE	canonical	3	797	junction_6	66.6966078597705	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTCTGTCATCTTTTG	NA	False	NA	-2	True	AATAAA	-20	NA	15181581	15167999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176330_15176995_15177127_15179680_15179788_15181372
transcript_54257.known	chr17	+	1466	2	FSM	ENSMUSG00000050088.10	ENSMUST00000174004.2	1466	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATGTTTAAGGTCATCG	NA	False	NA	8	True	AATAAA	-13	NA	15163530	15165248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15163582_15163833
transcript_54259.known	chr17	+	2523	2	FSM	ENSMUSG00000050088.10	ENSMUST00000164837.3	2523	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACTGGTGCTGTTACTT	NA	False	NA	7	True	AATAAA	-15	NA	15163491	15166196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15163582_15163763
transcript_54265.known	chr17	+	1844	12	FSM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	75.6540626145262	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGGCTCTGTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	15198729	15211167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
transcript_54287.known	chr17	+	854	7	FSM	ENSMUSG00000036552.20	ENSMUST00000226384.2	854	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	76.8803182442251	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTCCCCCCTTACTATGT	NA	False	NA	NA	False	NA	NA	NA	15261904	15268919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15261909_15262509_15262679_15263266_15263520_15264584_15264687_15265308_15265399_15267826_15267925_15268781
transcript_54292.known	chr17	-	752	4	FSM	ENSMUSG00000079710.11	ENSMUST00000179539.9	752	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	7.25718035235908	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATCCTTCAAAATAAATGA	8865	False	NA	NA	False	NA	NA	NA	15230444	15216077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15216212_15219403_15219560_15222241_15222449_15230189
transcript_54295.nnic	chr17	-	698	3	Antisense	novelGene_ENSMUSG00000116895.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	72	junction_1	19	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGTTCTTTGGAAGTTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	15244505	15233024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr17_-_15233378_15240017_15240222_15244364
transcript_54296.known	chr17	-	517	3	FSM	ENSMUSG00000079707.11	ENSMUST00000097398.12	517	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCCTCGTGTTACCTT	NA	False	NA	NA	False	AATAAA	-16	NA	15261701	15247413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15247580_15253608_15253816_15261557
transcript_54297.known	chr17	-	720	4	FSM	ENSMUSG00000079707.11	ENSMUST00000040746.8	720	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	6.37704215656966	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGAGCCTCGTGTTACC	NA	False	NA	NA	False	AATAAA	-14	NA	15261750	15247415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15247580_15250770_15250927_15253608_15253816_15261557
transcript_54298.known	chr17	+	788	6	FSM	ENSMUSG00000036552.20	ENSMUST00000226599.2	788	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	84.7216619289305	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCCTCTGAATGGAC	NA	False	NA	NA	False	ATTAAA	-20	NA	15261895	15266171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15265897
transcript_54300.nnic	chr17	-	1192	5	NNC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	14.4805904575746	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461045	15451842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_15452674_15453032_15453145_15454190_15454265_15460531_15460624_15460962
transcript_54301.known	chr17	-	1179	5	FSM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	9.14808723176599	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTCTCTTTTCTTTCT	NA	False	NA	-8	True	GATAAA	-12	NA	15461045	15451846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531_15460624_15460962
transcript_54305.known	chr17	-	3581	11	FSM	ENSMUSG00000014773.14	ENSMUST00000014917.8	3581	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	1.34536240470737	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGTGTGACTTTTTAG	NA	False	NA	NA	False	AATAAA	-16	NA	15596238	15587615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15588298_15588395_15588514_15588628_15589428_15590468_15590686_15590792_15590963_15591084_15591216_15591867_15591929_15593698_15593957_15594151_15594213_15594927_15595222_15595448
transcript_54307.known	chr17	+	4420	11	FSM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_2	12.6526677028997	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAAATAGGCCACTGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	15616463	15653700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15616823_15622006_15623392_15626016_15626198_15627858_15627961_15634940_15635114_15637894_15637988_15643139_15643347_15644531_15644641_15646450_15646538_15651838_15651891_15652028
transcript_54309.known	chr17	+	5787	11	FSM	ENSMUSG00000014763.9	ENSMUST00000231274.2	5787	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	14.1350627872677	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCACTTTTTTTTTCTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	15616509	15653845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15616823_15622006_15624660_15626016_15626198_15627858_15627961_15634940_15635114_15637894_15637988_15643139_15643347_15644531_15644641_15646450_15646538_15651838_15651891_15652028
transcript_54317.known	chr17	-	1758	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGGCTGCACTAGTTG	NA	False	NA	NA	False	NA	NA	NA	15718560	15695282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
transcript_54322.known	chr17	-	1970	5	FSM	ENSMUSG00000014769.11	ENSMUST00000231341.2	1970	5	0	0	0	0	multi-exon	FALSE	canonical	3	4315	junction_3	328.285698744249	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	-13	True	ATTAAA	-15	NA	15718601	15696220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
transcript_54324.known	chr17	+	1891	9	FSM	ENSMUSG00000014767.18	ENSMUST00000014911.12	1891	9	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_2	77.8728932299295	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720149	15737689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
transcript_54329.known	chr17	+	12794	8	FSM	ENSMUSG00000014767.18	ENSMUST00000162505.8	12794	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	66.6565978791022	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTTAGAATCTTTAGAAA	NA	False	NA	NA	False	NA	NA	NA	15720149	15748641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
transcript_5433.nic	chr1	-	559	4	ISM	ENSMUSG00000042699.12	ENSMUST00000189509.2	2658	5	-45	4297	-43	1235	5prime_fragment	FALSE	canonical	3	106	junction_2	10.7806410858642	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGTAAGGGACTTGAATA	NA	False	NA	NA	False	NA	NA	NA	153363449	153356881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_153356996_153358487_153358629_153359485_153359619_153363278
transcript_54332.nnic	chr17	-	1045	7	NNC	ENSMUSG00000014771.14	novel	1120	6	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	325.810101473577	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	False	NA	-14	True	NA	NA	NA	15747570	15741836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252_15747364_15747445
transcript_54338.known	chr17	-	1120	6	FSM	ENSMUSG00000014771.14	ENSMUST00000054450.7	1120	6	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_3	58.5409258553364	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	False	NA	-14	True	NA	NA	NA	15747563	15741836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252
transcript_5434.known	chr1	-	1604	2	FSM	ENSMUSG00000042699.12	ENSMUST00000189425.2	1604	2	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAATTTTCAAATTATGT	NA	False	NA	NA	False	AAGAAA	-21	NA	153363380	153358116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_153359619_153363278
transcript_54341.known	chr17	+	7916	36	FSM	ENSMUSG00000023852.15	ENSMUST00000024627.14	7916	36	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_29	37.9898375240279	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGGCTTGTCTGCTATG	NA	False	NA	NA	False	AATAAA	-23	NA	15925228	15992872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182_15975344_15977021_15977064_15977878_15978010_15978536_15978676_15978843_15978995_15980589_15980713_15981540_15981670_15982643_15982785_15985104_15985284_15986592_15986690_15987711_15987767_15988827_15989039_15990239
transcript_54343.nic	chr17	+	4798	31	ISM	ENSMUSG00000023852.15	ENSMUST00000024627.14	7916	36	-53	10084	-53	1191	5prime_fragment	FALSE	canonical	3	278	junction_29	37.4243087964078	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGCAGCTCCTGATTAC	NA	False	NA	NA	False	NA	NA	NA	15925175	15982788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182_15975344_15977021_15977064_15977878_15978010_15978536_15978676_15978843_15978995_15980589_15980713_15981540_15981670_15982643
transcript_54348.nic	chr17	+	4978	24	ISM	ENSMUSG00000023852.15	ENSMUST00000024627.14	7916	36	-40	16476	-40	786	5prime_fragment	FALSE	canonical	3	287	junction_10	32.2930227676305	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCTTCTATTGTTTTATT	NA	False	NA	NA	False	AATAAA	-20	NA	15925188	15976396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182
transcript_54350.nic	chr17	+	1427	8	ISM	ENSMUSG00000023852.15	ENSMUST00000173311.8	4211	23	-14	21065	-7	19	5prime_fragment	FALSE	canonical	3	308	junction_1	29.3048717827613	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCCAGGAGACATACAGTA	NA	False	NA	NA	False	AAGAAA	-5	NA	15925221	15952189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115
transcript_54351.nic	chr17	+	1805	8	ISM	ENSMUSG00000023852.15	ENSMUST00000173311.8	4211	23	-281	20954	-274	130	5prime_fragment	TRUE	canonical	3	308	junction_1	29.3048717827613	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGGATAATTATAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	15924954	15952300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951280_15952115
transcript_54354.nic	chr17	+	1166	6	ISM	ENSMUSG00000023852.15	ENSMUST00000173159.2	1372	8	-140	1276	-89	-1276	5prime_fragment	FALSE	canonical	3	308	junction_1	31.9211528613864	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTACAGTGTTTTGTGA	NA	False	NA	NA	False	AAAACA	-29	NA	15925139	15950894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744
transcript_54355.known	chr17	+	1372	8	FSM	ENSMUSG00000023852.15	ENSMUST00000173159.2	1372	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	130.495132444995	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGATTTGAAAGAAACAAAG	NA	False	NA	NA	False	NA	NA	NA	15925279	15952170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_15925575_15927201_15927402_15945530_15945733_15946510_15946625_15948448_15948514_15950744_15950895_15951010_15951302_15952115
transcript_54356.known	chr17	-	5698	3	FSM	ENSMUSG00000048027.10	ENSMUST00000170578.3	5698	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	3.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAGAAAGGAA	NA	False	NA	NA	False	ATTAAA	-27	NA	16046848	16023449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_16028064_16040931_16041441_16046273
transcript_54358.known	chr17	+	798	1	FSM	ENSMUSG00000116757.2	ENSMUST00000231695.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGTACACTAAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	16777507	16778305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_16777500_16778300
transcript_54359.known	chr17	+	2684	4	FSM	ENSMUSG00000095990.2	ENSMUST00000147630.2	2684	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	43.3615292883245	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720
transcript_5436.known	chr1	-	1735	12	FSM	ENSMUSG00000042684.9	ENSMUST00000041874.9	1735	12	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	13.2309429459759	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTATTGTCTTAATCTT	NA	False	NA	-16	True	AATAAA	-20	NA	153425791	153378760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_153379304_153384857_153384898_153388291_153388377_153390985_153391033_153391147_153391297_153394628_153394722_153400092_153400169_153403810_153403869_153411617_153411706_153413173_153413248_153421008_153421093_153425393
transcript_54367.known	chr17	+	3220	10	FSM	ENSMUSG00000116564.2	ENSMUST00000024620.8	3220	10	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_3	38.1895855495244	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTGGCTTTACTTCA	NA	False	NA	10	True	AATAAA	-15	NA	17594570	17615161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
transcript_54375.known	chr17	+	1596	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATTTGTCTTTTGAA	NA	False	NA	NA	False	AATGAA	-20	NA	17594833	17608016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
transcript_54378.known	chr17	-	12052	18	FSM	ENSMUSG00000023845.8	ENSMUST00000041047.4	12052	18	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	4.93557105021248	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTATGGATTCATCTGA	9893	False	NA	NA	False	AATAAA	-17	NA	17845309	17741671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_17750143_17750738_17750821_17751399_17751541_17757175_17757338_17758781_17758967_17765072_17765230_17766645_17766830_17773131_17773221_17773423_17773585_17783014_17783147_17786944_17787077_17788582_17788697_17791135_17791291_17791887_17792009_17794208_17794341_17795510_17795650_17798793_17799635_17844655
transcript_54379.known	chr17	+	2410	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	0	0	0	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTTAGTAATCGGAATGG	NA	False	NA	39	True	AATAAA	-24	NA	21165572	21186178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
transcript_54380.nnic	chr17	+	2362	15	NNC	ENSMUSG00000007564.16	novel	750	5	NA	NA	261	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	345.623696808998	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTTAGTAATCGGAATGG	NA	False	NA	39	True	AATAAA	-24	NA	21166009	21186178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_21166235_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
transcript_54382.known	chr17	+	3800	5	FSM	ENSMUSG00000067942.7	ENSMUST00000088811.7	3800	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	17.6405073623181	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTTCTTTTGTTTGT	NA	False	NA	13	True	AGTAAA	-24	NA	21229202	21249123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21229249_21231937_21232035_21240333_21240461_21240967_21241097_21245722
transcript_54383.known	chr17	+	2090	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232473.2	2090	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	23.6801604724292	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGGGGTTAAAATTGG	NA	False	NA	NA	False	AATAAA	-41	NA	21229164	21263332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21229249_21231937_21232040_21240333_21240461_21240967_21241097_21261684
transcript_54384.known	chr17	+	1041	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232354.2	1041	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	15.2807067899361	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAACCTCAAGCCTCAC	NA	False	NA	NA	False	NA	NA	NA	21229212	21246252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21245722
transcript_54385.known	chr17	+	552	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232663.2	552	5	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	19.0394327646598	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATCCAGCCAGGAACACC	NA	False	NA	NA	False	NA	NA	NA	21229305	21261818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21261684
transcript_54386.known	chr17	+	756	4	FSM	ENSMUSG00000067942.7	ENSMUST00000232595.2	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	13.5236418500672	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATATCCATTTATGTACAG	NA	False	NA	NA	False	NA	NA	NA	21229260	21241389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967
transcript_5439.known	chr1	+	2339	5	FSM	ENSMUSG00000026475.8	ENSMUST00000027748.8	2339	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAGGACAGTATGGAT	NA	False	NA	NA	False	AATAAA	-23	NA	153616094	153621214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_153616259_153616608_153616720_153617365_153617428_153617708_153617876_153619379
transcript_54390.known	chr17	+	2300	4	FSM	ENSMUSG00000023882.16	ENSMUST00000007884.15	2300	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	13.8884444373331	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCGTTTTGTTTTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	21643494	21655416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21643824_21647998_21648091_21650456_21650584_21653664
transcript_54391.known	chr17	+	2574	5	FSM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	22.3271135617661	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTCTCTCTCTCTGT	NA	False	NA	2	True	AATAAA	-18	NA	21670635	21685849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21670684_21672698_21672790_21676558_21676651_21681922_21682050_21683633
transcript_54395.nnic	chr17	+	831	5	NNC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	-44	-2216	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	24.0572234474388	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGGGTTGTCTGAACA	1431	False	NA	NA	False	AATAAA	-11	NA	21709215	21727810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21727601
transcript_54396.known	chr17	+	3065	5	FSM	ENSMUSG00000057409.8	ENSMUST00000233158.2	3065	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	50.8527285403645	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGGAAAATGTTTTAATT	1475	False	NA	NA	False	ATTAAA	-13	NA	21709259	21730735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21728248
transcript_54407.known	chr17	+	2652	6	FSM	ENSMUSG00000067931.7	ENSMUST00000088787.7	2652	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	15.6025638918737	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787269	21808961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
transcript_54409.nic	chr17	+	402	3	ISM	ENSMUSG00000067931.7	ENSMUST00000088787.7	2652	6	-14	14772	-14	-14772	5prime_fragment	FALSE	canonical	3	80	junction_2	12.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGATTCTCCAGTAAAC	NA	False	NA	NA	False	NA	NA	NA	21787255	21794189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_21787508_21789310_21789390_21794118
transcript_54413.nnic	chr17	+	2977	5	Genic_Genomic	ENSMUSG00000073448.4_ENSMUSG00000067929.4	novel	842	1	NA	NA	-10187	559	multi-exon	FALSE	canonical	3	30	junction_1	5.44862367942584	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTTTGTGAGCACCAT	NA	False	NA	9	True	AAAACA	-45	NA	21898900	21911580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr17_+_21899118_21900505_21900595_21904941_21905026_21906708_21906836_21909120
transcript_54417.known	chr17	+	4209	6	FSM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	11.689311356962	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGTGGAAATTCAATGAG	NA	False	NA	9	True	AATAAA	-24	NA	21926722	21944617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924_21940052_21940968
transcript_5442.known	chr1	+	2792	7	FSM	ENSMUSG00000026473.17	ENSMUST00000086199.12	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	27.7213315376845	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTATTTCATTCCTTCTT	NA	False	NA	87	True	NA	NA	NA	153775689	153785469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_153775806_153778679_153778859_153780282_153780445_153782094_153782242_153782765_153782894_153783031_153783232_153783609
transcript_54420.known	chr17	+	640	6	FSM	ENSMUSG00000061544.14	ENSMUST00000182827.8	640	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	15.5254629560603	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTGAATCTGAGATTGTC	NA	False	NA	NA	False	NA	NA	NA	21949775	21964042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027
transcript_54426.known	chr17	-	2735	5	FSM	ENSMUSG00000069743.6	ENSMUST00000232918.2	2735	5	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_3	16.8077363139716	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAAAAATATAGTGAATGT	NA	False	NA	NA	False	NA	NA	NA	22064753	22036848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_22039170_22040050_22040178_22042824_22042873_22059585_22059696_22064624
transcript_54427.known	chr17	-	2221	5	FSM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_1	2.29128784747792	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCTAAGAAAATACCTGGT	NA	False	NA	NA	False	NA	NA	NA	22128907	22098550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_22100076_22100938_22101066_22106291_22106340_22127029_22127178_22128534
transcript_54429.nic	chr17	-	817	4	ISM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	-4	2271	-4	-2271	5prime_fragment	FALSE	canonical	2	13	junction_3	1.24721912892465	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGTCTTCATTGCTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	22128911	22100821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_22101066_22106291_22106340_22127029_22127178_22128534
transcript_54432.known	chr17	-	3265	6	FSM	ENSMUSG00000071267.12	ENSMUST00000091879.12	3265	6	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_3	17.9041894538681	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181432	22145940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22173035_22181236
transcript_54439.known	chr17	-	2481	3	FSM	ENSMUSG00000071267.12	ENSMUST00000126485.2	2481	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	18	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22181445	22158725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_22160832_22172868_22173035_22181236
transcript_54441.known	chr17	+	2741	4	FSM	ENSMUSG00000053347.16	ENSMUST00000055349.15	2741	4	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_3	5.73488351136175	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGTTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181532	22213347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_22181801_22207011_22207083_22209759_22209887_22211072
transcript_54443.known	chr17	-	2872	5	FSM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	1.11803398874989	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGGCTGTTTCCATT	NA	False	NA	NA	False	NA	NA	NA	22385171	22363339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_22365516_22366369_22366497_22369015_22369064_22382167_22382317_22384799
transcript_54449.nnic	chr17	-	2782	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.1946965701747	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580398	22556969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577897_22578420_22578506_22580148
transcript_5445.known	chr1	+	4589	8	FSM	ENSMUSG00000026470.15	ENSMUST00000027743.13	4589	8	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_7	29.3257565972304	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGAGATTGGTCTGCTG	NA	False	NA	NA	False	TATAAA	-19	NA	155034460	155081405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155034674_155049731_155049902_155053599_155053695_155063523_155063587_155067174_155067301_155068964_155069072_155073086_155073182_155077685
transcript_54451.nnic	chr17	-	919	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-17	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.1946965701747	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580398	22558832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577897_22578420_22578506_22580148
transcript_54453.nnic	chr17	-	2728	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580398	22556969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
transcript_54454.known	chr17	-	2784	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580381	22556969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
transcript_54455.nnic	chr17	-	865	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-17	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580398	22558832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
transcript_5446.nnic	chr1	+	1392	8	NNC	ENSMUSG00000026470.15	novel	4589	8	NA	NA	-74	1	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_7	70.5112525395336	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGAGATTGGTCTGCTGT	NA	False	NA	NA	False	TATAAA	-20	NA	155034386	155081406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_155034674_155049731_155049902_155053599_155053695_155063523_155063587_155067174_155067301_155068964_155069072_155073086_155073182_155080957
transcript_54466.known	chr17	+	2926	7	FSM	ENSMUSG00000071266.14	ENSMUST00000120222.8	2926	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	20.6881608655772	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGGTTGTTTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	22643239	22675670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670077_22670134_22672432_22672560_22673404
transcript_5447.known	chr1	+	934	8	FSM	ENSMUSG00000026470.15	ENSMUST00000193059.6	934	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	72.5010907729346	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCAGTGGTGTGCCATAGC	NA	False	NA	NA	False	NA	NA	NA	155034464	155077690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155034674_155049731_155049902_155053599_155053695_155063523_155063587_155067174_155067301_155068964_155069136_155073086_155073182_155077685
transcript_54474.known	chr17	-	6618	6	FSM	ENSMUSG00000059142.17	ENSMUST00000160457.10	6618	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	13.6528385327008	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTTATGTTGTGCTTGC	NA	False	NA	NA	False	NA	NA	NA	23086108	23065670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23071741_23076223_23076351_23080479_23080536_23080705_23080827_23084220_23084311_23085954
transcript_54475.known	chr17	-	5683	5	FSM	ENSMUSG00000059142.17	ENSMUST00000088696.13	5683	5	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	9.36416040016402	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTTGCCTGTTTGATGA	NA	False	NA	NA	False	CATAAA	-35	NA	23086079	23066455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23071741_23076223_23076351_23080479_23080536_23084220_23084311_23085954
transcript_54481.nnic	chr17	-	2876	6	NNC	ENSMUSG00000071256.5	novel	2686	6	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	16.80476123008	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCTTTAGCTGGC	6697	False	NA	NA	False	AATAAA	-20	NA	23783199	23775740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_23777287_23778356_23778523_23778607_23778679_23778958_23779077_23780119_23780635_23782739
transcript_54483.known	chr17	-	2686	6	FSM	ENSMUSG00000071256.5	ENSMUST00000095606.5	2686	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	6.49923072370877	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCTTTAGCTGGC	6684	False	NA	NA	False	AATAAA	-20	NA	23783212	23775740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23777287_23778356_23778523_23778607_23778679_23778958_23779077_23780119_23780635_23782942
transcript_54502.nnic	chr17	-	2219	7	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	37.0929762743419	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTGCCCTTGGCTCTG	4819	False	NA	-8	True	ATTAAA	-13	NA	23805210	23794825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23803793_23803913_23804411_23804549_23804934
transcript_54505.known	chr17	-	2104	6	FSM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	5.98665181883831	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGGCTCTGTGTGCTTG	4823	False	NA	0	True	ATTAAA	-21	NA	23805206	23794817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
transcript_54508.nic	chr17	-	2499	6	NIC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-62	354	combination_of_known_junctions	TRUE	canonical	3	19	junction_3	27.6579102609	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAATAATAATAATAATAAT	9987	False	NA	NA	False	NA	NA	NA	23805268	23794463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800051_23800245_23804411_23804549_23804934
transcript_54510.nnic	chr17	-	2211	6	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-62	2	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	26.5736711803243	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCCCTTGGCTCTGTG	9987	False	NA	-6	True	ATTAAA	-15	NA	23805268	23794823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_23796137_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
transcript_54514.nnic	chr17	-	1893	6	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	377	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	32.2837420383697	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTGCCCTTGGCTCTG	NA	False	NA	-8	True	ATTAAA	-13	NA	23818084	23794825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23818015
transcript_54517.nic	chr17	-	2137	6	NIC	ENSMUSG00000062012.15	novel	2139	6	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	27.6579102609	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTGCCCTTGGCTCTG	9987	False	NA	-8	True	ATTAAA	-13	NA	23805268	23794825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800051_23800245_23804411_23804549_23804934
transcript_5452.known	chr1	+	405	3	FSM	ENSMUSG00000026470.15	ENSMUST00000191769.2	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_2	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGCTGTGTTGTCAGTG	NA	False	NA	NA	False	NA	NA	NA	155034544	155053705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155034674_155049731_155049902_155053599
transcript_54522.known	chr17	-	502	3	FSM	ENSMUSG00000062012.15	ENSMUST00000228298.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	39	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTGGTGTTATAACTAT	4879	False	NA	NA	False	NA	NA	NA	23805150	23803763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23803913_23804411_23804549_23804934
transcript_54527.known	chr17	+	2609	7	FSM	ENSMUSG00000023902.19	ENSMUST00000120967.8	2609	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_6	80.8484521943508	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	879	False	NA	35	True	AGTAAA	-19	NA	23819829	23829993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
transcript_5453.known	chr1	-	4873	10	FSM	ENSMUSG00000033722.10	ENSMUST00000186156.7	4873	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.14878662286819	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGGATTCTGTCTTCAC	8327	False	NA	NA	False	ATTAAA	-25	NA	155120190	155088216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_155089460_155093127_155093313_155094005_155094134_155097080_155097334_155099020_155099178_155100656_155102195_155108191_155108336_155116481_155116546_155117170_155118073_155119931
transcript_54533.known	chr17	+	2698	6	FSM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	55.9335319821661	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	879	False	NA	28	True	AGTAAA	-12	NA	23819829	23829986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
transcript_5454.known	chr1	-	7492	15	FSM	ENSMUSG00000026469.15	ENSMUST00000027741.12	7492	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	3.69569523436472	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGGCCTTTTTCATTAT	NA	False	NA	0	True	AAGAAA	-20	NA	155293075	155151446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_155156817_155158958_155159181_155165940_155166078_155168854_155169022_155183367_155183563_155184696_155184869_155188504_155188685_155188916_155189108_155200059_155200142_155204344_155204429_155206083_155206234_155207908_155208133_155221298_155221401_155260356_155260409_155292911
transcript_54540.nic	chr17	+	2474	5	NIC	ENSMUSG00000023902.19	novel	2698	6	NA	NA	-41	0	intron_retention	FALSE	canonical	3	18	junction_2	109.005733794145	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	838	False	NA	28	True	AGTAAA	-12	NA	23819788	23829986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240
transcript_54545.known	chr17	+	2368	4	FSM	ENSMUSG00000023902.19	ENSMUST00000115509.8	2368	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	114.030210422014	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	879	False	NA	28	True	AGTAAA	-12	NA	23819829	23829986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23819934_23824478_23824939_23827081_23827140_23828240
transcript_54548.known	chr17	-	4528	10	FSM	ENSMUSG00000023903.9	ENSMUST00000024696.9	4528	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.628539361054709	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAAAGTGTTCTTTATCT	NA	False	NA	NA	False	NA	NA	NA	23864251	23847284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23849811_23849979_23850238_23850316_23850470_23850764_23850848_23851522_23851608_23851707_23851885_23858726_23859017_23859112_23859249_23863012_23863146_23863564
transcript_54550.known	chr17	-	1450	14	FSM	ENSMUSG00000041319.15	ENSMUST00000095579.11	1450	14	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_13	93.5049281997111	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	754	False	NA	-21	True	AATAAA	-14	NA	23892856	23887591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892807
transcript_54551.known	chr17	-	1431	14	FSM	ENSMUSG00000041319.15	ENSMUST00000115490.9	1431	14	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_13	116.170706876108	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	765	False	NA	-22	True	AATAAA	-13	NA	23892845	23887592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
transcript_54554.known	chr17	-	1504	13	FSM	ENSMUSG00000041319.15	ENSMUST00000047436.11	1504	13	0	0	0	0	multi-exon	TRUE	canonical	3	423	junction_10	38.5186643070603	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	794	False	NA	-21	True	AATAAA	-14	NA	23892816	23887591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487
transcript_54561.known	chr17	+	1941	10	FSM	ENSMUSG00000043782.10	ENSMUST00000062967.10	1941	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAAAATTTTATTTTGAC	NA	False	NA	NA	False	AATAAA	-16	NA	23879479	23887595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23879527_23880741_23881037_23884361_23884578_23884714_23884832_23884915_23885063_23885722_23885921_23886033_23886184_23886522_23886654_23886862_23886984_23887076
transcript_54565.nnic	chr17	+	889	4	NNC	ENSMUSG00000023904.11	novel	693	4	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	146.645453011298	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892548	23894201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_23892865_23892942_23893043_23893520_23893650_23893857
transcript_54566.known	chr17	+	597	4	FSM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_1	165.748805928328	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAAGGGAAAATGTTACC	NA	False	NA	-42	True	NA	NA	NA	23892600	23894148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23892678_23892942_23893043_23893520_23893650_23893857
transcript_54569.nic	chr17	+	951	3	NIC	ENSMUSG00000023904.11	novel	946	3	NA	NA	-5	0	intron_retention	FALSE	canonical	3	343	junction_1	29	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892564	23894201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_23893043_23893520_23893650_23893857
transcript_54571.known	chr17	+	946	3	FSM	ENSMUSG00000023904.11	ENSMUST00000024697.5	946	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892581	23894201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23893043_23893508_23893650_23893857
transcript_54572.known	chr17	+	693	4	FSM	ENSMUSG00000023904.11	ENSMUST00000180140.8	693	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	183.637928786209	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892569	23894201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23892678_23892942_23893043_23893508_23893650_23893857
transcript_54573.known	chr17	-	635	5	FSM	ENSMUSG00000023905.16	ENSMUST00000233428.2	635	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.1306813834597	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTGCCCTATCTCTGGGT	NA	False	NA	NA	False	NA	NA	NA	23896394	23894796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896094_23896172_23896300
transcript_54574.known	chr17	-	984	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	6.34209919681348	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGGCCTGATCCCTAAC	NA	False	NA	-1	True	AATAAA	-18	NA	23896442	23894418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
transcript_54576.known	chr17	+	1622	3	FSM	ENSMUSG00000023906.4	ENSMUST00000024699.4	1622	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGATGTCTCTTGGT	NA	False	NA	9	True	AATAAA	-23	NA	23898222	23901420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23898382_23898731_23898796_23900021
transcript_54577.known	chr17	+	1078	2	FSM	ENSMUSG00000023906.4	ENSMUST00000233364.2	1078	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGACCTCCAGCTCCAGTTT	NA	False	NA	NA	False	NA	NA	NA	23898632	23900936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23898796_23900021
transcript_54578.known	chr17	+	1431	2	FSM	ENSMUSG00000023906.4	ENSMUST00000232719.2	1431	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGTGTCTGATGTCTCT	NA	False	NA	5	True	AATAAA	-19	NA	23898345	23901416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23898382_23900021
transcript_54579.known	chr17	-	1443	1	FSM	ENSMUSG00000066720.8	ENSMUST00000085989.8	1443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCTCTGGTCTGTGAAA	NA	False	NA	NA	False	AATAAA	-17	NA	23903000	23901557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23901600_23903000
transcript_54586.nnic	chr17	+	1635	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_3	138.628412436607	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCTTCTTGTCCCTTTA	2945	False	NA	32	True	AAAAAG	-43	NA	23945316	23955707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_23945616_23951310_23951799_23952796_23952890_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
transcript_54587.known	chr17	+	2040	8	FSM	ENSMUSG00000023908.9	ENSMUST00000024701.9	2040	8	0	0	0	0	multi-exon	TRUE	canonical	3	384	junction_2	52.6761379583211	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATAGCTCTTCTTGTCCCT	2938	False	NA	29	True	AATAAA	-43	NA	23945309	23955704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
transcript_5459.known	chr1	-	2753	14	FSM	ENSMUSG00000026469.15	ENSMUST00000111774.2	2753	14	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	3.83073833784269	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAAAAAAAAATTTTAA	NA	False	NA	NA	False	NA	NA	NA	155293161	155158413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_155159181_155165940_155166078_155168854_155169022_155183367_155183563_155184696_155184869_155188504_155188685_155188916_155189108_155200059_155200142_155204344_155204429_155206083_155206234_155207908_155208133_155221298_155221401_155260356_155260409_155292911
transcript_54596.known	chr17	+	2902	7	FSM	ENSMUSG00000023908.9	ENSMUST00000233954.2	2902	7	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	45.7484061653154	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCATAGCTCTTCTTGTC	3071	False	NA	26	True	AATAAA	-40	NA	23945442	23955701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_23945616_23951310_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
transcript_54598.nic	chr17	+	2812	6	NIC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	-5	0	intron_retention	FALSE	canonical	3	384	junction_2	57.1615255219803	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCTTCTTGTCCCTTTA	2945	False	NA	32	True	AAAAAG	-43	NA	23945316	23955707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_23945616_23951310_23951799_23952796_23954347_23954536_23954695_23955297_23955376_23955468
transcript_54607.known	chr17	-	2575	3	FSM	ENSMUSG00000023909.5	ENSMUST00000024702.5	2575	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	3.5	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCGCCTGACCACATTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	23959372	23955159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23956974_23957113_23957336_23958833
transcript_54617.nic	chr17	-	3481	9	NIC	ENSMUSG00000040097.17	novel	2943	7	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_8	43.4667617266343	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGTGTGTCAGTAATA	7502	False	NA	1	True	AATAAA	-25	NA	23990599	23971766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23989208_23989307_23990388
transcript_54618.nic	chr17	-	3399	8	NIC	ENSMUSG00000040097.17	novel	2943	7	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	24.7831410768016	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGTGTGTCAGTAATA	7486	False	NA	1	True	AATAAA	-25	NA	23990615	23971766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
transcript_54619.nic	chr17	-	2650	8	NIC	ENSMUSG00000040097.17	novel	2443	7	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	46.0230643154016	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTGTTTGACTACAG	7502	False	NA	NA	False	AATATA	-26	NA	23990599	23974387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23989208_23989307_23990388
transcript_54620.nic	chr17	-	2387	8	NIC	ENSMUSG00000040097.17	novel	2443	7	NA	NA	-23	-257	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	46.0230643154016	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	7502	False	NA	NA	False	NA	NA	NA	23990599	23974650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23989208_23989307_23990388
transcript_54621.known	chr17	-	2443	7	FSM	ENSMUSG00000040097.17	ENSMUST00000086325.13	2443	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	22.386131619574	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATGTTGTGTGTTTGA	7605	False	NA	NA	False	AATATA	-20	NA	23990496	23974393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
transcript_54623.known	chr17	-	2123	10	FSM	ENSMUSG00000040680.10	ENSMUST00000046525.10	2123	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_8	4.5242829047783	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTTAGCAAGTTCTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	23964807	23960170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23960946_23961170_23961250_23961330_23961457_23961535_23961869_23962193_23962348_23962528_23962654_23962726_23962819_23963516_23963692_23963908_23964078_23964712
transcript_54624.known	chr17	-	694	3	FSM	ENSMUSG00000023911.13	ENSMUST00000024704.10	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTAGTTTTTGTTGTTGT	NA	False	NA	0	True	AATAAA	-26	NA	24005055	23995889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_23996074_23998601_23999031_24004974
transcript_54639.nic	chr17	+	1025	5	ISM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	-209	14708	-209	0	5prime_fragment	FALSE	canonical	3	209	junction_1	15.9275704361965	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAGATAGAGGACGGT	NA	False	NA	45	True	NA	NA	NA	24021951	24029002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_24022373_24025905_24026177_24027039_24027148_24027327_24027493_24028942
transcript_54642.known	chr17	-	578	5	FSM	ENSMUSG00000055839.7	ENSMUST00000233593.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	5034.57517448096	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCATTTCTCATTTTTAT	NA	False	NA	-5	True	AGTAAA	-16	NA	24048072	24043713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24043954_24045559_24045641_24046441_24046548_24047817_24047953_24048056
transcript_54646.known	chr17	-	414	4	FSM	ENSMUSG00000055839.7	ENSMUST00000233519.2	414	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	5439.43761390418	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATTGACTTTTCTGTTC	NA	False	NA	-36	True	AATAAA	-18	NA	24048088	24043782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24043954_24046441_24046548_24047817_24047923_24048056
transcript_54647.known	chr17	-	537	4	FSM	ENSMUSG00000055839.7	ENSMUST00000069579.7	537	4	0	0	0	0	multi-exon	FALSE	canonical	3	7596	junction_3	2024.23060829431	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTCTCATTTTTATTT	NA	False	NA	-3	True	AGTAAA	-18	NA	24048110	24043711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24043954_24046441_24046548_24047817_24047953_24048056
transcript_5465.known	chr1	+	5592	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	0	0	0	0	multi-exon	TRUE	canonical	3	134	junction_7	98.5478232605254	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTTGGCCAAATGTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	155433867	155567076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
transcript_54650.known	chr17	-	366	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233857.2	366	3	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_2	5504	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGACTTTTCTGTTCCCTC	NA	False	NA	-32	True	AATAAA	-22	NA	24047805	24043778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24043954_24046441_24046548_24047720
transcript_54654.known	chr17	-	581	3	FSM	ENSMUSG00000055839.7	ENSMUST00000232702.2	581	3	0	0	0	0	multi-exon	FALSE	canonical	3	11428	junction_1	404.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTACTGCATTTCTCATT	NA	False	NA	-10	True	AGTAAA	-11	NA	24048057	24043718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24043954_24046441_24046548_24047817
transcript_54655.known	chr17	+	8864	15	FSM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_12	24.3951316655515	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATTGGTCTGTAGTCTT	NA	False	NA	11	True	AATAAA	-13	NA	24022160	24043710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24022373_24025905_24026177_24027039_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24030706_24031401_24031595_24034095_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
transcript_54656.known	chr17	-	512	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233796.2	512	3	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_2	5708.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTTCTGTTCCCTCT	NA	False	NA	-31	True	AATAAA	-23	NA	24047785	24043777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24043954_24046441_24046548_24047555
transcript_54661.known	chr17	-	1799	5	FSM	ENSMUSG00000024114.16	ENSMUST00000151797.3	1799	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	4.71036092035419	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGGATGCCTTTAA	NA	False	NA	-6	True	NA	NA	NA	24063146	24060025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24061500_24062415_24062585_24062812_24062846_24062930_24062958_24063050
transcript_54673.known	chr17	+	1253	6	FSM	ENSMUSG00000050762.6	ENSMUST00000059482.6	1253	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	4.88262224629348	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	4531	False	NA	NA	False	NA	NA	NA	24257117	24264928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24257336_24261027_24261055_24261775_24261939_24263233_24263506_24263832_24264003_24264525
transcript_54674.known	chr17	-	2443	6	FSM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	0	0	0	0	multi-exon	FALSE	canonical	3	983	junction_3	66.4090355298133	1350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGCAACTGTGAATATC	NA	False	NA	-22	True	AATAAA	-20	NA	24292459	24266707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24268419_24274898_24275025_24276714_24276811_24278195_24278288_24279216_24279326_24292150
transcript_54680.known	chr17	-	1724	14	FSM	ENSMUSG00000024122.17	ENSMUST00000115411.8	1724	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	40.8150685713647	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTTGTTTGCCATGGAG	NA	False	NA	-6	True	AATAAA	-15	NA	24360527	24292656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24292725_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
transcript_54681.known	chr17	-	7161	14	FSM	ENSMUSG00000024122.17	ENSMUST00000102927.10	7161	14	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_7	13.9033008723802	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTGCCATGGAGCCT	NA	False	NA	-3	True	AATAAA	-18	NA	24360569	24292653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24298117_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
transcript_54685.nic	chr17	-	1516	11	ISM	ENSMUSG00000024122.17	ENSMUST00000115407.9	1730	12	-85	9160	-66	140	5prime_fragment	FALSE	canonical	3	123	junction_4	13.4836938559135	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTGTTATTGGAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	24360635	24307014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
transcript_54688.known	chr17	-	1526	12	FSM	ENSMUSG00000036820.13	ENSMUST00000129523.3	1526	12	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_9	128.890369200834	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382638	24374806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24380555_24380688_24381949_24382090_24382169_24382307_24382555
transcript_54690.known	chr17	-	1496	11	FSM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	20.5156038175824	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382740	24374806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
transcript_54693.nnic	chr17	-	1379	10	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_9	102.741435015946	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382760	24374806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382555
transcript_54694.nic	chr17	-	1598	10	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-22	0	intron_retention	FALSE	canonical	3	306	junction_8	20.5804653872442	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382762	24374806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382307_24382555
transcript_54711.known	chr17	-	1530	10	FSM	ENSMUSG00000036820.13	ENSMUST00000130520.2	1530	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_7	20.9644025156813	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382704	24374806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
transcript_54714.known	chr17	-	796	4	FSM	ENSMUSG00000024121.14	ENSMUST00000098862.9	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_3	1244.06671846811	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTAGAGTGCTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	24388651	24383126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24383583_24383672_24383857_24388179_24388261_24388576
transcript_54715.known	chr17	-	1183	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	2196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTTGTGTTCTGGCGC	NA	False	NA	NA	False	AATAAA	-15	NA	24388435	24382839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
transcript_54729.known	chr17	-	2166	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCGGGCAGTGGTGGTGC	3337	False	NA	NA	False	NA	NA	NA	24439764	24434027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
transcript_5473.known	chr1	+	993	4	FSM	ENSMUSG00000033701.14	ENSMUST00000080138.13	993	4	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_3	63.2525800966956	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTT	NA	False	NA	15	True	NA	NA	NA	155433865	155448034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155447943
transcript_5474.known	chr1	+	1255	4	FSM	ENSMUSG00000033701.14	ENSMUST00000097529.5	1255	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	164.081280671095	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCCGGAGATAAGTGTT	NA	False	NA	6	True	NA	NA	NA	155433871	155463544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155463185
transcript_54746.known	chr17	-	2160	9	FSM	ENSMUSG00000024118.15	ENSMUST00000137648.8	2160	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_8	21.2485293608758	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGGCTTGACGGTTAA	3276	False	NA	0	True	AATAAA	-21	NA	24439825	24434212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490_24439590_24439664
transcript_54771.known	chr17	-	5038	6	FSM	ENSMUSG00000117406.2	ENSMUST00000024931.6	5038	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.83303027798234	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	AGTAAA	-36	NA	24428505	24422821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24425922_24426181_24426257_24426366_24426418_24426539_24426690_24426772_24426962_24427032
transcript_54772.known	chr17	-	704	6	FSM	ENSMUSG00000117406.2	ENSMUST00000234909.2	704	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.83303027798234	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTACCAACTCTAGACGCG	NA	False	NA	NA	False	NA	NA	NA	24428373	24425798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24425922_24426181_24426257_24426366_24426418_24426539_24426690_24426772_24426962_24428257
transcript_54783.nic	chr17	-	3220	17	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-5	-1032	combination_of_known_junctions	FALSE	canonical	3	43	junction_16	200.408917902872	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8670	False	NA	-4	True	AATAAA	-19	NA	24470388	24442203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470154
transcript_54785.known	chr17	-	4133	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	1683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCTTCTATCCCAAATAT	8675	False	NA	NA	False	NA	NA	NA	24470383	24441171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
transcript_548.known	chr1	-	1266	1	FSM	ENSMUSG00000102982.2	ENSMUST00000194537.2	1266	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAAGAATTCATGG	NA	False	NA	NA	False	NA	NA	NA	13712972	13711706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_13711700_13713000
transcript_5480.known	chr1	-	2433	13	FSM	ENSMUSG00000033684.15	ENSMUST00000194632.2	2433	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	5.99247212944893	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGAACGTGTTTGACTTG	NA	False	NA	-5	True	AATAAA	-19	NA	155688590	155653907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_155654598_155655463_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
transcript_5481.known	chr1	-	3348	12	FSM	ENSMUSG00000033684.15	ENSMUST00000035325.15	3348	12	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	6.25887799202127	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGTGTTTGACTTGATCC	NA	False	NA	-1	True	AATAAA	-23	NA	155688635	155653903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
transcript_5482.known	chr1	-	2664	2	FSM	ENSMUSG00000033684.15	ENSMUST00000140809.2	2664	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	155688584	155677192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_155679544_155688271
transcript_54826.known	chr17	+	6476	33	FSM	ENSMUSG00000024130.17	ENSMUST00000039013.15	6476	33	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	5.69230566203186	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTCTTTGAGTCATACAT	NA	False	NA	10	True	AATAAA	-17	NA	24570996	24629175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24571226_24576892_24576966_24579861_24580064_24583450_24583561_24583666_24583932_24585059_24585188_24585741_24585908_24593217_24593478_24595337_24595455_24595638_24595760_24596659_24596834_24600872_24601055_24602873_24603018_24603420_24603551_24604371_24604527_24604790_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259_24616564_24617308_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
transcript_54828.known	chr17	+	3139	11	FSM	ENSMUSG00000024130.17	ENSMUST00000136295.2	3139	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	5.75239080730786	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATGAACTGCATTTGTA	NA	False	NA	NA	False	AATATA	-11	NA	24571075	24602318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24571226_24579861_24580064_24583450_24583561_24583666_24583932_24585059_24585188_24585741_24585908_24593217_24593478_24595337_24595455_24595638_24595760_24596659_24596834_24600872
transcript_5483.known	chr1	+	1189	1	FSM	ENSMUSG00000102833.2	ENSMUST00000193347.2	1189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTCTCCAGCCTAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	155849063	155850252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155849100_155850300
transcript_54830.known	chr17	+	1920	9	FSM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	446.592917963328	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	913	False	NA	NA	False	AATAAA	-18	NA	24633648	24644869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24633709_24634014_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_54832.known	chr17	+	1816	8	FSM	ENSMUSG00000034681.18	ENSMUST00000088512.13	1816	8	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_1	319.314188567323	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	901	False	NA	NA	False	AATAAA	-24	NA	24633636	24644875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_54834.nic	chr17	+	2293	8	NIC	ENSMUSG00000034681.18	novel	1920	9	NA	NA	-35	0	intron_retention	FALSE	canonical	3	495	junction_1	374.654888816743	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCTGGTTTTACTGT	849	False	NA	NA	False	AATAAA	-21	NA	24633584	24644872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_54838.known	chr17	+	1769	8	FSM	ENSMUSG00000034681.18	ENSMUST00000234977.2	1769	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	570.995335768505	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	889	False	NA	NA	False	AATAAA	-24	NA	24633624	24644875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24633709_24634014_24634137_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_5484.known	chr1	-	2723	11	FSM	ENSMUSG00000026466.17	ENSMUST00000136331.8	2723	11	0	0	0	0	multi-exon	FALSE	canonical	2	47	junction_4	24.0865107477194	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGGGTTTTCTGCCACC	NA	False	NA	NA	False	NA	NA	NA	155912226	155881979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155895713_155895770_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
transcript_54841.known	chr17	+	1646	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_1	362.779738807019	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	884	False	NA	NA	False	AATAAA	-18	NA	24633619	24644869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_5485.known	chr1	-	4234	10	FSM	ENSMUSG00000026466.17	ENSMUST00000097527.10	4234	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	20.1935083078146	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGTATGTTATAAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	155912173	155880359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
transcript_54852.known	chr17	+	1839	2	FSM	ENSMUSG00000034681.18	ENSMUST00000234729.2	1839	2	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAAGAC	932	False	NA	NA	False	NA	NA	NA	24633667	24635812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24633709_24634014
transcript_54853.known	chr17	+	2106	1	FSM	ENSMUSG00000034681.18	ENSMUST00000234342.2	2106	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCAAAAAAAAAAAAAAAAAT	803	False	NA	NA	False	NA	NA	NA	24633538	24635644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24633500_24635600
transcript_54856.known	chr17	+	1137	7	FSM	ENSMUSG00000024132.7	ENSMUST00000234304.2	1137	7	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_1	41.5508390074403	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	4840	False	NA	11	True	TATAAA	-24	NA	24645614	24658294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24645717_24645826_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
transcript_54868.nic	chr17	-	2478	14	NIC	ENSMUSG00000024137.10	novel	2574	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_6	31.9209452485688	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGTTGTGATTGGG	NA	False	NA	-4	True	AATAAA	-13	NA	24674285	24662755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664526_24664919_24665130_24665487_24665655_24665755_24665816_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_54869.known	chr17	-	2574	14	FSM	ENSMUSG00000024137.10	ENSMUST00000056032.9	2574	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	25.0001183429152	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTTGTGATTGGGTAG	NA	False	NA	-1	True	AATAAA	-16	NA	24674285	24662752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664526_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_54870.nic	chr17	-	2562	14	NIC	ENSMUSG00000024137.10	novel	2552	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_9	26.3685755236784	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGTTGTGATTGGG	NA	False	NA	-4	True	AATAAA	-13	NA	24674366	24662755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665816_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_54871.nic	chr17	-	2655	14	NIC	ENSMUSG00000024137.10	novel	2552	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_6	16.2546306556464	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGTTGTGATTGGG	NA	False	NA	-4	True	AATAAA	-13	NA	24674366	24662755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_54876.known	chr17	-	2642	13	FSM	ENSMUSG00000024137.10	ENSMUST00000226941.2	2642	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	15.7797338380595	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGAGAGAGAGAGAGAG	NA	False	NA	-93	True	NA	NA	NA	24674366	24662844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_54877.known	chr17	-	2708	13	FSM	ENSMUSG00000024137.10	ENSMUST00000227293.2	2708	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_6	16.8595093509733	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTGTGATTGGGTAGA	NA	False	NA	0	True	AATAAA	-17	NA	24674260	24662751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_54893.known	chr17	-	1377	2	FSM	ENSMUSG00000024137.10	ENSMUST00000226743.2	1377	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	7412	False	NA	NA	False	NA	NA	NA	24689165	24684431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24685707_24689063
transcript_54894.known	chr17	+	2627	2	FSM	ENSMUSG00000043445.8	ENSMUST00000053024.8	2627	2	0	0	0	0	multi-exon	FALSE	canonical	3	1130	junction_1	0	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCCTTCCTCTAATTT	NA	False	NA	25	True	ATTAAA	-22	NA	24689365	24692084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24690124_24690215
transcript_54896.known	chr17	+	2428	1	FSM	ENSMUSG00000043445.8	ENSMUST00000234216.2	2428	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGAAGCTGTTCCCGG	NA	False	NA	NA	False	AATAAA	-13	NA	24689408	24691836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24689400_24691800
transcript_54898.nnic	chr17	-	3093	10	NNC	ENSMUSG00000024142.16	novel	3358	9	NA	NA	-1	0	intron_retention	TRUE	non_canonical	0	0	junction_1	25.399037602065	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGGCCGATTGCTTTC	9586	False	NA	0	True	AATAAA	-17	NA	24698053	24692524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_24693061_24693328_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697453_24697985
transcript_54901.known	chr17	-	3340	9	FSM	ENSMUSG00000024142.16	ENSMUST00000179163.3	3340	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	23.0813777751676	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGGCCGATTGCTTTC	9587	False	NA	0	True	AATAAA	-17	NA	24698052	24692524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697433_24697985
transcript_54902.known	chr17	-	1574	9	FSM	ENSMUSG00000024142.16	ENSMUST00000234335.2	1574	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	26.1951808545007	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGTTGCTCGGGAAGC	9627	False	NA	NA	False	AATAAA	-14	NA	24698012	24694275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697458_24697985
transcript_54912.nic	chr17	-	3473	8	NIC	ENSMUSG00000024142.16	novel	3358	9	NA	NA	-1	0	intron_retention	FALSE	canonical	3	60	junction_7	10.3509833901353	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGAGGCCGATTGCT	9586	False	NA	-3	True	AATAAA	-14	NA	24698053	24692527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24694926_24695019_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697453_24697985
transcript_54927.nnic	chr17	-	2682	21	NNC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_14	101.901373886715	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTGTGGAGACAGCTT	NA	False	NA	-11	True	AATAAA	-13	NA	24746937	24727827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732297_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
transcript_54937.known	chr17	-	3003	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176652.8	3003	21	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_18	53.1587010751768	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCATGTTCAGATGAGGA	NA	False	NA	NA	False	NA	NA	NA	24746912	24727535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
transcript_54941.known	chr17	-	2687	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176086.8	2687	21	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_19	106.585693223809	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746864	24727823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738087_24738221_24746739
transcript_54946.nic	chr17	-	2763	21	NIC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_17	98.1200667549712	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTGTGGAGACAGCTT	NA	False	NA	-11	True	AATAAA	-13	NA	24746927	24727827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735571_24737715_24737774_24738104_24738221_24746739
transcript_54948.known	chr17	-	2667	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176668.8	2667	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_17	106.150647666418	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746824	24727823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735574_24737715_24737774_24738104_24738221_24746739
transcript_54961.known	chr17	-	2503	20	FSM	ENSMUSG00000052752.16	ENSMUST00000176353.8	2503	20	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_16	139.813924621282	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746820	24727823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24735478_24735574_24737715_24737774_24738104_24738221_24746739
transcript_54984.known	chr17	+	2074	10	FSM	ENSMUSG00000033597.10	ENSMUST00000234171.2	2074	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	2.74873708374511	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAGAAAACGAA	7670	False	NA	NA	False	NA	NA	NA	24707574	24719251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24708038_24714939_24714992_24715093_24715192_24715399_24715546_24715627_24715724_24715837_24715969_24717831_24717941_24718034_24718144_24718226_24718322_24718476
transcript_54985.known	chr17	-	1575	9	FSM	ENSMUSG00000079657.11	ENSMUST00000035797.16	1575	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_8	7.78520230951001	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGGAAAACCACCTCCT	NA	False	NA	-2	True	AATAAA	-23	NA	24752862	24748027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
transcript_54994.known	chr17	+	298	2	FSM	ENSMUSG00000093565.2	ENSMUST00000176921.2	298	2	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTTTCAGACGTTGTG	4764	False	NA	14	True	AATAAA	-17	NA	24747221	24747718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24747411_24747609
transcript_54995.known	chr17	-	693	2	FSM	ENSMUSG00000052752.16	ENSMUST00000176361.2	693	2	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGAAAACTTGCCCACCCA	NA	False	NA	NA	False	NA	NA	NA	24746758	24737546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24738221_24746739
transcript_54996.known	chr17	+	477	1	FSM	ENSMUSG00000093565.2	ENSMUST00000176215.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGTTTCAGACGTTGT	4783	False	NA	13	True	AATAAA	-16	NA	24747240	24747717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24747200_24747700
transcript_54997.known	chr17	-	2504	20	FSM	ENSMUSG00000052752.16	ENSMUST00000088464.12	2504	20	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_18	54.3646251286069	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24738182	24727823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104
transcript_54998.known	chr17	-	5598	42	FSM	ENSMUSG00000002496.11	ENSMUST00000227745.2	5598	42	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_16	65.9182609954111	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGGCCCGTGGAGTTC	NA	False	NA	-43	True	AATAAA	-11	NA	24851569	24815494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24820362_24820432_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24825197_24825327_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
transcript_55.known	ERCC-00162	+	507	1	FSM	ERCC-00162A	DQ516750	507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00162_+_0_500
transcript_55002.nic	chr17	-	5552	41	NIC	ENSMUSG00000002496.11	novel	5598	42	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_11	56.8017110217641	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATTTGACTTTGTCTT	NA	False	NA	8	True	NA	NA	NA	24851604	24815443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24820362_24820432_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
transcript_55005.nic	chr17	-	5555	41	NIC	ENSMUSG00000002496.11	novel	5598	42	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_11	57.1288018428533	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATTTGACTTTGTCTT	NA	False	NA	8	True	NA	NA	NA	24851604	24815443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24820362_24820432_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
transcript_55007.known	chr17	-	6266	41	FSM	ENSMUSG00000002496.11	ENSMUST00000226284.2	6266	41	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_15	53.8189964139058	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCACTTGGTCCAATACT	NA	False	NA	NA	False	AATAAA	-21	NA	24851601	24814789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24825197_24825327_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
transcript_55013.known	chr17	-	5432	40	FSM	ENSMUSG00000002496.11	ENSMUST00000228412.2	5432	40	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_15	40.1073674085831	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGGCCCGTGGAGTTC	NA	False	NA	-43	True	AATAAA	-11	NA	24851604	24815494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
transcript_55014.known	chr17	-	5459	40	FSM	ENSMUSG00000002496.11	ENSMUST00000226398.2	5459	40	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_39	50.8383497379318	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATTTGACTTTGTCTT	NA	False	NA	8	True	NA	NA	NA	24851582	24815443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851081_24851511
transcript_5502.known	chr1	+	5135	5	FSM	ENSMUSG00000050565.17	ENSMUST00000060404.5	5135	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	13.683932183404	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTGCGGTTGTTAGTG	NA	False	NA	51	True	AATAAA	-14	NA	155916635	155944607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155916749_155935156_155935334_155937333_155937916_155939338_155939441_155940446
transcript_55027.known	chr17	+	1079	6	FSM	ENSMUSG00000041429.4	ENSMUST00000047611.4	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	26.3772629360971	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGGCCCGTTGGCTT	908	False	NA	11	True	AATAAA	-23	NA	24851655	24857811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_55029.known	chr17	+	2084	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234308.2	2084	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	906	False	NA	10	True	AATAAA	-22	NA	24851653	24857810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24852833_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_55030.known	chr17	+	893	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234635.2	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGGTGGTAAACTTTGGG	945	False	NA	-47	True	NA	NA	NA	24851692	24857753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24851738_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_55031.nnic	chr17	+	963	5	NIC	ENSMUSG00000041429.4	novel	2084	6	NA	NA	-54	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	98.3142283700584	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	852	False	NA	10	True	AATAAA	-22	NA	24851599	24857810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_24851829_24852900_24853140_24854561_24854722_24857397_24857504_24857581
transcript_55038.nic	chr17	+	2385	4	NIC	ENSMUSG00000041429.4	novel	2084	6	NA	NA	-54	0	intron_retention	FALSE	canonical	3	202	junction_1	27.4023518860861	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	852	False	NA	10	True	AATAAA	-22	NA	24851599	24857810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_24851829_24852900_24854722_24857397_24857504_24857581
transcript_55042.known	chr17	-	2136	7	FSM	ENSMUSG00000002504.16	ENSMUST00000002572.6	2136	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	35.3478743663919	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	5141	False	NA	-6	True	ATTAAA	-17	NA	24869301	24858259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24859364_24859568_24859632_24860682_24860727_24860792_24860947_24861164_24861345_24866500_24866702_24868911
transcript_55044.known	chr17	-	1717	6	FSM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	50.6501727539008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	NA	False	NA	-6	True	ATTAAA	-17	NA	24863964	24858259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24859364_24859568_24859632_24860682_24860727_24860792_24860947_24861164_24861345_24863792
transcript_55045.known	chr17	-	2035	6	FSM	ENSMUSG00000002504.16	ENSMUST00000234557.2	2035	6	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	24.9671784549236	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	5179	False	NA	-6	True	ATTAAA	-17	NA	24869263	24858259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24859364_24860682_24860727_24860792_24860947_24861164_24861345_24866500_24866702_24868911
transcript_55047.known	chr17	-	1840	6	FSM	ENSMUSG00000002504.16	ENSMUST00000234121.2	1840	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	38.2601620487943	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAACTCTGGCGCCTGTGT	7642	False	NA	-11	True	ATTAAA	-12	NA	24866800	24858264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24859364_24859568_24859632_24860682_24860727_24860792_24860947_24861164_24861345_24866500
transcript_55048.known	chr17	-	638	2	FSM	ENSMUSG00000071230.8	ENSMUST00000095544.6	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCGTGTGACCCTTTTT	8957	False	NA	NA	False	AATAAA	-20	NA	24877431	24876303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24876479_24876968
transcript_55055.known	chr17	+	3283	12	FSM	ENSMUSG00000041130.11	ENSMUST00000047179.7	3283	12	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_6	142.469309439723	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTGGTGTTCTGAGTC	1236	False	NA	12	True	AATAAA	-20	NA	24888720	24900990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897027_24897569_24897679_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
transcript_55058.known	chr17	+	3352	12	FSM	ENSMUSG00000041130.11	ENSMUST00000234956.2	3352	12	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_10	128.150802179204	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTGGTGTTCTGAGTC	1176	False	NA	12	True	AATAAA	-20	NA	24888660	24900990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897027_24897569_24897688_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
transcript_5507.known	chr1	-	784	4	FSM	ENSMUSG00000026466.17	ENSMUST00000141980.2	784	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	11.7284080571728	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACTTGTCAAGTGTTCT	NA	False	NA	NA	False	AATAAA	-41	NA	155911893	155905918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_155906178_155907159_155907220_155909471_155909547_155911503
transcript_55081.nic	chr17	+	4227	10	NIC	ENSMUSG00000041130.11	novel	3352	12	NA	NA	-9	0	intron_retention	FALSE	canonical	3	262	junction_8	119.890485006366	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTGGTGTTCTGAGTC	1167	False	NA	12	True	AATAAA	-20	NA	24888651	24900990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
transcript_5509.known	chr1	+	2491	3	FSM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	87	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGGTTTTATTGTT	NA	False	NA	3	True	AATAAA	-15	NA	155911471	155929275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155911667_155916820_155916881_155927039
transcript_55098.known	chr17	-	1965	4	FSM	ENSMUSG00000007021.6	ENSMUST00000007236.5	1965	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	5.18544972870135	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAGGTCCCCTGGACTTA	NA	False	NA	-1	True	AATAAA	-23	NA	24908929	24904065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24905415_24905492_24905636_24906476_24906715_24908694
transcript_551.known	chr1	-	4366	18	FSM	ENSMUSG00000025932.15	ENSMUST00000168081.9	4366	18	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_12	12.3526610612498	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGCTCCTTGGATGTC	NA	False	NA	-15	True	AATAAA	-17	NA	14380459	14239181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341052_14344288_14344435_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
transcript_55101.known	chr17	-	1177	4	FSM	ENSMUSG00000040888.11	ENSMUST00000234520.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	273.584843634779	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915086	24912163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24912587_24913141_24913417_24914227_24914425_24914804
transcript_55105.known	chr17	-	682	3	FSM	ENSMUSG00000040888.11	ENSMUST00000234235.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	299	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGATTTCTGGATGTA	NA	False	NA	6	True	ATTAAA	-27	NA	24915064	24913158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24913417_24914227_24914392_24914804
transcript_55106.known	chr17	-	1776	3	FSM	ENSMUSG00000040888.11	ENSMUST00000046839.10	1776	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_2	47.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915130	24912163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24913417_24914227_24914425_24914804
transcript_55107.known	chr17	-	1162	4	FSM	ENSMUSG00000040888.11	ENSMUST00000234197.2	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	265.654328446239	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTTTCTGTGTGCTTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24915067	24912160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24912611_24913164_24913417_24914227_24914425_24914804
transcript_5511.nnic	chr1	+	1944	3	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	-15	-733	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	105	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGTTCTAATTTTCTC	NA	False	NA	8	True	AATAAA	-12	NA	155911456	155928542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_155911838_155916820_155916881_155927039
transcript_55113.known	chr17	-	5226	22	FSM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_14	40.675587289682	1119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTGGGCTACAGTACAG	NA	False	NA	NA	False	NA	NA	NA	24926634	24916922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
transcript_5512.nnic	chr1	+	2677	3	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	105	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGGTTTTATTGTT	NA	False	NA	3	True	AATAAA	-15	NA	155911456	155929275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_155911838_155916820_155916881_155927039
transcript_55134.known	chr17	+	2238	9	FSM	ENSMUSG00000019320.15	ENSMUST00000019464.8	2238	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	2.89125837655509	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACTGTGCACTGAGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	24915207	24919503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24916099_24917193_24917383_24917491_24917573_24917759_24917836_24917918_24918097_24918242_24918425_24918517_24918632_24918871_24918990_24919094
transcript_55145.known	chr17	+	998	6	FSM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	0	0	0	0	multi-exon	FALSE	canonical	3	3280	junction_1	2855.80020309545	2624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATGTTTTTTTTTGTCTG	6190	False	NA	1	True	AATAAA	-20	NA	24939036	24940900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
transcript_55146.known	chr17	+	1034	6	FSM	ENSMUSG00000044533.16	ENSMUST00000152407.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4131.25825869069	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCGGTTGGTGTGTTTG	4243	False	NA	NA	False	NA	NA	NA	24937089	24940694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24937133_24938925_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596
transcript_5515.known	chr1	+	2589	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	41.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGGCTTTTGTCTCTT	NA	False	NA	10	True	AATAAA	-19	NA	155916662	155929482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155916749_155916820_155916881_155927039
transcript_55150.known	chr17	+	962	5	FSM	ENSMUSG00000044533.16	ENSMUST00000146867.2	962	5	0	0	0	0	multi-exon	FALSE	canonical	2	95	junction_4	4232.31002970009	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6378	False	NA	0	True	AATAAA	-19	NA	24939224	24940899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940702_24940776
transcript_55155.known	chr17	+	1094	5	FSM	ENSMUSG00000044533.16	ENSMUST00000054289.13	1094	5	0	0	0	0	multi-exon	FALSE	canonical	3	8303	junction_1	1140.19655651997	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTTTTTTTGTCTGTCT	6237	False	NA	4	True	AATAAA	-23	NA	24939083	24940903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
transcript_55158.known	chr17	-	732	4	FSM	ENSMUSG00000040048.15	ENSMUST00000045602.9	732	4	0	0	0	0	multi-exon	FALSE	canonical	3	2001	junction_1	127.206743357243	820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943452	24941033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24941195_24941354_24941495_24941628_24941768_24943160
transcript_55162.known	chr17	-	834	3	FSM	ENSMUSG00000040048.15	ENSMUST00000129451.2	834	3	0	0	0	0	multi-exon	FALSE	canonical	3	2248	junction_2	20.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943394	24941033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_24941495_24941628_24941768_24943160
transcript_55163.known	chr17	+	1375	10	FSM	ENSMUSG00000002500.16	ENSMUST00000170239.9	1375	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.96158079150358	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTCTCTGTGTGTC	NA	False	NA	18	True	AATAAA	-18	NA	24946793	24955117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24946861_24947290_24947484_24949842_24950012_24951309_24951446_24952282_24952470_24952557_24952719_24952890_24952993_24954390_24954487_24954695_24954816_24954973
transcript_55164.known	chr17	+	886	5	FSM	ENSMUSG00000075705.14	ENSMUST00000115262.9	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	30.3685692781204	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTGTTTGTTGTCTCATG	NA	False	NA	19	True	AATAAA	-19	NA	24955615	24961752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879_24960912_24961283
transcript_55165.known	chr17	+	1211	4	FSM	ENSMUSG00000075705.14	ENSMUST00000101800.7	1211	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	11.8602979164381	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTCCGTGTTTGTTG	NA	False	NA	12	True	AATAAA	-12	NA	24955655	24961745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879
transcript_55166.known	chr17	+	1220	2	FSM	ENSMUSG00000039628.10	ENSMUST00000044922.8	1220	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGACTTGAAGGTGTGGG	NA	False	NA	NA	False	AATAAA	-22	NA	24971976	24977658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_24972473_24976934
transcript_55167.known	chr17	+	1191	9	FSM	ENSMUSG00000024158.18	ENSMUST00000118788.8	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_6	27.6812210713328	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069463	25083424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25069643_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
transcript_55168.known	chr17	+	1101	9	FSM	ENSMUSG00000024158.18	ENSMUST00000024974.16	1101	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	126.378152779664	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069640	25083424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25069730_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
transcript_55172.known	chr17	-	1473	1	FSM	ENSMUSG00000045316.6	ENSMUST00000049642.6	1473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTTCTTTTCCCAGG	NA	False	NA	3	True	AATAAA	-24	NA	25069338	25067865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25067900_25069300
transcript_55173.known	chr17	+	995	2	FSM	ENSMUSG00000046070.10	ENSMUST00000234862.2	995	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACCGCAACCTCATCAC	7173	False	NA	NA	False	NA	NA	NA	25096629	25099654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25096897_25098926
transcript_55174.known	chr17	+	2625	2	FSM	ENSMUSG00000046070.10	ENSMUST00000050714.8	2625	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTGACCTAGAGTGTG	7775	False	NA	9	True	ATTAAA	-16	NA	25097231	25100984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25097799_25098926
transcript_55175.known	chr17	+	500	2	FSM	ENSMUSG00000046070.10	ENSMUST00000234188.2	500	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGAGCCTGGAGCCACA	7732	False	NA	NA	False	NA	NA	NA	25097188	25099237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25097378_25098926
transcript_55176.known	chr17	+	2064	2	FSM	ENSMUSG00000046070.10	ENSMUST00000234754.2	2064	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTGACCTAGAGTGTG	8274	False	NA	9	True	ATTAAA	-16	NA	25097730	25100984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25097799_25098988
transcript_55177.known	chr17	-	899	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234583.2	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	259.170257209855	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGAGATCTGCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	25105303	25102022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103458_25104392_25104592_25104692_25104812_25105252
transcript_5518.nnic	chr1	+	2473	2	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	-44	-2	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCAGCAGGTTTTATTG	NA	False	NA	1	True	AATAAA	-13	NA	155911427	155929273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_155911667_155927039
transcript_55180.known	chr17	-	950	7	FSM	ENSMUSG00000039183.7	ENSMUST00000235055.2	950	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_5	246.619646419339	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTAGTTGTTGGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	25105312	25102069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104609_25104692_25104812_25105252
transcript_55181.known	chr17	-	1445	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234579.2	1445	7	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_6	253.310580118557	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAAGGTGTCTGTCTTGTT	NA	False	NA	-5	True	AGTAAA	-25	NA	25105313	25101584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104838_25105252
transcript_55183.known	chr17	-	1423	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234489.2	1423	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	262.106636483872	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105294	25101592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103561_25104392_25104592_25104692_25104812_25105252
transcript_55186.known	chr17	-	1502	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234968.2	1502	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	246.820953999723	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	-11	True	AGTAAA	-19	NA	25105307	25101590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25102384_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
transcript_5519.known	chr1	+	2529	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGGCTTTTGTCTCTT	NA	False	NA	10	True	AATAAA	-19	NA	155916662	155929482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_155916749_155927039
transcript_55190.known	chr17	-	1191	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234293.2	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	321.432419024591	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTGGTCAAGGTGTCTG	NA	False	NA	-12	True	AGTAAA	-18	NA	25105303	25101591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105264
transcript_55191.known	chr17	-	1221	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234261.2	1221	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	327.65310924818	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25105289	25101585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104838_25105252
transcript_552.known	chr1	-	3426	17	FSM	ENSMUSG00000025932.15	ENSMUST00000080664.14	3426	17	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_15	12.9897796363141	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGATTACCGTGTCTGG	NA	False	NA	NA	False	AATAAA	-35	NA	14380343	14239889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344432_14344757_14344828_14353344_14353423_14374648_14374699_14379869
transcript_55202.known	chr17	-	1471	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234928.2	1471	6	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_4	61.1391854705311	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25104925	25101585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692
transcript_55210.nnic	chr17	-	5502	33	NIC	ENSMUSG00000024163.18	novel	5418	33	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	20.7717318428195	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTGTCTTGAAACTTCA	NA	False	NA	-26	True	AATAAA	-13	NA	25155967	25116507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_25118044_25118118_25118269_25118369_25118550_25118648_25118688_25118809_25118924_25119135_25119308_25119467_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313_25120504_25120578_25120762_25121251_25121418_25121977_25122137_25122262_25122359_25122898_25123026_25123622_25123794_25123880_25123938_25124141_25124273_25125120_25125203_25125782_25125936_25126302_25126361_25127384_25127403_25128123_25128136_25131721_25131841_25132503_25132607_25133432_25133680_25137061_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
transcript_55215.known	chr17	-	1521	8	FSM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	4.68606270481621	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGCATTTGTGAAGGC	1864	False	NA	NA	False	GATAAA	-16	NA	25114061	25111125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
transcript_55217.known	chr17	+	1641	7	FSM	ENSMUSG00000024160.17	ENSMUST00000117890.8	1641	7	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	37.7388688519174	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105616	25111123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
transcript_55221.known	chr17	+	1949	7	FSM	ENSMUSG00000024160.17	ENSMUST00000120943.8	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	56.1921307262463	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105653	25111123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
transcript_55224.nnic	chr17	+	2056	7	NNC	ENSMUSG00000024160.17	novel	1953	7	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	67.8052767530342	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCCTGTGTCTATTGT	NA	False	NA	NA	False	ATTAAA	-20	NA	25105695	25111121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_25106231_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
transcript_55228.known	chr17	+	1947	7	FSM	ENSMUSG00000024160.17	ENSMUST00000024976.5	1947	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	71.820957944043	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25106138	25111123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25106563_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
transcript_55230.known	chr17	-	5226	7	FSM	ENSMUSG00000073436.12	ENSMUST00000119848.8	5226	7	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_1	3.80423740350444	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTGTGTTACAGTG	1896	False	NA	NA	False	AATAAA	-16	NA	25114029	25107459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
transcript_5524.known	chr1	-	3759	18	FSM	ENSMUSG00000060985.16	ENSMUST00000121146.10	3759	18	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_17	4.02242846994794	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGTGATCTATATTTA	NA	False	NA	NA	False	GATAAA	-19	NA	156131234	156082865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156083416_156087300_156087506_156090398_156090543_156090975_156091159_156094782_156094942_156098135_156098271_156098768_156098970_156104131_156104199_156104867_156105081_156111834_156112056_156112955_156113165_156115797_156115952_156120896_156120954_156122004_156122089_156128166_156128361_156129083_156129477_156129936_156130173_156130880
transcript_55241.known	chr17	+	1950	6	FSM	ENSMUSG00000024160.17	ENSMUST00000134932.2	1950	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	61.4504678582678	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCTATTGTTTATC	NA	False	NA	NA	False	ATTAAA	-25	NA	25105732	25111126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109910_25109984_25110111_25110333
transcript_5525.known	chr1	-	3210	18	FSM	ENSMUSG00000060985.16	ENSMUST00000167528.9	3210	18	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_17	3.94424814452711	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTTTGTGATCTATATT	NA	False	NA	NA	False	GATAAA	-17	NA	156130918	156082867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156083416_156087300_156087506_156090398_156090543_156090975_156091159_156094782_156094942_156098135_156098271_156098768_156098970_156104131_156104199_156104867_156105081_156111834_156112056_156112955_156113165_156115797_156115952_156120896_156120954_156122004_156122089_156128166_156128361_156129314_156129477_156129936_156130173_156130880
transcript_55256.known	chr17	+	918	3	FSM	ENSMUSG00000038880.14	ENSMUST00000043907.14	918	3	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_1	12	436	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	False	NA	16	True	AATAAA	-16	NA	25114089	25115263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25114463_25114635_25114679_25114761
transcript_55258.known	chr17	-	1239	2	FSM	ENSMUSG00000024163.18	ENSMUST00000148360.2	1239	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTTAAAAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	25155919	25146093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25146924_25155510
transcript_55259.known	chr17	-	1575	7	FSM	ENSMUSG00000073436.12	ENSMUST00000139754.8	1575	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	12.9185482500507	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTTGGGCATTTGTGAA	1892	False	NA	NA	False	GATAAA	-13	NA	25114033	25111128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113730_25113828
transcript_55260.known	chr17	-	5418	33	FSM	ENSMUSG00000024163.18	ENSMUST00000117509.8	5418	33	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	18.6942661246036	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGTCTTGAAACTTCAC	NA	False	NA	-25	True	AATAAA	-14	NA	25155886	25116506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25118044_25118118_25118269_25118369_25118550_25118648_25118688_25118809_25118924_25119135_25119308_25119471_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313_25120504_25120578_25120762_25121251_25121418_25121977_25122137_25122262_25122359_25122898_25123026_25123622_25123794_25123880_25123938_25124141_25124273_25125120_25125203_25125782_25125936_25126302_25126361_25127384_25127403_25128123_25128136_25131721_25131841_25132503_25132607_25133432_25133680_25137061_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
transcript_55261.known	chr17	-	1430	6	FSM	ENSMUSG00000024165.10	ENSMUST00000233067.2	1430	6	0	0	0	0	multi-exon	TRUE	canonical	1	8	junction_1	714.702007832635	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	4793	False	NA	NA	False	NA	NA	NA	25179643	25156392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25157141_25163413_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
transcript_55270.known	chr17	-	2672	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	0	0	0	0	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	1306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGCCAATATTTTTCT	4773	False	NA	-1	True	ATTAAA	-17	NA	25179663	25161443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
transcript_55276.known	chr17	-	1705	3	FSM	ENSMUSG00000024165.10	ENSMUST00000233316.2	1705	3	0	0	0	0	multi-exon	FALSE	canonical	3	1697	junction_1	67.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTTTAATCAGCATTTC	4826	False	NA	NA	False	AAAACA	-26	NA	25179610	25166267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25167755_25174991_25175141_25179541
transcript_55278.nic	chr17	+	5048	30	NIC	ENSMUSG00000024169.17	novel	6942	29	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	15.5658243289342	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAAAAGGCTGTAC	6856	False	NA	15	True	AATAAA	-20	NA	25235037	25318461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_25235111_25237734_25237913_25239491_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
transcript_55279.known	chr17	+	5489	30	FSM	ENSMUSG00000024169.17	ENSMUST00000024983.12	5489	30	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	11.5756314625783	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAAAAGGCTGTAC	7183	False	NA	15	True	AATAAA	-20	NA	25235364	25318461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25235879_25237734_25237913_25239491_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
transcript_5528.known	chr1	+	445	1	FSM	ENSMUSG00000078193.3	ENSMUST00000102782.4	445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5843	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	156193609	156194054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_156193600_156194100
transcript_55280.nic	chr17	+	5466	30	NIC	ENSMUSG00000024169.17	novel	5489	30	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	15.4415779815037	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAAAAGGCTGTAC	6901	False	NA	15	True	AATAAA	-20	NA	25235082	25318461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_25235574_25237734_25237913_25239491_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
transcript_55286.known	chr17	-	3530	21	FSM	ENSMUSG00000024170.16	ENSMUST00000115181.9	3530	21	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_18	13.9207578816672	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCTTCTGTGGTTCTTA	NA	False	NA	-1	True	AATAAA	-21	NA	25334941	25318543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334386
transcript_55287.known	chr17	-	3434	21	FSM	ENSMUSG00000024170.16	ENSMUST00000024987.6	3434	21	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_20	19.5787512369916	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACAGGCTGCTTCTGTG	NA	False	NA	-8	True	AATAAA	-14	NA	25334879	25318550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334413
transcript_55298.nic	chr17	-	3618	20	NIC	ENSMUSG00000024170.16	novel	3530	21	NA	NA	-15	0	intron_retention	FALSE	canonical	3	51	junction_17	12.7013424378288	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACAGGCTGCTTCTGTG	NA	False	NA	-8	True	AATAAA	-14	NA	25334956	25318550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334386
transcript_5530.known	chr1	-	8371	16	FSM	ENSMUSG00000026600.13	ENSMUST00000189661.7	8371	16	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_13	9.26258903091115	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTGTGTGTAGTGTTAT	1699	False	NA	NA	False	AATAAA	-21	NA	156301901	156252094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156294250_156294369_156301717
transcript_55308.known	chr17	-	1697	2	FSM	ENSMUSG00000024170.16	ENSMUST00000130525.2	1697	2	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGTGCCAACAGGCCAG	NA	False	NA	NA	False	NA	NA	NA	25334928	25333104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25334260_25334386
transcript_55311.nnic	chr17	+	4143	26	NNC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	36.5755328054152	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCCAGTATTTTTATT	NA	False	NA	14	True	NA	NA	NA	25352352	25381072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366378_25366445_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
transcript_55314.nnic	chr17	+	4140	25	NNC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_17	28.4428032295615	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCCAGTATTTTTATT	NA	False	NA	14	True	NA	NA	NA	25352352	25381072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375711_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
transcript_55315.known	chr17	+	4067	25	FSM	ENSMUSG00000036636.11	ENSMUST00000233633.2	4067	25	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_13	27.2258748966657	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTATTTTTATTTTGACT	NA	False	NA	20	True	NA	NA	NA	25352364	25381078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370729_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
transcript_55338.known	chr17	+	3030	2	FSM	ENSMUSG00000067722.5	ENSMUST00000088307.5	3030	2	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	0	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTATGTCTCTCTGTTA	NA	False	NA	NA	False	AATATA	-16	NA	25403527	25406636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25403615_25403693
transcript_55344.known	chr17	+	4779	15	FSM	ENSMUSG00000015127.15	ENSMUST00000039734.12	4779	15	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	11.8347464903054	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTGGATCTTTGGGC	NA	False	NA	3	True	ATTAAA	-15	NA	25407370	25453417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25407467_25408439_25408650_25418740_25418918_25420015_25420150_25424572_25424709_25427062_25427181_25428527_25428613_25429777_25429861_25432020_25432081_25437551_25437730_25447556_25447641_25448212_25448441_25449180_25449384_25449494_25449750_25450685
transcript_55349.known	chr17	-	1234	11	FSM	ENSMUSG00000035521.14	ENSMUST00000038973.7	1234	11	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	15.4275727189989	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATGGTTATGTATTATA	NA	False	NA	85	True	ATTAAA	-32	NA	25459090	25453290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
transcript_5536.known	chr1	+	2633	1	FSM	ENSMUSG00000101523.3	ENSMUST00000190422.3	2633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTGGTTTTATTTATCAA	NA	False	NA	NA	False	AATAAA	-1	NA	156351581	156354214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_156351600_156354200
transcript_5537.known	chr1	+	10151	13	FSM	ENSMUSG00000026596.14	ENSMUST00000166172.9	10151	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	3.53160335006952	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCAAGTTGTGTTTTG	NA	False	NA	29	True	AATAAA	-42	NA	156386556	156477138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_156386776_156448408_156448472_156450054_156450226_156452857_156453154_156457422_156457696_156458914_156459000_156460649_156460828_156461322_156461508_156462634_156462788_156464387_156464478_156468008_156468183_156468562_156468800_156469111
transcript_55370.nic	chr17	+	3811	6	NIC	ENSMUSG00000015127.15	novel	3414	5	NA	NA	-126	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	22.1954950384081	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTCTGGATCTTTGGG	NA	False	NA	2	True	ATTAAA	-14	NA	25441386	25453416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_25441697_25447556_25447641_25448212_25448441_25449180_25449384_25449494_25449750_25450685
transcript_55372.known	chr17	+	3414	5	FSM	ENSMUSG00000015127.15	ENSMUST00000015271.12	3414	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	29.3459963197708	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTCTGGATCTTTGGG	NA	False	NA	2	True	ATTAAA	-14	NA	25441555	25453416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25441697_25447556_25447641_25449180_25449384_25449494_25449750_25450685
transcript_55375.nnic	chr17	+	1180	6	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	166.883672059312	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4594	False	NA	28	True	AATAAA	-18	NA	25459134	25461772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_25459339_25459417_25459617_25460037_25460232_25460661_25460836_25461132_25461197_25461427
transcript_55379.known	chr17	+	1192	6	FSM	ENSMUSG00000015126.10	ENSMUST00000063574.7	1192	6	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_2	34.9685573050991	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
transcript_55386.nnic	chr17	+	972	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	185.290312752718	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_25459339_25460037_25460232_25460661_25460836_25461132_25461197_25461427
transcript_55392.known	chr17	-	1559	8	FSM	ENSMUSG00000015120.16	ENSMUST00000172618.8	1559	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4216	False	NA	NA	False	GATAAA	-15	NA	25492888	25481152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
transcript_55399.known	chr17	-	824	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	0	0	0	0	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCATTTCCGCCACTG	4596	False	NA	NA	False	NA	NA	NA	25492508	25481279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
transcript_55401.known	chr17	-	890	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGCAGCTAGTTTCTTT	3820	False	NA	NA	False	GATAAA	-19	NA	25493284	25481148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
transcript_55406.nic	chr17	-	1426	7	NIC	ENSMUSG00000015120.16	novel	1138	7	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGTTGCATTATCAT	4223	False	NA	NA	False	AATAAA	-14	NA	25492881	25480889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
transcript_55414.nic	chr17	-	1111	7	NIC	ENSMUSG00000015120.16	novel	824	7	NA	NA	7	-52	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGATGTCAGTATTTCAA	4223	False	NA	NA	False	AGTAAA	-18	NA	25492881	25481204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
transcript_55424.known	chr17	-	508	4	FSM	ENSMUSG00000015120.16	ENSMUST00000172587.8	508	4	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	2181.28896654147	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAGTCCCAGGGTAGATG	3828	False	NA	NA	False	NA	NA	NA	25493276	25487381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25487588_25488165_25488250_25488376_25488454_25493135
transcript_55426.known	chr17	-	2755	4	FSM	ENSMUSG00000015120.16	ENSMUST00000172868.8	2755	4	0	0	0	0	multi-exon	FALSE	canonical	3	4214	junction_3	351.970011348821	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTGGCTGCCAGAAGT	4263	False	NA	NA	False	NA	NA	NA	25492841	25485540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25487588_25488165_25488250_25488376_25488454_25492294
transcript_55429.known	chr17	+	1802	2	FSM	ENSMUSG00000091475.5	ENSMUST00000163493.4	1802	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCCCTTGAATGTGGT	2732	False	NA	22	True	AATAAA	-25	NA	25789331	25794017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25790076_25792959
transcript_55430.known	chr17	-	3000	3	FSM	ENSMUSG00000024176.11	ENSMUST00000025003.10	3000	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATGTTTTGAGTATTACT	7393	False	NA	NA	False	GATAAA	-41	NA	25789660	25784865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25787056_25787801_25788035_25789083
transcript_55431.known	chr17	+	1858	11	FSM	ENSMUSG00000002279.20	ENSMUST00000116641.9	1858	11	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_2	37.5467708331888	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	False	NA	107	True	NA	NA	NA	25798150	25881800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
transcript_55434.known	chr17	+	2003	10	FSM	ENSMUSG00000002279.20	ENSMUST00000141606.3	2003	10	0	0	0	0	multi-exon	TRUE	canonical	1	15	junction_2	37.2827037646145	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTCTCCCTCCACTCCCCG	NA	False	NA	NA	False	NA	NA	NA	25798058	25875453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974
transcript_55436.known	chr17	+	1424	9	FSM	ENSMUSG00000002279.20	ENSMUST00000137201.8	1424	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	39.6917812651435	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCTCTACCTATACTGT	NA	False	NA	4	True	AATAAA	-15	NA	25798160	25881697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25798354_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
transcript_55448.known	chr17	-	3214	22	FSM	ENSMUSG00000019214.15	ENSMUST00000048054.14	3214	22	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_21	100.708127696462	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5674	False	NA	NA	False	NA	NA	NA	25946393	25937899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
transcript_55449.known	chr17	-	3208	22	FSM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_21	77.5978060329916	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5683	False	NA	NA	False	NA	NA	NA	25946384	25937899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
transcript_5545.known	chr1	-	3545	6	FSM	ENSMUSG00000060519.12	ENSMUST00000156861.8	3545	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	22.5512749085279	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGATGGTTCTTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156501895	156481186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496940_156497207_156500808_156501217_156501655
transcript_5546.known	chr1	-	3285	6	FSM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	7.96492310069595	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGATGGTTCTTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156501926	156481186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496940_156497207_156501099_156501217_156501655
transcript_5551.known	chr1	-	4532	9	FSM	ENSMUSG00000033557.18	ENSMUST00000122424.8	4532	9	0	0	0	0	multi-exon	TRUE	canonical	3	105	junction_8	37.6710681425414	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCTGGTTAATCTCCC	NA	False	NA	NA	False	AATAAA	-27	NA	156546642	156506101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156509213_156513760_156513821_156514925_156515118_156518046_156518219_156526296_156526407_156529968_156530056_156533237_156533738_156544457_156544551_156546435
transcript_55511.known	chr17	-	1613	7	FSM	ENSMUSG00000019214.15	ENSMUST00000237158.2	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_6	169.684756730434	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGCTTGGCAGGGCCC	5737	False	NA	NA	False	NA	NA	NA	25946330	25943754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
transcript_55523.known	chr17	+	719	3	FSM	ENSMUSG00000025739.14	ENSMUST00000172002.8	719	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGAAGTCCCTCTCAGGC	NA	False	NA	NA	False	NA	NA	NA	25936144	25938380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25936252_25937640_25937773_25937900
transcript_55525.known	chr17	+	1745	6	FSM	ENSMUSG00000041199.4	ENSMUST00000047273.3	1745	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	16.0299719276111	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	False	NA	24	True	AATAAA	-21	NA	25946690	25950438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25946822_25947176_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_55526.known	chr17	+	1761	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237785.2	1761	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	25.198412648419	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAGAGTGACCATGAGC	NA	False	NA	18	True	AATAAA	-15	NA	25946690	25950432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25946822_25947154_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_55527.known	chr17	+	1743	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237183.2	1743	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	28.5096474899287	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	False	NA	24	True	AATAAA	-21	NA	25946643	25950438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25946822_25947225_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_55530.known	chr17	+	1531	5	FSM	ENSMUSG00000041199.4	ENSMUST00000235645.2	1531	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	24.712092181764	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCTTGAGAGTGACCAT	NA	False	NA	14	True	AATAAA	-11	NA	25946705	25950428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25946822_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_55535.known	chr17	-	2054	17	FSM	ENSMUSG00000063011.8	ENSMUST00000236137.2	2054	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	16.7330838087305	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGTCCTGTAGTGTTC	6592	False	NA	-5	True	AATAAA	-19	NA	25973351	25967589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972049_25972351_25972399_25972747_25972792_25973105_25973197_25973316
transcript_55543.nic	chr17	-	2128	16	NIC	ENSMUSG00000063011.8	novel	2165	16	NA	NA	-112	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_15	17.5494222760244	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6830	False	NA	-2	True	AATAAA	-22	NA	25973113	25967586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25972904
transcript_55544.known	chr17	-	2165	16	FSM	ENSMUSG00000063011.8	ENSMUST00000238120.2	2165	16	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_13	10.6111052937739	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6592	False	NA	-2	True	AATAAA	-22	NA	25973351	25967586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105
transcript_55548.nic	chr17	-	2585	16	NIC	ENSMUSG00000063011.8	novel	2054	17	NA	NA	-224	0	intron_retention	FALSE	canonical	3	35	junction_15	10.4690018626419	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6367	False	NA	-2	True	AATAAA	-22	NA	25973576	25967586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972399_25972747_25972792_25973105_25973197_25973316
transcript_5556.known	chr1	-	4414	8	FSM	ENSMUSG00000033557.18	ENSMUST00000086153.8	4414	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_7	39.1298205610869	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATAAAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	156546656	156506140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156509213_156513760_156513821_156514925_156515118_156518046_156518219_156526296_156526407_156529968_156530056_156533237_156533738_156546435
transcript_55562.nnic	chr17	-	2194	14	NIC	ENSMUSG00000063011.8	novel	2165	16	NA	NA	-112	0	intron_retention	FALSE	canonical	2	3	junction_13	17.5165179863711	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6830	False	NA	-2	True	AATAAA	-22	NA	25973113	25967586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972747
transcript_55583.nic	chr17	+	1882	11	NIC	ENSMUSG00000002280.12	novel	1921	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_10	76.6329563569095	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCCACTGTGTGTCTGGT	6939	False	NA	8	True	AATAAA	-20	NA	25992768	26001767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000705_26000989
transcript_55586.known	chr17	+	2555	11	FSM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_8	20.6145579627602	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTACTCAAATGACTGC	6920	False	NA	NA	False	AATAAA	-19	NA	25992749	26002306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
transcript_55591.nic	chr17	+	2774	10	NIC	ENSMUSG00000002280.12	novel	2062	11	NA	NA	-472	0	intron_retention	FALSE	canonical	3	241	junction_4	18.6368809979925	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCCACTGTGTGTCTG	6448	False	NA	6	True	AATAAA	-18	NA	25992277	26001765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_26000353_26000661_26000820_26000989
transcript_55596.known	chr17	-	1405	9	FSM	ENSMUSG00000061046.10	ENSMUST00000077938.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	8.07387763097757	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	4253	False	NA	-1	True	NA	NA	NA	26004647	26001762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
transcript_55599.known	chr17	-	1074	8	FSM	ENSMUSG00000061046.10	ENSMUST00000138759.8	1074	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	17.2496672549984	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGGTACCAGACACAC	4359	False	NA	-35	True	AATAAA	-14	NA	26004541	26001796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004401
transcript_55606.known	chr17	-	951	5	FSM	ENSMUSG00000061046.10	ENSMUST00000143248.8	951	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	8.61684396980704	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCTGCAACGAACACGTG	4360	False	NA	NA	False	NA	NA	NA	26004540	26002802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26002861_26003048_26003547_26003634_26003700_26003977_26004169_26004401
transcript_55608.known	chr17	+	261	2	FSM	ENSMUSG00000002280.12	ENSMUST00000154711.2	261	2	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACATCTTCTTCTGCCTT	6951	False	NA	NA	False	GGGGCT	-45	NA	25992780	25994199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25992862_25994019
transcript_55609.known	chr17	+	2652	1	FSM	ENSMUSG00000002280.12	ENSMUST00000236424.2	2652	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAGAAAAAGAAAGAAAA	6957	False	NA	NA	False	NA	NA	NA	25992786	25995438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_25992800_25995400
transcript_5561.known	chr1	-	2958	20	FSM	ENSMUSG00000026594.15	ENSMUST00000191605.7	2958	20	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_19	72.7811198920598	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACCTTTTCTTGTATG	NA	False	NA	-37	True	AATAAA	-32	NA	156767178	156635691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735289_156767058
transcript_55612.nic	chr17	-	5004	6	Fusion	ENSMUSG00000057411.10_ENSMUSG00000002274.14	novel	987	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	84	junction_4	68.0311693270077	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	5839	False	NA	-7	True	AATAAA	-17	NA	26016111	26009479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr17_-_26009753_26009906_26009958_26010319_26014266_26014347_26014408_26015214_26015616_26015838
transcript_55613.known	chr17	-	1321	5	FSM	ENSMUSG00000057411.10	ENSMUST00000072735.9	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7185796180472	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTGTTTGTTCCAGGAA	9977	False	NA	-2	True	AATAAA	-22	NA	26011772	26009474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011026
transcript_55614.known	chr17	-	627	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236683.2	627	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	82.996987897152	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8378	False	NA	-7	True	AATAAA	-17	NA	26011361	26009479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011304
transcript_55616.known	chr17	-	987	5	FSM	ENSMUSG00000002274.14	ENSMUST00000002344.7	987	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	40.1434926233381	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCTTCTGGAGATGGGG	5840	False	NA	NA	False	NA	NA	NA	26016110	26013922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26014266_26014347_26014408_26015214_26015616_26015838_26015951_26016039
transcript_55618.known	chr17	-	1198	4	FSM	ENSMUSG00000002274.14	ENSMUST00000235294.2	1198	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	43.8482230730809	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGGGTGTGGCTCGGAT	5921	False	NA	-78	True	NA	NA	NA	26016029	26013874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26014266_26014347_26014408_26015059_26015616_26015838
transcript_55619.known	chr17	-	698	4	FSM	ENSMUSG00000002274.14	ENSMUST00000235925.2	698	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	38.3173879879908	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGAGCTGGTAGAATA	6008	False	NA	-44	True	NA	NA	NA	26015942	26013840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26014266_26014347_26014408_26015214_26015324_26015838
transcript_5562.known	chr1	-	2947	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCTTGTATGACTTCA	NA	False	NA	-31	True	AATAAA	-38	NA	156767101	156635685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_55620.known	chr17	-	2751	4	FSM	ENSMUSG00000002274.14	ENSMUST00000165838.9	2751	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	5.71547606649408	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGTTTTGGAGGGTAACA	5893	False	NA	NA	False	AATACA	-42	NA	26016057	26012194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26014266_26014347_26014408_26015214_26015616_26015838
transcript_55622.nic	chr17	-	2008	3	NIC	ENSMUSG00000002274.14	novel	1198	4	NA	NA	-1	0	intron_retention	FALSE	canonical	3	95	junction_2	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTAGTCATGGTCTT	5839	False	NA	-2	True	NA	NA	NA	26016111	26013798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_26014266_26014347_26015616_26015838
transcript_55625.known	chr17	-	1267	4	FSM	ENSMUSG00000057411.10	ENSMUST00000235327.2	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.4449494897321	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8392	False	NA	-7	True	AATAAA	-17	NA	26011347	26009479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545
transcript_55626.known	chr17	-	641	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236161.2	641	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	93.5050132345854	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATCCTGACTTTTGTTT	8688	False	NA	-12	True	AATAAA	-12	NA	26011051	26009484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26010975
transcript_55627.known	chr17	-	1528	2	FSM	ENSMUSG00000057411.10	ENSMUST00000237703.2	1528	2	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8370	False	NA	-7	True	AATAAA	-17	NA	26011369	26009479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26009958_26010319
transcript_55628.known	chr17	+	3489	6	FSM	ENSMUSG00000025738.9	ENSMUST00000045692.9	3489	6	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_5	4.22374241638857	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACAAGTGGGTTATT	NA	False	NA	-3	True	ATTAAA	-9	NA	26028058	26040229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26028361_26035390_26036038_26036653_26037163_26037471_26037557_26037869_26037934_26038347
transcript_55632.known	chr17	+	3099	9	FSM	ENSMUSG00000025737.6	ENSMUST00000026833.6	3099	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	16.5529453572468	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTGTCACTTTCATTG	NA	False	NA	18	True	AATAAA	-20	NA	26042600	26047704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
transcript_55637.known	chr17	+	3139	8	FSM	ENSMUSG00000025737.6	ENSMUST00000160349.2	3139	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	15.8449116277055	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTGGCCACTTGTCA	NA	False	NA	9	True	AATAAA	-11	NA	26042622	26047695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046507_26046626_26046968_26047127_26047313_26047388
transcript_55638.nic	chr17	+	3205	8	NIC	ENSMUSG00000025737.6	novel	3099	9	NA	NA	5	0	intron_retention	FALSE	canonical	3	91	junction_4	15.4166620702328	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTGGCCACTTGTCA	NA	False	NA	9	True	AATAAA	-11	NA	26042605	26047695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_26043661_26044627_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
transcript_5564.known	chr1	-	4398	20	FSM	ENSMUSG00000026594.15	ENSMUST00000192343.6	4398	20	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_15	76.9001222942088	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCGACTGGGATATTGTA	NA	False	NA	-2	True	ATTAAA	-18	NA	156767169	156634329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156720477_156720583_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_55642.nic	chr17	+	3276	7	NIC	ENSMUSG00000025737.6	novel	3139	8	NA	NA	5	0	intron_retention	FALSE	canonical	3	100	junction_2	13.3499895963339	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTGGCCACTTGTCA	NA	False	NA	9	True	AATAAA	-11	NA	26042605	26047695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_26043661_26044627_26045599_26046008_26046128_26046208_26046507_26046626_26046968_26047127_26047313_26047388
transcript_55649.known	chr17	-	1803	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	0	0	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAGAAAAAAAAAATTT	6345	False	NA	NA	False	AATACA	-10	NA	26052335	26049478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
transcript_55651.known	chr17	-	1408	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236565.2	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.0167318372002	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050936_26051019_26051219_26051665
transcript_55653.known	chr17	-	1498	5	FSM	ENSMUSG00000039615.10	ENSMUST00000235484.2	1498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.4115371143218	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26049985_26050075_26050606_26050769_26050936_26051019_26051219_26051665
transcript_55656.known	chr17	-	1341	7	FSM	ENSMUSG00000039615.10	ENSMUST00000237186.2	1341	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	575.587139845528	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTTGCCAGTTGCCTG	6302	False	NA	1	True	AATAAA	-35	NA	26052378	26049589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26052059
transcript_55658.known	chr17	-	5991	41	FSM	ENSMUSG00000073434.13	ENSMUST00000079461.15	5991	41	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_38	18.7159691173073	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTTTATTGTCCCAT	9834	False	NA	NA	False	AATAAA	-23	NA	26080449	26063744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26064200_26064348_26064434_26064552_26064673_26064744_26064889_26064972_26065104_26065213_26065389_26065497_26065621_26066773_26066946_26067300_26067413_26067501_26067671_26067946_26068138_26068227_26068388_26068536_26068659_26068841_26068945_26069391_26069490_26069720_26069913_26070369_26070502_26070691_26070733_26070805_26070922_26071129_26071259_26071371_26071534_26071799_26071931_26072695_26072827_26073011_26073152_26073503_26073740_26074091_26074209_26074274_26074406_26074481_26074644_26074732_26074852_26075935_26075994_26076072_26076219_26076298_26076410_26077709_26077779_26078073_26078293_26078362_26078467_26078831_26078900_26078992_26079108_26079345_26079517_26079628_26079792_26079880_26080058_26080158
transcript_55659.known	chr17	-	5962	41	FSM	ENSMUSG00000073434.13	ENSMUST00000176923.9	5962	41	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_38	17.4845646214025	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGTTTTATTGTCCCA	9808	False	NA	NA	False	AATAAA	-22	NA	26080475	26063745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26064200_26064348_26064434_26064552_26064673_26064744_26064889_26064972_26065104_26065213_26065389_26065497_26065621_26066773_26066946_26067300_26067413_26067501_26067671_26067946_26068138_26068227_26068388_26068536_26068659_26068841_26068945_26069391_26069490_26069720_26069913_26070369_26070502_26070691_26070733_26070805_26070922_26071129_26071259_26071371_26071534_26071799_26071931_26072695_26072827_26073011_26073152_26073503_26073740_26074091_26074209_26074274_26074406_26074481_26074644_26074732_26074852_26075935_26075994_26076072_26076219_26076298_26076410_26077709_26077779_26078073_26078293_26078362_26078467_26078831_26078900_26078992_26079108_26079345_26079517_26079682_26079792_26079880_26080058_26080158
transcript_55660.known	chr17	-	5946	40	FSM	ENSMUSG00000073434.13	ENSMUST00000177170.8	5946	40	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_38	17.2815567151329	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTTTATTGTCCCAT	9926	False	NA	NA	False	AATAAA	-23	NA	26080357	26063744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26064200_26064348_26064434_26064552_26064673_26064744_26064889_26064972_26065104_26065213_26065389_26065497_26065621_26066773_26066946_26067300_26067413_26067501_26067671_26067946_26068138_26068227_26068388_26068536_26068659_26068841_26068945_26069391_26069490_26069720_26069913_26070369_26070502_26070691_26070733_26070805_26070922_26071129_26071259_26071371_26071534_26071799_26071931_26072695_26072827_26073011_26073152_26073503_26073740_26074091_26074209_26074274_26074406_26074481_26074644_26074732_26074852_26075935_26075994_26076072_26076219_26076298_26076410_26077709_26077779_26078073_26078293_26078362_26078467_26078831_26078900_26078992_26079108_26079345_26079517_26079682_26079792_26079880
transcript_55665.known	chr17	-	3189	19	FSM	ENSMUSG00000025733.18	ENSMUST00000043897.16	3189	19	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_18	11.3871272350258	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGACTGCTGTTTTTGTGT	5687	False	NA	0	True	NA	NA	NA	26063825	26057430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26058469_26058662_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26059726_26059809_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26060830_26060963_26061066_26061153_26061263_26061339_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063288_26063373
transcript_55699.known	chr17	-	945	6	FSM	ENSMUSG00000025732.7	ENSMUST00000237080.2	945	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	129.343882731268	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7792	False	NA	-4	True	AATAAA	-15	NA	26087708	26082671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26084508_26084642_26087387_26087518_26087598
transcript_557.known	chr1	-	741	3	FSM	ENSMUSG00000025930.7	ENSMUST00000190719.2	741	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTCCAGGTGCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	14825577	14823969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_14824550_14824729_14824767_14825453
transcript_55702.known	chr17	-	842	5	FSM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	22.6770809408971	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7762	False	NA	-4	True	AATAAA	-15	NA	26087738	26082671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387_26087518_26087598
transcript_55703.nic	chr17	-	911	5	NIC	ENSMUSG00000025732.7	novel	842	5	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	117.099049953448	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCGGGTGTTGGTGATT	7740	False	NA	-5	True	AATAAA	-14	NA	26087760	26082672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_26083014_26083176_26083327_26083567_26083696_26087387_26087518_26087598
transcript_55704.known	chr17	-	738	5	FSM	ENSMUSG00000025732.7	ENSMUST00000235806.2	738	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	120.520485810504	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7792	False	NA	-4	True	AATAAA	-15	NA	26087708	26082671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26082940_26083224_26083327_26083567_26083696_26087387_26087518_26087598
transcript_55705.known	chr17	+	1243	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_5	67.7542618585724	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	6768	False	NA	39	True	AATAAA	-40	NA	26094047	26096143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
transcript_55706.known	chr17	+	1026	5	FSM	ENSMUSG00000025731.17	ENSMUST00000169308.8	1026	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	48.8287824955732	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	7195	False	NA	39	True	AATAAA	-40	NA	26094474	26096143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634
transcript_55712.known	chr17	+	891	4	FSM	ENSMUSG00000025731.17	ENSMUST00000110456.3	891	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	203.922098415601	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTGCTTGCTGGGAAT	7158	False	NA	30	True	AATAAA	-31	NA	26094437	26096134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26094701_26095193_26095254_26095468_26095537_26095634
transcript_55717.known	chr17	-	3233	12	FSM	ENSMUSG00000025728.17	ENSMUST00000097368.10	3233	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	110.581782308445	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACCAGCTTGGGTGTCCT	NA	False	NA	-6	True	AATAAA	-17	NA	26160909	26145401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153067_26153248_26153731_26153853_26153976_26154109_26155737_26156437_26160788
transcript_55718.known	chr17	-	3173	11	FSM	ENSMUSG00000025728.17	ENSMUST00000026823.16	3173	11	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_4	23.9309423132479	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGGTGTCCTGCTCGTC	NA	False	NA	1	True	AATAAA	-24	NA	26161022	26145394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
transcript_55728.nnic	chr17	-	2675	8	NNC	ENSMUSG00000025730.15	novel	2466	7	NA	NA	-72	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	94.949180822035	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTTGTGTCTGGCTTCA	NA	False	NA	-4	True	AGTAAA	-14	NA	26138773	26101090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26126803_26126931_26138338_26138524_26138625
transcript_5573.known	chr1	-	4237	19	FSM	ENSMUSG00000026594.15	ENSMUST00000027886.14	4237	19	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_5	32.038605185342	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCGACTGGGATATTGTA	NA	False	NA	-2	True	ATTAAA	-18	NA	156767113	156634329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_55731.known	chr17	-	954	7	FSM	ENSMUSG00000025730.15	ENSMUST00000167018.8	954	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_6	27.4104602904317	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCTCCTAGCGGGACACA	NA	False	NA	NA	False	NA	NA	NA	26138701	26102612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138524_26138625
transcript_55737.known	chr17	+	372	1	FSM	ENSMUSG00000057580.5	ENSMUST00000170379.2	372	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCCCCACCACCACCAC	4032	False	NA	NA	False	AAAAAG	-39	NA	26120829	26121201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26120800_26121200
transcript_55738.known	chr17	-	2506	6	FSM	ENSMUSG00000025730.15	ENSMUST00000167626.8	2506	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	13.251415018782	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTGTCTGGCTTCATCT	NA	False	NA	-1	True	AGTAAA	-17	NA	26138626	26101087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338
transcript_55739.known	chr17	-	2987	11	FSM	ENSMUSG00000025728.17	ENSMUST00000208043.2	2987	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.5955081549842	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	-5	True	AATAAA	-18	NA	26161797	26145400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26161743
transcript_55740.known	chr17	-	1103	2	FSM	ENSMUSG00000025728.17	ENSMUST00000124032.2	1103	2	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATTACAAATAG	NA	False	NA	NA	False	AAGAAA	-33	NA	26160903	26155448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26156437_26160788
transcript_55742.known	chr17	-	3520	12	FSM	ENSMUSG00000037326.11	ENSMUST00000041641.9	3520	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	28.2921593554069	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGTTCCCTAGGGCAAG	1838	False	NA	NA	False	NA	NA	NA	26204654	26178529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26178708_26178780_26178960_26179038_26179206_26179310_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
transcript_55745.known	chr17	-	5216	12	FSM	ENSMUSG00000037326.11	ENSMUST00000212520.2	5216	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	31.7674920904847	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAGCTTGCATTCTGTT	1722	False	NA	-12	True	AATAAA	-15	NA	26204770	26177343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26178708_26178780_26178960_26179038_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26192064_26192354_26204444
transcript_55751.nic	chr17	-	4950	11	NIC	ENSMUSG00000037326.11	novel	5216	12	NA	NA	-20	0	intron_retention	FALSE	canonical	0	0	junction_4	23.9282260103001	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTTGCATTCTGTTGTC	1702	False	NA	-9	True	AATAAA	-18	NA	26204790	26177340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_26178708_26178780_26178960_26179038_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
transcript_55753.known	chr17	-	4536	11	FSM	ENSMUSG00000037326.11	ENSMUST00000212789.2	4536	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	31.9751465985693	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGCTTGCATTCTGTTG	1838	False	NA	-11	True	AATAAA	-16	NA	26204654	26177342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26178704_26178780_26178960_26179310_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
transcript_55758.known	chr17	-	4922	10	FSM	ENSMUSG00000037326.11	ENSMUST00000212735.2	4922	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	25.1793566240283	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGCATTCTGTTGTCACC	1812	False	NA	-6	True	AATAAA	-21	NA	26204680	26177337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26178708_26178780_26179538_26179623_26179786_26180693_26180847_26180927_26181054_26181644_26181869_26181935_26182120_26182220_26182430_26183000_26184502_26204444
transcript_55766.nic	chr17	-	753	2	ISM	ENSMUSG00000037326.11	ENSMUST00000041641.9	3520	12	-136	5565	-20	-2300	5prime_fragment	FALSE	canonical	3	80	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAAGAGGAGAAGAA	1702	False	NA	NA	False	NA	NA	NA	26204790	26184094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_26184502_26204444
transcript_55767.known	chr17	-	5383	15	FSM	ENSMUSG00000037098.19	ENSMUST00000122103.9	5383	15	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_10	23.7715530559927	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGCTTCTTTCTCCACAG	NA	False	NA	0	True	ATTAAA	-19	NA	26288519	26208009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26209860_26209949_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159_26213301_26216902_26217007_26223524_26223619_26227828_26227865_26230970_26231106_26232747_26232892_26234917_26235130_26243348_26243441_26255562_26255657_26286555
transcript_55768.known	chr17	-	5249	14	FSM	ENSMUSG00000037098.19	ENSMUST00000120691.9	5249	14	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_9	17.5610515785467	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACGGAGCCGGCTTCTT	NA	False	NA	-9	True	ATTAAA	-10	NA	26288529	26208018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26209860_26209949_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159_26213301_26216902_26217007_26223524_26223619_26227828_26227865_26232747_26232892_26234917_26235130_26243348_26243441_26255562_26255657_26286555
transcript_55773.nic	chr17	-	2939	5	ISM	ENSMUSG00000037098.19	ENSMUST00000120691.9	5249	14	-2	24308	-2	-9702	5prime_fragment	FALSE	canonical	3	82	junction_3	16.7984374273323	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCATAAGCCAGGCCATA	NA	False	NA	NA	False	NA	NA	NA	26288531	26232326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_26232892_26234917_26235130_26243348_26243441_26255562_26255657_26286555
transcript_55785.nnic	chr17	-	2086	8	NIC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_7	60.1518486661814	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	-23	True	NA	NA	NA	26309261	26300203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26308937
transcript_55788.known	chr17	-	2224	9	FSM	ENSMUSG00000036775.14	ENSMUST00000040907.8	2224	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	27.3849867628232	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATAGTGCTTGTGTTTCCT	NA	False	NA	-4	True	NA	NA	NA	26309311	26300184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
transcript_55789.known	chr17	-	926	6	FSM	ENSMUSG00000024177.10	ENSMUST00000236547.2	926	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	147.011019995101	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26312832_26312935_26313110_26313245_26314338
transcript_55790.known	chr17	-	638	5	FSM	ENSMUSG00000024177.10	ENSMUST00000236128.2	638	5	0	0	0	0	multi-exon	TRUE	canonical	1	6	junction_3	129.762041830421	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACTCCCTACTCCCGCT	NA	False	NA	-114	True	NA	NA	NA	26314463	26310911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26313110_26313245_26314338
transcript_55792.known	chr17	-	1006	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26314576	26310707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
transcript_55795.nic	chr17	-	1035	4	NIC	ENSMUSG00000024177.10	novel	1006	5	NA	NA	-19	0	intron_retention	FALSE	canonical	3	304	junction_1	22.7596133534821	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATGGTCTACTTACTA	NA	False	NA	-6	True	ATTAAA	-16	NA	26314482	26310713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_26311127_26312590_26312935_26313110_26313245_26314338
transcript_55797.known	chr17	-	1176	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236112.2	1176	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	7.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATGGTCTACTTACTA	NA	False	NA	-6	True	ATTAAA	-16	NA	26314447	26310713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26311127_26312590_26313245_26314338
transcript_558.known	chr1	-	1741	2	FSM	ENSMUSG00000025930.7	ENSMUST00000027062.7	1741	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATTGTAAAAGTTCTT	NA	False	NA	4	True	AATAAA	-21	NA	14826214	14823569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_14824550_14825453
transcript_55800.known	chr17	-	995	2	FSM	ENSMUSG00000024177.10	ENSMUST00000150280.3	995	2	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTGAGAAGTGGGAATCT	NA	False	NA	NA	False	NA	NA	NA	26314459	26312370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26313245_26314338
transcript_55809.known	chr17	+	3464	13	FSM	ENSMUSG00000024180.15	ENSMUST00000025010.14	3464	13	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_7	42.026446699932	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGTCTTTTTTTTTTT	NA	False	NA	20	True	NA	NA	NA	26332289	26342228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26332542_26335732_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339512_26339660_26340513_26340631_26340911
transcript_55813.nnic	chr17	+	2575	13	NNC	ENSMUSG00000024180.15	novel	3464	13	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	117.427519015869	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGGCTTCTTTCTCCAG	NA	False	NA	12	True	AATAAA	-13	NA	26332250	26341321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_26332542_26335732_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339533_26339660_26340513_26340631_26340911
transcript_55814.nnic	chr17	+	3467	13	NNC	ENSMUSG00000024180.15	novel	3464	13	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	117.427519015869	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGTCTTTTTTTTTTT	NA	False	NA	20	True	NA	NA	NA	26332265	26342228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_26332542_26335732_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339533_26339660_26340513_26340631_26340911
transcript_5582.known	chr1	-	2229	18	FSM	ENSMUSG00000026594.15	ENSMUST00000185198.7	2229	18	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	58.0582573427307	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATATATAGAAACATTCG	NA	False	NA	NA	False	AATAAA	-12	NA	156767196	156640650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_55833.known	chr17	+	2427	12	FSM	ENSMUSG00000024180.15	ENSMUST00000235821.2	2427	12	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_10	116.537015720576	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGGCTTCTTTCTCCAG	NA	False	NA	12	True	AATAAA	-13	NA	26332272	26341321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26332542_26335732_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26340513_26340631_26340911
transcript_55851.known	chr17	+	1046	5	FSM	ENSMUSG00000024181.10	ENSMUST00000237950.2	1046	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342493	26345587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26342824_26343529_26343693_26344242_26344366_26344451_26344539_26345244
transcript_55852.known	chr17	+	1002	5	FSM	ENSMUSG00000024181.10	ENSMUST00000127647.3	1002	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	671.536670629386	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342517	26345587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344473_26344539_26345244
transcript_55853.known	chr17	+	1134	4	FSM	ENSMUSG00000024181.10	ENSMUST00000236040.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	672.139039848817	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342493	26345587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344539_26345244
transcript_5586.known	chr1	-	2498	15	FSM	ENSMUSG00000026594.15	ENSMUST00000190648.7	2498	15	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	35.9233878680501	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACATTGAG	NA	False	NA	NA	False	AAAAAG	-5	NA	156767163	156646446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_55868.known	chr17	-	1032	6	FSM	ENSMUSG00000073433.12	ENSMUST00000025019.9	1032	6	0	0	0	0	multi-exon	TRUE	canonical	3	81	junction_2	6.72309452558864	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTGCTGCTTCTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	26420324	26418156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26420044
transcript_55874.known	chr17	-	2833	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234687.2	2833	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_12	40.5798253103956	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	1928	False	NA	-17	True	AATAAA	-31	NA	26463188	26431683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462963
transcript_55879.known	chr17	-	2749	12	FSM	ENSMUSG00000024187.16	ENSMUST00000234175.2	2749	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_11	62.3582027847616	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	1900	False	NA	-17	True	AATAAA	-31	NA	26463216	26431683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462963
transcript_55880.known	chr17	-	2629	12	FSM	ENSMUSG00000024187.16	ENSMUST00000118487.8	2629	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	57.0232662389834	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCCAGCGTGAGCCTGC	2001	False	NA	-20	True	AATAAA	-28	NA	26463115	26431686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462979
transcript_55888.nic	chr17	+	5047	11	NIC	ENSMUSG00000024188.17	novel	4934	10	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	95	junction_2	204.37027670383	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGTCAGGTGTTTTGT	NA	False	NA	17	True	NA	NA	NA	26471882	26504478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
transcript_55890.known	chr17	+	4934	10	FSM	ENSMUSG00000024188.17	ENSMUST00000114976.9	4934	10	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_9	132.110877487879	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGTCAGGTGTTTTGT	NA	False	NA	17	True	NA	NA	NA	26471924	26504478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
transcript_55894.known	chr17	+	1672	10	FSM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	196.74976273379	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTACATTAGTGTATT	NA	False	NA	17	True	ATTAAA	-29	NA	26471972	26499697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
transcript_559.known	chr1	-	4263	27	FSM	ENSMUSG00000032769.6	ENSMUST00000041447.5	4263	27	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.09712398157163	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTTGGGGACAGCAGTA	NA	False	NA	NA	False	AATAAA	-20	NA	14989086	14942871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_14943953_14944587_14944686_14946072_14946184_14950422_14950492_14951820_14952004_14952335_14952466_14954333_14954504_14955973_14956064_14957110_14957277_14957818_14957890_14959617_14959717_14960618_14960679_14961528_14961623_14963406_14963574_14966715_14966831_14968232_14968398_14968479_14968650_14969570_14969672_14970288_14970389_14972085_14972135_14973369_14973507_14974370_14974517_14974676_14974786_14976146_14976255_14980953_14981130_14982583_14982744_14988948
transcript_55900.known	chr17	+	1700	9	FSM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	74.6521098161331	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATATGTTTACATTAGTG	NA	False	NA	13	True	ATTAAA	-25	NA	26471869	26499693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
transcript_55901.known	chr17	+	2670	9	FSM	ENSMUSG00000024188.17	ENSMUST00000133032.8	2670	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	146.829354609356	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	14	True	ATTAAA	-26	NA	26471957	26499694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
transcript_55905.nic	chr17	+	841	7	ISM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	13	3142	13	-57	5prime_fragment	FALSE	canonical	3	393	junction_1	74.7947190649179	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGATCGATTGAGGAGAA	NA	False	NA	-8	True	AAAAAG	-4	NA	26471882	26496551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519
transcript_55912.nic	chr17	+	724	5	ISM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	-88	13370	-88	956	5prime_fragment	FALSE	canonical	3	393	junction_1	77.0292152368178	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCAGAGGTTAGTAGTTA	NA	False	NA	NA	False	AAGAAA	-4	NA	26471781	26486323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188
transcript_55935.known	chr17	+	2754	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_9	34.0783411176855	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGCTGTGACTCTGC	NA	False	NA	11	True	ATTAAA	-15	NA	26780462	26875905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
transcript_5594.nic	chr1	-	404	4	ISM	ENSMUSG00000026594.15	ENSMUST00000190648.7	2498	15	-15	81721	0	0	5prime_fragment	FALSE	canonical	3	272	junction_1	11.7851130197758	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGCCAGATGTAAGTAG	NA	False	NA	NA	False	TTTAAA	-4	NA	156767178	156728167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_156728207_156729355_156729461_156735208_156735349_156767058
transcript_55949.known	chr17	-	1990	4	FSM	ENSMUSG00000024190.8	ENSMUST00000025025.7	1990	4	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_2	22.365648262955	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCGTGCTTTCTTTGGT	NA	False	NA	0	True	AATAAA	-20	NA	26727493	26724563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26725625_26725958_26726179_26726547_26726694_26726930
transcript_5595.known	chr1	-	587	3	FSM	ENSMUSG00000026594.15	ENSMUST00000189208.2	587	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_2	8	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTTTAACTTTGTACT	NA	False	NA	-6	True	AATAAA	-16	NA	156641138	156636399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156636764_156639014_156639107_156641007
transcript_55951.known	chr17	-	2313	3	FSM	ENSMUSG00000024190.8	ENSMUST00000126178.2	2313	3	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_2	17.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCCGTGCTTTCTTTGG	NA	False	NA	-1	True	AATAAA	-19	NA	26727448	26724564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_26725625_26725958_26726694_26726930
transcript_55954.known	chr17	+	1353	11	FSM	ENSMUSG00000001576.16	ENSMUST00000167070.3	1353	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.479026334427	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCACGTGTCTCTTTCCC	NA	False	NA	12	True	GATAAA	-14	NA	26820298	26874324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26820496_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26873800_26873928_26874040
transcript_55956.known	chr17	+	823	4	FSM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	173.829418300432	792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895343	26918621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26895553_26901651_26901700_26914328_26914459_26918185
transcript_55959.known	chr17	+	2812	3	FSM	ENSMUSG00000015575.16	ENSMUST00000167352.2	2812	3	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_2	17.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGCT	NA	False	NA	NA	False	ATTAAA	-45	NA	26895385	26916925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_26895553_26901651_26901700_26914328
transcript_5596.known	chr1	-	4013	18	FSM	ENSMUSG00000070565.12	ENSMUST00000132699.8	4013	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	3.69512912342104	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTTCCCAGTGTCTC	5027	False	NA	NA	False	AAGAAA	-43	NA	157239504	156968103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156968446_156973759_156973848_156975199_156975403_156977342_156977478_156984475_156985338_156986228_156986408_156988694_156988897_156991272_156991510_156992176_156992322_157001712_157001858_157003232_157003788_157005215_157005315_157006668_157006823_157020316_157020427_157057608_157057716_157114300_157114425_157126706_157126835_157239306
transcript_55960.nic	chr17	+	1957	6	ISM	ENSMUSG00000048249.15	ENSMUST00000062519.14	7462	9	-66	16716	-66	0	5prime_fragment	FALSE	canonical	3	21	junction_1	5.0438080851674	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGGAAAGAAAAAAATAAGC	1214	False	NA	NA	False	NA	NA	NA	26934557	26978893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_26934749_26955762_26955958_26958516_26958643_26961015_26962106_26976778_26976974_26978733
transcript_55963.known	chr17	+	1087	7	FSM	ENSMUSG00000024191.16	ENSMUST00000134344.8	1087	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	44.5374374356376	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAGTGGTAAATGCTTAA	2049	False	NA	14	True	AATAAA	-14	NA	27000094	27011494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27008893_27008939_27009899_27010019_27010914
transcript_55966.known	chr17	+	1139	7	FSM	ENSMUSG00000024191.16	ENSMUST00000126505.3	1139	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	45.097733374922	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	2007	False	NA	15	True	AATAAA	-15	NA	27000052	27011495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27000151_27001551_27001606_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
transcript_55967.known	chr17	+	1098	6	FSM	ENSMUSG00000024191.16	ENSMUST00000015725.16	1098	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	9.09945053286186	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	1994	False	NA	15	True	AATAAA	-15	NA	27000039	27011495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
transcript_55968.known	chr17	+	818	5	FSM	ENSMUSG00000024191.16	ENSMUST00000137989.2	818	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	37.8615900352851	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCAGAGGCCTGAGC	2086	False	NA	-81	True	NA	NA	NA	27000131	27011399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27000151_27002418_27002512_27008668_27008771_27009899_27010019_27010914
transcript_55969.known	chr17	+	3443	2	FSM	ENSMUSG00000024191.16	ENSMUST00000135899.2	3443	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	2019	False	NA	NA	False	NA	NA	NA	27000064	27004908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27000151_27001551
transcript_5597.known	chr1	-	10047	18	FSM	ENSMUSG00000070565.12	ENSMUST00000078308.13	10047	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	3.97135068932194	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGCTACTATCTTTTACA	4366	False	NA	4	True	AATAAA	-28	NA	157240165	156962751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_156968446_156973759_156973848_156975199_156975403_156977342_156977478_156984475_156985338_156986228_156986429_156988694_156988897_156991272_156991510_156992176_156992322_157001712_157001858_157003232_157003788_157005215_157005315_157006668_157006823_157020316_157020427_157057608_157057716_157114300_157114425_157126706_157126835_157239306
transcript_55970.known	chr17	+	2584	2	FSM	ENSMUSG00000024191.16	ENSMUST00000128461.2	2584	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	2010	False	NA	NA	False	NA	NA	NA	27000055	27004907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27000151_27002418
transcript_55973.known	chr17	+	2094	15	FSM	ENSMUSG00000024193.9	ENSMUST00000237412.2	2094	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	7.18558647997674	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGCATGAGTCATTTTGA	NA	False	NA	5	True	AATAAA	-15	NA	27152433	27156865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222_27154372_27154513_27154610_27154723_27154793_27154892_27155017_27155097_27155166_27155260_27155366_27155485_27155655_27155744_27155840_27156030_27156109_27156253
transcript_55974.known	chr17	+	2526	14	FSM	ENSMUSG00000024193.9	ENSMUST00000237189.2	2526	14	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_1	5.73992557113158	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGGCATGAGTCATTTT	NA	False	NA	3	True	AATAAA	-13	NA	27152122	27156863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27152509_27153167_27153343_27153427_27153510_27153604_27153701_27154027_27154129_27154222_27154372_27154513_27154610_27154723_27154793_27154892_27155017_27155097_27155166_27155260_27155655_27155744_27155840_27156027_27156109_27156253
transcript_55980.known	chr17	+	2631	11	FSM	ENSMUSG00000024301.11	ENSMUST00000078961.6	2631	11	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	121.140785865042	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATTGTGATGTGTTTG	NA	False	NA	8	True	AATAAA	-20	NA	27136064	27151557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27136260_27139770_27139906_27139993_27140094_27140780_27140835_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
transcript_56.known	ERCC-00163	+	527	1	FSM	ERCC-00163A	DQ668359	527	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00163_+_0_500
transcript_56000.known	chr17	-	741	7	FSM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_6	250.570959122472	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9252	False	NA	-17	True	AATAAA	-18	NA	27158543	27156945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
transcript_56003.nic	chr17	-	717	6	ISM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	102	4	-3	0	intron_retention	FALSE	canonical	3	511	junction_5	169.834507683215	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9354	False	NA	-21	True	AATAAA	-14	NA	27158441	27156949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290
transcript_56004.known	chr17	-	662	6	FSM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_5	278.895392575783	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9278	False	NA	-18	True	AATAAA	-17	NA	27158517	27156946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158424
transcript_56005.known	chr17	-	622	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236623.2	622	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	366.074855733086	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGGTCACAGAATCGGT	9430	False	NA	NA	False	NA	NA	NA	27158365	27157071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158170_27158290
transcript_56006.known	chr17	-	937	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236326.2	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_5	250.477144665936	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9276	False	NA	-21	True	AATAAA	-14	NA	27158519	27156949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158343_27158424
transcript_56007.known	chr17	-	719	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236888.2	719	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	368.320838400436	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9387	False	NA	-18	True	AATAAA	-17	NA	27158408	27156946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158290
transcript_56010.nic	chr17	-	799	6	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	300	junction_5	273.070979783645	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9299	False	NA	-21	True	AATAAA	-14	NA	27158496	27156949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290_27158343_27158424
transcript_56014.known	chr17	-	785	5	FSM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	0	0	0	0	multi-exon	FALSE	canonical	3	511	junction_4	189.078026221981	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9398	False	NA	-18	True	AATAAA	-17	NA	27158397	27156946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290
transcript_5602.nic	chr1	-	1847	8	ISM	ENSMUSG00000070565.12	ENSMUST00000132699.8	4013	18	-688	35445	-27	0	5prime_fragment	FALSE	canonical	2	7	junction_1	2.84999104903714	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGACAAGAATAATTATGTAG	4339	False	NA	NA	False	AAAAAG	-9	NA	157240192	157003548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_157003788_157005215_157005315_157006668_157006823_157020316_157020427_157057608_157057716_157114300_157114425_157126706_157126835_157239306
transcript_56023.known	chr17	-	1130	4	FSM	ENSMUSG00000024194.17	ENSMUST00000235442.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_3	309.969174094601	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9300	False	NA	-17	True	AATAAA	-18	NA	27158495	27156945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27157151_27157391_27157761_27157857_27158343_27158424
transcript_56024.known	chr17	+	819	3	FSM	ENSMUSG00000024301.11	ENSMUST00000236476.2	819	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	42	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	27136064	27140482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27136260_27139770_27139906_27139993
transcript_56026.nnic	chr17	+	2416	10	NNC	ENSMUSG00000048731.16	novel	1138	7	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	17.870591056016	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGCTGTCTGTCCC	NA	False	NA	18	True	AATAAA	-19	NA	27236966	27255351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_27237145_27241224_27241315_27242102_27242178_27244310_27244434_27247806_27248921_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
transcript_56030.nic	chr17	+	2341	9	NIC	ENSMUSG00000048731.16	novel	1138	7	NA	NA	0	0	intron_retention	FALSE	canonical	2	3	junction_2	17.8321163914999	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGCTGTCTGTCCC	NA	False	NA	18	True	AATAAA	-19	NA	27236966	27255351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_27237145_27241224_27241315_27244310_27244434_27247806_27248921_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
transcript_56034.known	chr17	+	1138	7	FSM	ENSMUSG00000048731.16	ENSMUST00000122106.9	1138	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	8.62972897733308	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGGCTGTCTGTCCCC	NA	False	NA	19	True	AATAAA	-20	NA	27236966	27255352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27237145_27244310_27244434_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
transcript_56036.known	chr17	-	1958	6	FSM	ENSMUSG00000057789.15	ENSMUST00000237411.2	1958	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	53.687987483235	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCGCCTGGCATCTTTA	NA	False	NA	-2	True	AATAAA	-18	NA	27247561	27238785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241847_27244766_27244868_27247384
transcript_56037.known	chr17	+	2796	2	FSM	ENSMUSG00000079605.6	ENSMUST00000120016.3	2796	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAGACTGGCTTGAGTGA	NA	False	NA	16	True	AATAAA	-24	NA	27192140	27195177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27192289_27192529
transcript_56038.known	chr17	+	451	2	FSM	ENSMUSG00000048731.16	ENSMUST00000142141.3	451	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGTAGCGCCGGTTAATA	NA	False	NA	22	True	AGTAAA	-14	NA	27236960	27241491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27237145_27241224
transcript_56039.nic	chr17	+	2390	16	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	-4	27038	-4	-12164	5prime_fragment	FALSE	canonical	3	88	junction_10	11.3576210341583	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCATGGTGTATCGCTTCC	NA	False	NA	NA	False	NA	NA	NA	27276273	27314159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_27276649_27292071_27292143_27302503_27302626_27304062_27304150_27305812_27305972_27306119_27306219_27306564_27306649_27307925_27308073_27308235_27308332_27308589_27308641_27308803_27308947_27310284_27310385_27310466_27310628_27310787_27310930_27312148_27312311_27313768
transcript_56041.known	chr17	-	500	4	FSM	ENSMUSG00000024208.17	ENSMUST00000025045.15	500	4	0	0	0	0	multi-exon	TRUE	canonical	3	2713	junction_1	153.559977424675	990	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTGGAACTCATTCAT	1947	False	NA	2	True	AATAAA	-24	NA	27352890	27341636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27341815_27344120_27344191_27344857_27344933_27352713
transcript_5605.known	chr1	+	1194	3	FSM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	0	0	0	0	multi-exon	FALSE	canonical	3	989	junction_1	26.5	818	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGGCCCAGTGTCTTC	NA	False	NA	35	True	AATAAA	-17	NA	157239921	157247806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_157240696_157241313_157241366_157247438
transcript_56050.known	chr17	-	2627	9	FSM	ENSMUSG00000044857.9	ENSMUST00000055117.9	2627	9	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_7	66.5158580715907	607	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTTTATTTGTGGTGC	7993	False	NA	-1	True	AATAAA	-19	NA	27423443	27408573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27409765_27411905_27412009_27412076_27412179_27412811_27412958_27414298_27414379_27415109_27415187_27418336_27418413_27420610_27420652_27422632
transcript_5607.known	chr1	+	1618	10	FSM	ENSMUSG00000033488.12	ENSMUST00000046743.11	1618	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	9.08125188520113	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286149	157316630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157298185_157298368_157299757_157299987_157316012
transcript_56084.known	chr17	-	2149	2	FSM	ENSMUSG00000117916.2	ENSMUST00000235429.2	2149	2	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACTCCGACTTGGGTT	6249	False	NA	-9	True	NA	NA	NA	27461633	27454048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27456112_27461547
transcript_56098.known	chr17	+	1833	1	FSM	ENSMUSG00000073430.6	ENSMUST00000232347.2	1833	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCAAAGAGGTTCACTTC	9222	False	NA	NA	False	AATAAA	-29	NA	27544165	27545998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27544200_27546000
transcript_561.known	chr1	+	1581	9	FSM	ENSMUSG00000025925.15	ENSMUST00000027057.8	1581	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	336.315978656977	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCACCTAGCATTGA	NA	False	NA	51	True	TATAAA	-11	NA	15875887	15913694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
transcript_5610.known	chr1	+	5116	20	FSM	ENSMUSG00000040782.13	ENSMUST00000076894.11	5116	20	0	0	0	0	multi-exon	TRUE	canonical	3	188	junction_4	50.8633495988022	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATATGGTGGCACACTTC	NA	False	NA	NA	False	ATTAAA	-22	NA	159059895	159175210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_159060421_159067131_159067192_159072158_159072257_159076771_159076849_159077592_159077713_159080117_159080187_159094326_159094387_159095678_159095756_159105658_159105717_159112117_159112233_159116474_159116611_159134142_159134287_159135979_159136089_159136452_159136535_159147293_159147411_159152486_159152605_159154646_159154772_159156171_159156333_159170376_159170422_159172390
transcript_56104.known	chr17	+	1717	6	FSM	ENSMUSG00000046711.17	ENSMUST00000231825.2	1717	6	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	2331.48484876055	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	AATAAA	-22	NA	27775588	27782643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27775686_27775925_27776041_27778506_27778645_27779901_27779986_27780434_27780486_27781411
transcript_56105.known	chr17	+	1045	6	FSM	ENSMUSG00000046711.17	ENSMUST00000118599.9	1045	6	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	2332.99755679255	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCCCCAGCCCCATCTC	NA	False	NA	NA	False	NA	NA	NA	27775470	27781820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27775686_27775925_27776041_27778506_27778678_27779901_27779986_27780434_27780486_27781411
transcript_56106.known	chr17	+	1898	5	FSM	ENSMUSG00000046711.17	ENSMUST00000118570.2	1898	5	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	2173.91908485574	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACAGTCTCTGGTGTA	NA	False	NA	NA	False	AATAAA	-16	NA	27775641	27782637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27776041_27778506_27778645_27779901_27779986_27780434_27780486_27781411
transcript_56108.known	chr17	+	2001	5	FSM	ENSMUSG00000046711.17	ENSMUST00000231874.2	2001	5	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	2057.89800221002	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	AATAAA	-22	NA	27775577	27782643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27776041_27778506_27778678_27779901_27779986_27780434_27780486_27781411
transcript_56110.known	chr17	+	916	5	FSM	ENSMUSG00000046711.17	ENSMUST00000117254.9	916	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	2003.13017550033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAGGATGATGTTGGCT	NA	False	NA	NA	False	NA	NA	NA	27775636	27782008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27775686_27778506_27778645_27779901_27779986_27780434_27780486_27781414
transcript_56112.known	chr17	+	1595	5	FSM	ENSMUSG00000046711.17	ENSMUST00000117600.9	1595	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	1949.43562345618	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCTGGTGTAAGGAGCA	NA	False	NA	NA	False	AATAAA	-23	NA	27775626	27782644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781414
transcript_56114.known	chr17	+	917	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232552.2	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	1979.76797882984	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCTCCTGCCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	27775614	27781946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411
transcript_56116.known	chr17	+	600	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232253.2	600	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	2144.39797787164	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGCACCCAAGGGAGCAG	NA	False	NA	NA	False	NA	NA	NA	27775614	27781599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781414
transcript_56118.known	chr17	-	545	5	FSM	ENSMUSG00000062753.15	ENSMUST00000232203.2	545	5	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_2	100.906825834529	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784650	27782744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27782991_27783122_27783190_27783358_27783385_27783535_27783725_27784633
transcript_56119.known	chr17	-	862	5	FSM	ENSMUSG00000062753.15	ENSMUST00000154473.9	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_4	17.0934929139717	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACAAGGGGAGGTGGCC	NA	False	NA	NA	False	NA	NA	NA	27784730	27782546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784633
transcript_5612.known	chr1	+	2999	3	FSM	ENSMUSG00000058267.14	ENSMUST00000135680.8	2999	3	0	0	0	0	multi-exon	FALSE	canonical	3	2655	junction_1	51	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTAGGGTTGATCTGGCT	NA	False	NA	NA	False	AATAAA	-24	NA	160022784	160029740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160022882_160024515_160024675_160026997
transcript_56120.known	chr17	-	563	5	FSM	ENSMUSG00000062753.15	ENSMUST00000231753.2	563	5	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	99.6092365195116	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTTGCCCTCCTTGGGT	NA	False	NA	45	True	AATAAA	-14	NA	27784691	27782746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783595_27783725_27784633
transcript_56122.known	chr17	-	608	4	FSM	ENSMUSG00000062753.15	ENSMUST00000231948.2	608	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	112.499876543142	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784700	27782744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27782991_27783122_27783229_27783535_27783725_27784633
transcript_56125.known	chr17	-	644	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114881.9	644	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	2469.22413725445	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCCACTTGTGTATGTT	NA	False	NA	NA	False	AATAAA	-14	NA	27855643	27849397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27855538
transcript_56126.known	chr17	-	996	5	FSM	ENSMUSG00000024213.15	ENSMUST00000114886.8	996	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	152.175063660246	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCACTTTCCTGCATGC	NA	False	NA	NA	False	GGGGCT	-12	NA	27841938	27799547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27841564
transcript_56127.known	chr17	-	2223	5	FSM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_4	16.1458198924675	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTGTTCCATGTCAG	NA	False	NA	-18	True	AATAAA	-23	NA	27842469	27798355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
transcript_56130.known	chr17	-	1866	2	FSM	ENSMUSG00000024213.15	ENSMUST00000146321.3	1866	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTGTCCACTCCCT	NA	False	NA	NA	False	AATAAA	-29	NA	27842237	27814119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27815809_27842060
transcript_56131.known	chr17	-	498	5	FSM	ENSMUSG00000052146.17	ENSMUST00000178774.3	498	5	0	0	0	0	multi-exon	FALSE	canonical	3	4850	junction_1	728.093915645502	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGAGTTTATGTTGTAT	NA	False	NA	NA	False	NA	NA	NA	27853449	27849438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299
transcript_56132.known	chr17	+	4566	10	FSM	ENSMUSG00000040276.16	ENSMUST00000232437.2	4566	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	19.6078845315467	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCAAGGGTGAACTTGATC	NA	False	NA	NA	False	AATAAA	-17	NA	27874561	27930456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27874734_27920740_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_56133.known	chr17	+	4176	10	FSM	ENSMUSG00000040276.16	ENSMUST00000045896.11	4176	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	19.6078845315467	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGCTGGACTTGTCACC	NA	False	NA	NA	False	GATAAA	-16	NA	27874521	27930085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27874734_27920799_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_56134.known	chr17	+	4209	10	FSM	ENSMUSG00000040276.16	ENSMUST00000231669.2	4209	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	19.4193488848393	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGCTGGACTTGTCACC	NA	False	NA	NA	False	GATAAA	-16	NA	27904154	27930085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27904400_27920799_27920916_27921673_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_56135.known	chr17	+	1368	8	FSM	ENSMUSG00000040276.16	ENSMUST00000231350.2	1368	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	17.3511159436445	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCGTTTGCAGCCTACC	NA	False	NA	NA	False	TTTAAA	-45	NA	27923430	27927666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_27923527_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_56136.known	chr17	-	3892	5	FSM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	5.43139024560011	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTGCGTGTGATTCT	NA	False	NA	-1	True	ATTAAA	-34	NA	28039599	27970208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27972970_27986884_27987214_28005044_28005243_28012882_28013038_28039150
transcript_56137.known	chr17	-	1348	4	FSM	ENSMUSG00000056692.14	ENSMUST00000233508.2	1348	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	17.3781471969828	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTCCTGTGTGGCCACAG	NA	False	NA	NA	False	GGGGCT	-31	NA	28039426	27972250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27972970_28005044_28005243_28012882_28013038_28039150
transcript_56138.known	chr17	-	3573	5	FSM	ENSMUSG00000056692.14	ENSMUST00000114859.9	3573	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	15.5463018110418	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCCTTTATCCTGTGTG	NA	False	NA	-12	True	ATTAAA	-23	NA	28039516	27970219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_27972970_27987109_27987214_28005044_28005243_28012882_28013038_28039150
transcript_56139.known	chr17	+	984	7	FSM	ENSMUSG00000024217.11	ENSMUST00000232873.2	984	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	752.710306529382	1356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28057123	28070942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28057234_28058947_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_5614.known	chr1	+	787	3	FSM	ENSMUSG00000058267.14	ENSMUST00000097193.3	787	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1371.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAAAGTATGGTCTTTC	NA	False	NA	9	True	AATAAA	-9	NA	160022872	160027382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160023116_160024515_160024675_160026997
transcript_56140.nnic	chr17	+	774	6	NNC	ENSMUSG00000024217.11	novel	984	7	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	811.755529700907	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059083	28070942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_28059180_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_56141.known	chr17	+	758	6	FSM	ENSMUSG00000024217.11	ENSMUST00000071006.9	758	6	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_1	167.935225607971	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGTCCCTGTCCCTT	NA	False	NA	18	True	AATAAA	-20	NA	28059060	28070939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_56142.known	chr17	+	1013	6	FSM	ENSMUSG00000024217.11	ENSMUST00000233752.2	1013	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	791.835184871195	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059108	28070942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28059144_28059437_28059781_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_56143.known	chr17	+	8634	21	FSM	ENSMUSG00000039512.13	ENSMUST00000114849.3	8634	21	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_6	13.1601671721905	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCCTCGTGTGTCTGTT	5785	False	NA	NA	False	ATTAAA	-16	NA	28075414	28119015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28075769_28095636_28095800_28095897_28095937_28096295_28096388_28098197_28098388_28098624_28098766_28099108_28099280_28100402_28100590_28102994_28103082_28103407_28103579_28103886_28104027_28104380_28104523_28104874_28105069_28105236_28106667_28108973_28109171_28112114_28112267_28112352_28112504_28113520_28113784_28114243_28114353_28114433_28114535_28114855
transcript_5615.known	chr1	+	674	3	FSM	ENSMUSG00000058267.14	ENSMUST00000078878.14	674	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1378.5	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGTCTTTCCTTCAAGT	NA	False	NA	17	True	AATAAA	-17	NA	160022784	160027390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160022882_160024490_160024675_160026997
transcript_56151.known	chr17	+	5717	24	FSM	ENSMUSG00000024219.17	ENSMUST00000233525.2	5717	24	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_22	7.82125454670221	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGAAACCGGCCATAGCTC	4266	False	NA	0	True	AATAAA	-9	NA	28128306	28281737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28128621_28193878_28193960_28195534_28195692_28204039_28204337_28205225_28205302_28205524_28205627_28205718_28205821_28207693_28207891_28210281_28210375_28214907_28215029_28226822_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28278267_28278366_28279535
transcript_56157.known	chr17	-	2207	6	FSM	ENSMUSG00000024218.14	ENSMUST00000114848.8	2207	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	61.2483469164679	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTCTCTGTGTTGCCCT	NA	False	NA	-3	True	AATAAA	-25	NA	28128216	28120095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474_28127218_28127754
transcript_56160.known	chr17	-	1220	5	FSM	ENSMUSG00000024218.14	ENSMUST00000025057.5	1220	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_3	9.9373034571759	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGGTTTCTCTGTGT	NA	False	NA	-9	True	AATAAA	-19	NA	28126698	28120101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
transcript_56162.known	chr17	-	1496	1	FSM	ENSMUSG00000024218.14	ENSMUST00000233306.2	1496	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	28126709	28125213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28125200_28126700
transcript_56165.known	chr17	-	1628	1	FSM	ENSMUSG00000085521.5	ENSMUST00000142461.2	1628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGGAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	28295651	28294023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28294000_28295700
transcript_56169.known	chr17	+	3822	23	FSM	ENSMUSG00000038677.15	ENSMUST00000137147.9	3822	23	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	8.92716163604273	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAAGCCTAGACCTTGC	NA	False	NA	NA	False	NA	NA	NA	28361499	28391111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28361585_28371371_28371495_28372532_28372659_28374865_28375001_28375735_28375862_28376046_28376164_28377854_28377903_28379785_28379903_28381289_28381413_28381927_28382045_28382705_28382832_28383018_28383136_28383271_28383377_28383647_28383765_28384036_28384196_28384400_28384617_28384960_28385123_28385330_28385499_28385999_28386162_28386483_28386682_28387102_28387256_28387355_28387436_28390169
transcript_5617.known	chr1	-	2098	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAAAAAAGGA	7296	False	NA	NA	False	TATAAA	-11	NA	160040445	160029936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
transcript_56182.known	chr17	+	3784	22	FSM	ENSMUSG00000038677.15	ENSMUST00000233905.2	3784	22	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	9.37236735522407	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAACAGAAAGAAAGAAAA	NA	False	NA	NA	False	TTTAAA	-9	NA	28361291	28390916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28361585_28371371_28371495_28372532_28372659_28374865_28375001_28375738_28375862_28376046_28376164_28379785_28379903_28381289_28381413_28381927_28382045_28382705_28382832_28383018_28383136_28383271_28383377_28383647_28383765_28384036_28384196_28384400_28384617_28384960_28385123_28385330_28385499_28385999_28386162_28386483_28386682_28387102_28387256_28387355_28387436_28390169
transcript_56190.known	chr17	+	2710	15	FSM	ENSMUSG00000024220.15	ENSMUST00000002318.8	2710	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	29.7763774334828	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGGCTCCTCCATCAT	NA	False	NA	2	True	AATAAA	-14	NA	28396391	28424858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28396500_28398530_28398668_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
transcript_56194.known	chr17	+	2864	14	FSM	ENSMUSG00000024220.15	ENSMUST00000073534.10	2864	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_10	10.6092512939298	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGCTCCTCCATCATTT	NA	False	NA	4	True	AATAAA	-16	NA	28396102	28424860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
transcript_56197.nic	chr17	+	2735	14	NIC	ENSMUSG00000024220.15	novel	2864	14	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	23.9854492379845	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGGCTCCTCCATCAT	NA	False	NA	2	True	AATAAA	-14	NA	28396119	28424858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_28396390_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
transcript_56198.nnic	chr17	+	2622	13	NIC	ENSMUSG00000024220.15	novel	2710	15	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_9	22.220486043289	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGGCTCCTCCATCAT	NA	False	NA	2	True	AATAAA	-14	NA	28396108	28424858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421408_28421573_28422059_28422225_28423428_28423543_28424084
transcript_562.known	chr1	+	2268	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_7	69.1671798285292	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAGCTGGCATCTTGA	NA	False	NA	NA	False	AATAAA	-24	NA	15875869	15914276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
transcript_56203.known	chr17	-	3026	1	FSM	ENSMUSG00000117171.2	ENSMUST00000233181.2	3026	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTTCTGCGTTAAAAAG	NA	False	NA	NA	False	TATAAA	-16	NA	28396656	28393630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28393600_28396700
transcript_56204.known	chr17	+	2368	13	FSM	ENSMUSG00000024220.15	ENSMUST00000233904.2	2368	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	25.4050519910247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGGCTCCTCCATCAT	NA	False	NA	2	True	AATAAA	-14	NA	28396431	28424858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28423428_28423543_28424084
transcript_56207.known	chr17	+	2277	11	FSM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	14.7461859475595	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCCCTTCCCTCCCTC	NA	False	NA	17	True	AATAAA	-22	NA	28426751	28447582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
transcript_56209.nic	chr17	+	2401	11	NIC	ENSMUSG00000002257.9	novel	2277	11	NA	NA	-81	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	42.568650436677	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCCCTTCCCTCCCTC	NA	False	NA	17	True	AATAAA	-22	NA	28426670	28447582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_28426913_28435895_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
transcript_56215.known	chr17	+	739	5	FSM	ENSMUSG00000002250.17	ENSMUST00000233761.2	739	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.48746859276655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTCCCATTCTGTCAGAG	NA	False	NA	NA	False	NA	NA	NA	28451747	28516261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28451839_28455985_28456070_28505234_28505442_28514314_28514470_28516059
transcript_56216.known	chr17	+	1433	4	FSM	ENSMUSG00000002250.17	ENSMUST00000123020.9	1433	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.62466929133727	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACCAAGTTCTTATG	NA	False	NA	NA	False	NA	NA	NA	28451737	28515355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28451839_28455985_28456070_28505234_28505442_28514314
transcript_56218.known	chr17	+	3277	8	FSM	ENSMUSG00000002250.17	ENSMUST00000002320.16	3277	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	2.32115382989599	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTAGCCATCTGAGTTAT	NA	False	NA	26	True	AATAAA	-26	NA	28451673	28520448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28451839_28455985_28456070_28505234_28505442_28514314_28514470_28516059_28516199_28517250_28517454_28517557_28518009_28518575
transcript_5622.nic	chr1	-	743	5	ISM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	-10	2609	-10	1140	5prime_fragment	FALSE	canonical	3	4235	junction_4	139.582412932289	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGAGTGAGTTTAATG	7286	False	NA	8	True	AAAACA	-42	NA	160040455	160032545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
transcript_56222.nic	chr17	+	2145	11	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_9	55.0784894491488	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGCTTGGTGGCTCAGC	277	False	NA	13	True	AATAAA	-15	NA	28532463	28545542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28542544_28542640_28545125
transcript_56229.nic	chr17	+	2107	10	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	40.6086410557539	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	277	False	NA	12	True	AATAAA	-14	NA	28532463	28545541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545067
transcript_56230.known	chr17	+	2025	10	FSM	ENSMUSG00000007570.17	ENSMUST00000114803.9	2025	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	20.9655802580218	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGTGGCTCAGCCCTG	306	False	NA	17	True	AATAAA	-19	NA	28532492	28545546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
transcript_56232.known	chr17	+	1774	10	FSM	ENSMUSG00000007570.17	ENSMUST00000233381.2	1774	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	49.8013337121223	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTTGGTGGCTCAGCCCT	585	False	NA	16	True	AATAAA	-18	NA	28532771	28545545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537035_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545067
transcript_56233.known	chr17	+	1942	10	FSM	ENSMUSG00000007570.17	ENSMUST00000088007.12	1942	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	38.9558154266543	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGGCTTGGTGGCTCA	354	False	NA	11	True	AATAAA	-13	NA	28532540	28545540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537035_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
transcript_56244.known	chr17	+	1842	9	FSM	ENSMUSG00000007570.17	ENSMUST00000114804.11	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	47.2385898921634	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGCTTGGTGGCTCAGC	359	False	NA	13	True	AATAAA	-15	NA	28532545	28545542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28545125
transcript_56249.nic	chr17	+	2041	9	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	49.7543967906355	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGCTTGGTGGCTCAG	277	False	NA	12	True	AATAAA	-14	NA	28532463	28545541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545067
transcript_56250.nic	chr17	+	1982	9	NIC	ENSMUSG00000007570.17	novel	2025	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_3	35.076478942448	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGGCTTGGTGGCTCA	277	False	NA	11	True	AATAAA	-13	NA	28532463	28545540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
transcript_56254.nic	chr17	+	1953	9	NIC	ENSMUSG00000007570.17	novel	1942	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_4	48.2720157026822	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGGCTTGGTGGCTCA	277	False	NA	11	True	AATAAA	-13	NA	28532463	28545540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537035_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
transcript_5626.known	chr1	-	589	2	FSM	ENSMUSG00000014226.11	ENSMUST00000194167.2	589	2	0	0	0	0	multi-exon	FALSE	canonical	3	4235	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAACTCTGAGACGCTCC	7445	False	NA	NA	False	NA	NA	NA	160040296	160035656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160036166_160040216
transcript_56265.known	chr17	+	1825	8	FSM	ENSMUSG00000007570.17	ENSMUST00000114801.9	1825	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	56.3505790130149	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGCTTGGTGGCTCAGC	310	False	NA	13	True	AATAAA	-15	NA	28532496	28545542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28545125
transcript_5627.known	chr1	-	544	4	FSM	ENSMUSG00000014226.11	ENSMUST00000195654.2	544	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2050.03940341535	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAAAGCAGTTCAAAAAAA	7366	False	NA	NA	False	NA	NA	NA	160040375	160033685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160033766_160034182_160034280_160035957_160036166_160040216
transcript_56283.known	chr17	+	729	6	FSM	ENSMUSG00000037805.16	ENSMUST00000233427.2	729	6	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	3247.70076207769	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547541	28550006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28547593_28547787_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
transcript_56284.known	chr17	+	949	6	FSM	ENSMUSG00000037805.16	ENSMUST00000129935.8	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	2914.49848859113	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548255_28548347_28548497_28549498_28549672_28549803
transcript_56286.nic	chr17	+	494	5	ISM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	77	391	-20	-16	5prime_fragment	FALSE	canonical	3	5482	junction_4	1520.65684820738	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGTGGCCAAAGTGGATG	NA	False	NA	NA	False	AATGAA	-3	NA	28547521	28549616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498
transcript_56290.known	chr17	+	1022	5	FSM	ENSMUSG00000037805.16	ENSMUST00000150103.3	1022	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1550.72344004339	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTTGGTGTGCCTGT	NA	False	NA	-4	True	AATAAA	-15	NA	28547573	28550002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548497_28549498_28549672_28549803
transcript_56298.known	chr17	+	936	3	FSM	ENSMUSG00000037805.16	ENSMUST00000128758.9	936	3	0	0	0	0	multi-exon	FALSE	canonical	3	5715	junction_1	1608.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCACTGTGAGCTAGGCA	NA	False	NA	NA	False	NA	NA	NA	28547556	28548765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28547593_28547784_28547860_28547940
transcript_56300.known	chr17	+	1202	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547589	28550006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
transcript_56301.known	chr17	+	901	5	FSM	ENSMUSG00000037805.16	ENSMUST00000152665.3	901	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1346.05653205948	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	-5	True	AATAAA	-14	NA	28547559	28550001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
transcript_56302.known	chr17	+	384	5	FSM	ENSMUSG00000037805.16	ENSMUST00000232920.2	384	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	3519.9045707945	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGAGTCTCTGATTAAG	NA	False	NA	NA	False	NA	NA	NA	28547557	28549522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28547593_28547764_28547860_28547940_28548022_28548347_28548497_28549498
transcript_56303.known	chr17	-	2585	13	FSM	ENSMUSG00000002249.22	ENSMUST00000156862.3	2585	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	2.49861072509416	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGTTGTGCCATATGCAA	NA	False	NA	NA	False	ATTAAA	-19	NA	28569791	28550687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764_28552911_28553357_28553420_28553677_28553728_28553872_28554011_28554458_28554471_28555484_28555548_28559127_28559193_28560322_28560575_28569582
transcript_56319.known	chr17	-	3543	11	FSM	ENSMUSG00000024222.18	ENSMUST00000079413.11	3543	11	0	0	0	0	multi-exon	FALSE	canonical	2	296	junction_7	83.3980815127063	2082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCATGGCTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	28705123	28618067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28647325_28647441_28648194_28648338_28656965_28657111_28659901_28660028_28704925
transcript_56326.nic	chr17	-	3060	7	NIC	ENSMUSG00000024222.18	novel	3858	14	NA	NA	-114	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_6	192.900377282046	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	-14	True	AATAAA	-15	NA	28637615	28618070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637368
transcript_56327.nnic	chr17	-	2927	7	NNC	ENSMUSG00000024222.18	novel	3858	14	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	204.007080487146	165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	-14	True	AATAAA	-15	NA	28637528	28618070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637414
transcript_56333.known	chr17	+	2055	1	FSM	ENSMUSG00000066170.8	ENSMUST00000095448.5	2055	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	28742266	28744321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28742300_28744300
transcript_56334.known	chr17	+	2679	1	FSM	ENSMUSG00000066170.8	ENSMUST00000181029.3	2679	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGTTACTCTTCCAAAAGA	NA	False	NA	NA	False	NA	NA	NA	28741693	28744372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28741700_28744400
transcript_56335.known	chr17	+	522	3	FSM	ENSMUSG00000024224.6	ENSMUST00000025061.6	522	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTGTCTGTTTGCCCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	28768384	28771594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28768578_28769629_28769753_28771388
transcript_56336.known	chr17	-	611	3	FSM	ENSMUSG00000024225.6	ENSMUST00000025062.5	611	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTCCCACAGGGCAGAAGG	NA	False	NA	NA	False	AGTAAA	-31	NA	28779740	28777122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28777415_28777734_28777858_28779544
transcript_56338.known	chr17	+	1313	4	FSM	ENSMUSG00000062252.10	ENSMUST00000080780.8	1313	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTCAAGTGTCATCTTTA	8564	False	NA	NA	False	NA	NA	NA	28794626	28802567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28795387_28798904_28799142_28801953_28802000_28802297
transcript_5634.known	chr1	-	2748	21	FSM	ENSMUSG00000026721.17	ENSMUST00000028049.13	2748	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.5677165785993	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGGGAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	160620516	160084774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160084837_160085012_160085106_160169605_160169735_160219751_160219794_160269392_160269537_160270760_160270887_160281320_160281396_160299567_160299682_160454784_160454936_160472877_160472972_160509610_160509753_160528281_160528449_160529927_160530031_160537716_160537784_160549702_160549814_160551601_160551760_160561098_160561274_160563117_160563329_160566465_160566659_160568321_160568502_160620305
transcript_56344.nnic	chr17	-	4427	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-63	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGGTTCCACAAGTTTG	NA	False	NA	-13	True	AATAAA	-18	NA	28841524	28806623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_28808346_28808410_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_56359.known	chr17	-	4653	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTCCACAAGTTTGGT	NA	False	NA	-11	True	AATAAA	-20	NA	28841683	28806621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_56364.known	chr17	-	4804	15	FSM	ENSMUSG00000004865.17	ENSMUST00000233440.2	4804	15	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	84.536943982848	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTCCACAAGTTTGGT	NA	False	NA	-11	True	AATAAA	-20	NA	28841461	28806621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_5637.known	chr1	+	11006	20	FSM	ENSMUSG00000040423.12	ENSMUST00000161609.8	11006	20	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_16	4.23610650691766	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTGTAGTCTTTTTCTT	NA	False	NA	16	True	ATTAAA	-22	NA	160733987	160802548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160734270_160757533_160757915_160765681_160765803_160767564_160767805_160768388_160768565_160770097_160770299_160774103_160774237_160775876_160775996_160777791_160777905_160778410_160778693_160779184_160779400_160782353_160782722_160783384_160783550_160786970_160787124_160789840_160790055_160791048_160791140_160791277_160791411_160792519_160792691_160793242_160793359_160795216
transcript_56374.known	chr17	-	981	9	FSM	ENSMUSG00000004865.17	ENSMUST00000233129.2	981	9	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_8	93.865595401084	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTGCTGAGGCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	28841425	28819677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_56375.known	chr17	-	1002	8	FSM	ENSMUSG00000004865.17	ENSMUST00000232751.2	1002	8	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_7	99.9697913555564	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAGAGTGTTTTTATTT	NA	False	NA	NA	False	AGTAAA	-20	NA	28841425	28821449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_56384.known	chr17	+	3548	12	FSM	ENSMUSG00000053436.16	ENSMUST00000062694.16	3548	12	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_9	36.7805643969117	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTTCTCAGGTTTATT	5077	False	NA	12	True	AATAAA	-19	NA	28910315	28967379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28910830_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28955984_28956065_28960761_28960841_28963956_28964131_28965244
transcript_56385.known	chr17	+	3562	12	FSM	ENSMUSG00000053436.16	ENSMUST00000004990.14	3562	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_9	126.485422019579	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTCTCAGGTTTATTC	5064	False	NA	13	True	AATAAA	-20	NA	28910302	28967380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28910830_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28959653_28959734_28960761_28960841_28963956_28964131_28965244
transcript_56386.nic	chr17	+	1614	11	ISM	ENSMUSG00000053436.16	ENSMUST00000062694.16	3548	12	-7	3055	6	289	5prime_fragment	FALSE	canonical	3	310	junction_9	34.6842903920492	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCGTTTATGTAATATTT	5070	False	NA	NA	False	NA	NA	NA	28910308	28964324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_28910830_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28955984_28956065_28960761_28960841_28963956
transcript_56388.known	chr17	+	2937	12	FSM	ENSMUSG00000004864.14	ENSMUST00000233984.2	2937	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	12.7227264607489	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTATTATATCTAAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	28988270	28999207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_28988503_28988984_28989115_28990131_28990191_28994227_28994337_28994527_28994558_28995108_28995157_28995275_28995391_28995475_28995548_28996455_28996536_28996696_28996776_28997050_28997228_28997401
transcript_564.known	chr1	-	1163	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	0	0	0	0	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	14338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	-5	True	AATAAA	-25	NA	16174886	16171518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
transcript_56411.nnic	chr17	+	5669	13	NNC	ENSMUSG00000063952.17	novel	4223	11	NA	NA	-15817	-40	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	73.5222471999689	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATGCCTGTAAAGAATAC	NA	False	NA	-2	True	AATAAA	-9	NA	29004246	29057427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_29004515_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
transcript_56412.nnic	chr17	+	5757	13	NNC	ENSMUSG00000063952.17	novel	4223	11	NA	NA	-15817	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	73.5222471999689	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTGTGCGGTGCTGTTT	NA	False	NA	4	True	AATAAA	-13	NA	29004246	29057515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_29004515_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
transcript_56416.known	chr17	+	7169	13	FSM	ENSMUSG00000063952.17	ENSMUST00000004985.11	7169	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	90.6136487143815	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATTTGCATGTCTCACA	NA	False	NA	NA	False	NA	NA	NA	29020063	29058923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29020336_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
transcript_56430.nnic	chr17	+	2378	3	NNC	ENSMUSG00000063952.17	novel	4046	9	NA	NA	-15670	1827	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	34	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAAGTCAGTTTAG	NA	False	NA	NA	False	NA	NA	NA	29004393	29027109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_29004515_29016706_29016757_29024902
transcript_56434.known	chr17	-	4597	12	FSM	ENSMUSG00000048905.6	ENSMUST00000062357.6	4597	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	3.52558535084824	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAACCGGATCTTTTCA	NA	False	NA	-4	True	AATAAA	-15	NA	29134298	29115365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29117898_29118456_29118721_29120104_29120170_29120923_29121050_29121746_29121997_29122220_29122283_29123489_29123625_29124228_29124470_29124664_29124730_29127241_29127362_29128265_29128847_29134142
transcript_56435.known	chr17	-	1019	3	FSM	ENSMUSG00000045378.6	ENSMUST00000051526.6	1019	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTCTGTGTGTCTCTTTT	6213	False	NA	2	True	AATAAA	-18	NA	29161238	29152957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29153781_29160215_29160344_29161170
transcript_56437.known	chr17	+	4196	8	FSM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	164.609370626217	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171231	29188523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_56439.known	chr17	+	3853	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	75.1962247870345	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171395	29188523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_56447.known	chr17	+	3530	6	FSM	ENSMUSG00000005936.20	ENSMUST00000232874.2	3530	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	212.274727652634	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171444	29188523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29171544_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_56449.known	chr17	+	2162	7	FSM	ENSMUSG00000005936.20	ENSMUST00000117672.9	2162	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	191.759760000777	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTCTCTCCAGTATTG	NA	False	NA	2	True	AATAAA	-13	NA	29171654	29186903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29171732_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_5645.known	chr1	+	502	12	FSM	ENSMUSG00000053332.14	ENSMUST00000162558.8	502	12	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_7	1656.43137771865	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862732	160866107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_56454.known	chr17	-	3354	14	FSM	ENSMUSG00000024006.18	ENSMUST00000119274.3	3354	14	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_13	173.563487011723	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTGGATTTCTTTTAT	NA	False	NA	2	True	AATAAA	-21	NA	29226969	29189853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
transcript_56464.nic	chr17	-	1513	12	ISM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	-76	3424	-76	0	5prime_fragment	FALSE	canonical	3	678	junction_1	54.8244380569875	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGACTGGGAACACATC	NA	False	NA	NA	False	NA	NA	NA	29227045	29193277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
transcript_56471.known	chr17	-	1298	8	FSM	ENSMUSG00000024006.18	ENSMUST00000232724.2	1298	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	321.459173146451	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTCTCGGGCTGGCCA	NA	False	NA	NA	False	AATAAA	-4	NA	29226939	29199127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29199497_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
transcript_56474.known	chr17	-	627	4	FSM	ENSMUSG00000024006.18	ENSMUST00000232723.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_1	11.2644968324772	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACATGTTCACTTCTCTT	NA	False	NA	NA	False	AATATA	-15	NA	29226886	29210154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29210395_29211390_29211443_29218982_29219116_29226684
transcript_56479.nic	chr17	-	512	3	ISM	ENSMUSG00000024006.18	ENSMUST00000232723.2	627	4	-159	1270	-76	-1049	5prime_fragment	FALSE	canonical	3	706	junction_2	10.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATGGAAGAAGAAGGCC	NA	False	NA	-8	True	NA	NA	NA	29227045	29211424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_29211443_29218982_29219116_29226684
transcript_56480.known	chr17	-	2767	2	FSM	ENSMUSG00000024006.18	ENSMUST00000145298.2	2767	2	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	29226870	29216537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29219119_29226684
transcript_56482.known	chr17	+	2594	7	FSM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	890.897051042125	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	15	True	AATAAA	-17	NA	29251605	29261871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
transcript_56486.known	chr17	+	2618	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	0	0	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAGTATATTTTTATC	NA	False	NA	18	True	ATTAAA	-20	NA	29251601	29262347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
transcript_56499.known	chr17	+	518	3	FSM	ENSMUSG00000071172.14	ENSMUST00000233209.2	518	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	710	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTTCTTCCTAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	29251662	29257659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29251761_29255214_29255423_29257447
transcript_565.known	chr1	+	3587	6	FSM	ENSMUSG00000025921.8	ENSMUST00000027053.8	3587	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	4.02988833592198	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTGTCTTTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	16175997	16203958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_16176531_16178018_16178255_16198388_16198488_16199419_16199566_16201298_16201431_16201517
transcript_56500.known	chr17	+	1125	3	FSM	ENSMUSG00000117007.2	ENSMUST00000233006.2	1125	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGCAAACCTGCAGACT	1609	False	NA	NA	False	NA	NA	NA	29275833	29278719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29275960_29276834_29276933_29277818
transcript_56501.known	chr17	-	1464	2	FSM	ENSMUSG00000085912.3	ENSMUST00000233178.2	1464	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACGTAGCTCCATCATTG	NA	False	NA	NA	False	NA	NA	NA	29291764	29278028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29279333_29291604
transcript_56502.known	chr17	-	1433	2	FSM	ENSMUSG00000085912.3	ENSMUST00000233135.2	1433	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGTAGCTCCATCATTGC	NA	False	NA	NA	False	NA	NA	NA	29291821	29278027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29279333_29291693
transcript_56503.known	chr17	+	922	3	FSM	ENSMUSG00000023067.15	ENSMUST00000119901.9	922	3	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	538	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATACCGGAGGAACAGTC	1857	False	NA	NA	False	NA	NA	NA	29309952	29318675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29310076_29317370_29317812_29318317
transcript_56508.known	chr17	+	1913	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	0	0	0	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4647	False	NA	24	True	NA	NA	NA	29312742	29319696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29312836_29317370_29317812_29318317
transcript_56509.known	chr17	+	3730	14	FSM	ENSMUSG00000064147.8	ENSMUST00000233717.2	3730	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	2.02060392870211	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGTGTCAACTCTGAAG	6013	False	NA	NA	False	AATAAA	-14	NA	29333118	29367954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29333210_29339815_29340035_29350437_29350547_29352611_29352787_29354159_29354307_29354788_29354880_29355240_29355337_29356952_29357147_29358088_29359525_29363462_29363545_29364220_29364336_29364914_29365017_29366321_29366399_29367158
transcript_56513.known	chr17	-	333	1	FSM	ENSMUSG00000067575.6	ENSMUST00000147311.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	29356278	29355945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29355900_29356300
transcript_56515.known	chr17	-	5708	21	FSM	ENSMUSG00000024008.17	ENSMUST00000024805.15	5708	21	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_14	46.1512730051946	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCACTCCCATGCTC	8347	False	NA	NA	False	AGTAAA	-28	NA	29457141	29374529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29421478_29421543_29423662_29423723_29428397_29428475_29428663_29428704_29430621_29430726_29444164_29444212_29445166_29445208_29456586
transcript_56517.nnic	chr17	-	2490	14	NNC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-5056	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_8	10.3443664455472	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAGACCCCCCCTCTCC	3068	False	NA	-9	True	AGTAAA	-14	NA	29408133	29376889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29408003
transcript_5652.known	chr1	+	557	11	FSM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_7	1053.46856146731	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862636	160866107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_56526.nnic	chr17	-	2073	9	NNC	ENSMUSG00000024008.17	novel	2332	12	NA	NA	-7997	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	34	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAGACCCCCCCTCTCC	9048	False	NA	-9	True	AGTAAA	-14	NA	29386476	29376889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29386382
transcript_56528.nnic	chr17	-	474	5	NNC	ENSMUSG00000024008.17	novel	1144	14	NA	NA	-5073	-3882	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_4	5.44862367942584	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGATGCTCCAGGGGTGG	3051	False	NA	NA	False	NA	NA	NA	29408150	29392298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29408003
transcript_56536.known	chr17	-	1462	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	0	0	0	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	1199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCGGCCTTTTCTCTTTT	9689	False	NA	1	True	NA	NA	NA	29483160	29469776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
transcript_56537.nnic	chr17	-	1601	4	NNC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	-302	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	714.950969569864	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTGTGGTCTAGTAT	9387	False	NA	-28	True	AATAAA	-19	NA	29483462	29469805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_29470700_29471223_29471293_29480710_29480866_29482979
transcript_56538.known	chr17	-	1476	4	FSM	ENSMUSG00000024007.16	ENSMUST00000135123.3	1476	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	716.343182808042	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTGTGGTCTAGTAT	9927	False	NA	-28	True	AATAAA	-19	NA	29482922	29469805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29481147_29482845
transcript_56540.known	chr17	+	1210	1	FSM	ENSMUSG00000117614.2	ENSMUST00000234345.2	1210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGTGTGTGTGTGTGT	9957	False	NA	NA	False	AATAAA	-23	NA	29482972	29484182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29483000_29484200
transcript_56541.known	chr17	+	2812	9	FSM	ENSMUSG00000052712.18	ENSMUST00000064709.13	2812	9	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	54.6168472176855	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCTACCTTCTTACTGG	311	False	NA	18	True	NA	NA	NA	29487761	29521864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_56544.nnic	chr17	+	1735	9	NNC	ENSMUSG00000052712.18	novel	1694	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	111.000492679087	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCATGGGTTGGTTGCT	347	False	NA	12	True	AATAAA	-13	NA	29487797	29520496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_29488304_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_56545.known	chr17	+	1073	8	FSM	ENSMUSG00000052712.18	ENSMUST00000235114.2	1073	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	114.986245850075	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCATGGGTTGGTTGCT	468	False	NA	12	True	AATAAA	-13	NA	29487918	29520496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_56546.known	chr17	+	13859	8	FSM	ENSMUSG00000052712.18	ENSMUST00000234711.2	13859	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	113.402479906656	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAAAATCTTTGTTTGTT	348	False	NA	NA	False	ACTAAA	-15	NA	29487798	29533039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29487977_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_56550.nnic	chr17	+	956	7	NIC	ENSMUSG00000052712.18	novel	1073	8	NA	NA	24	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	129.043920171906	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCATGGGTTGGTTGCT	377	False	NA	12	True	AATAAA	-13	NA	29487827	29520496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_29487977_29496830_29496922_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_56553.known	chr17	+	773	6	FSM	ENSMUSG00000052712.18	ENSMUST00000235050.2	773	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	140.841187157735	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTTGCTTAGTTAC	476	False	NA	19	True	AATAAA	-20	NA	29487926	29520503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29487977_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_56554.known	chr17	+	1270	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234028.2	1270	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	118.386813032533	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATGGGTTGGTTGCTTA	484	False	NA	14	True	AATAAA	-15	NA	29487934	29520498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515536_29515664_29517615_29517740_29520329
transcript_56555.known	chr17	+	3994	7	FSM	ENSMUSG00000024011.18	ENSMUST00000114701.10	3994	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGACTTTTCTCAAAGGC	NA	False	NA	NA	False	NA	NA	NA	29537797	29549567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29538366_29541159_29541382_29544846_29544957_29545247_29545337_29545821_29546608_29546811_29546945_29547481
transcript_56557.known	chr17	-	1108	13	FSM	ENSMUSG00000024012.19	ENSMUST00000235021.2	1108	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	349.661850538806	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566490	29551049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29551213_29551634_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555140_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
transcript_56558.known	chr17	-	1093	13	FSM	ENSMUSG00000024012.19	ENSMUST00000153658.3	1093	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	333.56966622015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566526	29551049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29551213_29551634_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
transcript_5656.known	chr1	+	793	11	FSM	ENSMUSG00000053332.14	ENSMUST00000161461.8	793	11	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1709.07735342787	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862747	160866109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_56560.known	chr17	-	1652	13	FSM	ENSMUSG00000024012.19	ENSMUST00000234416.2	1652	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_11	417.184478245403	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566526	29551049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29560038_29560176_29561796_29561882_29566440
transcript_56562.known	chr17	-	1952	12	FSM	ENSMUSG00000024012.19	ENSMUST00000095427.12	1952	12	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_4	200.604458475704	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAAGCCTCTTATTTAT	NA	False	NA	-5	True	AATAAA	-25	NA	29566908	29551045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555140_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
transcript_56564.known	chr17	-	1897	12	FSM	ENSMUSG00000024012.19	ENSMUST00000118366.9	1897	12	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_4	160.665917948029	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566908	29551049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
transcript_56566.known	chr17	-	2082	11	FSM	ENSMUSG00000024012.19	ENSMUST00000234948.2	2082	11	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_3	167.440616339047	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566908	29551049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29551753_29552487_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
transcript_56567.known	chr17	+	2640	16	FSM	ENSMUSG00000024013.16	ENSMUST00000024810.8	2640	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.894427190999916	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGAGGGTCTGAGCCTGG	NA	False	NA	NA	False	AATAAA	-38	NA	29579887	29598527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29580132_29582684_29582917_29583884_29583966_29584435_29584585_29585944_29586102_29586244_29586384_29586894_29586954_29587157_29587305_29588218_29588312_29592191_29592272_29592357_29592389_29592984_29593078_29593820_29593953_29595801_29595949_29597286_29597434_29597818
transcript_56593.known	chr17	+	2698	6	FSM	ENSMUSG00000024014.9	ENSMUST00000024811.9	2698	6	0	0	0	0	multi-exon	FALSE	canonical	3	1677	junction_4	112.874443520223	1248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGTTTTCCATTCATT	NA	False	NA	17	True	AATAAA	-18	NA	29709726	29715086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29710200_29710298_29710406_29710493_29710545_29710638_29711006_29712695_29712873_29713563
transcript_56614.known	chr17	+	1578	5	FSM	ENSMUSG00000024014.9	ENSMUST00000234294.2	1578	5	0	0	0	0	multi-exon	FALSE	canonical	3	1677	junction_3	119.340636415263	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29710278	29714419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29710406_29710493_29710545_29710638_29711006_29712695_29712873_29713563
transcript_56620.known	chr17	+	3595	13	FSM	ENSMUSG00000042203.9	ENSMUST00000048677.9	3595	13	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_11	15.481844205391	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGGGGCTTTGGTTTCCTG	NA	False	NA	11	True	AATAAA	-17	NA	29768758	29825869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29813650_29813758_29814821_29814898_29818812_29818941_29819119_29819216_29823817
transcript_56622.known	chr17	+	3651	13	FSM	ENSMUSG00000042203.9	ENSMUST00000234778.2	3651	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	38.5777533762084	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTTTGGTTTCCTGGTG	NA	False	NA	14	True	AATAAA	-20	NA	29768764	29825872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790769_29791943_29792073_29794129_29794196_29797802_29797918_29813650_29813758_29814821_29814898_29818812_29818941_29819119_29819216_29823817
transcript_56626.nnic	chr17	+	3549	12	NIC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	-12	0	combination_of_known_splicesites	TRUE	canonical	2	13	junction_1	38.1705611111127	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCGGGGCTTTGGTTTCCT	NA	False	NA	10	True	AATAAA	-16	NA	29768746	29825868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_29768969_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29813650_29813758_29814821_29814898_29818812_29818941_29819119_29819216_29823817
transcript_56629.nnic	chr17	+	1991	9	NNC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	-17	-22088	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	44.8857925740428	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATATGTATTTATGTATA	NA	False	NA	NA	False	AATAAA	-24	NA	29768741	29803780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29802942
transcript_56635.known	chr17	+	6380	24	FSM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	0	0	0	0	multi-exon	TRUE	canonical	3	368	junction_15	33.7979652859003	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTTCTCTCTGATGT	NA	False	NA	28	True	AATAAA	-30	NA	29879568	29924953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
transcript_56644.known	chr17	+	1780	9	FSM	ENSMUSG00000090083.12	ENSMUST00000234362.2	1780	9	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	87.2496418330757	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCTCAGCTGGGCTTC	NA	False	NA	16	True	AATAAA	-15	NA	29833941	29860623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29845817_29845920_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
transcript_56648.known	chr17	+	5404	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGCTCCCTGACT	NA	False	NA	NA	False	NA	NA	NA	29833763	29863965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
transcript_56656.known	chr17	-	7117	5	FSM	ENSMUSG00000024018.19	ENSMUST00000129091.9	7117	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	115.181107391794	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGTTTCTTGAGTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	29935983	29912433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29919227_29923343_29923444_29924244_29924298_29924462_29924558_29935907
transcript_5666.known	chr1	+	904	10	FSM	ENSMUSG00000053332.14	ENSMUST00000162289.8	904	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_7	1101.2203780296	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAACTGTGAAGTGTGCA	NA	False	NA	16	True	ATTAAA	-12	NA	160862732	160866103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865608_160865794_160865843_160866026
transcript_56662.known	chr17	-	1397	4	FSM	ENSMUSG00000024018.19	ENSMUST00000128751.3	1397	4	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_3	23.9072281027215	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCTGTAAGACACACTGA	NA	False	NA	NA	False	AGTAAA	-20	NA	29936018	29922305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_29923444_29924244_29924298_29924462_29924558_29935907
transcript_56666.known	chr17	-	8425	17	FSM	ENSMUSG00000043557.17	ENSMUST00000171691.9	8425	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.81666358481094	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATCTTGCGTGTGTTGGGC	NA	False	NA	NA	False	AATAAA	-25	NA	30107682	30046922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_30051374_30051886_30051996_30052195_30052327_30056965_30057101_30057410_30057564_30058522_30058547_30058778_30058957_30059770_30059923_30061092_30061381_30061818_30062116_30065294_30065625_30068130_30068401_30068613_30068747_30069465_30069663_30071415_30071591_30076563_30076704_30106420
transcript_56668.known	chr17	-	1477	9	FSM	ENSMUSG00000043557.17	ENSMUST00000165528.8	1477	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	2.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCCAGCACCTTCTTTA	NA	False	NA	-2	True	ATTAAA	-18	NA	30061395	30051029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_30051374_30051886_30051996_30052195_30052327_30056965_30057101_30057410_30057564_30058522_30058547_30058778_30058957_30059770_30059871_30061092
transcript_56671.known	chr17	+	3489	5	FSM	ENSMUSG00000044477.13	ENSMUST00000226421.3	3489	5	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	47.3623004086584	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTGCAGTGACTTTGCT	NA	False	NA	NA	False	AATAAA	-20	NA	30224021	30429802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_30224283_30354296_30354480_30372276_30372343_30411536_30411705_30426991
transcript_56673.known	chr17	+	2565	4	FSM	ENSMUSG00000044477.13	ENSMUST00000226308.2	2565	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	49.2769948578667	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTCTTTTTTTTCTCCTGC	NA	False	NA	-42	True	ATTAAA	-16	NA	30224024	30428947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_30224283_30354296_30354480_30411536_30411705_30426991
transcript_56674.known	chr17	+	3039	6	FSM	ENSMUSG00000044477.13	ENSMUST00000226208.3	3039	6	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	13.1301180497359	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGATTGTCTGTGTTGGC	NA	False	NA	7	True	ATTAAA	-16	NA	30223706	30428996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30372276_30372343_30411536_30411705_30426991
transcript_56675.known	chr17	+	2640	5	FSM	ENSMUSG00000044477.13	ENSMUST00000057897.10	2640	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	41.3037528561268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGATTGTCTGTGTTG	NA	False	NA	5	True	ATTAAA	-14	NA	30224037	30428994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30411536_30411705_30426991
transcript_56676.known	chr17	-	2007	12	FSM	ENSMUSG00000062202.15	ENSMUST00000079924.8	2007	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	31.2708773237183	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACCCCAGGCCTTGACAA	NA	False	NA	NA	False	TTTAAA	-39	NA	30795143	30439029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_30439119_30439318_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
transcript_56679.nnic	chr17	-	2461	11	NNC	ENSMUSG00000062202.15	novel	7058	11	NA	NA	-5	0	intron_retention	FALSE	canonical	2	10	junction_10	30.6400065274144	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	30795467	30439073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749314_30795119
transcript_5668.known	chr1	+	665	10	FSM	ENSMUSG00000053332.14	ENSMUST00000159119.8	665	10	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_6	1774.02353596925	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGTGAAGTGTGCATT	NA	False	NA	18	True	ATTAAA	-14	NA	160862498	160866105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_56680.known	chr17	-	7058	11	FSM	ENSMUSG00000062202.15	ENSMUST00000168787.8	7058	11	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	22.2551117723547	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGAGTTTGTGCCTTCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30795462	30434497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
transcript_56685.known	chr17	-	1375	6	FSM	ENSMUSG00000062202.15	ENSMUST00000236910.2	1375	6	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_1	4.24264068711928	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACAAAAAACCCAAAAT	NA	False	NA	NA	False	NA	NA	NA	30795233	30732449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
transcript_56686.known	chr17	-	414	1	FSM	ENSMUSG00000117962.2	ENSMUST00000235315.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATGCCATATTTTCA	9280	False	NA	NA	False	NA	NA	NA	30615007	30614593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_30614600_30615000
transcript_56689.known	chr17	+	16685	93	FSM	ENSMUSG00000033826.11	ENSMUST00000236140.2	16685	93	0	0	0	0	multi-exon	TRUE	canonical	2	15	junction_44	14.4763185797332	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTGGATATCCAAGAAG	199	False	NA	NA	False	ATTAAA	-19	NA	30845908	31096339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104_30903222_30905356_30905477_30909154_30909291_30912922_30913036_30914083_30914191_30919363_30919437_30920818_30921006_30923628_30923826_30925358_30925486_30927264_30927501_30929475_30929581_30931246_30931361_30932007_30932071_30934453_30934555_30936737_30936876_30937800_30938042_30939972_30940173_30941872_30942027_30944055_30944220_30945759_30945863_30947136_30947242_30948054_30948217_30949987_30950213_30955002_30955176_30956224_30956404_30958541_30958730_30960100_30960188_30960281_30960390_30961629_30961765_30963487_30963650_30965731_30965979_30966120_30966363_30966820_30966962_30967481_30967720_30970420_30970564_30971020_30971156_30971795_30971919_30973947_30974162_30975676_30975787_30977218_30977383_30978543_30978737_30979979_30980103_30981614_30981746_30984569_30984724_30986772_30986938_30988616_30988844_30990770_30990890_30992502_30992607_30993919_30994097_30997980_30998149_30998696_30998913_31001357_31001496_31003036_31003165_31003980_31004153_31006118_31006275_31009800_31009957_31013606_31013790_31019457_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31093815
transcript_5669.nic	chr1	+	994	10	NIC	ENSMUSG00000053332.14	novel	557	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_6	967.274955483792	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862636	160866109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_56704.nic	chr17	+	3472	20	ISM	ENSMUSG00000033826.11	ENSMUST00000235507.2	13457	83	-1	131706	0	56	5prime_fragment	TRUE	canonical	3	31	junction_2	9.07494190819529	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGATTTGGGTCCTTTC	199	False	NA	NA	False	AATAAA	-19	NA	30845908	30903581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104
transcript_56709.nic	chr17	+	2973	17	ISM	ENSMUSG00000033826.11	ENSMUST00000236647.2	13856	91	164556	1	-65	0	3prime_fragment	FALSE	canonical	3	38	junction_6	12.5882820015282	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGCTCGCCTGTCTCTTC	NA	False	NA	23	True	ATTAAA	-14	NA	31019285	31094237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31093815
transcript_5671.nnic	chr1	+	429	10	NIC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	388	junction_4	1715.49943776955	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_56714.known	chr17	+	3099	11	FSM	ENSMUSG00000033826.11	ENSMUST00000237551.2	3099	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	9.52942810456116	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAATAAAATAAAAAT	199	False	NA	NA	False	NA	NA	NA	30845908	30878195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942
transcript_5672.known	chr1	+	759	10	FSM	ENSMUSG00000053332.14	ENSMUST00000160429.8	759	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_6	1099.1542202985	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	17	True	ATTAAA	-13	NA	160862735	160866104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_56723.known	chr17	-	845	4	FSM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	117.235754879739	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30845879	30841414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_30841669_30843173_30843588_30843854_30843908_30845755
transcript_56726.known	chr17	-	898	6	FSM	ENSMUSG00000024026.14	ENSMUST00000235171.2	898	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1306.85751327373	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAGCTCCCTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	30831576	30812839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816867_30819012_30819154_30822993_30823077_30831441
transcript_56727.known	chr17	+	5811	13	FSM	ENSMUSG00000024027.9	ENSMUST00000114574.3	5811	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.40947204913349	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGAGAGCTTTCCTTAGT	5253	False	NA	NA	False	AATAAA	-23	NA	31120790	31159765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31120929_31127094_31127192_31128197_31128306_31137853_31137973_31138329_31138437_31143474_31143629_31144491_31144652_31148910_31148972_31149500_31149571_31149691_31149781_31150122_31150262_31151586_31151629_31155238
transcript_56732.known	chr17	+	5832	15	FSM	ENSMUSG00000024030.8	ENSMUST00000024829.8	5832	15	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_11	5.07947048501744	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTGCATTTGGTGTCAAA	NA	False	NA	NA	False	AATAAA	-33	NA	31276660	31336962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31276831_31283358_31283603_31311282_31311401_31313619_31313753_31317226_31317278_31323010_31323157_31324490_31324615_31325033_31325149_31327279_31327429_31327588_31327691_31328456_31328626_31329930_31330032_31330194_31330354_31331902_31332022_31333030
transcript_56735.nic	chr17	+	2717	13	NIC	ENSMUSG00000042345.16	novel	2539	13	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	6.05300659911163	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACCTTATGATTCTATT	NA	False	NA	NA	False	NA	NA	NA	31431036	31461064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_31431334_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
transcript_56736.nic	chr17	+	3033	13	NIC	ENSMUSG00000042345.16	novel	2539	13	NA	NA	-50	316	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	6.05300659911163	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTCGCTCAGGTCGTT	NA	False	NA	5	True	CATAAA	-18	NA	31431036	31461380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_31431334_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
transcript_56738.known	chr17	+	2539	13	FSM	ENSMUSG00000042345.16	ENSMUST00000151620.9	2539	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.05300659911163	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACCTTATGATTCTATT	NA	False	NA	NA	False	NA	NA	NA	31431086	31461064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31431206_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
transcript_56740.known	chr17	-	1191	9	FSM	ENSMUSG00000024033.11	ENSMUST00000024832.9	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	7.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCTCTGATGTCGCTTC	NA	False	NA	-1	True	AATAAA	-26	NA	31496357	31473992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31492498_31492613_31496175
transcript_56744.known	chr17	+	3389	20	FSM	ENSMUSG00000024036.17	ENSMUST00000165149.3	3389	20	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_8	17.4641698891444	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGATTTCCATCCAAGTC	NA	False	NA	NA	False	AATAAA	-45	NA	31515188	31569701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31515890_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
transcript_56747.known	chr17	+	2972	20	FSM	ENSMUSG00000024036.17	ENSMUST00000171233.9	2972	20	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	29.0842695772492	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGTCTCCATCCTGCTA	NA	False	NA	NA	False	AATACA	-15	NA	31514456	31569713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31514729_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
transcript_56749.nic	chr17	+	3459	20	NIC	ENSMUSG00000024036.17	novel	2972	20	NA	NA	-30	0	combination_of_known_junctions	TRUE	canonical	3	25	junction_1	25.6401693159089	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGCCCAC	NA	False	NA	NA	False	AATAAA	-13	NA	31514426	31569669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_31515230_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
transcript_56760.known	chr17	+	1891	19	FSM	ENSMUSG00000041119.13	ENSMUST00000127929.8	1891	19	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_18	14.1770114735436	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTGTATTTTTTTTCT	NA	False	NA	NA	False	AATATA	-15	NA	31605227	31695133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690829_31692131_31692254_31694901
transcript_56775.known	chr17	-	1897	11	FSM	ENSMUSG00000024037.14	ENSMUST00000236665.2	1897	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	145.464634877347	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTGGAATGTTCAGCAG	NA	False	NA	-17	True	AATAAA	-17	NA	31731283	31715095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722626_31728742_31728887_31729551_31729621_31731140
transcript_56776.known	chr17	-	3633	11	FSM	ENSMUSG00000024037.14	ENSMUST00000172284.9	3633	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	141.425033144772	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACGTTGTCTCTGTGTCT	NA	False	NA	-1	True	ATTAAA	-22	NA	31731257	31713296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728794_31728887_31729551_31729621_31731140
transcript_56779.known	chr17	+	1582	4	FSM	ENSMUSG00000024038.18	ENSMUST00000046288.16	1582	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	1707.19269237216	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739091	31750305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31739236_31740542_31740667_31746283_31747376_31750083
transcript_56782.known	chr17	+	493	3	FSM	ENSMUSG00000024038.18	ENSMUST00000064798.16	493	3	0	0	0	0	multi-exon	FALSE	canonical	3	3604	junction_2	48.5	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739088	31750305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31739236_31740542_31740667_31750083
transcript_56783.known	chr17	-	2711	1	FSM	ENSMUSG00000117818.2	ENSMUST00000235158.2	2711	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGCTGTTCTGTCTGCT	NA	False	NA	-2	True	NA	NA	NA	31771231	31768520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31768500_31771200
transcript_56786.known	chr17	+	2170	12	FSM	ENSMUSG00000006705.14	ENSMUST00000175806.9	2170	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	48.0870422916989	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTATGACTATATTGAGGA	NA	False	NA	NA	False	TATAAA	-15	NA	31783835	31824466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31783863_31800777_31801025_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814198_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
transcript_56791.known	chr17	+	2014	11	FSM	ENSMUSG00000006705.14	ENSMUST00000237248.2	2014	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	40.2970222224918	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCACATGCTTGTCTTTCG	NA	False	NA	NA	False	GATAAA	-16	NA	31783780	31824505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_31783863_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814201_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
transcript_568.known	chr1	-	3907	12	FSM	ENSMUSG00000025920.20	ENSMUST00000128957.9	3907	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_10	22.8368268627019	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGGTATGATTTAAGCC	NA	False	NA	NA	False	NA	NA	NA	16589471	16413709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16556243_16556375_16579565_16579633_16589396
transcript_56807.known	chr17	-	2533	17	FSM	ENSMUSG00000024039.16	ENSMUST00000067801.14	2533	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_16	84.4695766237762	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCTTGGTGTGAGTGTC	1872	False	NA	1	True	NA	NA	NA	31856212	31831596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
transcript_56819.known	chr17	-	2403	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGTGTCGACCTTATT	1945	False	NA	-17	True	NA	NA	NA	31856139	31831614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
transcript_56829.known	chr17	-	882	1	FSM	ENSMUSG00000118161.2	ENSMUST00000236305.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	7279	False	NA	NA	False	NA	NA	NA	31863753	31862871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31862900_31863800
transcript_56833.known	chr17	-	975	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGTGACTTCTTGTAA	NA	False	NA	-18	True	AATAAA	-18	NA	31877729	31866055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
transcript_56838.known	chr17	-	1046	8	FSM	ENSMUSG00000061613.14	ENSMUST00000014684.6	1046	8	0	0	0	0	multi-exon	FALSE	canonical	3	4626	junction_6	706.208473585007	1297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877866	31866054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
transcript_56839.known	chr17	-	923	8	FSM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	0	0	0	0	multi-exon	FALSE	canonical	3	1007	junction_5	2353.82216310201	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877743	31866054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
transcript_56843.known	chr17	-	532	6	FSM	ENSMUSG00000061613.14	ENSMUST00000236475.2	532	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_5	2542.17667364013	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGAGGTGGAGGTGGCGG	NA	False	NA	NA	False	NA	NA	NA	31877715	31866262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31877626
transcript_56845.known	chr17	-	4521	14	FSM	ENSMUSG00000024042.8	ENSMUST00000024839.6	4521	14	0	0	0	0	multi-exon	FALSE	canonical	2	135	junction_9	20.6380472449028	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTGTGAGAGCCCATTC	NA	False	NA	-4	True	AATAAA	-34	NA	32074778	32063223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32065618_32066006_32066236_32066868_32067151_32067605_32067823_32067932_32068056_32068492_32068649_32068901_32069126_32069699_32069824_32069914_32070040_32070208_32070371_32070506_32070571_32073181_32073299_32073867_32074039_32074645
transcript_56880.known	chr17	+	4874	16	FSM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_12	76.5992747282172	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGATGTTGCCTC	NA	False	NA	22	True	ATTAAA	-24	NA	32255073	32281839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
transcript_56912.nic	chr17	+	1372	13	ISM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	138	6250	138	0	5prime_fragment	FALSE	canonical	3	488	junction_12	82.9425838892316	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAAGAGGAAGAGGAGT	NA	False	NA	NA	False	AAGAAA	-2	NA	32255211	32275589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529
transcript_56913.nic	chr17	+	1770	13	ISM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	-39	6029	-39	0	5prime_fragment	TRUE	canonical	3	488	junction_12	82.9425838892316	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGGCCGAGAAAGAAGAAACT	NA	False	NA	NA	False	AATAAA	-7	NA	32255034	32275810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529
transcript_56914.nic	chr17	+	1927	13	ISM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	165	5668	-126	166	5prime_fragment	FALSE	canonical	3	488	junction_12	82.9425838892316	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATGAAGCTGATGTCAAAC	NA	False	NA	NA	False	AAAAAG	-11	NA	32255238	32276171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529
transcript_56921.nic	chr17	+	1143	12	ISM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	284	6891	-7	-628	5prime_fragment	FALSE	canonical	3	505	junction_11	72.1702532526072	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTTTTAGAGAGTGAGA	NA	False	NA	NA	False	AAGAAA	-1	NA	32255357	32274948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884
transcript_56952.known	chr17	-	3115	9	FSM	ENSMUSG00000002076.13	ENSMUST00000238192.2	3115	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	409.307036343134	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACCTTGCAGGGATTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	32255323	32163742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418_32253677_32255269
transcript_5696.known	chr1	+	346	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	1912.24889508	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
transcript_56960.known	chr17	-	1479	7	FSM	ENSMUSG00000002076.13	ENSMUST00000133308.3	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	334.770941590415	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253511	32165055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
transcript_56969.known	chr17	-	1591	7	FSM	ENSMUSG00000037577.14	ENSMUST00000162117.3	1591	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	2.21108319357027	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCGGTCTGATGTTTAA	994	False	NA	NA	False	CATAAA	-26	NA	32408523	32403633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407759_32407846_32408008
transcript_56973.known	chr17	-	2118	11	FSM	ENSMUSG00000024002.19	ENSMUST00000125899.2	2118	11	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	101.852049562098	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAGGAAAAGCAC	NA	False	NA	5	True	NA	NA	NA	32503651	32432618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32443832_32443961_32444549_32444688_32448390_32448710_32472014_32472175_32503491
transcript_56990.nic	chr17	-	2154	10	NIC	ENSMUSG00000024002.19	novel	2118	11	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	87	junction_9	69.0524938983397	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAAAGAAAAATAACAGCA	NA	False	NA	87	True	NA	NA	NA	32503733	32432536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503491
transcript_56997.nic	chr17	-	2107	10	NIC	ENSMUSG00000024002.19	novel	2118	11	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	87	junction_9	69.0524938983397	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTGGAGGAAAATAAAAAAAG	NA	False	NA	40	True	NA	NA	NA	32503733	32432583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503491
transcript_57.known	ERCC-00165	+	856	1	FSM	ERCC-00165A	DQ668363	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	110	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00165_+_0_900
transcript_57000.known	chr17	-	1823	9	FSM	ENSMUSG00000024002.19	ENSMUST00000237692.2	1823	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	78.3700157904795	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAAAGAAAAATAACAGCA	NA	False	NA	87	True	NA	NA	NA	32503107	32432536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503036
transcript_57001.known	chr17	-	1910	9	FSM	ENSMUSG00000024002.19	ENSMUST00000127893.8	1910	9	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_8	42.5850252436229	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTGGAGGAAAATAAAAAAAG	NA	False	NA	40	True	NA	NA	NA	32503696	32432583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503491
transcript_57031.known	chr17	-	3731	14	FSM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	0	0	0	0	multi-exon	TRUE	canonical	3	426	junction_6	74.0811964579343	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTGTTCATTAATTAC	NA	False	NA	-1	True	AATAAA	-16	NA	32540159	32522645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
transcript_57032.known	chr17	-	4570	14	FSM	ENSMUSG00000024045.7	ENSMUST00000237381.2	4570	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	145.1715981155	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTGTGTTCATTAATT	NA	False	NA	-3	True	AATAAA	-14	NA	32540111	32522647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32532237_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
transcript_57045.known	chr17	-	4071	13	FSM	ENSMUSG00000024045.7	ENSMUST00000237103.2	4071	13	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_6	76.8282265114124	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTGTGTTCATTAATT	NA	False	NA	-3	True	AATAAA	-14	NA	32540099	32522647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
transcript_57051.known	chr17	-	2021	12	FSM	ENSMUSG00000024045.7	ENSMUST00000236954.2	2021	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_10	162.409186321627	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTCCTAAAACGGACAG	NA	False	NA	-29	True	AATAAA	-22	NA	32540087	32523970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32537744_32537784_32540058
transcript_57060.nic	chr17	-	1413	11	ISM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	-10	6972	-10	3210	5prime_fragment	FALSE	canonical	3	426	junction_3	72.1407651747609	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGAAACGGCGTCAGGAG	NA	False	NA	NA	False	CATAAA	-15	NA	32540169	32529617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
transcript_57088.known	chr17	-	1987	15	FSM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_11	68.7455007804221	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTCGTTTGTGCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	32569569	32540398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557764_32557798_32564297_32564373_32569460
transcript_57098.known	chr17	-	2102	14	FSM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_6	38.0609912279546	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569581	32540397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
transcript_571.known	chr1	-	2964	11	FSM	ENSMUSG00000025920.20	ENSMUST00000162007.8	2964	11	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_9	11.3207773584679	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTTGATTCATATAGTGA	NA	False	NA	NA	False	AATAAA	-18	NA	16589464	16414514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16579565_16579633_16589396
transcript_57113.known	chr17	-	3513	13	FSM	ENSMUSG00000002625.11	ENSMUST00000236039.2	3513	13	0	0	0	0	multi-exon	TRUE	canonical	3	272	junction_5	37.9549257526462	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569549	32540397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
transcript_57121.known	chr17	-	4381	12	FSM	ENSMUSG00000002625.11	ENSMUST00000236105.2	4381	12	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_7	23.6967759427869	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569551	32540397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
transcript_57136.nic	chr17	-	948	5	ISM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	-21	14861	-21	188	5prime_fragment	FALSE	canonical	3	358	junction_1	16.6508258053467	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAATAAGCTGACCTACCC	NA	False	NA	NA	False	NA	NA	NA	32569602	32555258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
transcript_57137.known	chr17	-	800	4	FSM	ENSMUSG00000002625.11	ENSMUST00000235387.2	800	4	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_2	2.94392028877595	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTGGGACTAACCACTG	NA	False	NA	NA	False	NA	NA	NA	32569563	32556899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32557489_32557764_32557798_32564297_32564373_32569460
transcript_57143.nnic	chr17	-	3623	9	NNC	ENSMUSG00000024050.19	novel	3578	9	NA	NA	-4	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	66.4506395755526	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGGGCAAACAGCCAGT	NA	False	NA	-16	True	ATTAAA	-18	NA	32583441	32573034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576959_32577916_32578469_32580434_32580939_32581766_32581938_32583155_32583238_32583394
transcript_57144.nnic	chr17	-	3649	9	NNC	ENSMUSG00000024050.19	novel	3578	9	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	66.4506395755526	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGGGCAAACAGCCAGT	NA	False	NA	-16	True	ATTAAA	-18	NA	32583446	32573034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576959_32577916_32578469_32580434_32580939_32581766_32581938_32583155_32583252_32583387
transcript_57145.known	chr17	-	4175	9	FSM	ENSMUSG00000024050.19	ENSMUST00000087703.12	4175	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_8	91.2762804621222	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCAAACAGCCAGTGTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	32607859	32573030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576956_32577916_32578469_32580434_32580939_32586797_32587122_32606546_32606792_32607577
transcript_5715.known	chr1	+	1614	7	FSM	ENSMUSG00000053332.14	ENSMUST00000162163.8	1614	7	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_3	1089.57866474462	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862753	160866109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_57150.known	chr17	-	3293	18	FSM	ENSMUSG00000052142.16	ENSMUST00000135618.8	3293	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.23108526685037	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCACCGGTTTCTCTGC	NA	False	NA	NA	False	AGTAAA	-11	NA	32622555	32609897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32610210_32610309_32610374_32611019_32611178_32611371_32611763_32612496_32612616_32612714_32612917_32613011_32613249_32614048_32614194_32614795_32614941_32615321_32615859_32616283_32616383_32616467_32616595_32616994_32617066_32617890_32617953_32618058_32618138_32618263_32618404_32622029_32622374_32622494
transcript_57155.nnic	chr17	+	2830	14	NNC	ENSMUSG00000061126.6	novel	1599	12	NA	NA	-1670	-5	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	22.6347379252941	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGACAATTTGTGCTCC	NA	False	NA	NA	False	ACTAAA	-13	NA	32670026	32712243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_32670364_32684452_32684556_32687434_32687658_32689777_32689923_32700047_32700102_32700753_32700882_32701060_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_57161.nic	chr17	+	1961	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13504	-790	3715	-5	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGACAATTTGTGCTCC	NA	False	NA	NA	False	ACTAAA	-13	NA	32700939	32712243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_57162.nic	chr17	+	2012	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13504	-841	3715	0	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTCTACTGGCATGGGG	NA	False	NA	NA	False	AATAGA	-14	NA	32700939	32712294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_57163.known	chr17	+	2618	14	FSM	ENSMUSG00000061126.6	ENSMUST00000237491.2	2618	14	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	21.761482720107	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTCTACTGGCATGGGG	NA	False	NA	NA	False	AATAGA	-14	NA	32671696	32712294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_32671771_32684452_32684556_32687434_32687658_32689777_32689923_32700047_32700102_32700753_32700882_32701060_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_57167.known	chr17	+	1693	13	FSM	ENSMUSG00000091586.3	ENSMUST00000165999.2	1693	13	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_12	8.54725426997206	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATCTACTACTGTCCCA	NA	False	NA	NA	False	NA	NA	NA	32725435	32747868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747249_32747333_32747690
transcript_57171.nnic	chr17	+	3181	13	NNC	ENSMUSG00000091586.3	novel	1693	13	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	11.056672193748	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAAGAAAAAATGAGA	NA	False	NA	NA	False	NA	NA	NA	32725398	32749117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_32725553_32725867_32726067_32736867_32737215_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747249_32747333_32747690
transcript_57183.known	chr17	+	2242	13	FSM	ENSMUSG00000048440.17	ENSMUST00000169591.8	2242	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	14.6806278249036	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	21	True	NA	NA	NA	32755531	32770772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_32755630_32755968_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_57185.known	chr17	+	2227	13	FSM	ENSMUSG00000048440.17	ENSMUST00000003416.15	2227	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_12	10.7625895273086	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGTCTTGGTTCCAT	NA	False	NA	20	True	NA	NA	NA	32755542	32770771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_57188.known	chr17	+	2078	12	FSM	ENSMUSG00000048440.17	ENSMUST00000165515.8	2078	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	22.7559818672762	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	21	True	NA	NA	NA	32755550	32770772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_32755630_32755968_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_57190.nic	chr17	+	2108	12	NIC	ENSMUSG00000048440.17	novel	2227	13	NA	NA	-16	0	combination_of_known_junctions	TRUE	canonical	3	16	junction_2	20.9331876957963	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATGTCTTGGTTCCA	NA	False	NA	19	True	NA	NA	NA	32755515	32770770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_32755630_32755971_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_57198.nic	chr17	+	831	7	ISM	ENSMUSG00000048440.17	ENSMUST00000003416.15	2227	13	-27	6846	-16	526	5prime_fragment	FALSE	canonical	3	71	junction_3	12.7725834852973	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTTCGTTGACTTCC	NA	False	NA	NA	False	AATAAA	-16	NA	32755515	32763925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856
transcript_57200.nic	chr17	+	1976	11	ISM	ENSMUSG00000090700.3	ENSMUST00000165061.2	1858	12	2543	-227	2543	0	3prime_fragment	FALSE	canonical	1	2	junction_3	2.53968501984006	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAAGCCTGGCTTTCCTTT	1797	False	NA	NA	False	AATAAA	-18	NA	32880926	32895888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_32881237_32886789_32886844_32886927_32887056_32888747_32888870_32889978_32890250_32892904_32892972_32893155_32893286_32894468_32894603_32894685_32894751_32894877_32894961_32895276
transcript_57201.known	chr17	-	10851	4	FSM	ENSMUSG00000024298.16	ENSMUST00000159086.10	10851	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1.24721912892465	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGGTGCTGTCAT	NA	False	NA	-5	True	NA	NA	NA	33007261	32984469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_32994983_32996130_32996192_32996374_32996502_33007111
transcript_57205.known	chr17	-	3536	4	FSM	ENSMUSG00000055202.12	ENSMUST00000200914.5	3536	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	3.09120616516523	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCACTGCTTTCATGT	4484	False	NA	2	True	ATTAAA	-25	NA	33028905	33014649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33017848_33019360_33019422_33019785_33019913_33028755
transcript_57206.known	chr17	-	374	4	FSM	ENSMUSG00000095253.5	ENSMUST00000202759.2	374	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	14.4452991200136	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAATATACCGAAGGTCA	NA	False	NA	NA	False	AATGAA	-44	NA	33049220	33040051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33040074_33040751_33040813_33041041_33041175_33049062
transcript_57209.known	chr17	-	5337	4	FSM	ENSMUSG00000095325.4	ENSMUST00000228075.3	5337	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	10.4986771653491	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTCCAGTTTTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	33110616	33098192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33103140_33104676_33104738_33104930_33105058_33110414
transcript_57212.known	chr17	-	1752	13	FSM	ENSMUSG00000024055.16	ENSMUST00000075253.13	1752	13	0	0	0	0	multi-exon	FALSE	canonical	2	129	junction_12	13.5285192587117	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGCATCAGACCAAAAT	NA	False	NA	-7	True	AATAAA	-29	NA	33166376	33143661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151515_33151602_33151657_33160029_33160175_33165778_33165978_33166286
transcript_57216.nic	chr17	-	1847	12	NIC	ENSMUSG00000024055.16	novel	1752	13	NA	NA	-7	0	intron_retention	FALSE	canonical	2	129	junction_11	13.6369696835023	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGCATCAGACCAAAAT	NA	False	NA	-7	True	AATAAA	-29	NA	33166383	33143661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151657_33160029_33160175_33165778_33165978_33166286
transcript_57225.known	chr17	-	1657	3	FSM	ENSMUSG00000024055.16	ENSMUST00000146718.2	1657	3	0	0	0	0	multi-exon	FALSE	canonical	2	129	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	33166365	33158795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33160175_33165778_33165978_33166286
transcript_57227.nic	chr17	-	783	4	NIC	ENSMUSG00000024295.10	novel	897	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	1.24721912892465	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGATATTCATTGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	33184686	33174970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_33175278_33176622_33176849_33179548_33179752_33184639
transcript_57228.known	chr17	-	762	4	FSM	ENSMUSG00000024295.10	ENSMUST00000234619.2	762	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.02768199119819	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGATATTCATTGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	33184669	33174970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33175278_33176622_33176849_33179548_33179752_33184643
transcript_57229.known	chr17	+	2376	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAGTTGGCTGGCATAG	NA	False	NA	NA	False	AATAAA	-37	NA	33184787	33198207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
transcript_57233.known	chr17	+	2950	4	FSM	ENSMUSG00000053390.17	ENSMUST00000087666.11	2950	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	3.55902608401044	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGGTGATCGGTCTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	33212170	33224431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33212233_33220597_33220725_33220931_33220993_33221731
transcript_57235.known	chr17	-	3407	4	FSM	ENSMUSG00000067430.8	ENSMUST00000087654.5	3407	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	5.73488351136175	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGTTCAAATGAGATTT	2759	False	NA	-16	True	NA	NA	NA	33252376	33235836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33238944_33240431_33240484_33240679_33240807_33252255
transcript_57236.known	chr17	-	3544	4	FSM	ENSMUSG00000094441.3	ENSMUST00000008830.10	3544	4	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	10.077477638554	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGTTGTGTTGTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	33474119	33458691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33461925_33462686_33462745_33462981_33463109_33473993
transcript_57244.known	chr17	+	5788	4	FSM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	21.7613316585993	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTGTTGTGGTTT	NA	False	NA	16	True	ATTAAA	-18	NA	33508517	33526215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738
transcript_57251.known	chr17	-	812	5	FSM	ENSMUSG00000003929.12	ENSMUST00000235063.2	812	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	15.2540978100968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCACTTCTGATCAAGAT	NA	False	NA	NA	False	AATAAA	-23	NA	33577842	33554283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33557074_33557226_33577707
transcript_57252.known	chr17	-	6639	4	FSM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	5.43650214343336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTTGGTTGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	33577852	33548315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33577707
transcript_57254.known	chr17	-	2659	4	FSM	ENSMUSG00000055240.18	ENSMUST00000167107.10	2659	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	5.79271573232759	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACTGATTTTTGCTTTT	NA	False	NA	NA	False	AATAAA	-35	NA	33613615	33599228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33601561_33605395_33605442_33605658_33605786_33613461
transcript_57258.known	chr17	-	6095	3	FSM	ENSMUSG00000055240.18	ENSMUST00000174512.4	6095	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAATGAAAACATG	NA	False	NA	NA	False	AATAAA	-23	NA	33613597	33599609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33605442_33605658_33605786_33613461
transcript_57260.known	chr17	+	4043	25	FSM	ENSMUSG00000024299.18	ENSMUST00000087623.13	4043	25	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_9	8.74483974822994	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTGCTCCTGACCGGG	NA	False	NA	3	True	AATAAA	-16	NA	33743177	33772742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553_33750772_33756065_33756150_33756252_33756399_33756873_33756918_33757041_33757148_33757237_33757385_33757544_33757687_33762171_33762280_33762609_33762756_33762845_33762910_33763928_33764032_33764277_33764412_33764515_33764640_33767796_33767878_33767970_33768135_33768232_33768360_33768453_33768584_33769439_33769645_33769987_33770165_33770241_33770405_33772058
transcript_57265.known	chr17	+	1798	5	FSM	ENSMUSG00000024299.18	ENSMUST00000174170.3	1798	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	5.3851648071345	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATTAAAAAAGAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	33743195	33751623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553
transcript_57266.known	chr17	+	2533	3	FSM	ENSMUSG00000024299.18	ENSMUST00000234715.2	2533	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTCCGGCT	NA	False	NA	NA	False	NA	NA	NA	33743183	33749950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33743233_33747257_33747445_33747653
transcript_57270.known	chr17	+	1211	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	162.952702749397	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4917	False	NA	29	True	AATACA	-19	NA	33848063	33850690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
transcript_57271.known	chr17	+	1197	6	FSM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	31.6569107779012	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGAGTGCTCTTCTCCG	4917	False	NA	92	True	NA	NA	NA	33848063	33850753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
transcript_57275.known	chr17	+	944	5	FSM	ENSMUSG00000073423.11	ENSMUST00000170225.3	944	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	178.871986347779	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTATAGGAGCAGGTTG	4948	False	NA	NA	False	NA	NA	NA	33848094	33850437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33848191_33848754_33849054_33849340_33849449_33849549_33849656_33850102
transcript_57276.known	chr17	+	1544	5	FSM	ENSMUSG00000073423.11	ENSMUST00000172455.3	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	35.2233942146409	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACATGATTTTTACCT	4928	False	NA	3	True	NA	NA	NA	33848074	33850664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33850438_33850515
transcript_57282.known	chr17	-	2370	17	FSM	ENSMUSG00000059208.16	ENSMUST00000087582.13	2370	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	626.847466369411	882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5740	False	NA	-8	True	AATAAA	-13	NA	33904393	33865212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
transcript_57286.known	chr17	-	2428	17	FSM	ENSMUSG00000059208.16	ENSMUST00000139302.8	2428	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	711.141860737891	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5771	False	NA	-5	True	AATAAA	-16	NA	33904362	33865209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33865720_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
transcript_57291.known	chr17	-	3934	16	FSM	ENSMUSG00000059208.16	ENSMUST00000148178.8	3934	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	644.248999481826	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGCCTTTTTTGTTTTTG	4299	False	NA	-2	True	AATAAA	-19	NA	33905834	33865206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
transcript_57322.known	chr17	-	2470	7	FSM	ENSMUSG00000079557.12	ENSMUST00000167611.8	2470	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	128.275744654501	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAGAAAAGGCC	2701	False	NA	NA	False	AATACA	-30	NA	33937619	33904786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33905373_33906201_33907217_33910992_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33937519
transcript_57325.known	chr17	-	1398	5	FSM	ENSMUSG00000079557.12	ENSMUST00000172767.9	1398	5	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	25.5196003103497	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGTTTCTAAGCTGTTC	2676	False	NA	-11	True	AATAAA	-33	NA	33937644	33910488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33937519
transcript_57328.known	chr17	-	1418	5	FSM	ENSMUSG00000079557.12	ENSMUST00000173015.8	1418	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	109.184476918654	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGTTTCTAAGCTGTTC	2706	False	NA	-11	True	AATAAA	-33	NA	33937614	33910488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33911178_33915010_33915221_33921986_33922183_33928718_33928947_33937519
transcript_5733.known	chr1	-	2473	5	FSM	ENSMUSG00000043467.20	ENSMUST00000159250.9	2473	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2.06155281280883	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGGAGAAGTAAAATGAGC	NA	False	NA	NA	False	NA	NA	NA	160862418	160846828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160847977_160857211_160857312_160859374_160860332_160861657_160861855_160862347
transcript_57332.known	chr17	-	2566	4	FSM	ENSMUSG00000079557.12	ENSMUST00000173329.8	2566	4	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_3	10.1434160364686	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATTAAAAAAAAATT	2689	False	NA	NA	False	NA	NA	NA	33937631	33913190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33915221_33921986_33922183_33928718_33928947_33937519
transcript_57335.known	chr17	-	2626	2	FSM	ENSMUSG00000059208.16	ENSMUST00000127598.3	2626	2	0	0	0	0	multi-exon	FALSE	canonical	3	2094	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAACAGGAAGGGCAAC	5756	False	NA	NA	False	NA	NA	NA	33904377	33893925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33896415_33904240
transcript_57337.known	chr17	-	380	4	FSM	ENSMUSG00000059208.16	ENSMUST00000234043.2	380	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	987.12106653642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAAGTCAAGGAAGTGAG	5767	False	NA	NA	False	AAAAAG	-42	NA	33904366	33887973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33888053_33888142_33888151_33896247_33896415_33904240
transcript_57339.known	chr17	-	6109	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTCATGATGCTTCA	NA	False	NA	NA	False	NA	NA	NA	33979504	33961457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
transcript_5734.known	chr1	-	18814	5	FSM	ENSMUSG00000043467.20	ENSMUST00000162226.9	18814	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2.06155281280883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAATCTCTGTCTTTATG	NA	False	NA	-4	True	AATAAA	-17	NA	160862419	160830491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160847977_160857211_160857312_160859374_160860335_160861657_160861855_160862347
transcript_57341.known	chr17	-	1544	5	FSM	ENSMUSG00000077450.14	ENSMUST00000173860.8	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	253.00296440951	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTTTGGTTTTTGTTAT	NA	False	NA	-71	True	NA	NA	NA	33979280	33965723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968877_33979196
transcript_5735.known	chr1	+	530	4	FSM	ENSMUSG00000053332.14	ENSMUST00000065709.12	530	4	0	0	0	0	multi-exon	FALSE	canonical	3	3576	junction_1	1146.64215090072	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGCCAAATACTGGCC	NA	False	NA	NA	False	ACTAAA	-36	NA	160862741	160864199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777
transcript_57351.known	chr17	+	925	2	FSM	ENSMUSG00000090952.3	ENSMUST00000170103.3	925	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCTGATTTCATTTTC	3477	False	NA	19	True	NA	NA	NA	33978965	33980844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_33979562_33980515
transcript_57352.known	chr17	-	924	5	FSM	ENSMUSG00000077450.14	ENSMUST00000173987.2	924	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	258.561767282017	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCCTTCACCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	33979254	33966387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33966788_33967483_33967560_33967840_33968035_33968755_33968952_33979196
transcript_57353.known	chr17	-	1859	7	FSM	ENSMUSG00000002289.17	ENSMUST00000173869.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	47.4812828620102	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACATTTTGTTCTCTG	NA	False	NA	-11	True	AATAAA	-8	NA	34000517	33993881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999618_33999756_33999868_34000036
transcript_57354.known	chr17	+	2652	11	FSM	ENSMUSG00000042099.17	ENSMUST00000172649.8	2652	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	101.139952541021	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTCGTATTGTGTGGAT	NA	False	NA	9	True	AATAAA	-12	NA	34029496	34041888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34029540_34035159_34035238_34036167_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
transcript_57360.known	chr17	+	1640	10	FSM	ENSMUSG00000042099.17	ENSMUST00000234357.2	1640	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	109.894674603335	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	4519	False	NA	12	True	AATAAA	-15	NA	34036880	34041891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34036986_34037166_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
transcript_57368.known	chr17	+	783	6	FSM	ENSMUSG00000042099.17	ENSMUST00000173789.2	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	124.071592236096	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	NA	False	NA	12	True	AATAAA	-15	NA	34029496	34041891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34029540_34035159_34035220_34040742_34040889_34040979_34041181_34041259_34041350_34041648
transcript_57371.known	chr17	-	382	4	FSM	ENSMUSG00000067288.14	ENSMUST00000173844.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	4307.03060897722	3572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043536	34042023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34042091_34042166_34042305_34043272_34043321_34043407
transcript_57375.known	chr17	-	812	2	FSM	ENSMUSG00000067288.14	ENSMUST00000174788.2	812	2	0	0	0	0	multi-exon	FALSE	canonical	3	16929	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAAATTGTAAGTGGGG	NA	False	NA	NA	False	NA	NA	NA	34043458	34042559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34043321_34043407
transcript_57376.known	chr17	-	271	4	FSM	ENSMUSG00000067288.14	ENSMUST00000166693.3	271	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	9429.71906026662	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043450	34042025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34042068_34042166_34042305_34043272_34043321_34043407
transcript_57377.known	chr17	-	372	3	FSM	ENSMUSG00000067288.14	ENSMUST00000173480.8	372	3	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	5274.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043439	34042023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34042091_34042166_34042305_34043272
transcript_57380.known	chr17	+	528	4	FSM	ENSMUSG00000041881.14	ENSMUST00000048249.8	528	4	0	0	0	0	multi-exon	FALSE	canonical	3	7458	junction_2	513.174650798558	2142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTTCTTAGTATTTA	4074	False	NA	33	True	AATATA	-24	NA	34043545	34057291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34043655_34044574_34044625_34048640_34048791_34057072
transcript_57386.known	chr17	+	438	3	FSM	ENSMUSG00000041881.14	ENSMUST00000173132.8	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	4049.5	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAATCTGTCTTTTCTT	4106	False	NA	25	True	AATATA	-16	NA	34043577	34057283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34043655_34048640_34048791_34057072
transcript_57387.known	chr17	+	610	2	FSM	ENSMUSG00000041881.14	ENSMUST00000173182.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	8081	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCCTTGTCCTCAGGC	4096	False	NA	NA	False	NA	NA	NA	34043567	34045097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34043655_34044574
transcript_57393.known	chr17	+	2209	5	FSM	ENSMUSG00000002308.17	ENSMUST00000002379.15	2209	5	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	13.0072095393286	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGCATGGAAACAGAATT	6993	False	NA	NA	False	NA	NA	NA	34062064	34068748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34062266_34064989_34065116_34066468_34066700_34066990_34067153_34067259
transcript_57394.known	chr17	+	1191	5	FSM	ENSMUSG00000002308.17	ENSMUST00000087559.8	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	143.673240375513	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGCCTCTAGCCTGT	7328	False	NA	21	True	ATTAAA	-14	NA	34062399	34067725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34062606_34064989_34065116_34066468_34066700_34066990_34067153_34067259
transcript_57395.known	chr17	+	1417	4	FSM	ENSMUSG00000002308.17	ENSMUST00000234506.2	1417	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	11.8977121983832	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTAGCCTGTTT	7055	False	NA	23	True	ATTAAA	-16	NA	34062126	34067727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34062266_34064989_34065116_34066468_34067153_34067259
transcript_57398.known	chr17	+	492	2	FSM	ENSMUSG00000002308.17	ENSMUST00000173418.2	492	2	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCGTACGGGGAGGGTG	7005	False	NA	NA	False	NA	NA	NA	34062076	34065292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34062266_34064989
transcript_57404.known	chr17	-	2357	11	FSM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	0	0	0	0	multi-exon	FALSE	canonical	1	168	junction_4	135.039586788467	1205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTTTTGCTTTTTT	9693	False	NA	-7	True	AATAAA	-26	NA	34109635	34094632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
transcript_57407.nnic	chr17	+	913	3	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-11966	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_1	2.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	NA	False	NA	13	True	NA	NA	NA	34112142	34125649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_34112309_34124501_34124892_34125292
transcript_57408.known	chr17	+	807	3	FSM	ENSMUSG00000092349.2	ENSMUST00000172817.2	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	58	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	1259	False	NA	13	True	NA	NA	NA	34124108	34125649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34124169_34124501_34124892_34125292
transcript_57409.known	chr17	-	462	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174467.2	462	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATATTCCCTTTTACG	1223	False	NA	-5	True	AATAAA	-23	NA	34128183	34127155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34127561_34128126
transcript_57410.known	chr17	-	978	2	FSM	ENSMUSG00000092564.3	ENSMUST00000172526.3	978	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTGAACATACGAGCAT	1254	False	NA	NA	False	NA	NA	NA	34128152	34127017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34127561_34127717
transcript_5743.known	chr1	+	2556	4	FSM	ENSMUSG00000053332.14	ENSMUST00000161229.8	2556	4	0	0	0	0	multi-exon	FALSE	canonical	3	4541	junction_3	423.601489872524	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160865118_160865564_160865608_160865794_160865843_160866026
transcript_57439.known	chr17	+	2581	8	FSM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	66.597787546753	2826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5569	False	NA	12	True	AATAAA	-23	NA	34128418	34134564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
transcript_57452.nic	chr17	+	2649	8	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	220.781728022433	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5599	False	NA	12	True	AATAAA	-23	NA	34128448	34134564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_34128671_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
transcript_57458.known	chr17	+	2673	8	FSM	ENSMUSG00000002307.17	ENSMUST00000170075.9	2673	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	226.475389481542	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTGTATTCTTTCCTTTA	5725	False	NA	4	True	AATAAA	-15	NA	34128574	34134556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34128829_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
transcript_57467.nic	chr17	+	2656	7	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	-12	0	intron_retention	FALSE	canonical	3	546	junction_5	71.9320667173009	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5610	False	NA	12	True	AATAAA	-23	NA	34128459	34134564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34133037_34134316
transcript_5748.known	chr1	-	3619	17	FSM	ENSMUSG00000026709.11	ENSMUST00000035430.4	3619	17	0	0	0	0	multi-exon	TRUE	canonical	3	321	junction_5	41.9044672439586	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCCTGCATGTCCTGAAC	NA	False	NA	NA	False	NA	NA	NA	160898228	160868170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
transcript_5749.nic	chr1	-	2170	17	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_16	96.678510409501	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898233	160869074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160898112
transcript_57516.known	chr17	+	387	2	FSM	ENSMUSG00000051390.11	ENSMUST00000174463.2	387	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAGGCATGACTTCCA	NA	False	NA	NA	False	NA	NA	NA	34134877	34136116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34134939_34135790
transcript_57517.known	chr17	+	2612	2	FSM	ENSMUSG00000051390.11	ENSMUST00000053429.11	2612	2	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	0	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCCCAACACCCCT	NA	False	NA	11	True	ATTAAA	-20	NA	34135144	34138299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34135248_34135790
transcript_57518.known	chr17	+	2898	8	FSM	ENSMUSG00000024308.16	ENSMUST00000025161.10	2898	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_6	36.6951033823983	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGCCTCTCATTCTCCC	292	False	NA	13	True	AATAAA	-18	NA	34138305	34148266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
transcript_57519.known	chr17	+	2589	8	FSM	ENSMUSG00000024308.16	ENSMUST00000234247.2	2589	8	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	40.4101421902563	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGGGCCTCTCATTCTCC	597	False	NA	12	True	AATAAA	-17	NA	34138610	34148265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145603_34145681_34147113
transcript_57524.known	chr17	+	3252	18	FSM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	23.5177912481234	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	3234	False	NA	12	True	AATAAA	-18	NA	34148555	34156661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34149019_34149218_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
transcript_57544.nic	chr17	+	2811	17	NIC	ENSMUSG00000041354.17	novel	943	8	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	27.6331294599435	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	4504	False	NA	12	True	AATAAA	-18	NA	34149825	34156661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_34150045_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
transcript_5755.nic	chr1	-	2667	16	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	101.925768195399	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898243	160869074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
transcript_57586.known	chr17	-	560	5	FSM	ENSMUSG00000024309.16	ENSMUST00000174048.8	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	444.939602642876	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	False	NA	-15	True	AATAAA	-17	NA	34159299	34157892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
transcript_57588.known	chr17	-	807	4	FSM	ENSMUSG00000024309.16	ENSMUST00000025163.14	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_1	64.8194072447099	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGATTCTGTTTTGCTTTC	NA	False	NA	83	True	NA	NA	NA	34159317	34157794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997
transcript_57589.known	chr17	-	396	4	FSM	ENSMUSG00000024309.16	ENSMUST00000174426.2	396	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	515.769974568767	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGCCAATAAAATGTAAACA	NA	False	NA	-42	True	NA	NA	NA	34159304	34157919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34159270
transcript_57591.known	chr17	-	685	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173678.3	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	1189	junction_1	13.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCCTTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	34159305	34158331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34158638_34158721_34158793_34158997
transcript_57598.nnic	chr17	+	2599	15	NNC	ENSMUSG00000024312.11	novel	2229	15	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	78.5502568878222	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCTGGACCATCCTGTA	1973	False	NA	13	True	ATTAAA	-16	NA	34159627	34168671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163091_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
transcript_57603.known	chr17	+	2229	15	FSM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	25.4498305996527	1257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCTGGACCATCCTGTA	1979	False	NA	13	True	ATTAAA	-16	NA	34159633	34168671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
transcript_57618.known	chr17	-	1580	1	FSM	ENSMUSG00000067370.5	ENSMUST00000087543.5	1580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCAGCGTCTTCACCAG	NA	False	NA	-2	True	AATAAA	-17	NA	34170462	34168882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34168900_34170500
transcript_57626.known	chr17	+	3383	20	FSM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	0	0	0	0	multi-exon	FALSE	canonical	2	228	junction_10	32.2850016205651	518	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTGATTTTGTACTGT	NA	False	NA	31	True	NA	NA	NA	34174785	34186009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
transcript_5764.known	chr1	-	2126	14	FSM	ENSMUSG00000026709.11	ENSMUST00000160591.8	2126	14	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_2	32.3146512651852	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGATAAAAATTGAGCCTA	NA	False	NA	NA	False	NA	NA	NA	160898177	160872752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
transcript_57649.known	chr17	-	715	6	FSM	ENSMUSG00000008668.16	ENSMUST00000234380.2	715	6	0	0	0	0	multi-exon	FALSE	canonical	1	30	junction_3	10301.0144238322	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34172713_34172883_34174051_34174151_34174591
transcript_57652.known	chr17	-	527	5	FSM	ENSMUSG00000008668.16	ENSMUST00000174609.9	527	5	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_2	9115.60860557319	2000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34171093_34171194_34171268_34171376_34171566_34174051_34174151_34174591
transcript_57654.known	chr17	-	632	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174175.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_3	1274.65978031613	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCGTCTCAGTTTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	34174634	34170973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34171093_34171194_34171566_34174051_34174151_34174591
transcript_57657.known	chr17	-	395	2	FSM	ENSMUSG00000008668.16	ENSMUST00000174662.2	395	2	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGGTCTGCAGAAGCTA	NA	False	NA	NA	False	NA	NA	NA	34174634	34173798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34174151_34174591
transcript_57659.known	chr17	-	974	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174620.3	974	4	0	0	0	0	multi-exon	FALSE	canonical	3	21077	junction_1	1022.38979302851	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCCGTCTCAGTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	34174627	34170975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
transcript_57660.known	chr17	-	1052	6	FSM	ENSMUSG00000067203.9	ENSMUST00000174250.4	1052	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.338094023943	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCAGCTGCCTGGAGTGG	3681	False	NA	NA	False	NA	NA	NA	34197764	34194049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34194083_34194453_34194588_34194714_34194990_34196744_34197021_34197227_34197498_34197700
transcript_57663.known	chr17	-	1567	5	FSM	ENSMUSG00000067203.9	ENSMUST00000235582.2	1567	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	6.10327780786685	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGAGAACCTTCCAGAA	3644	False	NA	NA	False	AATAAA	-5	NA	34197801	34193632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34194054_34194470_34194588_34194714_34194990_34196844_34197498_34197700
transcript_57665.known	chr17	-	1570	8	FSM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.0698836361489	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTATGCTGTGTGTATCTG	NA	False	NA	-4	True	AATAAA	-32	NA	34219263	34214990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
transcript_57667.known	chr17	-	1619	8	FSM	ENSMUSG00000061232.17	ENSMUST00000025181.18	1619	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.3196045170126	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATGATAGATGAATAAA	NA	False	NA	-40	True	NA	NA	NA	34219321	34215026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
transcript_57669.nic	chr17	-	1839	7	NIC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	-13	0	intron_retention	FALSE	canonical	3	37	junction_6	25.5907969568923	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	-20	True	AATAAA	-16	NA	34219334	34215006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218978_34219167
transcript_5767.known	chr1	+	1914	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192850.6	1914	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	49.9095181303126	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTTCCAATTGAAG	NA	False	NA	6	True	AATAAA	-12	NA	160898461	160913894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160907437_160907581_160910477_160911021_160913557
transcript_57671.known	chr17	-	2034	7	FSM	ENSMUSG00000024325.9	ENSMUST00000025183.9	2034	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.5764535535124	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTAAGTAGTGAAACCCTG	NA	False	NA	NA	False	ATTAAA	-26	NA	34243654	34239765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34240458_34240656_34240931_34241269_34241660_34241952_34242169_34242266_34242428_34243262_34243393_34243483
transcript_57673.nic	chr17	-	2052	6	NIC	ENSMUSG00000024325.9	novel	2034	7	NA	NA	-17	0	intron_retention	FALSE	canonical	3	78	junction_2	4.01995024844836	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	2	True	NA	NA	NA	34243671	34240057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_34240458_34240656_34240931_34241269_34242169_34242266_34242428_34243262_34243393_34243483
transcript_57675.nic	chr17	-	2098	6	NIC	ENSMUSG00000024325.9	novel	2034	7	NA	NA	-17	0	intron_retention	FALSE	canonical	3	63	junction_2	9.32523458149981	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	2	True	NA	NA	NA	34243671	34240057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_34240458_34240656_34241660_34241952_34242169_34242266_34242428_34243262_34243393_34243483
transcript_57676.nic	chr17	-	2391	5	NIC	ENSMUSG00000024325.9	novel	2034	7	NA	NA	-17	0	intron_retention	FALSE	canonical	3	80	junction_2	3.11247489949718	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	2	True	NA	NA	NA	34243671	34240057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_34240458_34240656_34242169_34242266_34242428_34243262_34243393_34243483
transcript_57679.known	chr17	-	965	9	FSM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_8	37.2237743250198	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34247030	34245006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246975
transcript_5768.known	chr1	+	1756	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192150.6	1756	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	51.3754805330325	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTTCCAATTGAAG	NA	False	NA	6	True	AATAAA	-12	NA	160898519	160913894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160907437_160907581_160910477_160911021_160913557
transcript_57680.nic	chr17	-	1152	8	ISM	ENSMUSG00000073422.12	ENSMUST00000045467.14	965	9	-26	0	-22	0	intron_retention	FALSE	canonical	3	114	junction_7	29.9400762067385	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34247056	34245006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596
transcript_57683.known	chr17	-	1133	8	FSM	ENSMUSG00000073422.12	ENSMUST00000237759.2	1133	8	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_7	39.6227104533936	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34247028	34245006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246975
transcript_57684.known	chr17	-	1550	8	FSM	ENSMUSG00000024327.17	ENSMUST00000169397.9	1550	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	197.419371296905	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGAGGTGACCTGTCCT	NA	False	NA	-73	True	NA	NA	NA	34250636	34247769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797_34250237_34250521
transcript_57688.known	chr17	-	728	7	FSM	ENSMUSG00000073422.12	ENSMUST00000174399.8	728	7	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_6	32.3389170436419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGTCAGTGGTATGAGG	NA	False	NA	NA	False	NA	NA	NA	34246837	34245381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596
transcript_5769.known	chr1	+	1910	5	FSM	ENSMUSG00000026708.17	ENSMUST00000111620.10	1910	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	18.1710621593786	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGTTATTTATTCTGTT	NA	False	NA	20	True	AATAAA	-26	NA	160898336	160913908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477_160911021_160913557
transcript_57691.known	chr17	-	2320	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTTGTCTTTATGTG	NA	False	NA	-2	True	AATAAA	-26	NA	34250594	34247242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
transcript_57692.nic	chr17	-	1668	7	NIC	ENSMUSG00000024327.17	novel	1550	8	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	218.983763984659	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250670	34247246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34250521
transcript_57695.known	chr17	-	1293	6	FSM	ENSMUSG00000073422.12	ENSMUST00000170644.8	1293	6	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_4	17.6748408762286	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTCCGGTTCTTCTTGT	NA	False	NA	-4	True	AATAAA	-20	NA	34247020	34245009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34246076_34246176_34246270_34246379
transcript_57696.known	chr17	-	2433	6	FSM	ENSMUSG00000024327.17	ENSMUST00000170491.8	2433	6	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_4	31.8282893036996	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250622	34247246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539
transcript_57697.known	chr17	-	716	7	FSM	ENSMUSG00000073422.12	ENSMUST00000114303.4	716	7	0	0	0	0	multi-exon	TRUE	canonical	2	13	junction_6	60.2699943771544	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTGAGCATGGATTG	NA	False	NA	NA	False	NA	NA	NA	34247034	34245642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34245680_34245824_34245910_34245989_34246076_34246176_34246270_34246379_34246497_34246596_34246815_34246954
transcript_5770.known	chr1	+	1997	5	FSM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	42.0200844834943	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTCTTGTCTTTGTTG	NA	False	NA	12	True	NA	NA	NA	160898535	160914294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477_160911021_160913557
transcript_57703.known	chr17	+	2627	10	FSM	ENSMUSG00000039656.18	ENSMUST00000044858.16	2627	10	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	51.2967642711639	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCATTTTCTGGACTGAG	NA	False	NA	19	True	CATAAA	-19	NA	34250785	34257371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255834_34255939_34256140_34256247_34256357
transcript_57704.known	chr17	+	2577	10	FSM	ENSMUSG00000039656.18	ENSMUST00000174299.9	2577	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_7	37.5838157971825	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTTCTGGACTGAGAT	NA	False	NA	21	True	CATAAA	-21	NA	34250825	34257373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
transcript_57710.known	chr17	+	2502	10	FSM	ENSMUSG00000039656.18	ENSMUST00000173354.9	2502	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	72.5503656472905	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCCATTTTCTGGACTG	NA	False	NA	17	True	CATAAA	-17	NA	34251169	34257369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34251459_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255834_34255939_34256140_34256247_34256357
transcript_57711.known	chr17	+	2283	10	FSM	ENSMUSG00000039656.18	ENSMUST00000116612.3	2283	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	64.8690989609074	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGCCATTTTCTGGAC	NA	False	NA	15	True	CATAAA	-15	NA	34251374	34257367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34251459_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
transcript_5772.known	chr1	+	4883	4	FSM	ENSMUSG00000026708.17	ENSMUST00000028035.14	4883	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	20.7417989148054	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGCTGGTCTTGTCTTT	NA	False	NA	8	True	NA	NA	NA	160898282	160914290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477
transcript_57733.known	chr17	+	939	1	FSM	ENSMUSG00000039656.18	ENSMUST00000173554.9	939	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAAGGCTCACTTTCTC	NA	False	NA	NA	False	ATTAAA	-16	NA	34250789	34251728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34250800_34251700
transcript_57734.known	chr17	+	1088	5	FSM	ENSMUSG00000024334.10	ENSMUST00000025192.8	1088	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.14142842854285	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGTGTGTCCTTTTCACG	3765	False	NA	NA	False	ACTAAA	-16	NA	34311313	34314208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34311503_34312806_34313056_34313281_34313564_34313656_34313793_34313976
transcript_57741.known	chr17	-	4520	14	FSM	ENSMUSG00000024335.21	ENSMUST00000154232.9	4520	14	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_13	158.425425309877	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	8283	False	NA	-16	True	AATAAA	-16	NA	34339385	34331003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335571_34335664_34335881_34336186_34337579_34338875_34339168
transcript_57745.nic	chr17	-	4867	14	NIC	ENSMUSG00000024335.21	novel	4520	14	NA	NA	-91	0	intron_retention	FALSE	canonical	3	88	junction_10	145.754555786584	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	5969	False	NA	-16	True	AATAAA	-16	NA	34341699	34331003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335571_34335664_34335881_34336186_34337579_34338875_34341135
transcript_57754.known	chr17	-	4483	13	FSM	ENSMUSG00000024335.21	ENSMUST00000114242.9	4483	13	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_12	124.818423675709	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTTTTCTTAGTGAGAT	6947	False	NA	-9	True	AATAAA	-23	NA	34340721	34330996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579_34338875_34340456
transcript_57755.known	chr17	-	4657	13	FSM	ENSMUSG00000024335.21	ENSMUST00000025193.14	4657	13	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_12	100.678634774216	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGTTTTCTTAGTGAGAT	6094	False	NA	-9	True	AATAAA	-23	NA	34341574	34330996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579_34338875_34341135
transcript_57771.nic	chr17	-	3490	11	NIC	ENSMUSG00000024335.21	novel	4520	14	NA	NA	-7	0	intron_retention	FALSE	canonical	3	88	junction_7	147.108803271592	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAAAAGAAGAAACGGA	6053	False	NA	8	True	NA	NA	NA	34341615	34332729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335571_34335664_34335881_34336186_34337579_34338875_34341135
transcript_57779.nic	chr17	-	3482	10	ISM	ENSMUSG00000024335.21	ENSMUST00000025193.14	4657	13	-125	1733	-91	0	5prime_fragment	FALSE	canonical	3	100	junction_9	101.349535741718	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAAAAGAAGAAACGGA	5969	False	NA	8	True	NA	NA	NA	34341699	34332729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579_34338875_34341135
transcript_5779.known	chr1	-	4072	12	FSM	ENSMUSG00000026705.17	ENSMUST00000111611.8	4072	12	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	12.7525722571391	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTGGATTTTTT	NA	False	NA	3	True	AATAAA	-37	NA	160959081	160915944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160925967_160926711_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
transcript_57792.known	chr17	+	1108	5	FSM	ENSMUSG00000037649.11	ENSMUST00000236322.2	1108	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	3.83242742918897	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTACTAGACAAGTGTCTA	6798	False	NA	28	True	AATAAA	-36	NA	34354601	34358074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34354733_34356087_34356373_34356876_34357156_34357380_34357510_34357790
transcript_57794.known	chr17	+	1404	6	FSM	ENSMUSG00000079547.5	ENSMUST00000114232.4	1404	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	6.61513416341649	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGTTTGTCCTGGGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	34372045	34379204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34372428_34374406_34374689_34376219_34376505_34378317_34378435_34378602_34378639_34378902
transcript_57795.known	chr17	+	2953	11	FSM	ENSMUSG00000037321.18	ENSMUST00000170086.8	2953	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.91024295920343	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCCCGTTTCTTAGCT	6991	False	NA	NA	False	AATAAA	-20	NA	34406526	34416199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34407380_34408151_34408267_34408403_34408535_34409536_34409743_34410302_34410501_34411810_34411940_34412101_34412291_34412458_34412633_34412854_34413018_34413817_34413955_34415541
transcript_57796.known	chr17	+	3911	9	FSM	ENSMUSG00000037321.18	ENSMUST00000166853.8	3911	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.34273819151005	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCCCGTTTCTTAGCT	7172	False	NA	NA	False	AATAAA	-20	NA	34406707	34416199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34407380_34408151_34409743_34410302_34410501_34411810_34411940_34412101_34412291_34412458_34412633_34412854_34413018_34413817_34413955_34415541
transcript_57797.known	chr17	-	1352	6	FSM	ENSMUSG00000096727.4	ENSMUST00000174576.4	1352	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.70944739819828	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCAAAGTCTGCGAGACT	9780	False	NA	NA	False	NA	NA	NA	34406738	34400960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34401326_34402062_34402205_34402588_34402719_34403255_34403388_34404703_34404772_34406223
transcript_57798.known	chr17	+	3442	12	FSM	ENSMUSG00000024339.13	ENSMUST00000025197.6	3442	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.62221910942836	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTTATGGTTACTACT	5146	False	NA	NA	False	AATAAA	-25	NA	34422500	34435295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34423598_34424260_34424759_34424843_34424959_34427727_34427859_34428063_34428270_34430843_34431042_34431203_34431333_34432988_34433178_34433296_34433471_34433619_34433780_34434307_34434445_34434887
transcript_57799.known	chr17	+	1212	6	FSM	ENSMUSG00000073421.7	ENSMUST00000040828.7	1212	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	17.3735431043872	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCTTTGATAATTGCTG	NA	False	NA	12	True	NA	NA	NA	34482182	34488393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34482380_34483734_34484008_34486309_34486592_34486896_34487008_34487434_34487459_34488068
transcript_57801.nic	chr17	+	1232	5	ISM	ENSMUSG00000073421.7	ENSMUST00000040828.7	1212	6	1326	9	1204	0	3prime_fragment	FALSE	canonical	3	50	junction_2	5.35607132140714	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGATTTGGCTTTGA	NA	False	NA	3	True	NA	NA	NA	34483508	34488384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_34484008_34486309_34486592_34486896_34487008_34487434_34487459_34488068
transcript_57802.known	chr17	-	1128	5	FSM	ENSMUSG00000036594.16	ENSMUST00000040655.14	1128	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTTGGTTTTTCTTGT	NA	False	NA	NA	False	AATAAA	-28	NA	34506797	34501717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34501998_34502128_34502304_34502548_34502831_34503261_34503511_34506655
transcript_57804.known	chr17	+	1669	6	FSM	ENSMUSG00000060586.12	ENSMUST00000235530.2	1669	6	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_2	11.7064085013295	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTGTCAATTAGAGTAT	NA	False	NA	NA	False	AATAAA	-16	NA	34524840	34535648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
transcript_57805.known	chr17	+	1082	6	FSM	ENSMUSG00000060586.12	ENSMUST00000236232.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	73.665731517443	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTTCATAGAGTTTCA	NA	False	NA	12	True	AATAAA	-16	NA	34524899	34535173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34525022_34528617_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
transcript_5781.known	chr1	-	4817	11	FSM	ENSMUSG00000026705.17	ENSMUST00000140905.8	4817	11	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	13.23064624272	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTGGATTTTTT	NA	False	NA	3	True	AATAAA	-37	NA	160959081	160915944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
transcript_57814.known	chr17	+	6591	30	FSM	ENSMUSG00000015468.15	ENSMUST00000015612.14	6591	30	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_11	11.3350235386032	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTGAGGGACTAAAGGG	NA	False	NA	14	True	AATAAA	-23	NA	34783241	34807477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34783484_34784274_34784357_34784446_34784743_34786315_34786664_34787137_34787261_34787366_34787604_34787690_34787847_34789008_34789204_34790710_34790825_34791469_34791584_34791651_34791775_34792722_34792883_34794036_34794183_34794380_34794534_34795382_34795501_34795742_34795831_34796391_34796543_34796921_34797107_34799893_34800147_34800352_34800466_34801372_34801897_34802323_34802708_34802802_34802979_34803385_34803606_34803754_34803825_34803964_34804104_34804878_34805184_34805500_34805649_34806090_34806189_34806347
transcript_5782.known	chr1	-	4182	8	FSM	ENSMUSG00000026705.17	ENSMUST00000148952.8	4182	8	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	11.5387545750335	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAACAAAACATG	NA	False	NA	NA	False	NA	NA	NA	160959081	160924014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
transcript_57822.known	chr17	+	3068	9	FSM	ENSMUSG00000034673.15	ENSMUST00000038149.13	3068	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	5.02338282435253	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTAGTTGAGATTTTTTT	NA	False	NA	7	True	AATAAA	-20	NA	34811236	34816374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34811749_34812545_34812620_34812840_34813089_34813211_34813403_34813555_34813692_34813774_34813929_34814238_34814328_34814601_34814689_34814797
transcript_57828.known	chr17	+	1343	4	FSM	ENSMUSG00000034786.18	ENSMUST00000038244.15	1343	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	3.29983164553722	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGACTGGTATCTGGGG	NA	False	NA	5	True	AATAAA	-18	NA	34808779	34810728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34809235_34809434_34809538_34809715_34809916_34810143
transcript_57829.known	chr17	+	1019	4	FSM	ENSMUSG00000034786.18	ENSMUST00000150924.2	1019	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.92160768674447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGACTGGTATCTGGGG	NA	False	NA	5	True	AATAAA	-18	NA	34809065	34810728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34809235_34809434_34809538_34809753_34809916_34810143
transcript_57831.known	chr17	-	1238	6	FSM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	0	0	0	0	multi-exon	FALSE	canonical	3	1022	junction_5	40.2124358874217	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	795	False	NA	-23	True	NA	NA	NA	34822664	34820064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34821264_34821284_34822307
transcript_57835.known	chr17	-	850	4	FSM	ENSMUSG00000015478.14	ENSMUST00000174475.8	850	4	0	0	0	0	multi-exon	FALSE	canonical	3	1022	junction_3	37.7211994624891	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAATCCTTTGCTTTCCC	1109	False	NA	NA	False	NA	NA	NA	34822350	34820287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34820963_34821058_34821172_34821264_34821284_34822307
transcript_57836.known	chr17	-	763	3	FSM	ENSMUSG00000015478.14	ENSMUST00000174045.2	763	3	0	0	0	0	multi-exon	FALSE	canonical	3	1022	junction_2	33	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGTGTTCAATGCCCATG	824	False	NA	NA	False	NA	NA	NA	34822635	34820755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34821172_34821264_34821284_34822307
transcript_57838.known	chr17	-	1729	9	FSM	ENSMUSG00000015474.17	ENSMUST00000064953.15	1729	9	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_8	20.0249843945008	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGCTTGGCTTATTCCC	3988	False	NA	-1	True	AATAAA	-16	NA	34846351	34835636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846220
transcript_57839.known	chr17	-	1710	9	FSM	ENSMUSG00000015474.17	ENSMUST00000171121.9	1710	9	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_2	7.8700381193486	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCTTGGCTTATTCCCA	3930	False	NA	0	True	AATAAA	-17	NA	34846409	34835635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846298
transcript_5784.known	chr1	-	2992	3	FSM	ENSMUSG00000026705.17	ENSMUST00000145736.3	2992	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_2	11	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAAACAAAAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	160959012	160934517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_160937366_160957958_160958023_160958932
transcript_57840.known	chr17	-	1139	9	FSM	ENSMUSG00000015474.17	ENSMUST00000166040.9	1139	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_8	20.3312413541328	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCCACCAGGGCTCCCC	3326	False	NA	NA	False	NA	NA	NA	34847013	34836202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846906
transcript_57841.nic	chr17	-	1755	9	NIC	ENSMUSG00000015474.17	novel	1729	9	NA	NA	-235	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_8	19.4148783153539	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGCTTGGCTTATTCCC	9838	False	NA	-1	True	AATAAA	-16	NA	34847248	34835636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34847091
transcript_57843.known	chr17	+	1105	7	FSM	ENSMUSG00000034254.18	ENSMUST00000173973.8	1105	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	44.7688507781917	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTTCTTCCTCCCTGTA	NA	False	NA	NA	False	NA	NA	NA	34824834	34831417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34825146_34829418_34829619_34829845_34829901_34830247_34830424_34830578_34830675_34830764_34830841_34831226
transcript_57844.known	chr17	+	2190	7	FSM	ENSMUSG00000034254.18	ENSMUST00000037489.15	2190	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	5.07991688470939	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTGATATCCATATCTT	NA	False	NA	44	True	AATAAA	-44	NA	34824834	34832423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226
transcript_57849.nic	chr17	+	2431	6	NIC	ENSMUSG00000034254.18	novel	2190	7	NA	NA	-4	0	intron_retention	FALSE	canonical	3	118	junction_1	5.38887743412299	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGGTTCTCTGCGGCCT	NA	False	NA	13	True	AATAAA	-13	NA	34824830	34832392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_34825146_34829418_34829619_34829845_34830424_34830578_34830675_34830764_34830841_34831226
transcript_57851.known	chr17	-	1750	8	FSM	ENSMUSG00000015474.17	ENSMUST00000171376.8	1750	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	8.14160391358572	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGTGGCTTGGCTTATTCC	4217	False	NA	-2	True	AATAAA	-15	NA	34846122	34835637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778
transcript_57852.known	chr17	+	257	2	FSM	ENSMUSG00000033739.9	ENSMUST00000174796.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAACGCCCAGCAAATCTT	7436	False	NA	NA	False	AATGAA	-35	NA	34863814	34864296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34863928_34864152
transcript_57853.known	chr17	+	1270	2	FSM	ENSMUSG00000033739.9	ENSMUST00000036720.9	1270	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTGGTCTGTGTTGTG	7359	False	NA	4	True	ATTAAA	-17	NA	34863737	34865298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34863928_34864218
transcript_57856.known	chr17	+	2566	18	FSM	ENSMUSG00000015461.16	ENSMUST00000015605.15	2566	18	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_9	22.8588265568706	1678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGGCCACCTTCCTAGTG	9741	False	NA	11	True	AATAAA	-24	NA	34866119	34874048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34866291_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
transcript_57857.known	chr17	+	2315	18	FSM	ENSMUSG00000015461.16	ENSMUST00000173984.2	2315	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.9084469989445	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCCCGAGGGTACCTC	9806	False	NA	NA	False	AATATA	-31	NA	34866184	34873853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_34866300_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
transcript_57861.known	chr17	-	1120	7	FSM	ENSMUSG00000061207.12	ENSMUST00000077477.12	1120	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	4.59770474137791	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5573	False	NA	-4	True	AATAAA	-16	NA	35055921	35042968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
transcript_57862.known	chr17	-	3951	28	FSM	ENSMUSG00000040356.17	ENSMUST00000046022.16	3951	28	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_20	16.8071446039882	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTGGAGTATGGTAACT	5305	False	NA	-23	True	AATAAA	-13	NA	35069186	35058219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35065972_35066118_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
transcript_57869.nic	chr17	-	4087	27	NIC	ENSMUSG00000040356.17	novel	3951	28	NA	NA	6	0	intron_retention	FALSE	canonical	3	90	junction_19	16.3224262177268	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTGCTTGGAGTATGG	5311	False	NA	-28	True	AATAAA	-8	NA	35069180	35058224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
transcript_57871.known	chr17	-	3995	27	FSM	ENSMUSG00000040356.17	ENSMUST00000174887.8	3995	27	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_19	16.7468534534615	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTGCTTGGAGTATGG	5323	False	NA	-28	True	AATAAA	-8	NA	35069168	35058224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35065972_35066118_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
transcript_5789.known	chr1	+	3714	7	FSM	ENSMUSG00000044835.16	ENSMUST00000111608.8	3714	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	35.5547308932143	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATGTTACACGTTTT	NA	False	NA	6	True	NA	NA	NA	160970281	160998068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281
transcript_57895.known	chr17	+	1447	7	FSM	ENSMUSG00000040482.17	ENSMUST00000180043.8	1447	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	19.7434940057619	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCTGTGTCTGAATG	2976	False	NA	30	True	AATAAA	-19	NA	35055994	35058162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35056193_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
transcript_57897.known	chr17	+	1519	7	FSM	ENSMUSG00000040482.17	ENSMUST00000046244.15	1519	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	48.3439643480847	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAGCACTCTGGTTTGC	2976	False	NA	77	True	NA	NA	NA	35055994	35058209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35056218_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
transcript_579.known	chr1	-	2181	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGTTTCTATGACAATG	NA	False	NA	NA	False	TATAAA	-21	NA	16689713	16640005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
transcript_57904.known	chr17	+	1381	11	FSM	ENSMUSG00000024369.17	ENSMUST00000165953.3	1381	11	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	101.735146335964	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTATTGTAACTGCTTT	4	True	NA	NA	False	AAAAAG	-13	NA	35069383	35075348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
transcript_57907.known	chr17	+	1399	11	FSM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	84.0802592764794	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCGTCAGCCTCTAG	-6	True	NA	30	True	AGTAAA	-20	NA	35069373	35075230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
transcript_57910.known	chr17	+	1607	11	FSM	ENSMUSG00000024369.17	ENSMUST00000097343.11	1607	11	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_1	144.013228559046	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGTTATTGTAACTGC	32	False	NA	NA	False	AAAAAG	-10	NA	35069366	35075345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
transcript_57922.known	chr17	-	2641	18	FSM	ENSMUSG00000024371.15	ENSMUST00000025230.15	2641	18	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_13	3.65842630716852	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCTGTCTTATGTCTT	NA	False	NA	0	True	AATAAA	-18	NA	35101076	35081580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35082008_35082154_35082205_35082320_35082451_35082599_35082692_35082838_35082916_35083020_35083187_35083283_35083402_35083487_35083583_35083704_35083846_35085493_35085584_35091342_35091484_35092437_35092577_35094863_35094998_35095129_35095232_35095309_35095487_35098857_35099044_35100547_35100773_35100925
transcript_57924.known	chr17	-	535	4	FSM	ENSMUSG00000024371.15	ENSMUST00000174279.2	535	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGGCTGGGTGTTGA	4773	False	NA	NA	False	AATAAA	-9	NA	35117241	35112328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35112451_35112586_35112677_35114382_35114544_35117079
transcript_57925.known	chr17	+	1858	2	FSM	ENSMUSG00000049823.10	ENSMUST00000052778.10	1858	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAAGTTGAAAGTTTTGG	2760	False	NA	26	True	CATAAA	-34	NA	35113534	35115843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35113746_35114196
transcript_57926.nic	chr17	+	3904	28	NIC	ENSMUSG00000013787.16	novel	3882	28	NA	NA	8	0	combination_of_known_junctions	TRUE	canonical	3	35	junction_14	98.9641965990974	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	6678	False	NA	19	True	AATAAA	-20	NA	35117452	35133027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35117517_35118162_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125928_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
transcript_57927.known	chr17	+	3882	28	FSM	ENSMUSG00000013787.16	ENSMUST00000114033.9	3882	28	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_1	79.9703820344975	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	6670	False	NA	19	True	AATAAA	-20	NA	35117444	35133027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35117517_35118162_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
transcript_57934.known	chr17	+	3746	27	FSM	ENSMUSG00000013787.16	ENSMUST00000078061.13	3746	27	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_9	83.6524314646073	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTCTGGTGATTGTT	6700	False	NA	15	True	AATAAA	-16	NA	35117474	35133023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35117517_35118162_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
transcript_57950.known	chr17	+	3934	26	FSM	ENSMUSG00000013787.16	ENSMUST00000097342.10	3934	26	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_8	74.3555135817109	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAACTGTCTGGTGATT	7155	False	NA	12	True	AATAAA	-13	NA	35117929	35133020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
transcript_57951.known	chr17	+	4026	27	FSM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_9	70.6987525311972	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	7172	False	NA	19	True	AATAAA	-20	NA	35117946	35133027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
transcript_57952.known	chr17	+	2261	21	FSM	ENSMUSG00000007034.16	ENSMUST00000007249.15	2261	21	0	0	0	0	multi-exon	TRUE	non_canonical	1	2	junction_1	7.56240702422185	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTATGGCTTTATTTT	1279	False	NA	NA	False	ATTAAA	-23	NA	35133445	35149332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35133497_35135622_35135672_35136293_35136368_35136492_35136572_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
transcript_57954.known	chr17	+	2246	18	FSM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	0	0	0	0	multi-exon	FALSE	non_canonical	1	4	junction_1	7.17888098382546	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAATACCCAGTAAGAAA	120	False	NA	NA	False	ATTAAA	-21	NA	35136694	35149412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35136853_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
transcript_57962.known	chr17	+	2474	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7923	False	NA	NA	False	NA	NA	NA	35150228	35154897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
transcript_57966.nnic	chr17	+	1731	6	NNC	ENSMUSG00000007038.6	novel	2474	6	NA	NA	5	-600	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	56.6427400467174	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTGTGGAGTCTGTGGT	7928	False	NA	13	True	NA	NA	NA	35150233	35154297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_35150386_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
transcript_57969.known	chr17	+	3619	5	FSM	ENSMUSG00000007038.6	ENSMUST00000173269.2	3619	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	25.7001945517928	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGATTCGGGCTGCGTTC	7984	False	NA	NA	False	NA	NA	NA	35150289	35154929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35153162_35153258_35153482_35153580
transcript_57974.nic	chr17	+	3145	4	NIC	ENSMUSG00000007038.6	novel	2474	6	NA	NA	0	-600	intron_retention	FALSE	canonical	3	122	junction_1	26.5120517668642	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTGTGGAGTCTGTGGT	7923	False	NA	13	True	NA	NA	NA	35150228	35154297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35150524_35150891_35151085_35151541_35153482_35153580
transcript_57980.known	chr17	-	579	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTAAATAGACTTTTTCT	6010	False	NA	NA	False	AATAAA	-14	NA	35171444	35169218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
transcript_57982.known	chr17	-	434	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173070.8	434	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	32.4995726467629	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6007	False	NA	NA	False	AATAAA	-16	NA	35171447	35169216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35169452_35170860_35170902_35171111_35171150_35171327
transcript_57985.known	chr17	-	520	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	75.5439533575579	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6030	False	NA	NA	False	AATAAA	-16	NA	35171424	35169216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
transcript_57986.known	chr17	-	691	2	FSM	ENSMUSG00000092203.8	ENSMUST00000172531.2	691	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCCTTTAAGTTCTGTA	6016	False	NA	NA	False	NA	NA	NA	35171438	35170569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35171150_35171327
transcript_57987.known	chr17	-	934	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174039.8	934	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	40	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6044	False	NA	NA	False	AATAAA	-15	NA	35171410	35169217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35169452_35169673_35169824_35170860
transcript_57991.known	chr17	+	840	5	FSM	ENSMUSG00000007050.18	ENSMUST00000114011.11	840	5	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_1	217.150869213089	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	-6	True	NA	26	True	AATAAA	-20	NA	35200855	35204867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35201062_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_57994.known	chr17	+	873	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_1	596.250995806296	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	243	False	NA	26	True	AATAAA	-20	NA	35201104	35204867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_57995.known	chr17	+	653	5	FSM	ENSMUSG00000007050.18	ENSMUST00000172777.8	653	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	713.006442818015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGGATGGAAAGATCTG	273	False	NA	-31	True	AATACA	-2	NA	35201134	35204810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35201211_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_57997.known	chr17	+	521	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174241.8	521	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	766.950237412224	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACTGAATGGATGAGAGA	25	False	NA	NA	False	NA	NA	NA	35200886	35204647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35201062_35204084_35204116_35204224_35204285_35204392
transcript_57999.known	chr17	+	687	5	FSM	ENSMUSG00000007050.18	ENSMUST00000172890.8	687	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	715.149285114653	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGGTTTGTCGTCTG	273	False	NA	24	True	AATAAA	-18	NA	35201134	35204865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35201211_35201616_35201664_35204084_35204116_35204224_35204285_35204392
transcript_58.known	ERCC-00170	+	1007	1	FSM	ERCC-00170A	DQ516773	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00170_+_0_1000
transcript_58018.known	chr17	+	4137	30	FSM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	417.564149877336	2755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTCGCTCTTGTCTGTG	9474	False	NA	10	True	AATAAA	-11	NA	35219962	35235298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
transcript_58026.known	chr17	+	4048	29	FSM	ENSMUSG00000007029.17	ENSMUST00000173584.8	4048	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	416.176527192145	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAGCGCTCTAGA	9538	False	NA	NA	False	NA	NA	NA	35220026	35235006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569
transcript_5807.known	chr1	-	959	6	FSM	ENSMUSG00000026701.16	ENSMUST00000051925.5	959	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	839.164012574419	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATCGCTCGCTATACTA	NA	False	NA	-54	True	NA	NA	NA	161078736	161069167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161076928_161077040_161078591
transcript_5810.known	chr1	-	913	5	FSM	ENSMUSG00000026701.16	ENSMUST00000156678.8	913	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	765.536209137099	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGGCACCAAAACCTT	NA	False	NA	-20	True	ATTAAA	-2	NA	161078739	161069133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078563
transcript_58103.known	chr17	+	819	4	FSM	ENSMUSG00000007029.17	ENSMUST00000174260.8	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	61.0300472445063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCGCAGCTCAAAAAAGAGG	5	False	NA	NA	False	AAAACA	-3	NA	35220292	35223778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35220807_35223180_35223316_35223412_35223552_35223747
transcript_58105.known	chr17	-	665	5	FSM	ENSMUSG00000036185.10	ENSMUST00000174037.8	665	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	14.8218588577816	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246890	35244934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246565_35246772
transcript_58106.known	chr17	-	618	4	FSM	ENSMUSG00000036185.10	ENSMUST00000173211.8	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.54606056566195	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246635	35244934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419
transcript_58108.known	chr17	-	2678	25	FSM	ENSMUSG00000007035.16	ENSMUST00000097338.11	2678	25	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	4.38728434101198	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTTCCTTAGGTCACCC	1789	False	NA	NA	False	AATAAA	-17	NA	35265702	35247580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35247829_35248171_35248246_35248628_35248767_35248853_35248998_35249176_35249252_35249584_35249735_35250123_35250251_35250329_35250520_35250654_35250743_35251316_35251398_35251735_35251846_35252198_35252272_35252565_35252695_35257381_35257445_35258176_35258316_35260445_35260492_35261073_35261157_35262704_35262741_35263000_35263111_35263292_35263415_35264089_35264153_35264269_35264351_35264905_35265030_35265206_35265364_35265675
transcript_5811.known	chr1	-	2387	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	0	0	0	0	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATGTGAGTCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	161078789	161067681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
transcript_58115.known	chr17	+	1466	6	FSM	ENSMUSG00000007041.10	ENSMUST00000007257.10	1466	6	0	0	0	0	multi-exon	TRUE	canonical	3	1084	junction_1	70.1524055182714	777	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	1676	False	NA	NA	False	AATAAA	-41	NA	35268941	35277725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274202_35274385_35277305
transcript_58121.known	chr17	+	1254	7	FSM	ENSMUSG00000007039.13	ENSMUST00000174493.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	164.014989152415	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278076	35281071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280576_35280766
transcript_58122.known	chr17	+	1342	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	False	NA	13	True	AATAAA	-19	NA	35278010	35281067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
transcript_58123.nnic	chr17	+	1317	7	NNC	ENSMUSG00000007039.13	novel	1342	7	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	162.253659434849	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	False	NA	13	True	AATAAA	-19	NA	35277986	35281067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280500_35280602_35280766
transcript_58125.nic	chr17	+	1472	7	NIC	ENSMUSG00000007039.13	novel	682	4	NA	NA	-219	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	154.377693408802	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	False	NA	13	True	AATAAA	-19	NA	35278572	35281067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35278941_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
transcript_58133.known	chr17	+	598	4	FSM	ENSMUSG00000092586.9	ENSMUST00000173207.8	598	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCACCCCCTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	35284363	35288601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35284427_35286302_35286421_35287842_35287954_35288295
transcript_58136.nic	chr17	+	1068	4	NIC	ENSMUSG00000013766.12	novel	1142	3	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	215.629826838084	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295811	35297780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35295936_35296110_35296183_35296812_35296939_35297034
transcript_58137.known	chr17	+	750	4	FSM	ENSMUSG00000013766.12	ENSMUST00000172678.8	750	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	129.208702837266	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAAAGGGACAGAAGTGTC	NA	False	NA	NA	False	NA	NA	NA	35295906	35297526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35295967_35296110_35296183_35296812_35296939_35297034
transcript_5814.known	chr1	-	1294	4	FSM	ENSMUSG00000026701.16	ENSMUST00000192639.6	1294	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	831.771736849854	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078756	161068584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078591
transcript_58142.known	chr17	-	546	3	FSM	ENSMUSG00000073413.10	ENSMUST00000007259.4	546	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	9.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTGATGAACTATTCT	NA	False	NA	NA	False	NA	NA	NA	35293476	35290418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35290736_35293150_35293289_35293385
transcript_58144.known	chr17	+	1142	3	FSM	ENSMUSG00000013766.12	ENSMUST00000013910.5	1142	3	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295912	35297780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35296183_35296812_35296939_35297034
transcript_58149.nnic	chr17	+	2211	21	NNC	ENSMUSG00000007036.16	novel	1945	20	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	48.0332176727731	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTGCTTATGAGATGT	NA	False	NA	32	True	AATAAA	-19	NA	35308189	35321963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546_35310634_35310794_35310984_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320803_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
transcript_5816.known	chr1	-	2558	1	FSM	ENSMUSG00000026701.16	ENSMUST00000194613.2	2558	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAACAA	NA	False	NA	NA	False	ATTAAA	-30	NA	161078732	161076174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_161076200_161078700
transcript_58163.known	chr17	+	1945	20	FSM	ENSMUSG00000007036.16	ENSMUST00000007251.14	1945	20	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	22.1293102285439	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTGCTTATGAGATGT	NA	False	NA	32	True	AATAAA	-19	NA	35308266	35321963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546_35310634_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320803_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
transcript_5817.known	chr1	-	798	3	FSM	ENSMUSG00000040323.14	ENSMUST00000151268.2	798	3	0	0	0	0	multi-exon	FALSE	non_canonical	3	106	junction_1	98.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAACATGGGGGGGCCCCT	NA	False	NA	NA	False	NA	NA	NA	161555058	161553810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_161553876_161554208_161554584_161554700
transcript_58185.known	chr17	+	1824	19	FSM	ENSMUSG00000007036.16	ENSMUST00000173846.8	1824	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	40.9166572376847	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATTAATAAAAAGGTAT	NA	False	NA	1	True	ATTAAA	-17	NA	35308289	35321932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35308433_35309344_35309402_35310546_35310634_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320803_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
transcript_5820.known	chr1	-	6327	24	FSM	ENSMUSG00000040297.13	ENSMUST00000048377.11	6327	24	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_17	25.1317135224534	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAATCTTCGTGTATCT	418	False	NA	NA	False	AATAAA	-14	NA	161704251	161643682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161673128_161673150_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680517_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
transcript_58206.known	chr17	+	574	4	FSM	ENSMUSG00000007036.16	ENSMUST00000173134.8	574	4	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_3	8.17856276425687	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAACAAGAAGAATACAGC	NA	False	NA	NA	False	NA	NA	NA	35308238	35310802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546
transcript_58207.known	chr17	+	509	3	FSM	ENSMUSG00000034482.3	ENSMUST00000037849.3	509	3	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	2.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGGATTTCCATCTGAG	6711	False	NA	NA	False	NA	NA	NA	35327254	35330967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35327397_35329642_35329808_35330765
transcript_58210.known	chr17	-	961	7	FSM	ENSMUSG00000024387.14	ENSMUST00000025246.13	961	7	0	0	0	0	multi-exon	TRUE	canonical	3	826	junction_1	47.9780042195264	402	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTCTCCTACTGTGT	NA	False	NA	-9	True	AATAAA	-15	NA	35340262	35335173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
transcript_58216.nic	chr17	+	1303	3	NIC	ENSMUSG00000092417.4	novel	1518	3	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	24	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4556	False	NA	14	True	AATAAA	-14	NA	35340425	35343790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35340527_35342028_35342636_35343195
transcript_58217.known	chr17	+	1518	3	FSM	ENSMUSG00000092417.4	ENSMUST00000165306.3	1518	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	21.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4589	False	NA	14	True	AATAAA	-14	NA	35340458	35343790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35340775_35342028_35342636_35343195
transcript_58220.known	chr17	+	2142	3	FSM	ENSMUSG00000043311.8	ENSMUST00000061859.7	2142	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTCCACTCAGTGTCCT	2180	False	NA	23	True	AATAAA	-40	NA	35345361	35347831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35345427_35345618_35345762_35345897
transcript_58221.known	chr17	-	1013	6	FSM	ENSMUSG00000024391.8	ENSMUST00000025249.7	1013	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	5.65685424949238	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGGGTTTTGTCTGCA	NA	False	NA	NA	False	AATAAA	-20	NA	35351026	35347972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35348112_35349055_35349155_35349383_35349483_35349814_35349895_35350170_35350326_35350585
transcript_58231.nic	chr17	+	3940	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	276	junction_13	131.268238351857	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8497	False	NA	15	True	AATAAA	-16	NA	35354162	35366281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_58233.nic	chr17	+	3955	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	434	junction_1	113.385261828864	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8479	False	NA	15	True	AATAAA	-16	NA	35354144	35366281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_58241.nic	chr17	+	3822	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	276	junction_13	138.874711880889	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8772	False	NA	15	True	AATAAA	-16	NA	35354437	35366281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_58243.nic	chr17	+	3819	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	346	junction_1	122.303229720233	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8772	False	NA	15	True	AATAAA	-16	NA	35354437	35366281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_58254.nic	chr17	+	3776	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	160	junction_24	169.610455447836	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGCCTAGTAGTTTC	8515	False	NA	16	True	AATAAA	-17	NA	35354180	35366282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
transcript_58256.nic	chr17	+	3799	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	160	junction_24	156.645809781884	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGCCTAGTAGTTTC	8489	False	NA	16	True	AATAAA	-17	NA	35354154	35366282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
transcript_58259.known	chr17	+	3858	25	FSM	ENSMUSG00000024392.18	ENSMUST00000025250.14	3858	25	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_11	162.018431736091	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGAGTACCTTTTCTTTA	8488	False	NA	32	True	AATAAA	-33	NA	35354153	35366298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_58260.nic	chr17	+	3833	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	186	junction_11	147.653539437202	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8493	False	NA	15	True	AATAAA	-16	NA	35354158	35366281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_58279.nic	chr17	+	3711	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	186	junction_11	154.706302168191	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8772	False	NA	15	True	AATAAA	-16	NA	35354437	35366281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_58301.known	chr17	+	3787	24	FSM	ENSMUSG00000024392.18	ENSMUST00000166426.9	3787	24	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	208.682200653446	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8488	False	NA	15	True	AATAAA	-16	NA	35354153	35366281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_5833.nic	chr1	-	750	2	ISM	ENSMUSG00000040297.13	ENSMUST00000048377.11	6327	24	-267	47801	-267	-11086	5prime_fragment	FALSE	canonical	3	137	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACCTTAAATGGAATTGA	151	False	NA	5	True	NA	NA	NA	161704518	161691483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_161691595_161703879
transcript_5834.known	chr1	+	2196	2	FSM	ENSMUSG00000026698.9	ENSMUST00000028021.7	2196	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTGACTACATATGAT	NA	False	NA	NA	False	AAAACA	-10	NA	161796756	161799899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_161796849_161797795
transcript_5835.known	chr1	+	704	2	FSM	ENSMUSG00000026698.9	ENSMUST00000160881.2	704	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTCTGTCAGTACAGACA	NA	False	NA	NA	False	NA	NA	NA	161796867	161798441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_161796939_161797808
transcript_58351.known	chr17	+	3599	23	FSM	ENSMUSG00000024392.18	ENSMUST00000172571.8	3599	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	266.293354829681	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGCCTAGTAGTTTC	8515	False	NA	16	True	AATAAA	-17	NA	35354180	35366282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35358210_35358286_35359208_35359448_35359794_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
transcript_58352.known	chr17	-	6888	31	FSM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_20	122.598119434553	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGAAAGTCATGGGTGG	NA	False	NA	-1	True	AATAAA	-21	NA	35383873	35368051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
transcript_58359.nic	chr17	-	1823	12	ISM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	-21	10046	-21	-1989	5prime_fragment	FALSE	canonical	3	176	junction_1	19.8648324998711	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCAGCTCCAGCTCTG	NA	False	NA	NA	False	AAGAAA	-1	NA	35383894	35378097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
transcript_58360.known	chr17	-	415	4	FSM	ENSMUSG00000073412.7	ENSMUST00000097336.5	415	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGCTTCTCTATATGTGT	NA	False	NA	NA	False	AGTAAA	-22	NA	35407415	35404070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35404287_35405560_35405581_35405921_35406018_35407332
transcript_58363.nnic	chr17	+	1131	3	NNC	ENSMUSG00000024399.6	novel	1160	3	NA	NA	-7548	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCGGCCCTTGCCAGTGT	5183	False	NA	NA	False	AATAAA	-12	NA	35405866	35415278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_35406083_35414025_35414342_35414679
transcript_58364.known	chr17	-	1447	4	FSM	ENSMUSG00000042419.9	ENSMUST00000048994.7	1447	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	9.89949493661167	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGTCTCCTCTGTTT	NA	False	NA	-1	True	NA	NA	NA	35454768	35439150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35439953_35440112_35440335_35453927_35454208_35454625
transcript_58365.nnic	chr17	-	1479	4	NNC	ENSMUSG00000042419.9	novel	1447	4	NA	NA	-742	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	32.4995726467629	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGTCTCCTCTGTTT	NA	False	NA	-1	True	NA	NA	NA	35455510	35439150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_35439953_35440112_35440335_35453927_35454208_35455335
transcript_58367.known	chr17	+	567	2	FSM	ENSMUSG00000081650.2	ENSMUST00000118793.2	567	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGTCCTGAGTTCAATT	616	False	NA	NA	False	NA	NA	NA	35439809	35443110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35439964_35442697
transcript_58376.known	chr17	+	1739	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	0	0	0	0	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	2774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTGTTCATGGCTTGA	NA	False	NA	37	True	AATGAA	-26	NA	35460721	35472683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
transcript_5838.known	chr1	-	4541	8	FSM	ENSMUSG00000026694.20	ENSMUST00000028017.16	4541	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_6	17.6704526812185	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGCTTTTTTGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	162376120	162359695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373336_162374097_162375672
transcript_5839.known	chr1	-	2482	8	FSM	ENSMUSG00000026694.20	ENSMUST00000159817.9	2482	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	33.4651814181089	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAAGTTGGTTTATCT	NA	False	NA	-11	True	NA	NA	NA	162376091	162361247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373814_162374097_162375672
transcript_58390.nic	chr17	+	3908	10	NIC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-19	0	intron_retention	FALSE	canonical	3	2129	junction_1	153.609975884895	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAACCGTGTCTGTGGTG	NA	False	NA	10	True	NA	NA	NA	35460702	35472656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
transcript_584.nic	chr1	-	1553	6	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	-7	-351	combination_of_known_junctions	FALSE	canonical	3	127	junction_3	123.769139933992	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGGACATTTTTATTT	NA	False	NA	NA	False	AATACA	-32	NA	16689515	16640356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_16641507_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
transcript_58404.known	chr17	+	2848	10	FSM	ENSMUSG00000019432.16	ENSMUST00000173731.8	2848	10	0	0	0	0	multi-exon	FALSE	canonical	3	2134	junction_3	141.063246475377	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAACCGTGTCTGTGGTG	NA	False	NA	10	True	NA	NA	NA	35460845	35472656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
transcript_58405.known	chr17	+	2102	8	FSM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	6.54341856605645	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCACTATGCTGTGT	1719	False	NA	26	True	AATAAA	-25	NA	35481705	35486475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663_35485703_35485841
transcript_58407.known	chr17	+	1744	7	FSM	ENSMUSG00000073411.13	ENSMUST00000172503.3	1744	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	18.315900802915	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTGAAAGTGACCTTGA	2085	False	NA	NA	False	NA	NA	NA	35482071	35486329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485442_35485491_35485663
transcript_5842.nnic	chr1	-	2320	7	NIC	ENSMUSG00000026694.20	novel	2482	8	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_5	33.2536547698979	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAAGTTGGTTTATCT	NA	False	NA	-11	True	NA	NA	NA	162376111	162361247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162373796_162374097_162375672
transcript_58421.known	chr17	-	3122	2	FSM	ENSMUSG00000079505.3	ENSMUST00000113886.3	3122	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACGCTATGTGTCGTAG	NA	False	NA	NA	False	NA	NA	NA	35599268	35595996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35598714_35598863
transcript_58422.known	chr17	+	1473	7	FSM	ENSMUSG00000067235.15	ENSMUST00000068291.7	1473	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	3.16227766016838	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGTGTCAGTATGCTGT	NA	False	NA	NA	False	AATAAA	-23	NA	35780985	35785460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35781077_35781272_35781543_35781722_35781999_35783979_35784256_35784382_35784487_35784664_35784698_35785037
transcript_58426.known	chr17	+	1362	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	0	0	0	0	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	3645	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGAATTTTGTTTTCCT	3036	False	NA	0	True	AATAAA	-20	NA	35816914	35821669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
transcript_58431.known	chr17	-	1665	4	FSM	ENSMUSG00000050410.16	ENSMUST00000161012.8	1665	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	21.6846079563875	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9333	False	NA	-5	True	AATAAA	-20	NA	35827721	35823630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35824082_35825370_35825918_35826774_35827328_35827607
transcript_58440.known	chr17	+	2748	19	FSM	ENSMUSG00000040312.15	ENSMUST00000045956.14	2748	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	38.8088461978693	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTGCGATTTCCCCTGA	4508	False	NA	30	True	AATAAA	-32	NA	35828072	35841912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35828127_35828687_35828837_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_58445.nnic	chr17	+	2642	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-95	0	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	28.0148255362583	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	4337	False	NA	20	True	AATAAA	-22	NA	35827901	35841902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_35828009_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_58447.nnic	chr17	+	2705	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-92	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	32.5386116125864	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	4340	False	NA	20	True	AATAAA	-22	NA	35827904	35841902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_35828009_35829047_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_58452.known	chr17	+	2656	18	FSM	ENSMUSG00000040312.15	ENSMUST00000164242.9	2656	18	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.5503507751598	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTGGAGATGTTTGAG	4432	False	NA	11	True	AATAAA	-13	NA	35827996	35841893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35828127_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_58455.nnic	chr17	+	2782	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	31.1318215242649	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	4381	False	NA	20	True	AATAAA	-22	NA	35827945	35841902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_35828127_35829047_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_58456.nic	chr17	+	3252	18	NIC	ENSMUSG00000040312.15	novel	3054	18	NA	NA	47	0	intron_retention	FALSE	canonical	3	17	junction_1	29.5544772924118	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	4555	False	NA	20	True	AATAAA	-22	NA	35828119	35841902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_35828837_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_5847.known	chr1	-	1702	1	FSM	ENSMUSG00000026694.20	ENSMUST00000195027.2	1702	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAAAAATTATCAATG	NA	False	NA	NA	False	NA	NA	NA	162376098	162374396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_162374400_162376100
transcript_58477.known	chr17	+	2333	3	FSM	ENSMUSG00000040312.15	ENSMUST00000174827.3	2333	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	38	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCACTTGGCTTTGCCAC	4448	False	NA	NA	False	NA	NA	NA	35828012	35831427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_35828127_35829113_35829181_35829275
transcript_58478.nnic	chr17	+	1498	3	NNC	ENSMUSG00000039269.6	novel	1290	2	NA	NA	-3384	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTCCGCGTCAGTTTC	25	False	NA	NA	False	AATAAA	-23	NA	35874962	35879849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_35875226_35878401_35878518_35878730
transcript_5848.known	chr1	-	3317	2	FSM	ENSMUSG00000026694.20	ENSMUST00000161760.2	3317	2	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTATTTATG	NA	False	NA	NA	False	NA	NA	NA	162376097	162371204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_162374097_162375672
transcript_58480.known	chr17	-	4425	29	FSM	ENSMUSG00000038838.16	ENSMUST00000043674.15	4425	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	44.4260449442414	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGGTCTCGTGAAGCGT	1761	False	NA	NA	False	AATAAA	-37	NA	35978484	35966525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970282_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973123_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864_35976932_35977022_35977145_35977546_35977648_35977735_35977818_35977964
transcript_58509.known	chr17	-	3803	25	FSM	ENSMUSG00000038838.16	ENSMUST00000165787.8	3803	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	47.5613456203903	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGTTAGCATTGAAAGAA	3090	False	NA	NA	False	AATAAA	-16	NA	35977155	35966546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970282_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973123_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864
transcript_5851.known	chr1	+	600	8	FSM	ENSMUSG00000026696.16	ENSMUST00000194810.6	600	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	110.137391007592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATGATCACCTTTCCAAC	NA	False	NA	NA	False	ACTAAA	-38	NA	162398337	162422298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415820_162417033_162417114_162420194_162420247_162422114
transcript_58512.known	chr17	-	1569	14	FSM	ENSMUSG00000001524.15	ENSMUST00000160752.9	1569	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	65.5597654071206	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGCCAGGTCCAGCCCCG	NA	False	NA	-101	True	NA	NA	NA	35984595	35978721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982121_35982250_35982884_35982990_35983577_35983721_35984417
transcript_58513.known	chr17	-	1569	14	FSM	ENSMUSG00000001524.15	ENSMUST00000160734.8	1569	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_13	50.3611806921766	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAATCTACGCGGCT	NA	False	NA	-12	True	AATAAA	-6	NA	35984510	35978632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984425
transcript_58514.known	chr17	-	1679	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCGGCTTCAGACGTCTG	NA	False	NA	-1	True	AATAAA	-17	NA	35984631	35978621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
transcript_5852.known	chr1	+	1461	8	FSM	ENSMUSG00000026696.16	ENSMUST00000135241.8	1461	8	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_7	26.2336440784092	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAAGGCTGCAGGT	NA	False	NA	116	True	AATAAA	-21	NA	162398158	162422934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162422114
transcript_58520.nic	chr17	-	4277	18	NIC	ENSMUSG00000003534.18	novel	3627	18	NA	NA	-394	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	11.600620434428	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGGTGTATTTCC	6337	False	NA	-2	True	AATAAA	-32	NA	36009257	35992461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36008566
transcript_58521.known	chr17	-	3769	18	FSM	ENSMUSG00000003534.18	ENSMUST00000119825.8	3769	18	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_16	10.4162502800285	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGGTGTATTTCCTGG	9047	False	NA	1	True	AATAAA	-35	NA	36011502	35992458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36011322
transcript_58522.known	chr17	-	3627	18	FSM	ENSMUSG00000003534.18	ENSMUST00000166980.9	3627	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_17	11.600620434428	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGGTGTATTTCC	7613	False	NA	-2	True	AATAAA	-32	NA	36012936	35992461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36012895
transcript_58524.nic	chr17	-	3700	17	NIC	ENSMUSG00000003534.18	novel	3593	17	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_15	11.1186779789685	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGGTGTATTTCC	9002	False	NA	-2	True	AATAAA	-32	NA	36011547	35992461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885_36001073_36002019_36002123_36002338_36002487_36003747_36003977_36004483_36004587_36004679_36004810_36011322
transcript_58528.nic	chr17	-	3116	12	ISM	ENSMUSG00000003534.18	ENSMUST00000119825.8	3769	18	10187	3	7548	0	3prime_fragment	FALSE	canonical	3	13	junction_10	9.54502163520486	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGGTGTATTTCC	5324	False	NA	-2	True	AATAAA	-32	NA	36001315	35992461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885
transcript_58529.nnic	chr17	-	2507	11	NNC	ENSMUSG00000003534.18	novel	3627	18	NA	NA	8942	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_10	9.22821759604746	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGGTGTATTTCC	6718	False	NA	-2	True	AATAAA	-32	NA	35999921	35992461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35997372_35997484_35998036_35998203_35999430_35999583_35999677_35999762_35999853
transcript_58530.nic	chr17	-	3005	11	ISM	ENSMUSG00000003534.18	ENSMUST00000155957.8	2633	16	10129	-861	7548	0	3prime_fragment	FALSE	canonical	3	12	junction_6	10.7893465974544	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGGTGTATTTCC	5324	False	NA	-2	True	AATAAA	-32	NA	36001315	35992461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35998036_35998203_35999430_35999583_35999677_35999762_36000558_36000806_36000885
transcript_58533.nnic	chr17	-	2396	10	NNC	ENSMUSG00000003534.18	novel	3593	17	NA	NA	8942	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_6	10.60863845536	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGGTGTATTTCC	6718	False	NA	-2	True	AATAAA	-32	NA	35999921	35992461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35998036_35998203_35999430_35999583_35999677_35999762_35999853
transcript_58538.known	chr17	+	1131	2	FSM	ENSMUSG00000003541.7	ENSMUST00000003635.7	1131	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCGAAGTGTATCATTC	NA	False	NA	16	True	AATAAA	-29	NA	36132575	36133815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36132821_36132929
transcript_58540.known	chr17	+	1825	13	FSM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_8	11.7434970184448	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134121	36143683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
transcript_58548.nic	chr17	+	1631	12	NIC	ENSMUSG00000059714.14	novel	1825	13	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	49.9444319318153	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134224	36143683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_36134394_36134698_36134756_36135018_36135095_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
transcript_5856.known	chr1	+	2752	8	FSM	ENSMUSG00000026696.16	ENSMUST00000132158.8	2752	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	107.103040220574	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACTGTGGCTTGTTCAG	NA	False	NA	73	True	AATAAA	-24	NA	162398083	162426653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162424617
transcript_58563.known	chr17	-	2649	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	0	0	0	0	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	2181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	-7	True	AATAAA	-16	NA	36149198	36144812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
transcript_5857.known	chr1	+	682	4	FSM	ENSMUSG00000026696.16	ENSMUST00000128704.8	682	4	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_3	12.7540843131393	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTTGGAATCCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	162398195	162409749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387
transcript_58585.known	chr17	+	1466	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	13.2748718344933	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	4589	False	NA	24	True	AATAAA	-18	NA	36172209	36176294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
transcript_58587.known	chr17	+	2536	4	FSM	ENSMUSG00000034595.18	ENSMUST00000144382.8	2536	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	38.7928974026031	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCTAAGGAAGTGCTTCG	8896	False	NA	-89	True	NA	NA	NA	36176516	36186384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36176587_36178121_36179678_36184617_36184832_36185688
transcript_5859.known	chr1	-	11502	35	FSM	ENSMUSG00000040225.16	ENSMUST00000182660.8	11502	35	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	43.790591648835	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCTTGTCTGCAATG	3414	False	NA	NA	False	AATAAA	-13	NA	162568125	162498295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_162501226_162503173_162503411_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937_162534191_162535334_162535543_162536421_162536681_162537097_162537256_162537851_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162548998_162549109_162550678_162550857_162552272_162552439_162567893
transcript_58590.known	chr17	+	302	3	FSM	ENSMUSG00000059791.15	ENSMUST00000172931.2	302	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	132.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGCTGCTGACTGTGCT	4757	False	NA	NA	False	NA	NA	NA	36172377	36175495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36172410_36175003_36175181_36175402
transcript_58593.known	chr17	+	1395	3	FSM	ENSMUSG00000034595.18	ENSMUST00000190496.2	1395	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	4	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGCTGCCTTCCTTTGTT	NA	False	NA	13	True	AATAAA	-20	NA	36179294	36186486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36179678_36184617_36184832_36185688
transcript_58595.known	chr17	+	2743	4	FSM	ENSMUSG00000034595.18	ENSMUST00000122899.8	2743	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	29.4089933334837	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCCTTCCTTTGTTTC	9327	False	NA	15	True	AATAAA	-22	NA	36176947	36186488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36177121_36178121_36179678_36184617_36184832_36185688
transcript_58603.known	chr17	+	3351	20	FSM	ENSMUSG00000024422.15	ENSMUST00000025292.15	3351	20	0	0	0	0	multi-exon	TRUE	canonical	3	278	junction_2	372.558080768229	1320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTTATGTCATTGCTT	NA	False	NA	52	True	AATGAA	-42	NA	36190710	36203562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36191011_36192169_36192415_36192521_36192688_36192913_36192971_36193333_36193589_36193736_36193941_36194024_36194217_36194706_36194818_36194911_36195028_36196386_36196598_36196775_36196875_36196981_36197135_36198290_36198432_36198726_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
transcript_58606.known	chr17	+	3275	20	FSM	ENSMUSG00000024422.15	ENSMUST00000174366.8	3275	20	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	390.40186696343	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTGCATGGGAACTCTG	NA	False	NA	7	True	AATAAA	-14	NA	36190716	36203517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36191011_36192169_36192415_36192521_36192688_36192913_36192971_36193333_36193589_36193736_36193941_36194024_36194217_36194706_36194818_36194911_36195028_36196386_36196598_36196775_36196875_36196981_36197135_36198315_36198432_36198726_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
transcript_5862.known	chr1	-	1827	12	FSM	ENSMUSG00000040225.16	ENSMUST00000183011.8	1827	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_8	11.5006288006316	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAGGAAAAAGTTGAA	3566	False	NA	NA	False	NA	NA	NA	162567973	162537935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162549013_162549109_162550678_162550851_162552272_162552439_162567893
transcript_58635.known	chr17	-	1452	13	FSM	ENSMUSG00000024426.18	ENSMUST00000061052.12	1452	13	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	27.2308801424657	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTGTCATTATTCAAA	NA	False	NA	2	True	AATAAA	-38	NA	36220967	36208486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_58639.known	chr17	-	1340	12	FSM	ENSMUSG00000024426.18	ENSMUST00000077494.13	1340	12	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_5	34.4359508470988	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACCGACAAAAAGTGACT	NA	False	NA	-12	True	AATAAA	-24	NA	36220938	36208500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_58640.known	chr17	-	1388	12	FSM	ENSMUSG00000024426.18	ENSMUST00000149277.8	1388	12	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	38.3140567174602	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTACCGACAAAAAGTG	NA	False	NA	-15	True	AATAAA	-21	NA	36220949	36208503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36208808_36209148_36209243_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_58651.known	chr17	-	1079	7	FSM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	0	0	0	0	multi-exon	FALSE	canonical	3	1264	junction_4	57.4071714451542	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
transcript_58661.known	chr17	-	1193	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148482.8	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	123.227269709265	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208012	36203568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
transcript_58663.known	chr17	-	1293	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148721.8	1293	6	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_5	90.4765162901402	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208323	36203568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36208082
transcript_58669.known	chr17	-	488	6	FSM	ENSMUSG00000024436.17	ENSMUST00000174349.8	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	528.957313967772	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCTTGGTACCCATGGT	4348	False	NA	NA	False	NA	NA	NA	36227229	36221742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36221849_36222310_36222371_36225225_36225295_36225383_36225482_36225587_36225697_36227183
transcript_5868.known	chr1	-	1342	5	FSM	ENSMUSG00000040225.16	ENSMUST00000182288.2	1342	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	1.78535710713571	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACACATGTAAATGTTTTA	3473	False	NA	NA	False	AATAAA	-19	NA	162568066	162547460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_162548176_162548998_162549109_162550678_162550857_162552272_162552439_162567893
transcript_58680.known	chr17	-	803	4	FSM	ENSMUSG00000024436.17	ENSMUST00000113782.10	803	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	650.773044582791	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36227183
transcript_58681.known	chr17	-	2081	5	FSM	ENSMUSG00000050705.16	ENSMUST00000146451.8	2081	5	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_3	46.1756158594555	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACATAAGGCAGGTTTT	NA	False	NA	-13	True	AATAAA	-9	NA	36208003	36203578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562
transcript_58682.known	chr17	-	838	7	FSM	ENSMUSG00000024426.18	ENSMUST00000127959.8	838	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	49.7426711519731	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTGAGTCCCTCTAGTT	NA	False	NA	NA	False	NA	NA	NA	36220937	36218856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36219148_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_58683.known	chr17	-	2034	11	FSM	ENSMUSG00000024426.18	ENSMUST00000141662.8	2034	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	41.2200194080498	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTCGTTTGTGCTTCA	NA	False	NA	NA	False	AAAACA	-11	NA	36220937	36210708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36211765_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_58684.known	chr17	+	4255	20	FSM	ENSMUSG00000039220.17	ENSMUST00000087211.9	4255	20	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	32.7700795901305	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGGTATGTTTCACTTC	NA	False	NA	28	True	AATAAA	-28	NA	36227457	36243175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36227491_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
transcript_58687.nic	chr17	+	4476	20	NIC	ENSMUSG00000039220.17	novel	4222	19	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	16.24875874228	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGGTATGTTTCACTTC	NA	False	NA	28	True	AATAAA	-28	NA	36227643	36243175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_36227898_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
transcript_58693.nic	chr17	+	1432	10	NIC	ENSMUSG00000039220.17	novel	4222	19	NA	NA	-68	-1270	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	15.024260216787	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGAAGATCATCCCT	NA	False	NA	NA	False	AATACA	-37	NA	36227821	36237951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_36227898_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865
transcript_58696.nic	chr17	+	1013	7	NIC	ENSMUSG00000039220.17	novel	4222	19	NA	NA	-15	1984	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	16.7406690427832	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTCCTGGGCTCTTTA	NA	False	NA	53	True	NA	NA	NA	36227874	36237171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_36227898_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093
transcript_58697.known	chr17	+	1385	2	FSM	ENSMUSG00000039220.17	ENSMUST00000133641.2	1385	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTAGGGCAAAAATCAT	NA	False	NA	NA	False	AATAAA	-16	NA	36227673	36229250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36227898_36228089
transcript_58698.known	chr17	+	4222	19	FSM	ENSMUSG00000039220.17	ENSMUST00000087210.7	4222	19	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	14.6080478411181	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCTGGTATGTTTCACT	NA	False	NA	26	True	AATAAA	-26	NA	36228087	36243173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
transcript_58700.known	chr17	-	3161	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	0	0	0	0	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	-12	True	AATAAA	-18	NA	36280653	36267710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
transcript_58701.nic	chr17	-	3289	22	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	-44	0	intron_retention	FALSE	canonical	3	801	junction_12	69.407338839688	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	-12	True	AATAAA	-18	NA	36280697	36267710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
transcript_58716.nic	chr17	-	842	9	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	-44	5180	-44	-298	5prime_fragment	FALSE	canonical	3	825	junction_3	70.9954884129971	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTAAAGAAACAGGTAAGCC	NA	False	NA	NA	False	NA	NA	NA	36280697	36272890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
transcript_58719.nic	chr17	-	743	8	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	-44	6320	-44	500	5prime_fragment	FALSE	canonical	3	825	junction_2	72.1721298461575	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCTGAGCAGGTGTGTG	NA	False	NA	5	True	AAGAAA	-38	NA	36280697	36274030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
transcript_58724.nic	chr17	-	573	6	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	-44	6750	-44	70	5prime_fragment	FALSE	canonical	3	860	junction_1	66.1712928693402	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTGGCTCGCCACA	NA	False	NA	NA	False	AATAAA	-1	NA	36280697	36274460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
transcript_58725.nic	chr17	-	294	3	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	-44	7435	-44	0	5prime_fragment	FALSE	canonical	3	893	junction_1	74	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGTATCCCTGTGGGCG	NA	False	NA	0	True	NA	NA	NA	36280697	36275145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_36275233_36275968_36276016_36280537
transcript_5873.known	chr1	-	2538	5	FSM	ENSMUSG00000040124.6	ENSMUST00000045138.6	2538	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	10.1827059272082	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGGTCTGTCATTTAA	NA	False	NA	-1	True	AATAAA	-18	NA	163231238	163212476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
transcript_58732.nic	chr17	-	2380	6	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	36.7205664444327	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36291162	36283432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018_36290148_36290599
transcript_58734.nic	chr17	-	2810	5	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	-12	0	intron_retention	FALSE	canonical	3	88	junction_4	22.0056810846654	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36291140	36283432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018
transcript_58739.known	chr17	-	2727	4	FSM	ENSMUSG00000038500.16	ENSMUST00000055454.14	2727	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	38.4216374224502	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36291128	36283432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36290018
transcript_58742.known	chr17	-	581	4	FSM	ENSMUSG00000038500.16	ENSMUST00000174849.8	581	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	46.54985380094	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCTAAATGGGACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	36290700	36289055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36289336_36289602_36289674_36290018_36290148_36290599
transcript_58745.known	chr17	-	1878	4	FSM	ENSMUSG00000038500.16	ENSMUST00000172429.8	1878	4	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	20.5101600838869	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36289863	36283432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602
transcript_58746.known	chr17	+	2848	12	FSM	ENSMUSG00000024429.10	ENSMUST00000087200.4	2848	12	0	0	0	0	multi-exon	FALSE	canonical	3	575	junction_1	37.9601792225955	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGAGCGGCTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	36290742	36300354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_36291140_36291508_36291675_36291953_36292091_36292198_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
transcript_5875.known	chr1	-	724	3	FSM	ENSMUSG00000040124.6	ENSMUST00000185299.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	13.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGAATGGTTGGCCTCAG	NA	False	NA	NA	False	NA	NA	NA	163231180	163221984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_163222262_163224380_163224739_163231091
transcript_58752.known	chr17	-	1105	6	FSM	ENSMUSG00000073406.11	ENSMUST00000195838.6	1105	6	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	180.752427369593	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394825_36395051
transcript_58753.known	chr17	-	995	6	FSM	ENSMUSG00000073406.11	ENSMUST00000192532.2	995	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	160.992670640623	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAGGGATCATCTGCAT	NA	False	NA	NA	False	NA	NA	NA	36395085	36391193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394858_36395051
transcript_58757.known	chr17	-	829	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
transcript_58758.known	chr17	-	862	5	FSM	ENSMUSG00000073406.11	ENSMUST00000194244.6	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_3	129.95191418367	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394858_36395051
transcript_5876.known	chr1	-	1790	4	FSM	ENSMUSG00000040113.15	ENSMUST00000159679.8	1790	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTGGCTTTCAACAGTG	NA	False	NA	NA	False	AGTAAA	-23	NA	163552801	163529824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_163530858_163531571_163531822_163544651_163544828_163552470
transcript_58765.known	chr17	-	729	5	FSM	ENSMUSG00000024446.14	ENSMUST00000025319.7	729	5	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_3	61.4262769505038	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568961	36566558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497_36568599_36568674
transcript_58767.known	chr17	-	437	4	FSM	ENSMUSG00000024446.14	ENSMUST00000077535.5	437	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	333.755399456948	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATCATCTTCCTCTGTA	NA	False	NA	6	True	AATAAA	-42	NA	36568748	36566536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568674
transcript_58768.nic	chr17	-	639	4	NIC	ENSMUSG00000024446.14	novel	729	5	NA	NA	-48	0	intron_retention	FALSE	canonical	3	710	junction_3	28.7672653471886	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568796	36566564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_36566691_36566835_36566962_36568333_36568599_36568674
transcript_58769.known	chr17	-	579	4	FSM	ENSMUSG00000024446.14	ENSMUST00000173486.8	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_3	70.7153920067383	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568735	36566558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497
transcript_58772.known	chr17	-	3204	7	FSM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	8.81286937760152	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTGAGTTGCGTGGTA	NA	False	NA	-8	True	NA	NA	NA	36582459	36569764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36571814_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
transcript_58774.nic	chr17	-	3089	7	NIC	ENSMUSG00000045409.17	novel	3204	7	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	19.4028921097403	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTGAGTTGCGTGGTA	NA	False	NA	-8	True	NA	NA	NA	36582320	36569764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_36571838_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
transcript_58777.known	chr17	-	1465	5	FSM	ENSMUSG00000045409.17	ENSMUST00000113704.10	1465	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	19.421315609402	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCATTGTGTTTGTCAT	NA	False	NA	0	True	ATTAAA	-20	NA	36582275	36573496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_36574130_36574620_36574852_36578016_36578113_36579500_36579959_36582228
transcript_58780.known	chr17	+	3187	10	FSM	ENSMUSG00000024457.17	ENSMUST00000130367.8	3187	10	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	52.5084355362939	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	31	True	AATAAA	-38	NA	37148034	37170290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
transcript_58783.known	chr17	+	1426	10	FSM	ENSMUSG00000024457.17	ENSMUST00000144182.8	1426	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	76.2335592475883	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAAGGGGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	37148075	37168519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37148176_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
transcript_5879.known	chr1	+	3946	20	FSM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	20.2454468052323	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAACTCTCATTTTTATG	NA	False	NA	18	True	ATTAAA	-25	NA	163607151	163744678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163743293
transcript_58791.nic	chr17	+	3125	9	NIC	ENSMUSG00000024457.17	novel	3187	10	NA	NA	-5	0	intron_retention	FALSE	canonical	3	29	junction_1	72.8807887923834	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	31	True	AATAAA	-38	NA	37148020	37170290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_37148157_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
transcript_58796.nic	chr17	+	541	2	ISM	ENSMUSG00000024457.17	ENSMUST00000134325.8	4338	5	-30	18148	-23	28	5prime_fragment	FALSE	canonical	3	108	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGAATTTAACTTTGGG	NA	False	NA	NA	False	NA	NA	NA	37148002	37148775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_37148157_37148388
transcript_58797.known	chr17	+	522	2	FSM	ENSMUSG00000024457.17	ENSMUST00000124307.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	37148025	37148747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37148157_37148356
transcript_58798.known	chr17	-	1843	7	FSM	ENSMUSG00000050747.15	ENSMUST00000025329.13	1843	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCTTTGTGTTTTGTGTC	7466	False	NA	NA	False	AATAAA	-14	NA	37178079	37171582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_37172475_37173218_37173252_37173674_37173791_37175140_37175164_37175852_37176084_37177196_37177293_37177627
transcript_58799.known	chr17	-	1778	7	FSM	ENSMUSG00000050747.15	ENSMUST00000174195.8	1778	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGGCCTTTGTGTTTTGTG	7443	False	NA	NA	False	AATAAA	-12	NA	37178102	37171584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_37172389_37173218_37173252_37173674_37173791_37175140_37175164_37175852_37176084_37177196_37177293_37177627
transcript_58800.known	chr17	+	1579	4	FSM	ENSMUSG00000036492.13	ENSMUST00000040498.12	1579	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1.4142135623731	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATGATGCACAGCAGGAAG	6857	False	NA	NA	False	NA	NA	NA	37253809	37258878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37254343_37256065_37256089_37256295_37256388_37257947
transcript_58801.known	chr17	-	1599	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_2	5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTGTTAAATACAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	37262605	37259247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_37260447_37260768_37260878_37262314
transcript_58803.known	chr17	-	520	4	FSM	ENSMUSG00000036398.14	ENSMUST00000174711.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	334.250737554243	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTGCCTCCGTTCTCCT	NA	False	NA	-15	True	AATATA	-23	NA	37262633	37260181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_37260447_37260768_37260878_37262314_37262401_37262573
transcript_58804.known	chr17	-	584	5	FSM	ENSMUSG00000036315.14	ENSMUST00000174466.2	584	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	268.393833759272	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTACCATGCTTTGTTCTC	NA	False	NA	-98	True	NA	NA	NA	37269451	37265334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269122_37269269
transcript_58805.known	chr17	-	710	5	FSM	ENSMUSG00000036315.14	ENSMUST00000172518.8	710	5	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	61.4532342517463	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGATGTTATGTGTG	NA	False	NA	-13	True	ACTAAA	-15	NA	37269425	37265249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269189_37269269
transcript_58806.known	chr17	-	742	4	FSM	ENSMUSG00000036315.14	ENSMUST00000113669.9	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	61.9157133170212	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGATGTTATGTGTGTT	NA	False	NA	-11	True	ACTAAA	-17	NA	37269374	37265247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040
transcript_58807.known	chr17	+	976	3	FSM	ENSMUSG00000036214.15	ENSMUST00000040177.7	976	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	121.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269483	37276514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37269595_37275248_37275325_37275725
transcript_58808.known	chr17	+	1020	3	FSM	ENSMUSG00000036214.15	ENSMUST00000173814.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	112	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269532	37276514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37269688_37275248_37275325_37275725
transcript_58809.known	chr17	+	652	3	FSM	ENSMUSG00000036214.15	ENSMUST00000172672.8	652	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	106.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAAAGCAGAGTCGTA	NA	False	NA	NA	False	NA	NA	NA	37269510	37275833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37269979_37275248_37275325_37275725
transcript_58848.known	chr17	+	1991	6	FSM	ENSMUSG00000036036.16	ENSMUST00000089968.13	1991	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1202.47155475712	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37312054	37321524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37312233_37313343_37313670_37314177_37314208_37315688_37315796_37316950_37317087_37320310
transcript_58853.nnic	chr17	+	1864	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	-110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1406.78256582174	368	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313263	37321524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316941_37317087_37320310
transcript_58855.known	chr17	+	425	5	FSM	ENSMUSG00000036036.16	ENSMUST00000172527.8	425	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1405.88868691657	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCTCAGATCTGCAAGAT	NA	False	NA	NA	False	AAGAAA	-11	NA	37313373	37320334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37313493_37314177_37314208_37315688_37315796_37316941_37317087_37320310
transcript_5886.nic	chr1	+	611	3	ISM	ENSMUSG00000026585.14	ENSMUST00000077642.12	4012	21	-5	123007	-5	-123007	5prime_fragment	FALSE	canonical	3	150	junction_2	5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGCAGAAGGAGTCTGC	NA	False	NA	13	True	NA	NA	NA	163607146	163621671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_163607472_163610553_163610686_163621517
transcript_58861.known	chr17	+	1749	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313416	37321524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
transcript_58862.known	chr17	+	5248	23	FSM	ENSMUSG00000024462.18	ENSMUST00000025338.16	5248	23	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	29.403997029695	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGACCAGTTGGATTT	NA	False	NA	NA	False	AAAACA	-18	NA	37356857	37385959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312_37359499_37360668_37360690_37361890_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37373669_37374221_37374286_37375551_37375630_37378105_37378257_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
transcript_58866.nnic	chr17	+	4296	21	NIC	ENSMUSG00000024462.18	novel	5248	23	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	23.5424616384948	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGCACCTCATCCAC	NA	False	NA	26	True	AATAAA	-14	NA	37356860	37385182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312_37359499_37361890_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37373669_37374221_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
transcript_58867.known	chr17	+	4204	21	FSM	ENSMUSG00000024462.18	ENSMUST00000173823.8	4204	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	26.3200968843202	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGCACCTCATCCAC	NA	False	NA	26	True	AATAAA	-14	NA	37356911	37385182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37357182_37357586_37357669_37358345_37358550_37360544_37360690_37361890_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37373669_37374221_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
transcript_58870.known	chr17	+	1595	4	FSM	ENSMUSG00000024462.18	ENSMUST00000174456.8	1595	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	13.0213499897497	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTTGTAATTTGTCT	NA	False	NA	16	True	NA	NA	NA	37356919	37360359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312
transcript_58872.known	chr17	+	1438	8	FSM	ENSMUSG00000016206.7	ENSMUST00000038580.7	1438	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	3.09047252182628	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCCCATGTGTTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	37581110	37585375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_37581226_37581412_37581683_37581888_37582165_37583159_37583436_37583538_37583644_37584609_37584643_37584756_37584804_37585059
transcript_58875.known	chr17	+	1849	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGGAGACTGTGGAGGAGC	NA	False	NA	-20	True	NA	NA	NA	40157243	40159092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_40157200_40159100
transcript_58880.known	chr17	+	3674	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTCCTGTTGTGTGTTC	NA	False	NA	NA	False	TATAAA	-23	NA	41245575	41272879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
transcript_58884.known	chr17	-	1442	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	496	4	496	-4	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTGATGTGTGAGTAG	NA	False	NA	-5	True	AATAAA	-23	NA	41245442	41233945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
transcript_58886.known	chr17	-	1942	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGATGTGTGAGTAGAACT	NA	False	NA	-1	True	AATAAA	-27	NA	41245938	41233941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
transcript_58891.known	chr17	-	5364	18	FSM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	39.8587471351445	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTTGTTTTTTCCTG	NA	False	NA	-3	True	AATAAA	-17	NA	43187280	43103841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136823_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
transcript_58900.nnic	chr17	-	2522	18	NNC	ENSMUSG00000061665.8	novel	5364	18	NA	NA	-30	-1185	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_11	66.4230959957521	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGTTTTTTTATTGAAA	NA	False	NA	-17	True	TATAAA	-17	NA	43187586	43106953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136787_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
transcript_58911.nic	chr17	-	1107	6	ISM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	-306	36968	-30	-4498	5prime_fragment	FALSE	canonical	3	243	junction_4	28.7930547181087	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAGTGTACTGGCTTGGTT	NA	False	NA	NA	False	AAAACA	-6	NA	43187586	43140809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
transcript_58912.nic	chr17	-	685	3	ISM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	-306	52388	-30	-19918	5prime_fragment	FALSE	canonical	3	243	junction_1	1	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATTAAGAAGAGTATGTA	NA	False	NA	NA	False	NA	NA	NA	43187586	43156229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_43156371_43163258_43163420_43187203
transcript_58913.nic	chr17	-	472	2	ISM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	-306	59489	-30	-27019	5prime_fragment	FALSE	canonical	3	245	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACAGGAAGAAGGATGGCT	NA	False	NA	NA	False	NA	NA	NA	43187586	43163330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_43163420_43187203
transcript_58915.known	chr17	+	3627	6	FSM	ENSMUSG00000023915.6	ENSMUST00000024708.6	3627	6	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	28.3450171987953	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTTTTGGTATAT	NA	False	NA	21	True	AATAAA	-17	NA	43327445	43400080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_43327984_43348485_43349138_43350585_43351081_43375858_43376125_43396226_43396456_43398633
transcript_58916.nnic	chr17	+	3346	6	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	19730	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_1	56.2899635814414	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTTTTGGTATAT	NA	False	NA	21	True	AATAAA	-17	NA	43347188	43400080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_43347446_43348485_43349138_43350585_43351081_43375858_43376125_43396226_43396456_43398633
transcript_58918.known	chr17	+	1659	2	FSM	ENSMUSG00000023915.6	ENSMUST00000233482.2	1659	2	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAGAAAAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	43327458	43349619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_43327984_43348485
transcript_58925.known	chr17	-	1273	1	FSM	ENSMUSG00000023912.11	ENSMUST00000233442.2	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAGGAAAATGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	43978023	43976750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_43976800_43978000
transcript_58927.known	chr17	+	2914	5	FSM	ENSMUSG00000039601.17	ENSMUST00000229744.2	2914	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	4.9180788932265	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGAGAAACAAAATGAAAG	4893	False	NA	NA	False	NA	NA	NA	44112734	44349951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_44112988_44147161_44147389_44328657_44328832_44331843_44332016_44347863
transcript_58929.known	chr17	+	2490	4	FSM	ENSMUSG00000023960.14	ENSMUST00000154166.8	2490	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	7.40870359029762	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTTTTGTTTTGCTTAC	NA	False	NA	NA	False	ATTAAA	-26	NA	44389703	44397458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_44389790_44391537_44392402_44393634_44393812_44396095
transcript_5893.known	chr1	-	3179	24	FSM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	0	0	0	0	multi-exon	TRUE	canonical	2	170	junction_8	40.7878461455702	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGCTTACCAGCTTGAA	NA	False	NA	NA	False	AATAGA	-29	NA	163822365	163781322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
transcript_58930.known	chr17	+	2534	4	FSM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	7.40870359029762	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATAGTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	44389735	44397450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_44389874_44391537_44392402_44393634_44393812_44396095
transcript_58932.nic	chr17	+	1634	3	ISM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	-3	3187	-3	-3187	5prime_fragment	FALSE	canonical	3	19	junction_2	5.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAGGAAACTGGGAAGGC	NA	False	NA	-2	True	AGTAAA	-16	NA	44389732	44394263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_44389874_44391537_44392402_44393634
transcript_58933.known	chr17	-	4560	4	FSM	ENSMUSG00000023961.17	ENSMUST00000024757.14	4560	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	10.2740233382816	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCAGCCTTCTTAATTTG	NA	False	NA	NA	False	AATAAA	-17	NA	44416700	44407198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416539
transcript_58934.known	chr17	-	4445	4	FSM	ENSMUSG00000023961.17	ENSMUST00000143137.2	4445	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	11.5854314646552	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATATCAGCCTTC	NA	False	NA	NA	False	AATAAA	-9	NA	44416655	44407206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416601
transcript_58938.known	chr17	+	1180	12	FSM	ENSMUSG00000038954.15	ENSMUST00000127798.8	1180	12	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_10	31.9782984264006	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGGAGTGGCCTGCTTT	NA	False	NA	22	True	AATAAA	-23	NA	45088282	45430173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352194_45359168_45359280_45430029
transcript_58939.known	chr17	+	1508	12	FSM	ENSMUSG00000038954.15	ENSMUST00000050630.14	1508	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_7	13.7774519348892	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGTGGCCTGCTTTGTTT	NA	False	NA	26	True	AATAAA	-27	NA	45088038	45430177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352274_45359168_45359280_45430029
transcript_58948.known	chr17	-	3027	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	0	0	0	0	multi-exon	TRUE	canonical	3	561	junction_9	75.0022221893014	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAGCCTTTTGTTTGAA	2184	False	NA	-2	True	AATAAA	-20	NA	45744663	45702809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_58959.nic	chr17	-	2134	13	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	-27	16000	-27	488	5prime_fragment	FALSE	canonical	3	561	junction_6	47.8954300765973	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGTTTGCTACCAACA	2157	False	NA	NA	False	AATAAA	-12	NA	45744690	45718809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_58964.nic	chr17	-	1819	11	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	-27	18969	-27	-2481	5prime_fragment	FALSE	canonical	3	561	junction_4	50.8936145307051	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCGAGAAGGAACTAGAAG	2157	False	NA	NA	False	NA	NA	NA	45744690	45721778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_58965.known	chr17	-	997	8	FSM	ENSMUSG00000023935.11	ENSMUST00000233553.2	997	8	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	5.17450579322138	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTTTTGTAATATGGT	NA	False	NA	NA	False	NA	NA	NA	45785752	45756805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45757010_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
transcript_58966.known	chr17	-	1160	8	FSM	ENSMUSG00000023935.11	ENSMUST00000024731.9	1160	8	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_7	6.20730313782869	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGCCTCTCCCATGGTA	NA	False	NA	NA	False	TATAAA	-21	NA	45785864	45759862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45760118_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
transcript_58970.nic	chr17	-	1087	6	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	-27	27717	-27	8175	5prime_fragment	FALSE	canonical	3	580	junction_1	48.2493523272593	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCCCTTTGAGTTAGG	2157	False	NA	0	True	NA	NA	NA	45744690	45730526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_58971.nic	chr17	-	940	6	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	-27	27864	-27	8028	5prime_fragment	FALSE	canonical	3	580	junction_1	48.2493523272593	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGAGGCGTTGATTATA	2157	False	NA	NA	False	AAGAAA	-9	NA	45744690	45730673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_58975.nic	chr17	-	823	5	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	-27	32662	-27	3230	5prime_fragment	FALSE	canonical	3	586	junction_3	44.3247955438037	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGCTAAAAGGAAAGCAA	2157	False	NA	NA	False	NA	NA	NA	45744690	45735471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_58980.known	chr17	+	2971	3	FSM	ENSMUSG00000097119.3	ENSMUST00000233940.2	2971	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	20.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45744756	45752488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45745154_45747008_45747151_45750056
transcript_58983.known	chr17	+	2578	2	FSM	ENSMUSG00000097119.3	ENSMUST00000233673.2	2578	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAATGAAAGAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	45744790	45749223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45745154_45747008
transcript_58985.known	chr17	-	418	2	FSM	ENSMUSG00000023932.10	ENSMUST00000232910.2	418	2	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTTGAGCAAACCATTT	2380	False	NA	NA	False	AATAAA	-22	NA	45744467	45738701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45738969_45744316
transcript_58989.known	chr17	+	3349	22	FSM	ENSMUSG00000023938.9	ENSMUST00000024733.9	3349	22	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_8	22.4045468336421	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTT	NA	False	NA	19	True	AATACA	-33	NA	45817766	45831769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
transcript_58993.nnic	chr17	+	3586	21	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	-24	0	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_6	45.491620107444	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTT	NA	False	NA	19	True	AATACA	-33	NA	45817742	45831769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825848_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
transcript_58995.known	chr17	+	2435	6	FSM	ENSMUSG00000023947.9	ENSMUST00000024742.9	2435	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	2.44948974278318	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGGTTATACGTTGCAA	NA	False	NA	NA	False	ATTAAA	-17	NA	45866628	45874095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45867241_45869420_45869524_45870133_45870357_45871049_45871139_45871333_45871574_45872927
transcript_58996.known	chr17	+	2356	6	FSM	ENSMUSG00000023947.9	ENSMUST00000233929.2	2356	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.59090282131363	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGTGGTTATACGTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	45866636	45874092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45867241_45869420_45869524_45870133_45870357_45871049_45871139_45871333_45871574_45872995
transcript_58999.known	chr17	+	850	4	FSM	ENSMUSG00000037089.12	ENSMUST00000226086.2	850	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	186.912338335976	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAGCCAGCTCTAATGG	NA	False	NA	7	True	AATAAA	-16	NA	45874885	45876981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45876589
transcript_59.known	ERCC-00171	+	489	1	FSM	ERCC-00171A	DQ854994	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3035	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00171_+_0_500
transcript_590.known	chr1	-	742	5	FSM	ENSMUSG00000079658.10	ENSMUST00000185771.7	742	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	1265.55254730888	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTGTAAAGCTAATT	NA	False	NA	52	True	NA	NA	NA	16727138	16713414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16726519_16726684_16727045
transcript_59000.known	chr17	+	1906	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	17.6823829464998	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTTTTGGTTGGCAT	NA	False	NA	9	True	ATTAAA	-19	NA	45874799	45878596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
transcript_59097.known	chr17	-	2520	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	0	0	0	0	multi-exon	TRUE	canonical	3	9221	junction_4	988.252604347694	28208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGCTCTCCTTGTAAC	NA	False	NA	-24	True	AATAAA	-19	NA	45884197	45878700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
transcript_5916.known	chr1	+	4368	14	FSM	ENSMUSG00000026584.15	ENSMUST00000027876.11	4368	14	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	12.9505203112215	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTGTTCTTGTCTGT	NA	False	NA	NA	False	AATAAA	-30	NA	163757333	163782695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_163757756_163761047_163761263_163762200_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
transcript_592.known	chr1	-	2014	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGCACTTGGTCTTTA	NA	False	NA	0	True	AATAAA	-23	NA	16727108	16711948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
transcript_5922.known	chr1	+	4288	14	FSM	ENSMUSG00000026584.15	ENSMUST00000170359.8	4288	14	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_9	27.5489881041415	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGGTTACAATTATTTC	NA	False	NA	NA	False	AATAAA	-14	NA	163757358	163782679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_163757756_163761047_163761263_163762200_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773771_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
transcript_59258.nic	chr17	-	992	6	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	-78	2631	-78	39	5prime_fragment	FALSE	canonical	3	9263	junction_4	453.58333302713	2710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGATCAAAGAGAAGTACA	NA	False	NA	24	True	NA	NA	NA	45884275	45881331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
transcript_59260.known	chr17	-	703	6	FSM	ENSMUSG00000023944.15	ENSMUST00000163966.8	703	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4038.94278246177	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGGCTTGGCAGTGTT	NA	False	NA	-171	True	AAGAAA	-40	NA	45884181	45881588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45881726_45881943_45882104_45882338_45882408_45882444_45882546_45882690_45882838_45884092
transcript_5929.known	chr1	+	4336	14	FSM	ENSMUSG00000026584.15	ENSMUST00000162234.2	4336	14	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	30.7224644598249	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATGGTTACAATTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	163757373	163782678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_163757756_163761047_163761263_163762261_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768589_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
transcript_5932.nic	chr1	+	3003	14	NIC	ENSMUSG00000026584.15	novel	4368	14	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	22.8377347864782	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAGAAAACAAACAAA	NA	False	NA	NA	False	AGTAAA	-23	NA	163757313	163781371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_163757756_163761047_163761263_163762261_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
transcript_59321.nic	chr17	-	2288	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	90	0	combination_of_known_junctions	FALSE	canonical	3	1063	junction_5	395.007197897117	1993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45906688	45896127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
transcript_5933.nic	chr1	+	3172	14	NIC	ENSMUSG00000026584.15	novel	4368	14	NA	NA	6	220	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	22.8377347864782	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTTTTATGTGCTATGAA	NA	False	NA	14	True	AATAAA	-23	NA	163757364	163781591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_163757756_163761047_163761263_163762261_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
transcript_59344.nic	chr17	-	2282	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	90	0	combination_of_known_junctions	FALSE	canonical	3	1453	junction_5	311.5369990469	2302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45906688	45896127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
transcript_59366.known	chr17	-	1996	13	FSM	ENSMUSG00000023942.16	ENSMUST00000051574.13	1996	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	699.864927444337	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906498	45896128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
transcript_59375.known	chr17	-	1988	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906496	45896128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
transcript_59377.known	chr17	-	2033	13	FSM	ENSMUSG00000023942.16	ENSMUST00000171847.8	2033	13	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_12	693.627476668052	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	-1	True	AATAAA	-18	NA	45910529	45896125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45910398
transcript_59384.nic	chr17	-	2279	13	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-25	0	intron_retention	FALSE	canonical	3	1453	junction_5	323.049746771126	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45906553	45896127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
transcript_594.known	chr1	-	641	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186948.7	641	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	1146.38165062465	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAGTTGAAATTTGTTT	NA	False	NA	-82	True	NA	NA	NA	16727242	16713365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727135
transcript_59428.known	chr17	-	2092	14	FSM	ENSMUSG00000023942.16	ENSMUST00000167692.8	2092	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	708.687252108979	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45904566	45896127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45904481
transcript_59429.known	chr17	-	437	2	FSM	ENSMUSG00000079471.5	ENSMUST00000208801.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTCCGCACGCACGGGCAT	NA	False	NA	NA	False	NA	NA	NA	45912896	45912278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45912612_45912792
transcript_59430.known	chr17	-	804	2	FSM	ENSMUSG00000079471.5	ENSMUST00000178858.3	804	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	-5	True	AATAAA	-20	NA	45912993	45911896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45912612_45912904
transcript_59431.known	chr17	-	616	2	FSM	ENSMUSG00000079471.5	ENSMUST00000169137.3	616	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTCCTAGCAGGCTACAG	NA	False	NA	NA	False	NA	NA	NA	45912892	45912179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45912612_45912708
transcript_59432.nic	chr17	-	2137	18	ISM	ENSMUSG00000058626.17	ENSMUST00000120717.8	2591	22	16296	0	16268	0	3prime_fragment	FALSE	canonical	0	0	junction_6	2.25072076114223	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCACTTAATTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	45953955	45941129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_45941538_45941651_45941711_45942713_45942828_45942934_45943014_45943306_45943376_45943624_45943690_45943800_45943859_45943965_45944032_45944294_45944335_45944697_45944910_45945193_45945206_45949620_45949797_45949994_45950159_45950335_45950411_45950548_45950635_45950728_45950813_45953393_45953563_45953754
transcript_59442.known	chr17	-	3284	24	FSM	ENSMUSG00000036026.16	ENSMUST00000113523.9	3284	24	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_20	27.310993375713	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTGGCAGTCCCTC	NA	False	NA	-6	True	AATAAA	-20	NA	45997185	45971096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45989888_45989928_45990162_45990243_45990457_45990641_45997042
transcript_59453.nic	chr17	-	3312	23	NIC	ENSMUSG00000036026.16	novel	3284	24	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_20	30.8694933524137	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTGGCAGTCCCTC	NA	False	NA	-6	True	AATAAA	-20	NA	45997252	45971096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45990162_45990243_45990457_45990641_45997042
transcript_59463.nic	chr17	-	2764	23	NIC	ENSMUSG00000036026.16	novel	3284	24	NA	NA	-67	-548	combination_of_known_junctions	FALSE	canonical	3	63	junction_20	30.8694933524137	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCTAATAATTTATTAGAAC	NA	False	NA	NA	False	ACTAAA	-10	NA	45997252	45971644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45990162_45990243_45990457_45990641_45997042
transcript_59483.known	chr17	-	507	4	FSM	ENSMUSG00000036026.16	ENSMUST00000143907.3	507	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	86.5537726246266	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGGGGCATCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	45997046	45989888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_45989928_45990162_45990243_45990457_45990641_45996841
transcript_59485.known	chr17	+	645	3	FSM	ENSMUSG00000023939.8	ENSMUST00000024734.8	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	143	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	37	True	AATAAA	-26	NA	45997247	46009421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_45997354_46006407_46006499_46008973
transcript_59494.nic	chr17	-	1467	5	ISM	ENSMUSG00000023951.19	ENSMUST00000142351.9	1973	8	-35	5522	-35	1131	5prime_fragment	FALSE	canonical	3	442	junction_4	45.7130998730123	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGGCCACGTGCTAGC	NA	False	NA	NA	False	AAGAAA	-21	NA	46343330	46334990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_46335021_46335369_46335447_46336272_46336470_46339276_46339326_46342216
transcript_59495.nic	chr17	-	2293	4	NIC	ENSMUSG00000023951.19	novel	3451	7	NA	NA	-35	1131	intron_retention	FALSE	canonical	3	442	junction_3	52.6687763290548	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGGCCACGTGCTAGC	NA	False	NA	NA	False	AAGAAA	-21	NA	46343330	46334990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_46335021_46335369_46336470_46339276_46339326_46342216
transcript_59497.nic	chr17	-	1437	4	ISM	ENSMUSG00000023951.19	ENSMUST00000142351.9	1973	8	-35	5901	-35	752	5prime_fragment	FALSE	canonical	3	442	junction_3	52.7530936428271	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGCCAGAGCTTCACAC	NA	False	NA	NA	False	NA	NA	NA	46343330	46335369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_46335447_46336272_46336470_46339276_46339326_46342216
transcript_59499.known	chr17	-	463	3	FSM	ENSMUSG00000023951.19	ENSMUST00000146149.2	463	3	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_2	64.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGCTTCTTTGCTACCTT	NA	False	NA	NA	False	NA	NA	NA	46342282	46336121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46336470_46339276_46339326_46342216
transcript_595.known	chr1	-	960	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	0	0	0	multi-exon	TRUE	canonical	3	1066	junction_3	717.825574603995	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTGTTTTGTTTATT	NA	False	NA	-2	True	TATAAA	-20	NA	16727266	16712990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
transcript_59502.known	chr17	+	884	6	FSM	ENSMUSG00000023967.10	ENSMUST00000024763.10	884	6	0	0	0	0	multi-exon	FALSE	canonical	3	1040	junction_5	46.4732180938656	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTCAGTGCTTAGAA	NA	False	NA	19	True	AATAAA	-19	NA	46421911	46439836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439430
transcript_59504.known	chr17	+	621	5	FSM	ENSMUSG00000023967.10	ENSMUST00000123646.2	621	5	0	0	0	0	multi-exon	FALSE	canonical	3	1063	junction_2	42.9905512874632	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCATGGCTGTACTGT	NA	False	NA	NA	False	NA	NA	NA	46421921	46436791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568
transcript_59506.known	chr17	-	966	5	FSM	ENSMUSG00000023966.9	ENSMUST00000024762.3	966	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.22474487139159	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTGTCTTGATTGTTGT	NA	False	NA	NA	False	CATAAA	-21	NA	46455142	46440196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46440425_46445898_46446046_46447667_46447798_46452472_46452639_46454847
transcript_59508.known	chr17	-	1272	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	3.5	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTTGATTTAGACTTTT	NA	False	NA	-2	True	AATAAA	-21	NA	46464479	46458312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46459211_46463704_46463968_46464368
transcript_59512.known	chr17	+	2966	12	FSM	ENSMUSG00000023952.14	ENSMUST00000024748.14	2966	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	11.1762735698931	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTATTCTTAAGACA	NA	False	NA	5	True	AATAAA	-18	NA	46471957	46480296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46472253_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
transcript_59514.known	chr17	+	2929	12	FSM	ENSMUSG00000023952.14	ENSMUST00000169383.8	2929	12	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	18.651656696408	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGCTTATTCTTAAGA	NA	False	NA	3	True	AATAAA	-16	NA	46471957	46480294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46472218_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
transcript_59528.known	chr17	+	608	2	FSM	ENSMUSG00000023952.14	ENSMUST00000165686.2	608	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCATCACTTGGGAGTCAG	NA	False	NA	NA	False	NA	NA	NA	46472086	46473084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46472253_46472642
transcript_59529.known	chr17	-	3238	11	FSM	ENSMUSG00000023953.10	ENSMUST00000024749.9	3238	11	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_7	5.44426303552648	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGGCTTGCATACTTTT	7123	False	NA	-12	True	AATAAA	-15	NA	46513571	46482280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46505127_46505343_46509559_46509695_46510317_46510461_46513322
transcript_5953.known	chr1	+	1513	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_163822641_163823482
transcript_59534.known	chr17	-	2130	10	FSM	ENSMUSG00000023953.10	ENSMUST00000233438.2	2130	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	6.99382443638054	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTTTTTTCTAACGGAT	7146	False	NA	NA	False	NA	NA	NA	46513548	46483150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46509559_46509695_46510317_46510461_46513322
transcript_59539.known	chr17	+	5081	32	FSM	ENSMUSG00000067150.7	ENSMUST00000087031.7	5081	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	77.9414252168146	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGCCCTATTTTCCTTT	NA	False	NA	14	True	AGTAAA	-16	NA	46513707	46554524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546928_46547838_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
transcript_5954.known	chr1	+	1419	2	FSM	ENSMUSG00000041396.14	ENSMUST00000111490.2	1419	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_163822547_163823482
transcript_59552.known	chr17	+	2137	5	FSM	ENSMUSG00000067150.7	ENSMUST00000233340.2	2137	5	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_2	19.3180614969515	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAGGAAAGAGGTTGAGG	NA	False	NA	NA	False	NA	NA	NA	46513742	46520595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000
transcript_59557.known	chr17	-	1314	9	FSM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	0	0	0	0	multi-exon	TRUE	canonical	3	702	junction_8	54.719597723302	457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTTTTGTCTA	NA	False	NA	2	True	AATAAA	-25	NA	46558980	46554845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
transcript_59564.nnic	chr17	+	2414	10	NNC	ENSMUSG00000071074.10	novel	2035	9	NA	NA	-34	449	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	53.3124959293993	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTTTTGTTTTCGTTTTT	2546	False	NA	NA	False	NA	NA	NA	46558971	46563912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562289_46562414_46562491_46563410_46563513
transcript_59566.known	chr17	+	2035	9	FSM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	7.84219357067906	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGATGGTTCACAGTTGC	2580	False	NA	NA	False	NA	NA	NA	46559005	46563463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562289_46562414_46562491
transcript_59568.known	chr17	+	1570	8	FSM	ENSMUSG00000071074.10	ENSMUST00000151488.2	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_7	7.73542078324622	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGATTGAAGTCTAGACC	2645	False	NA	7	True	ATTAAA	-2	NA	46559070	46562927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562414_46562491
transcript_59573.known	chr17	+	2010	6	FSM	ENSMUSG00000071073.6	ENSMUST00000233692.2	2010	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.489897948556636	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCTGACTTGCAGCTGTA	8031	False	NA	NA	False	TATAAA	-6	NA	46564456	46568234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46565543_46566104_46566266_46566584_46566708_46567108_46567210_46567573_46567797_46567918
transcript_59581.nic	chr17	-	2661	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	128.047189132086	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5747	False	NA	-30	True	AATAAA	-18	NA	46594011	46568799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46571805_46571836_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
transcript_59584.nic	chr17	-	2725	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	112.156620125682	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5747	False	NA	-30	True	AATAAA	-18	NA	46594011	46568799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46582725_46582856_46593271_46593366_46593885
transcript_59597.nic	chr17	-	2536	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	117.719199793407	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5806	False	NA	-30	True	AATAAA	-18	NA	46593952	46568799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46593271_46593366_46593885
transcript_59598.nic	chr17	-	2628	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_7	97.6076328982524	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5747	False	NA	-30	True	AATAAA	-18	NA	46594011	46568799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46582725_46582856_46593271_46593366_46593885
transcript_5960.known	chr1	+	3432	6	FSM	ENSMUSG00000040918.13	ENSMUST00000159230.8	3432	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	97.8296478578963	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCTTTTCACTCAGAA	NA	False	NA	13	True	AATAAA	-15	NA	164076623	164092938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_164077026_164084315_164084805_164088360_164088587_164089615_164089809_164090188_164090331_164090958
transcript_59601.known	chr17	-	2559	11	FSM	ENSMUSG00000012296.17	ENSMUST00000164342.10	2559	11	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	88.074059745194	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5819	False	NA	-30	True	AATAAA	-18	NA	46593939	46568799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
transcript_59614.known	chr17	-	2426	10	FSM	ENSMUSG00000012296.17	ENSMUST00000012440.14	2426	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	101.660412679532	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTCTTTCTCCTTCCC	5822	False	NA	-27	True	AATAAA	-21	NA	46593936	46568796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593271_46593366_46593885
transcript_59616.known	chr17	-	2412	10	FSM	ENSMUSG00000012296.17	ENSMUST00000225080.2	2412	10	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	91.006850915633	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5833	False	NA	-33	True	AATAAA	-15	NA	46593925	46568802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46593271_46593366_46593885
transcript_59632.known	chr17	-	2368	9	FSM	ENSMUSG00000012296.17	ENSMUST00000180283.2	2368	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	136.842461885922	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAATCCCCTTTTTGCT	5806	False	NA	-7	True	AATAAA	-41	NA	46593952	46568776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593885
transcript_5964.known	chr1	+	3571	6	FSM	ENSMUSG00000040918.13	ENSMUST00000044021.12	3571	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_3	19.417517864032	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTATTTTGAGTTCATC	NA	False	NA	29	True	AATAAA	-31	NA	164076614	164092954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_164077026_164084315_164084919_164088360_164088587_164089615_164089809_164090188_164090331_164090958
transcript_59653.known	chr17	-	4866	21	FSM	ENSMUSG00000032842.14	ENSMUST00000167360.8	4866	21	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_18	9.45832966226067	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAATACTATTTCTG	7112	False	NA	6	True	GATAAA	-24	NA	46638949	46614146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46614579_46614838_46614952_46615082_46615181_46615255_46615402_46616326_46616593_46616886_46617048_46617474_46617645_46617882_46618227_46620963_46621160_46621302_46621457_46623215_46623414_46623760_46623839_46624556_46624747_46625141_46625241_46626309_46626482_46627482_46627563_46632478_46632589_46633062_46633220_46634277_46634506_46634618_46635841_46638697
transcript_59657.known	chr17	-	4885	20	FSM	ENSMUSG00000032842.14	ENSMUST00000047970.14	4885	20	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_17	9.55491490762564	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCTGTGTTTTAAAAAA	7156	False	NA	-6	True	GATAAA	-12	NA	46638905	46614158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46614579_46614838_46614952_46615082_46615402_46616326_46616593_46616886_46617048_46617474_46617645_46617882_46618227_46620963_46621160_46621302_46621457_46623215_46623414_46623760_46623839_46624556_46624747_46625141_46625241_46626309_46626482_46627482_46627563_46632478_46632589_46633062_46633220_46634277_46634506_46634618_46635841_46638697
transcript_59660.known	chr17	-	2283	2	FSM	ENSMUSG00000032842.14	ENSMUST00000165733.2	2283	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTTATCTTCAACTTGC	7138	False	NA	NA	False	TATAAA	-19	NA	46638923	46633783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46635841_46638697
transcript_59661.known	chr17	+	1528	6	FSM	ENSMUSG00000047428.15	ENSMUST00000166617.8	1528	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.22710574513201	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGCTTCTGTGGAAGGGA	NA	False	NA	NA	False	AATAAA	-16	NA	46608853	46614197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46609005_46609493_46609625_46609873_46609938_46611876_46612008_46612569_46612715_46613291
transcript_59662.known	chr17	+	13060	10	FSM	ENSMUSG00000015597.18	ENSMUST00000113481.9	13060	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	9.25496196575947	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACACAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	46694656	46730950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46695257_46697637_46697790_46707587_46708231_46709565_46711018_46713659_46713760_46716708_46717011_46719944_46720146_46720605_46720706_46721198_46721318_46721559
transcript_59666.nic	chr17	+	3222	6	ISM	ENSMUSG00000015597.18	ENSMUST00000113481.9	13060	10	-27	13994	-27	-3331	5prime_fragment	FALSE	canonical	3	36	junction_4	11.2427754580442	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAGAGCCCAGAAAAAGA	NA	False	NA	NA	False	AGTAAA	-31	NA	46694629	46716956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_46695257_46697637_46697790_46707587_46708231_46709565_46711018_46713659_46713760_46716708
transcript_59669.nic	chr17	+	2831	4	ISM	ENSMUSG00000015597.18	ENSMUST00000113481.9	13060	10	-27	19976	-27	-9313	5prime_fragment	FALSE	canonical	3	45	junction_3	8.73053390247253	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATCTCTGATGAGAAGA	NA	False	NA	NA	False	CATAAA	-13	NA	46694629	46710974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_46695257_46697637_46697790_46707587_46708231_46709565
transcript_5967.nnic	chr1	+	3483	6	NNC	ENSMUSG00000040918.13	novel	3571	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	109.757186552863	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCTTTTCACTCAGAA	NA	False	NA	13	True	AATAAA	-15	NA	164076613	164092938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_164077026_164084388_164084919_164088360_164088587_164089615_164089809_164090188_164090331_164090958
transcript_59670.known	chr17	+	3936	8	FSM	ENSMUSG00000015597.18	ENSMUST00000138127.8	3936	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	19.5948764648688	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCTTCTATTCTTTCTG	NA	False	NA	NA	False	AATAAA	-21	NA	46694676	46731846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46695257_46697637_46697790_46707587_46708231_46709565_46711018_46713659_46713760_46716708_46717011_46719944_46720146_46731340
transcript_59671.known	chr17	+	1035	8	FSM	ENSMUSG00000023968.16	ENSMUST00000113465.10	1035	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.30930734141595	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTCTTTTTTGTTTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	46739851	46742702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46739920_46740244_46740340_46740734_46740793_46740886_46741019_46741707_46741780_46741914_46742010_46742101_46742219_46742304
transcript_59673.known	chr17	-	1989	10	FSM	ENSMUSG00000067144.8	ENSMUST00000087012.7	1989	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	10.8297714942322	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTAGTAGCCAGGACT	2817	False	NA	NA	False	NA	NA	NA	46749383	46743108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248_46748353_46748922
transcript_59674.nic	chr17	-	675	3	ISM	ENSMUSG00000067144.8	ENSMUST00000233715.2	1410	10	3863	-171	3863	-59	3prime_fragment	FALSE	canonical	3	32	junction_1	4.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGGGGAAGTCATTGA	7508	False	NA	NA	False	AATAAA	-31	NA	46744692	46743167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_46743444_46743872_46744080_46744500
transcript_59681.known	chr17	+	1190	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_2	31.4960314960472	350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCACGGTGTC	NA	False	NA	14	True	NA	NA	NA	46807636	46810550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
transcript_59687.known	chr17	-	2616	7	FSM	ENSMUSG00000015605.7	ENSMUST00000015749.7	2616	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	5.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTTTTTTTAATGGC	NA	False	NA	-5	True	TATAAA	-18	NA	46867101	46859254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46860105_46860361_46860439_46860770_46860963_46861826_46861947_46862456_46862719_46864485_46864753_46866253
transcript_5969.known	chr1	+	1909	6	FSM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	8.97552226892675	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTGTCATCTTGTAG	NA	False	NA	20	True	AATAAA	-20	NA	164103153	164115416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959_164110107_164113809_164113965_164115075
transcript_59695.known	chr17	-	4235	20	FSM	ENSMUSG00000023972.11	ENSMUST00000044442.10	4235	20	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_15	41.2008794247642	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTTGTTAGACCCTTC	NA	False	NA	-20	True	AATAAA	-17	NA	46940430	46875396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46876422_46877028_46877208_46878850_46879003_46882528_46882610_46883447_46883681_46884345_46884502_46885197_46885402_46887189_46887318_46887417_46887569_46887686_46887837_46889975_46890096_46890218_46890355_46890492_46890627_46897126_46897394_46897639_46897789_46900937_46901089_46901186_46901378_46901684_46901788_46902440_46902729_46940193
transcript_59707.nic	chr17	-	3277	13	ISM	ENSMUSG00000023972.11	ENSMUST00000044442.10	4235	20	-58	10779	-58	-10779	5prime_fragment	FALSE	canonical	3	399	junction_8	43.6471807667905	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTTGAAATTTATAAGCCA	NA	False	NA	NA	False	AATAAA	-2	NA	46940488	46886175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_46887318_46887417_46887569_46887686_46887837_46889975_46890096_46890218_46890355_46890492_46890627_46897126_46897394_46897639_46897789_46900937_46901089_46901186_46901378_46901684_46901788_46902440_46902729_46940193
transcript_59710.nnic	chr17	-	2633	17	NNC	ENSMUSG00000003546.11	novel	2322	16	NA	NA	237	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_16	32.0511675879366	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	False	NA	-2	True	AATAAA	-18	NA	46956711	46941549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006_46956080_46956416
transcript_59711.nnic	chr17	-	2553	17	NNC	ENSMUSG00000003546.11	novel	2313	16	NA	NA	-167	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_16	30.5511226266728	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	False	NA	-2	True	AATAAA	-18	NA	46957115	46941549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006_46956080_46956900
transcript_59712.known	chr17	-	2313	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_15	23.4960043884534	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	False	NA	-2	True	AATAAA	-18	NA	46956948	46941549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
transcript_59714.known	chr17	-	2322	16	FSM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_15	25.3531501439608	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46956070	46941556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006
transcript_59717.nnic	chr17	+	1058	7	NNC	ENSMUSG00000002767.14	novel	1031	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	404.152920728446	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	28	True	AATAAA	-17	NA	46957154	46961058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959933_46960035_46960809
transcript_59718.known	chr17	+	991	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113430.2	991	7	0	0	0	0	multi-exon	FALSE	canonical	1	17	junction_1	404.985047734961	1836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTTTTCACTTGGGAGG	NA	False	NA	35	True	AATAAA	-24	NA	46957195	46961065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46957325_46958321_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
transcript_5973.known	chr1	+	1740	14	FSM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	20.0017750691572	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164135240	164264869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_164135324_164135628_164135820_164140421_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_59731.known	chr17	+	5530	26	FSM	ENSMUSG00000038545.14	ENSMUST00000043464.14	5530	26	0	0	0	0	multi-exon	TRUE	canonical	3	53	junction_11	16.0216853046114	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTGTATGGGACTGCTA	NA	False	NA	19	True	AATAAA	-20	NA	46961262	46975290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46961642_46962362_46962945_46963385_46963538_46963650_46964125_46964675_46964815_46964911_46965109_46965359_46965586_46966440_46966679_46966769_46966876_46967919_46968148_46968369_46968461_46968557_46968730_46968853_46968960_46969247_46969344_46969533_46969710_46969987_46970122_46970392_46970576_46970788_46970896_46970984_46971168_46972219_46972381_46972561_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
transcript_59739.known	chr17	+	3010	4	FSM	ENSMUSG00000038545.14	ENSMUST00000151002.8	3010	4	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTCATTTATCTTTCT	NA	False	NA	NA	False	NA	NA	NA	46961488	46965773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46961642_46962362_46962945_46963385_46963538_46963650
transcript_59743.nic	chr17	-	2226	8	NIC	ENSMUSG00000023971.10	novel	2274	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	153.326382569461	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTGCATCAGCCTGC	NA	False	NA	-3	True	NA	NA	NA	46985279	46977249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_46978160_46978360_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
transcript_59745.known	chr17	-	1289	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	46985278	46978386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
transcript_5975.nic	chr1	+	2099	14	NIC	ENSMUSG00000026575.16	novel	1740	14	NA	NA	-362	0	intron_retention	FALSE	canonical	3	36	junction_2	27.275061761302	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164134878	164264869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_164135324_164135628_164135820_164140424_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_59751.known	chr17	-	537	6	FSM	ENSMUSG00000023971.10	ENSMUST00000232697.2	537	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	177.485097965998	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACGCAGCAAGAAGCTGGA	NA	False	NA	NA	False	NA	NA	NA	46985213	46978968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983450_46983518_46983631_46983774_46985122
transcript_59758.known	chr17	-	406	4	FSM	ENSMUSG00000023971.10	ENSMUST00000233247.2	406	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	166.85522666871	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGTCCCAGGAGACCT	NA	False	NA	NA	False	NA	NA	NA	46985196	46978873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46985122
transcript_59769.known	chr17	-	3038	15	FSM	ENSMUSG00000059409.10	ENSMUST00000233988.2	3038	15	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_14	104.207504919908	1096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1000	False	NA	NA	False	AATAAA	-15	NA	47016037	46993916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011076_47015758
transcript_59785.nic	chr17	-	3103	14	NIC	ENSMUSG00000059409.10	novel	2926	15	NA	NA	-43	0	intron_retention	FALSE	canonical	3	369	junction_8	38.3709702893574	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1066	False	NA	NA	False	AATAAA	-15	NA	47015971	46993916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011073_47015758
transcript_59796.known	chr17	-	2100	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991830	46985475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
transcript_5980.known	chr1	+	687	6	FSM	ENSMUSG00000026575.16	ENSMUST00000192710.2	687	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	52.9550752997293	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACAAGTGACTTTGGTT	7384	False	NA	NA	False	AATAAA	-12	NA	164200837	164264861	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_164200904_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_59801.known	chr17	-	1854	12	FSM	ENSMUSG00000063576.13	ENSMUST00000233733.2	1854	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	123.030534407903	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCGGCTAATTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	46991729	46986689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46987148_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
transcript_59807.known	chr17	-	1954	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTGTCCTATTTCTGGC	NA	False	NA	-3	True	TATAAA	-14	NA	46991840	46985478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
transcript_59828.known	chr17	+	748	4	FSM	ENSMUSG00000002768.9	ENSMUST00000232732.2	748	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	423.826222249953	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCCCAGCCCACCTTAG	NA	False	NA	-69	True	NA	NA	NA	46991383	46993963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46991429_46992542_46992824_46992934_46993038_46993644
transcript_5983.known	chr1	-	3948	9	FSM	ENSMUSG00000026577.14	ENSMUST00000027866.11	3948	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	81.786975582913	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGACTTAGTTCTTTCTC	NA	False	NA	NA	False	AATAAA	-13	NA	164135053	164117368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164131472_164131494_164134007_164134086_164134715_164134924_164135010
transcript_59830.known	chr17	+	673	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233491.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	413.462076723959	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGCTGCCTTACCTCCC	NA	False	NA	NA	False	NA	NA	NA	46991928	46993802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46992060_46992542_46992824_46992934_46993038_46993644
transcript_59831.known	chr17	+	945	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46991911	46994028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
transcript_59832.known	chr17	+	859	4	FSM	ENSMUSG00000002768.9	ENSMUST00000002845.8	859	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	390.850639275699	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCTGTGCTCCTGAATCC	NA	False	NA	5	True	AATAAA	-30	NA	46992049	46994037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46992132_46992542_46992824_46992934_46993038_46993644
transcript_59833.known	chr17	+	766	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233612.2	766	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	424.297327616169	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAGTTCTGTACATATGG	NA	False	NA	-99	True	NA	NA	NA	46992105	46993933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_46992199_46992542_46992824_46992934_46993038_46993644
transcript_59837.known	chr17	+	3200	17	FSM	ENSMUSG00000002763.17	ENSMUST00000002840.9	3200	17	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_1	12.2574913318346	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTCTTGTGAGAGGTTGC	NA	False	NA	11	True	AATAAA	-18	NA	47022388	47036467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47023311_47024833_47024998_47025386_47025471_47031253_47031357_47031437_47031572_47032108_47032221_47032595_47032805_47033169_47033366_47033547_47033625_47034037_47034171_47034249_47034456_47034599_47034662_47034844_47034954_47035316_47035434_47035552_47035631_47035750_47035891_47036113
transcript_59842.known	chr17	+	3383	16	FSM	ENSMUSG00000002763.17	ENSMUST00000144964.8	3383	16	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	12.537942414926	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTCTTGTGAGAGGTTGC	NA	False	NA	11	True	AATAAA	-18	NA	47022388	47036467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47023311_47024833_47024998_47025386_47025471_47031253_47031357_47031437_47031572_47032108_47032221_47032595_47032805_47033169_47033366_47033547_47033625_47034037_47034171_47034249_47034456_47034599_47034954_47035316_47035434_47035552_47035631_47035750_47035891_47036113
transcript_59850.known	chr17	-	1035	6	FSM	ENSMUSG00000002769.10	ENSMUST00000002846.9	1035	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	8.1338797630651	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTGGTGTTTCTT	2979	False	NA	NA	False	AGTAAA	-23	NA	47040094	47036589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47036898_47036986_47037109_47037194_47037338_47037531_47037643_47038190_47038319_47039871
transcript_59855.known	chr17	-	1908	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAAAGGGGTTTTGACC	NA	False	NA	33	True	NA	NA	NA	47063140	47046630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
transcript_59859.nic	chr17	-	2293	5	NIC	ENSMUSG00000023973.14	novel	1908	6	NA	NA	-2	0	intron_retention	FALSE	canonical	3	416	junction_3	46.8268085609088	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGCTACTGCTATGAA	NA	False	NA	-18	True	NA	NA	NA	47063142	47046681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_47047835_47048100_47048776_47054111_47054209_47058346_47058471_47062898
transcript_59861.known	chr17	-	561	3	FSM	ENSMUSG00000023973.14	ENSMUST00000121671.2	561	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	258.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGACAGTGTGCTCATA	NA	False	NA	NA	False	NA	NA	NA	47063121	47057912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47058127_47058346_47058471_47062898
transcript_59862.known	chr17	-	531	2	FSM	ENSMUSG00000023973.14	ENSMUST00000148656.2	531	2	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAATTTCTCATCCAGAA	NA	False	NA	NA	False	NA	NA	NA	47063103	47058144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47058471_47062898
transcript_59863.known	chr17	+	762	1	FSM	ENSMUSG00000062619.7	ENSMUST00000071430.7	762	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAACTTGGCAGTCGTT	NA	False	NA	10	True	GATAAA	-18	NA	47083560	47084322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47083600_47084300
transcript_59866.known	chr17	-	2606	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	0	0	0	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAGCCGTTCGCCCAG	NA	False	NA	NA	False	NA	NA	NA	47093582	47084832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
transcript_5988.known	chr1	-	1602	8	FSM	ENSMUSG00000026577.14	ENSMUST00000086032.4	1602	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	61.8978750747997	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATACCCATGAAGCTA	NA	False	NA	-24	True	AATAAA	-19	NA	164135058	164119698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715_164134924_164135010
transcript_59883.known	chr17	-	1310	6	FSM	ENSMUSG00000063888.8	ENSMUST00000233192.2	1310	6	0	0	0	0	multi-exon	FALSE	canonical	3	2131	junction_4	73.7276067697847	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCCTAAATCTCTTTATC	NA	False	NA	NA	False	NA	NA	NA	47093582	47088443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
transcript_59889.nnic	chr17	-	4305	7	NIC	ENSMUSG00000036568.8	novel	6575	11	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	45.4266808531433	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCACTGTGATTGTCTT	NA	False	NA	-4	True	AATACA	-19	NA	47123155	47109045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47123064
transcript_59890.nnic	chr17	-	4285	7	NNC	ENSMUSG00000036568.8	novel	6575	11	NA	NA	-294	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_6	43.9523100138725	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCACTGTGATTGTCTT	NA	False	NA	-4	True	AATACA	-19	NA	47123405	47109045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47123334
transcript_59891.nnic	chr17	-	4157	7	NIC	ENSMUSG00000036568.8	novel	6575	11	NA	NA	-44	-148	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	45.4266808531433	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATAACAAATTGCAGTTTA	NA	False	NA	NA	False	TATAAA	-24	NA	47123155	47109193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47123064
transcript_59897.nic	chr17	-	4602	6	ISM	ENSMUSG00000036568.8	ENSMUST00000040624.7	6575	11	19001	0	-227	0	3prime_fragment	FALSE	canonical	3	125	junction_4	7.22772439983706	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCACTGTGATTGTCTT	NA	False	NA	-4	True	AATACA	-19	NA	47123338	47109045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849
transcript_59901.known	chr17	-	566	5	FSM	ENSMUSG00000036568.8	ENSMUST00000233142.2	566	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	56.1204062708031	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGAAGGAAAACTCCACAC	NA	False	NA	NA	False	NA	NA	NA	47123111	47118198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47118417_47119274_47119421_47120493_47120553_47122849_47122946_47123064
transcript_59903.known	chr17	+	1164	1	FSM	ENSMUSG00000036430.9	ENSMUST00000040434.9	1164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCTGGTTTGGCCTTCC	5307	False	NA	21	True	ATTAAA	-21	NA	47201609	47202773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47201600_47202800
transcript_59904.known	chr17	-	7633	47	FSM	ENSMUSG00000023977.16	ENSMUST00000113337.10	7633	47	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_37	23.6319046780947	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTTTTGCCTCCATCTT	NA	False	NA	-4	True	AATAAA	-17	NA	47321446	47239220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47241427_47243378_47243481_47245000_47245172_47246359_47246438_47249575_47249633_47250227_47250337_47251929_47252061_47253645_47253737_47254262_47254399_47255433_47255502_47255716_47255814_47255971_47256028_47256943_47257093_47259498_47259578_47262807_47262912_47264823_47264986_47265795_47265890_47266707_47266908_47267483_47267663_47268039_47268121_47268230_47268341_47270389_47270493_47272424_47272580_47274072_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291414_47291514_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
transcript_59905.known	chr17	-	5691	47	FSM	ENSMUSG00000023977.16	ENSMUST00000113335.4	5691	47	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_37	17.7419541657098	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCTTTTCTTCCCAGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	47321458	47241174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47241427_47243378_47243481_47245000_47245172_47246359_47246438_47249575_47249633_47250227_47250337_47251929_47252061_47253645_47253737_47254262_47254399_47255433_47255502_47255716_47255814_47255971_47256028_47256943_47257093_47259498_47259578_47262807_47262912_47264823_47264986_47265795_47265890_47266707_47266908_47267483_47267663_47268039_47268121_47268230_47268341_47270389_47270493_47272424_47272580_47274072_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291245_47291345_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
transcript_59910.nic	chr17	-	3424	29	ISM	ENSMUSG00000023977.16	ENSMUST00000113335.4	5691	47	-24	26464	0	-88	5prime_fragment	FALSE	canonical	3	75	junction_19	15.2191474458851	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGGAAAAGAAAAGCCGA	NA	False	NA	NA	False	NA	NA	NA	47321482	47267638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_47267663_47268039_47268121_47268230_47268341_47270389_47270493_47272424_47272580_47274072_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291245_47291345_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
transcript_59913.nic	chr17	-	3036	24	ISM	ENSMUSG00000023977.16	ENSMUST00000113335.4	5691	47	-119	32908	-95	-6532	5prime_fragment	FALSE	canonical	3	75	junction_14	14.5988579712343	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATACAGGTATTTTCAT	NA	False	NA	NA	False	AATAAA	-1	NA	47321577	47274082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291245_47291345_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
transcript_59914.nic	chr17	-	2928	24	ISM	ENSMUSG00000023977.16	ENSMUST00000113337.10	7633	47	-23	34862	-11	-6532	5prime_fragment	FALSE	canonical	3	27	junction_14	24.3155064996126	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATACAGGTATTTTCAT	NA	False	NA	NA	False	AATAAA	-1	NA	47321469	47274082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291414_47291514_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
transcript_59928.nnic	chr17	+	4677	17	NNC	ENSMUSG00000064043.16	novel	3503	12	NA	NA	-16189	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_7	10.0179526351446	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTCTCATCTGGGCTA	1904	False	NA	20	True	AATAAA	-25	NA	47507123	47670388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_47507415_47541155_47541243_47597667_47597783_47624718_47626427_47627539_47627587_47628693_47628848_47630277_47630605_47634203_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664658_47664871_47669834
transcript_5993.known	chr1	-	2430	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATAAGGTGCTCATTTGT	NA	False	NA	-5	True	ATTAAA	-16	NA	164135058	164118957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
transcript_59955.known	chr17	+	1018	7	FSM	ENSMUSG00000034729.17	ENSMUST00000119945.8	1018	7	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	381.394116659162	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7141	False	NA	7	True	NA	NA	NA	47679815	47689606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
transcript_59957.known	chr17	+	1017	7	FSM	ENSMUSG00000034729.17	ENSMUST00000120737.8	1017	7	0	0	0	0	multi-exon	FALSE	canonical	3	977	junction_2	314.646892034018	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTGGTTTTGTTTA	7137	False	NA	5	True	NA	NA	NA	47679811	47689604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47679880_47683351_47683417_47683500_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
transcript_59963.known	chr17	+	1668	4	FSM	ENSMUSG00000023979.15	ENSMUST00000024774.14	1668	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	4.64279609239471	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGTCCTGGAGGTGAA	1130	False	NA	NA	False	ATTAAA	-15	NA	47696317	47703892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47696622_47700034_47700185_47701905_47702027_47702799
transcript_59964.nic	chr17	-	577	3	ISM	ENSMUSG00000023982.9	ENSMUST00000059348.9	873	4	4817	0	4817	0	3prime_fragment	FALSE	canonical	3	65	junction_1	4	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTCTCAGCTTTTTT	6653	False	NA	0	True	NA	NA	NA	47706692	47705482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_47705746_47706032_47706127_47706472
transcript_59965.known	chr17	+	4866	5	FSM	ENSMUSG00000034382.15	ENSMUST00000150819.3	4866	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	3.20156211871642	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGGTTGGTGACTTAA	9562	False	NA	13	True	AATAAA	-31	NA	47747729	47781563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47747875_47757489_47757597_47774878_47774955_47776603_47779779_47780200
transcript_59971.known	chr17	-	2784	9	FSM	ENSMUSG00000023980.8	ENSMUST00000067103.4	2784	9	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	52.1152568831815	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTATGATTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	47813217	47798974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_59973.known	chr17	-	1263	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233174.2	1263	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	61.3926805449135	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTATTATTATA	NA	False	NA	NA	False	AATAAA	-19	NA	47813212	47794288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47794760_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_59975.known	chr17	-	2793	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233121.2	2793	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	41.4984632122636	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATAGGGCCTCTCAAAT	NA	False	NA	-4	True	AATAAA	-31	NA	47813212	47799206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_59979.nnic	chr17	-	2402	8	NIC	ENSMUSG00000023980.8	novel	2784	9	NA	NA	-5	-15	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	67.8948767265564	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGTAAATGACTCAGACA	NA	False	NA	-19	True	AATAAA	-16	NA	47813222	47799221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_47800822_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_59980.nnic	chr17	-	3027	8	NNC	ENSMUSG00000023980.8	novel	2793	8	NA	NA	-5	-15	intron_retention	FALSE	canonical	3	5	junction_1	69.953920693612	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGTAAATGACTCAGACA	NA	False	NA	-19	True	AATAAA	-16	NA	47813222	47799221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_47801447_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_59984.known	chr17	-	1692	7	FSM	ENSMUSG00000023980.8	ENSMUST00000233274.2	1692	7	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	14.5535409971442	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAACAAAAC	NA	False	NA	NA	False	TATAAA	-27	NA	47813214	47803588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_59994.known	chr17	-	3854	7	FSM	ENSMUSG00000023988.9	ENSMUST00000024783.9	3854	7	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_6	15.1180539605981	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTTAAGACCCCACAATC	2341	False	NA	-6	True	AATAAA	-17	NA	47922417	47910255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47912824_47913316_47913420_47913562_47913724_47914780_47914915_47915179_47915319_47917763_47917927_47921831
transcript_6.known	ERCC-00014	+	1957	1	FSM	ERCC-00014A	DQ875385	1957	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00014_+_0_2000
transcript_60009.known	chr17	+	1977	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	0	0	0	0	multi-exon	FALSE	canonical	3	3602	junction_2	267.432701814868	6972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47904394	47910614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
transcript_6001.known	chr1	-	2580	6	FSM	ENSMUSG00000026576.13	ENSMUST00000027863.13	2580	6	0	0	0	0	multi-exon	FALSE	canonical	3	1015	junction_5	105.155123508082	2049	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACGTGTGTGACTCGATT	NA	False	NA	-16	True	AATAAA	-16	NA	164285924	164264677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329
transcript_60015.known	chr17	+	560	4	FSM	ENSMUSG00000034165.17	ENSMUST00000183256.8	560	4	0	0	0	0	multi-exon	FALSE	canonical	1	42	junction_1	1940.06534826937	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGCAGCCAGGGGCCCA	NA	False	NA	NA	False	NA	NA	NA	47907248	47909637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47907408_47908344_47908505_47908927_47909065_47909533
transcript_60016.known	chr17	+	931	4	FSM	ENSMUSG00000034165.17	ENSMUST00000182539.8	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	1891.51068373051	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCAACCTTCTCAGTT	NA	False	NA	NA	False	NA	NA	NA	47906992	47910019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47907141_47908344_47908505_47908927_47909065_47909533
transcript_60021.known	chr17	+	3858	2	FSM	ENSMUSG00000034165.17	ENSMUST00000182281.2	3858	2	0	0	0	0	multi-exon	FALSE	canonical	3	3645	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	47904360	47909099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47904778_47905658
transcript_60023.known	chr17	+	2064	7	FSM	ENSMUSG00000034165.17	ENSMUST00000183044.8	2064	7	0	0	0	0	multi-exon	FALSE	canonical	2	40	junction_1	1825.65854937031	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	False	NA	NA	False	AATAAA	-9	NA	47816043	47910608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47816192_47889633_47889718_47904533_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
transcript_6003.known	chr1	-	5535	8	FSM	ENSMUSG00000040848.12	ENSMUST00000043338.10	5535	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	7.62380803664362	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTGTCTCTTACTC	NA	False	NA	NA	False	AATAAA	-26	NA	165022007	165001905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015537_165015624_165015816_165015904_165021808
transcript_60032.known	chr17	+	2144	7	FSM	ENSMUSG00000023266.12	ENSMUST00000113296.8	2144	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	11.8988794990677	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGAGTGCTCTCGTCT	NA	False	NA	NA	False	AATATA	-19	NA	48006122	48015211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48006198_48008115_48008259_48009497_48009587_48010433_48010621_48012547_48012710_48013494_48013650_48013878
transcript_60039.known	chr17	+	2054	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	32.2937902527543	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGTAGTTGCCTTCTT	NA	False	NA	NA	False	CATAAA	-16	NA	47922506	47935343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
transcript_60043.known	chr17	+	599	3	FSM	ENSMUSG00000023984.18	ENSMUST00000146105.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	122	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAATGTTTATTGTCCA	NA	False	NA	NA	False	AATAAA	-12	NA	47922513	47961214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47922618_47923887_47924043_47960874
transcript_60048.known	chr17	-	594	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113301.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	2129.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47998993	47997664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_47997988_47998112_47998214_47998823
transcript_60049.known	chr17	+	1443	5	FSM	ENSMUSG00000090115.8	ENSMUST00000152724.2	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	46.8794997840207	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	False	NA	6	True	TATAAA	-3	NA	47983644	47991981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
transcript_60050.known	chr17	+	1388	9	FSM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	162.479181358721	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48037766	48045407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48037890_48039666_48039827_48040176_48040295_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
transcript_60054.nnic	chr17	+	700	4	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	5730	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	164.050805138733	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48043498	48045407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_48043651_48043885_48044037_48044681_48044781_48045109
transcript_60067.known	chr17	+	2342	9	FSM	ENSMUSG00000023990.19	ENSMUST00000086932.10	2342	9	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_4	27.2370955683604	2282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTCCTGGCTCTGCGGT	NA	False	NA	18	True	AGTAAA	-18	NA	48047954	48103344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48048242_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
transcript_60070.known	chr17	+	2328	9	FSM	ENSMUSG00000023990.19	ENSMUST00000113288.8	2328	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	151.923449062349	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGTTGTCCTGGCTCTG	NA	False	NA	14	True	AGTAAA	-14	NA	48048852	48103340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48049130_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
transcript_60072.nic	chr17	+	2517	9	NIC	ENSMUSG00000023990.19	novel	2296	8	NA	NA	600	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	141.519378090069	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGTTGTCCTGGCTCTG	NA	False	NA	14	True	AGTAAA	-14	NA	48050427	48103340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_48050894_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
transcript_6008.known	chr1	-	4380	7	FSM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_2	54.8414381041684	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTCGTCATGTTTACT	NA	False	NA	NA	False	NA	NA	NA	165064512	165039854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
transcript_60089.known	chr17	-	1371	5	FSM	ENSMUSG00000032717.15	ENSMUST00000035375.14	1371	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCATCTCCCCAGGACTC	2092	False	NA	-10	True	AATAAA	-14	NA	48144216	48126260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868_48143956_48144169
transcript_60090.known	chr17	-	1711	5	FSM	ENSMUSG00000032717.15	ENSMUST00000066368.13	1711	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAGGACTCTTTACAAA	692	False	NA	-2	True	AATAAA	-22	NA	48145616	48126252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868_48143956_48145237
transcript_60092.nic	chr17	-	1598	4	ISM	ENSMUSG00000032717.15	ENSMUST00000035375.14	1371	5	-5	-8	-5	0	intron_retention	FALSE	canonical	2	6	junction_1	0.942809041582063	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAGGACTCTTTACAAA	2087	False	NA	-2	True	AATAAA	-22	NA	48144221	48126252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868
transcript_60093.known	chr17	-	580	3	FSM	ENSMUSG00000032717.15	ENSMUST00000131971.2	580	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGTCCGGCGAGTGCGCG	2214	False	NA	NA	False	NA	NA	NA	48144094	48126963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48127090_48131738_48131967_48143868
transcript_60096.nnic	chr17	-	3157	17	NNC	ENSMUSG00000023991.17	novel	3999	17	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_14	41.8139013218092	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTGTTGGCTTTTTCTT	NA	False	NA	-3	True	NA	NA	NA	48235410	48178688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189420_48189531_48189680_48191187_48191275_48191694_48191767_48199049_48199146_48215220_48215460_48235130
transcript_60098.known	chr17	-	3999	17	FSM	ENSMUSG00000023991.17	ENSMUST00000113265.8	3999	17	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_11	26.5099480148491	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTGTGTCACCAAGG	NA	False	NA	-2	True	ATTAAA	-18	NA	48235570	48178057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189420_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
transcript_60099.nnic	chr17	-	3166	17	NNC	ENSMUSG00000023991.17	novel	3198	17	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_14	38.180492401225	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTGTTGGCTTTTTCTT	NA	False	NA	-3	True	NA	NA	NA	48235416	48178688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189423_48189531_48189680_48191187_48191275_48191694_48191767_48199049_48199146_48215220_48215460_48235130
transcript_6010.nic	chr1	-	549	3	ISM	ENSMUSG00000040843.11	ENSMUST00000142191.2	689	4	-76	5060	-2	0	5prime_fragment	FALSE	canonical	3	591	junction_1	37.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATCTGAACCTTTGCTT	NA	False	NA	NA	False	TATAAA	-34	NA	165064567	165055073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_165055174_165055836_165056017_165064298
transcript_60100.known	chr17	-	3198	17	FSM	ENSMUSG00000023991.17	ENSMUST00000113262.2	3198	17	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_11	19.4871752699051	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTTTTTGTTGGCTTTT	NA	False	NA	-7	True	NA	NA	NA	48235401	48178692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189423_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
transcript_60101.nic	chr17	-	3235	17	NIC	ENSMUSG00000023991.17	novel	3197	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_7	39.6781977287275	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTGTTGGCTTTTTCTT	NA	False	NA	-3	True	NA	NA	NA	48235401	48178688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186650_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189420_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
transcript_60103.known	chr17	-	3156	17	FSM	ENSMUSG00000023991.17	ENSMUST00000113263.8	3156	17	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_13	49.0595540516829	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTGTTGGCTTTTTCTT	NA	False	NA	-3	True	NA	NA	NA	48235325	48178688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186650_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189423_48189531_48189680_48191187_48191269_48191694_48191818_48199049_48199146_48215220_48215460_48235130
transcript_60111.known	chr17	-	788	3	FSM	ENSMUSG00000023991.17	ENSMUST00000153752.2	788	3	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	10.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTCTGGACCTGACTC	NA	False	NA	NA	False	NA	NA	NA	48235351	48198817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48199146_48215220_48215460_48235130
transcript_60112.known	chr17	+	513	2	FSM	ENSMUSG00000051682.16	ENSMUST00000153131.2	513	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCTCTACCGAAGCCATCA	NA	False	NA	NA	False	NA	NA	NA	48579466	48581540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48579847_48581407
transcript_60113.known	chr17	+	2094	5	FSM	ENSMUSG00000071068.8	ENSMUST00000233092.2	2094	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.6583123951777	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGACTCAACCATGGGG	1568	False	NA	NA	False	NA	NA	NA	48606967	48617049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48607625_48609639_48609961_48614907_48615302_48616146_48616254_48616434
transcript_60114.known	chr17	+	3996	6	FSM	ENSMUSG00000043740.16	ENSMUST00000049614.13	3996	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAATAAGCATTTA	NA	False	NA	NA	False	NA	NA	NA	48623168	48634052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48623514_48623758_48624071_48626178_48626243_48628005_48628134_48629438_48629498_48630964
transcript_60115.nic	chr17	-	3631	10	NIC	ENSMUSG00000023994.14	novel	3653	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	14.6245185633537	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGGATTTTTGGTGTT	NA	False	NA	-8	True	AATAAA	-22	NA	48716793	48693916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706094_48707465_48707609_48716653
transcript_60116.known	chr17	-	1407	10	FSM	ENSMUSG00000023994.14	ENSMUST00000160319.8	1407	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	15.1053910742547	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACACTGACCTTTTGCAAA	NA	False	NA	-70	True	NA	NA	NA	48716758	48696108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
transcript_60117.known	chr17	-	3653	10	FSM	ENSMUSG00000023994.14	ENSMUST00000078800.13	3653	10	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_8	14.2837212013545	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGATTTTTGGTGTTTGTT	NA	False	NA	-4	True	AATAAA	-26	NA	48716793	48693912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706094_48707465_48707609_48716653
transcript_60118.known	chr17	-	3645	10	FSM	ENSMUSG00000023994.14	ENSMUST00000046719.14	3645	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	14.7832070227182	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTGACTGGATTTT	NA	False	NA	-15	True	AATAAA	-15	NA	48716793	48693923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
transcript_60119.nic	chr17	-	3573	9	NIC	ENSMUSG00000023994.14	novel	3706	9	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	13.067134345372	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGGATTTTTGGTGTT	NA	False	NA	-8	True	AATAAA	-22	NA	48716819	48693916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
transcript_60120.known	chr17	-	3706	9	FSM	ENSMUSG00000023994.14	ENSMUST00000162460.8	3706	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	12.5492778676703	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGGATTTTTGGTGTT	NA	False	NA	-8	True	AATAAA	-22	NA	48716934	48693916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
transcript_60124.known	chr17	-	2779	2	FSM	ENSMUSG00000023994.14	ENSMUST00000161686.2	2779	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATGAAAATAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	48716778	48704954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48707609_48716653
transcript_60125.nnic	chr17	+	1177	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	-131	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	428.054669405673	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48716910	48724282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_48717123_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
transcript_60126.known	chr17	+	1324	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717041	48724282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
transcript_60128.known	chr17	+	1135	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	381.26547181721	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGAACGTCTGTGTTC	NA	False	NA	21	True	AATAAA	-29	NA	48717107	48724294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
transcript_6013.known	chr1	+	1827	6	FSM	ENSMUSG00000040836.16	ENSMUST00000178700.8	1827	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGGAAGGAAACATCTGGTA	NA	False	NA	NA	False	NA	NA	NA	165123357	165149366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_165123458_165133746_165134162_165137837_165138563_165144808_165144914_165146317_165146438_165149004
transcript_60133.nic	chr17	+	2680	5	ISM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	-8	2	-8	-2	intron_retention	FALSE	canonical	3	324	junction_1	247.498863633755	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGAGGTTTGCACACAT	NA	False	NA	7	True	AATAAA	-15	NA	48717033	48724280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248
transcript_60144.known	chr17	-	1420	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739958	48726258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48726662_48729968_48730534_48739506
transcript_60148.known	chr17	-	956	5	FSM	ENSMUSG00000023995.13	ENSMUST00000024794.12	956	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.06155281280883	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGTGTAAGGTGGA	NA	False	NA	-1	True	AATAAA	-19	NA	48758550	48755462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_48755829_48756047_48756190_48756910_48757099_48757899_48758090_48758480
transcript_6015.known	chr1	-	4110	19	FSM	ENSMUSG00000026571.13	ENSMUST00000027856.13	4110	19	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	5.55583332638924	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGGTTATTGGTTATATA	NA	False	NA	NA	False	AATAAA	-14	NA	165288034	165156266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165165914_165167453_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
transcript_60151.known	chr17	+	2838	9	FSM	ENSMUSG00000043592.16	ENSMUST00000074574.13	2838	9	0	0	0	0	multi-exon	TRUE	canonical	1	5	junction_1	7.66383552798467	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGGTACTTTTGAATGGT	NA	False	NA	NA	False	AATAAA	-26	NA	48761928	48775714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_48762001_48766566_48767013_48767512_48767814_48769203_48769467_48770389_48770492_48770604_48770673_48771469_48771571_48771943_48772058_48774343
transcript_60156.known	chr17	+	2588	11	FSM	ENSMUSG00000064120.15	ENSMUST00000173033.8	2588	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_10	9.4387499172295	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTGGGGACTCTTGTCTG	NA	False	NA	9	True	AATAAA	-25	NA	49735437	49762463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759871_49761057
transcript_60158.known	chr17	+	2646	11	FSM	ENSMUSG00000064120.15	ENSMUST00000024797.16	2646	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	7.06328535456412	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGATTGGGGACTCTTGT	NA	False	NA	6	True	AATAAA	-22	NA	49735391	49762460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759886_49761057
transcript_60163.known	chr17	-	4029	10	FSM	ENSMUSG00000039316.15	ENSMUST00000044503.14	4029	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	9.91071249821234	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATATATTTTTCTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	50497702	50299284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_50301510_50309659_50309742_50311281_50311386_50343968_50344085_50354324_50354529_50362264_50362656_50393595_50393705_50414097_50414285_50476030_50476188_50497248
transcript_60165.known	chr17	-	2976	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	-5	True	AATAAA	-16	NA	50600664	50586424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
transcript_60168.nic	chr17	-	2953	10	NIC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	158	junction_3	120.807570689102	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	-5	True	AATAAA	-16	NA	50600692	50586424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_50588340_50590155_50590255_50591265_50591380_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
transcript_60169.nic	chr17	-	1391	10	NIC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	-120	0	combination_of_known_junctions	FALSE	canonical	3	158	junction_3	120.807570689102	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGATAAAAAAT	NA	False	NA	NA	False	AAGAAA	-15	NA	50600784	50588078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_50588340_50590155_50590255_50591265_50591380_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
transcript_60178.known	chr17	-	5435	22	FSM	ENSMUSG00000023923.11	ENSMUST00000024717.10	5435	22	0	0	0	0	multi-exon	TRUE	canonical	2	15	junction_3	5.14990698460791	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACATCCACTTCTTCCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	51486196	51040151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_51043273_51048503_51048648_51049084_51049165_51063654_51063755_51089288_51089453_51106894_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
transcript_60183.known	chr17	-	2131	13	FSM	ENSMUSG00000023923.11	ENSMUST00000223758.2	2131	13	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_3	4.29793231940921	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51486363	51223751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
transcript_60184.known	chr17	-	4764	23	FSM	ENSMUSG00000023923.11	ENSMUST00000224528.2	4764	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	8.62834556027041	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGTAATCATCAGTTTTAA	NA	False	NA	NA	False	TTTAAA	-35	NA	51486339	51041031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_51043273_51048503_51048648_51049084_51049165_51063654_51063755_51089288_51089453_51102953_51103020_51106894_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
transcript_60185.known	chr17	-	2508	14	FSM	ENSMUSG00000023923.11	ENSMUST00000223979.2	2508	14	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_4	4.19777343065915	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGGAAAAA	NA	False	NA	NA	False	TTTAAA	-23	NA	51486271	51180464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
transcript_60190.known	chr17	-	5993	11	FSM	ENSMUSG00000023927.16	ENSMUST00000152830.9	5993	11	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	11.1821285987955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAGAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	52122032	52046498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_52047442_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52118795
transcript_60191.known	chr17	-	6243	11	FSM	ENSMUSG00000023927.16	ENSMUST00000144331.8	6243	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_10	18.7245827723877	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACATTTTTAAGCCTTTC	NA	False	NA	NA	False	AATAAA	-31	NA	52139700	52043214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_52047442_52049673_52049878_52074919_52075076_52082233_52082447_52089639_52090095_52092556_52092669_52110458_52110583_52111341_52111469_52112224_52112402_52116070_52116316_52139497
transcript_60192.known	chr17	-	2661	13	FSM	ENSMUSG00000023931.6	ENSMUST00000024725.5	2661	13	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	9.14998482087387	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTCCTGGTTTTGCTG	NA	False	NA	-4	True	ATTAAA	-14	NA	53770349	53705916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_53706148_53707773_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
transcript_60203.nic	chr17	-	1172	4	ISM	ENSMUSG00000023931.6	ENSMUST00000024725.5	2661	13	-11	50614	-11	-50355	5prime_fragment	FALSE	canonical	3	22	junction_3	8.16496580927726	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCTATATATTTTAGCCA	NA	False	NA	NA	False	ATTAAA	-10	NA	53770360	53756530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_53756594_53758578_53758723_53759588_53759652_53769458
transcript_60204.nnic	chr17	+	2470	7	NNC	ENSMUSG00000017831.9	novel	2366	6	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	414.185948578655	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTTTTCTCTGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	53786218	53814708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_53786637_53790247_53790309_53790848_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
transcript_60205.known	chr17	+	2366	6	FSM	ENSMUSG00000017831.9	ENSMUST00000017975.7	2366	6	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_1	72.5131712173726	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTTTTCTCTGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	53786261	53814708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_53786637_53790848_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
transcript_6021.known	chr1	-	2213	12	FSM	ENSMUSG00000026571.13	ENSMUST00000195686.2	2213	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.2017681197684	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGAGACAAGGTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	165288044	165194610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165195075_165198691_165198818_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
transcript_60211.known	chr17	+	3226	1	FSM	ENSMUSG00000017831.9	ENSMUST00000233347.2	3226	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAGAAAATAATATATA	NA	False	NA	NA	False	AATACA	-5	NA	53786314	53789540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_53786300_53789500
transcript_60213.known	chr17	+	4653	18	FSM	ENSMUSG00000000708.15	ENSMUST00000000724.15	4653	18	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_6	30.0116471047111	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGTGTTATGTTTTAT	NA	False	NA	19	True	AATATA	-45	NA	53873998	53979748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_53874607_53917891_53918019_53931379_53931526_53936351_53936445_53939564_53939747_53945379_53945572_53948220_53948328_53951641_53951765_53955774_53955912_53960049_53960259_53961466_53961594_53966345_53966457_53967056_53967201_53970562_53970678_53972433_53972471_53972680_53972745_53972850_53972936_53977702
transcript_60229.known	chr17	-	3628	9	FSM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	54.3666660279992	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTTGCCGCTTACTTTT	NA	False	NA	0	True	AATAAA	-30	NA	53996361	53981813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
transcript_60232.known	chr17	-	3523	17	FSM	ENSMUSG00000024174.10	ENSMUST00000086876.7	3523	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	6.91804705101086	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTAATAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	56019578	55958950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_55960519_55961766_55961873_55969462_55969555_55971316_55971406_55972647_55972784_55973411_55973618_55976739_55976897_55979830_55979894_55981051_55981141_55994788_55994959_55999721_55999878_56002026_56002318_56005456_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
transcript_60236.known	chr17	-	1813	5	FSM	ENSMUSG00000024174.10	ENSMUST00000233301.2	1813	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	2.54950975679639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAAAAAATGAATA	NA	False	NA	NA	False	NA	NA	NA	56019628	56004093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
transcript_60238.known	chr17	+	895	5	FSM	ENSMUSG00000003198.11	ENSMUST00000224379.2	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	13.1624465810882	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATCATGAAGATAAACTCA	NA	False	NA	NA	False	NA	NA	NA	56199092	56204665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56199187_56199757_56199861_56202820_56202948_56203140_56203202_56204155
transcript_60239.known	chr17	+	2028	4	FSM	ENSMUSG00000003198.11	ENSMUST00000054780.10	2028	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	17.3781471969828	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATATTTATGTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	56199119	56205928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56199187_56202820_56202948_56203140_56203202_56204155
transcript_6024.known	chr1	+	1025	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCCCCCACTTCATCTT	NA	False	NA	107	True	AATAAA	-16	NA	165288605	165308783	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
transcript_60240.known	chr17	-	1889	4	FSM	ENSMUSG00000062101.13	ENSMUST00000056147.14	1889	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	5.90668171555645	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATATTTATGTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	56252259	56245380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56246994_56247928_56247990_56248185_56248313_56252171
transcript_60242.nnic	chr17	+	1739	8	NNC	ENSMUSG00000003208.10	novel	1660	8	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	2	28	junction_2	40.3591023544521	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTGTTGGAGTCTGCT	236	False	NA	8	True	NA	NA	NA	56266065	56275285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_56266262_56267712_56267785_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
transcript_60244.known	chr17	+	1660	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	8.99205998963212	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTGTTGGAGTCTGCT	344	False	NA	8	True	NA	NA	NA	56266173	56275285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
transcript_6025.nic	chr1	+	1094	4	ISM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	-450	1705	-50	-1599	5prime_fragment	FALSE	canonical	3	453	junction_2	13.0724477007517	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTTTGTTCGCTGTTA	NA	False	NA	NA	False	NA	NA	NA	165288155	165307078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035
transcript_60250.nic	chr17	+	937	3	ISM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	-21	5540	-19	17	5prime_fragment	FALSE	canonical	3	151	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGGATTTGGAAAAAAAAAA	323	False	NA	NA	False	NA	NA	NA	56266152	56269745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_56266262_56267712_56267814_56269018
transcript_60251.known	chr17	+	526	2	FSM	ENSMUSG00000003208.10	ENSMUST00000233226.2	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGATGGAGAAGCTGTCCGT	394	False	NA	NA	False	NA	NA	NA	56266223	56268200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56266262_56267712
transcript_60252.known	chr17	-	1960	3	FSM	ENSMUSG00000097077.2	ENSMUST00000181962.2	1960	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGGCTTTCATCCTCT	4875	False	NA	NA	False	NA	NA	NA	56266381	56261770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56263368_56263861_56263977_56266133
transcript_60253.known	chr17	+	1430	7	FSM	ENSMUSG00000039154.9	ENSMUST00000223629.2	1430	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.34370962471642	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGTCATTCCCTACTGT	NA	False	NA	NA	False	NA	NA	NA	56277588	56283620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56277700_56278370_56278718_56279784_56279894_56279976_56280154_56280887_56280997_56281233_56281354_56283163
transcript_60255.known	chr17	+	1748	13	FSM	ENSMUSG00000011589.10	ENSMUST00000011733.9	1748	13	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_12	6.07533721057706	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCTGCACTGGTTCTT	3933	False	NA	6	True	AATAAA	-16	NA	56293510	56303881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297235_56297418_56297541_56298166_56298377_56300842_56300942_56302356_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
transcript_60258.nic	chr17	+	1920	12	ISM	ENSMUSG00000011589.10	ENSMUST00000011733.9	1748	13	-40	0	-38	0	intron_retention	FALSE	canonical	3	53	junction_3	5.69035721982866	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCTGCACTGGTTCTT	3893	False	NA	6	True	AATAAA	-16	NA	56293470	56303881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297235_56297418_56297541_56298166_56298377_56300842_56300942_56302356_56302517_56302857_56302938_56303071_56303324_56303420
transcript_6026.nnic	chr1	+	730	4	NIC	ENSMUSG00000026568.7	novel	1025	5	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	205.825708360793	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGTCTTTACATTTGCC	NA	False	NA	12	True	AATAAA	-17	NA	165288764	165308688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_165289081_165305789_165305875_165307035_165307148_165308471
transcript_60267.known	chr17	-	1597	12	FSM	ENSMUSG00000038781.8	ENSMUST00000233494.2	1597	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	11.576550821623	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGCCATGTGGCTGTA	NA	False	NA	-9	True	NA	NA	NA	56312573	56304081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56307016_56307086_56307157_56307479_56307615_56307900_56308002_56309011_56309069_56309852_56309976_56310129_56310202_56312429
transcript_60268.known	chr17	-	1509	13	FSM	ENSMUSG00000038781.8	ENSMUST00000043785.8	1509	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_8	11.0839598820398	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTGGCTGTAGGATT	NA	False	NA	-4	True	NA	NA	NA	56312584	56304076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56306809_56306912_56307016_56307086_56307157_56307479_56307615_56307900_56308002_56309011_56309069_56309852_56309976_56310129_56310202_56312429
transcript_60269.known	chr17	+	1701	13	FSM	ENSMUSG00000003199.17	ENSMUST00000149441.8	1701	13	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_1	98.0428973573416	609	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAGTACAGTTCATTTC	NA	False	NA	146	True	TTTAAA	-7	NA	56316200	56323790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56316257_56316329_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
transcript_60279.known	chr17	-	2073	10	FSM	ENSMUSG00000003200.11	ENSMUST00000003268.11	2073	10	0	0	0	0	multi-exon	FALSE	canonical	3	585	junction_1	54.5914116159513	2486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343635	56323749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
transcript_60286.nic	chr17	-	2185	9	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	-35	0	intron_retention	FALSE	canonical	3	585	junction_1	56.6192050014834	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343670	56323749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
transcript_60289.known	chr17	-	1375	9	FSM	ENSMUSG00000003200.11	ENSMUST00000233803.2	1375	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	231.47678069301	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCAAGCAGAGGCTGGCC	NA	False	NA	NA	False	NA	NA	NA	56343576	56324263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56324737_56324843_56324901_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
transcript_6030.known	chr1	-	2285	6	FSM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_2	205.630737002035	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462098	165419808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165461871
transcript_60326.known	chr17	-	3093	1	FSM	ENSMUSG00000003200.11	ENSMUST00000233034.2	3093	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	56343568	56340475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56340500_56343600
transcript_60333.known	chr17	+	5535	14	FSM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	0	0	0	0	multi-exon	TRUE	canonical	3	392	junction_3	50.5723455079702	644	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAGATGAGTGAGGA	NA	False	NA	NA	False	ATTAAA	-11	NA	56347438	56377276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56347552_56351061_56351113_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
transcript_60354.known	chr17	-	2949	11	FSM	ENSMUSG00000019578.12	ENSMUST00000019722.12	2949	11	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_10	25.0960156200143	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCCGGCTCTTTCTTTTTT	6306	False	NA	NA	False	NA	NA	NA	56382028	56374044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
transcript_6036.known	chr1	-	2171	5	FSM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	201.827896981562	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462090	165419808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165461871
transcript_60369.known	chr17	-	1079	6	FSM	ENSMUSG00000019578.12	ENSMUST00000146467.2	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_5	15.1393526942204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGCTCTGTTCTTTGGA	6486	False	NA	NA	False	NA	NA	NA	56381848	56377117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
transcript_6039.known	chr1	-	643	3	FSM	ENSMUSG00000026566.16	ENSMUST00000194437.6	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	400.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACGTTGCATGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	165462082	165420981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165421247_165436006_165436174_165461871
transcript_60390.known	chr17	+	2238	16	FSM	ENSMUSG00000002833.12	ENSMUST00000225843.2	2238	16	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_6	179.285421108974	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAACAGCTTTTATTGG	NA	False	NA	NA	False	TATAAA	-16	NA	56386698	56407598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
transcript_60395.known	chr17	+	2264	16	FSM	ENSMUSG00000002833.12	ENSMUST00000002911.10	2264	16	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	225.638196136105	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAACAGCTTTTATT	NA	False	NA	NA	False	TATAAA	-14	NA	56386637	56407596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403850_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
transcript_6040.nnic	chr1	-	2530	3	NNC	ENSMUSG00000040723.15	novel	2622	7	NA	NA	51020	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	12	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGGTTGGTTCTTATTCT	NA	False	NA	-2	True	AATAAA	-11	NA	165484597	165476515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_165477780_165482873_165483606_165484063
transcript_60403.nic	chr17	+	2383	16	NIC	ENSMUSG00000002833.12	novel	3354	12	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_1	208.4942205434	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTATTGGCTTAGGTGC	NA	False	NA	NA	False	TATAAA	-25	NA	56388425	56407607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56388717_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
transcript_6041.known	chr1	+	2163	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGACTGATTTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	165591314	165602877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
transcript_6043.nic	chr1	+	642	3	ISM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	-23	4571	-23	-3181	5prime_fragment	FALSE	canonical	3	459	junction_1	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCGTATCTGGGTCTTG	NA	False	NA	NA	False	ATTAAA	-3	NA	165591291	165598306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_165591708_165597381_165597502_165598200
transcript_60482.known	chr17	-	1986	9	FSM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.19912097301743	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGTTTTGGAACTTGGG	9995	False	NA	NA	False	AATAAA	-20	NA	56424596	56418600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56419542_56419869_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
transcript_60485.nic	chr17	-	1320	8	ISM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	-4	998	-4	-992	5prime_fragment	FALSE	canonical	2	7	junction_2	3.09047252182628	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATAGGCCAAGGCTCTT	9991	False	NA	NA	False	ATTAAA	-14	NA	56424600	56419598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
transcript_60486.known	chr17	-	3736	17	FSM	ENSMUSG00000001227.13	ENSMUST00000001256.11	3736	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	3.37036719067819	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTGACTCTGGGTCAGC	8351	False	NA	NA	False	AATAAA	-22	NA	56447343	56430084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56431918_56432332_56432392_56432516_56432595_56433216_56433367_56433449_56433633_56433939_56434090_56434477_56434610_56435249_56435468_56436407_56436497_56436972_56437093_56437705_56437797_56438112_56438215_56438522_56438586_56438742_56438804_56439497_56439622_56439715_56439869_56447213
transcript_60489.known	chr17	+	2379	2	FSM	ENSMUSG00000044469.9	ENSMUST00000077788.7	2379	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCTGGCTGTCCTGGA	413	False	NA	NA	False	NA	NA	NA	56469476	56480955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56469607_56478706
transcript_60492.known	chr17	-	1710	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	0	0	0	0	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAACCACCTGAAGCCA	NA	False	NA	-29	True	NA	NA	NA	56490920	56482743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
transcript_60507.known	chr17	-	3374	21	FSM	ENSMUSG00000001229.10	ENSMUST00000038794.6	3374	21	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_20	12.6925174807837	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAGAAGTAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	56525889	56493816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56494462_56495267_56495380_56496322_56496466_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408_56524462_56525740
transcript_60518.known	chr17	+	6801	1	FSM	ENSMUSG00000043683.5	ENSMUST00000060253.5	6801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTTGTTTTAAAAATTA	NA	False	NA	16	True	CATAAA	-23	NA	56563809	56570610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56563800_56570600
transcript_60519.known	chr17	-	2992	2	FSM	ENSMUSG00000047123.9	ENSMUST00000058136.9	2992	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTAGGCTACGGCACT	813	False	NA	NA	False	AATATA	-14	NA	56583786	56576318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56579218_56583693
transcript_6052.known	chr1	-	2201	17	FSM	ENSMUSG00000026565.19	ENSMUST00000184643.8	2201	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.71635131600484	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACAAAAACAGACAGAC	9705	False	NA	22	True	NA	NA	NA	165830187	165703025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165703086_165703471_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
transcript_60524.known	chr17	-	3645	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	0	0	0	0	multi-exon	TRUE	canonical	3	548	junction_7	40.8821102534533	1186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGTAATCTCACCATC	NA	False	NA	NA	False	NA	NA	NA	56597511	56584475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
transcript_6053.known	chr1	-	13022	17	FSM	ENSMUSG00000026565.19	ENSMUST00000160260.9	13022	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	5.36153837531729	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACATTGTCTGTGTCTCT	9645	False	NA	-9	True	ATTAAA	-17	NA	165830247	165692722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165710615_165710688_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
transcript_6054.known	chr1	-	2679	17	FSM	ENSMUSG00000026565.19	ENSMUST00000111429.11	2679	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	7.80124188831496	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACAAAAACAGACAGAC	9714	False	NA	22	True	NA	NA	NA	165830178	165703025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165773470_165773572_165830130
transcript_60541.known	chr17	-	1056	3	FSM	ENSMUSG00000073380.3	ENSMUST00000097303.3	1056	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	4	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTTGTCTGCTGGGC	2710	False	NA	NA	False	ATTAAA	-20	NA	56607286	56601110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56601665_56604826_56605033_56606990
transcript_60552.known	chr17	+	3391	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	450.210766613816	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1447	False	NA	36	True	AATAAA	-20	NA	56611347	56630486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_60553.known	chr17	+	3402	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113035.8	3402	17	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	590.514232338011	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1412	False	NA	36	True	AATAAA	-20	NA	56611312	56630486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_60588.known	chr17	+	3586	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	0	0	0	0	multi-exon	TRUE	canonical	3	1413	junction_6	319.856779473251	2223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	420	False	NA	36	True	AATAAA	-20	NA	56610320	56630486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_60589.known	chr17	+	3483	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	505.023262923353	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	499	False	NA	36	True	AATAAA	-20	NA	56610399	56630486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_60591.nic	chr17	+	4725	24	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	37.0128981759057	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTCATGGCTGTGTC	4870	False	NA	12	True	ATTAAA	-28	NA	56633034	56709864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56633230_56651333_56651443_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701768_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
transcript_60593.nic	chr17	+	4704	24	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	40.7135319325118	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTCATGGCTGTGTC	4870	False	NA	12	True	ATTAAA	-28	NA	56633034	56709864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56633230_56651333_56651443_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701789_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
transcript_60594.known	chr17	+	4577	23	FSM	ENSMUSG00000024201.13	ENSMUST00000025036.11	4577	23	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_12	23.0595707170123	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTCATGGCTGTGTC	4909	False	NA	12	True	ATTAAA	-28	NA	56633073	56709864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701768_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
transcript_60597.nic	chr17	+	3777	23	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	-38	-824	combination_of_known_junctions	FALSE	canonical	3	46	junction_12	29.4305457780414	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTGCAGATGTTTGTCT	4859	False	NA	NA	False	GATAAA	-18	NA	56633023	56709035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701789_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
transcript_60598.nic	chr17	+	4606	23	NIC	ENSMUSG00000024201.13	novel	4577	23	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_12	29.4305457780414	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGTCATGGCTGTGTC	4859	False	NA	12	True	ATTAAA	-28	NA	56633023	56709864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484_56696673_56700717_56701107_56701789_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
transcript_60609.nic	chr17	+	1818	12	NIC	ENSMUSG00000024201.13	novel	4360	22	NA	NA	-27	3656	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	48.5541360980855	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTGGCACCGTGTCCCA	4870	False	NA	NA	False	NA	NA	NA	56633034	56696775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56633230_56651333_56651443_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082_56693280_56696258_56696343_56696484
transcript_6061.known	chr1	-	2591	16	FSM	ENSMUSG00000026565.19	ENSMUST00000160908.8	2591	16	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	5.03940031705713	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACAAAAACAGACAGAC	9701	False	NA	22	True	NA	NA	NA	165830191	165703025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
transcript_60611.nic	chr17	+	2136	10	NIC	ENSMUSG00000024201.13	novel	4360	22	NA	NA	-27	853	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	53.4228415567723	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCGGGTGTCTGCCTGT	4870	False	NA	NA	False	NA	NA	NA	56633034	56693972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56633230_56651333_56651443_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082
transcript_60612.nic	chr17	+	2038	9	ISM	ENSMUSG00000024201.13	ENSMUST00000025036.11	4577	23	-50	15892	-38	853	5prime_fragment	FALSE	canonical	3	116	junction_1	20.6321957144653	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCGGGTGTCTGCCTGT	4859	False	NA	NA	False	NA	NA	NA	56633023	56693972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_56633230_56658632_56658798_56659975_56660152_56660524_56660640_56662862_56663057_56676122_56676173_56679423_56679528_56682853_56682992_56693082
transcript_60618.known	chr17	-	6855	33	FSM	ENSMUSG00000013236.18	ENSMUST00000067538.6	6855	33	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_23	73.3638194207472	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTAGTGCATGGAGTGCT	NA	False	NA	-7	True	ATTAAA	-14	NA	56783483	56719432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56732326_56732927_56733386_56733505_56734938_56735133_56735851_56736158_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56783339
transcript_60619.known	chr17	-	5608	29	FSM	ENSMUSG00000013236.18	ENSMUST00000086828.10	5608	29	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_28	67.8619077274443	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGTGCATGGAGTGCTCC	NA	False	NA	-5	True	ATTAAA	-16	NA	56769216	56719430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56769103
transcript_60620.nic	chr17	-	5666	29	NIC	ENSMUSG00000013236.18	novel	6855	33	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_19	61.8340747979821	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGTGCATGGAGTGCTCC	NA	False	NA	-5	True	ATTAAA	-16	NA	56783510	56719430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728353_56728832_56728845_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56783339
transcript_60626.known	chr17	-	2336	6	FSM	ENSMUSG00000013236.18	ENSMUST00000224571.2	2336	6	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_5	43.8296703158945	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAAAAAAAAAAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	56783389	56752847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56783339
transcript_60628.known	chr17	-	3277	21	FSM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_15	52.6718852899723	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	False	NA	2	True	AATAAA	-31	NA	56891585	56869938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354_56883013_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
transcript_60633.nic	chr17	-	2669	20	NIC	ENSMUSG00000042625.17	novel	3277	21	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_14	55.588067433553	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	False	NA	2	True	AATAAA	-31	NA	56891635	56869938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
transcript_60637.nic	chr17	-	3410	20	NIC	ENSMUSG00000042625.17	novel	3277	21	NA	NA	-15	0	intron_retention	FALSE	canonical	3	72	junction_14	53.7949322598524	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	False	NA	2	True	AATAAA	-31	NA	56891600	56869938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354_56883013_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
transcript_60646.known	chr17	-	1804	12	FSM	ENSMUSG00000042625.17	ENSMUST00000133604.8	1804	12	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_8	46.732047863545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAGGAGAAAGGGCCA	NA	False	NA	NA	False	AAGAAA	-10	NA	56891524	56875990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354_56883013_56883877_56883906_56884842_56884906_56885636_56885845_56885920_56885986_56889983_56890072_56891273
transcript_60653.known	chr17	-	1090	10	FSM	ENSMUSG00000042625.17	ENSMUST00000155983.2	1090	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	47.2215686229278	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGAGAAGGTGCCAGGG	NA	False	NA	NA	False	AATGAA	-41	NA	56891562	56878267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
transcript_60664.nic	chr17	-	942	7	ISM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	-15	12907	-15	485	5prime_fragment	FALSE	canonical	3	72	junction_1	28.3470555006257	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAGAGGAAGAGGAGGA	NA	False	NA	NA	False	NA	NA	NA	56891600	56882845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_56883013_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
transcript_60671.nic	chr17	+	3306	22	NIC	ENSMUSG00000071054.13	novel	3106	21	NA	NA	-109	0	combination_of_known_junctions	TRUE	canonical	3	80	junction_1	120.113627231518	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	7719	False	NA	35	True	AATAAA	-26	NA	56891715	56913294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56892044_56892186_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
transcript_60673.known	chr17	+	3106	21	FSM	ENSMUSG00000071054.13	ENSMUST00000095224.11	3106	21	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_6	66.4862955803675	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	8062	False	NA	35	True	AATAAA	-26	NA	56892058	56913294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
transcript_60679.nic	chr17	+	2697	20	NIC	ENSMUSG00000071054.13	novel	3106	21	NA	NA	66	0	intron_retention	FALSE	canonical	3	30	junction_6	132.182992439666	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	7894	False	NA	35	True	AATAAA	-26	NA	56891890	56913294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
transcript_60696.nic	chr17	+	963	8	NIC	ENSMUSG00000071054.13	novel	3122	21	NA	NA	41	2293	combination_of_known_junctions	FALSE	canonical	3	80	junction_1	153.809715465014	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAGAGGAGGAAGAAGA	7869	False	NA	NA	False	NA	NA	NA	56891865	56905816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56892044_56892186_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643
transcript_60697.nic	chr17	+	948	7	ISM	ENSMUSG00000071054.13	ENSMUST00000182533.8	3122	21	-67	7520	-67	2176	5prime_fragment	FALSE	canonical	3	422	junction_6	48.9931968066316	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGGTTCGGAGCTGGA	7910	False	NA	NA	False	AGTAAA	-2	NA	56891906	56905699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643
transcript_60698.nic	chr17	+	1106	7	ISM	ENSMUSG00000071054.13	ENSMUST00000182533.8	3122	21	-108	7403	41	2293	5prime_fragment	FALSE	canonical	3	422	junction_6	48.9931968066316	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAGAGGAGGAAGAAGA	7869	False	NA	NA	False	NA	NA	NA	56891865	56905816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643
transcript_607.known	chr1	+	1710	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_1	10.5	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTGTTTTGTTTGCCTC	NA	False	NA	22	True	ATTAAA	-12	NA	16735433	16748499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_16735730_16737891_16737998_16747191
transcript_60707.known	chr17	-	755	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	0	0	0	0	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTAGCTTGGATAGGAA	NA	False	NA	-32	True	TTTAAA	-27	NA	56916771	56914451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
transcript_60709.known	chr17	+	383	4	FSM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	0	0	0	multi-exon	FALSE	canonical	3	5436	junction_1	2487.77200634535	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGTGTATGTGTGA	NA	False	NA	-1	True	AATAAA	-12	NA	56920415	56921243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56920449_56920585_56920681_56920906_56921042_56921123
transcript_6071.known	chr1	-	4045	6	FSM	ENSMUSG00000026564.10	ENSMUST00000192369.6	4045	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	17.4768418199628	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCATTCTGGTCATTT	NA	False	NA	-1	True	ATTAAA	-19	NA	165955491	165925716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638_165954769_165955360
transcript_60711.nic	chr17	+	639	3	NIC	ENSMUSG00000057863.7	novel	383	4	NA	NA	-30	0	intron_retention	FALSE	canonical	3	5436	junction_1	2267	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGTGTATGTGTGA	NA	False	NA	-1	True	AATAAA	-12	NA	56920385	56921243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_56920449_56920585_56921042_56921123
transcript_60717.known	chr17	-	2951	18	FSM	ENSMUSG00000041168.11	ENSMUST00000047226.10	2951	18	0	0	0	0	multi-exon	FALSE	canonical	3	584	junction_15	77.1963747647298	1066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGCCTGAGTCTCAG	1571	False	NA	-12	True	AATAAA	-17	NA	56933887	56921296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56925457_56926171_56926393_56926985_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933480
transcript_6072.known	chr1	-	4018	6	FSM	ENSMUSG00000026564.10	ENSMUST00000085992.4	4018	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	17.4768418199628	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTCTTCATTCTGGT	NA	False	NA	-6	True	ATTAAA	-14	NA	165955465	165925721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638_165954773_165955360
transcript_6073.known	chr1	+	2227	8	FSM	ENSMUSG00000000544.15	ENSMUST00000166860.2	2227	8	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_7	70.4990953770301	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCTTTGTTCACCCAT	NA	False	NA	9	True	AATAAA	-18	NA	165958035	165994078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992866_165992923
transcript_60731.known	chr17	-	4362	16	FSM	ENSMUSG00000041168.11	ENSMUST00000233732.2	4362	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	205.931854963939	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGCCTGAGTCTCAG	1583	False	NA	-12	True	AATAAA	-17	NA	56933875	56921296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933365
transcript_60753.known	chr17	+	2567	17	FSM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	111.513574706176	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980364	57018764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56980412_56993005_56993062_56999520_56999722_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
transcript_60771.known	chr17	+	2373	16	FSM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_2	28.8962896503263	1014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980357	57018764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
transcript_6078.known	chr1	+	2515	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165957806	165994079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_60816.known	chr17	+	376	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233457.2	376	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	1255.16807196841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCAATGTCTTAAAGGCA	NA	False	NA	16	True	AATAAA	-16	NA	57024786	57029135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57024838_57028076_57028128_57028318_57028442_57028984
transcript_60818.known	chr17	+	545	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	0	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	54.2975342186201	1381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	18	True	AATAAA	-18	NA	57024766	57029137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
transcript_60819.known	chr17	+	493	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233832.2	493	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	1185.6477835625	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTAAAGGCAGGCTTG	NA	False	NA	22	True	AATAAA	-22	NA	57024782	57029141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57024943_57028034_57028128_57028358_57028442_57028984
transcript_60820.known	chr17	+	918	3	FSM	ENSMUSG00000002379.8	ENSMUST00000233233.2	918	3	0	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	33.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGCCATGGGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	57024797	57028998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57024943_57028034_57028128_57028318
transcript_60825.known	chr17	-	2226	2	FSM	ENSMUSG00000054723.7	ENSMUST00000067931.7	2226	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACTCTACCTTTTTTC	7568	False	NA	-6	True	AATAAA	-16	NA	57023977	57020935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57022818_57023633
transcript_60826.known	chr17	-	1965	2	FSM	ENSMUSG00000054723.7	ENSMUST00000164907.3	1965	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACTCTACCTTTTTTC	6865	False	NA	-6	True	AATAAA	-16	NA	57024680	57020935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57022818_57024597
transcript_60827.known	chr17	-	345	2	FSM	ENSMUSG00000054723.7	ENSMUST00000233400.2	345	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCGGCCAGCCACAGCC	6523	False	NA	NA	False	NA	NA	NA	57025022	57022622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57022818_57024872
transcript_60828.known	chr17	-	1023	3	FSM	ENSMUSG00000039481.6	ENSMUST00000044752.6	1023	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	5	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTCTGGTCGTTCATGC	NA	False	NA	-3	True	CATAAA	-15	NA	57064530	57058324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57058831_57059308_57059491_57064195
transcript_60829.known	chr17	+	2025	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	0	0	0	0	multi-exon	TRUE	canonical	3	220	junction_6	33.8230690505755	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	9244	False	NA	16	True	AATAAA	-17	NA	57071777	57076841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
transcript_60869.known	chr17	+	2749	10	FSM	ENSMUSG00000007603.10	ENSMUST00000233549.2	2749	10	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_2	26.7830792354676	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTCTCCTTGTGA	9250	False	NA	12	True	NA	NA	NA	57071783	57077093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
transcript_6088.nic	chr1	+	2202	6	NIC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	-21	0	intron_retention	FALSE	canonical	3	10	junction_1	77.1974092829546	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165957964	165994079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_165958174_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_6089.nnic	chr1	+	2357	6	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	21632	0	intron_retention	FALSE	canonical	2	8	junction_1	77.9717897704035	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165979667	165994079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_165980032_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_60901.known	chr17	-	3350	18	FSM	ENSMUSG00000024206.16	ENSMUST00000002444.15	3350	18	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_12	62.8192882463543	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCTGGTGTCCGTGTTTG	NA	False	NA	-4	True	NA	NA	NA	57138008	57082899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57106249_57106325_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
transcript_60904.nic	chr17	-	3368	17	NIC	ENSMUSG00000024206.16	novel	3350	18	NA	NA	-105	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_16	78.7249960304858	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCTGGTGTCCGTGTTTG	NA	False	NA	-4	True	NA	NA	NA	57138118	57082899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57106249_57106325_57110477_57110740_57111325_57111397_57112357_57112448_57137882
transcript_60905.known	chr17	-	3283	17	FSM	ENSMUSG00000024206.16	ENSMUST00000086801.7	3283	17	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_12	29.2883695986991	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGTCCGTGTTTGTTC	NA	False	NA	-1	True	NA	NA	NA	57138013	57082896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
transcript_60907.nic	chr17	-	3293	16	NIC	ENSMUSG00000024206.16	novel	3350	18	NA	NA	-105	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_15	59.2522292126353	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCTGGTGTCCGTGTTTG	NA	False	NA	-4	True	NA	NA	NA	57138118	57082899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57137882
transcript_60912.known	chr17	-	4141	5	FSM	ENSMUSG00000024206.16	ENSMUST00000233643.2	4141	5	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_3	14.3940091704848	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAGTAAGGT	NA	False	NA	NA	False	NA	NA	NA	57137939	57106908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
transcript_60914.nic	chr17	-	700	4	ISM	ENSMUSG00000024206.16	ENSMUST00000233643.2	4141	5	-205	4232	-131	-4232	5prime_fragment	FALSE	canonical	3	258	junction_2	15.2970585407784	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCATAGGCCCCTGAGA	NA	False	NA	-4	True	AATAAA	-11	NA	57138144	57111140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_57111397_57112357_57112448_57115233_57115326_57137882
transcript_60918.nic	chr17	+	2420	12	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1630	0	1604	0	3prime_fragment	FALSE	canonical	3	15	junction_6	15.5260378474249	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTCGCACCCCGAGGT	NA	False	NA	16	True	ATTAAA	-16	NA	57184106	57195904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
transcript_60922.nic	chr17	+	3028	11	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1630	1341	1604	-1341	internal_fragment	TRUE	canonical	3	15	junction_6	15.5244967712322	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCAAGGAGTGATGCACA	NA	False	NA	NA	False	NA	NA	NA	57184106	57194563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440
transcript_60925.nic	chr17	+	2749	11	NIC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1604	0	intron_retention	FALSE	canonical	3	25	junction_5	13.5606047062806	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTCGCACCCCGAGGT	NA	False	NA	16	True	ATTAAA	-16	NA	57184106	57195904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
transcript_6093.known	chr1	+	787	4	FSM	ENSMUSG00000000544.15	ENSMUST00000027847.7	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	86.0736119067085	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTTCTTTCTCGGTG	NA	False	NA	NA	False	AATAAA	-20	NA	165957985	165981705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165981478
transcript_60933.nnic	chr17	+	2810	10	NIC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1604	-1341	combination_of_known_splicesites	FALSE	canonical	3	8	junction_8	18.3370366630011	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCAAGGAGTGATGCACA	NA	False	NA	NA	False	NA	NA	NA	57184106	57194563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57192083_57192224_57193440
transcript_6094.known	chr1	-	1546	12	FSM	ENSMUSG00000040629.9	ENSMUST00000038782.4	1546	12	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	4.55453638177285	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCACTCTTGCTTGTT	NA	False	NA	-7	True	ATTAAA	-22	NA	166066313	166028953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_166029305_166029843_166029920_166032358_166032492_166033421_166033485_166053158_166053301_166053405_166053461_166054134_166054260_166061733_166061776_166062969_166063126_166064441_166064542_166065831_166065925_166066103
transcript_60950.nnic	chr17	+	3155	8	NIC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1677	-1341	intron_retention	FALSE	canonical	3	8	junction_6	18.372561618026	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCAAGGAGTGATGCACA	NA	False	NA	NA	False	NA	NA	NA	57184179	57194563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57190498_57190626_57190861_57192083_57192224_57193440
transcript_6096.known	chr1	+	2215	8	FSM	ENSMUSG00000026563.14	ENSMUST00000027846.8	2215	8	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_4	12.2357789173508	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTCCTGTTTATTCAA	NA	False	NA	15	True	AATAAA	-15	NA	166206665	166221190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_166207046_166209695_166209788_166209965_166210032_166214234_166214333_166216130_166216341_166217404_166217557_166219391_166219555_166220136
transcript_60963.known	chr17	-	3636	12	FSM	ENSMUSG00000024212.10	ENSMUST00000025053.10	3636	12	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_9	16.3510052260045	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTGGCCTGCCTTCAAT	6034	False	NA	-3	True	AATAAA	-15	NA	57242415	57199610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57201591_57201666_57201739_57201830_57201903_57201998_57202099_57203208_57203318_57204379_57204468_57206768_57207297_57209562_57209689_57212711_57212856_57226899_57226983_57233991_57234173_57242262
transcript_60967.nic	chr17	-	3636	11	NIC	ENSMUSG00000024212.10	novel	3636	12	NA	NA	-126	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	40.9921943789302	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTGGCCTGCCTTCAAT	5908	False	NA	-3	True	AATAAA	-15	NA	57242541	57199610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_57201591_57201666_57201739_57201830_57201903_57201998_57202099_57203208_57203318_57204379_57204468_57206768_57207297_57212711_57212856_57226899_57226983_57233991_57234173_57242262
transcript_60972.known	chr17	+	983	6	FSM	ENSMUSG00000002660.9	ENSMUST00000002735.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	1307	junction_4	119.017645750536	1421	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	33	True	ATTAAA	-21	NA	57297304	57303188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57300014_57300447_57300554_57302877
transcript_60976.known	chr17	+	917	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	15.369522511198	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAACAAAAAACC	371	False	NA	NA	False	NA	NA	NA	57304342	57306322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
transcript_60978.known	chr17	+	736	3	FSM	ENSMUSG00000002661.15	ENSMUST00000074141.14	736	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	221	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAGCAAGCAAAGAAAGA	367	False	NA	NA	False	NA	NA	NA	57304338	57306311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57304568_57305670_57305796_57305929
transcript_6098.known	chr1	-	4731	7	FSM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_5	17.625738755203	844	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTGTGGGTGCCTGGT	NA	False	NA	0	True	AATAAA	-32	NA	167112889	167050451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167112344
transcript_60980.known	chr17	-	1717	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318288	57310404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
transcript_60984.nic	chr17	-	1357	9	ISM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	-190	923	-190	-923	5prime_fragment	FALSE	canonical	3	510	junction_3	39.0686495159482	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGAAGCGCAGGAAAGG	NA	False	NA	NA	False	NA	NA	NA	57318478	57311327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
transcript_60985.nic	chr17	-	1024	7	ISM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	-110	1351	-110	-1351	5prime_fragment	FALSE	canonical	3	510	junction_1	42.5793377120875	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGGGCTCAGATGATG	NA	False	NA	NA	False	AAAAAG	-36	NA	57318398	57311755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
transcript_60993.known	chr17	-	3978	18	FSM	ENSMUSG00000007670.11	ENSMUST00000007814.10	3978	18	0	0	0	0	multi-exon	TRUE	canonical	3	570	junction_17	70.4455420481926	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTGTCCTGCTGGCTG	NA	False	NA	-9	True	AATAAA	-15	NA	57338488	57328050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57329971_57330058_57330137_57330212_57330414_57330504_57330594_57330826_57330937_57331010_57331172_57331246_57331493_57331788_57331892_57331979_57332079_57332307_57332407_57332495_57332671_57332879_57332938_57333842_57333915_57334048_57334099_57334816_57334857_57334955_57334995_57336041_57336139_57338147
transcript_60998.known	chr17	-	2521	24	FSM	ENSMUSG00000002668.9	ENSMUST00000011623.9	2521	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	12.6106445270463	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTATCTGGGGCTTTC	NA	False	NA	NA	False	AATAAA	-21	NA	57385510	57373054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57373642_57373731_57373943_57374048_57374117_57374592_57374701_57374788_57374834_57374916_57374950_57377112_57377185_57377407_57377449_57377529_57377624_57377918_57378024_57378571_57378698_57378787_57378890_57379008_57379055_57379335_57379437_57380772_57380884_57380973_57381028_57381113_57381180_57381273_57381355_57381492_57381563_57382368_57382489_57383646_57383697_57383817_57383862_57383940_57384006_57385389
transcript_61.known	SIRV1	-	1561	6	FSM	SIRV1A	SIRV101	1561	6	0	0	0	0	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
transcript_61000.known	chr17	-	3362	10	FSM	ENSMUSG00000046329.15	ENSMUST00000040280.14	3362	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	5.45916377623922	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGATTTTTAATTGTTT	NA	False	NA	-7	True	AATAAA	-16	NA	57366863	57350710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57352664_57354185_57354337_57359681_57359850_57360240_57360349_57360546_57360700_57360783_57360943_57362273_57362386_57363581_57363670_57365107_57365235_57366520
transcript_61009.known	chr17	+	778	5	FSM	ENSMUSG00000044279.16	ENSMUST00000169543.8	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	66.6520817379322	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTAGCTGTAAGCTCT	1578	False	NA	NA	False	AATAAA	-30	NA	57369282	57372917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089_57372234_57372608
transcript_61012.known	chr17	+	1206	4	FSM	ENSMUSG00000044279.16	ENSMUST00000097299.10	1206	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	33.4099120355355	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1526	False	NA	NA	False	AATAAA	-31	NA	57369230	57372918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089
transcript_61013.nic	chr17	+	1059	4	NIC	ENSMUSG00000044279.16	novel	778	5	NA	NA	-8	0	intron_retention	FALSE	canonical	3	51	junction_3	76.6130247122221	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTAGCTGTAAGCTCT	1518	False	NA	NA	False	AATAAA	-30	NA	57369222	57372917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_57369767_57370636_57370699_57372089_57372234_57372608
transcript_61015.known	chr17	+	373	3	FSM	ENSMUSG00000044279.16	ENSMUST00000163628.2	373	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTCATGCGAAAACTTCG	1803	False	NA	NA	False	NA	NA	NA	57369507	57372164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57369767_57370636_57370676_57372089
transcript_61017.known	chr17	+	868	3	FSM	ENSMUSG00000044279.16	ENSMUST00000163763.2	868	3	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_2	10.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGGCATCTAGCTGGTG	1594	False	NA	NA	False	NA	NA	NA	57369298	57372427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57369767_57370636_57370699_57372089
transcript_61019.known	chr17	+	1290	3	FSM	ENSMUSG00000035678.9	ENSMUST00000039490.9	1290	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAGCCTTTTATTATTT	25	False	NA	NA	False	AATAAA	-10	NA	57412324	57414757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57412861_57413249_57413287_57414040
transcript_61032.known	chr17	-	2064	17	FSM	ENSMUSG00000005823.10	ENSMUST00000005975.8	2064	17	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_12	32.0784560686764	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAATAAAGAAAAAGTG	NA	False	NA	-59	True	CATAAA	-13	NA	57554689	57541971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
transcript_61036.known	chr17	-	2405	17	FSM	ENSMUSG00000005823.10	ENSMUST00000233568.2	2405	17	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_12	26.3293443708726	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAAACGATCTGT	NA	False	NA	NA	False	NA	NA	NA	57554672	57541634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
transcript_61074.known	chr17	+	2224	14	FSM	ENSMUSG00000019487.12	ENSMUST00000019631.11	2224	14	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_12	30.2353686068634	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCGTGTGGAATAAATG	NA	False	NA	NA	False	GATAAA	-13	NA	57556481	57570665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
transcript_61084.nic	chr17	+	1125	9	ISM	ENSMUSG00000019487.12	ENSMUST00000224152.2	1812	15	-148	7688	-55	132	5prime_fragment	FALSE	canonical	3	344	junction_8	23.4197432735716	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAAGGTGGGGTCCGGAG	NA	False	NA	NA	False	NA	NA	NA	57556399	57562460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272
transcript_61085.known	chr17	+	2963	27	FSM	ENSMUSG00000034116.18	ENSMUST00000005889.16	2963	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.18421571679543	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGTCAAGGCCTCC	NA	False	NA	NA	False	NA	NA	NA	57586099	57635031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_57586402_57602981_57603099_57603551_57603611_57603699_57603769_57604048_57604158_57604245_57604342_57605771_57605841_57606100_57606205_57606841_57606942_57608180_57608277_57608860_57608930_57609073_57609161_57609264_57609351_57610014_57610148_57610833_57610944_57611823_57611926_57612279_57612378_57612458_57612482_57612662_57612709_57613106_57613244_57614033_57614100_57616451_57616484_57618783_57618901_57622243_57622332_57625627_57625743_57631641_57631794_57634650
transcript_61086.known	chr17	-	4113	7	FSM	ENSMUSG00000024228.13	ENSMUST00000025065.12	4113	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	5.17740818900302	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATGTAGCACATTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	59320367	59306612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_59309287_59310323_59310524_59313498_59313613_59314618_59314787_59316849_59317440_59318037_59318250_59320212
transcript_6109.known	chr1	+	1573	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	491	junction_3	23.6108496717552	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGTCTCCTGTTCAAA	NA	False	NA	15	True	AATAAA	-22	NA	167135946	167158354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
transcript_61092.nic	chr17	+	2850	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-98	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_1	24.9886393940413	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTATTAGCTAACCACAG	NA	False	NA	4	True	AATAAA	-15	NA	64170911	64446192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
transcript_61093.nic	chr17	+	2765	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_10	30.9070689904469	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTATTAGCTAACCACAG	NA	False	NA	4	True	AATAAA	-15	NA	64170993	64446192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288477_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
transcript_61099.known	chr17	+	2948	15	FSM	ENSMUSG00000000127.16	ENSMUST00000232945.2	2948	15	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_10	31.634471639627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAAAAAAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	64171009	64345583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288477_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564
transcript_61104.nic	chr17	+	563	4	ISM	ENSMUSG00000000127.16	ENSMUST00000232945.2	2948	15	-24	127066	-24	-11875	5prime_fragment	FALSE	canonical	3	108	junction_1	31.3155978174881	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAATTCTGCCAAAGAGAAA	NA	False	NA	NA	False	AATAAA	-6	NA	64170985	64218517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459
transcript_61109.known	chr17	+	2973	18	FSM	ENSMUSG00000000127.16	ENSMUST00000000129.14	2973	18	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_9	21.9155346145023	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTATATCTATAAATATAAT	NA	False	NA	NA	False	NA	NA	NA	64203016	64446458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
transcript_61111.known	chr17	-	4740	10	FSM	ENSMUSG00000024083.17	ENSMUST00000172818.8	4740	10	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	24	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTGTGTGACCCTATC	NA	False	NA	-3	True	AATAAA	-30	NA	64638911	64587999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64604718_64604905_64615616_64616662_64618165_64618367_64619995_64620114_64638790
transcript_61112.known	chr17	-	4488	9	FSM	ENSMUSG00000024083.17	ENSMUST00000172733.2	4488	9	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	42.6614580154031	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCATTTCTAATATTTAA	NA	False	NA	-18	True	AATAAA	-15	NA	64638860	64588014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64615616_64616662_64618165_64618367_64619995_64620114_64638790
transcript_61114.known	chr17	-	3559	5	FSM	ENSMUSG00000024083.17	ENSMUST00000232842.2	3559	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	27.4681633896407	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAGAGTGAATTGTT	NA	False	NA	NA	False	AATAAA	-36	NA	64638882	64602801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_64604905_64615616_64616662_64618165_64618367_64619995_64620114_64638790
transcript_61115.known	chr17	+	6991	22	FSM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	8.61970531560628	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTCTTCTGGAGTAATT	NA	False	NA	9	True	AATAAA	-19	NA	64907730	65062105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_64908866_64931522_64931775_64932301_64932447_64943478_64943651_64958190_64958319_64965895_64966070_64973731_64973919_64976406_64976585_64978842_64979046_64982059_64982243_64986746_64986862_64988549_64988621_65017698_65017865_65019246_65019469_65020556_65020680_65021592_65021708_65038198_65038333_65040718_65040861_65041928_65042063_65047674_65047879_65057778_65057890_65059408
transcript_61122.known	chr17	-	3369	6	FSM	ENSMUSG00000024091.10	ENSMUST00000024897.10	3369	6	0	0	0	0	multi-exon	FALSE	canonical	3	3309	junction_3	105.717737395387	1561	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTAGGAGACTTCATGT	2963	False	NA	NA	False	AATACA	-20	NA	65920550	65885321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_65887843_65889574_65889749_65899285_65899367_65900434_65900539_65901896_65902050_65920214
transcript_61129.known	chr17	-	3473	7	FSM	ENSMUSG00000056515.10	ENSMUST00000070673.9	3473	7	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_1	10.1775897605147	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGTCCTTTCCTCATT	NA	False	NA	0	True	AATAAA	-15	NA	66079747	65958723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_65961499_65974860_65974971_66003265_66003373_66004985_66005058_66024476_66024559_66029002_66029083_66079500
transcript_6113.known	chr1	+	2835	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTTGCCGTCTTAATT	NA	False	NA	6	True	ATTAAA	-18	NA	167177559	167196101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
transcript_61139.nic	chr17	+	3992	20	NIC	ENSMUSG00000061950.18	novel	775	7	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	92.3045363122675	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACCACCCACTTTGTTTC	NA	False	NA	17	True	AATAAA	-27	NA	66089707	66148851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_66090015_66090618_66090664_66110154_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
transcript_61147.known	chr17	+	3850	20	FSM	ENSMUSG00000061950.18	ENSMUST00000073104.11	3850	20	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	67.7698974676079	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGAGAAAGGCGTTTGT	NA	False	NA	35	True	AATAAA	-32	NA	66090349	66148921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_66090445_66090618_66090664_66110154_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
transcript_61151.known	chr17	+	3784	20	FSM	ENSMUSG00000061950.18	ENSMUST00000160664.8	3784	20	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	42.2814078706415	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGATGGGAGAAAGGCGT	NA	False	NA	31	True	AATAAA	-28	NA	66090360	66148917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_66090445_66090618_66090664_66110205_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
transcript_61163.known	chr17	-	3811	10	FSM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	0	0	0	0	multi-exon	FALSE	canonical	1	202	junction_3	142.261973611371	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCTTCTATTGTCCACT	NA	False	NA	NA	False	AATAAA	-31	NA	66191949	66155412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191672
transcript_61164.known	chr17	-	3799	10	FSM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	0	0	0	0	multi-exon	FALSE	canonical	1	126	junction_9	189.388163682976	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTGATTTTTGTACGG	NA	False	NA	NA	False	NA	NA	NA	66192793	66155760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66192180
transcript_61171.known	chr17	-	443	3	FSM	ENSMUSG00000024096.18	ENSMUST00000233399.2	443	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	331	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTGAAAGTCCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	66175046	66171686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66171728_66174526_66174826_66174943
transcript_61173.nic	chr17	-	753	3	NIC	ENSMUSG00000024096.18	novel	481	2	NA	NA	-112	119	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	319.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCATAAAGAAGAAAAGCACA	NA	False	NA	-87	True	AAAAAG	-45	NA	66191510	66171567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_66171728_66174526_66174826_66191216
transcript_61174.nic	chr17	-	750	3	ISM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	-14	16155	-14	119	5prime_fragment	FALSE	canonical	3	383	junction_2	139.5	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCATAAAGAAGAAAAGCACA	NA	False	NA	-87	True	AAAAAG	-45	NA	66191963	66171567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_66171728_66174526_66174826_66191672
transcript_61176.known	chr17	-	481	2	FSM	ENSMUSG00000024096.18	ENSMUST00000233784.2	481	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGCTGACTCTCAGGC	NA	False	NA	NA	False	AAAAAG	-28	NA	66191398	66174526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66174826_66191216
transcript_61177.nic	chr17	-	562	2	ISM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	-14	19142	-14	-28	5prime_fragment	FALSE	canonical	3	383	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAATTTAAGAAAAAGGA	NA	False	NA	NA	False	AAGAAA	-4	NA	66191963	66174554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_66174826_66191672
transcript_61180.known	chr17	-	4086	5	FSM	ENSMUSG00000024098.7	ENSMUST00000024906.6	4086	5	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	25.0636689253589	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATGTTTTTTATTAATTT	8694	False	NA	1	True	AATAAA	-19	NA	66258221	66230059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66233462_66236541_66236809_66244795_66244896_66255652_66255810_66258061
transcript_61184.nic	chr17	-	1681	9	ISM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	-25	21324	-9	0	5prime_fragment	FALSE	canonical	2	19	junction_6	22.0383189014044	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAGAATAAAAACAAAGAGA	NA	False	NA	NA	False	ATTAAA	-4	NA	66384093	66294016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
transcript_61185.known	chr17	-	1513	8	FSM	ENSMUSG00000034647.16	ENSMUST00000150766.2	1513	8	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	22.2481368171974	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGTTAAAAGAAAATTAAA	NA	False	NA	NA	False	AATACA	-12	NA	66384017	66294039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
transcript_61186.known	chr17	-	2342	8	FSM	ENSMUSG00000034647.16	ENSMUST00000143516.8	2342	8	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_5	22.376189969497	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAAAATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	66384039	66329883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
transcript_6119.known	chr1	-	1097	6	FSM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	22.7912263820971	616	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTTTCTTAAGCAATAG	4956	False	NA	NA	False	AATAAA	-16	NA	167221410	167199534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
transcript_61191.known	chr17	-	10821	13	FSM	ENSMUSG00000034647.16	ENSMUST00000038116.13	10821	13	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_10	19.1325783823184	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTTTTCTTTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	66384068	66272692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66277333_66279291_66279388_66283015_66283160_66286496_66286596_66289830_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
transcript_61194.known	chr17	-	1403	5	FSM	ENSMUSG00000034647.16	ENSMUST00000129756.8	1403	5	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_2	27.5170401751351	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATCTGTGTGTCTGTAT	NA	False	NA	NA	False	AATAAA	-16	NA	66384084	66343792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
transcript_61195.known	chr17	-	943	4	FSM	ENSMUSG00000034647.16	ENSMUST00000135136.8	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	25.5734237050888	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATTTTTTAGGAAATTA	NA	False	NA	NA	False	AATAAA	-30	NA	66384034	66344133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66344635_66356780_66356929_66359948_66360087_66383878
transcript_612.known	chr1	+	632	5	FSM	ENSMUSG00000025779.11	ENSMUST00000026881.11	632	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	0.707106781186548	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTCTGTTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	16758656	16779835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_16758844_16761907_16761998_16771018_16771148_16776396_16776450_16779662
transcript_61200.known	chr17	-	1697	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	0	0	0	0	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	664	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGGAGGTAATAGTGCC	5452	False	NA	NA	False	AATAAA	-18	NA	66408554	66385632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
transcript_61208.known	chr17	+	2905	11	FSM	ENSMUSG00000024101.16	ENSMUST00000072383.14	2905	11	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	29.1082462542833	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	3	True	NA	NA	NA	66418539	66427498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_66418645_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
transcript_61213.known	chr17	+	1831	11	FSM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39.5182236442885	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66418639	66426442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_66418727_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
transcript_61218.nic	chr17	+	2000	11	NIC	ENSMUSG00000024101.16	novel	1831	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	39.5182236442885	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66418640	66426442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_66418897_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
transcript_6123.known	chr1	-	2068	15	FSM	ENSMUSG00000026683.15	ENSMUST00000028000.13	2068	15	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_14	29.0531708199618	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	-9	True	AATAAA	-26	NA	169358997	169325879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
transcript_61246.known	chr17	+	4149	27	FSM	ENSMUSG00000035842.11	ENSMUST00000163605.3	4149	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	38.1668906050983	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGAACTTCATGATCAAG	NA	False	NA	21	True	ATTAAA	-16	NA	66430514	66459162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437464_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
transcript_61249.known	chr17	+	4141	27	FSM	ENSMUSG00000035842.11	ENSMUST00000224497.2	4141	27	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_22	18.327114778237	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCATGATCAAGTATGAGA	NA	False	NA	28	True	ATTAAA	-23	NA	66430607	66459169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
transcript_6125.known	chr1	-	2405	14	FSM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_13	32.5556419455247	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTGGGCAAATGGAT	NA	False	NA	NA	False	NA	NA	NA	169359033	169325502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
transcript_61263.known	chr17	+	4480	25	FSM	ENSMUSG00000035842.11	ENSMUST00000225687.2	4480	25	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_9	16.1136911248375	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGATTGAAATGGTAAGG	NA	False	NA	NA	False	NA	NA	NA	66430565	66458699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66457048_66457325_66457405_66457568_66457724_66457797
transcript_6127.known	chr1	-	1271	11	FSM	ENSMUSG00000026683.15	ENSMUST00000192248.2	1271	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_10	33.1324614238061	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169358980	169337685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
transcript_61274.known	chr17	-	7221	14	FSM	ENSMUSG00000052105.18	ENSMUST00000086693.12	7221	14	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_12	28.2669020495577	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCTTGGTGTCACCGTTT	NA	False	NA	-13	True	AATAAA	-21	NA	66756745	66643976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
transcript_61279.nic	chr17	-	4797	11	ISM	ENSMUSG00000052105.18	ENSMUST00000097291.10	7274	15	-44	10980	-44	0	5prime_fragment	FALSE	canonical	3	123	junction_9	30.9258791305922	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGAAATTGTAGTACAGT	NA	False	NA	-5	True	AATAAA	-19	NA	66756789	66654960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
transcript_61280.nnic	chr17	-	4830	11	NNC	ENSMUSG00000052105.18	novel	7221	14	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	57.4560701753957	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGAAATTGTAGTACAGT	NA	False	NA	-5	True	AATAAA	-19	NA	66756789	66654960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123_66687465_66692854_66692915_66743074_66743234_66745161_66745387_66755311
transcript_61283.nnic	chr17	-	3330	9	NIC	ENSMUSG00000052105.18	novel	7221	14	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_5	65.5858216385218	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGAAATTGTAGTACAGT	NA	False	NA	-5	True	AATAAA	-19	NA	66756789	66654960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66692854_66692915_66743074_66743234_66745161_66745387_66755311
transcript_61288.nic	chr17	-	5007	7	ISM	ENSMUSG00000052105.18	ENSMUST00000097291.10	7274	15	-44	29857	-44	-499	5prime_fragment	FALSE	canonical	3	123	junction_5	16.2044232644465	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCATGAGTTCTTTTCT	NA	False	NA	NA	False	AATAAA	-6	NA	66756789	66673837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_66675456_66684847_66685007_66686123_66687432_66692854_66692915_66743074_66743234_66745161_66745387_66755311
transcript_6129.nic	chr1	-	1216	10	ISM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	32	12183	-4	0	5prime_fragment	FALSE	canonical	3	65	junction_9	38.1284379142101	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169359001	169337685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
transcript_61292.known	chr17	-	611	4	FSM	ENSMUSG00000052105.18	ENSMUST00000127259.2	611	4	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_2	12.5521135891752	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCAAAAAAACAAAACAAAAC	NA	False	NA	NA	False	TTTAAA	-45	NA	66755364	66692740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66692915_66743074_66743234_66745161_66745387_66755311
transcript_61294.nic	chr17	-	2306	7	NIC	ENSMUSG00000023460.14	novel	2069	6	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	101.840425284963	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAATTTGCCGTGTGTTT	NA	False	NA	-4	True	AATAAA	-22	NA	66826771	66801506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66811983_66812174_66813027_66813089_66826342
transcript_61295.nic	chr17	-	1811	7	NIC	ENSMUSG00000023460.14	novel	2069	6	NA	NA	-7	-436	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	101.840425284963	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCGTTTTTGAAACTATA	NA	False	NA	NA	False	AAGAAA	-3	NA	66826712	66801942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66811983_66812174_66813027_66813089_66826342
transcript_61296.known	chr17	-	2010	6	FSM	ENSMUSG00000023460.14	ENSMUST00000167962.2	2010	6	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_3	22.1720544830649	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAATTTGCCGTGTGTTT	NA	False	NA	-4	True	AATAAA	-22	NA	66826665	66801506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66813027_66813089_66826342
transcript_61298.known	chr17	-	2544	4	FSM	ENSMUSG00000024105.4	ENSMUST00000024914.4	2544	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCCTCGCTATGCATG	NA	False	NA	NA	False	NA	NA	NA	66901616	66861499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_66863260_66866541_66867016_66900143_66900279_66901441
transcript_61300.known	chr17	+	9526	63	FSM	ENSMUSG00000032796.9	ENSMUST00000035471.9	9526	63	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_11	42.4970342357505	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGGTCTCCTCTTTTGA	NA	False	NA	22	True	ATTAAA	-22	NA	68004253	68129642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_68004412_68023688_68023860_68024156_68024270_68044468_68044712_68045705_68045886_68049019_68049110_68050269_68050388_68052040_68052220_68052844_68052951_68053742_68053904_68055038_68055180_68057511_68057686_68059376_68059479_68059772_68059985_68060745_68060858_68063661_68063773_68068597_68068726_68070765_68070853_68071624_68071837_68073947_68074055_68074379_68074561_68075294_68075432_68076374_68076612_68077950_68078095_68079656_68079837_68080681_68080868_68081458_68081587_68082765_68082887_68083902_68084041_68086043_68086166_68087523_68087611_68087873_68088068_68089014_68089158_68090988_68091079_68092045_68092158_68092992_68093156_68097813_68098022_68098204_68098322_68098439_68098604_68101189_68101326_68102194_68102289_68103691_68103809_68105521_68105705_68105977_68106133_68107753_68107898_68109890_68110025_68111394_68111546_68112356_68112482_68114772_68114924_68116205_68116351_68116834_68116977_68117064_68117180_68117324_68117496_68118433_68118586_68119320_68119507_68120847_68120984_68122172_68122286_68122849_68123040_68123997_68124157_68124521_68124676_68125578_68125713_68128512_68128736_68129283
transcript_6131.known	chr1	+	1731	4	FSM	ENSMUSG00000070532.6	ENSMUST00000094348.4	1731	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTCTGGTCTCCTTTTG	NA	False	NA	NA	False	GATAAA	-14	NA	169756216	169762222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_169756573_169757487_169757730_169760563_169760685_169761210
transcript_61312.known	chr17	+	3188	20	FSM	ENSMUSG00000024044.20	ENSMUST00000225977.2	3188	20	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_19	11.3154222706638	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTTACCCCAGATTAGA	NA	False	NA	NA	False	NA	NA	NA	69463839	69596319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69594606_69594724_69595845
transcript_61317.nic	chr17	+	2909	19	NIC	ENSMUSG00000024044.20	novel	3188	20	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_18	11.188066835078	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAACTTTTAATTTTCAC	NA	False	NA	NA	False	ATTAAA	-20	NA	69463776	69596094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69595845
transcript_61318.nic	chr17	+	4068	19	NIC	ENSMUSG00000024044.20	novel	4073	22	NA	NA	-235	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_18	11.188066835078	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTCTCGTCTTCCATG	NA	False	NA	16	True	AATAAA	-17	NA	69463503	69596980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69595845
transcript_61321.nic	chr17	+	3831	19	NIC	ENSMUSG00000024044.20	novel	4073	22	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	13.0085442007252	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTCTCGTCTTCCATG	NA	False	NA	16	True	AATAAA	-17	NA	69463686	69596980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569174_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69595845
transcript_61329.known	chr17	+	3966	13	FSM	ENSMUSG00000024044.20	ENSMUST00000225316.2	3966	13	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_11	6.11180551610297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAAAGCTAGGCCCTTA	NA	False	NA	NA	False	NA	NA	NA	69463772	69579843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555624_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605
transcript_6133.known	chr1	-	4612	9	FSM	ENSMUSG00000026675.13	ENSMUST00000027989.13	4612	9	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_1	8.48528137423857	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTAGACTCAGTTAATTT	NA	False	NA	-1	True	AATAAA	-18	NA	169796810	169777103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_169780704_169783503_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
transcript_61335.known	chr17	+	3952	20	FSM	ENSMUSG00000024044.20	ENSMUST00000225740.2	3952	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	15.817694079207	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCGTCTTCCATGTGAA	NA	False	NA	20	True	AATAAA	-21	NA	69463738	69596984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_69463906_69514853_69515072_69517180_69517379_69545339_69545445_69546741_69546785_69550582_69550659_69554530_69554750_69555626_69555713_69560390_69560544_69564365_69564464_69566007_69566184_69569120_69569342_69577605_69577660_69581698_69581891_69591533_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69594606_69594724_69595845
transcript_61342.known	chr17	-	764	3	FSM	ENSMUSG00000100572.2	ENSMUST00000187090.2	764	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	7	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCCAGAGGAACGTATG	NA	False	NA	NA	False	NA	NA	NA	69584203	69582356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_69582902_69583120_69583191_69584054
transcript_61343.nnic	chr17	-	982	4	NNC	ENSMUSG00000117069.2	novel	1128	2	NA	NA	614	1454	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.16024689946929	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCTTTTGTATCAAT	NA	False	NA	NA	False	AATAAA	-16	NA	69690589	69687744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_69688029_69688199_69688384_69689198_69689294_69690170
transcript_61344.known	chr17	+	3743	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112674.8	3743	3	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	58	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTTGTATTTGTGTT	NA	False	NA	NA	False	AAAACA	-43	NA	69690044	69697745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_69690265_69692415_69692500_69694306
transcript_61348.known	chr17	+	3625	3	FSM	ENSMUSG00000049672.16	ENSMUST00000062369.14	3625	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	68.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTTGTATTTGTGTT	NA	False	NA	NA	False	AAAACA	-43	NA	69690313	69697745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_69690416_69692415_69692500_69694306
transcript_61352.known	chr17	+	4358	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112676.4	4358	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	80	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATAGGCTATCTTTCCA	NA	False	NA	NA	False	AAGAAA	-13	NA	69690834	69698194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_69691221_69692415_69692500_69694306
transcript_61359.known	chr17	+	385	2	FSM	ENSMUSG00000093622.2	ENSMUST00000175668.2	385	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAGAAAATTTTAAATAAA	280	False	NA	-4	True	ATTAAA	-8	NA	71141658	71143039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_71141798_71142793
transcript_61364.known	chr17	-	1455	3	FSM	ENSMUSG00000047407.18	ENSMUST00000186358.6	1455	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	139.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71158064	71151205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71152236_71153166_71153394_71157866
transcript_61367.known	chr17	-	923	3	FSM	ENSMUSG00000047407.18	ENSMUST00000127719.2	923	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	419.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGAGCTTCAGGCCAAAC	NA	False	NA	NA	False	NA	NA	NA	71156785	71151722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71152268_71153166_71153394_71156634
transcript_61368.known	chr17	-	1631	3	FSM	ENSMUSG00000047407.18	ENSMUST00000059775.15	1631	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_2	253.5	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71158202	71151199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71152268_71153166_71153394_71157866
transcript_61370.known	chr17	-	1388	3	FSM	ENSMUSG00000047407.18	ENSMUST00000118283.8	1388	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	292	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71160541	71151205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71152268_71153166_71153394_71160442
transcript_61373.known	chr17	+	473	1	FSM	ENSMUSG00000100865.3	ENSMUST00000184151.3	473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	242	False	NA	NA	False	AATAAA	-15	NA	71182834	71183307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_71182800_71183300
transcript_61380.known	chr17	-	2143	4	FSM	ENSMUSG00000034868.10	ENSMUST00000038446.10	2143	4	0	0	0	0	multi-exon	FALSE	canonical	3	1955	junction_2	187.919013289118	1138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTTGAGGTCTATGGC	3044	False	NA	NA	False	NA	NA	NA	71297885	71280127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71281492_71282453_71282616_71284042_71284242_71297467
transcript_61383.known	chr17	-	1937	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	0	0	0	0	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	1617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGTTGTCATGTTAAT	1927	False	NA	NA	False	TATAAA	-26	NA	71309549	71300650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
transcript_61384.known	chr17	-	804	4	FSM	ENSMUSG00000024048.16	ENSMUST00000123686.8	804	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	1386.16072500831	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGCCCAATGCATGCCC	1603	False	NA	NA	False	NA	NA	NA	71309873	71301543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309666
transcript_61389.nic	chr17	+	4175	20	NIC	ENSMUSG00000024052.18	novel	1112	11	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_7	6.20606440967734	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGGCTATTTTCCAGAT	NA	False	NA	NA	False	NA	NA	NA	71490526	71555237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_71490740_71521958_71522160_71529049_71529146_71531934_71532237_71536302_71536411_71537266_71537391_71538177_71538515_71540822_71540923_71544380_71544569_71545602_71545697_71546078_71546149_71547806_71547897_71548638_71548722_71549620_71549766_71550282_71550432_71550919_71551007_71551766_71551920_71552113_71552229_71553410_71553515_71553821
transcript_6139.known	chr1	-	1446	8	FSM	ENSMUSG00000026675.13	ENSMUST00000111353.4	1446	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	6.15115718331742	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACTTCTCTGTGATCTT	NA	False	NA	NA	False	AATAAA	-24	NA	169796810	169783069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
transcript_61396.nic	chr17	-	1175	4	ISM	ENSMUSG00000024053.12	ENSMUST00000233148.2	758	5	12181	-843	-70	0	3prime_fragment	FALSE	canonical	2	7	junction_2	4.49691252107735	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTCCTTTTCTGTATTT	NA	False	NA	-7	True	AATAAA	-15	NA	71563411	71559168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_71560089_71562113_71562243_71562974_71563008_71563318
transcript_61397.known	chr17	-	7052	48	FSM	ENSMUSG00000024054.15	ENSMUST00000127430.2	7052	48	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_42	32.1184571856639	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGGTTTCCTTGATTGA	NA	False	NA	NA	False	AATAAA	-29	NA	71782338	71651483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71652361_71655880_71655996_71656584_71656744_71660380_71660553_71665131_71665203_71665342_71665453_71667021_71667213_71668835_71668959_71670014_71670101_71672083_71672204_71672340_71672468_71676802_71676956_71677218_71677351_71677903_71677992_71684008_71684074_71685142_71685259_71686536_71686695_71687123_71687204_71688326_71688453_71693939_71694108_71696737_71696857_71697421_71697511_71698346_71698496_71701711_71701940_71705546_71705685_71707053_71707194_71710092_71710166_71714161_71714259_71718764_71718910_71722029_71722150_71722595_71722674_71733149_71733264_71733434_71733518_71734431_71734539_71735166_71735281_71736456_71736652_71738216_71738401_71743700_71743822_71747898_71748110_71748870_71748962_71750876_71751044_71755507_71755628_71755726_71755842_71762599_71762731_71763412_71763496_71770756_71770919_71772588_71772665_71781973
transcript_61400.nic	chr17	-	2507	17	ISM	ENSMUSG00000024054.15	ENSMUST00000127430.2	7052	48	-151	81749	-151	22344	5prime_fragment	FALSE	canonical	3	108	junction_11	13.8293166859393	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGGAAGCAATGCAGAAAC	NA	False	NA	NA	False	NA	NA	NA	71782489	71733232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_71733264_71733434_71733518_71734431_71734539_71735166_71735281_71736456_71736652_71738216_71738401_71743700_71743822_71747898_71748110_71748870_71748962_71750876_71751044_71755507_71755628_71755726_71755842_71762599_71762731_71763412_71763496_71770756_71770919_71772588_71772665_71781973
transcript_61401.nic	chr17	-	2814	15	ISM	ENSMUSG00000024054.15	ENSMUST00000127430.2	7052	48	-606	82982	-606	21111	5prime_fragment	FALSE	canonical	3	108	junction_9	14.6670531798174	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATTAGGAAATATGTAGAA	NA	False	NA	NA	False	AATAAA	-45	NA	71782944	71734465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_71734539_71735166_71735281_71736456_71736652_71738216_71738401_71743700_71743822_71747898_71748110_71748870_71748962_71750876_71751044_71755507_71755628_71755726_71755842_71762599_71762731_71763412_71763496_71770756_71770919_71772588_71772665_71781973
transcript_61405.nic	chr17	-	1284	8	ISM	ENSMUSG00000024054.15	ENSMUST00000127430.2	7052	48	-169	99497	-169	4596	5prime_fragment	FALSE	canonical	3	108	junction_2	15.2476160732872	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAGAGAAAGACAGCTT	NA	False	NA	NA	False	NA	NA	NA	71782507	71750980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_71751044_71755507_71755628_71755726_71755842_71762599_71762731_71763412_71763496_71770756_71770919_71772588_71772665_71781973
transcript_61407.nic	chr17	-	1181	7	ISM	ENSMUSG00000024054.15	ENSMUST00000127430.2	7052	48	-198	104093	-198	0	5prime_fragment	FALSE	canonical	3	108	junction_1	15.1373342728794	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAGATTTTGAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	71782536	71755576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_71755628_71755726_71755842_71762599_71762731_71763412_71763496_71770756_71770919_71772588_71772665_71781973
transcript_61410.known	chr17	-	2201	17	FSM	ENSMUSG00000024056.11	ENSMUST00000024851.10	2201	17	0	0	0	0	multi-exon	TRUE	canonical	3	248	junction_10	48.8427003246135	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCCCCTCCCATTTCTG	NA	False	NA	-11	True	AATAAA	-19	NA	71833852	71803094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
transcript_61415.nic	chr17	-	1608	13	ISM	ENSMUSG00000024056.11	ENSMUST00000232863.2	2009	16	-38	8627	12	3909	5prime_fragment	FALSE	canonical	3	248	junction_6	47.2851867807339	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTATGGCACGGGTGAC	NA	False	NA	NA	False	AATAAA	-31	NA	71833840	71811760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
transcript_61419.nic	chr17	-	1018	10	ISM	ENSMUSG00000024056.11	ENSMUST00000232863.2	2009	16	-18	15327	-18	-2791	5prime_fragment	FALSE	canonical	3	248	junction_3	29.4358478016596	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAGCGTCCTTACAAGC	NA	False	NA	NA	False	AAGAAA	-1	NA	71833820	71818460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
transcript_61422.nic	chr17	-	957	9	ISM	ENSMUSG00000024056.11	ENSMUST00000232863.2	2009	16	-32	16305	18	-3769	5prime_fragment	FALSE	canonical	3	248	junction_2	30.9250606304984	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACTAAATGAACAGATTGC	NA	False	NA	NA	False	AAAACA	-3	NA	71833834	71819438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
transcript_61426.known	chr17	-	1852	1	FSM	ENSMUSG00000024056.11	ENSMUST00000233011.2	1852	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAGAAAAAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	71833799	71831947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71831900_71833800
transcript_61428.nnic	chr17	-	1391	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.8807492274273	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905769	71895551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_71895980_71897482_71897518_71898852_71898942_71904930
transcript_61429.nnic	chr17	-	1170	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.8807492274273	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905762	71895551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_71895980_71897482_71897518_71898852_71898942_71905144
transcript_61430.known	chr17	-	781	3	FSM	ENSMUSG00000085492.8	ENSMUST00000143828.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	30	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905248	71895551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_71895980_71897482_71897518_71904930
transcript_61431.nnic	chr17	-	1097	3	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	31	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905778	71895551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_71895980_71897482_71897518_71905144
transcript_61434.known	chr17	+	3450	18	FSM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_7	117.232918130641	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGTCTCGTGGTGTATA	NA	False	NA	18	True	AATAAA	-18	NA	71923209	71966026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
transcript_61435.known	chr17	+	402	4	FSM	ENSMUSG00000041057.11	ENSMUST00000234581.2	402	4	0	0	0	0	multi-exon	FALSE	canonical	3	1489	junction_2	91.8561677600125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGGTTGGCCTAGAGGC	NA	False	NA	62	True	NA	NA	NA	71956889	71960517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_71957044_71957562_71957627_71959775_71959890_71960447
transcript_61438.nic	chr17	+	2593	16	NIC	ENSMUSG00000024059.11	novel	3357	14	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	17.6022725805505	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAGGTCCCAAGAAAATTT	NA	False	NA	NA	False	NA	NA	NA	72089610	72163772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_72089846_72096862_72097011_72105951_72106092_72107793_72107888_72108769_72108932_72110550_72110670_72113499_72113737_72117841_72117978_72131684_72131826_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72156886_72156960_72163222
transcript_61439.nic	chr17	+	4171	16	NIC	ENSMUSG00000024059.11	novel	3357	14	NA	NA	-1	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	17.6022725805505	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTGTCTTTTACCCTCT	NA	False	NA	8	True	AATAAA	-21	NA	72089610	72165350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_72089846_72096862_72097011_72105951_72106092_72107793_72107888_72108769_72108932_72110550_72110670_72113499_72113737_72117841_72117978_72131684_72131826_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72156886_72156960_72163222
transcript_61441.nic	chr17	+	2241	15	NIC	ENSMUSG00000024059.11	novel	3357	14	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.6679761390347	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCACTGTGTGTGTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	72089610	72157157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_72089846_72096862_72097011_72105951_72106092_72107793_72107888_72108769_72108932_72110550_72110670_72113499_72113737_72117841_72117978_72131684_72131826_72134686_72134777_72135501_72135646_72138199_72138335_72141178_72141303_72144688_72144754_72156886
transcript_61451.known	chr17	+	3120	3	FSM	ENSMUSG00000039770.7	ENSMUST00000045174.7	3120	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	49	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATTCA	745	False	NA	NA	False	NA	NA	NA	73143447	73158190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_73143787_73153273_73153439_73155574
transcript_61453.known	chr17	+	2419	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233210.2	2419	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	120.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGTACAGAACTGCTACT	1605	False	NA	8	True	AATAAA	-17	NA	73144307	73157432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_73144704_73153273_73153439_73155574
transcript_61455.known	chr17	+	704	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233886.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	156.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCCTTCACTGAAAACAAA	1828	False	NA	NA	False	GATAAA	-17	NA	73144530	73155829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_73144815_73153273_73153439_73155574
transcript_61457.known	chr17	+	3069	3	FSM	ENSMUSG00000024063.14	ENSMUST00000024857.14	3069	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	4	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGGGTTCCTTCC	NA	False	NA	10	True	AATAAA	-19	NA	73225299	73248942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_73225574_73228182_73228286_73246250
transcript_61460.nic	chr17	+	4455	6	NIC	ENSMUSG00000054469.15	novel	4467	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	15.992498241363	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGATTCTGTTTTT	NA	False	NA	16	True	AATAAA	-26	NA	73414979	73550363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_73415152_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
transcript_61461.known	chr17	+	4467	6	FSM	ENSMUSG00000054469.15	ENSMUST00000067545.8	4467	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	24.2866218317822	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGATTCTGTTTTT	NA	False	NA	16	True	AATAAA	-26	NA	73414988	73550363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_73415173_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
transcript_61462.known	chr17	+	3659	6	FSM	ENSMUSG00000024065.9	ENSMUST00000024860.9	3659	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	1.35646599662505	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTGGTGACTGAGCAT	NA	False	NA	3	True	AATACA	-20	NA	74111835	74139089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_74112465_74123225_74123403_74127472_74127571_74134144_74134558_74135040_74135206_74136912
transcript_61467.nic	chr17	-	1531	10	NIC	ENSMUSG00000058704.10	novel	3163	9	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	80.0302411977675	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	74602535	74507696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686_74601765_74602407
transcript_61469.known	chr17	-	3163	9	FSM	ENSMUSG00000058704.10	ENSMUST00000233514.3	3163	9	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_3	25.6502923959942	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTTTGTTTATTTG	NA	False	NA	NA	False	ATTAAA	-35	NA	74601858	74506030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686
transcript_61470.nnic	chr17	-	1540	10	NNC	ENSMUSG00000058704.10	novel	3163	9	NA	NA	-268	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	89.3656657907399	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	74602126	74507696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686_74601802_74602026
transcript_61477.known	chr17	-	1210	7	FSM	ENSMUSG00000058704.10	ENSMUST00000232989.2	1210	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	104.977378515564	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	74601796	74507696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74562222_74562292_74565418_74565501_74601686
transcript_61478.known	chr17	-	622	5	FSM	ENSMUSG00000024067.15	ENSMUST00000112571.5	622	5	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	1057.76707620345	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAGAACCTTCAGGACCA	NA	False	NA	NA	False	NA	NA	NA	74623403	74606650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623214
transcript_61479.known	chr17	-	734	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTTGTATATGACAAGT	NA	False	NA	-10	True	AATAAA	-24	NA	74623458	74606468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
transcript_61482.known	chr17	-	512	4	FSM	ENSMUSG00000024067.15	ENSMUST00000233187.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	1032.98047738893	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATAGTTGTTGTA	NA	False	NA	-20	True	AATAAA	-14	NA	74623389	74606478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_74606820_74622896_74622945_74623038_74623112_74623339
transcript_61486.known	chr17	-	694	4	FSM	ENSMUSG00000024067.15	ENSMUST00000232687.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	2414	junction_1	149.934059580278	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	-18	True	AATAAA	-16	NA	74623198	74606476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038
transcript_61487.known	chr17	+	2066	17	FSM	ENSMUSG00000024068.9	ENSMUST00000224711.2	2066	17	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	31.4552633711753	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTCAAGGCCTTCTT	9841	False	NA	16	True	AATAAA	-20	NA	74645981	74695481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_74646441_74658947_74659032_74663080_74663165_74666248_74666345_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
transcript_61489.known	chr17	+	4672	17	FSM	ENSMUSG00000024068.9	ENSMUST00000024869.8	4672	17	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	37.2180546744453	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATAGTCTTCGATATT	9867	False	NA	33	True	AATAAA	-24	NA	74646007	74698110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_74646441_74658944_74659032_74663080_74663165_74666248_74666345_74674242_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
transcript_6149.known	chr1	-	2283	11	FSM	ENSMUSG00000026670.16	ENSMUST00000027981.8	2283	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_3	76.9519330491444	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTGTTTCTACCTTA	NA	False	NA	-5	True	AATAAA	-15	NA	170002515	169969571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_169970142_169970965_169971033_169975564_169975613_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
transcript_61498.known	chr17	+	1938	14	FSM	ENSMUSG00000024069.15	ENSMUST00000179074.9	1938	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.5571327177388	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGAGGTATATTCTACT	NA	False	NA	9	True	AATAAA	-22	NA	74702615	74731004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714200_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
transcript_61514.known	chr17	+	2133	6	FSM	ENSMUSG00000024072.10	ENSMUST00000024873.7	2133	6	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_2	44.687358391384	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAACCAAACAGGTA	NA	False	NA	NA	False	NA	NA	NA	74796487	74807272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_74796790_74799340_74799501_74800922_74801095_74803584_74803663_74805303_74805418_74805965
transcript_61520.nnic	chr17	-	400	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	234	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	48.5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTGGTCTCAGTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	74834405	74826659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_74826911_74830509_74830574_74834320
transcript_61528.nic	chr17	+	1859	9	ISM	ENSMUSG00000024073.17	ENSMUST00000182944.8	14610	73	-198	123044	-25	12490	5prime_fragment	FALSE	canonical	3	29	junction_5	4.78114787472632	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAAAGGAAAAGCACCAGG	NA	False	NA	NA	False	NA	NA	NA	74835264	74886334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_74835797_74853231_74853414_74855707_74855846_74864895_74865090_74868145_74868258_74869013_74869097_74872785_74873170_74880567_74880627_74886159
transcript_61529.nic	chr17	+	2806	9	ISM	ENSMUSG00000024073.17	ENSMUST00000182944.8	14610	73	-113	122012	60	13522	5prime_fragment	FALSE	canonical	3	29	junction_5	4.78114787472632	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACATTTCTACGCTTG	NA	False	NA	NA	False	NA	NA	NA	74835349	74887366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_74835797_74853231_74853414_74855707_74855846_74864895_74865090_74868145_74868258_74869013_74869097_74872785_74873170_74880567_74880627_74886159
transcript_6153.known	chr1	-	2311	10	FSM	ENSMUSG00000026670.16	ENSMUST00000111350.10	2311	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	66.4981202741852	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAATGCATAAAAACAAGTG	NA	False	NA	60	True	AATACA	-22	NA	170002526	169969506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_169970142_169970965_169971033_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
transcript_61530.nic	chr17	+	832	4	ISM	ENSMUSG00000024073.17	ENSMUST00000182382.2	2804	6	-167	8884	60	-4136	5prime_fragment	FALSE	canonical	3	30	junction_3	6.23609564462324	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAACTTAAGAAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	74835349	74864960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_74835797_74853231_74853414_74855707_74855846_74864895
transcript_61535.known	chr17	+	2651	20	FSM	ENSMUSG00000024078.8	ENSMUST00000234568.2	2651	20	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_19	29.4919116570221	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTTATTTTGTGATGTT	NA	False	NA	6	True	AATAAA	-17	NA	75024906	75170561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170331
transcript_61540.nnic	chr17	+	2673	19	NIC	ENSMUSG00000024078.8	novel	2838	20	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	36.8121692171099	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTTATTTTGTGATGTT	NA	False	NA	6	True	AATAAA	-17	NA	75024746	75170561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_75025007_75025628_75025807_75028515_75028646_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
transcript_61545.known	chr17	+	6235	35	FSM	ENSMUSG00000001870.17	ENSMUST00000234490.2	6235	35	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	7.04931958237066	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATTTGAGTGTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	75312562	75698323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_75313357_75314325_75314397_75372905_75373198_75458259_75458430_75486031_75486200_75532150_75532376_75533961_75534237_75550722_75550726_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583390_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
transcript_61549.known	chr17	-	2817	8	FSM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	28.1765570527511	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGGAGTTTTCTTTTA	NA	False	NA	-1	True	AATAAA	-22	NA	75858941	75844080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
transcript_6155.known	chr1	-	7864	8	FSM	ENSMUSG00000026667.15	ENSMUST00000027979.14	7864	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	8.63311138842179	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCTCTTATTTCTTTTC	NA	False	NA	NA	False	AATAAA	-18	NA	170042966	170020988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170027583_170032683_170032773_170034682_170034782_170034914_170034992_170036223_170036319_170038599_170038792_170039804_170040098_170042541
transcript_61555.known	chr17	-	2809	7	FSM	ENSMUSG00000002017.11	ENSMUST00000234785.2	2809	7	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	30.3296701084745	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCCTTGCTCTGGGAGT	NA	False	NA	-10	True	AATAAA	-13	NA	75858857	75844089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
transcript_61558.known	chr17	-	2041	9	FSM	ENSMUSG00000056121.17	ENSMUST00000112487.3	2041	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	124.244718197596	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725581	78685313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78694419_78694501_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_61559.known	chr17	-	1939	8	FSM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_3	15.727267365169	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725560	78685313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_61562.nic	chr17	-	1203	6	ISM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	-28	6696	-7	-6695	5prime_fragment	FALSE	canonical	3	258	junction_1	18.0731845561318	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGCCGAGTTGAGTGT	NA	False	NA	NA	False	AGTAAA	-17	NA	78725588	78692009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_61564.known	chr17	-	1516	7	FSM	ENSMUSG00000056121.17	ENSMUST00000234029.2	1516	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	107.707938426097	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGAGTTTTTGTTCGGG	NA	False	NA	1	True	AATAAA	-20	NA	78725512	78685306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_78685859_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_61566.known	chr17	-	6388	36	FSM	ENSMUSG00000039414.11	ENSMUST00000097281.4	6388	36	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_23	13.6878912673552	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTCATACAGTACATTCT	NA	False	NA	NA	False	AATAAA	-24	NA	79142753	79060326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_79060766_79062639_79062854_79064291_79064444_79067844_79068070_79069428_79069696_79070361_79070507_79072756_79072885_79074308_79074564_79075794_79076033_79080966_79081147_79095633_79095703_79098863_79099046_79102523_79102776_79103250_79103491_79103812_79103958_79109041_79109212_79110800_79110991_79113375_79113536_79115758_79115950_79117936_79118043_79120523_79120700_79121500_79121665_79122918_79123029_79123660_79123761_79124901_79125055_79126234_79126347_79128049_79128301_79128843_79129000_79131924_79132175_79133660_79133819_79135360_79135533_79136921_79137072_79137987_79138097_79138802_79139015_79141524_79141673_79142734
transcript_61568.nic	chr17	-	3957	24	ISM	ENSMUSG00000039414.11	ENSMUST00000232947.2	4345	27	-27	10752	-23	-6836	5prime_fragment	FALSE	canonical	3	55	junction_11	9.98619084343158	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGTCGGGTTAGTTCT	NA	False	NA	NA	False	NA	NA	NA	79142816	79102523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_79102776_79103250_79103491_79103812_79103958_79109041_79109212_79110800_79110991_79113375_79113536_79115758_79115950_79117936_79118043_79120523_79120700_79121500_79121665_79122918_79123029_79123660_79123761_79124901_79125055_79126234_79126347_79128049_79128301_79128843_79129000_79131924_79132175_79133660_79133819_79135360_79135533_79136921_79137072_79137987_79138097_79138802_79139015_79141524_79141673_79142734
transcript_61571.known	chr17	-	3680	16	FSM	ENSMUSG00000039414.11	ENSMUST00000232917.2	3680	16	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	10.4400936564552	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAGAAAAAAATTCTA	NA	False	NA	NA	False	AATAAA	-2	NA	79142793	79119323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_79120700_79121500_79121665_79122918_79123029_79123660_79123761_79124901_79125055_79126234_79126347_79128049_79128301_79128843_79129000_79131924_79132175_79133660_79133819_79135360_79135533_79136921_79137072_79137987_79138097_79138802_79139015_79141524_79141673_79142734
transcript_61572.known	chr17	+	4134	10	FSM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_6	15.3405779986718	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGTGTATGTGTGTGT	8852	False	NA	NA	False	TTTAAA	-7	NA	79143017	79155737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
transcript_61577.nic	chr17	+	886	8	ISM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	-62	6142	-40	2963	5prime_fragment	FALSE	canonical	3	101	junction_6	14.3697528134052	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGGAAGAGGAAGAGGAAAA	8790	False	NA	NA	False	NA	NA	NA	79142955	79149595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541
transcript_61579.nic	chr17	+	695	6	ISM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	-62	7271	-40	1834	5prime_fragment	FALSE	canonical	3	128	junction_5	8.56504524214554	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTCACATGAAAAACCAAAAT	8790	False	NA	NA	False	ATTAAA	-42	NA	79142955	79148466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391
transcript_61580.nic	chr17	+	454	4	ISM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	-62	9219	-40	-114	5prime_fragment	FALSE	canonical	3	130	junction_2	7.93025150224688	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAAAGAAGAAGAGCGGGA	8790	False	NA	NA	False	AAGAAA	-39	NA	79142955	79146518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415
transcript_61587.known	chr17	-	704	4	FSM	ENSMUSG00000024079.5	ENSMUST00000171852.2	704	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9.80929264637478	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTCCTCTTTCCATCT	NA	False	NA	NA	False	AGTAAA	-26	NA	79189977	79181206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_79181509_79183610_79183732_79185570_79185703_79189828
transcript_61593.known	chr17	-	764	5	FSM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	54.3570372628973	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202464
transcript_61594.nnic	chr17	-	3032	4	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	-67	0	intron_retention	FALSE	canonical	3	19	junction_3	86.5678924313166	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202596	79192325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79200136
transcript_61595.nic	chr17	-	1291	4	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	-161	0	-161	0	intron_retention	FALSE	canonical	3	141	junction_3	32.273139846559	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202690	79192325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971
transcript_616.known	chr1	-	716	1	FSM	ENSMUSG00000041859.11	ENSMUST00000188112.2	716	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCTTTGTGCTTTAA	NA	False	NA	-12	True	AGTAAA	-24	NA	20873945	20873229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_20873200_20873900
transcript_61600.known	chr17	-	4070	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAGTGTCTATTAGCAT	NA	False	NA	-3	True	ATTAAA	-40	NA	79244495	79226434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
transcript_61602.known	chr17	-	2920	16	FSM	ENSMUSG00000024081.10	ENSMUST00000233484.2	2920	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	165.681810173061	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTAGTTTTTGCTAGTCA	NA	False	NA	-6	True	AATAAA	-16	NA	79244470	79227273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242289_79243497_79244303
transcript_61609.nic	chr17	-	2946	13	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	-28	2628	-28	545	5prime_fragment	FALSE	canonical	3	465	junction_10	53.7154927992536	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAAATACATGCGCTCT	NA	False	NA	22	True	NA	NA	NA	79244523	79229062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
transcript_61610.nic	chr17	-	2686	12	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	-28	3296	-28	-123	5prime_fragment	FALSE	canonical	3	465	junction_9	55.1182050589968	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAAGGAGCTAAGGCTGA	NA	False	NA	NA	False	NA	NA	NA	79244523	79229730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
transcript_61611.nic	chr17	-	2673	11	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	-28	3508	-28	-335	5prime_fragment	FALSE	canonical	3	465	junction_8	56.471231613982	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAACGCAGCCTTGTCTT	NA	False	NA	0	True	NA	NA	NA	79244523	79229942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
transcript_61612.nic	chr17	-	2573	10	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	-28	4272	-28	852	5prime_fragment	FALSE	canonical	3	465	junction_7	57.3875712444196	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATAGAAGATATTGATGAT	NA	False	NA	NA	False	AAGAAA	-1	NA	79244523	79230706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
transcript_61616.known	chr17	+	602	5	FSM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_1	395.694563394546	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223928	79227735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_79223955_79225785_79225902_79226484_79226530_79227187_79227273_79227405
transcript_61617.known	chr17	+	753	5	FSM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	562.646592009585	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223945	79227735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
transcript_61621.nic	chr17	-	448	2	ISM	ENSMUSG00000024081.10	ENSMUST00000232899.2	530	3	-57	623	-28	-623	5prime_fragment	FALSE	canonical	3	619	junction_1	0	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAACAGAAGGAAAAAAGAC	NA	False	NA	NA	False	AATAAA	-10	NA	79244523	79243268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_79243497_79244303
transcript_61622.nic	chr17	-	390	2	ISM	ENSMUSG00000024081.10	ENSMUST00000232899.2	530	3	-57	681	-28	-681	5prime_fragment	FALSE	canonical	3	619	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAACACCAGCAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	79244523	79243326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_79243497_79244303
transcript_61626.known	chr17	+	1749	10	FSM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_6	40.441391826191	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGTCTCCTTATCAA	NA	False	NA	NA	False	AGTAAA	-12	NA	79244564	79254928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
transcript_6163.known	chr1	-	3022	10	FSM	ENSMUSG00000038473.15	ENSMUST00000160456.8	3022	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.22726233524303	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGTAAGCTGATAGCTG	NA	False	NA	NA	False	NA	NA	NA	170417430	170145027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170146460_170147990_170148157_170155086_170155267_170156709_170156877_170165681_170165824_170176963_170177073_170202816_170202876_170218299_170218393_170342183_170342256_170416828
transcript_61638.known	chr17	+	514	2	FSM	ENSMUSG00000024082.6	ENSMUST00000233138.2	514	2	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACCCTCCTGAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	79244587	79245390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_79244631_79244919
transcript_61641.known	chr17	-	4743	19	FSM	ENSMUSG00000024070.16	ENSMUST00000119284.8	4743	19	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_5	36.6411106225551	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACAAAAACAAAACAGG	NA	False	NA	NA	False	NA	NA	NA	79328245	79257977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_79259460_79260105_79260192_79261902_79262171_79263950_79264050_79264570_79264733_79266460_79266568_79268539_79268613_79269955_79270009_79273603_79273881_79275468_79275547_79278788_79278913_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
transcript_61646.nic	chr17	-	3823	9	NIC	ENSMUSG00000024070.16	novel	5884	19	NA	NA	-208	-541	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	42.4941172399192	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTGTTTAATATATTTA	NA	False	NA	0	True	NA	NA	NA	79328453	79277588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_79279270_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
transcript_61648.nic	chr17	-	2274	9	NIC	ENSMUSG00000024070.16	novel	1265	7	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	42.4941172399192	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTGAGGTGTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	79328299	79278983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_79279270_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
transcript_6165.known	chr1	+	3095	8	FSM	ENSMUSG00000038463.9	ENSMUST00000046792.9	3095	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.494871659305394	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGCTCATTTTCGTTTC	NA	False	NA	NA	False	AATAAA	-21	NA	170472100	170510358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_170472665_170475250_170475515_170477304_170477413_170489927_170490105_170494140_170494367_170496319_170496833_170508605_170508783_170509292
transcript_61650.known	chr17	-	3508	2	FSM	ENSMUSG00000024070.16	ENSMUST00000130070.2	3508	2	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGTTGGTTTGTCAGTT	NA	False	NA	NA	False	TTTAAA	-36	NA	79328206	79317555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_79320971_79328113
transcript_61651.known	chr17	+	2059	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_1	6.47216261298253	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAATAACTATTGCCTC	NA	False	NA	-2	True	AATATA	-14	NA	79359334	79397807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
transcript_61659.known	chr17	+	1473	6	FSM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	82.0351144327842	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAATTTATTTTCATGT	NA	False	NA	11	True	ATTAAA	-20	NA	79359616	79397650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_79359818_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
transcript_6166.known	chr1	-	7246	16	FSM	ENSMUSG00000026663.7	ENSMUST00000027974.7	7246	16	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	11.1705963234835	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGTCTGTACAAAGACA	NA	False	NA	2	True	AATAAA	-18	NA	170695340	170532242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170537657_170574674_170574760_170614914_170615030_170616176_170616245_170621525_170621626_170622225_170622340_170627182_170627315_170642991_170643084_170646815_170647002_170662388_170662610_170668249_170668454_170669254_170669382_170676685_170676787_170680473_170680562_170682681_170682759_170695218
transcript_61665.known	chr17	-	2265	2	FSM	ENSMUSG00000036533.10	ENSMUST00000068958.9	2265	2	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAACGTGTTCATTTA	NA	False	NA	NA	False	AATAAA	-12	NA	79662520	79641155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_79643146_79662245
transcript_61669.known	chr17	+	2118	11	FSM	ENSMUSG00000036368.9	ENSMUST00000225357.2	2118	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.75862284482674	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTGCAATCCTCTGGT	3580	False	NA	NA	False	GATAAA	-31	NA	79922490	79989678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_79922798_79928734_79929202_79957730_79957906_79959127_79959231_79966841_79966903_79974299_79974376_79975379_79975458_79977985_79978085_79979778_79979833_79979921_79980003_79989061
transcript_61670.known	chr17	-	3618	13	FSM	ENSMUSG00000059811.14	ENSMUST00000068282.7	3618	13	0	0	0	0	multi-exon	TRUE	canonical	3	301	junction_5	41.6619997386374	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTGTTCTGAAATTAAA	3751	False	NA	-2	True	AATAAA	-18	NA	80203552	80155818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
transcript_61671.nnic	chr17	-	3470	13	NIC	ENSMUSG00000059811.14	novel	3618	13	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	105.266988599888	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAAGTTGTGATTCTTTTT	3741	False	NA	NA	False	ATTAAA	-21	NA	80203562	80156491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_80158223_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
transcript_61672.known	chr17	-	3371	12	FSM	ENSMUSG00000059811.14	ENSMUST00000112437.8	3371	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	103.456941975757	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAAGTGTTCTGAAATTA	3751	False	NA	-4	True	AATAAA	-16	NA	80203552	80155820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80203337
transcript_61680.known	chr17	-	2849	2	FSM	ENSMUSG00000059811.14	ENSMUST00000222243.2	2849	2	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAATACTTAGAATTCT	3763	False	NA	NA	False	ATTAAA	-23	NA	80203540	80180829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80183476_80203337
transcript_61682.known	chr17	-	2742	14	FSM	ENSMUSG00000024095.16	ENSMUST00000184297.8	2742	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	238.271661377061	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTGTTCATCTTCATT	3570	False	NA	NA	False	TATAAA	-15	NA	80369656	80337265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80352368_80352452_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
transcript_61686.known	chr17	-	3116	13	FSM	ENSMUSG00000024095.16	ENSMUST00000061331.14	3116	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	159.429974178843	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTAAGGCTGTTGTTC	3463	False	NA	-4	True	NA	NA	NA	80369763	80336915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356290_80357234_80357322_80358056_80358295_80360951_80361071_80369085
transcript_61687.known	chr17	-	3009	13	FSM	ENSMUSG00000024095.16	ENSMUST00000184635.8	3009	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	159.429974178843	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTAAGGCTGTTGTTC	3570	False	NA	-4	True	NA	NA	NA	80369656	80336915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
transcript_6169.known	chr1	-	1374	6	FSM	ENSMUSG00000026659.14	ENSMUST00000027970.14	1374	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	62.7917191992702	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170713109	170701756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
transcript_617.known	chr1	-	3031	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	3941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	-12	True	AATACA	-9	NA	20890536	20873191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
transcript_6170.known	chr1	-	911	6	FSM	ENSMUSG00000026659.14	ENSMUST00000166393.2	911	6	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	89.0002247188174	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGTGCTCCTGTGGTCG	NA	False	NA	NA	False	NA	NA	NA	170712965	170702088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708611_170712635
transcript_61706.known	chr17	-	4651	6	FSM	ENSMUSG00000024095.16	ENSMUST00000184889.2	4651	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	229.055975691533	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGATTGTGAAACCGTGTA	3662	False	NA	NA	False	TATAAA	-14	NA	80369564	80352477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
transcript_6171.known	chr1	-	846	5	FSM	ENSMUSG00000026659.14	ENSMUST00000171447.8	846	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	122.748727080976	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170712768	170701756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170702140_170707698_170707796_170708141_170708261_170708483_170708598_170712635
transcript_61710.known	chr17	-	3019	2	FSM	ENSMUSG00000024095.16	ENSMUST00000184726.2	3019	2	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTAGTTACTGCTGTG	3529	False	NA	NA	False	AATAAA	-18	NA	80369697	80358663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80361071_80369085
transcript_61712.known	chr17	+	2314	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGACTCTTGTTCTTTTG	NA	False	NA	11	True	AATAAA	-19	NA	80434899	80492530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
transcript_61713.known	chr17	-	1991	9	FSM	ENSMUSG00000024097.12	ENSMUST00000234503.2	1991	9	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	890.532565378718	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGCATGTTTGAGGA	NA	False	NA	NA	False	NA	NA	NA	80514736	80508258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512050_80512511_80512690_80512868_80513276_80513458_80514603
transcript_61723.known	chr17	-	2288	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_61725.known	chr17	-	1040	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGATGTTTTGATTTTT	NA	False	NA	-14	True	AATAAA	-9	NA	80514732	80508745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_61727.nic	chr17	-	2255	8	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	678.209978922608	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_61730.known	chr17	-	2403	8	FSM	ENSMUSG00000024097.12	ENSMUST00000234095.2	2403	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	780.885394920407	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTAAGTTTGTTCAAT	NA	False	NA	-56	True	NA	NA	NA	80514286	80507553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80513995
transcript_61740.nic	chr17	-	1041	8	NIC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	678.209978922608	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGATTTTTGTGTT	NA	False	NA	-9	True	AATAAA	-14	NA	80514752	80508740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_61745.known	chr17	-	1921	7	FSM	ENSMUSG00000024097.12	ENSMUST00000235036.2	1921	7	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	429.146601472685	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGATTTTTGTGTT	NA	False	NA	-9	True	AATAAA	-14	NA	80514734	80508740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512868_80513276_80513458_80514603
transcript_61748.known	chr17	-	987	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234696.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	923.958693160396	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514732	80508738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80509032_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_61750.nic	chr17	-	1013	7	NIC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	135	junction_1	782.029553292088	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_80509032_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_61757.known	chr17	-	1898	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234889.2	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	729.529623951092	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514733	80508738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80512868_80513276_80513458_80514603
transcript_61767.nic	chr17	-	1228	3	ISM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	-2	3206	0	-496	5prime_fragment	FALSE	canonical	3	2057	junction_1	159	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATAGGCCCAGAGTTTT	NA	False	NA	NA	False	AGTAAA	-10	NA	80514734	80511951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_80512868_80513276_80513458_80514603
transcript_61768.known	chr17	+	1134	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	34	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATATTTCTATTCTTAA	NA	False	NA	39	True	ATTAAA	-30	NA	80531869	80535926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_80532100_80533049_80533194_80535166
transcript_61776.known	chr17	-	4737	24	FSM	ENSMUSG00000035051.16	ENSMUST00000086555.11	4737	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_22	13.7365159867987	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGGTGTGGAGTAGACG	878	False	NA	-7	True	AATAAA	-13	NA	80597572	80545739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80546360_80549380_80549582_80553103_80553239_80554537_80554613_80555699_80555835_80557281_80557366_80557448_80557545_80558660_80558938_80560515_80560717_80561693_80561868_80562980_80563078_80565502_80565620_80567650_80567860_80571376_80571432_80572504_80572639_80574943_80575069_80576180_80576377_80577795_80577918_80580360_80580540_80582192_80583032_80583278_80583465_80585651_80585811_80588624_80588858_80597484
transcript_61779.known	chr17	-	4913	23	FSM	ENSMUSG00000035051.16	ENSMUST00000038166.9	4913	23	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_21	20.6034980581309	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTGTGGAGTAGACGTG	545	False	NA	-5	True	AATAAA	-15	NA	80597905	80545737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80546360_80549380_80549582_80553103_80553239_80554537_80554613_80555699_80555835_80557281_80557366_80557448_80557545_80558660_80558938_80560515_80560717_80561693_80561868_80562980_80563078_80565502_80565620_80567650_80567860_80571376_80571432_80572504_80572639_80574943_80575069_80576180_80576377_80577795_80577918_80580360_80580540_80582192_80583032_80583278_80583465_80588624_80588858_80597484
transcript_61782.nic	chr17	-	3685	20	ISM	ENSMUSG00000035051.16	ENSMUST00000086555.11	4737	24	-32	10013	-32	4241	5prime_fragment	FALSE	canonical	3	55	junction_18	11.0210073894411	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAAAACGAGCCCAGGGA	846	False	NA	NA	False	AAGAAA	-1	NA	80597604	80555752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_80555835_80557281_80557366_80557448_80557545_80558660_80558938_80560515_80560717_80561693_80561868_80562980_80563078_80565502_80565620_80567650_80567860_80571376_80571432_80572504_80572639_80574943_80575069_80576180_80576377_80577795_80577918_80580360_80580540_80582192_80583032_80583278_80583465_80585651_80585811_80588624_80588858_80597484
transcript_61788.known	chr17	+	644	5	FSM	ENSMUSG00000045257.11	ENSMUST00000061703.10	644	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	10.1242283656583	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTTTTGAATTATGTA	NA	False	NA	12	True	AATAAA	-15	NA	80597640	80604902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682
transcript_6179.known	chr1	-	1462	7	FSM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	22.7943706500823	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170803696	170788126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469
transcript_61795.known	chr17	-	1991	10	FSM	ENSMUSG00000033966.9	ENSMUST00000234349.2	1991	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	2.31474073955552	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGAAAATCAAAAGACAAGC	NA	False	NA	NA	False	NA	NA	NA	80884913	80831961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80832816_80841226_80841362_80842822_80842880_80846932_80847016_80851048_80851247_80855120_80855212_80858254_80858328_80863735_80863858_80867778_80868004_80884760
transcript_61797.known	chr17	-	2931	10	FSM	ENSMUSG00000033966.9	ENSMUST00000086545.5	2931	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	2.81968389787767	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTATTCAAATCAATGAT	NA	False	NA	NA	False	AATAAA	-26	NA	80871263	80830978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80832816_80841226_80841362_80842822_80842880_80846932_80847016_80851048_80851247_80855120_80855212_80858254_80858328_80863735_80863858_80867778_80868004_80871153
transcript_618.known	chr1	-	3431	16	FSM	ENSMUSG00000041859.11	ENSMUST00000185296.2	3431	16	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_10	187.277975213318	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATTTGTCTGTGTGTAT	NA	False	NA	-17	True	AATACA	-4	NA	20890484	20873196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
transcript_6180.nnic	chr1	-	1621	7	NNC	ENSMUSG00000059498.14	novel	1347	5	NA	NA	-1310	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	70.3980744686166	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATCAACGGTGGGC	NA	False	NA	-28	True	AATAAA	-3	NA	170888282	170878763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_170879422_170881507_170881763_170885259_170885518_170886154_170886176_170886837_170886964_170887195_170887296_170888079
transcript_61802.known	chr17	-	4220	34	FSM	ENSMUSG00000024242.16	ENSMUST00000025089.9	4220	34	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_19	37.8671982269756	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTGCGTAGTTGCTGG	NA	False	NA	-4	True	AATAAA	-15	NA	81035522	80887945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80936714_80936778_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
transcript_61804.known	chr17	-	4088	33	FSM	ENSMUSG00000024242.16	ENSMUST00000234133.2	4088	33	0	0	0	0	multi-exon	TRUE	canonical	3	111	junction_19	35.3232837516559	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTGCGTAGTTGCTGG	NA	False	NA	-4	True	AATAAA	-15	NA	81035453	80887945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
transcript_61817.known	chr17	-	2239	11	FSM	ENSMUSG00000024246.10	ENSMUST00000234801.2	2239	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	48.9983673197383	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGCTTATAGACTC	8149	False	NA	NA	False	ATTAAA	-22	NA	81372511	81333760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_81334400_81338052_81338444_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
transcript_61818.nnic	chr17	-	1976	11	NNC	ENSMUSG00000024246.10	novel	2239	11	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	45.4774669479293	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGCTTATAGACTC	8135	False	NA	NA	False	ATTAAA	-22	NA	81372525	81333760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81347860_81347975_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
transcript_61819.nnic	chr17	-	1984	11	NNC	ENSMUSG00000024246.10	novel	2239	11	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	47.3007399519289	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGCTTATAGACTC	8137	False	NA	NA	False	ATTAAA	-22	NA	81372523	81333760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81371345_81371470_81372363
transcript_61821.known	chr17	-	1833	10	FSM	ENSMUSG00000024246.10	ENSMUST00000025093.6	1833	10	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	16.3940669785982	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGCTTATAGACTC	8164	False	NA	NA	False	ATTAAA	-22	NA	81372496	81333760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
transcript_61824.known	chr17	-	885	1	FSM	ENSMUSG00000117438.2	ENSMUST00000234808.2	885	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTGCTGTGCAGACGCC	NA	False	NA	NA	False	NA	NA	NA	82718248	82717363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_82717400_82718200
transcript_61829.known	chr17	+	5441	24	FSM	ENSMUSG00000032624.17	ENSMUST00000096766.12	5441	24	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_6	101.418055237548	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTTTCCTTTGCCTTT	NA	False	NA	12	True	GATAAA	-15	NA	83658359	83787786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83732686_83732861_83734651_83734781_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
transcript_6183.known	chr1	-	1298	3	FSM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	7.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCTCCTTTTGGTGAC	NA	False	NA	-7	True	AATAAA	-24	NA	170885623	170878742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170879422_170881507_170881763_170885259
transcript_61834.known	chr17	+	2934	23	FSM	ENSMUSG00000032624.17	ENSMUST00000234584.2	2934	23	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_4	84.4550347377939	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGCTGCAGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	83658643	83785596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83732686_83732861_83734651_83734781_83735428_83735455_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
transcript_61839.nic	chr17	+	4767	23	NIC	ENSMUSG00000032624.17	novel	5441	24	NA	NA	-74	-481	combination_of_known_junctions	FALSE	canonical	3	110	junction_3	107.479269575252	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCACCTCAACATAGGTC	NA	False	NA	NA	False	AATAAA	-10	NA	83658285	83787212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_83658669_83717454_83717638_83729034_83729165_83734651_83734781_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
transcript_61840.nic	chr17	+	5345	23	NIC	ENSMUSG00000032624.17	novel	5286	24	NA	NA	-74	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_3	107.479269575252	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTCCTTTGCCTTTGTTT	NA	False	NA	16	True	GATAAA	-19	NA	83658285	83787790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_83658669_83717454_83717638_83729034_83729165_83734651_83734781_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
transcript_61846.known	chr17	+	5081	22	FSM	ENSMUSG00000032624.17	ENSMUST00000112363.10	5081	22	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	90.7300948604083	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCCAAGTGTTTCACGT	NA	False	NA	66	True	AATGAA	-3	NA	83658419	83787693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83734651_83734781_83735428_83735455_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
transcript_61848.nic	chr17	+	4638	22	NIC	ENSMUSG00000032624.17	novel	5441	24	NA	NA	-74	-481	combination_of_known_junctions	FALSE	canonical	3	67	junction_3	112.735940543597	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCACCTCAACATAGGTC	NA	False	NA	NA	False	AATAAA	-10	NA	83658285	83787212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_83658669_83717454_83717638_83729034_83729165_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
transcript_61849.nic	chr17	+	5216	22	NIC	ENSMUSG00000032624.17	novel	5286	24	NA	NA	-74	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_3	112.735940543597	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTCCTTTGCCTTTGTTT	NA	False	NA	16	True	GATAAA	-19	NA	83658285	83787790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_83658669_83717454_83717638_83729034_83729165_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
transcript_61851.known	chr17	+	5052	21	FSM	ENSMUSG00000032624.17	ENSMUST00000049503.10	5052	21	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	95.8126296476618	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAATGTTTCCTTTGCCT	NA	False	NA	10	True	GATAAA	-13	NA	83658410	83787784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_83658669_83717454_83717638_83729034_83729165_83735428_83735455_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
transcript_61878.nic	chr17	+	634	3	ISM	ENSMUSG00000032624.17	ENSMUST00000234584.2	2934	23	-358	56494	-74	-56494	5prime_fragment	FALSE	canonical	3	373	junction_1	49.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAATCATACCAGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	83658285	83729102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_83658669_83717454_83717638_83729034
transcript_61879.nic	chr17	+	636	3	ISM	ENSMUSG00000032624.17	ENSMUST00000234584.2	2934	23	-298	56432	-14	-56432	5prime_fragment	FALSE	canonical	3	373	junction_1	49.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCTGATAGTAATGGGGT	NA	False	NA	NA	False	AAGAAA	-28	NA	83658345	83729164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_83658669_83717454_83717638_83729034
transcript_6188.nic	chr1	-	1251	6	NIC	ENSMUSG00000058076.13	novel	3171	6	NA	NA	0	243	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	366.673369635702	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGACTCTTTGGAATCT	456	False	NA	-6	True	ATTAAA	-16	NA	170978172	170956732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978048
transcript_61881.known	chr17	-	1129	4	FSM	ENSMUSG00000024248.15	ENSMUST00000167741.9	1129	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	605.058858477605	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGATGTTTTTAGTTT	9947	False	NA	-39	True	AATAAA	-7	NA	83821759	83809362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_83810167_83811359_83811429_83811528_83811658_83821632
transcript_61884.known	chr17	-	1076	3	FSM	ENSMUSG00000024248.15	ENSMUST00000025095.9	1076	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	644	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGTTTTTTGTTTT	9947	False	NA	-23	True	AATAAA	-23	NA	83821759	83809346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_83810167_83811528_83811658_83821632
transcript_6189.known	chr1	-	3171	6	FSM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	0	0	0	0	multi-exon	TRUE	canonical	3	578	junction_5	147.434866975217	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGTGACCATACTTGTGA	456	False	NA	NA	False	AATAAA	-16	NA	170978172	170954733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978127
transcript_61891.known	chr17	+	1723	14	FSM	ENSMUSG00000055817.19	ENSMUST00000112350.8	1723	14	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_11	147.297388673592	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGCCTTTGTTTTTTTTT	NA	False	NA	10	True	AATAAA	-15	NA	84013591	84100302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
transcript_61896.nic	chr17	+	1861	12	NIC	ENSMUSG00000055817.19	novel	882	8	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	326.775531418563	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGCCTTTGTTTTTTTTT	NA	False	NA	10	True	AATAAA	-15	NA	84036533	84100302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_84036957_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
transcript_619.known	chr1	-	1120	4	FSM	ENSMUSG00000097934.2	ENSMUST00000181654.2	1120	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACTGTCTTAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	20960697	20958873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_20959364_20959699_20959880_20960069_20960154_20960331
transcript_61904.known	chr17	+	2087	17	FSM	ENSMUSG00000055817.19	ENSMUST00000067826.15	2087	17	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_6	449.066236066574	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTGTTTATTTTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	84013619	84122334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070342_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478_84107566_84111879_84112027_84122064
transcript_61909.known	chr17	-	7784	38	FSM	ENSMUSG00000024251.11	ENSMUST00000047524.10	7784	38	0	0	0	0	multi-exon	TRUE	canonical	2	39	junction_31	15.529655412283	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACCATCTCACATTGGC	NA	False	NA	-39	True	AATAAA	-17	NA	84773544	84497503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759325_84762036_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771930_84773521
transcript_6191.known	chr1	-	815	5	FSM	ENSMUSG00000058076.13	ENSMUST00000081560.5	815	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	383.770113479411	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGGTGGAGGAGGAGG	468	False	NA	NA	False	NA	NA	NA	170978160	170956975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170973324_170973382_170978127
transcript_61920.nnic	chr17	-	2674	13	NNC	ENSMUSG00000024251.11	novel	2556	13	NA	NA	13686	69	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	23.3789732214417	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGGGTATGTTTGATT	NA	False	NA	-48	True	TATAAA	-16	NA	84662522	84498895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84662339
transcript_61924.known	chr17	-	3530	2	FSM	ENSMUSG00000045817.9	ENSMUST00000060366.7	3530	2	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTCTTTGAGTAAT	NA	False	NA	NA	False	AATAAA	-10	NA	84495375	84491358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_84494585_84495071
transcript_61929.known	chr17	+	1354	13	FSM	ENSMUSG00000024253.10	ENSMUST00000025101.10	1354	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	7.6412622575651	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCTAAGTATAAATTTT	NA	False	NA	16	True	AATAAA	-24	NA	84933923	84963016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84950299_84950487_84951532_84951602_84952146_84952225_84954672_84954750_84955073_84955145_84956643_84956742_84957136_84957230_84962728
transcript_61931.known	chr17	-	4393	38	FSM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_25	55.1799102769645	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATGTATTTTTTTAT	NA	False	NA	-6	True	AATAAA	-16	NA	85097986	85012674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_85012901_85013326_85013470_85014521_85014607_85015515_85015591_85017718_85017835_85017962_85018103_85020120_85020323_85024054_85024144_85030124_85030252_85033730_85033840_85033957_85034101_85038572_85038664_85039176_85039246_85047497_85047605_85047971_85048097_85056388_85056597_85057935_85058022_85058651_85058783_85059736_85059851_85060156_85060202_85060541_85060620_85060832_85060940_85061968_85062027_85063685_85063714_85069379_85069447_85071879_85071974_85074420_85074540_85077022_85077131_85077427_85077534_85077781_85077928_85078270_85078416_85078851_85078979_85079520_85079608_85080471_85080531_85080635_85080758_85082816_85082940_85084368_85084563_85097792
transcript_6194.known	chr1	-	1577	3	FSM	ENSMUSG00000038370.7	ENSMUST00000111332.2	1577	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGGTTTGTGTGGGTAC	NA	False	NA	1	True	AATAAA	-33	NA	171023837	171000830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171002095_171003138_171003194_171023579
transcript_61942.nic	chr17	-	3000	28	ISM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	-17	21381	-13	4552	5prime_fragment	FALSE	canonical	3	476	junction_15	44.1357178623034	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAAGAAGAGAACATTATC	NA	False	NA	NA	False	NA	NA	NA	85098003	85034055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_85034101_85038572_85038664_85039176_85039246_85047497_85047605_85047971_85048097_85056388_85056597_85057935_85058022_85058651_85058783_85059736_85059851_85060156_85060202_85060541_85060620_85060832_85060940_85061968_85062027_85063685_85063714_85069379_85069447_85071879_85071974_85074420_85074540_85077022_85077131_85077427_85077534_85077781_85077928_85078270_85078416_85078851_85078979_85079520_85079608_85080471_85080531_85080635_85080758_85082816_85082940_85084368_85084563_85097792
transcript_61944.nic	chr17	-	2636	24	ISM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	-41	35373	-37	8161	5prime_fragment	FALSE	canonical	3	476	junction_11	41.7225510550427	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAGTGTTACCCAGGAT	NA	False	NA	NA	False	CATAAA	-4	NA	85098027	85048047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_85048097_85056388_85056597_85057935_85058022_85058651_85058783_85059736_85059851_85060156_85060202_85060541_85060620_85060832_85060940_85061968_85062027_85063685_85063714_85069379_85069447_85071879_85071974_85074420_85074540_85077022_85077131_85077427_85077534_85077781_85077928_85078270_85078416_85078851_85078979_85079520_85079608_85080471_85080531_85080635_85080758_85082816_85082940_85084368_85084563_85097792
transcript_61945.nic	chr17	-	2368	23	ISM	ENSMUSG00000024120.13	ENSMUST00000112308.9	4393	38	-11	43903	-7	-369	5prime_fragment	FALSE	canonical	3	476	junction_10	41.8274940224531	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGATGAAAGAGAAGGATG	NA	False	NA	NA	False	NA	NA	NA	85097997	85056577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_85056597_85057935_85058022_85058651_85058783_85059736_85059851_85060156_85060202_85060541_85060620_85060832_85060940_85061968_85062027_85063685_85063714_85069379_85069447_85071879_85071974_85074420_85074540_85077022_85077131_85077427_85077534_85077781_85077928_85078270_85078416_85078851_85078979_85079520_85079608_85080471_85080531_85080635_85080758_85082816_85082940_85084368_85084563_85097792
transcript_61959.known	chr17	+	2670	6	FSM	ENSMUSG00000061130.14	ENSMUST00000080217.14	2670	6	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_5	336.634519917373	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCACACTTTGGCTCAG	NA	False	NA	6	True	AATAAA	-22	NA	85265426	85322119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85320993
transcript_61961.known	chr17	+	3323	6	FSM	ENSMUSG00000061130.14	ENSMUST00000112304.10	3323	6	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	340.544857544494	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTGGCATACTTGTGGA	NA	False	NA	19	True	AATAAA	-31	NA	85265436	85324625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85322836
transcript_61962.known	chr17	+	1290	6	FSM	ENSMUSG00000061130.14	ENSMUST00000234332.2	1290	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	598.858046618729	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAACTTGAAAGAAAAAAAA	NA	False	NA	17	True	NA	NA	NA	85265803	85331246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85331123
transcript_61969.known	chr17	-	2734	15	FSM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	21.6455679584736	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTTGTGTAATTTTG	NA	False	NA	-3	True	TTTAAA	-4	NA	85397652	85371957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
transcript_61971.nnic	chr17	-	3278	15	NNC	ENSMUSG00000024127.16	novel	2734	15	NA	NA	-666	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_14	51.2963080980473	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTTGTGTAATTTTG	NA	False	NA	-3	True	TTTAAA	-4	NA	85398335	85371957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397672
transcript_61974.known	chr17	-	3255	14	FSM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_13	48.4489605166915	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAATTTTCTTCGTGTCT	NA	False	NA	-18	True	TATAAA	-38	NA	85397649	85370897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
transcript_61978.known	chr17	-	1625	6	FSM	ENSMUSG00000024127.16	ENSMUST00000234036.2	1625	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	17.1043854025802	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTTAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-38	NA	85397659	85385486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
transcript_61979.known	chr17	+	1595	11	FSM	ENSMUSG00000071037.7	ENSMUST00000095188.7	1595	11	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_6	13.9484766193302	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTGTTTCAATCTATC	2173	False	NA	10	True	AATAAA	-26	NA	85397979	85766016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_85398292_85403917_85404091_85421210_85421276_85699000_85699062_85700885_85700941_85702029_85702094_85709853_85709921_85738898_85738974_85746954_85747019_85759623_85759756_85765489
transcript_6198.known	chr1	-	4712	10	FSM	ENSMUSG00000005674.10	ENSMUST00000005817.9	4712	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_9	16.1314048434171	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAGGCTAGATGTCAGT	9509	False	NA	NA	False	CATAAA	-16	NA	171050083	171043579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049723_171049943
transcript_61982.nnic	chr17	+	2779	4	NNC	ENSMUSG00000071037.7	novel	741	4	NA	NA	-18	-37778	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_3	37.6769897358528	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAGTTCATCAAAATATA	2209	False	NA	NA	False	NA	NA	NA	85398015	85436158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_85398292_85403917_85404091_85421210_85421276_85433893
transcript_61984.known	chr17	+	376	1	FSM	ENSMUSG00000097803.2	ENSMUST00000181130.2	376	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCATGTCAAATAACG	NA	False	NA	NA	False	NA	NA	NA	85806060	85806436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_85806100_85806400
transcript_61987.known	chr17	-	3530	21	FSM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	11.0027269347194	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTGTGCTGTTCATTG	NA	False	NA	-1	True	AATAAA	-15	NA	86452603	86292092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
transcript_61991.nic	chr17	-	430	4	ISM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	-15	151772	-15	-78763	5prime_fragment	FALSE	canonical	3	93	junction_3	4.64279609239471	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTTCCGAGGGCCAAAAA	NA	False	NA	NA	False	AAAAAG	-10	NA	86452618	86443864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_-_86443964_86446496_86446678_86449787_86449868_86452548
transcript_61993.known	chr17	+	5516	16	FSM	ENSMUSG00000024140.11	ENSMUST00000024954.11	5516	16	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	13.5078577954545	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGCTCGTGCCTCTTGTT	NA	False	NA	10	True	ATTAAA	-15	NA	87061127	87140838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87061737_87104543_87104735_87112620_87112773_87113184_87113270_87116785_87116905_87117011_87117218_87125782_87125890_87131107_87131256_87131834_87132050_87133007_87133199_87133932_87134044_87134919_87135426_87136117_87136245_87136413_87136529_87136737_87136912_87138378
transcript_61997.nic	chr17	+	2463	2	ISM	ENSMUSG00000024140.11	ENSMUST00000024954.11	5516	16	-36	34477	-36	-26689	5prime_fragment	FALSE	canonical	3	77	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGTAGATAAGGGGCA	NA	False	NA	NA	False	NA	NA	NA	87061091	87106361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_87061737_87104543
transcript_62.known	SIRV1	-	1363	6	FSM	SIRV1A	SIRV103	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	1000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
transcript_620.known	chr1	+	5330	3	FSM	ENSMUSG00000025931.16	ENSMUST00000189400.7	5330	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTACATTATTTTG	9100	False	NA	NA	False	ATTAAA	-21	NA	20960829	21009874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_20960911_21002283_21002464_21004805
transcript_6200.nic	chr1	-	1397	10	NIC	ENSMUSG00000005674.10	novel	4712	10	NA	NA	-8	-853	combination_of_known_junctions	FALSE	canonical	2	13	junction_9	36.8945778745768	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTTTTGTTATTTTTGT	9519	False	NA	-13	True	AGTAAA	-40	NA	171050073	171046784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049623_171049943
transcript_62000.known	chr17	-	988	6	FSM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	28.3760462362183	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTCAGATGCTGTT	NA	False	NA	-12	True	AATAAA	-15	NA	87332834	87304683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
transcript_62004.known	chr17	+	1184	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGTGTCTTCAATGAT	NA	False	NA	4	True	AATAAA	-14	NA	87332977	87343238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
transcript_62008.known	chr17	+	763	5	FSM	ENSMUSG00000024146.10	ENSMUST00000160269.2	763	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	278.799210902757	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAATGAGCAGCACCTTA	NA	False	NA	NA	False	NA	NA	NA	87333038	87342900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87333082_87335126_87335193_87338435_87338491_87341683_87341788_87342405
transcript_62010.known	chr17	+	978	2	FSM	ENSMUSG00000037104.10	ENSMUST00000234803.2	978	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAGAAAAATACATCT	NA	False	NA	NA	False	NA	NA	NA	87415118	87441670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87415476_87441049
transcript_62013.known	chr17	-	1396	4	FSM	ENSMUSG00000117384.2	ENSMUST00000234580.2	1396	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.35702260395516	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGAAGGTGGTCTGGAC	NA	False	NA	NA	False	NA	NA	NA	87502370	87499643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87499956_87500048_87500280_87500375_87500551_87501692
transcript_62020.known	chr17	-	603	5	FSM	ENSMUSG00000024150.13	ENSMUST00000151155.8	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	129.331695651143	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCTACATCGACTACGCT	NA	False	NA	NA	False	NA	NA	NA	87573323	87563397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573262
transcript_62023.known	chr17	-	2017	5	FSM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	147.031246679065	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573332	87562085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87571568_87571794_87573262
transcript_62025.known	chr17	-	2038	4	FSM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	69.8108555710038	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGGCTGGATTCTGG	NA	False	NA	NA	False	AATGAA	-18	NA	87573363	87561870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87573262
transcript_62026.nnic	chr17	-	1787	4	NNC	ENSMUSG00000024150.13	novel	2017	5	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	147.196769288218	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573375	87562085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_-_87563486_87564574_87564735_87565355_87565518_87573310
transcript_62029.known	chr17	+	4614	20	FSM	ENSMUSG00000036918.17	ENSMUST00000041110.12	4614	20	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_15	8.33807805830403	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAGTGTCCAGTTACTT	NA	False	NA	13	True	AATAAA	-28	NA	87590313	87689197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87590839_87597616_87597781_87600238_87600408_87614356_87614488_87616156_87616273_87628830_87628910_87629865_87630024_87630551_87630616_87636750_87636889_87637452_87637537_87641694_87641800_87647318_87647437_87648315_87648374_87649494_87649568_87653968_87654130_87666541_87666659_87669276_87669372_87670883_87671019_87677886_87678090_87687276
transcript_62034.nic	chr17	+	665	2	ISM	ENSMUSG00000036918.17	ENSMUST00000144204.8	2209	17	-129	71657	-64	-2665	5prime_fragment	FALSE	canonical	3	65	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATCCCTTTGCTGGAGA	NA	False	NA	NA	False	AATAAA	-4	NA	87590249	87597692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_87590839_87597616
transcript_62035.known	chr17	+	868	1	FSM	ENSMUSG00000036918.17	ENSMUST00000234468.2	868	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTAGACCGATGCGTTT	NA	False	NA	NA	False	AATAAA	-26	NA	87590375	87591243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87590400_87591200
transcript_62036.known	chr17	-	847	7	FSM	ENSMUSG00000036557.9	ENSMUST00000040609.9	847	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.763762615825973	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTGAGTTTTAACAAGTT	NA	False	NA	NA	False	AATAAA	-20	NA	87735169	87696998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87697141_87702588_87702694_87718656_87718712_87718955_87719021_87729941_87730200_87733070_87733131_87735007
transcript_62037.known	chr17	-	1205	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	0	0	0	0	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	1805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	-5	True	AATAAA	-21	NA	87754363	87740839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
transcript_62038.known	chr17	-	842	5	FSM	ENSMUSG00000036438.15	ENSMUST00000234406.2	842	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	3004.56365384393	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGTGGACTGTGGACAGT	NA	False	NA	-135	True	NA	NA	NA	87754284	87741092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87754220
transcript_62039.known	chr17	-	890	5	FSM	ENSMUSG00000036438.15	ENSMUST00000143965.8	890	5	0	0	0	0	multi-exon	FALSE	canonical	3	6557	junction_1	362.950668135492	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAGCTTTTAGGAACTG	NA	False	NA	NA	False	NA	NA	NA	87754276	87741147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743363_87750123_87750155_87754220
transcript_62040.known	chr17	-	657	5	FSM	ENSMUSG00000036438.15	ENSMUST00000150137.2	657	5	0	0	0	0	multi-exon	FALSE	canonical	3	7049	junction_1	180.22954114129	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGACTCTCAGGTCTACG	NA	False	NA	NA	False	TTTAAA	-37	NA	87754277	87742321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
transcript_62042.known	chr17	-	403	4	FSM	ENSMUSG00000036438.15	ENSMUST00000238271.2	403	4	0	0	0	0	multi-exon	FALSE	canonical	3	7253	junction_2	129.177741460706	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTCCGTGTGTTTGATA	NA	False	NA	NA	False	AAGAAA	-37	NA	87754363	87743053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_87743139_87743218_87743363_87750123_87750155_87754220
transcript_62045.known	chr17	+	1745	9	FSM	ENSMUSG00000045394.10	ENSMUST00000234623.2	1745	9	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_4	21.0535032714273	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACGTGGGTAAGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	87944109	87958557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87944323_87947323_87947432_87947715_87947957_87948861_87948928_87949529_87949594_87950969_87951072_87953564_87953769_87957041_87957087_87957855
transcript_62056.known	chr17	+	3283	16	FSM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_8	132.693531618287	2474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4661	False	NA	19	True	AATAAA	-16	NA	87979757	88031141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
transcript_6208.nnic	chr1	+	679	5	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3278	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	60.9631035955356	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049344	171053942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_171049548_171050883_171050916_171052855_171052936_171053234_171053368_171053711
transcript_6209.nnic	chr1	+	646	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3277	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	24.4176620957499	33	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049345	171053942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_171049548_171052855_171052936_171053234_171053368_171053711
transcript_62101.known	chr17	+	1752	2	FSM	ENSMUSG00000024151.14	ENSMUST00000174240.2	1752	2	0	0	0	0	multi-exon	FALSE	canonical	3	1709	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4871	False	NA	NA	False	AATAGA	-20	NA	87979967	87987120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87980235_87985635
transcript_62102.known	chr17	+	2502	10	FSM	ENSMUSG00000024151.14	ENSMUST00000173097.8	2502	10	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_8	42.6796855137846	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAACCTATCCCA	4892	False	NA	NA	False	NA	NA	NA	87979988	88016836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879
transcript_62103.known	chr17	-	1972	2	FSM	ENSMUSG00000050138.9	ENSMUST00000055221.9	1972	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGTTTTCTAAAGAAAT	7972	False	NA	NA	False	AATAAA	-31	NA	88105422	88053228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_88054270_88104491
transcript_62129.known	chr17	+	4251	10	FSM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	0	0	0	0	multi-exon	FALSE	canonical	3	2207	junction_2	252.867310151411	2305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	31	True	AATAAA	-20	NA	88282489	88298320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
transcript_62143.nic	chr17	+	2723	4	ISM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	-87	4525	-87	1588	5prime_fragment	FALSE	canonical	3	2207	junction_2	20.0720922897661	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATCATTGATTTTCTCT	NA	False	NA	NA	False	AAGAAA	-17	NA	88282402	88293795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873
transcript_62146.known	chr17	+	5085	6	FSM	ENSMUSG00000034998.19	ENSMUST00000112238.9	5085	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_4	10.9288608738514	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTTTGTTATTTGTGAG	NA	False	NA	15	True	AATAAA	-19	NA	88748138	88797961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_88748313_88770140_88770692_88783283_88783379_88786703_88786769_88791828_88791898_88793830
transcript_62153.known	chr17	+	2892	3	FSM	ENSMUSG00000034998.19	ENSMUST00000134107.2	2892	3	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_2	4.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	88748185	88785497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_88748313_88770140_88770692_88783283
transcript_62154.nic	chr17	+	522	2	ISM	ENSMUSG00000034998.19	ENSMUST00000134107.2	2892	3	-60	15022	-13	10	5prime_fragment	FALSE	canonical	3	288	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCAACTTCAAAGCCCCC	NA	False	NA	NA	False	NA	NA	NA	88748125	88770475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr17_+_88748313_88770140
transcript_62162.known	chr17	+	3141	22	FSM	ENSMUSG00000034709.9	ENSMUST00000038551.8	3141	22	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	9.91871727497827	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCGGTCTGTGACAGTG	NA	False	NA	16	True	AATAAA	-17	NA	88837545	88895795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_88837747_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873162_88876507_88876636_88880030_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
transcript_62165.known	chr17	+	695	2	FSM	ENSMUSG00000034709.9	ENSMUST00000189734.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTGAATGGATAGGTTAA	NA	False	NA	NA	False	AATAAA	-11	NA	88837643	88850864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_88837747_88850272
transcript_62166.nnic	chr17	-	752	4	Antisense	novelGene_ENSMUSG00000033855.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_2	14.6590889515307	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTGACTTAGGGCCTACT	NA	False	NA	NA	False	TTTAAA	-1	NA	88932960	88923824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr17_-_88924018_88928723_88928829_88930105_88930383_88932783
transcript_6217.known	chr1	+	4386	9	FSM	ENSMUSG00000006403.14	ENSMUST00000219033.2	4386	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.3418742493994	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	171077991	171088205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171079039_171080105_171080430_171080655_171080789_171081461_171081633_171083716_171084004_171084096_171084284_171084523_171084700_171085287_171085464_171086320
transcript_62171.known	chr17	+	767	2	FSM	ENSMUSG00000033855.16	ENSMUST00000137138.2	767	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTACATCTGCGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	88905111	88943257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_88905170_88942548
transcript_62172.known	chr17	+	1621	9	FSM	ENSMUSG00000024154.12	ENSMUST00000024970.11	1621	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACACATTTACAACATAGT	NA	False	NA	NA	False	AATAAA	-19	NA	88976087	89022580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_88976160_88978621_88978724_88978926_88979048_88997414_88997471_88999145_88999231_89001530_89002097_89018868_89019127_89019783_89019874_89022309
transcript_62173.known	chr17	-	1988	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3726	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAACTTTGAGATG	NA	False	NA	NA	False	AATAAA	-34	NA	90217877	90215889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_90215900_90217900
transcript_62175.known	chr17	+	313	1	FSM	ENSMUSG00000117476.2	ENSMUST00000234959.2	313	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	319	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAACCCTCCCCCAATA	NA	False	NA	NA	False	NA	NA	NA	94915612	94915925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_94915600_94915900
transcript_6218.known	chr1	+	3761	8	FSM	ENSMUSG00000006403.14	ENSMUST00000111314.2	3761	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	2.0995626366713	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	171079684	171088206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171080430_171080655_171080789_171081461_171081633_171083716_171084004_171084096_171084284_171084523_171084700_171085287_171085464_171086320
transcript_62182.nic	chr17	-	2656	9	NIC	ENSMUSG00000055660.10	novel	2560	8	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_6	15.2151240547029	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTATAGTGAGTCTCT	NA	False	NA	NA	False	AATATA	-16	NA	95057480	95034512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95056813
transcript_62183.nic	chr17	-	2609	9	NIC	ENSMUSG00000055660.10	novel	6640	9	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	27.2488531868774	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTATAGTGAGTCTCT	NA	False	NA	NA	False	AATATA	-16	NA	95057484	95034512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95056864
transcript_62184.known	chr17	-	6640	9	FSM	ENSMUSG00000055660.10	ENSMUST00000234990.2	6640	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	34.5269369478383	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTGAGTTTTTAATTTA	NA	False	NA	68	True	AATAAA	-22	NA	95057320	95030017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95057164
transcript_62185.known	chr17	-	2560	8	FSM	ENSMUSG00000055660.10	ENSMUST00000171284.3	2560	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	27.8948462799061	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTATAGTGAGTCTCT	NA	False	NA	NA	False	AATATA	-16	NA	95057447	95034512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044_95055846_95056813
transcript_62192.nic	chr17	+	1328	10	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	48.1350979465191	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057498	95082560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
transcript_62193.known	chr17	+	1275	10	FSM	ENSMUSG00000098090.9	ENSMUST00000182402.8	1275	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	42.4223328093547	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057527	95082557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_62196.nnic	chr17	+	1200	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_3	47.0790558528949	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057498	95082560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_6220.known	chr1	-	1623	13	FSM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	0	0	0	0	multi-exon	FALSE	canonical	3	1142	junction_12	107.460457843804	1424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
transcript_62205.nnic	chr17	+	494	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-29	19018	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	29.2232783924049	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057498	95101578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95101454
transcript_62209.nnic	chr17	+	399	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-29	19018	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_3	26.8493740874697	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057498	95101578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr17_+_95057661_95063861_95063952_95092912_95092936_95101454
transcript_6221.known	chr1	-	1845	12	FSM	ENSMUSG00000013593.13	ENSMUST00000136976.7	1845	12	0	0	0	0	multi-exon	FALSE	canonical	3	1142	junction_11	112.190068946623	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
transcript_62210.known	chr17	+	799	3	FSM	ENSMUSG00000098090.9	ENSMUST00000182313.8	799	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	27	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAATAAATCAACCCAA	NA	False	NA	NA	False	AATACA	-2	NA	95057539	95064444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr17_+_95057661_95062638_95062734_95063861
transcript_62219.known	chr18	-	1996	8	FSM	ENSMUSG00000063889.17	ENSMUST00000154470.8	1996	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	25.7428412874535	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTTAGGAAAGGGTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	3337748	3267260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_3268130_3273421_3273579_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
transcript_6222.known	chr1	-	1545	12	FSM	ENSMUSG00000013593.13	ENSMUST00000111318.8	1545	12	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_7	412.075336127544	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
transcript_6223.known	chr1	-	1821	13	FSM	ENSMUSG00000062729.13	ENSMUST00000073120.11	1821	13	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_8	32.2076595444831	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5189	False	NA	-15	True	AGTAAA	-16	NA	171108760	171104564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
transcript_62241.known	chr18	-	1256	5	FSM	ENSMUSG00000063889.17	ENSMUST00000142690.2	1256	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	27.3072792493137	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTAGTCTTGTGCATTT	-5	True	NA	-6	True	AATAAA	-12	NA	3337574	3294481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
transcript_62247.known	chr18	-	1422	4	FSM	ENSMUSG00000063889.17	ENSMUST00000149803.8	1422	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	16.5797734872612	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTATGGAAGATCTT	-20	True	NA	NA	False	ATTAAA	-14	NA	3337589	3294183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_3295183_3295321_3295417_3325360_3325479_3337379
transcript_62258.nic	chr18	+	2826	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	-48	-77	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAATATTGTAATATGAC	NA	False	NA	-5	True	AATAAA	-3	NA	3382939	3435308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_62259.nic	chr18	+	2903	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	NA	False	NA	72	True	ATTAAA	-28	NA	3382939	3435385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_62261.known	chr18	+	3828	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	80.8420682565705	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAATTGTCAAGAAATGT	-12	True	NA	5	True	ATTAAA	-17	NA	3383231	3436377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_62263.known	chr18	+	2799	21	FSM	ENSMUSG00000024231.16	ENSMUST00000080089.11	2799	21	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	205.086591468092	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-19	True	NA	72	True	ATTAAA	-28	NA	3383224	3435385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414173_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_62268.known	chr18	+	3727	20	FSM	ENSMUSG00000024231.16	ENSMUST00000025073.12	3727	20	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_19	256.100893379987	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATACCAATTGTCAAGAAA	-35	True	NA	2	True	ATTAAA	-14	NA	3382987	3436374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3434843
transcript_62281.known	chr18	+	2686	1	FSM	ENSMUSG00000096528.2	ENSMUST00000179907.2	2686	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGGAATAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	3471629	3474315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_3471600_3474300
transcript_62288.known	chr18	-	2569	8	FSM	ENSMUSG00000024235.12	ENSMUST00000025078.10	2569	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	7.63450812336422	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTTGGGATTGTATATT	406	False	NA	NA	False	AATAAA	-26	NA	4353015	4331326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_4332437_4333817_4334065_4334616_4334770_4339496_4339604_4340546_4340809_4343021_4343190_4348980_4349339_4352851
transcript_62290.known	chr18	-	2048	2	FSM	ENSMUSG00000024235.12	ENSMUST00000172805.2	2048	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACTAAAAATAAAATTATG	406	False	NA	NA	False	NA	NA	NA	4353015	4347454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_4349339_4352851
transcript_62298.known	chr18	+	2626	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234422.2	2626	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	58.5340445809103	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTGATAACAGTATTTC	-8	True	NA	15	True	AATAAA	-16	NA	4375595	4397328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_4375779_4379568_4379742_4380672_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
transcript_62302.nnic	chr18	+	1949	9	NIC	ENSMUSG00000024234.8	novel	2110	9	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_5	68.9746330182336	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTAGTATCTATTTTCT	8645	False	NA	18	True	AATAAA	-20	NA	4375573	4396785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4387127_4387180_4394973_4395067_4395155_4395230_4396104
transcript_62310.known	chr18	+	3608	1	FSM	ENSMUSG00000024234.8	ENSMUST00000234614.2	3608	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAAGGAAAG	0	True	NA	NA	False	NA	NA	NA	4375603	4379211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_4375600_4379200
transcript_62311.known	chr18	+	922	4	FSM	ENSMUSG00000024234.8	ENSMUST00000235025.2	922	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	82.9471049658891	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGCTAGTGATTATTTC	-1	True	NA	NA	False	ATTAAA	-11	NA	4375602	4383523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383184
transcript_62312.known	chr18	+	6782	4	FSM	ENSMUSG00000033960.7	ENSMUST00000037029.7	6782	4	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_2	13.6950923894494	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGTATTGTGTCTT	NA	False	NA	14	True	AATAAA	-19	NA	4634877	4682869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_4635032_4649074_4649406_4672514_4676168_4680225
transcript_62324.nic	chr18	+	648	5	ISM	ENSMUSG00000024236.19	ENSMUST00000138258.8	1430	8	-189	11687	-24	-258	5prime_fragment	FALSE	canonical	3	34	junction_1	22.0383189014044	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAAGACTTTTTAGAAA	-32	True	NA	NA	False	AAGAAA	-16	NA	4920515	5046619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_4920875_4971089_4971198_5037107_5037166_5040147_5040240_5046588
transcript_62326.nic	chr18	+	580	4	ISM	ENSMUSG00000024236.19	ENSMUST00000126977.8	7907	38	-64	72672	-64	-258	5prime_fragment	FALSE	canonical	3	35	junction_1	20.6774165590278	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAAGACTTTTTAGAAA	NA	False	NA	NA	False	AAGAAA	-16	NA	4920475	5046619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_4920875_5037107_5037166_5040147_5040240_5046588
transcript_62330.known	chr18	-	3211	5	FSM	ENSMUSG00000050945.9	ENSMUST00000063989.7	3211	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	5.40832691319598	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTGTTGTTTTCTTAA	362	False	NA	NA	False	CATAAA	-17	NA	5334439	5210028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_5211199_5213118_5214920_5245385_5245454_5288860_5288939_5334345
transcript_62331.known	chr18	-	3112	5	FSM	ENSMUSG00000050945.9	ENSMUST00000234241.2	3112	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	6.20483682299543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTATTAGTCTCTGGT	-6	True	NA	NA	False	TATAAA	-18	NA	5334807	5210123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_5211199_5213118_5214920_5245385_5245454_5288860_5288939_5334717
transcript_62332.known	chr18	+	5801	8	FSM	ENSMUSG00000024238.16	ENSMUST00000025081.13	5801	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	9.45666809339164	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTGTTGTGATGTGTG	427	False	NA	NA	False	AATAAA	-19	NA	5591863	5775467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_5591968_5705042_5705244_5748693_5748856_5758964_5759168_5761327_5761434_5766220_5768026_5770383_5770565_5772428
transcript_62338.known	chr18	+	1938	2	FSM	ENSMUSG00000024238.16	ENSMUST00000160522.2	1938	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAGAAAGAAACTTAGAA	-14	True	NA	NA	False	AAGAAA	-11	NA	5591871	5706884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_5591968_5705042
transcript_62339.known	chr18	-	2718	19	FSM	ENSMUSG00000041225.17	ENSMUST00000062584.14	2718	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	55.2999955350164	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGGCCCTCATTTGCT	170	False	NA	NA	False	NA	NA	NA	6135892	6026431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6056978_6056994_6057516_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
transcript_62340.known	chr18	-	4265	19	FSM	ENSMUSG00000041225.17	ENSMUST00000182559.8	4265	19	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_11	38.5140666943045	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGAGTTTTTTTCCAT	NA	False	NA	-23	True	AATAAA	-14	NA	6136098	6025216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
transcript_62344.known	chr18	-	4431	18	FSM	ENSMUSG00000041225.17	ENSMUST00000077128.13	4431	18	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_11	36.3783463484115	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGGAAAAATTCTAAACCAG	40	True	NA	NA	False	NA	NA	NA	6135907	6024784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
transcript_62350.known	chr18	-	2500	17	FSM	ENSMUSG00000041225.17	ENSMUST00000182383.8	2500	17	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_13	36.3438440454501	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTCACAAAAGACAGCCTG	174	False	NA	NA	False	NA	NA	NA	6135888	6026555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
transcript_62372.known	chr18	-	1435	7	FSM	ENSMUSG00000041225.17	ENSMUST00000182038.2	1435	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	46.7240718354992	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAGAAATAATTAAAAGT	-8	True	NA	NA	False	NA	NA	NA	6135955	6061950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135817
transcript_6238.nic	chr1	-	2296	11	NIC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	-43	0	intron_retention	FALSE	canonical	3	42	junction_8	27.874002224295	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5146	False	NA	-15	True	AGTAAA	-16	NA	171108803	171104564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107830_171107961_171108097_171108247_171108343_171108446
transcript_62382.known	chr18	-	668	5	FSM	ENSMUSG00000041225.17	ENSMUST00000182614.8	668	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	43.6369969177532	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGAATCTCCTCCTAC	-23	True	NA	NA	False	NA	NA	NA	6135970	6057558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6135803
transcript_62383.known	chr18	-	679	5	FSM	ENSMUSG00000041225.17	ENSMUST00000181989.8	679	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	37.5166629646081	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGGGAATTGCCAAAGGT	6	True	NA	NA	False	NA	NA	NA	6135941	6064358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6064422_6065704_6065846_6069830_6070092_6073210_6073287_6135803
transcript_62386.known	chr18	-	6032	26	FSM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	215.348105169282	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGACGTATTAGCTTG	-5	True	NA	0	True	AATAAA	-42	NA	6241523	6201001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
transcript_62395.nic	chr18	-	2283	16	ISM	ENSMUSG00000006740.15	ENSMUST00000163210.2	2006	17	-63	0	-10	0	intron_retention	FALSE	canonical	3	809	junction_12	103.126373391528	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATGGAAGAAAATGA	-15	True	NA	NA	False	NA	NA	NA	6241533	6214568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
transcript_62396.nic	chr18	-	2215	16	ISM	ENSMUSG00000006740.15	ENSMUST00000163210.2	2006	17	-63	68	-10	-68	intron_retention	FALSE	canonical	3	809	junction_12	103.126373391528	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATCAGAAGTAAAGACC	-15	True	NA	NA	False	NA	NA	NA	6241533	6214636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
transcript_624.known	chr1	+	2146	11	FSM	ENSMUSG00000041809.6	ENSMUST00000038447.6	2146	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	4.06939798987516	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGTGCCTTATTTGGAG	NA	False	NA	12	True	NA	NA	NA	21021911	21061065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_21022021_21025558_21025781_21030353_21030642_21031376_21031527_21037547_21037741_21042998_21043220_21045122_21045264_21048866_21049081_21049633_21049782_21059591_21059827_21060840
transcript_6240.known	chr1	-	3043	11	FSM	ENSMUSG00000062729.13	ENSMUST00000152689.8	3043	11	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_8	29.1204395571221	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5189	False	NA	-15	True	AGTAAA	-16	NA	171108760	171104564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
transcript_62403.nic	chr18	-	1503	11	ISM	ENSMUSG00000006740.15	ENSMUST00000163210.2	2006	17	-83	8204	-30	-1913	intron_retention	FALSE	canonical	3	809	junction_7	115.848867063947	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTACGGAACACTATTCAG	NA	False	NA	NA	False	AATAAA	-2	NA	6241553	6222772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
transcript_62407.known	chr18	-	829	2	FSM	ENSMUSG00000006740.15	ENSMUST00000234166.2	829	2	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAATCCTGATGGAACTT	382	False	NA	NA	False	NA	NA	NA	6241136	6234228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6234903_6240981
transcript_62410.known	chr18	+	523	3	FSM	ENSMUSG00000117519.2	ENSMUST00000234972.2	523	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTTTTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	6240813	6268387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_6241164_6267754_6267830_6268289
transcript_62411.known	chr18	+	411	1	FSM	ENSMUSG00000073640.4	ENSMUST00000097682.4	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3499	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	33	False	NA	NA	False	NA	NA	NA	6332631	6333042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_6332600_6333000
transcript_62416.known	chr18	-	3965	14	FSM	ENSMUSG00000024240.14	ENSMUST00000028100.13	3965	14	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_13	6.05888266692776	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTGCAGTGGTCTTTGCC	-18	True	NA	-1	True	AATAAA	-27	NA	6490856	6435952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6490462
transcript_62417.known	chr18	-	3817	14	FSM	ENSMUSG00000024240.14	ENSMUST00000115870.9	3817	14	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_13	15.1118120655772	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTGGTCTTTGCCTT	NA	False	NA	1	True	AATAAA	-29	NA	6516108	6435950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6515864
transcript_62428.known	chr18	-	565	2	FSM	ENSMUSG00000024240.14	ENSMUST00000050542.6	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGTTATTTAACCTTTTA	-18	True	NA	NA	False	AATAAA	-15	NA	6490856	6489159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6489331_6490462
transcript_62432.known	chr18	+	729	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234626.2	729	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	405.244781993961	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACATCTTTCTGTATATA	17	True	NA	NA	False	TATAAA	-38	NA	6765212	6788693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_6765333_6770053_6770110_6778476_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
transcript_62438.known	chr18	-	3650	7	FSM	ENSMUSG00000061013.7	ENSMUST00000079788.7	3650	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	2.3392781412697	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGATCATATGGGAT	NA	False	NA	NA	False	AATAAA	-15	NA	7004780	6934517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_6937055_6937167_6937202_6992037_6992374_6992777_6992935_7000592_7000753_7002356_7002624_7004621
transcript_62440.known	chr18	-	4981	17	FSM	ENSMUSG00000057440.9	ENSMUST00000115869.4	4981	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_16	22.8061635035356	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGCTTTCAAGATTATTG	-22	True	NA	NA	False	ATTAAA	-20	NA	7626866	7347958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626732
transcript_62444.known	chr18	-	1784	13	FSM	ENSMUSG00000057440.9	ENSMUST00000234571.2	1784	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_12	25.7265265177145	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGTGCTCGTATTTTCC	-17	True	NA	NA	False	AATAAA	-27	NA	7626861	7379647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626732
transcript_62448.nic	chr18	-	1278	12	ISM	ENSMUSG00000057440.9	ENSMUST00000235093.2	3786	13	-65	4320	-29	13	5prime_fragment	FALSE	canonical	3	86	junction_11	9.14529188360676	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCCATGTATGAATGCA	NA	False	NA	NA	False	AATAAA	-1	NA	7626895	7403307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626728
transcript_6245.nic	chr1	-	2428	10	NIC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	-43	0	intron_retention	FALSE	canonical	3	53	junction_6	23.0656604361988	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5146	False	NA	-15	True	AGTAAA	-16	NA	171108803	171104564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171108097_171108247_171108343_171108446
transcript_62452.known	chr18	-	675	2	FSM	ENSMUSG00000057440.9	ENSMUST00000234366.2	675	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATCGG	-22	True	NA	NA	False	NA	NA	NA	7626866	7561335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_7561873_7626728
transcript_62454.known	chr18	+	3070	14	FSM	ENSMUSG00000024283.16	ENSMUST00000074919.11	3070	14	0	0	0	0	multi-exon	TRUE	canonical	3	146	junction_1	117.532571338518	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAACACATTTTGTTAC	7	True	NA	NA	False	AATAAA	-8	NA	7868849	7927067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
transcript_62458.known	chr18	+	5208	14	FSM	ENSMUSG00000024283.16	ENSMUST00000167020.8	5208	14	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_6	70.7547644077099	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGCAGTTATTTCAGAAT	12	True	NA	NA	False	AATAAA	-17	NA	7869196	7929028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_7869616_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
transcript_62461.known	chr18	+	1965	14	FSM	ENSMUSG00000024283.16	ENSMUST00000172018.8	1965	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_8	216.209245569708	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGTGAATAATTGCACAT	139	False	NA	NA	False	NA	NA	NA	7869500	7926139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_7869578_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917561_7917676_7918432_7918582_7920131_7920251_7921424_7921609_7921855_7921984_7926069
transcript_62466.known	chr18	+	1608	13	FSM	ENSMUSG00000024283.16	ENSMUST00000171486.8	1608	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	203.490171752839	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGTGAATAATTGCACAT	183	False	NA	NA	False	NA	NA	NA	7869065	7926139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7916051_7916298_7917561_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
transcript_62469.known	chr18	+	3094	13	FSM	ENSMUSG00000024283.16	ENSMUST00000092112.11	3094	13	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_6	129.708862029118	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTACCTTGGCTTTTTT	131	False	NA	NA	False	AATAAA	-22	NA	7869492	7927519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_7869616_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
transcript_62483.known	chr18	-	1096	1	FSM	ENSMUSG00000117505.2	ENSMUST00000234126.2	1096	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAAGTTAAAATGC	-21	True	NA	NA	False	ATTAAA	-2	NA	7869113	7868017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_7868000_7869100
transcript_62484.known	chr18	+	5974	1	FSM	ENSMUSG00000036904.7	ENSMUST00000041080.7	5974	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACTTGTTGAAGTCACT	0	True	NA	NA	False	ATTAAA	-14	NA	9212162	9218136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_9212200_9218100
transcript_62489.known	chr18	-	5757	10	FSM	ENSMUSG00000024286.9	ENSMUST00000053917.6	5757	10	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_9	12.9995251575197	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGACTTCATCTCATATG	18	False	9450168	0	True	AATAAA	-24	NA	9450150	9312303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_9316673_9319408_9319572_9332783_9332951_9345193_9345314_9345413_9345472_9349387_9349424_9353406_9353508_9377793_9377829_9386734_9386810_9449517
transcript_6249.nic	chr1	-	3224	10	NIC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	-43	0	intron_retention	FALSE	canonical	3	42	junction_7	25.6471787488951	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5146	False	NA	-15	True	AGTAAA	-16	NA	171108803	171104564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171107830_171107961_171108097_171108247_171108343_171108446
transcript_62492.nic	chr18	-	968	3	ISM	ENSMUSG00000024286.9	ENSMUST00000234844.2	1354	8	-508	61507	-40	8788	5prime_fragment	FALSE	canonical	3	51	junction_2	13	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGCTTTTAATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	9450194	9377612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_9377829_9386734_9386810_9449517
transcript_62493.known	chr18	+	8024	10	FSM	ENSMUSG00000036103.10	ENSMUST00000234965.2	8024	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	3.52066211505664	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTATCTGTGTTCTAAAT	0	True	NA	NA	False	NA	NA	NA	9707594	9882644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_9707760_9720920_9720972_9840238_9840362_9846786_9846886_9848103_9849151_9858545_9859035_9859837_9859975_9866743_9866854_9874788_9874935_9876987
transcript_62498.known	chr18	+	4134	21	FSM	ENSMUSG00000024287.9	ENSMUST00000025137.9	4134	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	177.913574524262	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTTGTTTACACATTATG	NA	False	NA	NA	False	ATTAAA	-24	NA	9957905	9995489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
transcript_62501.nic	chr18	+	2323	20	NIC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	-13	0	intron_retention	FALSE	canonical	0	0	junction_16	182.47716815401	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGTACAGTTGGCTGG	-17	True	NA	14	True	AATAAA	-14	NA	9958149	9993725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
transcript_62518.known	chr18	-	4726	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGTGTTTTAAGTGA	-60	True	NA	NA	False	NA	NA	NA	10030141	9993065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
transcript_62528.known	chr18	-	2019	15	FSM	ENSMUSG00000047879.18	ENSMUST00000116669.2	2019	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	235.664107213151	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACTTGATTATACACT	14	True	NA	-65	True	AATAAA	-15	NA	10030067	9995593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10022817_10022851_10024533_10024680_10029912
transcript_6254.nic	chr1	+	2118	9	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	-14	0	combination_of_known_junctions	FALSE	non_canonical	1	46	junction_1	80.4478674359986	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	14	True	AATAAA	-14	NA	171097883	171104467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_62545.nic	chr18	-	921	9	ISM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	13	12604	13	3683	5prime_fragment	FALSE	canonical	3	825	junction_2	52.9030658374352	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTAATTGATCAATATTTT	-47	True	NA	NA	False	AAAAAG	-5	NA	10030128	10005669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
transcript_62547.known	chr18	-	1346	7	FSM	ENSMUSG00000047879.18	ENSMUST00000128334.8	1346	7	0	0	0	0	multi-exon	FALSE	canonical	3	830	junction_4	53.4334996878259	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	0	True	NA	NA	False	NA	NA	NA	10030081	10009352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
transcript_62550.known	chr18	+	891	4	FSM	ENSMUSG00000024287.9	ENSMUST00000234890.2	891	4	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_2	35.5621521658443	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCTAGAAAATTATATGAGA	10	True	NA	NA	False	AATAGA	-36	NA	9958176	9961171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485
transcript_62554.known	chr18	+	2047	2	FSM	ENSMUSG00000024287.9	ENSMUST00000234805.2	2047	2	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAATGAAAAAAAGAAGA	13	True	NA	NA	False	AATAAA	-1	NA	9958179	9961077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_9958247_9959097
transcript_62555.known	chr18	-	639	2	FSM	ENSMUSG00000047879.18	ENSMUST00000150321.2	639	2	0	0	0	0	multi-exon	FALSE	canonical	3	926	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTGTTATAAGTATAC	59	True	NA	NA	False	NA	NA	NA	10030022	10024150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_10024680_10029912
transcript_62557.known	chr18	-	6440	33	FSM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	0	0	0	0	multi-exon	TRUE	canonical	3	139	junction_22	28.5588755906111	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGACTTGGGCTCTAAAAC	-2	True	NA	NA	False	ATTAAA	-21	NA	10182045	10064400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_10066052_10067470_10067679_10070218_10070481_10070621_10070701_10072831_10072921_10073114_10073186_10079114_10079275_10080350_10080540_10083121_10083211_10084317_10084412_10090812_10090979_10092128_10092224_10093907_10093978_10095412_10095598_10097482_10097644_10099256_10099408_10100921_10101029_10104073_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116863_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
transcript_62560.nic	chr18	-	3543	22	ISM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	-203	27770	-203	4766	5prime_fragment	FALSE	canonical	3	139	junction_11	25.3011790212224	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCGAGAAAATTTAAGGAAAA	NA	False	NA	NA	False	AGTAAA	-31	NA	10182248	10092170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_10092224_10093907_10093978_10095412_10095598_10097482_10097644_10099256_10099408_10100921_10101029_10104073_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116863_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
transcript_62563.nic	chr18	-	3074	18	ISM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	-203	34856	-203	-2320	5prime_fragment	FALSE	canonical	3	139	junction_7	21.5075427342053	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGCCACTTAATGTGC	NA	False	NA	NA	False	NA	NA	NA	10182248	10099256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_10099408_10100921_10101029_10104073_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116863_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
transcript_62566.nic	chr18	-	2922	17	ISM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	-203	36522	-203	-3986	5prime_fragment	FALSE	canonical	3	139	junction_6	21.8352317081821	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATGATTTACTGTCCT	NA	False	NA	6	True	AAGAAA	-34	NA	10182248	10100922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_10101029_10104073_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116863_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
transcript_62568.nic	chr18	-	2697	16	ISM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	-203	39792	-203	2158	5prime_fragment	FALSE	canonical	3	139	junction_5	20.7846096908265	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAATTTTAGAGAATTCCA	NA	False	NA	NA	False	AAGAAA	-1	NA	10182248	10104192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116863_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
transcript_62571.known	chr18	-	1989	14	FSM	ENSMUSG00000024290.10	ENSMUST00000234734.2	1989	14	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_3	40.6931074517889	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGAAGAGAAGAAATATAG	411	False	NA	-2	True	AAGAAA	-16	NA	10181792	10106350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_10106458_10112343_10112393_10116773_10116860_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
transcript_62574.nic	chr18	-	2316	13	ISM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	-203	47968	-203	-2725	5prime_fragment	FALSE	canonical	3	139	junction_2	17.6546736021938	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAATGAAAGAATTGGATG	NA	False	NA	2	True	NA	NA	NA	10182248	10112368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_10112393_10116773_10116863_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
transcript_62579.nic	chr18	-	1083	2	ISM	ENSMUSG00000024290.10	ENSMUST00000234734.2	1989	14	-456	43907	-203	-40614	5prime_fragment	FALSE	canonical	3	145	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGACAACTTTCTAAGCA	NA	False	NA	NA	False	AAGAAA	-10	NA	10182248	10150257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_10150317_10181224
transcript_62580.known	chr18	-	2735	1	FSM	ENSMUSG00000024290.10	ENSMUST00000235075.2	2735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAGAAAGAAAGAAA	4478	False	NA	NA	False	NA	NA	NA	10112378	10109643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_10109600_10112400
transcript_62583.known	chr18	-	4545	11	FSM	ENSMUSG00000024293.17	ENSMUST00000025142.13	4545	11	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	14.2393820090621	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCACTAGCTTGCAATT	2	True	NA	-6	True	ATTAAA	-21	NA	10610352	10566506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
transcript_62586.known	chr18	-	2249	11	FSM	ENSMUSG00000024293.17	ENSMUST00000145320.2	2249	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	42.8836798794133	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAGCTTTTTCTAAGTGA	245	False	10610134	-48	True	AATAAA	-14	NA	10610109	10566629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10595675_10595876_10596338_10596442_10610025
transcript_62589.nic	chr18	-	1735	3	ISM	ENSMUSG00000024293.17	ENSMUST00000127099.9	4572	12	6	27963	6	1341	5prime_fragment	FALSE	canonical	3	135	junction_1	2	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGCCTGTAACTGCTGA	8	True	NA	NA	False	AATAAA	-2	NA	10610346	10594564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_10595876_10596338_10596442_10610025
transcript_62592.nic	chr18	-	1115	3	ISM	ENSMUSG00000024293.17	ENSMUST00000127099.9	4572	12	-65	28654	-65	650	5prime_fragment	FALSE	canonical	3	135	junction_1	2	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTCCATAGTTACTAAAG	NA	False	NA	NA	False	AAGAAA	-2	NA	10610417	10595255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_10595876_10596338_10596442_10610025
transcript_62596.known	chr18	+	858	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	0	0	0	0	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCGGTGCATGTCTTTA	-32	True	NA	8	True	AATAAA	-15	NA	10617774	10628230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
transcript_62597.known	chr18	+	439	4	FSM	ENSMUSG00000002477.6	ENSMUST00000234207.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	847.378047600689	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAGTGTAGGGACAGA	-11	True	NA	2	True	NA	NA	NA	10617795	10627955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_10617927_10623630_10623708_10626948_10627018_10627793
transcript_62601.known	chr18	-	1962	9	FSM	ENSMUSG00000002475.17	ENSMUST00000117828.9	1962	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	3.63145976158349	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTTTGTGAGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	10706771	10644410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_10645236_10647725_10647892_10647969_10648019_10652187_10652362_10658779_10658893_10682068_10682115_10704547_10704731_10706000_10706165_10706529
transcript_62602.known	chr18	+	10231	21	FSM	ENSMUSG00000024294.15	ENSMUST00000052838.11	10231	21	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	10.1237344888139	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTATATTTTATCATTG	0	True	NA	NA	False	AATAAA	-18	NA	10725547	10818578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_10726534_10740982_10741155_10743268_10743399_10747355_10747461_10749322_10749390_10751822_10752028_10755503_10755688_10760803_10760949_10763188_10763323_10768123_10768232_10775528_10775727_10778148_10778301_10792894_10793028_10794477_10794565_10795689_10795852_10798351_10798534_10800055_10800249_10802260_10802340_10804686_10804801_10808033_10808135_10811984
transcript_62606.known	chr18	+	3234	7	FSM	ENSMUSG00000005836.11	ENSMUST00000047762.10	3234	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.897527467855751	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCCTTCCTTTTCATCTT	1	True	NA	NA	False	AATAAA	-30	NA	11052469	11085635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_11052744_11054035_11055190_11059051_11059219_11063017_11063144_11064509_11064598_11064687_11064792_11084314
transcript_62612.known	chr18	+	3209	19	FSM	ENSMUSG00000041238.17	ENSMUST00000047322.8	3209	19	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	21.3625378803961	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAAAATGTGGATG	3291	False	NA	9	True	ATTAAA	-31	NA	11790485	11875935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
transcript_6262.nic	chr1	-	3356	9	NIC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	-43	0	intron_retention	FALSE	canonical	3	87	junction_7	17.1386806668425	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5146	False	NA	-15	True	AGTAAA	-16	NA	171108803	171104564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171108097_171108247_171108343_171108446
transcript_62623.nic	chr18	+	3463	19	NIC	ENSMUSG00000041238.17	novel	3209	19	NA	NA	-9	-57	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	44.3982051133146	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTATAAATGAGTTTTC	3261	False	NA	25	True	AATAAA	-36	NA	11790455	11875878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
transcript_62624.nic	chr18	+	3100	19	NIC	ENSMUSG00000041238.17	novel	781	8	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	44.3982051133146	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAAAATGTGGATG	3681	False	NA	9	True	ATTAAA	-31	NA	11790875	11875935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
transcript_62625.nic	chr18	+	3217	19	NIC	ENSMUSG00000041238.17	novel	781	8	NA	NA	-16	124	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	44.3982051133146	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGTAGTCTATAATTT	3688	False	NA	9	True	NA	NA	NA	11790882	11876059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
transcript_62642.nic	chr18	+	2567	14	ISM	ENSMUSG00000041238.17	ENSMUST00000047322.8	3209	19	-80	15603	-34	4298	5prime_fragment	FALSE	canonical	3	177	junction_1	19.0846758440118	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTCCAAGTAAGATTTGT	3211	False	NA	NA	False	AAAAAG	-4	NA	11790405	11860332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229
transcript_62645.nic	chr18	+	2378	14	NIC	ENSMUSG00000041238.17	novel	781	8	NA	NA	-23	4298	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	47.4447670155494	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTCCAAGTAAGATTTGT	3681	False	NA	NA	False	AAAAAG	-4	NA	11790875	11860332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229
transcript_62650.known	chr18	+	3714	5	FSM	ENSMUSG00000041238.17	ENSMUST00000234184.2	3714	5	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	25.5966306376445	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAGA	3270	False	NA	NA	False	NA	NA	NA	11790464	11829151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068
transcript_62651.known	chr18	+	586	5	FSM	ENSMUSG00000041238.17	ENSMUST00000234499.2	586	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	76.9967531782997	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTGAGTTCCCTTTCA	3704	False	NA	NA	False	NA	NA	NA	11790898	11826176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068
transcript_62654.known	chr18	-	2365	1	FSM	ENSMUSG00000117634.2	ENSMUST00000235010.2	2365	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTGAAGCTATGATTA	NA	False	NA	NA	False	AAAAAG	-2	NA	11790841	11788476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_11788500_11790800
transcript_62655.known	chr18	+	3396	10	FSM	ENSMUSG00000040957.16	ENSMUST00000171109.9	3396	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	6.21428064627092	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTGTGTGTGAACATG	NA	False	NA	NA	False	ATTAAA	-25	NA	11972276	12078683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_11973591_12015770_12015843_12021793_12021887_12038981_12039060_12056416_12056514_12057871_12058029_12059317_12059422_12072775_12072883_12074236_12074445_12077517
transcript_62657.known	chr18	+	3202	9	FSM	ENSMUSG00000040957.16	ENSMUST00000046948.10	3202	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	10.1357967126418	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTTGAAGAGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	11972330	12078621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_11973591_12015770_12015843_12021793_12021887_12056416_12056514_12057871_12058029_12059317_12059422_12072775_12072883_12074236_12074445_12077517
transcript_62658.known	chr18	-	1426	15	FSM	ENSMUSG00000049411.16	ENSMUST00000209859.2	1426	15	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	4.03871569806491	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACAAGACATGTATGT	NA	False	NA	NA	False	NA	NA	NA	12254587	12116132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_12116651_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12246451_12246530_12251460_12251508_12254437
transcript_62664.known	chr18	-	2597	15	FSM	ENSMUSG00000049411.16	ENSMUST00000055447.14	2597	15	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	6.51097973755541	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTATGTTTATAAGC	NA	False	NA	NA	False	TTTAAA	-17	NA	12254571	12114994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_12116700_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12246451_12246530_12251460_12251508_12254437
transcript_62666.known	chr18	+	3790	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGTGATTGGAGAGAATT	5505	False	NA	NA	False	NA	NA	NA	12261797	12290444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
transcript_62688.known	chr18	-	5224	25	FSM	ENSMUSG00000024413.15	ENSMUST00000025279.6	5224	25	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_11	10.5137971521024	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGGTCTTTTATTGCA	NA	False	NA	-26	True	AATAAA	-16	NA	12369457	12322749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620_12334804_12335177_12335368_12337827_12337931_12341363_12341465_12343438_12343666_12344542_12344914_12345251_12345326_12346313_12346564_12347387_12347556_12352234_12352411_12354862_12354970_12356089_12356213_12369237
transcript_62697.known	chr18	+	2170	20	FSM	ENSMUSG00000024410.16	ENSMUST00000025276.15	2170	20	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_9	24.4724957266604	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATGTTGCTAACTCCC	NA	False	NA	NA	False	AATAAA	-45	NA	12301773	12323054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
transcript_627.known	chr1	-	6492	11	FSM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	7.25534285888682	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTCTGATAGGCTTCAC	NA	False	NA	-5	True	AATAAA	-24	NA	21149453	21066522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_21071860_21073193_21073358_21074061_21074206_21074449_21074555_21075790_21075862_21076373_21076459_21077076_21077136_21083016_21083134_21083625_21083736_21107620_21107685_21149217
transcript_6270.known	chr1	+	1998	8	FSM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	0	0	0	0	multi-exon	FALSE	non_canonical	1	74	junction_2	53.1005976368228	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTTGTGATTTCTGCA	NA	False	NA	15	True	AATAAA	-15	NA	171097897	171104468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_62712.known	chr18	+	2297	19	FSM	ENSMUSG00000024410.16	ENSMUST00000127123.8	2297	19	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_9	24.871831952861	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	False	NA	NA	False	AATAAA	-22	NA	12301808	12323031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
transcript_62716.nic	chr18	+	2092	19	NIC	ENSMUSG00000024410.16	novel	2170	20	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	65.1417258325602	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	False	NA	NA	False	AATAAA	-22	NA	12301751	12323031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_12301960_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
transcript_62728.known	chr18	+	1282	9	FSM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	11.1740491765519	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATTTGATTTGATGTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	12301773	12314177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722
transcript_6273.nic	chr1	+	1890	8	NIC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	74.0904025842892	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	14	True	AATAAA	-14	NA	171097883	171104467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_171097985_171098772_171098944_171099397_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_62731.nnic	chr18	+	5637	38	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	-1366	-52	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	19.91739698612	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAATTGCTACAGTTCAT	NA	False	NA	NA	False	AATACA	-15	NA	12635889	12716018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_12636222_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
transcript_62732.nnic	chr18	+	5732	38	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	-1409	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	19.91739698612	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGATGTTTTATAAGCAA	NA	False	NA	NA	False	AATAAA	-19	NA	12635846	12716070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_12636222_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
transcript_62733.known	chr18	+	5551	38	FSM	ENSMUSG00000024421.17	ENSMUST00000188815.2	5551	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	23.7260971177562	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGATGTTTTATAAGCAA	NA	False	NA	NA	False	AATAAA	-19	NA	12637255	12716070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_12637453_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664891_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
transcript_62735.nnic	chr18	+	4816	32	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	19796	-52	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	16.1479888600645	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAATTGCTACAGTTCAT	4998	False	NA	NA	False	AATACA	-15	NA	12657051	12716018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_12657178_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
transcript_62736.nnic	chr18	+	4868	32	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	19796	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	16.1479888600645	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGATGTTTTATAAGCAA	4998	False	NA	NA	False	AATAAA	-19	NA	12657051	12716070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_12657178_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
transcript_62743.known	chr18	+	1950	14	FSM	ENSMUSG00000024424.16	ENSMUST00000169401.8	1950	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	13.7926315977239	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTGTGACCTTGCAGGA	NA	False	NA	2	True	AATAAA	-16	NA	12732982	12870107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_12733061_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
transcript_62748.known	chr18	+	4385	14	FSM	ENSMUSG00000024424.16	ENSMUST00000234966.2	4385	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	8.52563138615225	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGATGTGGATTGTGT	NA	False	NA	NA	False	ATTAAA	-25	NA	12776400	12871920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_12777101_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
transcript_62757.known	chr18	+	3243	3	FSM	ENSMUSG00000024424.16	ENSMUST00000141060.2	3243	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACGATGGATTGCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	12776400	12822502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_12777101_12817893_12817943_12820008
transcript_62758.known	chr18	+	1910	14	FSM	ENSMUSG00000024424.16	ENSMUST00000234255.2	1910	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	17.4637409658043	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATGCCCGACCTGGGAGA	NA	False	NA	-90	True	AATAAA	-17	NA	12732952	12870015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_12733061_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869014_12869076_12869730
transcript_6276.known	chr1	-	4412	8	FSM	ENSMUSG00000062729.13	ENSMUST00000155083.9	4412	8	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_6	18.2633792165679	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGGGGATTTTCCTC	5189	False	NA	NA	False	AATAAA	-12	NA	171108760	171103562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171104773_171104858_171104902_171105019_171105378_171105454_171105574_171105707_171106888_171107003_171108097_171108247_171108343_171108446
transcript_62763.known	chr18	-	3956	28	FSM	ENSMUSG00000044252.19	ENSMUST00000074352.11	3956	28	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_13	124.793898676083	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTCAGTTGATATTGT	NA	False	NA	-8	True	AATAAA	-39	NA	13074898	12888370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
transcript_62772.nic	chr18	-	2682	24	ISM	ENSMUSG00000044252.19	ENSMUST00000074352.11	3956	28	-88	7288	-88	0	5prime_fragment	FALSE	canonical	3	91	junction_9	110.461568131303	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAACACAGAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	13074986	12895658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
transcript_62786.known	chr18	-	2674	15	FSM	ENSMUSG00000044252.19	ENSMUST00000121888.8	2674	15	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	113.316357772281	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12995480	12888384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_12889153_12889244_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
transcript_62791.known	chr18	-	2353	15	FSM	ENSMUSG00000044252.19	ENSMUST00000132594.8	2353	15	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.9584093140327	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAAAAGAATTCTTTCA	NA	False	NA	NA	False	TATAAA	-15	NA	13074898	13003274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
transcript_62795.known	chr18	-	3030	14	FSM	ENSMUSG00000044252.19	ENSMUST00000121808.8	3030	14	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_13	88.7068171466208	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTCAGTTGATATTGT	NA	False	NA	-8	True	AATAAA	-39	NA	12995730	12888370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
transcript_62796.known	chr18	-	2818	14	FSM	ENSMUSG00000044252.19	ENSMUST00000234871.2	2818	14	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_13	91.3749671156418	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996497	12888384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996128
transcript_62801.known	chr18	-	2893	13	FSM	ENSMUSG00000044252.19	ENSMUST00000118313.8	2893	13	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_12	94.3352473304061	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12995770	12888384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12995163
transcript_62811.nic	chr18	-	2416	10	ISM	ENSMUSG00000044252.19	ENSMUST00000121808.8	3030	14	-748	7288	19	0	5prime_fragment	FALSE	canonical	3	56	junction_9	94.3061732920367	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAACACAGAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	12996478	12895658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
transcript_62813.known	chr18	-	2687	14	FSM	ENSMUSG00000044252.19	ENSMUST00000117361.8	2687	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_13	98.4808875218973	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996437	12888384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996199
transcript_62815.nic	chr18	-	2266	9	ISM	ENSMUSG00000044252.19	ENSMUST00000118313.8	2893	13	-721	7274	6	0	5prime_fragment	FALSE	canonical	3	43	junction_8	103.70202203911	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAACACAGAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	12996491	12895658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12995163
transcript_62827.nic	chr18	-	598	5	ISM	ENSMUSG00000044252.19	ENSMUST00000122175.8	1203	12	-74	16403	-10	-7575	5prime_fragment	FALSE	canonical	3	113	junction_3	7.59522876548166	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAACATGCTTGAAGGT	NA	False	NA	NA	False	AAGAAA	-1	NA	13074908	13047576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
transcript_6283.known	chr1	+	2805	6	FSM	ENSMUSG00000052423.16	ENSMUST00000129985.4	2805	6	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	25.5029410068721	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTGATTTCTGCAT	NA	False	NA	16	True	AATAAA	-16	NA	171097943	171104469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171097985_171098772_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_62830.known	chr18	-	681	4	FSM	ENSMUSG00000044252.19	ENSMUST00000141651.2	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	8.64098759787715	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCCCCTAAAAGTGAAGTC	NA	False	NA	NA	False	NA	NA	NA	13074849	13061081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_13061393_13062064_13062151_13066636_13066760_13074688
transcript_62835.known	chr18	+	3763	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	561	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	16	True	NA	NA	NA	13104979	13126007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
transcript_62846.known	chr18	-	6206	8	FSM	ENSMUSG00000024420.10	ENSMUST00000025288.9	6206	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.11022015101103	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTGTCAAATTTGAATA	NA	False	NA	NA	False	AATAAA	-15	NA	14105844	13820069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_13822082_13848197_13848314_13850672_13850805_13950294_13950380_13976838_13980192_14072018_14072199_14104420_14104462_14105557
transcript_62847.known	chr18	-	5032	7	FSM	ENSMUSG00000024420.10	ENSMUST00000234410.2	5032	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.18416219575713	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGAGTGTATTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	14104777	13821272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_13822082_13848197_13848314_13850672_13850805_13950294_13950380_13976838_13980192_14072018_14072199_14104420
transcript_6285.known	chr1	+	2098	9	FSM	ENSMUSG00000052423.16	ENSMUST00000111313.10	2098	9	0	0	0	0	multi-exon	FALSE	non_canonical	1	1	junction_1	95.4135734578681	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTGATTTCTGCAT	NA	False	NA	16	True	AATAAA	-16	NA	171097912	171104469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171097985_171098561_171098676_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_62853.known	chr18	-	3098	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTTTCTTTAAATTAG	NA	False	NA	-13	True	AATAAA	-23	NA	14815971	14758679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_62860.known	chr18	-	4153	10	FSM	ENSMUSG00000037013.18	ENSMUST00000040964.13	4153	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	374.482193942845	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGACCCTCCTATTTGTT	NA	False	NA	NA	False	AATAAA	-33	NA	14815823	14757254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_62864.known	chr18	-	2911	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	-21	True	AATAAA	-15	NA	14815885	14758687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_62867.known	chr18	-	2603	9	FSM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	300.413048984228	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATAAATTATTTGTGA	NA	False	NA	-45	True	TTTAAA	-19	NA	14815823	14758711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_62868.nnic	chr18	-	2759	9	NIC	ENSMUSG00000037013.18	novel	2911	10	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	296.915812984085	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	-19	True	AATAAA	-17	NA	14815836	14758685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_14760369_14766599_14766734_14769552_14769676_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_62872.known	chr18	-	2196	7	FSM	ENSMUSG00000037013.18	ENSMUST00000234997.2	2196	7	0	0	0	0	multi-exon	FALSE	canonical	3	797	junction_1	71.6792624590032	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTTAAAGTACATCTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	14815821	14772026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_62874.known	chr18	+	1692	7	FSM	ENSMUSG00000036743.5	ENSMUST00000040860.3	1692	7	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_2	7.18795288428261	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTGTCTCCTTCAA	NA	False	NA	10	True	NA	NA	NA	14839207	14895355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
transcript_62888.known	chr18	+	5134	15	FSM	ENSMUSG00000054321.8	ENSMUST00000234789.2	5134	15	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_13	8.14912039825809	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTTTTTTGTTGTCAGT	NA	False	NA	NA	False	AATACA	-11	NA	14916301	15033416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_14916992_14929969_14930116_14932135_14932244_14937522_14937685_14937773_14937897_14940401_14940492_14946147_14946748_14954494_14954613_14955150_14955263_14963075_14963246_14968848_14968980_14974961_14975088_14977470_14977528_14992228_14992334_15031020
transcript_6289.known	chr1	-	2219	13	FSM	ENSMUSG00000053483.16	ENSMUST00000065941.12	2219	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	116.920794652714	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTTGTATTTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	171115564	171109518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
transcript_62899.known	chr18	+	534	1	FSM	ENSMUSG00000058064.7	ENSMUST00000079733.7	534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1749	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTGATCCAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	15965850	15966384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_15965800_15966400
transcript_629.known	chr1	+	1261	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027064.8	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	35.5984550226551	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTTCTCATTCATTTC	NA	False	NA	14	True	AATAAA	-14	NA	21288885	21300388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299631
transcript_6290.nnic	chr1	-	2145	13	NNC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	149.481511305654	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTTCATGTTTGTATT	NA	False	NA	NA	False	AATAAA	-16	NA	171115554	171109522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115394
transcript_62901.known	chr18	-	4630	17	FSM	ENSMUSG00000024331.12	ENSMUST00000039247.11	4630	17	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	4.14907745770069	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGCAGGTGGTGAAGAT	NA	False	NA	NA	False	AATAAA	-17	NA	20192611	20163689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_20165461_20165546_20165593_20166118_20166380_20167641_20167767_20168332_20168570_20171109_20171335_20174491_20174635_20174753_20175011_20176782_20176969_20177197_20177333_20178460_20178628_20179291_20179437_20180121_20180278_20181331_20181452_20183062_20183263_20184232_20184318_20192240
transcript_62903.known	chr18	-	4508	16	FSM	ENSMUSG00000024331.12	ENSMUST00000075214.9	4508	16	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	3.07245829914744	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGCAGGTGGTGAAGAT	NA	False	NA	NA	False	AATAAA	-17	NA	20192535	20163689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_20165461_20166118_20166380_20167641_20167767_20168332_20168570_20171109_20171335_20174491_20174635_20174753_20175011_20176782_20176969_20177197_20177333_20178460_20178628_20179291_20179437_20180121_20180278_20181331_20181452_20183062_20183263_20184232_20184318_20192240
transcript_62906.nnic	chr18	+	5570	16	NNC	ENSMUSG00000044393.16	novel	5766	15	NA	NA	-47	-187	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	43.6	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACAACTCAGTCTTGCGC	NA	False	NA	NA	False	AATACA	-43	NA	20691083	20737391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764_20715903_20715993_20716180_20723004_20723271_20724890_20725034_20725328_20725557_20727120_20727349_20729016_20729139_20731395_20731726_20734369_20736600_20736655
transcript_62909.known	chr18	+	5766	15	FSM	ENSMUSG00000044393.16	ENSMUST00000059787.15	5766	15	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_4	15.0483913303932	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAACCTCTCTCCATGTCT	NA	False	NA	10	True	AATAAA	-19	NA	20691130	20737578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764_20715903_20715993_20716180_20723004_20723271_20724890_20725034_20725328_20725557_20727120_20727349_20729016_20729139_20731395_20731726_20734369
transcript_62916.nic	chr18	+	2997	12	ISM	ENSMUSG00000044393.16	ENSMUST00000059787.15	5766	15	-18	9356	-18	-9356	5prime_fragment	FALSE	canonical	3	147	junction_4	15.7967461865615	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTATTCAGGTAAGTCAAA	NA	False	NA	NA	False	NA	NA	NA	20691112	20728222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764_20715903_20715993_20716180_20723004_20723271_20724890_20725034_20725328_20725557_20727120
transcript_62920.known	chr18	+	3590	8	FSM	ENSMUSG00000044393.16	ENSMUST00000120102.8	3590	8	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_4	17.2449341866544	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAATGGCTACAATACA	NA	False	NA	NA	False	NA	NA	NA	20691211	20718610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764_20715903_20715993
transcript_62921.known	chr18	+	953	7	FSM	ENSMUSG00000044393.16	ENSMUST00000121837.2	953	7	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_4	16.303544263612	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTGTGTTCTTTAG	NA	False	NA	NA	False	AATAAA	-2	NA	20691302	20715973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764
transcript_62922.nic	chr18	+	452	4	ISM	ENSMUSG00000044393.16	ENSMUST00000121837.2	953	7	-155	3850	17	-3850	5prime_fragment	FALSE	canonical	3	171	junction_1	9.7410927974683	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGATAAAAATCACGTACAA	NA	False	NA	NA	False	AAGAAA	-3	NA	20691147	20712123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096
transcript_62923.known	chr18	-	370	1	FSM	ENSMUSG00000091449.4	ENSMUST00000165229.4	370	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGATGACAACGACAACAAA	NA	False	NA	NA	False	NA	NA	NA	20816020	20815650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_20815600_20816000
transcript_62931.known	chr18	-	5808	9	FSM	ENSMUSG00000056124.6	ENSMUST00000070080.6	5808	9	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_5	29.4098197886352	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTGATGTCATTGTT	NA	False	NA	-3	True	AATATA	-16	NA	20879461	20817655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_20821526_20821991_20822094_20822277_20822401_20825448_20825637_20833795_20833913_20839461_20839587_20853085_20853200_20861018_20861136_20878409
transcript_62941.known	chr18	-	5194	29	FSM	ENSMUSG00000033382.16	ENSMUST00000225661.3	5194	29	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_23	36.8553951689739	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTAGCCTAGTTTCCTG	NA	False	NA	-22	True	AATAAA	-19	NA	21029150	20950279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999264_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
transcript_62949.known	chr18	-	2703	16	FSM	ENSMUSG00000033382.16	ENSMUST00000097658.2	2703	16	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	46.2449516764323	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTGTTCTATGGTCAT	NA	False	NA	-2	True	AATAAA	-28	NA	21029135	20979201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999264_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119_21018315_21028967
transcript_62958.known	chr18	+	1348	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTGGGTGTGGTGGCG	5341	False	NA	NA	False	NA	NA	NA	21077681	21116919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
transcript_62962.known	chr18	+	1406	6	FSM	ENSMUSG00000033107.7	ENSMUST00000234316.2	1406	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	19.3349424617711	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCTGCGTTTGAAGTGT	1219	False	NA	NA	False	AATATA	-11	NA	21094528	21116781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
transcript_62969.known	chr18	+	2422	8	FSM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	133.739008703443	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134397	21160592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
transcript_62975.known	chr18	+	3002	7	FSM	ENSMUSG00000024317.16	ENSMUST00000072847.12	3002	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	148.868416917611	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTGTGTCTTAATTAAA	NA	False	NA	2	True	ATTAAA	-14	NA	21134397	21161280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
transcript_62979.known	chr18	+	2271	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134964	21160592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
transcript_6298.nnic	chr1	-	2172	12	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	-17	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	156.020077114485	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTTCATGTTTGTATT	NA	False	NA	NA	False	AATAAA	-16	NA	171115581	171109522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113922_171114544_171115334
transcript_62986.known	chr18	+	2769	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	3	True	ATTAAA	-15	NA	21135047	21161281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
transcript_62993.known	chr18	+	1769	5	FSM	ENSMUSG00000024317.16	ENSMUST00000234545.2	1769	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	174.891930917353	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAATCTCTGAAGTA	NA	False	NA	NA	False	TTTAAA	-13	NA	21135151	21160442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21159142
transcript_63.known	SIRV1	-	670	5	FSM	SIRV1A	SIRV105	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_4	2187.81237769604	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTGGAAGTCAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	10640	6449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV1_-_6474_6560_6814_7552_7815_10282_10367_10593
transcript_630.known	chr1	+	1168	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027065.12	1168	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	3.08220700148449	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTCATTCATTTCTAT	NA	False	NA	17	True	AATAAA	-17	NA	21288798	21300391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299814
transcript_63002.known	chr18	-	4923	6	FSM	ENSMUSG00000042680.9	ENSMUST00000049260.7	4923	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	4.12795348811006	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTTCAGGTCCCCACT	NA	False	NA	NA	False	AATAAA	-16	NA	21433195	21260257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_21263080_21264389_21264557_21280788_21281962_21301792_21301924_21369057_21369199_21432706
transcript_63005.known	chr18	-	4932	5	FSM	ENSMUSG00000042680.9	ENSMUST00000234115.2	4932	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.39116499156263	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	21433180	21261543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_21264557_21280788_21281962_21301792_21301924_21369057_21369199_21432706
transcript_63011.known	chr18	+	3936	8	FSM	ENSMUSG00000024277.15	ENSMUST00000170802.8	3936	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	61.3021955860756	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACTTATTCTTACGTT	1806	False	NA	18	True	AATAAA	-22	NA	23885389	24026918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_23885478_23905660_23905717_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
transcript_63012.known	chr18	+	4026	7	FSM	ENSMUSG00000024277.15	ENSMUST00000025127.5	4026	7	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_6	13.0596920161065	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTGGACTTATTCTTA	NA	False	NA	14	True	AATAAA	-18	NA	23937040	24026914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_23937279_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
transcript_63014.nnic	chr18	+	2524	4	NNC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-57	-3047	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	31.5946549628608	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATGAACTTGAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	24087691	24094683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_24087948_24089395_24089911_24090111_24090254_24093072
transcript_63016.nic	chr18	+	2657	4	NIC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-57	-3047	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	24.0554914035583	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATGAACTTGAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	24087691	24094683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_24088081_24089395_24089911_24090111_24090254_24093072
transcript_63020.nic	chr18	+	2796	4	NIC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-36	-3047	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	35.3647658929996	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATGAACTTGAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	24087712	24094683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_24088241_24089395_24089911_24090111_24090254_24093072
transcript_63022.known	chr18	+	5472	4	FSM	ENSMUSG00000024276.8	ENSMUST00000060762.6	5472	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	32.0659043568433	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGGATCTCTTTTT	NA	False	NA	22	True	GATAAA	-24	NA	24087761	24097730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24087919_24089395_24089911_24090111_24090254_24093072
transcript_63024.known	chr18	+	3040	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	18.5	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATTTCTTACTGGGACA	1059	False	NA	NA	False	AATAAA	-26	NA	24122688	24138433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24122789_24123234_24123448_24135706
transcript_63029.nnic	chr18	-	3079	4	NNC	ENSMUSG00000051469.15	novel	5732	4	NA	NA	18	1657	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	113.23427043082	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTTGGAATTGCCTTAC	NA	False	NA	NA	False	AATAAA	-28	NA	24153849	24145324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_24147743_24150340_24150489_24150724_24151157_24153768
transcript_63030.nic	chr18	-	3649	4	NIC	ENSMUSG00000051469.15	novel	5732	4	NA	NA	-43	1657	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	102.009803450453	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTTGGAATTGCCTTAC	NA	False	NA	NA	False	AATAAA	-28	NA	24153470	24145324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_24147743_24150340_24150489_24150724_24151226_24152888
transcript_63031.known	chr18	-	5732	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCATGTGTTACCTT	NA	False	NA	NA	False	AATAAA	-36	NA	24153867	24142758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
transcript_63034.nic	chr18	-	1838	4	NIC	ENSMUSG00000051469.15	novel	1513	4	NA	NA	23	-88	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	102.009803450453	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATTCACCATTATTATC	NA	False	NA	NA	False	AATAGA	-10	NA	24153404	24147069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_24147743_24150340_24150489_24150724_24151226_24152888
transcript_63036.known	chr18	-	2498	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGGGTGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	24255010	24237813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
transcript_63043.known	chr18	+	3977	13	FSM	ENSMUSG00000000420.16	ENSMUST00000000430.14	3977	13	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	166.935283534934	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACTCTGAGTAGTTGTG	NA	False	NA	16	True	ATTAAA	-27	NA	24338400	24419875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24338576_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
transcript_63050.known	chr18	+	4108	13	FSM	ENSMUSG00000000420.16	ENSMUST00000170243.8	4108	13	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_1	61.8270437052697	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATGATACTCTGAG	NA	False	NA	8	True	ATTAAA	-19	NA	24338823	24419867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24339138_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
transcript_63064.known	chr18	+	1065	5	FSM	ENSMUSG00000024273.9	ENSMUST00000097646.5	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_2	17.066048165876	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	359	False	NA	17	True	GATAAA	-14	NA	24603925	24610855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24604038_24604118_24604142_24606006_24606207_24608581_24608782_24610325
transcript_63065.known	chr18	+	1146	5	FSM	ENSMUSG00000024273.9	ENSMUST00000235029.2	1146	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	81.3910314469598	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	340	False	NA	17	True	GATAAA	-14	NA	24603906	24610855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24604038_24604118_24604204_24606006_24606207_24608581_24608782_24610325
transcript_63067.known	chr18	+	356	3	FSM	ENSMUSG00000024273.9	ENSMUST00000234303.2	356	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	102.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTCCTCAAGGAATGGG	344	False	NA	NA	False	NA	NA	NA	24603910	24610354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24604038_24608581_24608782_24610325
transcript_63071.known	chr18	-	4299	7	FSM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_1	46.8807589054993	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	24663261	24618016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
transcript_63076.nic	chr18	-	2392	6	ISM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	-58	20467	-58	0	5prime_fragment	FALSE	canonical	3	215	junction_1	43.046951111548	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTCTCATGTTTTTGA	NA	False	NA	-1	True	AATAAA	-18	NA	24663319	24638483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
transcript_63078.known	chr18	-	2950	5	FSM	ENSMUSG00000040446.5	ENSMUST00000234403.2	2950	5	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	46.5886252211846	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTCTCATGTTTTTGA	NA	False	NA	-1	True	AATAAA	-18	NA	24663115	24638483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_24640067_24640161_24641149_24641226_24641334_24642849_24642980_24662972
transcript_63085.known	chr18	+	3466	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGAGTCACCTGAGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	24737017	24772564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
transcript_63111.known	chr18	-	3882	10	FSM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_5	10.1153837126587	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTTGTTCTCTTTCTTCT	NA	False	NA	0	True	ATTAAA	-18	NA	24736874	24712937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_24714135_24715373_24715565_24717076_24717158_24718182_24718561_24722803_24722910_24729322_24729542_24730799_24730970_24732286_24732471_24733871_24734697_24736343
transcript_63113.nic	chr18	-	1912	5	ISM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	-34	16436	-34	0	5prime_fragment	FALSE	canonical	3	91	junction_4	4.63680924774785	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAACACGTACTCACACT	NA	False	NA	NA	False	GGGGCT	-18	NA	24736908	24729373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_24729542_24730799_24730970_24732286_24732471_24733871_24734697_24736343
transcript_63115.known	chr18	+	2903	15	FSM	ENSMUSG00000039616.11	ENSMUST00000068006.9	2903	15	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	5.18878303533257	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCTGCCATTATTGAG	NA	False	NA	15	True	ATTAAA	-15	NA	24786747	24834632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24787125_24793046_24793137_24797073_24797141_24799066_24799709_24803621_24803699_24807287_24807488_24809616_24809734_24812442_24812869_24816185_24816349_24819683_24819763_24821994_24822120_24825574_24825681_24828930_24829070_24832909_24833015_24834442
transcript_63118.known	chr18	+	2498	12	FSM	ENSMUSG00000039616.11	ENSMUST00000234253.2	2498	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	7.54709730200628	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGATATCTGTGTGTATA	NA	False	NA	NA	False	ATTAAA	-18	NA	24786934	24822965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24787125_24793046_24793137_24797073_24797141_24799066_24799709_24803621_24803699_24807287_24807488_24809616_24809734_24812442_24812869_24816185_24816349_24819683_24819763_24821994_24822120_24822643
transcript_63119.known	chr18	+	5409	27	FSM	ENSMUSG00000034295.11	ENSMUST00000037097.9	5409	27	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	16.7332005306815	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAGAAATGTTTATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	24842501	25266558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24842831_24887275_24887383_24903539_24903605_25030693_25030762_25036949_25037056_25102216_25102312_25118270_25118383_25123029_25123125_25127472_25127617_25134847_25135090_25153718_25153815_25155678_25156036_25161121_25161227_25189316_25189452_25193382_25193434_25199273_25199483_25218390_25218670_25223086_25223965_25234582_25234742_25243111_25243295_25245602_25245723_25246566_25246729_25248755_25248947_25253175_25253369_25258799_25258975_25263589_25263752_25265967
transcript_63121.known	chr18	+	4956	25	FSM	ENSMUSG00000034295.11	ENSMUST00000234834.2	4956	25	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_12	8.53414302799187	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAGAAATGTTTATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	24842501	25266558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_24842831_24887275_24887383_24903539_24903605_25030693_25030762_25036949_25037056_25102216_25102312_25118270_25118383_25123029_25123125_25127472_25127617_25134847_25135090_25161121_25161227_25189316_25189452_25193382_25193434_25199273_25199483_25218390_25218670_25223086_25223965_25234582_25234742_25243111_25243295_25245602_25245723_25246566_25246729_25248755_25248947_25253175_25253369_25258799_25258975_25263589_25263752_25265967
transcript_63127.nic	chr18	+	2282	16	ISM	ENSMUSG00000034295.11	ENSMUST00000234834.2	4956	25	-27	43359	-27	-40552	5prime_fragment	FALSE	canonical	3	28	junction_12	7.10555338371959	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGATGAGGAAAAAGATGA	NA	False	NA	NA	False	NA	NA	NA	24842474	25223199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_24842831_24887275_24887383_24903539_24903605_25030693_25030762_25036949_25037056_25102216_25102312_25118270_25118383_25123029_25123125_25127472_25127617_25134847_25135090_25161121_25161227_25189316_25189452_25193382_25193434_25199273_25199483_25218390_25218670_25223086
transcript_63138.known	chr18	+	5351	11	FSM	ENSMUSG00000033632.17	ENSMUST00000097643.10	5351	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_9	9.53100204595508	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTGTAATAATTTTTT	NA	False	NA	12	True	AATAAA	-21	NA	25302076	25600378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337034_25422995_25423124_25472770_25473442_25477920_25478020_25532982_25533165_25553023_25553133_25596673
transcript_63141.known	chr18	+	5257	10	FSM	ENSMUSG00000033632.17	ENSMUST00000036619.14	5257	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	14.6590889515307	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCTTACAGTGTAATAAT	NA	False	NA	7	True	AATAAA	-16	NA	25302066	25600373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337034_25422995_25423124_25472770_25473442_25532982_25533165_25553023_25553133_25596673
transcript_63143.known	chr18	+	1427	6	FSM	ENSMUSG00000033632.17	ENSMUST00000162149.2	1427	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	7.56306816047562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAACAAACACAA	NA	False	NA	NA	False	NA	NA	NA	25302076	25423965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337034_25422995
transcript_63145.nic	chr18	+	2070	5	ISM	ENSMUSG00000033632.17	ENSMUST00000162149.2	1427	6	-12	85331	-2	16344	5prime_fragment	FALSE	canonical	3	40	junction_3	4.32290411644765	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTAAGATTGGCTTTA	NA	False	NA	NA	False	AATAAA	-8	NA	25302064	25338634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917
transcript_63147.known	chr18	-	4159	7	FSM	ENSMUSG00000024269.12	ENSMUST00000115817.3	4159	7	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_5	17.5823459438406	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGGTATCTTCAACAAAAT	NA	False	NA	NA	False	AATAAA	-22	NA	25302064	25269093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_25272197_25273502_25273664_25274577_25274695_25282170_25282300_25284256_25284345_25291300_25291381_25301583
transcript_63162.nic	chr18	-	1037	6	ISM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	248912	18120	-3832	7022	internal_fragment	FALSE	canonical	3	20	junction_1	5.17687164221791	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTCTGCATCCCACT	NA	False	NA	NA	False	AGTAAA	-15	NA	25638128	25630254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
transcript_63164.known	chr18	+	3257	25	FSM	ENSMUSG00000033628.16	ENSMUST00000115812.10	3257	25	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_11	21.8495089571063	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCCTTGTTTTCCCTGTC	NA	False	NA	12	True	AGTAAA	-23	NA	30405799	30481179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_30406072_30407321_30407511_30410024_30410169_30415009_30415140_30421803_30421891_30423523_30423620_30426111_30426184_30426671_30426777_30427388_30427482_30431625_30431812_30435972_30436128_30436618_30436710_30438027_30438096_30444272_30444379_30445604_30445722_30449895_30450028_30452553_30452683_30453286_30453357_30455222_30455288_30456574_30456660_30457596_30457672_30466213_30466383_30469146_30469238_30477003_30477130_30480775
transcript_63169.known	chr18	-	4371	8	FSM	ENSMUSG00000024259.10	ENSMUST00000060396.7	4371	8	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_7	28.1852472628023	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAATATATATGTTTCT	NA	False	NA	NA	False	GATAAA	-12	NA	31742955	31713220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_31716823_31727629_31727688_31730091_31730149_31733184_31733286_31735775_31735854_31738805_31738864_31740274_31740318_31742581
transcript_63177.nnic	chr18	-	2883	7	NIC	ENSMUSG00000024259.10	novel	4371	8	NA	NA	-27	-1423	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	63.5883025581138	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGTATTTTATGGTTA	NA	False	NA	-19	True	AATAAA	-13	NA	31742991	31714643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_31716823_31727629_31727688_31730091_31730149_31735775_31735854_31738805_31738864_31740274_31740318_31742581
transcript_63184.known	chr18	+	4030	21	FSM	ENSMUSG00000024260.15	ENSMUST00000235017.2	4030	21	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_13	32.249767441022	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGAGCAGTTTGCCTCT	6805	False	NA	8	True	AATAAA	-20	NA	31767423	31856114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815059_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
transcript_63185.known	chr18	+	4015	21	FSM	ENSMUSG00000024260.15	ENSMUST00000025109.8	4015	21	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_13	29.4439722184355	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGAGCAGTTTGCCTCT	6817	False	NA	8	True	AATAAA	-20	NA	31767435	31856114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
transcript_63187.nic	chr18	+	3981	21	NIC	ENSMUSG00000024260.15	novel	400	3	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	41.2439086411557	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGAGCAGTTTGCCTCT	7493	False	NA	8	True	AATAAA	-20	NA	31768111	31856114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_31768185_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
transcript_632.nnic	chr1	+	1121	6	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	3232	190	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	18.4867520132661	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTGGAGTATTCGAACA	NA	False	NA	12	True	AATAAA	-18	NA	21326976	21335435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_21327270_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
transcript_63214.nic	chr18	+	3567	9	NIC	ENSMUSG00000041915.10	novel	3385	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_7	37.6345502829514	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCTAAACTTCACCCCT	6867	False	NA	NA	False	TTTAAA	-26	NA	31892878	31915796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913094_31913223_31913696
transcript_63216.known	chr18	+	3385	8	FSM	ENSMUSG00000041915.10	ENSMUST00000115808.4	3385	8	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	12.315578321287	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCTAAACTTCACCCCT	6921	False	NA	NA	False	TTTAAA	-26	NA	31892932	31915796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
transcript_63218.known	chr18	+	3181	8	FSM	ENSMUSG00000041915.10	ENSMUST00000234413.2	3181	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	35.5717154320045	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTGCTAAACTTCACCCC	8117	False	NA	NA	False	TTTAAA	-25	NA	31894128	31915795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_31894241_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
transcript_63220.nnic	chr18	+	3358	7	NIC	ENSMUSG00000041915.10	novel	3385	8	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	37.8832270126093	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCTAAACTTCACCCCT	6837	False	NA	NA	False	TTTAAA	-26	NA	31892848	31915796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_31893248_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
transcript_63221.known	chr18	+	2689	6	FSM	ENSMUSG00000041915.10	ENSMUST00000234500.2	2689	6	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	13.4551105532433	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAAAAAACAAAACCCA	6867	False	NA	NA	False	NA	NA	NA	31892878	31910577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039
transcript_63223.known	chr18	+	1015	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATTGTATTTATTT	NA	False	NA	21	True	AATAAA	-20	NA	31922211	31929754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
transcript_63224.known	chr18	+	706	3	FSM	ENSMUSG00000024258.5	ENSMUST00000234146.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	315.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAGAATGATGTTCAAACA	NA	False	NA	NA	False	NA	NA	NA	31922212	31929542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_31922298_31924892_31925074_31929102
transcript_63227.known	chr18	+	4575	22	FSM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	93.6872299310541	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGCACCCACTGTGCAG	5655	False	NA	39	True	AATACA	-22	NA	31937150	32040450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122_32022194_32026042_32026152_32029653_32030090_32035376_32035541_32035634_32035731_32037288_32037505_32039818
transcript_63236.nic	chr18	+	1859	15	ISM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	-70	19610	-62	1417	5prime_fragment	FALSE	canonical	3	169	junction_7	107.163712256014	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAGCAGAAATTGAGCAA	5585	False	NA	NA	False	AAGAAA	-5	NA	31937080	32020840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749
transcript_63243.known	chr18	+	2416	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_4	31.1088411870323	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCACTGTTAGAATCT	5733	False	NA	7	True	AATAAA	-18	NA	31937228	31968475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
transcript_63244.known	chr18	-	2727	1	FSM	ENSMUSG00000044982.8	ENSMUST00000054984.8	2727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGCTGGATGGTCTCTG	NA	False	NA	NA	False	TATAAA	-18	NA	32044877	32042150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_32042200_32044900
transcript_63247.known	chr18	+	1870	10	FSM	ENSMUSG00000024395.10	ENSMUST00000025254.9	1870	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.89742329120118	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGAGTGTCTGTGTGGTT	NA	False	NA	NA	False	AATGAA	-15	NA	32064377	32091672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32064604_32074792_32074953_32077191_32077259_32077488_32077610_32087488_32087639_32088310_32088462_32089310_32089404_32090005_32090055_32090290_32090367_32090895
transcript_63248.known	chr18	+	9613	14	FSM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_3	17.4029855290822	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACACTAATGCTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	32200793	32237381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32201093_32203159_32203276_32212723_32213631_32216318_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
transcript_63261.known	chr18	+	10684	17	FSM	ENSMUSG00000024383.10	ENSMUST00000096575.5	10684	17	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_15	3.53055856062465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGTATGGATATGGT	NA	False	NA	8	True	AATAAA	-24	NA	32296248	32369804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32296604_32324953_32325024_32329892_32330012_32331703_32331745_32332991_32333092_32336078_32336193_32336852_32336941_32340460_32340592_32341694_32341775_32342781_32342850_32342996_32343090_32345014_32345222_32350196_32350346_32351412_32351545_32353557_32353688_32359604_32359783_32361175
transcript_63265.known	chr18	+	2989	3	FSM	ENSMUSG00000024383.10	ENSMUST00000234576.2	2989	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	3.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTGAAAAAGGAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	32296141	32332349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32296604_32324953_32325024_32329892
transcript_63266.known	chr18	+	2708	15	FSM	ENSMUSG00000024382.14	ENSMUST00000025241.7	2708	15	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_6	14.4393524078881	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTCTCTATTTTATTG	NA	False	NA	NA	False	TATAAA	-24	NA	32373352	32403204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32373475_32373682_32373889_32376016_32376254_32377851_32377902_32378541_32378678_32378804_32378973_32379619_32379825_32381215_32381531_32387133_32387319_32390242_32390446_32394354_32394452_32397600_32397719_32398670_32398790_32400216_32400370_32402810
transcript_63267.known	chr18	+	2781	14	FSM	ENSMUSG00000024382.14	ENSMUST00000142213.8	2781	14	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	13.9589423312054	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTCTCTATTTTATTG	NA	False	NA	NA	False	TATAAA	-24	NA	32373406	32403204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32373475_32373682_32373889_32376016_32376254_32377851_32377902_32378541_32378973_32379619_32379825_32381215_32381531_32387133_32387319_32390242_32390446_32394354_32394452_32397600_32397719_32398670_32398790_32400216_32400370_32402810
transcript_63270.nic	chr18	+	2223	16	NIC	ENSMUSG00000024381.17	novel	2406	19	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	9.63788819653397	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCAGAACGAGGCGTGTC	NA	False	NA	10	True	AAAAAG	-17	NA	32510252	32568784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32547997_32548091_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32564723_32564796_32565035_32565147_32565376_32565479_32568187
transcript_63273.known	chr18	+	2091	15	FSM	ENSMUSG00000024381.17	ENSMUST00000091967.13	2091	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_10	7.8846919627173	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGAGGCGTGTCTTTCTT	NA	False	NA	16	True	AAAAAG	-23	NA	32510297	32568790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32564723_32564796_32565035_32565147_32565376_32565479_32568187
transcript_63274.nic	chr18	+	2013	14	NIC	ENSMUSG00000024381.17	novel	2406	19	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	10.0660540325881	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCAGAACGAGGCGTGTC	NA	False	NA	10	True	AAAAAG	-17	NA	32510261	32568784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32547997_32548091_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32565035_32565147_32565376_32565479_32568187
transcript_63275.nnic	chr18	+	2126	14	NIC	ENSMUSG00000024381.17	novel	2406	19	NA	NA	-98	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_11	8.76518125122715	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCAGAACGAGGCGTGTC	NA	False	NA	10	True	AAAAAG	-17	NA	32510184	32568784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32565035_32565147_32565376_32565479_32568187
transcript_63276.known	chr18	+	1530	14	FSM	ENSMUSG00000024381.17	ENSMUST00000234857.2	1530	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	8.17631157710597	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTTTCTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	32510282	32568343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32564723_32564796_32565035_32565147_32565376_32565479_32568187
transcript_63277.known	chr18	+	1886	13	FSM	ENSMUSG00000024381.17	ENSMUST00000234496.2	1886	13	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_10	7.81024967590665	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAACGAGGCGTGTCTT	NA	False	NA	12	True	AAAAAG	-19	NA	32510297	32568786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32565035_32565147_32565376_32565479_32568187
transcript_63281.known	chr18	+	2906	24	FSM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_23	153.127237455201	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9050	False	NA	14	True	ATTAAA	-7	NA	32970363	32999453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32998972_32999240
transcript_63283.known	chr18	+	4455	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	0	0	0	0	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACAAAGTTTGTCCTG	8964	False	NA	NA	False	NA	NA	NA	32970277	33000647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
transcript_63298.known	chr18	+	2330	15	FSM	ENSMUSG00000038299.17	ENSMUST00000234158.2	2330	15	0	0	0	0	multi-exon	FALSE	canonical	3	587	junction_7	49.641007159774	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAGAAAAAAATAAGAA	8992	False	NA	NA	False	NA	NA	NA	32970305	32986492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916
transcript_63300.known	chr18	+	2717	11	FSM	ENSMUSG00000038128.8	ENSMUST00000042868.6	2717	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3.0347981810987	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTTTTCCAATGGAGG	4783	False	NA	NA	False	ATTAAA	-17	NA	33072210	33319323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_33072598_33211045_33211125_33240932_33240996_33242817_33242901_33262813_33262887_33289801_33289893_33291879_33291955_33309211_33309288_33312550_33312678_33315290_33315444_33317813
transcript_63302.known	chr18	-	5097	6	FSM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	4.66476151587624	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAGATGTATATTTTTA	NA	False	NA	-80	True	AATAAA	-14	NA	33346915	33332407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_33336869_33338103_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
transcript_63304.known	chr18	-	941	6	FSM	ENSMUSG00000024378.10	ENSMUST00000119991.8	941	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	21.0959711793508	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTAAAAGTCTTATTTG	NA	False	NA	NA	False	ATTAAA	-33	NA	33346819	33336457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_33336869_33338273_33338379_33339172_33339300_33341229_33341280_33342095_33342211_33346686
transcript_63306.known	chr18	-	648	5	FSM	ENSMUSG00000024378.10	ENSMUST00000118990.2	648	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	19.6643713349804	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCAAGGCATAACATGTTC	NA	False	NA	NA	False	NA	NA	NA	33346825	33336651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_33336869_33339172_33339300_33341229_33341280_33342095_33342211_33346686
transcript_63308.known	chr18	-	2185	5	FSM	ENSMUSG00000042834.16	ENSMUST00000168890.2	2185	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	6.79613860953409	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCTTTGGCTCATTATT	NA	False	NA	-4	True	AATAAA	-20	NA	33597082	33570071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430_33596473_33596905
transcript_63311.known	chr18	-	659	4	FSM	ENSMUSG00000042834.16	ENSMUST00000051087.16	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	5.90668171555645	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGTATGGGGTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	33596792	33571740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430
transcript_63312.known	chr18	+	430	3	FSM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	24	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACGTGTATGTTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	33927944	33929039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_33928178_33928435_33928499_33928905
transcript_63317.known	chr18	-	3566	24	FSM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_23	34.3352756377329	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGGTCTCTTTACTG	NA	False	NA	0	True	AATAAA	-13	NA	34139972	33929379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
transcript_63321.nic	chr18	-	3032	23	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	248	632	248	-42	3prime_fragment	FALSE	canonical	3	125	junction_9	28.0317116763164	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGTGTCCTTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	34139724	33930011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037
transcript_63326.nnic	chr18	-	2408	22	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-29051	-42	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_21	43.4022999066663	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGTGTCCTTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	34054078	33930011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34053910
transcript_6333.known	chr1	-	2706	2	FSM	ENSMUSG00000053483.16	ENSMUST00000153164.2	2706	2	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	171115532	171112035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171114544_171115334
transcript_63336.nic	chr18	-	1958	15	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	-275	32469	-228	-26256	5prime_fragment	FALSE	canonical	3	87	junction_14	33.0238009407068	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGAAAACAGCCCTGACC	NA	False	NA	NA	False	AAGAAA	-6	NA	34140247	33961848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
transcript_6334.known	chr1	-	822	7	FSM	ENSMUSG00000062963.11	ENSMUST00000144576.8	822	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	228.930423685645	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATAGGCGGTTTGTATCC	7366	False	NA	NA	False	AATGAA	-32	NA	171122514	171116266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117427_171117521_171117721_171117790_171122206_171122401_171122493
transcript_63340.nic	chr18	-	2101	14	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	-434	36269	-387	-30056	5prime_fragment	FALSE	canonical	3	87	junction_13	33.8312904426915	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGTGCGCCGTTGTA	NA	False	NA	NA	False	AATGAA	-38	NA	34140406	33965648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
transcript_6335.known	chr1	-	1007	7	FSM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_6	130.826539101718	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTCATTGATG	7283	False	NA	0	True	AATAAA	-18	NA	171122597	171116135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
transcript_63353.nic	chr18	-	1200	5	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	-382	90031	-335	-7420	5prime_fragment	FALSE	canonical	3	87	junction_4	39.6011363473323	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCAGGTATAGTATTGAC	NA	False	NA	NA	False	ATTAAA	-38	NA	34140354	34019410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
transcript_63355.nnic	chr18	-	3393	3	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-348	-83772	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	38.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTTTTGGAGATTTTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	34140367	34135618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_34138028_34139037_34139476_34139821
transcript_63361.known	chr18	+	12346	16	FSM	ENSMUSG00000005871.16	ENSMUST00000115781.10	12346	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	37.9504940679301	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTAGTGAAGGTTGCCAT	NA	False	NA	3	True	ATTAAA	-14	NA	34354036	34455242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34415059_34415063_34429083_34429183_34431475_34431855_34433018_34433115_34437635_34437776_34438618_34438697_34439315_34439433_34443745_34443961_34445057
transcript_63362.known	chr18	+	12811	16	FSM	ENSMUSG00000005871.16	ENSMUST00000079362.13	12811	16	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	20.0838243370131	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAAACTAAAGTAACTA	NA	False	NA	NA	False	NA	NA	NA	34354036	34455605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34422890_34422996_34429083_34429183_34431475_34431855_34433018_34433115_34437635_34437776_34438618_34438697_34439315_34439433_34443745_34443961_34445057
transcript_63367.nic	chr18	+	889	5	ISM	ENSMUSG00000005871.16	ENSMUST00000170023.8	1825	11	-111	27684	-22	-4073	5prime_fragment	FALSE	canonical	3	88	junction_2	8.5146931829632	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATAGCCTGCCTTTA	NA	False	NA	NA	False	NA	NA	NA	34353954	34405571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_34354330_34394057_34394211_34401350_34401433_34402108_34402308_34405491
transcript_63368.known	chr18	+	956	6	FSM	ENSMUSG00000014504.17	ENSMUST00000142010.2	956	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	757.224141189384	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTCATCTTTAAG	NA	False	NA	-42	True	AATAAA	-12	NA	34464228	34469606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34464313_34464802_34464879_34465958_34466116_34467345_34467418_34467509_34467622_34469151
transcript_63370.known	chr18	+	876	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_3	511.998291012773	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGTAGCTTTCACTTAG	NA	False	NA	4	True	AATAAA	-14	NA	34464197	34469652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
transcript_63373.known	chr18	+	613	4	FSM	ENSMUSG00000014504.17	ENSMUST00000119329.8	613	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	851.206594585983	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTGTGTGGAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	34464210	34469474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34464313_34464802_34464879_34467509_34467622_34469151
transcript_63375.known	chr18	-	2852	5	FSM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	0	0	0	0	multi-exon	FALSE	canonical	3	477	junction_1	38.3495436739474	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTAAAATGTTGTTTT	5561	False	NA	-7	True	AATAAA	-27	NA	34506422	34477937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34480222_34482687_34482857_34490144_34490284_34505457_34505552_34506256
transcript_63381.known	chr18	-	3344	21	FSM	ENSMUSG00000036501.8	ENSMUST00000040506.8	3344	21	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_18	10.452152888281	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTGTTTTTTCTTTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	34639876	34575403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716_34590928_34595113_34595262_34596013_34596063_34598208_34598274_34606602_34606739_34620031_34620193_34627209_34627352_34627651_34627830_34630386_34630600_34631020_34631213_34632738_34632906_34639581
transcript_63388.known	chr18	-	3757	3	FSM	ENSMUSG00000036501.8	ENSMUST00000236598.2	3757	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	7.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGGATGTGGGTGG	NA	False	NA	NA	False	NA	NA	NA	34639884	34627925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34631213_34632738_34632906_34639581
transcript_6339.nic	chr1	-	1722	7	NIC	ENSMUSG00000013997.11	novel	1335	7	NA	NA	-9	0	intron_retention	FALSE	canonical	3	10	junction_6	48.6646689087679	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	869	False	NA	-10	True	AATATA	-8	NA	171173223	171169811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171172758
transcript_63392.known	chr18	-	3005	21	FSM	ENSMUSG00000003778.15	ENSMUST00000097626.10	3005	21	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_13	121.034540524596	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGTGTATATATAACA	NA	False	NA	-34	True	NA	NA	NA	34757654	34732911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
transcript_63393.known	chr18	-	3869	21	FSM	ENSMUSG00000003778.15	ENSMUST00000115765.2	3869	21	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_20	102.255794456842	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAAAGAATAA	NA	False	NA	NA	False	NA	NA	NA	34757654	34734227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
transcript_63394.known	chr18	-	1702	2	FSM	ENSMUSG00000003778.15	ENSMUST00000127159.2	1702	2	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-14	NA	34757654	34754966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34756605_34757590
transcript_63395.known	chr18	-	4335	20	FSM	ENSMUSG00000003778.15	ENSMUST00000152612.8	4335	20	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_7	140.778976490123	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTCTGGCCTTTGGTGT	NA	False	NA	-5	True	NA	NA	NA	34757606	34732882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
transcript_63396.known	chr18	-	3325	7	FSM	ENSMUSG00000003778.15	ENSMUST00000153569.8	3325	7	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_6	64.0616022972333	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAAAAACAGG	NA	False	NA	NA	False	NA	NA	NA	34757654	34743314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
transcript_634.nic	chr1	+	983	5	ISM	ENSMUSG00000025934.16	ENSMUST00000121676.8	894	8	16569	-190	3655	190	3prime_fragment	FALSE	canonical	3	69	junction_1	2	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTGGAGTATTCGAACA	NA	False	NA	12	True	AATAAA	-18	NA	21327399	21335435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
transcript_6341.known	chr1	-	3041	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111289.8	3041	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	46.1904270986484	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCTTGACTTGGTTCA	878	False	NA	2	True	ATTAAA	-23	NA	171173214	171168138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173103
transcript_63415.known	chr18	+	3674	19	FSM	ENSMUSG00000003779.17	ENSMUST00000237407.2	3674	19	0	0	0	0	multi-exon	FALSE	canonical	3	938	junction_13	99.0044268869321	4383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTCCACGAAGTTCTC	5977	False	NA	NA	False	AGTAAA	-10	NA	34757787	34766330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
transcript_6342.known	chr1	-	1335	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_6	27.0025718939676	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	879	False	NA	-10	True	AATATA	-8	NA	171173213	171169811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173135
transcript_63425.known	chr18	+	3146	19	FSM	ENSMUSG00000003779.17	ENSMUST00000167161.9	3146	19	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_1	232.664995218447	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGGGACAGAAAATTGATA	5855	False	NA	53	True	TATAAA	-2	NA	34757665	34765888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34757906_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
transcript_63426.known	chr18	+	3107	19	FSM	ENSMUSG00000003779.17	ENSMUST00000166044.3	3107	19	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	232.455445087047	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6275	False	NA	23	True	AATAAA	-20	NA	34758085	34765858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34758317_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
transcript_6344.known	chr1	+	2322	6	FSM	ENSMUSG00000013973.13	ENSMUST00000111299.8	2322	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	95.9804146688271	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCCCACTTTTCTGA	1446	False	NA	NA	False	AATAAA	-11	NA	171156966	171169893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171157095_171158801_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_6347.nic	chr1	+	1570	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGGGACTCTGAAGTGT	1636	False	NA	2	True	AGTAAA	-13	NA	171157156	171169184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_6348.nic	chr1	+	1636	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1636	False	NA	18	True	NA	NA	NA	171157156	171169250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_63488.known	chr18	-	2084	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTACTGTTCTTTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	34784788	34764003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
transcript_63489.known	chr18	-	4133	16	FSM	ENSMUSG00000024370.18	ENSMUST00000133181.2	4133	16	0	0	0	0	multi-exon	FALSE	canonical	3	906	junction_9	78.8679909722569	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAAACGCCTTATT	NA	False	NA	NA	False	AATAAA	-41	NA	34784788	34764735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
transcript_6349.nic	chr1	+	2285	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCACTTTTCTGAAACTGA	1636	False	NA	NA	False	AATAAA	-17	NA	171157156	171169899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_63490.known	chr18	-	1997	8	FSM	ENSMUSG00000024366.9	ENSMUST00000025224.9	1997	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.903507902905251	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTTCCTAATTTTCTTA	9350	False	NA	NA	False	ATTAAA	-20	NA	34853440	34822950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34823677_34823868_34823958_34824317_34824453_34824601_34824706_34828616_34828930_34837533_34837627_34844168_34844457_34853191
transcript_63495.known	chr18	-	1945	15	FSM	ENSMUSG00000044201.11	ENSMUST00000060710.9	1945	15	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_14	20.2922524674833	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2792	False	NA	-15	True	AATAAA	-22	NA	34884586	34866045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
transcript_63502.nic	chr18	-	2157	14	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-62	0	intron_retention	FALSE	canonical	3	155	junction_13	20.7081723569914	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2730	False	NA	-15	True	AATAAA	-22	NA	34884648	34866045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884265_34884366
transcript_63506.nic	chr18	-	2525	14	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-62	0	intron_retention	FALSE	canonical	3	155	junction_13	21.055013879536	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2730	False	NA	-15	True	AATAAA	-22	NA	34884648	34866045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_34866447_34866629_34866742_34867771_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
transcript_63515.nic	chr18	-	2399	12	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-62	16	intron_retention	FALSE	canonical	3	155	junction_11	19.0015223400566	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCAGACATGGTGGTCCA	2730	False	NA	NA	False	NA	NA	NA	34884648	34867384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
transcript_63528.known	chr18	+	4475	5	FSM	ENSMUSG00000034300.18	ENSMUST00000049281.12	4475	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	15.2868407462104	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTGTACGATAGTGTCT	4437	False	NA	26	True	AATAAA	-33	NA	34891958	34906813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34892198_34895547_34895778_34896125_34896184_34901220_34902006_34903650
transcript_63529.known	chr18	+	4256	5	FSM	ENSMUSG00000034300.18	ENSMUST00000097622.4	4256	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	5.02493781056044	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATCCATTTTCCCAAGC	5087	False	NA	4	True	AATAAA	-11	NA	34892608	34906791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34892651_34895547_34895778_34896125_34896184_34901220_34902006_34903650
transcript_63531.known	chr18	+	4200	4	FSM	ENSMUSG00000034300.18	ENSMUST00000235929.2	4200	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.8588914885357	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTGTACGATAGTGTCT	5104	False	NA	26	True	AATAAA	-33	NA	34892625	34906813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34892651_34895547_34895778_34901223_34902006_34903650
transcript_63538.known	chr18	+	6363	24	FSM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_7	44.6966672190611	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTTGATCTCCAATAT	NA	False	NA	NA	False	NA	NA	NA	34910099	34971713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502_34937103_34941293_34942543_34943311_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
transcript_6355.known	chr1	+	1618	5	FSM	ENSMUSG00000013973.13	ENSMUST00000064950.11	1618	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	61.0184398358398	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1455	False	NA	18	True	NA	NA	NA	171156975	171169250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171157095_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_63551.nic	chr18	+	2210	8	ISM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	-54	29731	-54	4296	5prime_fragment	FALSE	canonical	3	208	junction_7	25.431781498827	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTCTTTATTACAACTG	NA	False	NA	NA	False	AAGAAA	-3	NA	34910045	34941982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502_34937103_34941293
transcript_63554.known	chr18	+	2032	7	FSM	ENSMUSG00000038773.12	ENSMUST00000224715.2	2032	7	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_6	14.229273425661	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTAAGTCGTATTTTTCT	NA	False	NA	27	True	AATAAA	-36	NA	34910118	34937686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34910379_34926056_34926225_34927502_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502
transcript_63561.known	chr18	+	1926	8	FSM	ENSMUSG00000038555.8	ENSMUST00000043484.8	1926	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.56347977784662	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGATCTCTGCGTTGTT	NA	False	NA	16	True	AATAAA	-22	NA	34973641	34980516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_34973841_34975506_34975580_34975909_34975987_34978304_34978426_34978627_34978742_34978997_34979146_34979241_34979373_34979453
transcript_63572.known	chr18	-	3709	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	35065060	35035837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
transcript_6358.known	chr1	+	849	5	FSM	ENSMUSG00000013973.13	ENSMUST00000129116.8	849	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	84.8038177206663	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCAAGTCCCGGGACCT	1657	False	NA	NA	False	NA	NA	NA	171157177	171168517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171157261_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_63589.known	chr18	-	3049	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	0	0	0	0	multi-exon	TRUE	canonical	3	5978	junction_5	267.479905787332	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCGTTGTAATCTTCT	199	False	NA	-19	True	CATAAA	-5	NA	35087410	35070466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
transcript_63597.known	chr18	+	3733	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	0	0	0	0	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCAGAAGTCGTTCTT	NA	False	NA	33	True	AATAAA	-21	NA	35251911	35387832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
transcript_63612.known	chr18	+	1453	10	FSM	ENSMUSG00000037815.8	ENSMUST00000236037.2	1453	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	724.84569664903	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAGGAATATGCCCAAGT	NA	False	NA	30	True	NA	NA	NA	35251965	35356577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35252035_35271037_35271175_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475
transcript_63613.nic	chr18	+	1404	9	ISM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	-34	31255	-34	0	5prime_fragment	FALSE	canonical	3	1595	junction_4	176.232091288732	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAGGAATATGCCCAAGT	NA	False	NA	30	True	NA	NA	NA	35251877	35356577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475
transcript_63615.known	chr18	+	1656	7	FSM	ENSMUSG00000037815.8	ENSMUST00000236969.2	1656	7	0	0	0	0	multi-exon	FALSE	canonical	3	1595	junction_4	198.935221170667	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAGTATTATAAAATTT	NA	False	NA	NA	False	AAAAAG	-21	NA	35251939	35316103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402
transcript_63619.known	chr18	+	1124	5	FSM	ENSMUSG00000037815.8	ENSMUST00000236571.2	1124	5	0	0	0	0	multi-exon	FALSE	canonical	3	1595	junction_4	219.261687259767	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAGAAATATCCTTTCAA	NA	False	NA	NA	False	TTTAAA	-5	NA	35251935	35308704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149
transcript_63622.known	chr18	-	1703	10	FSM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_3	10.8423039781937	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631982	35399448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
transcript_63628.nnic	chr18	-	876	6	NNC	ENSMUSG00000024357.11	novel	342	3	NA	NA	-16	8117	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	60.4072843289615	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCCGAATCTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	35631998	35473579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_35473827_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
transcript_63629.nic	chr18	-	525	4	ISM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	-16	82248	-16	0	5prime_fragment	FALSE	canonical	3	136	junction_3	8.9566858950296	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTAGTATATTGTTCTT	NA	False	NA	NA	False	TTTAAA	-8	NA	35631998	35481696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_35481814_35551109_35551249_35571319_35571434_35631843
transcript_63630.known	chr18	-	538	4	FSM	ENSMUSG00000024357.11	ENSMUST00000236007.2	538	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	61.0482504981829	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGGAAGTAATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	35631915	35563096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35563361_35565516_35565605_35571319_35571434_35631843
transcript_6364.known	chr1	+	885	4	FSM	ENSMUSG00000006412.11	ENSMUST00000006579.5	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	957.822994550083	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTTAATGGCTCACTAT	NA	False	NA	NA	False	NA	NA	NA	171173297	171185970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185355
transcript_63642.known	chr18	+	1515	15	FSM	ENSMUSG00000117694.2	ENSMUST00000237592.2	1515	15	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	401.861383350741	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGTGCCGAATCTGCTGA	NA	False	NA	NA	False	ATTAAA	-19	NA	35686462	35720761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683
transcript_63644.known	chr18	+	6262	15	FSM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_2	183.6430655108	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	AAGAAA	-5	NA	35695210	35726888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_6365.known	chr1	+	1735	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	0	0	0	0	multi-exon	FALSE	canonical	3	1860	junction_3	112.860779527503	1076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTCTATTTTTTGT	NA	False	NA	5	True	NA	NA	NA	171173237	171186822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
transcript_63650.known	chr18	+	3107	15	FSM	ENSMUSG00000037236.17	ENSMUST00000235199.2	3107	15	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	318.569899099467	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTAGTTTGAGGCTTCAA	NA	False	NA	-59	True	AATGAA	-3	NA	35695497	35723791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35695575_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_63658.known	chr18	+	1854	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237061.2	1854	14	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	296.625019792437	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTACACATACGGTTA	NA	False	NA	NA	False	AATAGA	-27	NA	35695271	35723634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_63663.known	chr18	+	1846	14	FSM	ENSMUSG00000037236.17	ENSMUST00000236507.2	1846	14	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	325.222090707295	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTTAATGAAAATGTTT	NA	False	NA	NA	False	AATAGA	-44	NA	35695263	35723651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35695313_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_63665.known	chr18	+	1951	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237365.2	1951	14	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	322.705042381891	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGTTTTAGTGGAAAAT	NA	False	NA	NA	False	AATACA	-29	NA	35695351	35723582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35695575_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_63666.nic	chr18	+	2604	13	ISM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	-65	6127	-45	-2756	5prime_fragment	FALSE	canonical	3	826	junction_2	89.9958332368783	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGTGCCGAATCTGCTGA	NA	False	NA	NA	False	ATTAAA	-19	NA	35695145	35720761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683
transcript_6367.known	chr1	-	1558	4	FSM	ENSMUSG00000045259.5	ENSMUST00000061878.5	1558	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGAACTGAGGTTCCTTT	7871	False	NA	NA	False	AATAAA	-26	NA	171188366	171186013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171186549_171187022_171187222_171187309_171187470_171187702
transcript_63670.known	chr18	+	2638	13	FSM	ENSMUSG00000037236.17	ENSMUST00000235960.2	2638	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	348.249990029513	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTAGGTCATGTTGAT	NA	False	NA	32	True	AATAAA	-8	NA	35695263	35724472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35695346_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_63675.nic	chr18	+	2454	12	ISM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	7	8954	7	4155	5prime_fragment	FALSE	canonical	3	826	junction_2	93.9974502907234	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGTTTTATATTGGTAT	NA	False	NA	NA	False	AAAAAG	-42	NA	35695217	35717934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567
transcript_63685.nic	chr18	+	2083	11	ISM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	0	9925	0	3184	5prime_fragment	FALSE	canonical	3	826	junction_2	98.3516649579457	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAATCCCGGTAATTTGA	NA	False	NA	NA	False	NA	NA	NA	35695210	35716963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930
transcript_63696.nic	chr18	+	1814	8	ISM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	-65	12114	-45	995	5prime_fragment	FALSE	canonical	3	826	junction_2	76.546371166604	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTAGCCTTTCATTTGT	NA	False	NA	NA	False	AATAAA	-1	NA	35695145	35714774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649
transcript_6370.known	chr1	+	4494	12	FSM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	11.0123897167112	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTATGTACTTTGTCTT	2492	False	NA	NA	False	AATAAA	-28	NA	171216521	171237808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171216932_171225042_171225146_171228123_171228269_171229492_171229576_171229724_171229833_171230780_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377_171232747_171234925_171235204_171235295
transcript_63705.known	chr18	+	1190	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTGTGTAGTTGGTC	NA	False	NA	NA	False	NA	NA	NA	35686423	35691369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
transcript_63707.known	chr18	+	1567	3	FSM	ENSMUSG00000037236.17	ENSMUST00000235769.2	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_2	10	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAGTTAATACATGCTAT	NA	False	NA	NA	False	AAGAAA	-30	NA	35695190	35710929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35695346_35704895_35705989_35710610
transcript_63708.known	chr18	+	1586	2	FSM	ENSMUSG00000117869.2	ENSMUST00000235277.2	1586	2	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTTATTTTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	35686474	35689017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35686523_35687479
transcript_63712.known	chr18	+	1355	1	FSM	ENSMUSG00000117869.2	ENSMUST00000235956.2	1355	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGTCAAGATTT	NA	False	NA	NA	False	AATAAA	-5	NA	35686462	35687817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35686500_35687800
transcript_63713.known	chr18	+	196	1	FSM	ENSMUSG00000065649.3	ENSMUST00000083715.3	196	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCATGTTAAAAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	35690084	35690280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35690100_35690300
transcript_63718.known	chr18	+	857	5	FSM	ENSMUSG00000037058.17	ENSMUST00000236020.2	857	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1458.22751997073	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAATTAAATCACCTCC	4664	False	NA	-19	True	NA	NA	NA	35731693	35749572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35731813_35733097_35733171_35743923_35744088_35746375_35746556_35749251
transcript_63721.known	chr18	+	1522	5	FSM	ENSMUSG00000037058.17	ENSMUST00000235400.2	1522	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	1449.29120607282	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGGTGCTTGTGTTAT	4672	False	NA	19	True	AATAAA	-13	NA	35731701	35750236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35731813_35741790_35741873_35743923_35744088_35746375_35746556_35749251
transcript_63724.known	chr18	+	1475	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	0	0	0	0	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4640	False	NA	22	True	AATAAA	-16	NA	35731669	35750239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
transcript_63728.known	chr18	+	683	4	FSM	ENSMUSG00000037058.17	ENSMUST00000236868.2	683	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	1322.78519294202	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATGCTTAATAAAAGTGC	4719	False	NA	-21	True	NA	NA	NA	35731748	35749442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35731897_35743923_35744088_35746375_35746556_35749251
transcript_63733.known	chr18	-	702	6	FSM	ENSMUSG00000024352.13	ENSMUST00000025209.12	702	6	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_2	20.7980768341691	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAATGCCCAACCTCTC	NA	False	NA	-7	True	AATAAA	-26	NA	35795239	35789741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35793844_35793911_35795064
transcript_63736.known	chr18	-	904	4	FSM	ENSMUSG00000024353.6	ENSMUST00000025211.6	904	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	0.471404520791032	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGTGTTGGCTGTTGAA	NA	False	NA	-1	True	AATAAA	-16	NA	35782420	35780319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35780780_35780876_35780988_35781311_35781437_35782212
transcript_63737.known	chr18	-	710	4	FSM	ENSMUSG00000024352.13	ENSMUST00000096573.4	710	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	13.2748718344933	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTGTTTTATCCCATTT	NA	False	NA	-1	True	NA	NA	NA	35795239	35793068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35793407_35793496_35793628_35793844_35793911_35795064
transcript_63738.known	chr18	-	549	3	FSM	ENSMUSG00000024352.13	ENSMUST00000236971.2	549	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	85	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCCCATTTTTCTTGAAA	NA	False	NA	-41	True	NA	NA	NA	35795184	35793108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35793407_35793496_35793628_35795064
transcript_63739.known	chr18	-	4888	1	FSM	ENSMUSG00000073600.6	ENSMUST00000190196.5	4888	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTGTGTAGTCCTAATT	NA	False	NA	NA	False	AATAAA	-39	NA	35788291	35783403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35783400_35788300
transcript_6374.nic	chr1	+	3697	7	ISM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	14207	0	14162	0	3prime_fragment	FALSE	canonical	0	0	junction_5	9.51606828241346	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTATGTACTTTGTCTT	852	False	NA	NA	False	AATAAA	-28	NA	171230728	171237808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377_171232747_171234925_171235204_171235295
transcript_63740.nic	chr18	-	5256	9	NIC	ENSMUSG00000024350.7	novel	5146	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	22.8250821466211	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGACTTTATGACTCCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	35836190	35804155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35835464_35835559_35836078
transcript_63741.nic	chr18	-	1328	9	NIC	ENSMUSG00000024350.7	novel	5146	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	22.8250821466211	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTTACTCTCTGCTG	NA	False	NA	-10	True	AATACA	-14	NA	35836190	35808083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35835464_35835559_35836078
transcript_63743.known	chr18	-	1055	9	FSM	ENSMUSG00000073599.11	ENSMUST00000133064.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATTTCTTTTAAGGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	35855409	35846138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35846488_35846693_35846791_35848231_35848269_35848475_35848575_35849005_35849129_35849805_35849866_35850205_35850344_35851400_35851440_35855296
transcript_63744.known	chr18	-	5146	8	FSM	ENSMUSG00000024350.7	ENSMUST00000025208.7	5146	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	8.80630571852711	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGACTTTATGACTCCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	35836174	35804155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35836078
transcript_63749.known	chr18	-	2086	8	FSM	ENSMUSG00000024349.11	ENSMUST00000235495.2	2086	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	4.50396650583841	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGCCTAGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	35873515	35866731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872151_35872403_35872631_35872977_35873068_35873359
transcript_63750.known	chr18	-	2299	8	FSM	ENSMUSG00000024349.11	ENSMUST00000115728.5	2299	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.35638289270592	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGCCTAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	35873607	35866733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35872977_35873068_35873359
transcript_63753.known	chr18	+	2480	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTGTCTCATCTCTCA	NA	False	NA	17	True	AATAAA	-28	NA	35904610	35940221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
transcript_63765.known	chr18	+	884	6	FSM	ENSMUSG00000091896.9	ENSMUST00000235516.2	884	6	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_2	80.5729483139347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCAGTGCTGCGTGTTG	NA	False	NA	71	True	NA	NA	NA	35904814	35938749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933269_35934326_35934421_35938570
transcript_63786.nic	chr18	+	1932	3	NIC	ENSMUSG00000046668.10	novel	2302	3	NA	NA	-148	-771	combination_of_known_junctions	FALSE	canonical	3	329	junction_2	30	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACTGCTTTTTCAGAA	NA	False	NA	NA	False	NA	NA	NA	35962692	35993970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_35963293_35991445_35992510_35993702
transcript_63787.nic	chr18	+	2830	3	NIC	ENSMUSG00000046668.10	novel	2302	3	NA	NA	116	0	combination_of_known_junctions	FALSE	canonical	3	329	junction_2	30	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35962565	35994741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_35963293_35991445_35992510_35993702
transcript_63791.known	chr18	+	2302	3	FSM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	140.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35962840	35994741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35963040_35991445_35992510_35993702
transcript_63799.nic	chr18	+	1483	3	NIC	ENSMUSG00000046668.10	novel	857	2	NA	NA	-65	-771	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	135.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACTGCTTTTTCAGAA	NA	False	NA	NA	False	NA	NA	NA	35963301	35993970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_35963453_35991445_35992510_35993702
transcript_638.nnic	chr1	+	882	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	232	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGTAGGGGAAGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	21323508	21326768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr1_+_21323669_21324392_21324563_21326216
transcript_6380.nic	chr1	+	3261	11	Fusion	ENSMUSG00000103711.2_ENSMUSG00000026641.14	novel	1115	10	NA	NA	-6	0	intron_retention	FALSE	canonical	3	27	junction_10	65.466709097067	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTTGTATTTAATTT	6731	False	NA	NA	False	AATAAA	-17	NA	171238874	171247919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599_171247669_171247758
transcript_63800.nic	chr18	+	2254	3	NIC	ENSMUSG00000046668.10	novel	857	2	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	135.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35963301	35994741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_35963453_35991445_35992510_35993702
transcript_63803.known	chr18	+	651	2	FSM	ENSMUSG00000046668.10	ENSMUST00000235161.2	651	2	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAGCTGACGCTGCAGC	NA	False	NA	NA	False	NA	NA	NA	35962449	35992055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35962491_35991445
transcript_63804.known	chr18	+	1169	2	FSM	ENSMUSG00000046668.10	ENSMUST00000237291.2	1169	2	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_1	0	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCTGGCTGAGAGTGCA	NA	False	NA	NA	False	NA	NA	NA	35962945	35992267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35963293_35991445
transcript_63806.nic	chr18	+	2784	2	ISM	ENSMUSG00000046668.10	ENSMUST00000060722.8	2302	3	-60	771	-60	-771	intron_retention	FALSE	canonical	3	48	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACTGCTTTTTCAGAA	NA	False	NA	NA	False	NA	NA	NA	35962780	35993970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_35963040_35991445
transcript_63808.known	chr18	+	857	2	FSM	ENSMUSG00000046668.10	ENSMUST00000235169.2	857	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCGCTTTCCCCATCAAT	NA	False	NA	NA	False	NA	NA	NA	35963366	35992216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_35963453_35991445
transcript_6381.nic	chr1	+	3292	11	Fusion	ENSMUSG00000103711.2_ENSMUSG00000026641.14	novel	2167	10	NA	NA	-6	0	intron_retention	FALSE	canonical	3	27	junction_10	51.4105047631318	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTTGTATTTAATTT	6731	False	NA	NA	False	AATAAA	-17	NA	171238874	171247919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599_171247669_171247758
transcript_63810.known	chr18	+	5957	2	FSM	ENSMUSG00000043991.6	ENSMUST00000051301.6	5957	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTGTTTTCATTTCTTG	NA	False	NA	NA	False	AATAAA	-26	NA	36414149	36425588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36414603_36420084
transcript_63812.known	chr18	+	2839	1	FSM	ENSMUSG00000110185.3	ENSMUST00000210490.3	2839	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATCATCAGTCTTTGTTT	NA	False	NA	NA	False	AATAAA	-30	NA	36431731	36434570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36431700_36434600
transcript_63814.known	chr18	+	1101	4	FSM	ENSMUSG00000046727.14	ENSMUST00000235864.2	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	406.851597295896	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTACTATCCACTCACAAA	NA	False	NA	134	True	NA	NA	NA	36481711	36536150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36481870_36483746_36483862_36499567_36499795_36535549
transcript_63815.known	chr18	+	445	3	FSM	ENSMUSG00000046727.14	ENSMUST00000152804.9	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	356.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGACCAATTCTTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	36481826	36526423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36481870_36499567_36499795_36526248
transcript_63816.known	chr18	+	831	3	FSM	ENSMUSG00000046727.14	ENSMUST00000050584.10	831	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_1	90	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGACTTACTCCAGGT	NA	False	NA	17	True	AATAAA	-17	NA	36481749	36536033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36481870_36499567_36499795_36535549
transcript_63818.known	chr18	-	1109	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	0	0	0	0	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTTGCCTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	36587577	36536728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
transcript_6382.nic	chr1	+	3356	11	Fusion	ENSMUSG00000103711.2_ENSMUSG00000026641.14	novel	2167	10	NA	NA	-6	0	intron_retention	FALSE	canonical	3	21	junction_1	69.6218356552023	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTTGTATTTAATTT	6731	False	NA	NA	False	AATAAA	-17	NA	171238874	171247919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr1_+_171239009_171241940_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599_171247669_171247758
transcript_63823.known	chr18	-	1024	3	FSM	ENSMUSG00000024346.7	ENSMUST00000237792.2	1024	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	1494	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTTGCCTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	36587577	36536728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36537514_36584132_36584300_36587505
transcript_63825.nic	chr18	-	306	3	ISM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	-11	28659	-11	-28130	5prime_fragment	FALSE	canonical	3	3024	junction_1	14	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAGCAGAAGAAAAAATTAAA	NA	False	NA	NA	False	AAAACA	-6	NA	36587588	36565387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_36565444_36584132_36584300_36587505
transcript_63826.known	chr18	-	2375	6	FSM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	10.9068785635488	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTTCATTTTTGGTT	NA	False	NA	-10	True	AATAAA	-22	NA	36648858	36637979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36639418_36639687_36639779_36640501_36640658_36645609_36645788_36648139_36648314_36648520
transcript_63829.nic	chr18	-	601	3	ISM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	-18	7737	-18	15	5prime_fragment	FALSE	canonical	3	29	junction_1	8.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGGGGTTAGGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	36648876	36645716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_36645788_36648139_36648314_36648520
transcript_6383.known	chr1	+	1115	10	FSM	ENSMUSG00000026641.14	ENSMUST00000001284.13	1115	10	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	49.4805111903093	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGGGACTCAGGGGCTT	6737	False	NA	NA	False	NA	NA	NA	171238880	171245689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
transcript_63830.known	chr18	-	2890	2	FSM	ENSMUSG00000024486.7	ENSMUST00000236520.2	2890	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAGAAGAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	36648828	36645731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36648314_36648520
transcript_6385.known	chr1	+	2167	10	FSM	ENSMUSG00000026641.14	ENSMUST00000161241.8	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	10.3363197596069	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCCCCTGGATGTGAGG	6737	False	NA	NA	False	NA	NA	NA	171238880	171246710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
transcript_63859.nic	chr18	+	2322	15	NIC	ENSMUSG00000024483.20	novel	1005	6	NA	NA	-16	151	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	32.5417314492374	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACTGAAAGAACTACAGAAG	NA	False	NA	58	True	NA	NA	NA	36693023	36757816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_36693155_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36757561
transcript_63865.known	chr18	+	772	1	FSM	ENSMUSG00000085172.2	ENSMUST00000153606.2	772	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAGATAGAATCACGGA	7863	False	NA	NA	False	NA	NA	NA	36743010	36743782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36743000_36743800
transcript_63866.known	chr18	+	2235	8	FSM	ENSMUSG00000117942.2	ENSMUST00000140061.8	2235	8	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_2	28.281384950067	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTCCATTGTTGTCC	NA	False	NA	33	True	AGTAAA	-15	NA	36780912	36798970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
transcript_63867.known	chr18	-	760	4	FSM	ENSMUSG00000006050.13	ENSMUST00000236330.2	760	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	696.127542592272	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATTCTGATGTCAGA	NA	False	NA	-12	True	NA	NA	NA	36803343	36800301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803300
transcript_63872.known	chr18	-	2067	13	FSM	ENSMUSG00000117679.2	ENSMUST00000001415.9	2067	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	18.7888486431003	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	-2	True	AATAAA	-19	NA	36812419	36804206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36809676_36809917_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
transcript_63873.known	chr18	-	2258	12	FSM	ENSMUSG00000117679.2	ENSMUST00000236001.2	2258	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_10	13.4925752462923	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTGATGAGTATATTGA	NA	False	NA	-3	True	AATAAA	-18	NA	36812369	36804207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
transcript_63880.nnic	chr18	-	2229	10	NIC	ENSMUSG00000117679.2	novel	2258	12	NA	NA	-162	0	intron_retention	FALSE	canonical	3	5	junction_9	18.684515276322	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTGATGAGTATATTGA	NA	False	NA	-3	True	AATAAA	-18	NA	36812581	36804207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36812049
transcript_63885.known	chr18	+	2362	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_3	140.362229804017	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGTACAGTTGTCCTG	NA	False	NA	11	True	AATAAA	-29	NA	36812631	36816906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
transcript_63888.known	chr18	+	312	3	FSM	ENSMUSG00000033272.13	ENSMUST00000185899.2	312	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	96	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTTTGGGGAAAGCAGGA	NA	False	NA	NA	False	NA	NA	NA	36812661	36814778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36812677_36813568_36813668_36814580
transcript_63889.known	chr18	+	403	3	FSM	ENSMUSG00000033272.13	ENSMUST00000170288.2	403	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	222	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACGGAAGGGGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	36812635	36814755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36812677_36813480_36813668_36814580
transcript_6389.nic	chr1	+	1838	10	NIC	ENSMUSG00000026641.14	novel	2167	10	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	55.998015837865	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTAGAGCCACAGTTG	6731	False	NA	49	True	GATAAA	-1	NA	171238874	171246311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_171239009_171241940_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
transcript_63891.known	chr18	+	476	2	FSM	ENSMUSG00000033272.13	ENSMUST00000168343.8	476	2	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCCTCTGTCCCAGGAA	NA	False	NA	NA	False	GATAAA	-19	NA	36812644	36814012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36812677_36813568
transcript_63897.known	chr18	+	1823	12	FSM	ENSMUSG00000006850.9	ENSMUST00000007046.9	1823	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	9.25845604107201	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTTGCCTCAGTGTTGC	NA	False	NA	53	True	AATAAA	-20	NA	36868120	36875450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207_36872395_36874104_36874200_36874714_36874883_36875099
transcript_63903.known	chr18	+	1736	9	FSM	ENSMUSG00000006850.9	ENSMUST00000237727.2	1736	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	17.9164728671689	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCATCTTCCAGATGAA	NA	False	NA	NA	False	AATAAA	-21	NA	36868091	36872885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36868310_36868440_36868554_36870509_36870633_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207
transcript_63907.known	chr18	+	613	4	FSM	ENSMUSG00000006850.9	ENSMUST00000237255.2	613	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACAAAACCATGCACACC	NA	False	NA	NA	False	NA	NA	NA	36868212	36871008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721
transcript_63908.known	chr18	-	572	3	FSM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	2929	junction_2	68.5	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGATGTCGTACGTCAT	NA	False	NA	NA	False	NA	NA	NA	36877610	36875384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36875712_36877233_36877341_36877472
transcript_63910.known	chr18	+	992	2	FSM	ENSMUSG00000006850.9	ENSMUST00000237870.2	992	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTTGTTGTTGTTAATG	NA	False	NA	NA	False	AATAAA	-15	NA	36868127	36869250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36868310_36868440
transcript_63911.known	chr18	+	1955	20	FSM	ENSMUSG00000024474.8	ENSMUST00000224284.3	1955	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877744	36890688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
transcript_63913.known	chr18	+	2349	18	FSM	ENSMUSG00000024474.8	ENSMUST00000235165.2	2349	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	177.004818811107	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877730	36890688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
transcript_63917.known	chr18	+	1996	20	FSM	ENSMUSG00000024474.8	ENSMUST00000007042.6	1996	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTTGGGCATTCC	NA	False	NA	10	True	ATTAAA	-20	NA	36877708	36890692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
transcript_6392.known	chr1	+	1822	10	FSM	ENSMUSG00000026641.14	ENSMUST00000167546.2	1822	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	58.785863758031	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTAGAGCCACAGTTG	7105	False	NA	49	True	GATAAA	-1	NA	171239248	171246311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171239431_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
transcript_63924.known	chr18	+	1619	7	FSM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_5	28.487814158962	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGTGCCAAGCTGGGA	NA	False	NA	4	True	AATAAA	-19	NA	36893272	36896863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144
transcript_63927.nic	chr18	+	1654	6	NIC	ENSMUSG00000042660.9	novel	1619	7	NA	NA	-33	-89	intron_retention	FALSE	canonical	3	317	junction_1	13.2574507353412	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTAAGCCCAAACCAGG	NA	False	NA	-85	True	AATAAA	-22	NA	36893239	36896774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36896072_36896144
transcript_63930.known	chr18	-	1451	4	FSM	ENSMUSG00000044595.11	ENSMUST00000061522.8	1451	4	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_2	7.76029781788188	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTGTCTGCTTGGTAT	NA	False	NA	-8	True	ATTAAA	-14	NA	36899251	36896725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36897541_36898148_36898611_36898945_36899064_36899195
transcript_63935.known	chr18	+	3336	13	FSM	ENSMUSG00000019143.16	ENSMUST00000152954.8	3336	13	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_10	16.7752711519731	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGACCCTTTGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	36916060	36925615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
transcript_63937.known	chr18	-	1989	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	False	NA	-2	True	AATAAA	-16	NA	36916258	36899580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
transcript_63940.known	chr18	+	2002	12	FSM	ENSMUSG00000019143.16	ENSMUST00000019287.9	2002	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	36.3770429831556	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGGTCTTTTGAGGTTT	NA	False	NA	NA	False	GGGGCT	-45	NA	36916283	36924747	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36923186_36923304_36923521_36923669_36924122
transcript_63958.known	chr18	+	2310	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGACTTTTCTTTGAT	6616	False	NA	22	True	AATAAA	-22	NA	36926928	36932719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
transcript_63965.known	chr18	-	3302	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_1	0	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTGAATCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37777257	37773543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_37776586_37776997
transcript_63967.known	chr18	+	4756	4	FSM	ENSMUSG00000102742.2	ENSMUST00000061279.10	4756	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	101.88337559299	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	NA	False	NA	17	True	AATAAA	-20	NA	37888783	37974926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_37891421_37958073_37958133_37966317_37966407_37972955
transcript_63968.known	chr18	+	5080	4	FSM	ENSMUSG00000102428.2	ENSMUST00000044851.8	5080	4	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	53.597263611743	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	7721	False	NA	17	True	AATAAA	-20	NA	37898632	37974926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_37901594_37958073_37958133_37966317_37966407_37972955
transcript_63969.known	chr18	+	4687	4	FSM	ENSMUSG00000102918.2	ENSMUST00000076807.7	4687	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	87.788888185743	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	NA	False	NA	17	True	AATAAA	-20	NA	37939462	37974926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_37942031_37958073_37958133_37966317_37966407_37972955
transcript_63970.known	chr18	+	4732	4	FSM	ENSMUSG00000102222.2	ENSMUST00000193404.2	4732	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.703815063678	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	5497	False	NA	17	True	AATAAA	-20	NA	37880045	37974926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_37882659_37958073_37958133_37966317_37966407_37972955
transcript_63974.known	chr18	-	5596	28	FSM	ENSMUSG00000024456.17	ENSMUST00000025337.14	5596	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.129800135777	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCCCTCTAGCCTCCTT	NA	False	NA	-22	True	AATAAA	-13	NA	38068434	37976655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986762_37987532_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467_37993567_38022267_38022277_38022750_38022866_38023529_38024223_38024845_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
transcript_63980.nic	chr18	-	1651	15	ISM	ENSMUSG00000024456.17	ENSMUST00000025337.14	5596	28	-77	48320	18	4234	5prime_fragment	FALSE	canonical	3	41	junction_1	3.7931194421005	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGGAAAATGACTTTGAGC	NA	False	NA	NA	False	AATGAA	-4	NA	38068511	38024975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
transcript_63987.known	chr18	-	2032	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	306	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTAGTTAGGCCATG	NA	False	NA	-5	True	AATAAA	-21	NA	38088069	38070024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
transcript_64013.known	chr18	-	4270	20	FSM	ENSMUSG00000038524.14	ENSMUST00000043437.14	4270	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_13	2.48875587737619	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGTCATGTGTTCGTC	NA	False	NA	-2	True	AATAAA	-16	NA	38102827	38090486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_38092708_38092830_38092887_38094299_38094388_38095625_38095847_38095972_38096091_38096180_38096265_38096345_38096475_38097060_38097223_38097366_38097472_38097843_38097964_38098703_38098800_38098951_38099075_38099493_38099623_38100415_38100480_38100590_38100728_38100812_38100949_38101266_38101335_38101802_38101849_38102407_38102506_38102758
transcript_64017.known	chr18	+	1767	8	FSM	ENSMUSG00000044024.17	ENSMUST00000070709.9	1767	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.03015750727543	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGCTCCAGCTCCTTCT	NA	False	NA	NA	False	AATAAA	-30	NA	38088611	38092232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38088963_38089380_38089621_38089981_38090048_38090141_38090209_38090641_38090828_38091066_38091443_38091564_38091625_38091811
transcript_64019.known	chr18	-	3880	3	FSM	ENSMUSG00000051375.16	ENSMUST00000159405.3	3880	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGGTTTCTTATTTTCT	5093	False	NA	NA	False	AATAAA	-17	NA	38345023	38329746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_38332582_38335796_38336660_38344841
transcript_6402.known	chr1	+	551	4	FSM	ENSMUSG00000103711.2	ENSMUST00000171362.2	551	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.7279220613579	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGTTGTATTTAATTTG	NA	False	NA	NA	False	AATAAA	-18	NA	171246600	171247920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171246704_171246905_171247029_171247505_171247669_171247758
transcript_64027.known	chr18	+	2394	13	FSM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.9179104200551	1369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTTGCCCTTGAGTGTG	3967	False	NA	20	True	AATAAA	-21	NA	38383311	38395682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
transcript_6403.known	chr1	+	2518	10	FSM	ENSMUSG00000038235.5	ENSMUST00000043839.5	2518	10	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_8	70.6616000978966	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTATGTTTTTTTTT	NA	False	NA	23	True	ATTAAA	-23	NA	171265102	171292171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289481_171290170_171290184_171290456_171290509_171290626
transcript_64051.known	chr18	+	1837	7	FSM	ENSMUSG00000024442.7	ENSMUST00000236078.2	1837	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	32.9515637801236	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTTGAAGATATTGAATA	3983	False	NA	NA	False	NA	NA	NA	38383327	38388605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522
transcript_64053.known	chr18	+	780	3	FSM	ENSMUSG00000024442.7	ENSMUST00000235762.2	780	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGACACGTTCAAGCTGTA	3985	False	NA	NA	False	NA	NA	NA	38383329	38384877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38383453_38384138_38384254_38384335
transcript_64058.nic	chr18	+	3228	11	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	89.3559734992575	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	894	False	NA	16	True	AATAAA	-21	NA	38429655	38450895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_64061.nic	chr18	+	3076	10	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	92.9832057051696	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	894	False	NA	16	True	AATAAA	-21	NA	38429655	38450895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_64062.known	chr18	+	2410	10	FSM	ENSMUSG00000060450.15	ENSMUST00000236116.2	2410	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	94.0070919310524	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCCTTGTGGGTCACTT	969	False	NA	NA	False	ATTAAA	-16	NA	38429730	38450239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38429852_38430552_38430629_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_6407.known	chr1	+	1273	1	FSM	ENSMUSG00000060244.2	ENSMUST00000081527.2	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACCTTGCCTTTGATG	1407	False	NA	NA	False	AATAAA	-11	NA	171331045	171332318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171331000_171332300
transcript_64074.nnic	chr18	+	3033	9	NNC	ENSMUSG00000060450.15	novel	3040	9	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	38	junction_2	77.7551244291976	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	913	False	NA	16	True	AATAAA	-21	NA	38429674	38450895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_38429852_38432806_38432950_38433464_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_64078.known	chr18	+	3040	9	FSM	ENSMUSG00000060450.15	ENSMUST00000072376.13	3040	9	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	53.7248487666555	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGACACGGTGTCCTGTTG	926	False	NA	23	True	AATAAA	-28	NA	38429687	38450902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_64084.nnic	chr18	+	2881	8	NNC	ENSMUSG00000060450.15	novel	2822	8	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	38	junction_2	78.3558080365535	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	913	False	NA	16	True	AATAAA	-21	NA	38429674	38450895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_38429852_38432806_38432950_38433464_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_64086.known	chr18	+	2822	8	FSM	ENSMUSG00000060450.15	ENSMUST00000236649.2	2822	8	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	44.1310663864829	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	985	False	NA	16	True	AATAAA	-21	NA	38429746	38450895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_64092.nnic	chr18	+	2522	6	NIC	ENSMUSG00000060450.15	novel	2822	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	90.4486594704421	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	950	False	NA	16	True	AATAAA	-21	NA	38429711	38450895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_38429852_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_64095.known	chr18	+	618	4	FSM	ENSMUSG00000060450.15	ENSMUST00000237416.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	98.2694707876708	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAAGGATCAGAAATGAAA	991	False	NA	NA	False	GATAAA	-9	NA	38429752	38449867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433538_38449577
transcript_64107.known	chr18	-	2289	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	0	0	0	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	1375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATGTGTCTTTTGT	NA	False	NA	-30	True	ATTAAA	-13	NA	38472056	38460610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
transcript_64114.known	chr18	-	2085	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	-22	True	AATAAA	-2	NA	38472029	38460602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
transcript_64116.known	chr18	-	1929	5	FSM	ENSMUSG00000052102.16	ENSMUST00000237487.2	1929	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	550.877028019866	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCATTCTCCTGAGTT	NA	False	NA	-7	True	AATAAA	-17	NA	38472033	38460587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_38462027_38466206_38466390_38468068_38468171_38471143_38471276_38471960
transcript_64124.known	chr18	-	2104	1	FSM	ENSMUSG00000052102.16	ENSMUST00000237313.2	2104	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGCATAAAGACCT	NA	False	NA	NA	False	NA	NA	NA	38471990	38469886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_38469900_38472000
transcript_64125.known	chr18	+	838	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236480.2	838	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	228.987121997758	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCTTTAAAAAATAAAGTAC	9144	False	NA	-22	True	NA	NA	NA	38552036	38597427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585425_38589107_38589175_38593597_38593704_38597329
transcript_64126.known	chr18	+	1392	8	FSM	ENSMUSG00000024425.5	ENSMUST00000025293.5	1392	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	234.910230357323	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGTTCTCAATTAGT	9129	False	NA	NA	False	NA	NA	NA	38552021	38597892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597313
transcript_64128.known	chr18	+	2280	23	FSM	ENSMUSG00000036452.19	ENSMUST00000155576.8	2280	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_21	7.92227219263608	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGAGCCCCAGTGGAGCT	NA	False	NA	NA	False	NA	NA	NA	39126528	39504215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_39126683_39230682_39230779_39232624_39232687_39235221_39235294_39243507_39243610_39244842_39244954_39253171_39253277_39254826_39254957_39259885_39259987_39265108_39265204_39283092_39283172_39338336_39338374_39360420_39360487_39362943_39363019_39376658_39376747_39378335_39378395_39379871_39379978_39419579_39419740_39429837_39429977_39439754_39439906_39490605_39490717_39496169_39496262_39504126
transcript_64130.known	chr18	+	7898	23	FSM	ENSMUSG00000036452.19	ENSMUST00000097593.9	7898	23	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_21	8.35189393080426	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTGTGTTTGTTTCTTGG	NA	False	NA	4	True	ATTAAA	-16	NA	39126197	39509337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_39126683_39230682_39230779_39232624_39232687_39235221_39235294_39243507_39243610_39244842_39244954_39253171_39253277_39254826_39254957_39259885_39259987_39265108_39265204_39283092_39283172_39338336_39338374_39360420_39360487_39362943_39363019_39376658_39376747_39378335_39378395_39379871_39379978_39419579_39419740_39429837_39429977_39439754_39439906_39490605_39490882_39496169_39496262_39504126
transcript_64131.nic	chr18	+	2746	21	NIC	ENSMUSG00000036452.19	novel	6415	22	NA	NA	-71	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	6.07124369466422	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGACTTTGAGCGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	39126126	39440426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_39126683_39230682_39230779_39232624_39232687_39235221_39235294_39243507_39243610_39244842_39244954_39253171_39253277_39254826_39254957_39259885_39259987_39265108_39265204_39283092_39283172_39338336_39338374_39360420_39360487_39362943_39363019_39376658_39376747_39378335_39378395_39379871_39379978_39419579_39419740_39429837_39429977_39439754_39439906_39440070
transcript_64135.nic	chr18	-	5394	9	NIC	ENSMUSG00000024431.16	novel	4989	9	NA	NA	-95	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_8	16.8221394299298	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGGAAAAAA	NA	False	NA	NA	False	AATAGA	-6	NA	39623036	39545039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39622529
transcript_64136.known	chr18	-	4989	9	FSM	ENSMUSG00000024431.16	ENSMUST00000025300.13	4989	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	22.6770809408971	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGGAAAAAA	NA	False	NA	NA	False	AATAGA	-6	NA	39622899	39545039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39622797
transcript_64137.known	chr18	-	6436	9	FSM	ENSMUSG00000024431.16	ENSMUST00000115567.8	6436	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_8	14.4649360523993	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTTTCATAGAACTTGT	NA	False	NA	-11	True	AATAAA	-32	NA	39623727	39543597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_39547688_39548748_39548907_39553628_39553760_39554459_39554605_39555540_39555817_39557435_39557553_39561669_39561834_39619050_39620299_39623620
transcript_6414.nnic	chr1	-	3917	9	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	-19	-1602	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.2294265253357	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGAAGGAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	171854881	171830128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_171831337_171831534_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
transcript_64144.known	chr18	-	1891	4	FSM	ENSMUSG00000024431.16	ENSMUST00000152853.2	1891	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	24.3447461820136	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCCAGCATGCCGCTATC	NA	False	NA	NA	False	GATAAA	-15	NA	39622941	39557488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_39557553_39561666_39561834_39619050_39620299_39622529
transcript_64145.nic	chr18	-	1662	4	ISM	ENSMUSG00000024431.16	ENSMUST00000115567.8	6436	9	-26	13838	-26	53	5prime_fragment	FALSE	canonical	3	29	junction_3	17.4419672692682	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATGGAAGCTTAAGGAAC	NA	False	NA	NA	False	AATGAA	-9	NA	39623753	39557435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_39557553_39561669_39561834_39619050_39620299_39623620
transcript_64150.nic	chr18	-	1609	4	ISM	ENSMUSG00000024431.16	ENSMUST00000115567.8	6436	9	-26	13891	-26	0	5prime_fragment	FALSE	canonical	3	29	junction_3	17.4419672692682	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCCAGCATGCCGCTATC	NA	False	NA	NA	False	GATAAA	-15	NA	39623753	39557488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_39557553_39561669_39561834_39619050_39620299_39623620
transcript_64151.nic	chr18	-	714	2	ISM	ENSMUSG00000024431.16	ENSMUST00000115567.8	6436	9	-26	76120	-26	179	5prime_fragment	FALSE	canonical	3	29	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCCTGGCACCAACGGT	NA	False	NA	NA	False	AATAGA	-5	NA	39623753	39619717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_39620299_39623620
transcript_64152.known	chr18	-	632	2	FSM	ENSMUSG00000024431.16	ENSMUST00000124115.2	632	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTCTGGGGAAACAGACT	NA	False	NA	NA	False	NA	NA	NA	39624354	39619896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_39620299_39624124
transcript_64155.known	chr18	-	3328	6	FSM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_2	22.8962879087419	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTGTGTCTTTCTTGCC	NA	False	NA	NA	False	NA	NA	NA	40352482	40336948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
transcript_64162.known	chr18	-	868	7	FSM	ENSMUSG00000056671.8	ENSMUST00000235606.2	868	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	31.5722275988812	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	False	NA	-14	True	AATAAA	-23	NA	42084307	42008664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
transcript_6417.nnic	chr1	-	3915	9	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	-36	-1603	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	29.2294265253357	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGGAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	171854898	171830129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_171831293_171831508_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
transcript_64175.known	chr18	-	3980	32	FSM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	0	0	0	0	multi-exon	FALSE	canonical	1	536	junction_20	328.950941881023	1795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTTTTAATCTTTATAC	NA	False	NA	41	True	AATAAA	-17	NA	42395259	42335362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
transcript_64219.nic	chr18	-	937	7	ISM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	-12	41495	-12	-171	5prime_fragment	FALSE	canonical	3	1504	junction_6	186.033823089602	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATTTGGGAAGCGGTGA	NA	False	NA	NA	False	AATAAA	-2	NA	42395271	42376857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
transcript_6422.known	chr1	-	6528	9	FSM	ENSMUSG00000026556.16	ENSMUST00000111263.9	6528	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	29.2294265253357	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTCTGTTGCTT	NA	False	NA	-7	True	AATAAA	-15	NA	171856011	171828526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564_171855613_171855931
transcript_64224.known	chr18	+	438	1	FSM	ENSMUSG00000096699.2	ENSMUST00000091925.6	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	42385462	42385900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_42385500_42385900
transcript_64225.known	chr18	-	414	2	FSM	ENSMUSG00000117662.2	ENSMUST00000236263.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTAACTGAGTTTTTATT	NA	False	NA	NA	False	TTTAAA	-22	NA	42408262	42407446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_42407614_42408015
transcript_64227.known	chr18	+	6301	21	FSM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_6	14.1470845052965	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTTCACAATTGGGGGG	NA	False	NA	2	True	AATAAA	-13	NA	42408436	42474496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42447035_42447201_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418_42460584_42465844_42465950_42466273_42466463_42470027_42470139_42471456
transcript_64232.known	chr18	+	6266	20	FSM	ENSMUSG00000024491.17	ENSMUST00000091920.6	6266	20	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	26.3045239044415	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGTAATTCTGGCTTGT	NA	False	NA	19	True	ACTAAA	-2	NA	42408417	42474607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418_42460584_42465844_42465950_42466273_42466463_42470027_42470139_42471456
transcript_64236.nic	chr18	+	2765	17	ISM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	-42	14046	-23	-14046	5prime_fragment	FALSE	canonical	3	82	junction_6	13.8427271066795	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATGAAACCAGAAGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	42408394	42460450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42447035_42447201_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418
transcript_64237.nic	chr18	+	2704	16	ISM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	-42	14222	-23	-14222	5prime_fragment	TRUE	canonical	3	82	junction_6	14.1185457230316	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTGGAAAAGCAGATAGAA	NA	False	NA	NA	False	AAAAAG	-11	NA	42408394	42460274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42447035_42447201_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228
transcript_64242.nic	chr18	+	496	3	ISM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	-42	49335	-23	-7136	5prime_fragment	FALSE	canonical	3	108	junction_1	4	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAGAAGAGGTAATATAC	NA	False	NA	NA	False	AAAAAG	-7	NA	42408394	42425161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42408658_42421172_42421292_42425047
transcript_64245.known	chr18	+	3526	23	FSM	ENSMUSG00000024498.17	ENSMUST00000173642.2	3526	23	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_21	184.268556260818	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGTGGGCAGTCTCAGAA	NA	False	NA	NA	False	NA	NA	NA	42644587	42707909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707224_42707319_42707582
transcript_64248.known	chr18	+	4417	22	FSM	ENSMUSG00000024498.17	ENSMUST00000237602.2	4417	22	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_6	86.5887404766016	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTCTCCCTTTCTTTTGTG	NA	False	NA	NA	False	TATAAA	-25	NA	42644551	42708858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
transcript_64255.known	chr18	+	4101	21	FSM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_5	111.046881991346	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGATTGTAAATGATTAT	NA	False	NA	10	True	AATAAA	-17	NA	42644565	42708619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
transcript_64258.nic	chr18	+	3102	20	ISM	ENSMUSG00000024498.17	ENSMUST00000173642.2	3526	23	-145	2984	-109	-2931	5prime_fragment	FALSE	canonical	3	436	junction_6	88.445234788465	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAGGAAGATCCTCGG	NA	False	NA	18	True	NA	NA	NA	42644442	42704925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888
transcript_6426.known	chr1	-	5698	8	FSM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	8.90768986749708	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTCTGTTGCTT	NA	False	NA	-7	True	AATAAA	-15	NA	171854862	171828526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
transcript_64261.nic	chr18	+	2932	19	ISM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	-16	3694	-2	-2931	5prime_fragment	FALSE	canonical	3	254	junction_5	114.927029989564	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAGGAAGATCCTCGG	NA	False	NA	18	True	NA	NA	NA	42644549	42704925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888
transcript_64273.nic	chr18	+	2498	16	ISM	ENSMUSG00000024498.17	ENSMUST00000173642.2	3526	23	-145	10650	-109	0	5prime_fragment	FALSE	canonical	3	436	junction_6	87.6826601380734	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAAAAAGAAGATTC	NA	False	NA	NA	False	NA	NA	NA	42644442	42697259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147
transcript_64275.known	chr18	+	2365	16	FSM	ENSMUSG00000024498.17	ENSMUST00000236088.2	2365	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_12	245.611128955238	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAAAAAGAAGATTC	NA	False	NA	NA	False	NA	NA	NA	42644563	42697259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42684174_42684226_42685556_42685693_42686472_42686563_42693998_42694118_42697147
transcript_64277.nic	chr18	+	2328	15	ISM	ENSMUSG00000024498.17	ENSMUST00000173642.2	3526	23	-145	13850	-109	-3196	5prime_fragment	FALSE	canonical	3	436	junction_6	90.41787907899	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGCAAGCCAAGGAAGAT	NA	False	NA	-8	True	AAGAAA	-8	NA	42644442	42694059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998
transcript_64281.nic	chr18	+	2336	15	ISM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	-24	11360	-10	0	5prime_fragment	FALSE	canonical	3	254	junction_5	120.72755632888	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAAAAAGAAGATTC	NA	False	NA	NA	False	NA	NA	NA	42644541	42697259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147
transcript_64283.nic	chr18	+	2159	14	ISM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	-17	14560	-3	-3196	5prime_fragment	FALSE	canonical	3	254	junction_5	125.043661013917	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGCAAGCCAAGGAAGAT	NA	False	NA	-8	True	AAGAAA	-8	NA	42644548	42694059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998
transcript_64286.nic	chr18	+	1914	12	ISM	ENSMUSG00000024498.17	ENSMUST00000173642.2	3526	23	-55	24773	-19	-68	5prime_fragment	FALSE	canonical	3	436	junction_6	97.3410974676079	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGAAGATGAGCCTATT	NA	False	NA	NA	False	AAGAAA	-1	NA	42644532	42683136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106
transcript_64287.nic	chr18	+	1861	11	ISM	ENSMUSG00000024498.17	ENSMUST00000173642.2	3526	23	-32	24950	4	-245	5prime_fragment	FALSE	canonical	3	436	junction_6	101.922764876155	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTGACATGACTGTAAA	NA	False	NA	19	True	NA	NA	NA	42644555	42682959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902
transcript_64288.nic	chr18	+	1842	11	ISM	ENSMUSG00000024498.17	ENSMUST00000236088.2	2365	16	-22	14123	-10	-68	5prime_fragment	FALSE	canonical	3	254	junction_5	138.848442555183	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGAAGATGAGCCTATT	NA	False	NA	NA	False	AAGAAA	-1	NA	42644541	42683136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106
transcript_64292.nic	chr18	+	1805	10	ISM	ENSMUSG00000024498.17	ENSMUST00000236088.2	2365	16	-15	14300	-3	-245	5prime_fragment	FALSE	canonical	3	254	junction_5	146.188614847775	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTGACATGACTGTAAA	NA	False	NA	19	True	NA	NA	NA	42644548	42682959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902
transcript_64295.nic	chr18	+	1446	7	ISM	ENSMUSG00000024498.17	ENSMUST00000173642.2	3526	23	-38	38467	-2	88	5prime_fragment	FALSE	canonical	3	436	junction_6	119.940841899478	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGAGTTGTTTTGTGACT	NA	False	NA	18	True	NA	NA	NA	42644549	42669442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242
transcript_64297.nic	chr18	+	1376	6	ISM	ENSMUSG00000024498.17	ENSMUST00000236088.2	2365	16	-14	27824	-2	81	5prime_fragment	FALSE	canonical	3	254	junction_5	185.618318061553	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAAGGTAGAGTTGTTT	NA	False	NA	11	True	AATAGA	-39	NA	42644549	42669435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242
transcript_64299.nic	chr18	+	2393	4	ISM	ENSMUSG00000024498.17	ENSMUST00000236088.2	2365	16	-46	38421	-34	-10516	5prime_fragment	FALSE	canonical	3	655	junction_3	28.6006992921502	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTCCAAAGGTTAGAGG	NA	False	NA	NA	False	NA	NA	NA	42644517	42658838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957
transcript_643.known	chr1	-	4844	7	FSM	ENSMUSG00000026158.12	ENSMUST00000027343.6	4844	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	10.9201648339208	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGCCCTCCTGATTTTCA	NA	False	NA	NA	False	AATAAA	-43	NA	23422256	23405504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_23409530_23414810_23414957_23415068_23415136_23415251_23415331_23417806_23417886_23418052_23418140_23421895
transcript_64300.known	chr18	-	2081	10	FSM	ENSMUSG00000024500.21	ENSMUST00000120632.2	2081	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAACACTGTTTACT	NA	False	NA	NA	False	NA	NA	NA	43032708	42778358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_42779073_42781738_42781831_42796174_42796345_42821366_42821532_42834534_42834713_42864851_42864965_42870965_42871132_42874160_42874259_43031809_43032004_43032517
transcript_64301.known	chr18	-	2106	14	FSM	ENSMUSG00000024501.21	ENSMUST00000025379.14	2106	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.11223541811477	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGCCAAAATGGTACAC	NA	False	NA	NA	False	AAGAAA	-10	NA	43526442	43457352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_43457486_43458789_43458953_43461389_43461570_43462755_43462927_43465936_43466079_43466945_43467103_43475306_43475428_43478170_43478240_43486945_43487027_43487807_43487870_43491298_43491464_43494026_43494212_43496567_43496657_43526054
transcript_64302.known	chr18	-	2379	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGTACAGGCGTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	43610861	43608482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_43608500_43610900
transcript_64303.known	chr18	+	8616	11	FSM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	0	0	0	0	multi-exon	FALSE	canonical	2	46	junction_10	33.3472637558166	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGGTTTTTTTGTTCT	NA	False	NA	15	True	AATAAA	-20	NA	44513593	44558036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276_44538430_44538523_44538637_44538719_44538828_44543249_44543386_44545582_44545694_44548443_44548496_44550632
transcript_64308.nic	chr18	+	1095	8	ISM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	-47	14652	-22	14232	5prime_fragment	FALSE	canonical	3	47	junction_7	38.1238582967224	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGTGCAGGGCTCTGAA	NA	False	NA	NA	False	NA	NA	NA	44513546	44543384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276_44538430_44538523_44538637_44538719_44538828_44543249
transcript_64309.nic	chr18	+	722	5	ISM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	-47	19624	-22	9260	5prime_fragment	FALSE	canonical	3	60	junction_2	45.2900375358643	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGAAGAGAAATTAGGGTA	NA	False	NA	NA	False	NA	NA	NA	44513546	44538412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276
transcript_6431.known	chr1	+	4351	33	FSM	ENSMUSG00000026553.18	ENSMUST00000027833.12	4351	33	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_16	205.587019193668	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGCCGTTTCCCTGTT	3067	False	NA	15	True	AATAAA	-20	NA	171910398	171949897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938216_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
transcript_64311.nic	chr18	+	426	3	ISM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	-47	25279	-22	3605	5prime_fragment	FALSE	canonical	3	60	junction_2	54.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATATAAAATGGGAGTCC	NA	False	NA	NA	False	NA	NA	NA	44513546	44532757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_44513754_44528939_44529092_44532690
transcript_64312.known	chr18	+	398	2	FSM	ENSMUSG00000024472.10	ENSMUST00000202306.2	398	2	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCCCCTTTTTGTTTTTC	NA	False	NA	13	True	AATAAA	-14	NA	44513568	44529152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_44513754_44528939
transcript_64313.known	chr18	-	3606	17	FSM	ENSMUSG00000071856.11	ENSMUST00000164666.6	3606	17	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	2.40361056537868	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGAGCAATGCCTGGGC	NA	False	NA	NA	False	NA	NA	NA	44795333	44562346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_44563135_44564402_44564526_44575978_44576077_44578796_44579004_44582271_44582507_44592865_44593050_44596904_44597009_44601447_44601589_44606690_44606840_44608200_44608291_44609298_44609446_44624190_44624398_44626448_44626613_44643163_44643307_44652583_44652727_44667253_44667368_44794764
transcript_64318.known	chr18	+	7215	30	FSM	ENSMUSG00000034653.12	ENSMUST00000037763.11	7215	30	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	9.69634080312122	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGAAGTTATTCAGATCT	NA	False	NA	30	True	AATAAA	-32	NA	44960812	45022784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_44961986_44963218_44963310_44966088_44966286_44967525_44967726_44970407_44970575_44973251_44973355_44974329_44974487_44977352_44977461_44978746_44978896_44980810_44980947_44983374_44983502_44983702_44983769_44987669_44987849_44988058_44988156_44988237_44988326_44988410_44988492_44990075_44990159_44991254_44991361_44992997_44993118_44993443_44993717_44995671_44995799_44997331_44997538_44997927_44998124_45004516_45004627_45005907_45006201_45010684_45010863_45018189_45018394_45019306_45019490_45020674_45020763_45020855
transcript_64322.known	chr18	+	3546	11	FSM	ENSMUSG00000054477.17	ENSMUST00000183850.8	3546	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.62554346113913	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATTTGTTTGGTCTCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	45402071	45818950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_45402484_45534100_45534187_45691356_45691556_45692417_45693692_45694287_45694384_45725072_45725492_45788264_45788407_45803284_45803396_45810003_45810132_45816137_45816208_45818341
transcript_64324.known	chr18	-	2553	10	FSM	ENSMUSG00000033949.13	ENSMUST00000167364.9	2553	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.737027731190089	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTCTTGTCCTGCTG	NA	False	NA	NA	False	NA	NA	NA	46331885	46300358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_46300835_46302211_46302510_46305444_46305736_46308614_46308740_46308937_46309192_46311467_46311564_46319188_46319336_46321457_46321784_46329140_46329376_46331580
transcript_64325.known	chr18	-	7477	9	FSM	ENSMUSG00000024477.5	ENSMUST00000236216.2	7477	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	12.5642100826116	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTACATGAGAAAATCC	NA	False	NA	NA	False	AATAAA	-9	NA	46414060	46368417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_46374769_46379628_46379738_46381937_46382123_46387345_46387392_46391151_46391285_46392670_46392823_46395956_46396025_46407656_46407776_46413746
transcript_6433.known	chr1	+	4622	33	FSM	ENSMUSG00000026553.18	ENSMUST00000135192.8	4622	33	0	0	0	0	multi-exon	FALSE	canonical	1	295	junction_11	137.915678495956	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	2764	False	NA	10	True	AATAAA	-15	NA	171910095	171949892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
transcript_64336.known	chr18	-	1845	3	FSM	ENSMUSG00000024477.5	ENSMUST00000237757.2	1845	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	63.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACCCAAGGAAA	NA	False	NA	NA	False	AAAAAG	-36	NA	46413894	46394450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_46396025_46407652_46407776_46413746
transcript_64337.nnic	chr18	-	667	3	NNC	ENSMUSG00000024477.5	novel	1039	2	NA	NA	-20	5202	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	69	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTCCTGCTGAATCC	NA	False	NA	NA	False	TTTAAA	-5	NA	46413917	46401355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_46401733_46407656_46407776_46413746
transcript_64338.known	chr18	-	2801	10	FSM	ENSMUSG00000071855.6	ENSMUST00000072835.7	2801	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	12.4909844030815	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGTTGTACGTTGTCTA	2713	False	NA	5	True	NA	NA	NA	46444995	46415217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_46416354_46416743_46416863_46418679_46418776_46420416_46420831_46423818_46424210_46424590_46424667_46426470_46426561_46429335_46429458_46432340_46432463_46444760
transcript_64343.nic	chr18	-	1051	6	ISM	ENSMUSG00000071855.6	ENSMUST00000072835.7	2801	10	-18	8604	-18	16	5prime_fragment	FALSE	canonical	3	52	junction_2	10.1587400793602	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGTAATGGTAATTACAGC	2695	False	NA	NA	False	AAGAAA	-9	NA	46445013	46423821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_46424210_46424590_46424667_46426470_46426561_46429335_46429458_46432340_46432463_46444760
transcript_64348.known	chr18	-	5726	3	FSM	ENSMUSG00000033319.6	ENSMUST00000036226.6	5726	3	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	21.5	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGTGTGCTCTCATTAA	NA	False	NA	-3	True	AATAAA	-18	NA	46659038	46634812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_46639457_46657168_46657897_46658684
transcript_64355.known	chr18	-	1348	3	FSM	ENSMUSG00000033184.15	ENSMUST00000151189.2	1348	3	0	0	0	0	multi-exon	FALSE	canonical	3	571	junction_1	23	438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATTAACTGTAGCC	NA	False	NA	NA	False	AATAAA	-21	NA	46730602	46721098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_46721756_46726315_46726562_46730157
transcript_64360.known	chr18	+	1905	4	FSM	ENSMUSG00000057561.11	ENSMUST00000235455.2	1905	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	698.014804045492	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46730821	46742245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_46730868_46731707_46731768_46732343_46732468_46740570
transcript_64364.known	chr18	+	2012	4	FSM	ENSMUSG00000057561.11	ENSMUST00000238168.2	2012	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	796.694141785639	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730767	46742316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_46730868_46731117_46731224_46731707_46731768_46740570
transcript_64368.known	chr18	+	2865	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	0	0	0	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	20	True	ATTAAA	-17	NA	46730770	46743278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
transcript_64373.known	chr18	+	2165	3	FSM	ENSMUSG00000057561.11	ENSMUST00000237478.2	2165	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	841.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730864	46742316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_46731224_46731707_46731768_46740570
transcript_64377.known	chr18	+	2651	2	FSM	ENSMUSG00000057561.11	ENSMUST00000235973.2	2651	2	0	0	0	0	multi-exon	FALSE	canonical	3	1710	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46730791	46742245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_46731768_46740570
transcript_64380.known	chr18	-	1595	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATGCACATGTTTTT	2577	False	NA	8	True	AATAAA	-30	NA	46861462	46846259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
transcript_64382.known	chr18	-	4765	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTTGTAGCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	46874646	46863210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
transcript_64384.nic	chr18	+	1270	7	NIC	ENSMUSG00000024480.10	novel	978	7	NA	NA	-2	-103	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	269.615157833037	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACCTTTCTGTTTTGCTTG	NA	False	NA	NA	False	AATAAA	-25	NA	46874940	46923587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_46875149_46887437_46887530_46890448_46890503_46891069_46891182_46912254_46912327_46913727_46913836_46922963
transcript_64385.nic	chr18	+	1600	7	NIC	ENSMUSG00000024480.10	novel	978	7	NA	NA	-229	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	269.615157833037	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCAGTGTTGACTTTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	46874713	46923690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_46875149_46887437_46887530_46890448_46890503_46891069_46891182_46912254_46912327_46913727_46913836_46922963
transcript_64386.known	chr18	+	1520	6	FSM	ENSMUSG00000024480.10	ENSMUST00000025357.9	1520	6	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_4	49.1064150595419	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTTGCCTCCCATTC	NA	False	NA	NA	False	TATAAA	-13	NA	46874942	46923893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_46875149_46887437_46887530_46891069_46891182_46912254_46912327_46913727_46913836_46922963
transcript_64392.known	chr18	+	2053	9	FSM	ENSMUSG00000024481.6	ENSMUST00000234519.2	2053	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.707106781186548	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCGCTGTGTTTGTTGTT	NA	False	NA	NA	False	AATAAA	-34	NA	46983105	47014803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_46983945_46997739_46997883_46999464_46999605_47006848_47006976_47009949_47010105_47011295_47011410_47013684_47013829_47014324_47014391_47014478
transcript_64393.known	chr18	+	2257	5	FSM	ENSMUSG00000073568.3	ENSMUST00000234910.2	2257	5	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_1	19.1441897190766	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCAGGGTTTCTTTTTTC	NA	False	NA	26	True	AATAAA	-22	NA	47054881	47067299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47065472
transcript_64396.known	chr18	+	2169	4	FSM	ENSMUSG00000073568.3	ENSMUST00000097580.2	2169	4	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_2	15.9234278833282	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCTGGGTTTTCAGGGT	2986	False	NA	16	True	AATAAA	-12	NA	47059048	47067289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_47059157_47059378_47059483_47061585_47061726_47065472
transcript_64405.known	chr18	+	1610	7	FSM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	0	0	0	0	multi-exon	FALSE	canonical	3	1216	junction_3	103.11913282973	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091882	47221062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
transcript_64406.known	chr18	+	792	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234961.2	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_5	518.443593846042	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACTTTATAAATATTT	NA	False	NA	-11	True	TTTAAA	-1	NA	47091927	47168874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47168619
transcript_64409.known	chr18	+	600	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234280.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	477.712298355401	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAGACAAATAGCAGTGAT	NA	False	NA	NA	False	NA	NA	NA	47091941	47220267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47123545_47123657_47219318_47219379_47220094
transcript_64410.known	chr18	+	528	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234701.2	528	6	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	502.986441169143	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCCATCACATTCCGGCCA	NA	False	NA	NA	False	NA	NA	NA	47091946	47220155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_47091996_47093482_47093574_47100806_47100963_47123545_47123657_47219318_47219379_47220094
transcript_64412.known	chr18	+	494	5	FSM	ENSMUSG00000042705.10	ENSMUST00000234085.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	523.690271057235	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGCAGTGATGGGAGATC	NA	False	NA	NA	False	NA	NA	NA	47091944	47220275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_47091996_47093482_47093574_47123545_47123657_47219318_47219379_47220094
transcript_64413.known	chr18	+	515	1	FSM	ENSMUSG00000117621.2	ENSMUST00000234633.2	515	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1203	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAAATGATGTAAATG	NA	False	NA	NA	False	NA	NA	NA	47245205	47245720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_47245200_47245700
transcript_64414.known	chr18	+	1747	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5256	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	AATAAA	-30	NA	48179713	48181460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_48179700_48181500
transcript_64418.known	chr18	-	3145	6	FSM	ENSMUSG00000024505.17	ENSMUST00000163590.9	3145	6	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_3	20.6145579627602	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATTCTGGTTTGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	49888668	49829211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_49831568_49833325_49833455_49856688_49856882_49857179_49857275_49861435_49861527_49888387
transcript_64421.known	chr18	-	1484	5	FSM	ENSMUSG00000024505.17	ENSMUST00000237137.2	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	81.4996165635152	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGTGTTCACTGAGCAA	NA	False	NA	-114	True	NA	NA	NA	49888634	49830645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_49831568_49833325_49833455_49857179_49857275_49861435_49861527_49888387
transcript_64423.known	chr18	-	1389	4	FSM	ENSMUSG00000024505.17	ENSMUST00000025383.10	1389	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	94.5597988341534	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGTGTTCACTGAGCAA	NA	False	NA	-114	True	NA	NA	NA	49888634	49830645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_49831568_49833325_49833455_49861435_49861527_49888387
transcript_64425.known	chr18	+	522	2	FSM	ENSMUSG00000087020.2	ENSMUST00000149935.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGAGTCCTGCTTCAT	3931	False	NA	NA	False	AATAAA	-15	NA	49888860	49890256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_49889264_49890137
transcript_64427.nic	chr18	+	772	3	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	-71	120401	-71	-88061	5prime_fragment	FALSE	canonical	3	64	junction_1	7	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTCAGTATTTTATTAT	NA	False	NA	NA	False	AAAAAG	-7	NA	49965665	49976920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_49966244_49973453_49973580_49976852
transcript_64428.known	chr18	+	1002	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148989.3	1002	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGCAAGATGTGAGAAAAAC	NA	False	NA	NA	False	AAAAAG	-40	NA	50112493	50224068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_50112694_50223266
transcript_64431.known	chr18	+	1921	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148159.3	1921	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGGATTTAGATTGTGTT	5009	False	NA	11	True	AATAAA	-24	NA	50186348	50224849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_50186687_50223266
transcript_64432.known	chr18	+	2684	24	FSM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	18.279183363144	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGCTCCTCTTTGCAT	NA	False	NA	14	True	AATAAA	-23	NA	50261267	50329336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
transcript_64439.known	chr18	+	875	1	FSM	ENSMUSG00000085939.4	ENSMUST00000145417.2	875	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	82	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCACCAAAGCAAACGAAAAT	NA	False	NA	NA	False	ATTAAA	-34	NA	50267792	50268667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_50267800_50268700
transcript_64445.nnic	chr18	+	2670	9	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	-77	2	at_least_one_novel_splicesite	TRUE	canonical	3	36	junction_8	183.6769837922	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGTGGCCTGCATATA	NA	False	NA	4	True	ATTAAA	-15	NA	52598687	52625005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515_52624796_52624860
transcript_64453.known	chr18	+	2656	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTATGTGGCCTGCATA	NA	False	NA	2	True	ATTAAA	-13	NA	52598764	52625003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
transcript_64472.known	chr18	+	2067	15	FSM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	254.699312515598	439	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTTAGGGATCTTTTTTT	NA	False	NA	38	True	AATAAA	-18	NA	53309387	53353937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
transcript_64490.known	chr18	+	1977	7	FSM	ENSMUSG00000024535.17	ENSMUST00000165032.9	1977	7	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_3	2.70801280154532	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGAGTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	53378733	53523992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_53378925_53460483_53460568_53473201_53473307_53516141_53516237_53517688_53517722_53518249_53518315_53522588
transcript_64495.known	chr18	-	1403	5	FSM	ENSMUSG00000024538.9	ENSMUST00000025419.9	1403	5	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_3	12.8354976529934	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	-11	True	ATTAAA	-20	NA	53551187	53539403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_53540138_53542196_53542382_53544058_53544153_53544577_53544692_53550911
transcript_64505.known	chr18	-	4554	21	FSM	ENSMUSG00000048799.9	ENSMUST00000049811.8	4554	21	0	0	0	0	multi-exon	FALSE	canonical	1	72	junction_13	46.6927189184781	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTGGTCGGTCTCTTT	NA	False	NA	-1	True	AATAAA	-24	NA	53877619	53814794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
transcript_64511.nnic	chr18	-	4389	20	NIC	ENSMUSG00000048799.9	novel	4554	21	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	1	8	junction_14	71.811194429764	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTGGTCGGTCTCTTT	NA	False	NA	-1	True	AATAAA	-24	NA	53877652	53814794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
transcript_64527.known	chr18	-	474	2	FSM	ENSMUSG00000048799.9	ENSMUST00000235928.2	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATTTGTAAGAACTTTGC	NA	False	NA	NA	False	NA	NA	NA	53877612	53876998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_53877420_53877559
transcript_64528.known	chr18	-	3801	15	FSM	ENSMUSG00000048799.9	ENSMUST00000237145.2	3801	15	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_5	21.0286490681797	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATAGAA	NA	False	NA	NA	False	NA	NA	NA	53877635	53841673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
transcript_64531.known	chr18	+	2180	13	FSM	ENSMUSG00000073563.4	ENSMUST00000237880.2	2180	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_10	71.3267130884355	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTTATGGAAGCTTTAA	NA	False	NA	NA	False	NA	NA	NA	53995259	54086545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065262_54065412_54066521_54066618_54069924_54070021_54081119_54081227_54086316
transcript_64533.known	chr18	+	4249	13	FSM	ENSMUSG00000073563.4	ENSMUST00000069597.8	4249	13	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_11	67.2040838706167	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATAAATAAAGGTAGTTT	NA	False	NA	NA	False	TTTAAA	-28	NA	53995193	54088620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065262_54065412_54066521_54066618_54081119_54081227_54081716_54081741_54086316
transcript_64536.nic	chr18	+	1464	6	ISM	ENSMUSG00000073563.4	ENSMUST00000237880.2	2180	13	-133	34441	-67	-29639	5prime_fragment	FALSE	canonical	3	151	junction_5	23.4640150016999	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTATGTGAACATGCCCTAA	NA	False	NA	NA	False	CATAAA	-17	NA	53995126	54052104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_53995673_54028602_54029027_54035924_54035966_54039671_54039742_54050046_54050196_54051870
transcript_64539.known	chr18	+	2605	14	FSM	ENSMUSG00000001700.11	ENSMUST00000070166.6	2605	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.64910390118809	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGTTTCCTGCATTT	2611	False	NA	NA	False	AATAAA	-26	NA	56565203	56636864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_56565430_56602604_56602725_56607090_56607203_56609674_56609742_56611920_56612025_56615692_56615789_56618283_56618356_56618447_56618529_56621822_56621935_56622686_56622810_56623742_56623831_56624966_56625072_56630391_56630486_56635659
transcript_64545.known	chr18	-	4131	20	FSM	ENSMUSG00000053644.14	ENSMUST00000174518.8	4131	20	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_19	109.003545140448	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTTTTTTCTCTGGTT	2854	False	NA	NA	False	ATTAAA	-14	NA	56706023	56657793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554_56695748_56705916
transcript_64552.known	chr18	-	1914	18	FSM	ENSMUSG00000053644.14	ENSMUST00000066208.13	1914	18	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_7	37.2351547251364	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	NA	False	NA	-5	True	ATTAAA	-30	NA	56695381	56659815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
transcript_64558.known	chr18	+	1942	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGTGTCTGTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	56705893	56720784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
transcript_64561.nic	chr18	+	923	4	ISM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	183	3338	183	-2815	5prime_fragment	FALSE	canonical	3	376	junction_1	36.7453700787218	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGATGGTGACTGTGTC	NA	False	NA	NA	False	NA	NA	NA	56706076	56717446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362
transcript_64575.known	chr18	+	2843	11	FSM	ENSMUSG00000024590.9	ENSMUST00000025486.9	2843	11	0	0	0	0	multi-exon	FALSE	canonical	3	1085	junction_1	118.73230394463	2323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTGTTCTTTTTAACCC	NA	False	NA	20	True	AATAAA	-19	NA	56840884	56886496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_56841547_56861472_56861630_56862358_56862485_56864041_56864213_56866283_56866410_56872892_56873114_56873758_56873985_56876282_56876388_56881048_56881169_56882770_56882882_56885678
transcript_6459.known	chr1	-	3016	18	FSM	ENSMUSG00000003458.13	ENSMUST00000140643.8	3016	18	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_16	166.01196438311	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171903192_171903308_171908778_171908884_171910167
transcript_646.known	chr1	-	2289	10	FSM	ENSMUSG00000026155.14	ENSMUST00000027339.14	2289	10	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_6	35.0269737329517	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTTATTTGTGGGTTTT	NA	False	NA	-2	True	ATTAAA	-17	NA	23961398	23884705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_23885645_23887344_23887653_23888383_23888550_23892503_23892632_23898103_23898195_23905297_23905379_23915454_23915531_23916789_23916876_23930940_23931075_23961118
transcript_64621.known	chr18	-	2400	5	FSM	ENSMUSG00000024592.16	ENSMUST00000025488.15	2400	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_4	15.0228991875736	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTCTGTTGGTAGTT	NA	False	NA	NA	False	NA	NA	NA	57108440	57088904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108405
transcript_64628.known	chr18	+	5030	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTGCAATGATTTAAATG	NA	False	NA	12	True	AATAAA	-22	NA	57487812	57526028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
transcript_64640.nic	chr18	+	1023	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-70	374	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57506893	57522681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
transcript_64641.known	chr18	+	523	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGACTACAATCTGAGG	NA	False	NA	NA	False	NA	NA	NA	57506963	57522307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
transcript_64642.known	chr18	+	489	4	FSM	ENSMUSG00000024594.10	ENSMUST00000236755.2	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_1	295.732987676384	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCCTGTGCATGGCATC	NA	False	NA	NA	False	NA	NA	NA	57506963	57517274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245
transcript_64644.known	chr18	+	1147	1	FSM	ENSMUSG00000024594.10	ENSMUST00000237031.2	1147	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57487817	57488964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_57487800_57489000
transcript_64646.known	chr18	+	3377	5	FSM	ENSMUSG00000024601.10	ENSMUST00000025503.10	3377	5	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_3	47.2175814713121	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAAGGGTCCTGTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	58792537	58813440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_58792870_58804279_58804400_58804519_58804724_58806321_58806439_58810836
transcript_64649.nic	chr18	+	2901	4	NIC	ENSMUSG00000024601.10	novel	3377	5	NA	NA	-19	91	intron_retention	FALSE	canonical	3	482	junction_3	34.7658836600865	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACGTACCACAATGATTT	NA	False	NA	NA	False	NA	NA	NA	58792518	58811347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_58792870_58804279_58804400_58804519_58806439_58810836
transcript_64652.known	chr18	-	1990	2	FSM	ENSMUSG00000038059.8	ENSMUST00000042710.8	1990	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTTTGTTTGTTTGTT	NA	False	NA	2	True	GATAAA	-15	NA	60635059	60607262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_60608658_60634464
transcript_64654.known	chr18	+	2948	14	FSM	ENSMUSG00000024603.9	ENSMUST00000223984.2	2948	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	65.0224358184413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATACAACGAGAACAATAA	NA	False	NA	NA	False	AGTAAA	-17	NA	60659256	60691011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678428_60678450_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299
transcript_64656.known	chr18	+	3738	13	FSM	ENSMUSG00000024603.9	ENSMUST00000025505.7	3738	13	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_9	21.4333592534835	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGGTTTCACAAGTACT	NA	False	NA	34	True	AATAAA	-24	NA	60659272	60691838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299
transcript_64661.known	chr18	+	1530	2	FSM	ENSMUSG00000024603.9	ENSMUST00000223590.2	1530	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTTACAAAGTTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	60659285	60661050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_60659438_60659672
transcript_64664.known	chr18	+	2210	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTTTAAGACTGGATTA	NA	False	NA	35	True	ATTAAA	-45	NA	60693807	60705882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
transcript_64668.nic	chr18	+	463	5	ISM	ENSMUSG00000024604.8	ENSMUST00000161544.2	3541	7	-46	4603	-14	4219	5prime_fragment	FALSE	canonical	3	649	junction_1	35.5176012703561	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGGAAAGAGAAGTATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	60693793	60698777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689
transcript_6467.known	chr1	-	2901	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	1315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
transcript_64672.known	chr18	+	602	5	FSM	ENSMUSG00000024608.12	ENSMUST00000118551.8	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	11592.6756914657	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTTGGTTCTGGTGT	NA	False	NA	63	True	AATAAA	-13	NA	60907752	60911613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_60907854_60909472_60909624_60910001_60910164_60910884_60910962_60911502
transcript_64673.known	chr18	+	597	5	FSM	ENSMUSG00000024608.12	ENSMUST00000025511.11	597	5	0	0	0	0	multi-exon	FALSE	canonical	3	20921	junction_1	2863.01274883644	3523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	68	True	AATAAA	-18	NA	60907667	60911618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
transcript_64674.known	chr18	+	1224	8	FSM	ENSMUSG00000024610.16	ENSMUST00000050487.16	1224	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	5.45108115095397	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGCTTCTGCCTCTTCA	NA	False	NA	7	True	AATAAA	-17	NA	60936919	60945724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944930_60944994_60945223
transcript_64679.known	chr18	-	4595	26	FSM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	0	0	0	0	multi-exon	FALSE	canonical	2	549	junction_9	234.649375878139	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60982001	60946826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_64686.known	chr18	-	4529	25	FSM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	0	0	0	0	multi-exon	FALSE	canonical	2	677	junction_9	198.19802369656	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60982043	60946826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_64698.nic	chr18	-	4165	24	ISM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	-57	1210	-15	1032	5prime_fragment	FALSE	canonical	2	549	junction_7	212.405780290804	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGGTAGATTGAGTTC	NA	False	NA	74	True	AAAAAG	-45	NA	60982058	60948036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_64710.nic	chr18	-	4113	23	ISM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	-71	1210	-71	1032	5prime_fragment	FALSE	canonical	2	677	junction_7	171.552729045548	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGGTAGATTGAGTTC	NA	False	NA	74	True	AAAAAG	-45	NA	60982114	60948036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_64727.known	chr18	-	4064	23	FSM	ENSMUSG00000024613.17	ENSMUST00000163446.9	4064	23	0	0	0	0	multi-exon	FALSE	canonical	2	104	junction_4	297.096601286295	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGCTTTCCAGTACGC	NA	False	NA	4	True	AAAAAG	-21	NA	60982031	60949068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954704_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_64756.nic	chr18	-	4029	22	ISM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	-71	2242	-71	0	5prime_fragment	FALSE	canonical	2	677	junction_6	175.197161368197	1433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGCTTTCCAGTACGC	NA	False	NA	4	True	AAAAAG	-21	NA	60982114	60949068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_64791.known	chr18	-	3229	20	FSM	ENSMUSG00000024613.17	ENSMUST00000177172.8	3229	20	0	0	0	0	multi-exon	FALSE	canonical	2	235	junction_10	258.566139997995	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTGGGGACAGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	60981990	60951101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_6481.known	chr1	-	2777	16	FSM	ENSMUSG00000003458.13	ENSMUST00000146137.8	2777	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	134.272790327088	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171908778_171908884_171910167
transcript_64849.nic	chr18	-	555	4	ISM	ENSMUSG00000024613.17	ENSMUST00000177172.8	3229	20	-124	21543	-71	-890	5prime_fragment	FALSE	canonical	3	1086	junction_1	85.7684220574345	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGTTTATTTCCGAGTT	NA	False	NA	NA	False	AGTAAA	-7	NA	60982114	60972644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_60972706_60976297_60976444_60978882_60978939_60981822
transcript_64851.known	chr18	+	2975	2	FSM	ENSMUSG00000036412.6	ENSMUST00000040359.6	2975	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAAGAGATGCTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	61044851	61051633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61045623_61049429
transcript_64854.known	chr18	-	3366	14	FSM	ENSMUSG00000052026.9	ENSMUST00000025520.10	3366	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	5.15671561910596	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTACCTGACTCTGCTAC	NA	False	NA	-5	True	AATAAA	-19	NA	61147294	61128451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61129904_61133493_61133662_61134363_61134465_61134641_61134742_61135194_61135327_61135397_61135511_61136312_61136438_61136558_61136663_61137460_61137596_61138783_61138923_61140446_61140682_61140787_61140920_61142493_61142678_61147048
transcript_64856.nnic	chr18	-	1874	4	NNC	ENSMUSG00000024619.9	novel	1750	3	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	439.390486924785	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTGCCATCCTTTCTCGT	7733	False	NA	-5	True	ATTAAA	-22	NA	61169292	61151933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_61153014_61153445_61153592_61157113_61157217_61168747
transcript_64857.known	chr18	-	1750	3	FSM	ENSMUSG00000024619.9	ENSMUST00000025521.9	1750	3	0	0	0	0	multi-exon	FALSE	canonical	3	995	junction_1	57.5	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTGCCATCCTTTCTCGT	7754	False	NA	-5	True	ATTAAA	-22	NA	61169271	61151933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61153014_61153445_61153592_61168747
transcript_64858.known	chr18	+	5407	23	FSM	ENSMUSG00000024620.12	ENSMUST00000025522.11	5407	23	0	0	0	0	multi-exon	TRUE	canonical	1	5	junction_6	4.00748267062652	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCGATTTCTCAGGGTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	61178221	61218133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61178645_61193215_61193262_61194276_61194598_61196938_61197206_61197868_61197997_61198076_61198252_61198786_61198980_61199569_61199686_61201167_61201292_61201813_61202029_61204732_61204828_61205701_61205835_61206312_61206418_61206699_61206811_61209590_61209751_61210689_61210851_61211600_61211720_61211949_61212073_61212695_61212808_61213367_61213468_61214026_61214133_61214888_61215122_61216292
transcript_64864.known	chr18	-	5103	21	FSM	ENSMUSG00000024622.9	ENSMUST00000091884.6	5103	21	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_14	23.3398264775041	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAGCCTGTTCAATGCT	5824	False	NA	-5	True	AATAAA	-29	NA	61310122	61264348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61265668_61266923_61267134_61268542_61268660_61269298_61269433_61270474_61270695_61273862_61274048_61274730_61274863_61279500_61279629_61280318_61280621_61283440_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290591_61290686_61290834_61295968_61296101_61298556_61298656_61300267_61300766_61304279_61304455_61305222_61305359_61309649
transcript_64868.known	chr18	-	5131	20	FSM	ENSMUSG00000024622.9	ENSMUST00000235480.2	5131	20	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_18	18.508813502905	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTTTTGATGAAGCAAG	5877	False	NA	-20	True	AATAAA	-14	NA	61310069	61264363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61265668_61266923_61267134_61268542_61268660_61269298_61269433_61270474_61270695_61273862_61274048_61274730_61274863_61279500_61279629_61280318_61280621_61283440_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290834_61295968_61296101_61298556_61298656_61300267_61300766_61304279_61304455_61305222_61305359_61309649
transcript_64871.known	chr18	-	3410	12	FSM	ENSMUSG00000024622.9	ENSMUST00000237443.2	3410	12	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	21.5206992420732	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAGAAAAAAAAA	5846	False	NA	NA	False	NA	NA	NA	61310100	61282364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290591_61290686_61290834_61295968_61296101_61298556_61298656_61300267_61300766_61304279_61304455_61305222_61305359_61309649
transcript_64876.nic	chr18	-	2109	4	ISM	ENSMUSG00000024622.9	ENSMUST00000237443.2	3410	12	-47	17101	-25	1397	5prime_fragment	FALSE	canonical	3	101	junction_2	14.6969384566991	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCTCTTCTCCACTGTA	5799	False	NA	NA	False	AATAAA	-24	NA	61310147	61299465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_61300766_61304279_61304455_61305222_61305359_61309649
transcript_64879.known	chr18	-	7814	4	FSM	ENSMUSG00000034320.15	ENSMUST00000146409.8	7814	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	1.4142135623731	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTAGTGCTGGAAGTT	8715	False	NA	-2	True	AATAAA	-29	NA	61344684	61325990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61332731_61334752_61335476_61337381_61337518_61344469
transcript_64882.known	chr18	-	879	1	FSM	ENSMUSG00000091957.4	ENSMUST00000076842.7	879	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5461	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	7434	False	NA	NA	False	NA	NA	NA	61393032	61392153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61392200_61393000
transcript_64883.known	chr18	-	965	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4585	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGACCTGCAGAGATGG	7423	False	NA	NA	False	NA	NA	NA	61393043	61392078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61392100_61393000
transcript_64889.known	chr18	-	3656	12	FSM	ENSMUSG00000033871.15	ENSMUST00000075299.13	3656	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	7.10022697809696	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGCTCTGATTACTGT	3293	False	NA	NA	False	AAAAAG	-37	NA	61533502	61431206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61431855_61432656_61432812_61435689_61435812_61437778_61437855_61440277_61441086_61442103_61442166_61442716_61442754_61443477_61444580_61445224_61445342_61448807_61449021_61456205_61456380_61533360
transcript_64898.nic	chr18	-	1407	5	ISM	ENSMUSG00000033871.15	ENSMUST00000075299.13	3656	12	-23	12635	-23	-12261	5prime_fragment	FALSE	canonical	3	29	junction_2	6.06217782649107	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGGAAGAAGAAAAAGAAGA	3270	False	NA	-2	True	NA	NA	NA	61533525	61443841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_61444580_61445224_61445342_61448807_61449021_61456205_61456380_61533360
transcript_64902.known	chr18	+	4083	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	613.012254927549	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGAGAGGCTGGTTGTCT	428	False	NA	13	True	AATAAA	-16	NA	61688344	61723132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
transcript_64903.known	chr18	+	2323	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165721.8	2323	10	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_9	364.192494210831	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAATTTTTTTA	467	False	NA	27	True	ATTAAA	-20	NA	61688383	61721375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
transcript_64904.known	chr18	+	1484	10	FSM	ENSMUSG00000024576.15	ENSMUST00000115246.9	1484	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	613.012254927549	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTATTGTAACTTAT	472	False	NA	25	True	ATTAAA	-16	NA	61688388	61715187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61715106
transcript_64905.known	chr18	+	3204	9	FSM	ENSMUSG00000024576.15	ENSMUST00000163205.8	3204	9	0	0	0	0	multi-exon	FALSE	canonical	3	1742	junction_4	121.033053336682	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGACTGCTTTTAAAGGTA	482	False	NA	NA	False	AATAAA	-13	NA	61688398	61715333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409
transcript_64906.known	chr18	+	2275	2	FSM	ENSMUSG00000024576.15	ENSMUST00000165381.2	2275	2	0	0	0	0	multi-exon	FALSE	canonical	3	1813	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCAGTC	489	False	NA	NA	False	NA	NA	NA	61688405	61691309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61688945_61689573
transcript_64907.known	chr18	+	2259	11	FSM	ENSMUSG00000024576.15	ENSMUST00000170862.8	2259	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	708.334701959462	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTGTTGCTTAGATAA	493	False	NA	-31	True	NA	NA	NA	61688409	61721253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
transcript_64909.known	chr18	+	588	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183087.2	588	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772723	61780543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61772840_61778233_61778437_61780274
transcript_64910.known	chr18	+	483	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183083.8	483	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	32.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTGTGCGCAGGGATCA	NA	False	NA	NA	False	NA	NA	NA	61772612	61780363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61772804_61778233_61778437_61780274
transcript_64911.known	chr18	+	693	3	FSM	ENSMUSG00000024578.4	ENSMUST00000025471.4	693	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATTGATTGGGCTTGTTC	NA	False	NA	NA	False	AGTAAA	-21	NA	61821005	61825609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61821076_61823188_61823479_61825276
transcript_64913.known	chr18	-	2017	6	FSM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	12.1061967603372	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGACTTATTCTTTTT	NA	False	NA	-1	True	TATAAA	-16	NA	61840706	61829907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61831048_61831434_61831576_61832363_61832576_61835266_61835442_61836582_61836790_61840564
transcript_64914.known	chr18	-	4038	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCGAGTTCTCTCATGA	NA	False	NA	-2	True	ATTAAA	-14	NA	61859394	61845494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
transcript_64920.known	chr18	-	3444	19	FSM	ENSMUSG00000033032.16	ENSMUST00000120472.2	3444	19	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_17	8.65740245593045	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCAGAGGGTAGCTGGC	NA	False	NA	1	True	AATAAA	-21	NA	61919773	61863331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870566_61870679_61871754_61871828_61872194_61872341_61874700_61874913_61876348_61876502_61876737_61876832_61879848_61879942_61881766_61881947_61884736_61884949_61885579_61885679_61888633_61888746_61889910_61890006_61890722_61890807_61891670_61891800_61919646
transcript_64928.nnic	chr18	+	1031	3	NNC	ENSMUSG00000098702.2	novel	423	2	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACTACACCCGATCTCT	NA	False	NA	3	True	AATAAA	-17	NA	61859473	61868980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_61860074_61867419_61867539_61868668
transcript_64929.known	chr18	+	890	2	FSM	ENSMUSG00000098702.2	ENSMUST00000184678.2	890	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCGATCTCTCAGTTTGC	NA	False	NA	11	True	AATAAA	-25	NA	61859503	61868988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61860074_61868668
transcript_64930.known	chr18	+	1865	1	FSM	ENSMUSG00000098702.2	ENSMUST00000184181.2	1865	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGGTCAGACTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	61859460	61861325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_61859500_61861300
transcript_64932.known	chr18	+	4536	17	FSM	ENSMUSG00000045629.9	ENSMUST00000051720.6	4536	17	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_11	4.02336923485777	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACCCTTTTGTCACCT	NA	False	NA	NA	False	ATTAAA	-18	NA	62086145	62148786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_62086239_62094014_62094114_62101059_62101188_62104012_62104119_62106357_62106502_62107519_62107719_62108639_62108714_62110947_62111144_62120626_62120761_62122263_62122306_62122414_62124116_62124208_62124390_62140718_62140870_62141527_62141651_62144877_62145029_62146103_62146301_62147969
transcript_64933.known	chr18	-	2144	1	FSM	ENSMUSG00000045730.5	ENSMUST00000053640.5	2144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCATTGCACCCGTTTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	62313030	62310886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_62310900_62313000
transcript_64940.known	chr18	-	4254	22	FSM	ENSMUSG00000042211.8	ENSMUST00000048688.8	4254	22	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_21	37.2590368590547	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTTCCAGAGCATTTC	NA	False	NA	-48	True	AATAAA	-16	NA	62681766	62637225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
transcript_64943.nnic	chr18	-	4172	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-52	91	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	64.6469568111548	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTCTTGCCATGGACTTG	NA	False	NA	43	True	AATAAA	-14	NA	62681818	62637134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62648090_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
transcript_64948.nnic	chr18	-	4409	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-196	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_21	58.4071253380051	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTTCCAGAGCATTTC	NA	False	NA	-48	True	AATAAA	-16	NA	62681962	62637225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681723
transcript_64950.nnic	chr18	-	4165	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	70.7325453417417	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTTCCAGAGCATTTC	NA	False	NA	-48	True	AATAAA	-16	NA	62681803	62637225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647991_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
transcript_64952.nnic	chr18	-	4237	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-208	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	64.6469568111548	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTTCCAGAGCATTTC	NA	False	NA	-48	True	AATAAA	-16	NA	62681974	62637225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62648090_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
transcript_64953.nnic	chr18	-	4184	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-196	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	77.8143613347303	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTTCCAGAGCATTTC	NA	False	NA	-48	True	AATAAA	-16	NA	62681962	62637225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62648090_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681723
transcript_64965.known	chr18	-	809	2	FSM	ENSMUSG00000041789.8	ENSMUST00000048109.7	809	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTGCACTAGAAGCTGT	NA	False	NA	NA	False	AATAAA	-18	NA	62889418	62887860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_62888246_62888994
transcript_64966.known	chr18	-	2101	3	FSM	ENSMUSG00000041789.8	ENSMUST00000067450.3	2101	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTTACTTGGGTAACCCT	NA	False	NA	NA	False	NA	NA	NA	62889386	62884744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_62886405_62888196_62888246_62888994
transcript_64968.known	chr18	+	10879	5	FSM	ENSMUSG00000071847.14	ENSMUST00000236135.2	10879	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	2.8613807855649	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAGAAGTGTGGTCTGTT	NA	False	NA	NA	False	TATAAA	-15	NA	63055301	63094250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63055793_63066945_63067130_63069976_63070509_63082945_63083268_63084900
transcript_64971.known	chr18	+	1129	13	FSM	ENSMUSG00000024581.14	ENSMUST00000150267.2	1129	13	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_10	86.248671487353	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACGAGTACTCGGGAGGCC	NA	False	NA	NA	False	NA	NA	NA	63110971	63130003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63125411_63125562_63127382_63127463_63128033_63128164_63129887
transcript_64973.known	chr18	+	3567	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	6	True	AATAAA	-18	NA	63110901	63132521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
transcript_64977.known	chr18	+	1359	10	FSM	ENSMUSG00000024581.14	ENSMUST00000237157.2	1359	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	76.7566299866896	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGGTTCTTTCGATG	NA	False	NA	14	True	NA	NA	NA	63110917	63130432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63111096_63113536_63113605_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
transcript_64979.nic	chr18	+	650	9	ISM	ENSMUSG00000024581.14	ENSMUST00000150267.2	1129	13	-40	5096	0	0	5prime_fragment	FALSE	canonical	3	194	junction_8	22.2763187039511	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTTACAAGGAAATTG	NA	False	NA	NA	False	AAGAAA	-2	NA	63110931	63124907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871
transcript_64980.known	chr18	+	549	8	FSM	ENSMUSG00000024581.14	ENSMUST00000236087.2	549	8	0	0	0	0	multi-exon	FALSE	non_canonical	1	9	junction_3	84.5622581900701	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCCTCCAGACTGCTGG	NA	False	NA	NA	False	NA	NA	NA	63110977	63120062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116430_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024
transcript_64985.known	chr18	+	624	3	FSM	ENSMUSG00000024581.14	ENSMUST00000137849.3	624	3	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTAGTCTTGCTTAGG	NA	False	NA	NA	False	CATAAA	-21	NA	63110946	63116096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63111096_63113536_63113605_63115689
transcript_64986.known	chr18	+	352	2	FSM	ENSMUSG00000024581.14	ENSMUST00000126870.2	352	2	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAACGGCACAGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	63110931	63113724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63111096_63113536
transcript_64988.known	chr18	+	6987	27	FSM	ENSMUSG00000040560.11	ENSMUST00000236879.2	6987	27	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_9	8.74837262973172	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGGTGGTTTTTATCC	NA	False	NA	2	True	AATAAA	-11	NA	63841785	64122825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63841991_63853288_63853461_63853827_63853935_63857191_63857271_63860689_63860865_63861509_63861587_63863160_63863281_63868649_63868796_63869474_63869578_63871813_63871956_63872175_63872425_63873097_63873319_63888106_63888303_63893641_63893857_63910598_63911369_63912939_63913029_63927295_63927415_63929228_63929353_63958195_63958310_63998355_63998578_64037100_64037288_64057882_64058001_64059649_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226
transcript_64989.known	chr18	+	7135	28	FSM	ENSMUSG00000040560.11	ENSMUST00000072726.7	7135	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	15.4999004377527	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTACTGTGTGCTGTGGT	NA	False	NA	24	True	AATAAA	-33	NA	63841755	64122847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63841991_63853288_63853461_63853827_63853935_63857191_63857271_63860689_63860865_63861509_63861587_63863160_63863281_63868649_63868796_63869474_63869578_63871813_63871956_63872175_63872425_63873097_63873319_63888106_63888303_63893641_63893857_63910598_63911369_63912939_63913029_63924866_63924963_63927295_63927415_63929228_63929353_63958195_63958310_63998355_63998578_64037100_64037288_64057882_64058001_64059649_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226
transcript_64991.known	chr18	+	2067	12	FSM	ENSMUSG00000040560.11	ENSMUST00000235648.2	2067	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_9	9.24505675375578	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCTGTATGCAGACATT	NA	False	NA	NA	False	AATAAA	-22	NA	63841765	63873569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_63841991_63853288_63853461_63853827_63853935_63857191_63857271_63860689_63860865_63861509_63861587_63863160_63863281_63868649_63868796_63869474_63869578_63871813_63871956_63872175_63872425_63873097
transcript_64993.known	chr18	-	4343	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTATTTGTTTGTTTATT	NA	False	NA	NA	False	AATAAA	-16	NA	63825508	63794164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
transcript_64995.known	chr18	-	1005	1	FSM	ENSMUSG00000060096.6	ENSMUST00000072796.6	1005	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAGGAAAAATGAAGAAGAA	NA	False	NA	NA	False	AAGAAA	-22	NA	64582760	64581755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_64581800_64582800
transcript_64996.known	chr18	-	6571	11	FSM	ENSMUSG00000024588.11	ENSMUST00000236586.3	6571	11	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_4	29.1315979650963	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTGCTGTTGCTTATA	NA	False	NA	NA	False	NA	NA	NA	64622171	64585984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64616404_64616529_64621971
transcript_64998.known	chr18	-	2059	10	FSM	ENSMUSG00000024588.11	ENSMUST00000025484.9	2059	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_9	95.9785212597583	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGCTGTGTACGCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	64622134	64590335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64621971
transcript_65.known	SIRV1	+	702	3	FSM	SIRV1B	SIRV108	702	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	13	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGACATAGGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	10582	11606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV1_+_10792_10897_11188_11403
transcript_65010.known	chr18	-	2687	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	0	0	0	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACACTTTGCTGA	NA	False	NA	NA	False	AATAAA	-20	NA	64649679	64632728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
transcript_65012.known	chr18	-	2745	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGACTTATTTTCTC	NA	False	NA	NA	False	AATAAA	-31	NA	64649723	64632717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
transcript_65016.known	chr18	-	2103	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237369.2	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_12	1341.18505510642	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649626	64633283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644970_64645054_64645121_64648396_64648480_64649486
transcript_65032.known	chr18	-	2268	14	FSM	ENSMUSG00000024587.11	ENSMUST00000237585.2	2268	14	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_13	534.16599817797	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATGGTCTGACATC	NA	False	NA	-15	True	AATAAA	-21	NA	64649508	64633288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
transcript_6505.known	chr1	+	2973	5	FSM	ENSMUSG00000026553.18	ENSMUST00000138407.8	2973	5	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_4	82.5753443831753	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAACAAAACCAAAGA	2878	False	NA	NA	False	NA	NA	NA	171910209	171921127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730
transcript_6508.known	chr1	-	772	2	FSM	ENSMUSG00000003458.13	ENSMUST00000142825.2	772	2	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGATGCAGAGGCAATGG	8996	False	NA	NA	False	NA	NA	NA	171910362	171908306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_171908884_171910167
transcript_65087.known	chr18	-	848	1	FSM	ENSMUSG00000024587.11	ENSMUST00000237027.2	848	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATCAAATAGGAA	NA	False	NA	NA	False	NA	NA	NA	64649570	64648722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_64648700_64649600
transcript_65088.known	chr18	-	1784	15	FSM	ENSMUSG00000024587.11	ENSMUST00000236186.2	1784	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1471.48717116323	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATCTAATACTGTTCTC	NA	False	NA	NA	False	AATAAA	-15	NA	64649586	64633973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_64634156_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
transcript_65090.known	chr18	+	3792	31	FSM	ENSMUSG00000024589.19	ENSMUST00000235343.2	3792	31	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	38.6915006457778	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCTACTTTATTAGAAT	NA	False	NA	102	True	NA	NA	NA	65020775	65346475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_65021167_65130418_65130493_65207794_65207877_65210768_65210808_65213088_65213143_65276866_65276918_65288326_65288389_65288716_65288820_65290915_65291083_65294585_65294722_65296065_65296243_65298642_65298718_65300584_65300645_65305345_65305478_65305986_65306107_65307115_65307314_65311989_65312068_65314398_65314454_65319396_65319456_65324507_65324574_65326146_65326377_65328130_65328253_65328985_65329057_65331701_65331798_65336946_65337021_65338703_65338765_65341119_65341180_65341462_65341571_65342723_65342821_65343333_65343407_65345854
transcript_65095.known	chr18	+	4802	30	FSM	ENSMUSG00000024589.19	ENSMUST00000236736.2	4802	30	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_13	18.1799042339286	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTGGGGGGAGGGGAGA	NA	False	NA	NA	False	NA	NA	NA	65021028	65347798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_65021167_65130418_65130493_65207794_65207877_65210768_65210808_65213088_65213143_65276866_65276918_65288326_65288389_65288716_65288820_65290915_65291083_65294585_65294722_65296065_65296243_65298642_65298718_65305345_65305478_65305986_65306107_65307115_65307314_65311989_65312068_65314398_65314454_65319396_65319456_65324507_65324574_65326146_65326377_65328130_65328253_65328985_65329057_65331701_65331798_65336946_65337021_65338703_65338765_65341119_65341180_65341462_65341571_65342723_65342821_65343333_65343407_65345854
transcript_65098.known	chr18	+	2917	28	FSM	ENSMUSG00000024589.19	ENSMUST00000235743.2	2917	28	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	31.24249155339	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAATGACAATGAATGGAA	NA	False	NA	NA	False	AATAAA	-15	NA	65021118	65346255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_65021167_65130418_65130493_65207794_65207877_65210768_65210808_65213088_65213143_65276866_65276918_65288326_65288389_65288716_65288820_65290915_65291083_65294585_65294722_65296065_65296243_65298642_65298718_65307115_65307314_65311989_65312068_65314398_65314454_65319396_65319456_65324507_65324574_65326146_65326377_65328130_65328253_65328985_65329057_65331701_65331798_65336946_65337021_65338703_65338765_65341119_65341180_65341462_65341571_65342723_65342821_65343333_65343407_65345854
transcript_651.nic	chr1	-	680	4	ISM	ENSMUSG00000026155.14	ENSMUST00000027339.14	2289	10	-104	30749	-104	-27579	5prime_fragment	FALSE	canonical	3	425	junction_3	31.3723161756065	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTAAAACCTTCATCTT	NA	False	NA	NA	False	GATAAA	-22	NA	23961502	23915454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_23915531_23916789_23916876_23930940_23931075_23961118
transcript_65108.known	chr18	+	4113	17	FSM	ENSMUSG00000032688.10	ENSMUST00000224056.3	4113	17	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	7.09643396361863	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGATGTCAGCTTACA	NA	False	NA	NA	False	NA	NA	NA	65564008	65610876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_65564470_65570892_65571060_65577902_65578025_65580623_65580784_65581249_65581429_65581992_65582090_65582645_65582679_65584617_65584645_65586745_65586776_65591239_65591444_65595806_65595985_65597111_65597187_65597784_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
transcript_65117.known	chr18	+	737	6	FSM	ENSMUSG00000024516.14	ENSMUST00000126432.9	737	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	146.338511677548	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTTTGTGGCCTCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	65933616	65950736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65945813_65947908_65948029_65949891_65949950_65950530
transcript_65119.known	chr18	+	860	6	FSM	ENSMUSG00000024516.14	ENSMUST00000025394.14	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_3	14.5244621242922	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGTCTGCCCAGTCTC	NA	False	NA	NA	False	AATAAA	-40	NA	65933585	65950755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
transcript_6512.known	chr1	+	1917	8	FSM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	20.1666526114529	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954321	171962850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
transcript_65120.known	chr18	+	2829	5	FSM	ENSMUSG00000024516.14	ENSMUST00000139538.9	2829	5	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_1	12.6565200588471	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTTTGTGGCCTCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	65933620	65950736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65948029_65949891_65949950_65950530
transcript_65122.known	chr18	-	1672	3	FSM	ENSMUSG00000024518.5	ENSMUST00000025396.5	1672	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTGCTCATCGACTACAGC	NA	False	NA	NA	False	ATTAAA	-23	NA	66072160	66067706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_66068561_66071090_66071345_66071596
transcript_65123.known	chr18	-	1741	14	FSM	ENSMUSG00000041891.17	ENSMUST00000120461.9	1741	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	258.280362323832	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTGTCTGACAACCTG	NA	False	NA	NA	False	NA	NA	NA	66135692	66115634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_66115782_66116891_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_65125.known	chr18	-	4676	13	FSM	ENSMUSG00000041891.17	ENSMUST00000236866.2	4676	13	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_5	66.5663307452716	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTTTTCCTCCAT	NA	False	NA	-22	True	AATAAA	-15	NA	66135710	66113827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_65130.nic	chr18	-	992	8	ISM	ENSMUSG00000041891.17	ENSMUST00000120461.9	1741	14	-66	10574	-48	0	5prime_fragment	FALSE	canonical	3	865	junction_5	52.4878994801348	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAATTAGACAAGAAGAAG	NA	False	NA	-11	True	AAAAAG	-40	NA	66135758	66126208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_65132.nic	chr18	-	922	7	ISM	ENSMUSG00000041891.17	ENSMUST00000120461.9	1741	14	-66	11015	-48	-441	5prime_fragment	FALSE	canonical	3	865	junction_4	54.1410195692693	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTATACACGTTTCTCC	NA	False	NA	-1	True	NA	NA	NA	66135758	66126649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_65133.nic	chr18	-	576	3	ISM	ENSMUSG00000041891.17	ENSMUST00000120461.9	1741	14	-66	15812	-48	2186	5prime_fragment	FALSE	canonical	3	933	junction_2	3.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTATACTTATTGCTAAAAC	NA	False	NA	NA	False	NA	NA	NA	66135758	66131446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_66131554_66131636_66131792_66135444
transcript_65134.known	chr18	-	2057	1	FSM	ENSMUSG00000041891.17	ENSMUST00000236070.2	2057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACAACAACAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66135689	66133632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_66133600_66135700
transcript_65135.known	chr18	+	1012	3	FSM	ENSMUSG00000024521.9	ENSMUST00000236933.2	1012	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	46	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCATGAGAAGTTTCTAAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	66591663	66597151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_66591709_66593913_66594070_66596340
transcript_65136.known	chr18	+	2727	3	FSM	ENSMUSG00000024521.9	ENSMUST00000025399.9	2727	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_2	7	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCTTTCTGTGTGTTTT	NA	False	NA	22	True	AATAAA	-34	NA	66591603	66598631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_66591884_66593913_66594070_66596340
transcript_65140.known	chr18	+	1191	1	FSM	ENSMUSG00000024524.18	ENSMUST00000237445.2	1191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGGAGGTCCCCTGGTA	NA	False	NA	NA	False	AATAAA	-20	NA	67221354	67222545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67221400_67222500
transcript_65141.known	chr18	+	2524	1	FSM	ENSMUSG00000109901.3	ENSMUST00000210564.3	2524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTATTTCCTCGCTTTT	NA	False	NA	85	True	CATAAA	-20	NA	67338436	67340960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67338400_67341000
transcript_65144.nic	chr18	-	2548	11	NIC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	59	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	13.4104436913922	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGGATCTTTTCTAA	NA	False	NA	1	True	GATAAA	-23	NA	67378679	67358113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360950_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378176
transcript_6515.nnic	chr1	+	1862	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	148.836302352481	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGGTTATTTTTCAT	NA	False	NA	23	True	AATAAA	-13	NA	171954323	171962849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961825
transcript_65164.known	chr18	+	5054	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	663	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGTCGCCACATCTT	NA	False	NA	NA	False	NA	NA	NA	67422255	67455542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
transcript_6518.nnic	chr1	+	1870	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	126.880950146994	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954318	171962850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_171954416_171956197_171956308_171956771_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
transcript_65180.known	chr18	+	1115	5	FSM	ENSMUSG00000024526.10	ENSMUST00000025404.10	1115	5	0	0	0	0	multi-exon	FALSE	canonical	1	47	junction_1	40.4042077016738	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCAACTGGTTTGT	6208	False	NA	28	True	AATAAA	-26	NA	67476673	67500855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67476911_67491779_67491925_67493165_67493313_67499444_67499627_67500451
transcript_65186.known	chr18	+	1758	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	998	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGGTCTCTTGAACTTC	NA	False	NA	12	True	AATAAA	-14	NA	67523786	67535819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
transcript_6519.nnic	chr1	+	2252	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	1	387	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	126.880950146994	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATACATGTATACAATGTA	NA	False	NA	29	True	AATATA	-24	NA	171954323	171963237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_171954416_171956197_171956308_171956771_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
transcript_65197.known	chr18	-	3094	17	FSM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_14	36.0532917186489	1187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGGGTTGCCATGTTGTG	NA	False	NA	-2	True	AATAAA	-31	NA	67582242	67537833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_67538585_67540335_67540531_67542467_67542669_67547147_67547264_67548568_67548680_67554055_67554182_67554277_67554386_67556014_67556169_67558958_67559097_67562050_67562325_67564723_67564849_67567224_67567300_67573251_67573405_67573511_67573616_67575379_67575458_67575820_67575921_67581957
transcript_6520.nnic	chr1	+	2364	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	-11	486	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	126.880950146994	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGAGTCACTTCGAGT	NA	False	NA	14	True	AAGAAA	-11	NA	171954310	171963336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_171954416_171956197_171956308_171956771_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
transcript_65221.known	chr18	+	1404	7	FSM	ENSMUSG00000024530.9	ENSMUST00000025411.9	1404	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_6	3.34995854037363	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGGCAACTCTCCTGCC	NA	False	NA	NA	False	NA	NA	NA	67597935	67612905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67598027_67605926_67606096_67606810_67606901_67609864_67609936_67610033_67610137_67611019_67611132_67612137
transcript_65222.nic	chr18	-	3793	16	NIC	ENSMUSG00000024533.18	novel	5405	17	NA	NA	-81	-1089	combination_of_known_junctions	FALSE	canonical	3	61	junction_15	10.4234777732237	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGCATGTTAGTAGTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	67743941	67622932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_67624620_67628209_67628347_67628432_67628461_67629631_67629703_67630246_67630385_67636500_67636644_67638720_67638815_67639623_67639797_67652360_67652491_67652873_67652961_67661933_67662099_67663476_67663555_67678684_67678811_67685643_67685878_67720894_67720930_67743474
transcript_65226.known	chr18	-	3576	12	FSM	ENSMUSG00000073542.4	ENSMUST00000097542.4	3576	12	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	9.14800253679584	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTTTTGGATGTCTTGA	830	False	NA	-4	True	AATAAA	-18	NA	67774406	67750869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_67752443_67752605_67752824_67756206_67756541_67757999_67758167_67759589_67759779_67762888_67763018_67766520_67766619_67767824_67768011_67770208_67770434_67771335_67771412_67773077_67773234_67774181
transcript_65236.known	chr18	+	1059	7	FSM	ENSMUSG00000024537.6	ENSMUST00000025418.4	1059	7	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	27.1871088733041	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774668	67787232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
transcript_65237.known	chr18	+	1300	7	FSM	ENSMUSG00000024537.6	ENSMUST00000235799.2	1300	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	156.039168871864	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774670	67787232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67775049_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
transcript_65239.nnic	chr18	+	1018	6	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	169.713169789501	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774650	67787232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_67774806_67777378_67777551_67781197_67781317_67781842_67782017_67786222_67786344_67786955
transcript_65241.known	chr18	+	795	3	FSM	ENSMUSG00000024537.6	ENSMUST00000236522.2	795	3	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_2	23.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	67774677	67779557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67774806_67777378_67777551_67779062
transcript_65242.nic	chr18	+	301	2	ISM	ENSMUSG00000024537.6	ENSMUST00000236522.2	795	3	-43	2049	-34	-2049	5prime_fragment	FALSE	canonical	3	483	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGAAGAAGAAAATTCAAAT	NA	False	NA	NA	False	NA	NA	NA	67774634	67777508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_67774806_67777378
transcript_65243.known	chr18	-	1497	10	FSM	ENSMUSG00000024539.18	ENSMUST00000120934.8	1497	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	167.715440958197	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTGGTTTGTGTGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	67857643	67798580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_67798945_67805736_67805839_67808789_67808900_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
transcript_65244.known	chr18	-	1568	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	132.404915801473	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	False	NA	-15	True	ATTAAA	-18	NA	67857658	67798581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
transcript_65245.known	chr18	-	2667	9	FSM	ENSMUSG00000024539.18	ENSMUST00000122412.2	2667	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	140.12890271104	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATTGTCCCTTACCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	67857665	67804281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
transcript_65250.known	chr18	+	3542	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	19	True	AATAAA	-21	NA	67907945	67928557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
transcript_65258.known	chr18	+	1684	8	FSM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_6	144.078210053585	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTTGTGAGACCAGTG	NA	False	NA	NA	False	AATAAA	-11	NA	67908044	67925663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933
transcript_65269.known	chr18	-	698	2	FSM	ENSMUSG00000097835.2	ENSMUST00000180450.2	698	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTTATGAAAGCTGTTT	NA	False	NA	NA	False	AATAAA	-33	NA	67907927	67906781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_67907025_67907472
transcript_65272.known	chr18	+	8093	46	FSM	ENSMUSG00000024542.10	ENSMUST00000025425.7	8093	46	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	30.2980747463157	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTTTTTGTATTTTA	107	False	NA	10	True	AATAAA	-19	NA	67933176	68018241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962903_67963035_67967566_67968390_67968479_67968595_67970987_67971157_67974054_67974932_67976206_67976356_67980422_67980654_67983182_67983309_67983480_67983625_67983745_67983807_67984735_67984876_67985027_67985121_67985974_67986094_67987121_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011147_68011609_68011732_68013821_68013949_68014354_68014414_68017809
transcript_65277.nic	chr18	+	2506	17	ISM	ENSMUSG00000024542.10	ENSMUST00000025425.7	8093	46	-41	50514	-41	4363	5prime_fragment	FALSE	canonical	3	91	junction_4	13.350444749146	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGGAAGAAGCAAGCCTT	66	False	NA	NA	False	NA	NA	NA	67933135	67967727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962903_67963035_67967566
transcript_65282.nic	chr18	+	1841	13	ISM	ENSMUSG00000024542.10	ENSMUST00000225077.2	2607	16	-68	6993	-41	-6993	5prime_fragment	FALSE	canonical	3	91	junction_4	14.0423466699836	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATGAAGAAGAATTCAATAA	66	False	NA	NA	False	TATAAA	-43	NA	67933135	67956371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345
transcript_65284.known	chr18	+	1425	4	FSM	ENSMUSG00000024542.10	ENSMUST00000224387.2	1425	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	11.1455023315337	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	113	False	NA	NA	False	NA	NA	NA	67933182	67938447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435
transcript_65286.known	chr18	+	2607	16	FSM	ENSMUSG00000024542.10	ENSMUST00000225077.2	2607	16	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	13.4940316024859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAAAGAATGAA	134	False	NA	NA	False	NA	NA	NA	67933203	67963364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962903
transcript_65288.nnic	chr18	+	1922	7	NNC	ENSMUSG00000024544.10	novel	2495	6	NA	NA	-226	-888	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	4.61880215351701	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGGTCTTCGTTTCTGCTT	6398	False	NA	NA	False	AGTAAA	-15	NA	68066101	68387734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_68066460_68138755_68138845_68197287_68197758_68239621_68239763_68368725_68368881_68383641_68383696_68387079
transcript_65291.known	chr18	+	2495	6	FSM	ENSMUSG00000024544.10	ENSMUST00000063775.5	2495	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.7070070514593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTATTTTGTGTACTG	6624	False	NA	NA	False	AATAAA	-16	NA	68066327	68388622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_68066460_68197287_68197758_68239621_68239763_68368725_68368881_68383641_68383696_68387079
transcript_65298.known	chr18	-	9651	4	FSM	ENSMUSG00000038121.7	ENSMUST00000042852.7	9651	4	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_3	16.3367343397905	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTGTGGATACTGTTG	NA	False	NA	NA	False	AATAAA	-14	NA	68433404	68393257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_68402024_68405633_68405746_68408832_68409346_68433144
transcript_653.known	chr1	-	683	3	FSM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	0.5	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTATTTTATTTTTA	NA	False	NA	-1	True	AATAAA	-23	NA	24044737	24035019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_24035442_24042237_24042388_24044626
transcript_65313.known	chr18	+	5008	11	FSM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	0	0	0	0	multi-exon	FALSE	canonical	3	765	junction_7	139.06832852954	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTGATTCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	68433425	68457923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
transcript_65315.nic	chr18	+	1570	10	ISM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	-25	4521	-25	1087	5prime_fragment	FALSE	canonical	3	765	junction_7	145.735681591328	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTTTTTCTGATACATT	NA	False	NA	12	True	ATTAAA	-13	NA	68433400	68453402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296
transcript_65319.known	chr18	+	1852	10	FSM	ENSMUSG00000009535.14	ENSMUST00000025427.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	337.084266125157	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGCAATTCTGAGACTC	NA	False	NA	87	True	AATAAA	-17	NA	68433470	68454977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388
transcript_65327.nic	chr18	+	1333	8	ISM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	-25	6770	-25	-1162	5prime_fragment	FALSE	canonical	3	765	junction_7	120.069877613847	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTCTTAAAACGAATGCAG	NA	False	NA	NA	False	ATTAAA	-17	NA	68433400	68451153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064
transcript_65329.known	chr18	+	2474	7	FSM	ENSMUSG00000009535.14	ENSMUST00000151833.2	2474	7	0	0	0	0	multi-exon	FALSE	canonical	3	867	junction_3	84.7042239534461	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATGTGAAA	NA	False	NA	NA	False	AATAGA	-5	NA	68433468	68448521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058
transcript_65341.known	chr18	+	8577	20	FSM	ENSMUSG00000053477.19	ENSMUST00000114985.10	8577	20	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	28.0844590851464	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTAGTCTTTTAGTATT	1960	False	NA	NA	False	TATAAA	-11	NA	69477559	69822150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_69478097_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
transcript_65342.known	chr18	+	3694	20	FSM	ENSMUSG00000053477.19	ENSMUST00000114982.8	3694	20	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	28.7490816425648	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAAAAAAAAAATGCC	3192	False	NA	NA	False	AAAAAG	-30	NA	69478791	69817597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_69479011_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147
transcript_65343.known	chr18	+	7147	20	FSM	ENSMUSG00000053477.19	ENSMUST00000078486.13	7147	20	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	28.0844590851464	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTCTTCTGTAAGACCAAA	3192	False	NA	NA	False	TATAAA	-43	NA	69478791	69821038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_69479011_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
transcript_65345.known	chr18	+	2986	20	FSM	ENSMUSG00000053477.19	ENSMUST00000202116.4	2986	20	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_17	23.6466368624176	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTCCCACACTGTGGAG	3190	False	NA	NA	False	NA	NA	NA	69478789	69816461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147
transcript_65347.known	chr18	+	2192	20	FSM	ENSMUSG00000053477.19	ENSMUST00000114980.8	2192	20	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	22.735258229433	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGCATTCCCAATTATC	3831	False	NA	64	True	AATATA	-40	NA	69479430	69816296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
transcript_65354.known	chr18	+	2615	19	FSM	ENSMUSG00000053477.19	ENSMUST00000202674.4	2615	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.1965414905175	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATGAATGAAAGAAA	2000	False	NA	103	True	NA	NA	NA	69477599	69816335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_69478097_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697107_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147
transcript_65360.known	chr18	+	3070	13	FSM	ENSMUSG00000053477.19	ENSMUST00000114977.5	3070	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	34.2271821802497	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATGCCAA	NA	False	NA	NA	False	AAAAAG	-32	NA	69726496	69817599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_69726656_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147
transcript_65361.known	chr18	+	2437	13	FSM	ENSMUSG00000053477.19	ENSMUST00000114978.9	2437	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	33.3437483729043	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATAATTAATTTGTAA	NA	False	NA	NA	False	NA	NA	NA	69726058	69816516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_69726656_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
transcript_65364.known	chr18	+	1618	11	FSM	ENSMUSG00000038903.14	ENSMUST00000043929.11	1618	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.64869932417586	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCATGTCCTTCCA	NA	False	NA	3	True	AATAAA	-14	NA	70058536	70102555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_70058692_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
transcript_65369.nnic	chr18	-	3287	9	NIC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	-330	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_5	68.2567533288831	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605910	70585282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70600557_70601124_70601589_70602519_70602849_70604743_70605051_70605361
transcript_65373.known	chr18	-	2291	9	FSM	ENSMUSG00000044906.7	ENSMUST00000067556.4	2291	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	54.5590276672889	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAAGGGGAAGACAC	NA	False	NA	NA	False	NA	NA	NA	70605551	70586210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
transcript_65380.nic	chr18	-	3855	8	NIC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	-330	0	intron_retention	FALSE	canonical	3	82	junction_4	46.2782180878624	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605910	70585282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70601589_70602519_70602849_70604743_70605051_70605361
transcript_65384.nic	chr18	-	3851	8	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-330	0	intron_retention	FALSE	canonical	3	98	junction_4	41.1701298496463	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605910	70585282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70601589_70602519_70602849_70604743_70605051_70605361
transcript_65394.known	chr18	-	4393	4	FSM	ENSMUSG00000044906.7	ENSMUST00000237800.2	4393	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_3	21.483844059096	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTAGGTAAATTACTGA	NA	False	NA	NA	False	AATAAA	-21	NA	70605575	70598045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_70601589_70602519_70602849_70604743_70605051_70605361
transcript_65406.known	chr18	-	3504	10	FSM	ENSMUSG00000038425.19	ENSMUST00000160713.2	3504	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	123.922118114664	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTAGGCTCTCACTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	70663339	70641757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70657801_70658600_70659627_70659793_70661772_70661899_70662821
transcript_65410.known	chr18	-	2662	10	FSM	ENSMUSG00000038425.19	ENSMUST00000159389.8	2662	10	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_7	125.276385801579	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663209	70641755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658531_70659627_70659793_70661772_70661899_70662821
transcript_65412.known	chr18	-	2736	10	FSM	ENSMUSG00000038425.19	ENSMUST00000161542.8	2736	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	94.1501296524877	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTCACTGTAAGTTGTG	NA	False	NA	-12	True	AATAAA	-23	NA	70663209	70641750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70662821
transcript_65413.known	chr18	-	2591	10	FSM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_9	76.3322820564839	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGGCTCTCACTGTAAGT	NA	False	NA	-16	True	AATAAA	-19	NA	70663505	70641754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
transcript_65418.nnic	chr18	-	2383	9	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_6	112.236357745608	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663392	70641755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658414_70658600_70659627_70659793_70663258
transcript_65419.nnic	chr18	-	2740	9	NIC	ENSMUSG00000038425.19	novel	2736	10	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	108.347747438514	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663344	70641755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70662821
transcript_65420.nnic	chr18	-	2351	9	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-53	0	combination_of_known_splicesites	FALSE	canonical	3	116	junction_8	75.0961883187156	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663392	70641755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
transcript_65433.known	chr18	-	4971	4	FSM	ENSMUSG00000036941.3	ENSMUST00000041138.3	4971	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	4.32049379893857	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTGTCCTGCGGTTCT	NA	False	NA	NA	False	NA	NA	NA	73887550	73868108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_73872372_73875407_73875873_73880237_73880403_73887472
transcript_65435.known	chr18	-	2638	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGCCTTCTTTTGTA	371	False	NA	NA	False	AATAAA	-16	NA	73948509	73902973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
transcript_65440.known	chr18	-	715	4	FSM	ENSMUSG00000024556.5	ENSMUST00000237619.2	715	4	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	22.8375908439475	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATCTTTGTTTTTGTAG	360	False	NA	NA	False	AATAAA	-13	NA	73948520	73930732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_73931050_73934799_73934934_73938122_73938241_73948374
transcript_65441.nic	chr18	-	428	3	ISM	ENSMUSG00000024556.5	ENSMUST00000237619.2	715	4	-49	4086	-49	-4086	5prime_fragment	FALSE	canonical	3	569	junction_2	5.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTAGCCCTTTGGAAAAG	311	False	NA	NA	False	NA	NA	NA	73948569	73934818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_73934934_73938122_73938241_73948374
transcript_65442.known	chr18	-	4594	6	FSM	ENSMUSG00000024558.13	ENSMUST00000091851.10	4594	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	8.45221864364617	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTCAGGAATTGTCACGT	9818	False	NA	NA	False	AATAAA	-19	NA	74198000	74061556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_74064166_74066967_74067170_74068076_74068239_74070200_74070346_74102961_74104348_74197910
transcript_65443.nic	chr18	-	4843	6	NIC	ENSMUSG00000024558.13	novel	4594	6	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	6.68131723539603	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTCAGGAATTGTCACGT	9368	False	NA	NA	False	AATAAA	-19	NA	74198450	74061556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_74064166_74066967_74067170_74068076_74068239_74070200_74070346_74102961_74104348_74198111
transcript_65448.nnic	chr18	-	1181	7	NNC	ENSMUSG00000036223.17	novel	2605	7	NA	NA	-13	-283	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	150.093766988802	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTACTGCCTTTAGGAACGT	6713	False	NA	-4	True	AGTAAA	-31	NA	74340902	74329832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339833_74339956_74340664
transcript_65449.known	chr18	-	2630	7	FSM	ENSMUSG00000036223.17	ENSMUST00000040188.16	2630	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	177.375699826354	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGCATGGTGGCTTCC	6765	False	NA	-8	True	NA	NA	NA	74340850	74328369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340600
transcript_65450.known	chr18	-	2605	7	FSM	ENSMUSG00000036223.17	ENSMUST00000177604.2	2605	7	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_6	32.9768437274131	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGCATGGTGGCTTCC	6726	False	NA	-8	True	NA	NA	NA	74340889	74328369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340664
transcript_65459.nnic	chr18	+	2641	15	NNC	ENSMUSG00000024560.8	novel	2620	15	NA	NA	-47	0	at_least_one_novel_splicesite	TRUE	canonical	3	29	junction_13	61.7303219905844	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTCTCTCTCAATAGT	NA	False	NA	14	True	AATAAA	-17	NA	74349147	74354564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353644_74353898_74354052_74354129
transcript_65461.known	chr18	+	2620	15	FSM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_6	27.3663729300567	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTCTCTCTCAATAGT	NA	False	NA	14	True	AATAAA	-17	NA	74349201	74354564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
transcript_6547.known	chr1	+	855	5	FSM	ENSMUSG00000003464.14	ENSMUST00000147799.8	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_2	19.600701518058	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTGACTGATTCATT	NA	False	NA	NA	False	TATAAA	-14	NA	171954322	171958578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178
transcript_65507.nic	chr18	+	4736	16	NIC	ENSMUSG00000024561.12	novel	2838	16	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	19.7033556081755	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATGTTAGTGTTTC	NA	False	NA	NA	False	TTTAAA	-17	NA	74401212	74414305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
transcript_6551.known	chr1	+	642	4	FSM	ENSMUSG00000003464.14	ENSMUST00000127662.2	642	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	205.496147571352	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACATTTTCTGACAAATT	NA	False	NA	NA	False	NA	NA	NA	171954339	171957762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957472
transcript_65510.known	chr18	+	2838	16	FSM	ENSMUSG00000024561.12	ENSMUST00000224047.2	2838	16	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_11	21.6794833886788	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74401361	74415756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
transcript_65514.nic	chr18	+	4568	15	NIC	ENSMUSG00000024561.12	novel	2833	15	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_10	18.2702222320409	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATGTTAGTGTTTC	NA	False	NA	NA	False	TTTAAA	-17	NA	74401212	74414305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
transcript_65516.known	chr18	+	2833	15	FSM	ENSMUSG00000024561.12	ENSMUST00000097530.5	2833	15	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	20.6853245819645	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCATAAGGTTGCCATG	NA	False	NA	NA	False	NA	NA	NA	74401245	74415803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
transcript_65537.known	chr18	+	1516	10	FSM	ENSMUSG00000036880.11	ENSMUST00000041053.11	1516	10	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_8	17.7325814376939	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	13	True	AATAAA	-17	NA	74912267	74939279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938925
transcript_65538.nic	chr18	+	2349	9	NIC	ENSMUSG00000036880.11	novel	1516	10	NA	NA	-276	0	intron_retention	FALSE	canonical	3	191	junction_7	16.7779617355625	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	13	True	AATAAA	-17	NA	74911991	74939279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74932246_74934367_74934439_74937071_74937227_74938925
transcript_65540.known	chr18	-	3787	10	FSM	ENSMUSG00000053846.6	ENSMUST00000066532.5	3787	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_4	1.89215404065849	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTTGTCCTGTAACTCA	NA	False	NA	NA	False	NA	NA	NA	75094334	75072392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_75074410_75076410_75076516_75078874_75079094_75080076_75080198_75081043_75081287_75082128_75082351_75087248_75087361_75088489_75088670_75090268_75090451_75093948
transcript_65541.known	chr18	+	775	7	FSM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	6761	junction_1	2088.63605148325	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGACTGTCTAGTAGC	NA	False	NA	21	True	ATTAAA	-37	NA	75133547	75136452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
transcript_65542.nnic	chr18	+	927	7	NNC	ENSMUSG00000062328.9	novel	775	7	NA	NA	38	-106	at_least_one_novel_splicesite	FALSE	canonical	3	266	junction_1	4216.73927803094	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133585	75136345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_75133912_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
transcript_65550.known	chr18	+	65	1	FSM	ENSMUSG00000064844.3	ENSMUST00000082910.3	65	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGCTGGCCGTAGTAG	NA	False	NA	NA	False	NA	NA	NA	75134950	75135015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_75135000_75135000
transcript_65551.known	chr18	+	524	3	FSM	ENSMUSG00000036299.6	ENSMUST00000236421.2	524	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	354	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGGTCCGTGTGAGCA	NA	False	NA	NA	False	ATTAAA	-43	NA	75138939	75142664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_75138972_75141721_75141898_75142348
transcript_65552.known	chr18	+	1266	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_1	205.5	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGATGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	75138970	75143223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_75139186_75141721_75141898_75142348
transcript_65553.known	chr18	+	979	3	FSM	ENSMUSG00000036299.6	ENSMUST00000040284.6	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	315	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTGCTTTTTGTCTTT	NA	False	NA	26	True	ATTAAA	-17	NA	75138938	75143004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_75139086_75141721_75141898_75142348
transcript_65565.known	chr18	+	2456	17	FSM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_13	17.5886149255705	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151855	75420035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
transcript_65574.nnic	chr18	+	2440	16	NIC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-53	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_5	51.8457541388128	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151798	75420035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
transcript_65577.nnic	chr18	+	2244	15	NIC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-53	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	54.3467701760779	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151798	75420035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
transcript_65587.known	chr18	+	4278	4	FSM	ENSMUSG00000025880.12	ENSMUST00000026999.10	4278	4	0	0	0	0	multi-exon	FALSE	canonical	3	1522	junction_2	99.0667563929607	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTGTTGTTCAGAGCTT	NA	False	NA	19	True	ATTAAA	-24	NA	75500599	75529006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_75502640_75503965_75504020_75508944_75509020_75526897
transcript_65591.known	chr18	+	793	3	FSM	ENSMUSG00000025880.12	ENSMUST00000174843.8	793	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTCGGACAACAAGAGTC	NA	False	NA	NA	False	NA	NA	NA	75502060	75527057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_75502640_75503965_75504020_75526897
transcript_65594.known	chr18	-	6031	12	FSM	ENSMUSG00000052928.10	ENSMUST00000165559.3	6031	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.63165724111457	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75830625	75564294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_75568481_75570241_75570296_75604935_75605092_75652809_75653179_75654447_75654941_75698074_75698152_75738698_75738775_75743739_75743845_75744776_75744851_75757299_75757372_75770203_75770410_75830462
transcript_65600.nnic	chr18	+	4182	5	NNC	ENSMUSG00000044646.16	novel	4572	5	NA	NA	79592	-419	intron_retention	FALSE	canonical	0	0	junction_2	1.4790199457749	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGCTAGTTCTTTTTG	NA	False	NA	NA	False	TATAAA	-15	NA	76032877	76281213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_76033098_76033618_76033833_76144699_76144762_76269897_76271122_76278751
transcript_65601.known	chr18	+	2147	3	FSM	ENSMUSG00000044646.16	ENSMUST00000167921.2	2147	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATACATTTTA	NA	False	NA	NA	False	NA	NA	NA	76192528	76279514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_76192689_76269897_76271122_76278751
transcript_65603.known	chr18	+	8089	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_5	13.3850663054017	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGGAGTTGAGTATGGAA	NA	False	NA	10	True	AATAAA	-13	NA	76374650	76444034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
transcript_65614.known	chr18	+	1645	10	FSM	ENSMUSG00000024563.17	ENSMUST00000091831.13	1645	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	75.1282031834933	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATCAAAGACTCGCTGT	NA	False	NA	NA	False	NA	NA	NA	76374771	76437801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_76375051_76395510_76395799_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
transcript_65621.known	chr18	+	1538	8	FSM	ENSMUSG00000025421.16	ENSMUST00000145634.9	1538	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.606361581991	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77031839	77059101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77031882_77033038_77033054_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_65622.known	chr18	+	1640	8	FSM	ENSMUSG00000025421.16	ENSMUST00000026485.15	1640	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.606361581991	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77032079	77059101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77032224_77033038_77033054_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_65627.known	chr18	+	5477	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	128.264050562372	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATATAAAATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	77031787	77063003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_65629.known	chr18	+	1503	4	FSM	ENSMUSG00000090000.3	ENSMUST00000136800.2	1503	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	763.929461548789	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAAGCGTCTGATTT	NA	False	NA	8	True	AATAAA	-10	NA	77017740	77029301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77017913_77018319_77018456_77027263_77027366_77028208
transcript_65630.known	chr18	+	1402	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	0	0	0	0	multi-exon	FALSE	canonical	3	1641	junction_2	78	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGTCTGATTTATGCCTT	NA	False	NA	15	True	AATAAA	-17	NA	77017712	77029308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77017913_77027263_77027366_77028208
transcript_65632.known	chr18	+	335	2	FSM	ENSMUSG00000090000.3	ENSMUST00000128679.2	335	2	0	0	0	0	multi-exon	FALSE	canonical	3	1797	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGGTTCTCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	77017758	77027444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77017913_77027263
transcript_65634.known	chr18	+	1704	5	FSM	ENSMUSG00000025421.16	ENSMUST00000097521.12	1704	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	173.436587835439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGAAAATGCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	77031822	77049749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77048509
transcript_65637.nnic	chr18	-	1635	13	NNC	ENSMUSG00000025420.14	novel	1674	14	NA	NA	14041	-862	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	7.91754381105656	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTGCCTTTGTCAGAC	NA	False	NA	NA	False	NA	NA	NA	77120898	77081756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_77082201_77085294_77085387_77090126_77090246_77090432_77090497_77092418_77092518_77095203_77095282_77095480_77095580_77098642_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
transcript_65639.nnic	chr18	-	1145	6	NNC	ENSMUSG00000025420.14	novel	1674	14	NA	NA	13955	5	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	3.26190128606002	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGTGTGCTGCATTATT	NA	False	NA	NA	False	GATAAA	-1	NA	77120984	77098223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
transcript_65656.nnic	chr18	+	2655	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26716	0	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	268	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	6369	False	NA	13	True	AATAAA	-26	NA	77126187	77240813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_65657.nnic	chr18	+	2753	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26716	98	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACTTTCTATGGAGAT	6369	False	NA	111	True	AATAGA	-20	NA	77126187	77240911	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_65658.nnic	chr18	+	3040	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26716	166	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTGTAGAATTTTCTG	6369	False	NA	44	True	TATAAA	-27	NA	77126187	77241198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_6566.known	chr1	+	2754	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_1	55.9704063816991	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTCTCTATGAATCCA	NA	False	NA	56	True	TTTAAA	-6	NA	171975684	172023074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
transcript_65668.known	chr18	+	2254	14	FSM	ENSMUSG00000025423.17	ENSMUST00000168882.9	2254	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	369.279756365738	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	8510	False	NA	13	True	AATAAA	-26	NA	77153514	77240813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77153604_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_65670.nnic	chr18	+	2225	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26716	-124	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	189	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTTGATTCTTTCAAGAA	6369	False	NA	19	True	AATAAA	-29	NA	77126187	77234509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_65671.nnic	chr18	+	2349	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26716	0	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATGTAGCATTTATGCT	6369	False	NA	19	True	ATTAAA	-31	NA	77126187	77234633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_65680.known	chr18	+	2077	13	FSM	ENSMUSG00000025423.17	ENSMUST00000114776.4	2077	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	406.688660607432	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATGTAGCATTTATGCT	8381	False	NA	19	True	ATTAAA	-31	NA	77153385	77234633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77153604_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_65696.known	chr18	+	3060	14	FSM	ENSMUSG00000025423.17	ENSMUST00000114777.10	3060	14	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	299.077338556217	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCATAATTCTCATCAAT	7899	False	NA	NA	False	CATAAA	-17	NA	77152903	77241496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_65698.known	chr18	-	7300	8	FSM	ENSMUSG00000025427.16	ENSMUST00000026494.14	7300	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	6.65168384389875	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGGAGTGCAGAGTGTT	NA	False	NA	0	True	AATAAA	-24	NA	77652832	77543805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_77550146_77550579_77550687_77554372_77554469_77554630_77554736_77555936_77556067_77563169_77563281_77571844_77572161_77652737
transcript_65701.known	chr18	-	5125	5	FSM	ENSMUSG00000047466.11	ENSMUST00000074653.6	5125	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	68.2948570538075	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGACTCTTTCTGAG	NA	False	NA	-8	True	AATAAA	-15	NA	77801633	77719192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_77723025_77730763_77730891_77740824_77740993_77761595_77762381_77801420
transcript_65702.known	chr18	-	1606	5	FSM	ENSMUSG00000047466.11	ENSMUST00000237203.2	1606	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	65.6291665343999	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAACTTAGCACAGAGA	NA	False	NA	-7	True	ATTAAA	-15	NA	77802186	77722682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_77723025_77730763_77730891_77740824_77740993_77761595_77762381_77802002
transcript_65705.nnic	chr18	-	5042	4	NIC	ENSMUSG00000047466.11	novel	5125	5	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	18.3726850393609	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTGACTCTTTCTGAG	NA	False	NA	-8	True	AATAAA	-15	NA	77801718	77719192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_77723025_77730763_77730891_77761595_77762381_77801420
transcript_65708.known	chr18	-	2571	2	FSM	ENSMUSG00000047466.11	ENSMUST00000235641.2	2571	2	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATCCCATTGTAGAGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	77801683	77760072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_77762381_77801420
transcript_65714.known	chr18	+	2471	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	0	0	0	0	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	20	True	ATTAAA	-22	NA	77861428	77870569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
transcript_65727.known	chr18	-	1003	9	FSM	ENSMUSG00000041840.9	ENSMUST00000048192.9	1003	9	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_6	88.5180066427165	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTGTTATCTGTTGCT	NA	False	NA	-1	True	AATACA	-19	NA	77855480	77845267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
transcript_65738.nic	chr18	-	859	8	ISM	ENSMUSG00000041840.9	ENSMUST00000048192.9	1003	9	-65	925	-59	-924	5prime_fragment	FALSE	canonical	3	1190	junction_5	74.5489840333734	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAGAGGCAAAGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	77855545	77846192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr18_-_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
transcript_65747.known	chr18	-	6882	3	FSM	ENSMUSG00000041840.9	ENSMUST00000236575.2	6882	3	0	0	0	0	multi-exon	FALSE	canonical	3	1297	junction_2	61	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855486	77845268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_77851909_77854563_77854739_77855419
transcript_6575.known	chr1	+	2859	14	FSM	ENSMUSG00000026554.16	ENSMUST00000192704.6	2859	14	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_1	115.931269170995	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	15	True	ATTAAA	-17	NA	171975708	172023033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
transcript_65751.nic	chr18	+	3028	15	NIC	ENSMUSG00000025429.10	novel	1056	14	NA	NA	-16	878	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	7.97860659923186	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTGTATTCTTGTGT	2194	False	NA	NA	False	AATAAA	-20	NA	77877597	77971457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_77877687_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
transcript_65757.known	chr18	+	3147	3	FSM	ENSMUSG00000056214.10	ENSMUST00000070219.9	3147	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	5.5	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTACCGTGTGTTATTGA	NA	False	NA	20	True	AATAAA	-14	NA	80090104	80162854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80090358_80123039_80123263_80160183
transcript_65764.known	chr18	-	5012	4	FSM	ENSMUSG00000053950.11	ENSMUST00000066743.11	5012	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_3	18.0800688297608	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTCTTAAGTCAAGCAGG	5936	False	NA	87	True	AATAAA	-29	NA	80194697	80169525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_80174210_80180698_80180789_80185863_80185985_80194580
transcript_65769.known	chr18	-	1377	6	FSM	ENSMUSG00000024570.8	ENSMUST00000025462.7	1377	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	30.0026665481587	571	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTTGTGTATACGCAC	NA	False	NA	-3	True	AATAAA	-20	NA	80243873	80235479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_80236098_80236446_80236515_80238233_80238319_80240464_80240578_80240878_80241099_80243600
transcript_65780.nnic	chr18	+	845	5	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-22	193	combination_of_known_splicesites	FALSE	canonical	3	288	junction_3	1074.60606154069	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80249987	80265746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_+_80250117_80250368_80250559_80253276_80253346_80261918_80262023_80265393
transcript_65786.known	chr18	+	1683	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	0	0	0	0	multi-exon	FALSE	canonical	3	1096	junction_3	900.996608699993	2167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACGTTTGTTGTGGG	NA	False	NA	NA	False	AATAAA	-12	NA	80250012	80255947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
transcript_65790.known	chr18	+	4078	4	FSM	ENSMUSG00000057130.13	ENSMUST00000145963.9	4078	4	0	0	0	0	multi-exon	FALSE	canonical	3	2407	junction_2	310.116465577406	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGTCATGATGTTTT	NA	False	NA	7	True	NA	NA	NA	80250009	80269070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80250117_80250368_80250559_80261918_80262023_80265393
transcript_65794.known	chr18	+	1650	4	FSM	ENSMUSG00000024571.16	ENSMUST00000025463.14	1650	4	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	503.796475661441	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAAAGGAGTACACGTT	NA	False	NA	NA	False	AATAAA	-3	NA	80250081	80255938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80250162_80250368_80250559_80253276_80253346_80254627
transcript_65796.known	chr18	+	1755	4	FSM	ENSMUSG00000024571.16	ENSMUST00000127234.8	1755	4	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	451.424658411813	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGGGAATTCATTG	NA	False	NA	NA	False	AATAAA	-21	NA	80250109	80255956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80250277_80250368_80250559_80253276_80253346_80254627
transcript_65798.known	chr18	+	517	4	FSM	ENSMUSG00000057130.13	ENSMUST00000025464.8	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	1036.43309265748	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCACTGGCAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	80250077	80265417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80250277_80250368_80250559_80261918_80262023_80265393
transcript_65801.known	chr18	+	968	3	FSM	ENSMUSG00000024571.16	ENSMUST00000145116.8	968	3	0	0	0	0	multi-exon	FALSE	canonical	3	1244	junction_2	916.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTCCTGTACGAGACT	NA	False	NA	NA	False	TTTAAA	-12	NA	80250044	80253982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80250117_80250368_80250559_80253276
transcript_65806.known	chr18	+	679	2	FSM	ENSMUSG00000024571.16	ENSMUST00000126177.8	679	2	0	0	0	0	multi-exon	FALSE	canonical	3	3077	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAGTCAGGACTGTATA	NA	False	NA	NA	False	NA	NA	NA	80250060	80250991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80250117_80250368
transcript_65808.known	chr18	-	1104	4	FSM	ENSMUSG00000078963.4	ENSMUST00000237192.2	1104	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.9901932498329	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACCTTATGTGTATG	NA	False	NA	NA	False	AATACA	-14	NA	80280048	80272972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_80273777_80276629_80276725_80278663_80278731_80279910
transcript_65811.known	chr18	+	1989	6	FSM	ENSMUSG00000034006.18	ENSMUST00000091798.10	1989	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	14.1279864099595	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGTGTAAGTAAGTCAG	NA	False	NA	14	True	AATAAA	-14	NA	80299520	80335939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80315676_80315731_80326490_80326708_80334790
transcript_65812.known	chr18	+	1864	5	FSM	ENSMUSG00000034006.18	ENSMUST00000129043.8	1864	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	11.0989864402116	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTCATGTGGTGTAAG	NA	False	NA	6	True	AATAAA	-39	NA	80299498	80335931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80299534_80299996_80300334_80306634_80306769_80326490_80326708_80334790
transcript_65813.known	chr18	+	1911	5	FSM	ENSMUSG00000034006.18	ENSMUST00000070135.8	1911	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	7.26291952316697	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATGCTTCATGTGGTG	NA	False	NA	2	True	AATAAA	-35	NA	80299532	80335927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80326490_80326708_80334790
transcript_65815.known	chr18	+	3258	4	FSM	ENSMUSG00000034006.18	ENSMUST00000134545.3	3258	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	14.3527000944073	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTGCCCTCTTATCTG	NA	False	NA	NA	False	AATAAA	-19	NA	80299521	80318366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80315676
transcript_65816.known	chr18	+	2356	5	FSM	ENSMUSG00000034006.18	ENSMUST00000140594.8	2356	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	14.7732867026942	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGCTTCATGTGGTGTA	NA	False	NA	4	True	AATAAA	-37	NA	80299521	80335929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_80300334_80306634_80306769_80315676_80315731_80326490_80326708_80334790
transcript_65818.nnic	chr18	-	3864	14	NNC	ENSMUSG00000033323.15	novel	3713	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	63.2426528230329	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTGTGTTCTCTGGTG	NA	False	NA	-9	True	AATAAA	-12	NA	80512907	80451179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_-_80451997_80463657_80463846_80477380_80477544_80485226_80485387_80489100_80489311_80490638_80490781_80492455_80493464_80494369_80494537_80495519_80495611_80499168_80499320_80501911_80502041_80502416_80502511_80503144_80503229_80512447
transcript_65820.known	chr18	-	3713	13	FSM	ENSMUSG00000033323.15	ENSMUST00000036229.13	3713	13	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_8	21.1126278694898	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTCTCTGGTGTGTCAC	NA	False	NA	-3	True	AATAAA	-18	NA	80512910	80451173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_80451997_80463657_80463846_80477380_80477544_80489100_80489311_80490638_80490781_80492455_80493464_80494369_80494537_80495519_80495611_80499168_80499320_80501911_80502041_80502416_80502511_80503144_80503229_80512447
transcript_65828.nnic	chr18	-	3552	12	NIC	ENSMUSG00000033323.15	novel	3713	13	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	54.0249406744333	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTGTGTTCTCTGGTG	NA	False	NA	-9	True	AATAAA	-12	NA	80512918	80451179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr18_-_80451997_80463657_80463846_80489100_80489311_80490638_80490781_80492455_80493464_80494369_80494537_80495519_80495611_80499168_80499320_80501911_80502041_80502416_80502511_80503144_80503229_80512447
transcript_65838.known	chr18	-	5357	30	FSM	ENSMUSG00000024566.11	ENSMUST00000091790.5	5357	30	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	27.0288523341592	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCTGGTCTTGGTCTCA	9821	False	NA	NA	False	CATAAA	-24	NA	80977198	80777355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_80779365_80780026_80780060_80781867_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80879569_80879647_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920589_80935029_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
transcript_65840.known	chr18	-	5150	29	FSM	ENSMUSG00000024566.11	ENSMUST00000225980.2	5150	29	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_24	14.8266772117982	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTCAGTCCTACAAGGGA	9746	False	NA	NA	False	AATAAA	-17	NA	80977273	80777604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_80779365_80781867_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80879569_80879647_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920589_80935029_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
transcript_65853.known	chr18	-	4326	28	FSM	ENSMUSG00000024566.11	ENSMUST00000225235.2	4326	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	33.9072809836428	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGACCTGAGCGCCT	9821	False	NA	-30	True	AATAAA	-24	NA	80977198	80778289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_80779365_80781867_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797618_80799668_80799759_80801509_80801609_80805276_80805448_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920589_80935029_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
transcript_65854.known	chr18	-	7079	4	FSM	ENSMUSG00000024565.11	ENSMUST00000057950.9	7079	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	9.39266853573691	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	81029986	81009590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_81013120_81014395_81014737_81014952_81017845_81029669
transcript_65856.known	chr18	-	4214	3	FSM	ENSMUSG00000024565.11	ENSMUST00000238808.2	4214	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	5.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAGGAAAG	NA	False	NA	NA	False	TTTAAA	-31	NA	81029751	81012436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_81013120_81014395_81017845_81029669
transcript_65858.known	chr18	+	4797	4	FSM	ENSMUSG00000041607.18	ENSMUST00000091789.11	4797	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.02768199119819	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGACTTTTTAAGTTGT	NA	False	NA	35	True	ATTAAA	-35	NA	82493270	82576828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_82493520_82518851_82518928_82540174_82540263_82572444
transcript_65860.nnic	chr18	-	412	3	Antisense	novelGene_ENSMUSG00000097738.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	20	junction_2	4.5	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTTCCTATATTTTC	NA	False	NA	-14	True	AATAAA	-17	NA	82884001	82873436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr18_-_82873610_82875076_82875202_82883887
transcript_65862.known	chr18	+	7703	6	FSM	ENSMUSG00000058881.14	ENSMUST00000071233.7	7703	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	92.9184588765871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTTTGACCTGTGGTT	NA	False	NA	52	True	NA	NA	NA	82932756	83023439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_82932849_82973648_82975575_83004868_83006324_83011194_83011315_83012594_83012663_83019397
transcript_65867.nnic	chr18	+	3569	5	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15804	1023	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	87.4885706821183	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAATTTTACATGTACA	NA	False	NA	NA	False	AATATA	-17	NA	82990128	83020848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_82990604_83004868_83006324_83011194_83011315_83012594_83012663_83019397
transcript_65868.nnic	chr18	+	3777	5	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15642	1023	at_least_one_novel_splicesite	FALSE	canonical	3	187	junction_2	10.2713192920871	121	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAATTTTACATGTACA	NA	False	NA	NA	False	AATATA	-17	NA	82990290	83020848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_82990974_83004868_83006324_83011194_83011315_83012594_83012663_83019397
transcript_65870.nnic	chr18	+	3042	4	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15027	1023	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	94.6232294711798	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAATTTTACATGTACA	NA	False	NA	NA	False	AATATA	-17	NA	82990905	83020848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_82990974_83004868_83006324_83012594_83012663_83019397
transcript_65873.nnic	chr18	+	3075	3	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15128	1023	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	87	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAATTTTACATGTACA	NA	False	NA	NA	False	AATATA	-17	NA	82990804	83020848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr18_+_82990974_83004868_83006324_83019397
transcript_65876.known	chr18	+	3430	2	FSM	ENSMUSG00000049090.4	ENSMUST00000060223.4	3430	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACACTTCTTTCTGTCCC	4254	False	NA	NA	False	NA	NA	NA	84106187	84115653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_84106499_84112534
transcript_65878.known	chr18	-	7909	9	FSM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	5.699506557589	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGTGGTGTACTAAGTGC	NA	False	NA	NA	False	AATAAA	-20	NA	84607629	84225825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_84228207_84333930_84334110_84361070_84361192_84369024_84369109_84372649_84372817_84450484_84450560_84570994_84571110_84576451_84581172_84607562
transcript_65886.known	chr18	-	2124	12	FSM	ENSMUSG00000024644.18	ENSMUST00000025546.17	2124	12	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_11	64.2627612178223	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCGTGGTCTGACTTTCT	NA	False	NA	2	True	AATAAA	-25	NA	84703827	84685589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962_84700053_84703727
transcript_65892.known	chr18	-	2152	11	FSM	ENSMUSG00000024644.18	ENSMUST00000168419.3	2152	11	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_9	38.6638073655454	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGCCGTGGTCTGACT	NA	False	NA	-2	True	AATAAA	-21	NA	84700184	84685593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962
transcript_65893.known	chr18	+	833	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_4	54.2425110038243	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTGTCTGTTTGGTGT	NA	False	NA	19	True	AATATA	-24	NA	84869462	84897996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
transcript_65895.known	chr18	+	773	3	FSM	ENSMUSG00000024646.15	ENSMUST00000159846.2	773	3	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	30	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACGTAAGCCGTATCTTGA	NA	False	NA	NA	False	AGTAAA	-25	NA	84869531	84891707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_84869733_84889629_84889759_84891264
transcript_65896.known	chr18	+	1182	6	FSM	ENSMUSG00000024646.15	ENSMUST00000235725.2	1182	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	500.801996801131	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATACCATATGTGTCTGTC	5046	False	NA	9	True	AATATA	-14	NA	84856828	84897986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_84857412_84858293_84858340_84889629_84889759_84891264_84891295_84895951_84895987_84897627
transcript_65900.known	chr18	+	1437	10	FSM	ENSMUSG00000034391.13	ENSMUST00000037718.10	1437	10	0	0	0	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGAGTTAGCAGTAGGG	1176	False	NA	-12	True	NA	NA	NA	84953282	84999501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
transcript_65902.known	chr18	+	1557	10	FSM	ENSMUSG00000034391.13	ENSMUST00000223789.3	1557	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	268.357187805569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGAGTTAGCAGTAGGG	NA	False	NA	-12	True	NA	NA	NA	84970240	84999501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_84970384_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
transcript_65903.known	chr18	-	2418	6	FSM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	6.15142259969188	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	84969649	84964315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_84965871_84965958_84966065_84966147_84966222_84967318_84967417_84967514_84967578_84969127
transcript_65910.known	chr18	+	1866	1	FSM	ENSMUSG00000069324.7	ENSMUST00000091776.7	1866	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AATAAA	-22	NA	87774409	87776275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_87774400_87776300
transcript_65911.known	chr18	-	1004	4	FSM	ENSMUSG00000056153.16	ENSMUST00000145120.3	1004	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	77.821733611005	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAGCCAGAGCCGCGCCC	NA	False	NA	NA	False	NA	NA	NA	88912434	88888373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_88889043_88905115_88905177_88905332_88905458_88912285
transcript_65912.known	chr18	-	2921	3	FSM	ENSMUSG00000056153.16	ENSMUST00000123826.2	2921	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	105.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATCTTTACAGTGTGCT	NA	False	NA	NA	False	AATAGA	-35	NA	88912340	88886297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_88889043_88905336_88905458_88912285
transcript_65913.known	chr18	+	7271	49	FSM	ENSMUSG00000023066.11	ENSMUST00000023828.9	7271	49	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_17	5.75166038828982	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAGTGTATTTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	88989913	89149140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_88990203_88990495_88990684_88991641_88991820_88992453_88992544_88993811_88993903_88995796_88995912_88997689_88997841_89001933_89002100_89004017_89004200_89007558_89007675_89013640_89013812_89027365_89027579_89028975_89029089_89031095_89031223_89032665_89032792_89033248_89033366_89035302_89035443_89038220_89038393_89039787_89039888_89045082_89045172_89047015_89047134_89055114_89055212_89056010_89056080_89060259_89060449_89060982_89061223_89064139_89064285_89066489_89066645_89071643_89071864_89078484_89078614_89078875_89078987_89082224_89082384_89083970_89084043_89091668_89091859_89093550_89093643_89100017_89100109_89108550_89108741_89109939_89110031_89113616_89113771_89119754_89119893_89121967_89122186_89126172_89126279_89127374_89127473_89128797_89128876_89131448_89131576_89133568_89133769_89138955_89139224_89146879_89146984_89147873_89147944_89148722
transcript_65917.known	chr18	+	3260	13	FSM	ENSMUSG00000023066.11	ENSMUST00000235272.2	3260	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_9	4.44331582892276	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	88989931	89030303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_88990203_88990495_88990684_88991641_88991820_88992453_88992544_88993811_88993903_88995796_88995912_88997689_88997841_89001933_89002100_89004017_89004200_89007558_89007675_89013640_89013812_89027365_89027579_89028975
transcript_65918.known	chr18	-	1323	1	FSM	ENSMUSG00000091697.3	ENSMUST00000163304.3	1323	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGATTATAAAGAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	90330314	90328991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_-_90329000_90330300
transcript_65919.known	chr18	+	4611	16	FSM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_13	15.4033185457622	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTACCTTTAATATGTGT	4742	False	NA	25	True	AATAAA	-25	NA	90528277	90561391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062
transcript_65930.known	chr18	+	1968	13	FSM	ENSMUSG00000024614.8	ENSMUST00000237852.2	1968	13	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	15.6549158058703	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAATAGTAAAA	4860	False	NA	NA	False	AATAAA	-9	NA	90528395	90553565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505
transcript_65936.known	chr19	-	5569	15	FSM	ENSMUSG00000024831.15	ENSMUST00000025751.11	5569	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	8.84936294259626	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAGCTGAGGAGTACTC	NA	False	NA	NA	False	NA	NA	NA	3333017	3309075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3311636_3311974_3312145_3314810_3315666_3316335_3316460_3317241_3317337_3318297_3318417_3318659_3318843_3321525_3321701_3322887_3323036_3324355_3324557_3326755_3326920_3329532_3329631_3329806_3329997_3331418_3331589_3332700
transcript_65945.nic	chr19	-	2862	13	ISM	ENSMUSG00000024831.15	ENSMUST00000119292.8	3513	14	-68	3894	-30	0	5prime_fragment	FALSE	canonical	3	46	junction_1	6.67499479816693	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAAGGTAAAGCCACATC	NA	False	NA	NA	False	AAAAAG	-10	NA	3333047	3314817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_3315666_3316335_3316460_3317241_3317337_3318297_3318417_3318659_3318843_3321525_3321701_3322887_3323036_3324355_3324557_3326755_3326920_3329532_3329631_3329806_3329997_3331418_3331589_3332700
transcript_65951.known	chr19	+	802	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	0	0	0	0	multi-exon	FALSE	canonical	3	1715	junction_6	72.3058703625708	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGACTTGCTGTTAAA	7371	False	NA	13	True	NA	NA	NA	3333059	3341201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3340976
transcript_65954.known	chr19	+	674	6	FSM	ENSMUSG00000024829.13	ENSMUST00000139844.8	674	6	0	0	0	0	multi-exon	FALSE	canonical	3	1812	junction_5	40.5935955539787	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTGTGCCAGCATTGTG	7366	False	NA	NA	False	NA	NA	NA	3333054	3339179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983
transcript_6596.known	chr1	+	2584	10	FSM	ENSMUSG00000026554.16	ENSMUST00000195394.6	2584	10	0	0	0	0	multi-exon	TRUE	canonical	3	418	junction_1	56.719147810903	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAATAAATAAAAATACA	NA	False	NA	NA	False	TTTAAA	-5	NA	171975655	172016148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919
transcript_65962.known	chr19	+	678	2	FSM	ENSMUSG00000024829.13	ENSMUST00000155870.2	678	2	0	0	0	0	multi-exon	FALSE	canonical	3	1903	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGAGCTCACCACCCTG	7371	False	NA	NA	False	NA	NA	NA	3333059	3335325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3333172_3334759
transcript_65965.known	chr19	+	4317	19	FSM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	0	0	0	0	multi-exon	TRUE	canonical	3	230	junction_1	37.3718386086055	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATCTGTCCCTGTCTCC	NA	False	NA	18	True	AATAAA	-20	NA	3373284	3435733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3373375_3399188_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412223_3414477_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754
transcript_65966.known	chr19	+	2513	2	FSM	ENSMUSG00000024900.6	ENSMUST00000235968.2	2513	2	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAACAAAATAGA	NA	False	NA	NA	False	NA	NA	NA	3373347	3401674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3373375_3399188
transcript_65967.known	chr19	+	2234	9	FSM	ENSMUSG00000024905.16	ENSMUST00000025840.16	2234	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	4.715334028465	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGGACTCCACAGAGAC	NA	False	NA	NA	False	AATATA	-16	NA	3438856	3457823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3439334_3442102_3442262_3443924_3444046_3445919_3445994_3446962_3447055_3452485_3452577_3454048_3454187_3454932_3455109_3456917
transcript_65970.known	chr19	+	2013	5	FSM	ENSMUSG00000024905.16	ENSMUST00000151341.8	2013	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	2.48746859276655	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTTTCTTTCATAGAGAA	NA	False	NA	NA	False	AATAAA	-19	NA	3438884	3448172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3439334_3442102_3442262_3443924_3444046_3445919_3445994_3446962
transcript_65972.nic	chr19	-	4920	24	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_9	100.351876189837	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	3625763	3504927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523816_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
transcript_65973.known	chr19	-	4952	24	FSM	ENSMUSG00000024908.16	ENSMUST00000113997.9	4952	24	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_9	67.9031613363524	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625749	3504932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
transcript_65974.nic	chr19	-	5044	23	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	-286	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_9	114.748638336148	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	3626035	3504927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523816_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
transcript_65976.nic	chr19	-	4826	23	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	145	junction_22	86.8173369782787	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	3625766	3504927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
transcript_65979.known	chr19	-	4841	23	FSM	ENSMUSG00000024908.16	ENSMUST00000025846.16	4841	23	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_9	88.0225482945391	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	3625720	3504927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
transcript_65980.known	chr19	-	4633	22	FSM	ENSMUSG00000024908.16	ENSMUST00000172362.3	4633	22	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_9	119.716123030186	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTTCCTCGTGAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	3625716	3504932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523816_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
transcript_65981.nic	chr19	-	4728	22	NIC	ENSMUSG00000024908.16	novel	4841	23	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	106	junction_9	104.600590087781	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	3625755	3504927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
transcript_65992.known	chr19	-	5161	23	FSM	ENSMUSG00000024913.17	ENSMUST00000025856.17	5161	23	0	0	0	0	multi-exon	TRUE	canonical	2	72	junction_10	15.3130555220533	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCATTCCTTTGTGCCT	7827	False	NA	0	True	TATAAA	-20	NA	3736556	3634827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038_3660239_3662197_3662522_3664225_3664411_3665652_3665880_3670014_3670305_3672509_3672727_3678272_3678445_3680073_3680471_3697527_3697660_3699403_3699601_3702132_3702331_3709243_3709641_3736354
transcript_65997.known	chr19	-	2759	8	FSM	ENSMUSG00000024913.17	ENSMUST00000176867.2	2759	8	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_7	11.3101002359369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAACAAAAGAAGACAAAA	7819	False	NA	NA	False	NA	NA	NA	3736564	3671670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3672727_3678272_3678445_3680073_3680471_3697527_3697660_3699403_3699601_3702132_3702331_3709243_3709641_3736354
transcript_66.known	SIRV1	-	973	3	FSM	SIRV1A	SIRV106	973	3	0	0	0	0	multi-exon	FALSE	canonical	2	497	junction_2	204	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV1_-_1485_7552_7809_10553
transcript_66000.known	chr19	-	571	3	FSM	ENSMUSG00000118249.2	ENSMUST00000236650.2	571	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGACTTTGGTGGTATC	NA	False	NA	NA	False	NA	NA	NA	3758176	3739685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3740001_3756645_3756786_3758060
transcript_66001.known	chr19	+	1882	4	FSM	ENSMUSG00000035372.3	ENSMUST00000039048.2	1882	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	53.9897109539298	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGTGTGGGTCTGTGTG	NA	False	NA	11	True	ATTAAA	-23	NA	3758332	3767881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3758437_3764403_3764626_3765637_3765803_3766490
transcript_66002.known	chr19	+	1875	4	FSM	ENSMUSG00000035372.3	ENSMUST00000235837.2	1875	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	139.776806214606	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGTGGGTCTGTGT	NA	False	NA	10	True	ATTAAA	-22	NA	3758410	3767880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3758509_3764403_3764626_3765637_3765803_3766490
transcript_66003.known	chr19	+	2193	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237955.2	2193	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	122.806984962402	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCCAGCTTGTGTGGG	NA	False	NA	3	True	ATTAAA	-15	NA	3758370	3767873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3758437_3764046_3764626_3765637_3765803_3766490
transcript_66019.known	chr19	+	2683	13	FSM	ENSMUSG00000024843.16	ENSMUST00000128694.8	2683	13	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	76.2468123195251	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTCAGACTGTTACCCT	5720	False	NA	2	True	AATAAA	-13	NA	3901772	3944365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3902414_3914647_3914760_3921002_3921063_3925734_3925789_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
transcript_66033.known	chr19	+	2319	12	FSM	ENSMUSG00000024843.16	ENSMUST00000025760.13	2319	12	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	51.157187679149	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTCAGACTGTTACCC	6023	False	NA	1	True	AATAAA	-12	NA	3902075	3944364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3902414_3914647_3914760_3925734_3925789_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
transcript_66046.known	chr19	+	2549	11	FSM	ENSMUSG00000024843.16	ENSMUST00000072055.13	2549	11	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	49.9220392211696	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGACTGTTACCCTTCAT	5744	False	NA	6	True	AATAAA	-17	NA	3901796	3944369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3902414_3914647_3914760_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
transcript_66048.known	chr19	+	2975	10	FSM	ENSMUSG00000045098.20	ENSMUST00000113970.8	2975	10	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	36.6093828625975	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTCTTGAGTCTGG	NA	False	NA	56	True	AATAAA	-15	NA	3818032	3858835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224
transcript_66051.known	chr19	+	3933	10	FSM	ENSMUSG00000045098.20	ENSMUST00000176262.8	3933	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	99.7442408374885	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGTGTAAGCACTGCAT	NA	False	NA	NA	False	AATAAA	-16	NA	3818165	3866688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224_3857422_3864114
transcript_66053.known	chr19	+	1721	10	FSM	ENSMUSG00000045098.20	ENSMUST00000237440.2	1721	10	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	94.5832966226067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTTAGAATTGACCAAA	NA	False	NA	4	True	AATAAA	-14	NA	3818145	3855463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3818341_3832219_3832280_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
transcript_66056.known	chr19	+	1283	9	FSM	ENSMUSG00000045098.20	ENSMUST00000005518.16	1283	9	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_4	20.1242235875077	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCAGACTCTCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3818117	3855057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
transcript_66068.known	chr19	+	793	6	FSM	ENSMUSG00000045098.20	ENSMUST00000152935.8	793	6	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	104.895376447201	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCACAAGGAAAAATTGTG	NA	False	NA	NA	False	NA	NA	NA	3818148	3854502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3818341_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394
transcript_66070.known	chr19	+	1627	3	FSM	ENSMUSG00000024843.16	ENSMUST00000125411.8	1627	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	74	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAAAAAACATTTT	5757	False	NA	NA	False	NA	NA	NA	3901809	3921913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3902414_3914647_3914760_3921002
transcript_66071.known	chr19	+	3605	2	FSM	ENSMUSG00000024843.16	ENSMUST00000154467.8	3605	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	5779	False	NA	NA	False	NA	NA	NA	3901831	3917670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3902414_3914647
transcript_66074.known	chr19	-	3041	20	FSM	ENSMUSG00000001750.17	ENSMUST00000126070.9	3041	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	15.1306407031772	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	0	True	AATAAA	-20	NA	3956991	3946049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3956523
transcript_66075.known	chr19	-	2688	20	FSM	ENSMUSG00000001750.17	ENSMUST00000001801.11	2688	20	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_12	8.58007741992203	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	0	True	AATAAA	-20	NA	3957133	3946049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
transcript_66086.nic	chr19	-	3168	18	NIC	ENSMUSG00000001750.17	novel	2688	20	NA	NA	-5	0	intron_retention	FALSE	canonical	3	39	junction_11	8.75502821418308	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	0	True	AATAAA	-20	NA	3957138	3946049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952557_3952630_3952725_3952881_3952965_3953045_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
transcript_66095.known	chr19	-	1005	7	FSM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	705.446824517782	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGTGTTGTTCCATTT	NA	False	NA	-1	True	CATAAA	-22	NA	3962488	3958862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962202
transcript_66096.known	chr19	-	977	7	FSM	ENSMUSG00000059734.8	ENSMUST00000235847.2	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	709.089557108268	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962734	3958869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962469
transcript_66098.known	chr19	-	780	7	FSM	ENSMUSG00000059734.8	ENSMUST00000237341.2	780	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	307.096076171611	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTGTTGTGTTGTTCC	NA	False	NA	-5	True	CATAAA	-18	NA	3962774	3958866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
transcript_6610.known	chr1	-	2501	4	FSM	ENSMUSG00000013698.13	ENSMUST00000013842.12	2501	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	8.37987005998436	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACTGATTCTAGAATCT	NA	False	NA	-4	True	AATAAA	-20	NA	172034371	172024294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_172026258_172026677_172026834_172027974_172028149_172034163
transcript_66112.known	chr19	-	1924	10	FSM	ENSMUSG00000024885.10	ENSMUST00000051803.8	1924	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	3.58322566591047	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACAGGTGTCTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	3979808	3963490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3979695
transcript_66113.nnic	chr19	-	1969	10	NNC	ENSMUSG00000024885.10	novel	1924	10	NA	NA	-1065	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	2.58198889747161	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACAGGTGTCTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	3980873	3963490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3980715
transcript_66117.known	chr19	+	2266	11	FSM	ENSMUSG00000036908.18	ENSMUST00000162708.7	2266	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	6.90579466824782	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGTGTAGGTTGTGTTCT	5185	False	NA	NA	False	AATAAA	-20	NA	3985185	3999340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_3985353_3985761_3985904_3986268_3986423_3991519_3991682_3991884_3992018_3992348_3992443_3992693_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
transcript_66121.nic	chr19	+	2125	10	NIC	ENSMUSG00000036908.18	novel	2266	11	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	7.99691298464293	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGGTGTAGGTTGTGTTC	5163	False	NA	NA	False	AATAAA	-19	NA	3985163	3999339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_3985353_3985761_3985904_3986268_3986423_3991884_3992018_3992348_3992443_3992693_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
transcript_66125.known	chr19	+	1284	8	FSM	ENSMUSG00000024866.11	ENSMUST00000236510.2	1284	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	10.3332236114429	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGACAGTTCTTGTTCTT	NA	False	NA	3	True	TATAAA	-17	NA	4036569	4040005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4036612_4036822_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
transcript_66126.nic	chr19	+	1345	8	NIC	ENSMUSG00000024866.11	novel	1284	8	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	12.795088343356	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACAGTTCTTGTTCTTTG	NA	False	NA	5	True	TATAAA	-19	NA	4036505	4040007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_4036612_4036827_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
transcript_66127.known	chr19	+	1142	7	FSM	ENSMUSG00000024866.11	ENSMUST00000235612.2	1142	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	13.4752860204648	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGACAGTTCTTGTTCTT	NA	False	NA	3	True	TATAAA	-17	NA	4036582	4040005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4036612_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
transcript_66131.known	chr19	+	787	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	10.4243305140746	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3513	False	NA	9	True	ATTAAA	-18	NA	4050579	4052103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
transcript_66133.known	chr19	+	1082	3	FSM	ENSMUSG00000110949.2	ENSMUST00000122924.2	1082	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTCTGGCATCTTCCGT	3564	False	NA	7	True	ATTAAA	-16	NA	4050630	4052101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4051329_4051627_4051706_4051795
transcript_66136.known	chr19	-	1661	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	1859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAACTTTGCTTTTC	6426	False	NA	3	True	AATAAA	-30	NA	4062806	4057496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
transcript_66138.known	chr19	-	1619	10	FSM	ENSMUSG00000037916.15	ENSMUST00000237862.2	1619	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	453.44895039826	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCTCTTTTTGTGGCAC	6538	False	NA	NA	False	NA	NA	NA	4062694	4057383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062593
transcript_6614.known	chr1	+	4656	13	FSM	ENSMUSG00000026554.16	ENSMUST00000074144.11	4656	13	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_9	39.6410106105057	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTGTGGTATGTG	NA	False	NA	16	True	AGTAAA	-16	NA	171975744	172023956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
transcript_6615.known	chr1	-	6227	23	FSM	ENSMUSG00000007097.15	ENSMUST00000085913.11	6227	23	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_19	23.4067518690196	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGGGCCTGGGTTCTTG	NA	False	NA	0	True	AATAAA	-28	NA	172125631	172099275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106248_172106437_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
transcript_66164.known	chr19	-	821	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	0	0	0	0	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	1457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4087985	4085406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
transcript_66166.known	chr19	-	670	7	FSM	ENSMUSG00000060803.7	ENSMUST00000237982.2	670	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1372.45627333705	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTATGTGGCTCGCCTCA	NA	False	NA	NA	False	NA	NA	NA	4087925	4085572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087472_4087584_4087621_4087862
transcript_66171.nic	chr19	-	952	8	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	1378.94109033426	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4096074	4090286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092566_4092672_4095923
transcript_66173.known	chr19	-	797	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	961.706469424706	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4092263	4090284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
transcript_66176.nic	chr19	-	975	6	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-14	0	intron_retention	FALSE	canonical	3	1174	junction_5	1038.62948157656	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092277	4090286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_4090540_4090707_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
transcript_66178.known	chr19	-	708	7	FSM	ENSMUSG00000058216.14	ENSMUST00000189808.7	708	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	28.8236978119664	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9073	False	NA	NA	False	NA	NA	NA	4109446	4107476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109258_4109295_4109423
transcript_66184.known	chr19	+	1089	4	FSM	ENSMUSG00000024856.11	ENSMUST00000172914.2	1089	4	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_1	272.960721635102	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTCTGTGTGTGGTTCC	7095	False	NA	36	True	AATAAA	-25	NA	4147400	4149019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4147734_4147816_4147918_4148004_4148138_4148497
transcript_66185.known	chr19	+	843	4	FSM	ENSMUSG00000024856.11	ENSMUST00000174799.2	843	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	272.140078309356	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	7096	False	NA	27	True	AATAAA	-16	NA	4147401	4149010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4147508_4147816_4147908_4148004_4148138_4148497
transcript_66188.known	chr19	+	386	3	FSM	ENSMUSG00000024856.11	ENSMUST00000174149.8	386	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	297	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAGTTCAGTAAGGATG	7096	False	NA	NA	False	NA	NA	NA	4147401	4148193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4147508_4147816_4147908_4148004
transcript_6619.known	chr1	-	3583	22	FSM	ENSMUSG00000007097.15	ENSMUST00000131751.7	3583	22	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_18	23.2329229216428	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTCCACAGGTCCCGC	NA	False	NA	-14	True	AATAAA	-18	NA	172125631	172102109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
transcript_66192.known	chr19	+	4206	24	FSM	ENSMUSG00000024851.15	ENSMUST00000049658.14	4206	24	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	2.52323793539946	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGGCCTTCCTGTCTGG	1307	False	NA	NA	False	AATAAA	-14	NA	4149997	4163965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4150214_4151143_4151263_4152672_4152888_4152974_4153097_4153260_4153486_4154813_4155141_4155229_4155326_4155414_4155523_4156563_4156626_4156711_4156963_4157785_4157976_4158085_4158194_4158422_4158581_4158664_4158868_4159825_4159997_4160494_4160660_4160841_4160991_4161078_4161190_4161581_4161699_4161865_4162015_4162100_4162251_4162326_4162511_4162747_4162877_4163484
transcript_66194.known	chr19	-	1378	7	FSM	ENSMUSG00000024847.16	ENSMUST00000117831.8	1378	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	105.801307490346	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTTGAAGGCTGGTCA	9616	False	NA	-3	True	TATAAA	-35	NA	4175858	4164445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335_4171546_4175729
transcript_66197.known	chr19	-	1261	6	FSM	ENSMUSG00000024847.16	ENSMUST00000025767.14	1261	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	15.3310143173894	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTTGCAGAACTAATC	3902	False	NA	-21	True	TATAAA	-17	NA	4171575	4164463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335
transcript_66203.known	chr19	+	937	7	FSM	ENSMUSG00000024845.20	ENSMUST00000148807.11	937	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	194.337907321815	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4390	False	NA	NA	False	AATAAA	-24	NA	4175978	4181734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
transcript_66206.known	chr19	+	1488	7	FSM	ENSMUSG00000024845.20	ENSMUST00000139987.10	1488	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	239.625691907655	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAATCTGAGCTCACAG	4371	False	NA	NA	False	AATAAA	-28	NA	4175959	4182304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4176200_4177055_4177121_4177575_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
transcript_66208.known	chr19	+	874	6	FSM	ENSMUSG00000024845.20	ENSMUST00000140405.10	874	6	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	248.896283620306	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4400	False	NA	NA	False	AATAAA	-16	NA	4175988	4181726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181227_4181282_4181360
transcript_66209.known	chr19	+	1615	6	FSM	ENSMUSG00000024845.20	ENSMUST00000130619.11	1615	6	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	76.3952878127964	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAACCGAGAATCTTT	4371	False	NA	NA	False	AATAAA	-8	NA	4175959	4182284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181029_4181075_4181227_4181282_4181360
transcript_66215.known	chr19	+	1012	5	FSM	ENSMUSG00000024845.20	ENSMUST00000139718.10	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_3	207.505421615918	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAAGGACAGTTGCACTT	4370	False	NA	NA	False	AATAAA	-15	NA	4175958	4181725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181227_4181282_4181360
transcript_66221.known	chr19	-	4586	15	FSM	ENSMUSG00000024830.18	ENSMUST00000025749.15	4586	15	0	0	0	0	multi-exon	FALSE	canonical	2	38	junction_6	17.8245416691225	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTGCTGCTTTTTCTGG	2749	False	NA	NA	False	AATATA	-7	NA	4213353	4203989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208827_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_66223.known	chr19	-	1979	15	FSM	ENSMUSG00000024830.18	ENSMUST00000130469.8	1979	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	32.5877935079116	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2803	False	NA	-2	True	AGTAAA	-14	NA	4213299	4206793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4209564_4209705_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_66227.known	chr19	-	1418	14	FSM	ENSMUSG00000024830.18	ENSMUST00000137431.8	1418	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	27.2692036454243	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAACCCGGCTCGTTC	2818	False	NA	NA	False	AATAGA	-16	NA	4213284	4206984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208823_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_66235.known	chr19	+	1888	11	FSM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	114.751906302248	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3575	False	NA	18	True	AATAAA	-19	NA	4198617	4204034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
transcript_66239.nic	chr19	+	1920	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	402	junction_1	75.9439925208044	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3536	False	NA	18	True	AATAAA	-19	NA	4198578	4204034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
transcript_66254.nic	chr19	+	2671	9	NIC	ENSMUSG00000024835.16	novel	2814	8	NA	NA	-39	0	intron_retention	TRUE	canonical	3	402	junction_1	84.6935652809586	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTTTGACCTACTGTTGT	3536	False	NA	16	True	AATAAA	-17	NA	4198578	4204032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520
transcript_66262.known	chr19	+	2814	8	FSM	ENSMUSG00000024835.16	ENSMUST00000236023.2	2814	8	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	88.4835970040522	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTTTGACCTACTGTTGT	3613	False	NA	16	True	AATAAA	-17	NA	4198655	4204032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520
transcript_66275.known	chr19	+	927	2	FSM	ENSMUSG00000045826.10	ENSMUST00000061086.9	927	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCACTCTTGTGTCCCG	388	False	NA	NA	False	NA	NA	NA	4204604	4206750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4204703_4205921
transcript_66276.known	chr19	-	457	2	FSM	ENSMUSG00000075289.6	ENSMUST00000237326.2	457	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGAATTTGGGTCAGGA	NA	False	NA	NA	False	NA	NA	NA	4219414	4216166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4216564_4219354
transcript_66277.known	chr19	-	878	2	FSM	ENSMUSG00000040247.7	ENSMUST00000238094.2	878	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTCCTCCACTCTCCA	NA	False	NA	NA	False	AATAAA	-35	NA	4235531	4234375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4235073_4235350
transcript_66283.known	chr19	-	2081	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	5998	False	NA	0	True	AATAAA	-15	NA	4251635	4245194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
transcript_66289.known	chr19	-	2101	10	FSM	ENSMUSG00000024824.8	ENSMUST00000237467.2	2101	10	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_3	31.4889751429854	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAAGGAAAGACAC	6027	False	NA	-24	True	NA	NA	NA	4251606	4245218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
transcript_66309.known	chr19	+	1473	7	FSM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	0	0	0	0	multi-exon	TRUE	canonical	3	3675	junction_3	183.825475806689	4506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATAGCCTCTGTCTCTCTT	3277	False	NA	31	True	AATAAA	-20	NA	4242063	4245419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
transcript_66332.known	chr19	+	938	4	FSM	ENSMUSG00000040385.8	ENSMUST00000237096.2	938	4	0	0	0	0	multi-exon	FALSE	canonical	3	3675	junction_3	178.915249955577	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGTCTGCTATCTGTACT	3385	False	NA	NA	False	NA	NA	NA	4242171	4244241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765
transcript_66336.known	chr19	+	808	3	FSM	ENSMUSG00000040385.8	ENSMUST00000235739.2	808	3	0	0	0	0	multi-exon	FALSE	canonical	3	3983	junction_1	58	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGAAGAATGTAAGCTT	3416	False	NA	NA	False	NA	NA	NA	4242202	4243628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4242271_4242743_4242876_4243020
transcript_66338.known	chr19	+	913	4	FSM	ENSMUSG00000024854.5	ENSMUST00000025773.5	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	2.16024689946929	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGACCTTACATCTCTTA	NA	False	NA	6	True	AATAAA	-18	NA	4281952	4283688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4282243_4282516_4282607_4282801_4282914_4283267
transcript_66339.known	chr19	+	646	3	FSM	ENSMUSG00000040663.10	ENSMUST00000126457.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCAGCCTCCAGCAGCTT	2131	False	NA	NA	False	NA	NA	NA	4264647	4272567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4264687_4270231_4270399_4272127
transcript_66342.known	chr19	-	2705	14	FSM	ENSMUSG00000034616.18	ENSMUST00000113852.6	2705	14	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_12	2.03228381748045	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGACATTTTCCATTT	2350	False	NA	-25	True	AATAAA	-14	NA	4319208	4311723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4312661_4313574_4313846_4313935_4314137_4314341_4314489_4315130_4315178_4315319_4315449_4315637_4315732_4315837_4316027_4316134_4316201_4316402_4316475_4316549_4316666_4317774_4318007_4318572_4318611_4319042
transcript_66345.known	chr19	-	1990	13	FSM	ENSMUSG00000034616.18	ENSMUST00000237501.2	1990	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	2.66145323711189	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTCACTCACTTAACATT	2430	False	NA	NA	False	NA	NA	NA	4319128	4312129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4312661_4313574_4313846_4313935_4314137_4314341_4314489_4315130_4315178_4315319_4315449_4315637_4315732_4315837_4316027_4316134_4316201_4316402_4316475_4316549_4316666_4318572_4318614_4319042
transcript_66349.known	chr19	-	2131	15	FSM	ENSMUSG00000005986.17	ENSMUST00000163858.8	2131	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	5.64240504518043	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGCTTGCTGTCCTGCGTG	858	False	NA	-7	True	AATAAA	-15	NA	4333165	4320209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4320578_4320821_4320914_4320993_4321158_4321246_4321364_4321469_4321628_4322597_4322729_4322827_4322890_4323048_4323131_4323563_4323631_4330564_4330755_4330964_4331109_4331190_4331237_4331945_4332063_4332196_4332333_4332908
transcript_66354.nnic	chr19	-	3372	22	NNC	ENSMUSG00000024858.15	novel	3376	21	NA	NA	-97	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	59.4449763682307	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTCGCTGTCTCAGACT	NA	False	NA	-9	True	TATAAA	-13	NA	4356347	4336029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_4337293_4337380_4337495_4337585_4337723_4337850_4338014_4338439_4338536_4338619_4338687_4339340_4339442_4339700_4339768_4339925_4340034_4340101_4340197_4340422_4340554_4340631_4340711_4340799_4340900_4341266_4341359_4341617_4341670_4342197_4342260_4342389_4342465_4342571_4342674_4342794_4342869_4344877_4344955_4355929_4356062_4356162
transcript_66357.nnic	chr19	-	2337	22	NNC	ENSMUSG00000024858.15	novel	3376	21	NA	NA	-97	-418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	59.4449763682307	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATTATTTGTTTTCCC	NA	False	NA	-29	True	TATAAA	-22	NA	4356347	4337064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_4337293_4337380_4337495_4337585_4337723_4337850_4338014_4338439_4338536_4338619_4338687_4339340_4339442_4339700_4339768_4339925_4340034_4340101_4340197_4340422_4340554_4340631_4340711_4340799_4340900_4341266_4341359_4341617_4341670_4342197_4342260_4342389_4342465_4342571_4342674_4342794_4342869_4344877_4344955_4355929_4356062_4356162
transcript_66358.nnic	chr19	-	2236	22	NNC	ENSMUSG00000024858.15	novel	3376	21	NA	NA	-142	-418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	59.4449763682307	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATTATTTGTTTTCCC	NA	False	NA	-29	True	TATAAA	-22	NA	4356392	4337064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_4337293_4337380_4337495_4337585_4337723_4337850_4338014_4338439_4338536_4338619_4338687_4339340_4339442_4339700_4339768_4339925_4340034_4340101_4340197_4340422_4340554_4340631_4340711_4340799_4340900_4341266_4341359_4341617_4341670_4342197_4342260_4342389_4342465_4342571_4342674_4342794_4342869_4344877_4344955_4355929_4356062_4356308
transcript_6636.known	chr1	+	2278	7	FSM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	44.2329691017408	2347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTTGTGTCTTCTCTT	3743	False	NA	19	True	AATAAA	-19	NA	172139933	172147408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
transcript_66365.known	chr19	-	7242	21	FSM	ENSMUSG00000054611.18	ENSMUST00000075856.11	7242	21	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_20	26.1194850638369	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAGACTTTAAAAA	NA	False	NA	7	True	NA	NA	NA	4447105	4366197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4392874_4393270_4395545_4395673_4398673_4398790_4400204_4400359_4401764_4401859_4402295_4402403_4406775_4406955_4411565_4411613_4412004_4412084_4412803_4412943_4444819_4444921_4446338
transcript_66366.known	chr19	-	8578	21	FSM	ENSMUSG00000054611.18	ENSMUST00000047898.14	8578	21	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_20	31.2315545562497	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCTGATTTCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	4448313	4364446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4392874_4393270_4395545_4395673_4398673_4398790_4400204_4400359_4401764_4401859_4402295_4402403_4406775_4406955_4411565_4411613_4412004_4412084_4412803_4412943_4444819_4444921_4447961
transcript_66369.nic	chr19	-	3697	10	NIC	ENSMUSG00000054611.18	novel	8578	21	NA	NA	-23	-86	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	36.3402983470227	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCGGAACTGTTCTGGGT	4148	False	NA	NA	False	NA	NA	NA	4384052	4367819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4383670
transcript_66370.known	chr19	-	1076	6	FSM	ENSMUSG00000054611.18	ENSMUST00000176653.2	1076	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	40.3464992285576	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTATGGTGACTCGGTC	4171	False	NA	NA	False	NA	NA	NA	4384029	4374933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4383670
transcript_66373.known	chr19	-	3581	8	FSM	ENSMUSG00000049303.11	ENSMUST00000059295.10	3581	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1.55182578445717	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGGGAGCCCTGCTCAG	NA	False	NA	NA	False	AATAAA	-20	NA	4527475	4495935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4497889_4500956_4501091_4502304_4502426_4503792_4504009_4506522_4506916_4510644_4510839_4517934_4517992_4526962
transcript_66375.known	chr19	-	1344	5	FSM	ENSMUSG00000041845.12	ENSMUST00000048197.10	1344	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	4.02336923485777	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACATTCAAAGAGCTTAGC	9148	False	NA	NA	False	NA	NA	NA	4489460	4475486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4476285_4476654_4476790_4482082_4482193_4482795_4482884_4489247
transcript_66377.known	chr19	-	1495	4	FSM	ENSMUSG00000041845.12	ENSMUST00000117462.2	1495	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2.62466929133727	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTGTCCTGACTCTTC	9159	False	NA	-4	True	ACTAAA	-15	NA	4489449	4475694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4476790_4482082_4482193_4482795_4482884_4489247
transcript_66382.known	chr19	+	4061	21	FSM	ENSMUSG00000024892.18	ENSMUST00000224726.3	4061	21	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	10.9748576300561	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGTCATGTACAGTCTAC	1701	False	NA	10	True	AATAAA	-25	NA	4560513	4671707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4560610_4565681_4565719_4651627_4651764_4651892_4652078_4652237_4652404_4652501_4652648_4652785_4652904_4653087_4653240_4654492_4654612_4657559_4657723_4659891_4660075_4667607_4667753_4667992_4668083_4668169_4668549_4668985_4669227_4669347_4669598_4669807_4670053_4670141_4670322_4670394_4670644_4670847_4670989_4671067
transcript_66391.known	chr19	-	2918	3	FSM	ENSMUSG00000045045.8	ENSMUST00000113822.3	2918	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	18.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTGGTTTTTCGTCTCA	NA	False	NA	0	True	AATAAA	-18	NA	4665695	4661812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4662667_4663183_4664543_4664990
transcript_66393.known	chr19	-	3194	2	FSM	ENSMUSG00000045045.8	ENSMUST00000053597.3	3194	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTCAGTGTTGGTTTTT	NA	False	NA	-7	True	AATAAA	-11	NA	4665530	4661819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4662667_4663183
transcript_66396.nic	chr19	-	1417	8	NIC	ENSMUSG00000024889.6	novel	1425	8	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	1	9	junction_4	123.357618495237	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTCTTGGAACCTTG	NA	False	NA	-13	True	ATTAAA	-17	NA	4675690	4672622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674180_4674712_4674792_4675040_4675125_4675220_4675324_4675460
transcript_66397.known	chr19	-	1455	8	FSM	ENSMUSG00000024889.6	ENSMUST00000225476.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	109.573011722592	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	False	NA	-9	True	ATTAAA	-21	NA	4675669	4672618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675125_4675220_4675324_4675460
transcript_66398.known	chr19	-	1425	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_6	48.136286113662	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTCTTGGAACCTTG	NA	False	NA	-13	True	ATTAAA	-17	NA	4675668	4672622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
transcript_664.known	chr1	-	294	1	FSM	ENSMUSG00000067736.3	ENSMUST00000088336.3	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTATTCTTCCCTCA	NA	False	NA	NA	False	NA	NA	NA	24651781	24651487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_24651500_24651800
transcript_6641.nic	chr1	+	2530	6	ISM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	-96	4	-96	2	intron_retention	FALSE	canonical	3	675	junction_3	48.3553513067582	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGAGGCCTGTTGTGTCTTC	3647	False	NA	15	True	AATAAA	-15	NA	172139837	172147404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859
transcript_66427.known	chr19	+	1783	4	FSM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	20.1163283594862	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTTAACTGAGTGGC	NA	False	NA	NA	False	AATAAA	-17	NA	4806598	4815968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4806690_4807273_4807698_4812004_4812676_4815371
transcript_66429.known	chr19	-	2610	4	FSM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_3	29.8923996285938	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTCTTGGGTGAC	NA	False	NA	NA	False	AATAAA	-13	NA	4843929	4834320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4835596_4837388_4838071_4842425_4842849_4843699
transcript_66451.known	chr19	+	1443	3	FSM	ENSMUSG00000033760.18	ENSMUST00000182821.8	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	14.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAGTTGTAAAAAGATAC	NA	False	NA	NA	False	AGTAAA	-11	NA	4806570	4812904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4806690_4807273_4807698_4812004
transcript_66452.known	chr19	-	2590	3	FSM	ENSMUSG00000096370.9	ENSMUST00000178353.2	2590	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAATCACCCAGT	7787	False	NA	NA	False	NA	NA	NA	4861640	4792940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4794896_4843843_4844038_4861199
transcript_66453.known	chr19	-	1018	3	FSM	ENSMUSG00000094936.9	ENSMUST00000178615.8	1018	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGTGTGCTTTGAGAA	NA	False	NA	-4	True	AATAAA	-16	NA	4843879	4835180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4835596_4842425_4842849_4843699
transcript_66458.known	chr19	-	3165	3	FSM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_1	19	2003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGGATGGTTCTGGCT	7765	False	NA	NA	False	AATAAA	-17	NA	4861662	4850596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4851834_4852578_4854044_4861199
transcript_66459.known	chr19	+	4194	2	FSM	ENSMUSG00000033760.18	ENSMUST00000182065.2	4194	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAGAACAGTTCCTAAA	NA	False	NA	NA	False	AATAAA	-18	NA	4806592	4811370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4806690_4807273
transcript_66461.known	chr19	-	2965	2	FSM	ENSMUSG00000094936.9	ENSMUST00000179820.2	2965	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAATGTTATTTACCTG	NA	False	NA	-11	True	NA	NA	NA	4843911	4840095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4842849_4843699
transcript_66463.known	chr19	-	3508	2	FSM	ENSMUSG00000006456.11	ENSMUST00000113793.4	3508	2	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGTCATTGTCTTGA	7814	False	NA	0	True	AATAAA	-27	NA	4861613	4850949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4854044_4861199
transcript_66464.known	chr19	+	1211	3	FSM	ENSMUSG00000033760.18	ENSMUST00000183008.2	1211	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	39	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTAGACTTG	NA	False	NA	NA	False	NA	NA	NA	4806591	4810729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4806690_4807273_4807698_4810040
transcript_66467.known	chr19	-	870	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236178.2	870	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	202.991002112841	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889301	4875393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884267_4884339_4888858_4888932_4889224
transcript_66468.known	chr19	-	1067	8	FSM	ENSMUSG00000034108.7	ENSMUST00000037246.7	1067	8	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_5	30.737864703499	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889360	4875393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
transcript_66469.known	chr19	-	984	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236451.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	206.828727330078	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889298	4875393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884221_4884339_4888858_4888932_4889224
transcript_66471.known	chr19	-	840	7	FSM	ENSMUSG00000034108.7	ENSMUST00000235245.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	223.397814074653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCTGTAGCCTGAACAAA	NA	False	NA	-51	True	NA	NA	NA	4889315	4875437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4888858_4888932_4889224
transcript_66475.known	chr19	+	1980	14	FSM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_8	8.77530154238379	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTAAGTGCTTAGTC	NA	False	NA	10	True	AATAAA	-21	NA	4905157	4910946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4905515_4905725_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
transcript_66482.known	chr19	-	2887	21	FSM	ENSMUSG00000006457.5	ENSMUST00000006626.5	2887	21	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_20	6.25519783859791	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTTTGTTGTT	313	False	NA	4	True	AATAAA	-30	NA	4927937	4911243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4911532_4911612_4911772_4912197_4912264_4912351_4912499_4913162_4913343_4913437_4913573_4913998_4914182_4914452_4914594_4914680_4914790_4915326_4915478_4917568_4917717_4917840_4918072_4918745_4918839_4919385_4919472_4920939_4921022_4921109_4921189_4921624_4921713_4921798_4921886_4922266_4922387_4922569_4922685_4927738
transcript_66484.nic	chr19	-	2582	18	ISM	ENSMUSG00000006457.5	ENSMUST00000006626.5	2887	21	5916	7	5916	0	3prime_fragment	FALSE	canonical	2	12	junction_7	4.36643377879897	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTTTTTGTTTTGTTTT	6229	False	NA	-3	True	AATAAA	-23	NA	4922021	4911250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_4911532_4911612_4911772_4912197_4912264_4912351_4912499_4913162_4913343_4913437_4913573_4913998_4914182_4914452_4914594_4914680_4914790_4915326_4915478_4917568_4917717_4917840_4918072_4918745_4918839_4919385_4919472_4920939_4921022_4921109_4921189_4921624_4921713_4921798
transcript_66486.known	chr19	+	2314	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162134.2	2314	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	74.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATGTCTTTTTGTTTGT	NA	False	NA	20	True	NA	NA	NA	4928717	4935423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4928834_4930148_4930427_4933503
transcript_66488.known	chr19	+	2558	3	FSM	ENSMUSG00000006463.14	ENSMUST00000006632.8	2558	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	34	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTTTTTGTTTGTTT	NA	False	NA	22	True	NA	NA	NA	4928699	4935425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4929058_4930148_4930427_4933503
transcript_66490.known	chr19	+	2269	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162088.8	2269	3	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	79	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTTTTTGTTTGTTT	NA	False	NA	22	True	NA	NA	NA	4928695	4935425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_4928765_4930148_4930427_4933503
transcript_66492.known	chr19	-	5602	17	FSM	ENSMUSG00000006464.10	ENSMUST00000053506.8	5602	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	3.75832409459323	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTATTTTGTGTGTG	5073	False	NA	NA	False	ATTAAA	-18	NA	4956656	4936905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4940787_4941017_4941105_4941680_4941816_4942915_4943050_4944288_4944448_4944989_4945060_4947307_4947467_4947601_4947723_4949227_4949335_4950518_4950651_4952870_4952944_4953041_4953081_4953173_4953221_4953729_4954003_4956012_4956048_4956169_4956247_4956583
transcript_665.known	chr1	-	345	1	FSM	ENSMUSG00000101939.2	ENSMUST00000188299.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	814	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGGTAATTAGTTTAAA	NA	False	NA	NA	False	AAAAAG	-18	NA	24652200	24651855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_24651900_24652200
transcript_66508.known	chr19	-	2683	18	FSM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	0	0	0	0	multi-exon	TRUE	canonical	3	495	junction_17	96.7659038009169	1385	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGTGTATGTTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	4978315	4957256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
transcript_66531.known	chr19	-	4110	7	FSM	ENSMUSG00000024901.16	ENSMUST00000025834.15	4110	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	5.01386965216377	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGCTGGTAAAGGACTTCA	8706	False	NA	NA	False	NA	NA	NA	4993155	4979744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_4982896_4984394_4984584_4984930_4985126_4986145_4986248_4988076_4988207_4991787_4991941_4992965
transcript_66539.known	chr19	+	3045	5	FSM	ENSMUSG00000024902.6	ENSMUST00000025836.6	3045	5	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_2	14.5859521458148	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATATATAGGTATATGT	3543	False	NA	NA	False	ATTAAA	-22	NA	5012174	5017027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013694_5014701
transcript_66540.known	chr19	+	813	5	FSM	ENSMUSG00000024902.6	ENSMUST00000236917.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	253.71871728353	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTCTCAGCTTCTCTCC	3744	False	NA	10	True	AATAAA	-13	NA	5012375	5014972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013718_5014701
transcript_66543.known	chr19	+	2401	12	FSM	ENSMUSG00000024891.7	ENSMUST00000025826.7	2401	12	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	25.5138918569071	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCCTGGAGTGTTCACT	4269	False	NA	18	True	ATTAAA	-19	NA	5074098	5081997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080319_5080519_5081029
transcript_66549.nnic	chr19	+	2290	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	23.4795655837156	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4244	False	NA	13	True	ATTAAA	-14	NA	5074073	5081992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
transcript_66551.nnic	chr19	+	2241	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_2	26.9770272639518	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4267	False	NA	13	True	ATTAAA	-14	NA	5074096	5081992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5074306_5074538_5074621_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
transcript_66553.nnic	chr19	+	2320	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	24.5063257139866	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4267	False	NA	13	True	ATTAAA	-14	NA	5074096	5081992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5074306_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
transcript_66564.known	chr19	+	3572	11	FSM	ENSMUSG00000117789.2	ENSMUST00000236560.2	3572	11	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	52.550547095154	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTGTGGCTGATGTGT	267	False	NA	3	True	AATAAA	-14	NA	5088918	5099940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5090061_5090334_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
transcript_66567.nic	chr19	+	1504	10	NIC	ENSMUSG00000080268.5	novel	1388	10	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	76.2029454082248	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTGTGGCTGATGTGT	2730	False	NA	3	True	AATAAA	-14	NA	5091381	5099940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5091640_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
transcript_66569.known	chr19	+	2032	2	FSM	ENSMUSG00000047379.8	ENSMUST00000053705.8	2032	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGCTCTGTTACTCTC	202	False	NA	9	True	AATAAA	-16	NA	5088853	5091159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5090061_5090334
transcript_66570.known	chr19	+	2224	1	FSM	ENSMUSG00000047379.8	ENSMUST00000235776.2	2224	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGGCTCTGTTACTCT	283	False	NA	8	True	AATAAA	-15	NA	5088934	5091158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5088900_5091200
transcript_66571.known	chr19	+	1388	10	FSM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_4	16.1528195757556	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGATGTGTGGCTG	2730	False	NA	8	True	AATAAA	-19	NA	5091381	5099945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
transcript_66572.known	chr19	+	4184	10	FSM	ENSMUSG00000024883.9	ENSMUST00000025818.8	4184	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	7.87557562074193	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGCTTGATAACTAGAA	NA	False	NA	4	True	NA	NA	NA	5100860	5107099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5100970_5101101_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
transcript_66573.known	chr19	+	4503	10	FSM	ENSMUSG00000024883.9	ENSMUST00000225427.2	4503	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	10.8320512061813	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGCTTGATAACTAGAA	NA	False	NA	4	True	NA	NA	NA	5100508	5107099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5100970_5101101_5101283_5101381_5101497_5101585_5101659_5101801_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
transcript_66575.nic	chr19	+	4379	10	NIC	ENSMUSG00000024883.9	novel	4184	10	NA	NA	87	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	8.35330939076111	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGCTTGATAACTAGAA	NA	False	NA	4	True	NA	NA	NA	5100595	5107099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5100900_5101101_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
transcript_66578.known	chr19	-	4006	2	FSM	ENSMUSG00000061451.14	ENSMUST00000077066.8	4006	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTTTTTTGTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	5135559	5129357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5133130_5135325
transcript_66579.known	chr19	+	1421	2	FSM	ENSMUSG00000117893.2	ENSMUST00000237721.2	1421	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTTGGAGAGGAAAGGGT	NA	False	NA	NA	False	NA	NA	NA	5122256	5125285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5122634_5124241
transcript_66580.known	chr19	+	1488	8	FSM	ENSMUSG00000024875.6	ENSMUST00000025811.6	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_7	32.2509294281512	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATTCATATTTTGTC	NA	False	NA	NA	False	GGGGCT	-14	NA	5138572	5142909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
transcript_66581.known	chr19	-	1343	6	FSM	ENSMUSG00000024873.8	ENSMUST00000025805.8	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	5.2687759489278	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAATTCTGCTTCTGGA	NA	False	NA	0	True	AATAAA	-18	NA	5148549	5142895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5143526_5143699_5143844_5143947_5144061_5144311_5144360_5144759_5144829_5148210
transcript_66584.known	chr19	-	1913	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1501	False	NA	0	True	AATAAA	-43	NA	5157100	5149232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
transcript_66586.known	chr19	-	757	5	FSM	ENSMUSG00000024870.7	ENSMUST00000236149.2	757	5	0	0	0	0	multi-exon	FALSE	canonical	3	1015	junction_3	67.2434941090958	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGCTAGGAGGGGCACT	1568	False	NA	NA	False	NA	NA	NA	5157033	5150415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
transcript_66591.known	chr19	-	3169	16	FSM	ENSMUSG00000024862.17	ENSMUST00000116563.8	3169	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	16.0036107036992	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168588	5157773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167461_5168149
transcript_66592.nic	chr19	-	3045	16	NIC	ENSMUSG00000024862.17	novel	3169	16	NA	NA	-99	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_15	17.0507738501479	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168427	5157773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168149
transcript_66593.known	chr19	-	2874	16	FSM	ENSMUSG00000024862.17	ENSMUST00000113727.8	2874	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	30.00814704191	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGGGCTTGTTTTGAGGA	NA	False	NA	-3	True	AATAAA	-16	NA	5168326	5157775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160287_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168211
transcript_666.known	chr1	-	783	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4383	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	NA	False	NA	NA	False	NA	NA	NA	24653052	24652269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_24652300_24653100
transcript_6661.known	chr1	+	7554	1	FSM	ENSMUSG00000050229.4	ENSMUST00000052455.4	7554	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGTCATTTCCCTCAT	5450	False	NA	NA	False	AAGAAA	-40	NA	172204112	172211666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_172204100_172211700
transcript_66610.known	chr19	-	2940	16	FSM	ENSMUSG00000024862.17	ENSMUST00000025798.13	2940	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	25.1779444929265	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168328	5157773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160287_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168149
transcript_66611.nic	chr19	-	4230	25	NIC	ENSMUSG00000024855.11	novel	4869	24	NA	NA	-5	-528	combination_of_known_junctions	FALSE	canonical	1	2	junction_24	17.6493625947228	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTTGGGCTCCTGCCCC	NA	False	NA	-4	True	AATAAA	-19	NA	5323152	5183713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_5185054_5185147_5185268_5186720_5186948_5188957_5189094_5189307_5189351_5191187_5191231_5191634_5191738_5192271_5192383_5192543_5192699_5193378_5193486_5193802_5193908_5194827_5194964_5195098_5195215_5197154_5197236_5202301_5202396_5202687_5202849_5203691_5203752_5205716_5205798_5205883_5205976_5206384_5206530_5209995_5210122_5210745_5210836_5217951_5218040_5322566_5322836_5322951
transcript_66613.known	chr19	-	4869	24	FSM	ENSMUSG00000024855.11	ENSMUST00000025786.9	4869	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_19	9.30455099331212	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTTGTTATCTTCGAT	NA	False	NA	NA	False	AATAAA	-25	NA	5323147	5183185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5185054_5185147_5185268_5186720_5186948_5188957_5189094_5189307_5189351_5191187_5191231_5191634_5191738_5192271_5192383_5192543_5192699_5193378_5193486_5193802_5193908_5194827_5194964_5195098_5195215_5197154_5197236_5202301_5202396_5202687_5202849_5203691_5203752_5205716_5205798_5205883_5205976_5206384_5206530_5209995_5210122_5210745_5210836_5217951_5218040_5322566
transcript_66618.known	chr19	+	833	1	FSM	ENSMUSG00000118243.2	ENSMUST00000236582.2	833	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATGCTTCCTTCCCCCTT	9576	False	NA	NA	False	AATAAA	-13	NA	5345223	5346056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5345200_5346100
transcript_66619.known	chr19	-	3222	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	0	0	0	0	multi-exon	TRUE	canonical	3	1448	junction_15	340.757138589935	2638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3866	False	NA	-25	True	AATAAA	-18	NA	5345483	5323959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
transcript_66620.known	chr19	-	933	9	FSM	ENSMUSG00000024853.11	ENSMUST00000235182.2	933	9	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	555.172045405746	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTCGGAACCGAAAGAAGAA	3918	False	NA	NA	False	NA	NA	NA	5345431	5337300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5337313_5337562_5337655_5337937_5338035_5338331_5338439_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
transcript_66621.known	chr19	-	405	2	FSM	ENSMUSG00000118263.2	ENSMUST00000235637.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGTTCTTTACTCTTTA	9200	False	NA	-3	True	NA	NA	NA	5357444	5355905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5356162_5357295
transcript_66622.known	chr19	+	2421	3	FSM	ENSMUSG00000047658.7	ENSMUST00000061169.7	2421	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGGGTGTATGTCAATT	NA	False	NA	NA	False	AATAAA	-14	NA	5348358	5358766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5348529_5352463_5352700_5356751
transcript_66625.known	chr19	+	2556	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	0	0	0	0	multi-exon	TRUE	canonical	3	703	junction_2	59.7581793564697	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTTTATGAAGAGTT	1792	False	NA	23	True	AATAAA	-40	NA	5416768	5421554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
transcript_66638.known	chr19	-	758	3	FSM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_2	2345.5	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	8986	False	NA	-9	True	AATAAA	-14	NA	5416391	5414668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5415187_5415845_5415985_5416290
transcript_66639.known	chr19	-	732	3	FSM	ENSMUSG00000024844.16	ENSMUST00000237167.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_2	2653	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATCTGTTGGATGCCCTT	8743	False	NA	-107	True	NA	NA	NA	5416634	5414766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5415187_5415845_5415985_5416461
transcript_66640.known	chr19	-	1261	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	0	0	0	0	multi-exon	FALSE	canonical	3	4588	junction_2	727	1948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGTTCTGTGTCAGAG	8181	False	NA	-6	True	AATAAA	-17	NA	5417196	5414665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5415187_5415845_5415985_5416595
transcript_66642.known	chr19	-	743	2	FSM	ENSMUSG00000024844.16	ENSMUST00000237704.2	743	2	0	0	0	0	multi-exon	FALSE	canonical	3	1029	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8558	False	NA	-8	True	AATAAA	-15	NA	5416819	5414667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5415187_5416595
transcript_66643.known	chr19	+	444	3	FSM	ENSMUSG00000024841.9	ENSMUST00000235664.2	444	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	354.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAACCATGTCCGCTCT	1996	False	NA	NA	False	AAAAAG	-28	NA	5416972	5418713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5417239_5418449_5418559_5418644
transcript_66647.known	chr19	-	5091	20	FSM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_1	46.7672968579718	1575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTGGTTGTTTTTTTT	9040	False	NA	NA	False	AATAAA	-23	NA	5438731	5427550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433182_5433308_5433647_5433855_5433962_5434106_5434191_5434292_5434397_5434476_5434645_5434752_5434850_5434978_5435490_5435547_5435839_5435898_5438342
transcript_6665.known	chr1	+	4133	21	FSM	ENSMUSG00000037995.16	ENSMUST00000052629.13	4133	21	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_16	2.95127091267474	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCACCTCTCTTTGT	NA	False	NA	4	True	AATAAA	-16	NA	172309781	172326444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_172309828_172311847_172312114_172312348_172312538_172317079_172317233_172317855_172318011_172318221_172318340_172319181_172319324_172319431_172319578_172319667_172319811_172321053_172321195_172321664_172321782_172321972_172322124_172322319_172322444_172322674_172322851_172323100_172323352_172323549_172323635_172323717_172323895_172324164_172324208_172324452_172325314_172325563_172325692_172325923
transcript_66692.nic	chr19	-	640	4	ISM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	-15	7305	-15	-115	5prime_fragment	FALSE	canonical	3	396	junction_3	14.7044966667418	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGGTGAGGGTTTCTTGG	9025	False	NA	5	True	NA	NA	NA	5438746	5434855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_5434978_5435490_5435547_5435839_5435898_5438342
transcript_66695.known	chr19	-	992	7	FSM	ENSMUSG00000024914.17	ENSMUST00000025853.16	992	7	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_1	76.7282361469506	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGATTTTGGTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	5475007	5472838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388_5474462_5474700
transcript_66696.known	chr19	-	939	7	FSM	ENSMUSG00000024914.17	ENSMUST00000113674.8	939	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	385.460655147405	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5474949	5472854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5473054_5473358_5473448_5473587_5473703_5473799_5473920_5474209_5474304_5474388_5474462_5474700
transcript_66697.known	chr19	-	727	7	FSM	ENSMUSG00000024914.17	ENSMUST00000148219.9	727	7	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_1	395.234705235031	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGGTTTCTTTTCATCC	NA	False	NA	NA	False	NA	NA	NA	5474787	5472833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5473004_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388_5474462_5474700
transcript_66699.known	chr19	-	734	6	FSM	ENSMUSG00000024914.17	ENSMUST00000136579.3	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_1	82.8700187039921	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTCTTAAATTTATTAAA	NA	False	NA	NA	False	NA	NA	NA	5474542	5472870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388
transcript_667.known	chr1	-	678	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACCCACCAAACTCAT	NA	False	NA	NA	False	AATACA	-1	NA	24653732	24653054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_24653100_24653700
transcript_6670.known	chr1	+	1586	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	392	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327613	172334947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
transcript_66700.known	chr19	+	1528	2	FSM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	247	False	NA	34	True	AATAAA	-35	NA	5475171	5477341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5475337_5475978
transcript_66702.known	chr19	+	1529	2	FSM	ENSMUSG00000047423.11	ENSMUST00000054477.8	1529	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	260	False	NA	34	True	AATAAA	-35	NA	5475184	5477341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5475337_5475964
transcript_66703.known	chr19	+	1864	4	FSM	ENSMUSG00000024912.7	ENSMUST00000025850.7	1864	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGGTTGTCATGTTGGA	2943	False	NA	NA	False	AATAAA	-16	NA	5497574	5505974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5498084_5500187_5500380_5504440_5504549_5504919
transcript_66704.known	chr19	-	4165	2	FSM	ENSMUSG00000095098.3	ENSMUST00000236881.2	4165	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTGGCTAGAGTCATATA	5331	False	NA	NA	False	NA	NA	NA	5507532	5503212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5507213_5507367
transcript_66708.known	chr19	+	1209	10	FSM	ENSMUSG00000024911.8	ENSMUST00000225141.2	1209	10	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	12.1837779216647	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGGTCCTTGTTCCAGG	NA	False	NA	17	True	AATAAA	-17	NA	5510643	5515079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
transcript_66709.known	chr19	+	1215	10	FSM	ENSMUSG00000024911.8	ENSMUST00000025847.7	1215	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	35.2423706830007	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGGTCCTTGTTCCA	NA	False	NA	15	True	AATAAA	-15	NA	5510656	5515077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513354_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
transcript_6671.known	chr1	+	1908	12	FSM	ENSMUSG00000026546.17	ENSMUST00000085894.12	1908	12	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_1	6.26415751889171	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGCTCCACTTCACTGC	5422	False	NA	6	True	ATTAAA	-19	NA	172348610	172373437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_172348749_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
transcript_66712.known	chr19	-	1241	10	FSM	ENSMUSG00000024910.6	ENSMUST00000025844.6	1241	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.15470053837925	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGTGGATTCAGCT	NA	False	NA	NA	False	CATAAA	-17	NA	5518535	5515267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5515480_5515557_5515759_5515832_5515898_5516047_5516174_5516258_5516340_5516416_5516514_5516608_5516764_5517050_5517165_5517865_5517951_5518430
transcript_66715.nic	chr19	+	1495	9	NIC	ENSMUSG00000024911.8	novel	1209	10	NA	NA	-8	0	intron_retention	FALSE	canonical	3	126	junction_5	11.4455231422596	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGGTCCTTGTTCCAG	NA	False	NA	16	True	AATAAA	-16	NA	5510634	5515078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5514244_5514361_5514460_5514952
transcript_66717.nic	chr19	+	1516	9	NIC	ENSMUSG00000024911.8	novel	1215	10	NA	NA	-8	0	intron_retention	FALSE	canonical	3	40	junction_5	37.3019771593946	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGGTCCTTGTTCCAG	NA	False	NA	16	True	AATAAA	-16	NA	5510634	5515078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513354_5513631_5513741_5513814_5514244_5514361_5514460_5514952
transcript_66725.known	chr19	+	1923	6	FSM	ENSMUSG00000024911.8	ENSMUST00000225917.2	1923	6	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	13.1969693490589	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	5510643	5514830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631
transcript_66735.known	chr19	-	2067	16	FSM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	11.5573930163049	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	False	NA	2	True	AATAAA	-39	NA	5538430	5532859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
transcript_66736.known	chr19	-	1954	16	FSM	ENSMUSG00000024906.11	ENSMUST00000025841.4	1954	16	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	26.5385254551441	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTCGGCTGTTAAGG	NA	False	NA	-24	True	AATAAA	-13	NA	5538313	5532885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5533058_5533135_5533250_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
transcript_66752.known	chr19	+	1557	11	FSM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	7.8873316146844	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524715	5531881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_66755.known	chr19	-	3023	10	FSM	ENSMUSG00000056185.6	ENSMUST00000237924.2	3023	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	2.72618758808562	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAACAAGTACTCTTCC	73	False	NA	NA	False	NA	NA	NA	5560535	5544875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5546011_5546085_5546246_5546343_5547054_5547317_5547394_5547474_5547581_5547702_5547808_5547932_5548057_5548207_5548535_5548747_5548853_5560360
transcript_66761.known	chr19	+	2354	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	0	0	0	0	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	5616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	5540482	5545229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
transcript_66765.known	chr19	+	771	3	FSM	ENSMUSG00000056201.9	ENSMUST00000237122.2	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	6280	junction_2	33	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGCTGGGGGGATCCCA	NA	False	NA	NA	False	NA	NA	NA	5540592	5543607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5540631_5542524_5542833_5543182
transcript_66767.known	chr19	+	736	2	FSM	ENSMUSG00000056201.9	ENSMUST00000236645.2	736	2	0	0	0	0	multi-exon	FALSE	canonical	3	6346	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTTAGGGCCCCCGAGA	NA	False	NA	NA	False	NA	NA	NA	5540543	5543173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5540631_5542524
transcript_66769.known	chr19	+	1148	6	FSM	ENSMUSG00000056201.9	ENSMUST00000116560.3	1148	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	3070.36039578418	5607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGGCTTTTGGGTTTGG	NA	False	NA	12	True	NA	NA	NA	5540512	5544057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5543519_5543520_5543527_5543528
transcript_66770.known	chr19	-	2972	4	FSM	ENSMUSG00000024922.3	ENSMUST00000025861.3	2972	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.942809041582063	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTTCCCCTTCTCAGT	3378	False	NA	NA	False	ATTAAA	-20	NA	5610674	5599163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5601282_5601512_5601703_5603581_5603800_5610228
transcript_66771.known	chr19	+	2785	3	FSM	ENSMUSG00000049562.7	ENSMUST00000235575.2	2785	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTCCTGGCCTGTTTTC	7966	False	NA	NA	False	NA	NA	NA	5618052	5621289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5618112_5618467_5618636_5618731
transcript_66774.known	chr19	-	2154	14	FSM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_10	96.4922046702747	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCAGGAGTTCTTACCA	3440	False	NA	-3	True	AATAAA	-18	NA	5660265	5653041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879_5659947_5660045
transcript_66775.nic	chr19	-	2001	14	NIC	ENSMUSG00000024926.11	novel	2154	14	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_10	117.018432776497	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	3617	False	NA	-6	True	AATAAA	-15	NA	5660088	5653044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5659013_5659263_5659401_5659490_5659560_5659879_5659947_5660045
transcript_66779.known	chr19	-	1386	13	FSM	ENSMUSG00000024926.11	ENSMUST00000236229.2	1386	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	61.0948147463342	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACACTACCCATTGCCAT	3648	False	NA	NA	False	NA	NA	NA	5660057	5653445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
transcript_668.known	chr1	-	681	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1948	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTCACTATGAAGCTAA	NA	False	NA	NA	False	ACTAAA	-32	NA	24654646	24653965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_24654000_24654600
transcript_66800.known	chr19	+	1126	4	FSM	ENSMUSG00000024925.12	ENSMUST00000025864.11	1126	4	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_3	35.9845645921816	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTTTGGGAGTGAAGTG	5045	False	NA	NA	False	NA	NA	NA	5651900	5653467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5652109_5652220_5652403_5652477_5652598_5652851
transcript_66804.known	chr19	+	771	3	FSM	ENSMUSG00000024925.12	ENSMUST00000155639.2	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	34.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGCCTGAGTCTGTGGG	5147	False	NA	2	True	AATAAA	-11	NA	5652002	5652960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5652109_5652220_5652403_5652477
transcript_66807.known	chr19	+	869	2	FSM	ENSMUSG00000024925.12	ENSMUST00000127071.2	869	2	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGTCACAGATCCCTTC	5059	False	NA	-63	True	NA	NA	NA	5651914	5652895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5652109_5652220
transcript_66808.known	chr19	+	271	2	FSM	ENSMUSG00000024925.12	ENSMUST00000133953.2	271	2	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGAGTCTGTGGGCA	5582	False	NA	4	True	AATAAA	-13	NA	5652437	5652962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5652598_5652851
transcript_66809.known	chr19	-	1905	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	3629	False	NA	-6	True	AATAAA	-15	NA	5660076	5653044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
transcript_66810.known	chr19	-	1960	11	FSM	ENSMUSG00000024926.11	ENSMUST00000236964.2	1960	11	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	57.9537746829316	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	3895	False	NA	-5	True	AATAAA	-16	NA	5659810	5653043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490
transcript_66811.known	chr19	+	393	3	FSM	ENSMUSG00000024925.12	ENSMUST00000136226.2	393	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	120.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGTCTGTGGGCACCTT	5407	False	NA	8	True	AATAAA	-17	NA	5652262	5652966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5652403_5652477_5652598_5652833
transcript_66814.known	chr19	+	2716	11	FSM	ENSMUSG00000024927.9	ENSMUST00000025867.6	2716	11	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.59069263796581	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGAGTAGCTGTCTTT	NA	False	NA	10	True	AATAAA	-16	NA	5687510	5698158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5687870_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5689979_5690330_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
transcript_66816.nic	chr19	+	2578	11	NIC	ENSMUSG00000024927.9	novel	786	5	NA	NA	-5	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	26.9287949971773	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGAGTAGCTGTCTTT	NA	False	NA	10	True	AATAAA	-16	NA	5687955	5698158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5688177_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5689979_5690330_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
transcript_6682.nic	chr1	+	2570	9	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-89	-329	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	38.1966539764938	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTTTGAGATATCATTC	NA	False	NA	8	True	NA	NA	NA	173246672	173293269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_173247122_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
transcript_66824.known	chr19	-	3812	18	FSM	ENSMUSG00000056917.14	ENSMUST00000071857.13	3812	18	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_16	22.9642417985895	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAACTCTATTTGTGTTT	8144	False	NA	-9	True	AAAAAG	-18	NA	5713688	5701221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711655_5712615_5712870_5713631
transcript_66826.known	chr19	-	3584	17	FSM	ENSMUSG00000056917.14	ENSMUST00000164304.9	3584	17	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_16	17.2005632175228	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTATTTGTGTTTGTGTGT	8124	False	NA	-3	True	AAAAAG	-24	NA	5713708	5701215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5711623_5711655_5713631
transcript_66829.known	chr19	-	3583	16	FSM	ENSMUSG00000056917.14	ENSMUST00000169854.2	3583	16	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_15	19.0524422464826	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTTTGTGTGTTCA	8097	False	NA	0	True	AAAAAG	-27	NA	5713735	5701212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574_5705185_5705285_5705444_5705715_5705820_5706181_5706357_5709361_5709539_5709623_5709752_5710341_5711140_5713631
transcript_66835.known	chr19	-	7264	35	FSM	ENSMUSG00000054874.13	ENSMUST00000113615.9	7264	35	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_25	21.6322679648029	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCAGTTTTATTTTCTG	NA	False	NA	-2	True	NA	NA	NA	5738936	5714662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5715276_5715356_5715656_5715735_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904_5725083_5725387_5725533_5727152_5727304_5727433_5727527_5727647_5727754_5728670_5728781_5728939_5729032_5729387_5729499_5729597_5729770_5729995_5730029_5730270_5730425_5731459_5731582_5733304_5733441_5733815_5733907_5734317_5734497_5734576_5734701_5735119_5736248_5736458_5736555_5736654_5736695_5737146_5737247_5737478_5737667_5738024
transcript_66839.nnic	chr19	+	4069	12	NNC	ENSMUSG00000004054.10	novel	2885	11	NA	NA	-369	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	23.4485545555329	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGTCACCTTTCTTGG	NA	False	NA	10	True	AATAAA	-22	NA	5738400	5752893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_5738802_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
transcript_66840.nic	chr19	+	3774	12	NIC	ENSMUSG00000004054.10	novel	2885	11	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	20.4999496068721	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGTCACCTTTCTTGG	NA	False	NA	10	True	AATAAA	-22	NA	5738752	5752893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5738859_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
transcript_66845.known	chr19	+	3898	12	FSM	ENSMUSG00000004054.10	ENSMUST00000004156.10	3898	12	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	25.7338571721901	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGTCACCTTTCTTGG	NA	False	NA	10	True	AATAAA	-22	NA	5739064	5752893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5739295_5739504_5739541_5739716_5741017_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
transcript_66846.nnic	chr19	+	2769	11	NNC	ENSMUSG00000004054.10	novel	441	3	NA	NA	-369	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	29.7471006990597	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGTCACCTTTCTTGG	NA	False	NA	10	True	AATAAA	-22	NA	5738400	5752893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_5738802_5739504_5739541_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
transcript_66848.nnic	chr19	+	2630	11	NIC	ENSMUSG00000004054.10	novel	441	3	NA	NA	-173	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	27.36439292219	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGTCACCTTTCTTGG	NA	False	NA	10	True	AATAAA	-22	NA	5738596	5752893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_5738859_5739504_5739541_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
transcript_66858.known	chr19	-	3160	19	FSM	ENSMUSG00000024937.16	ENSMUST00000236215.2	3160	19	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	3.83655259347101	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGCGCCTGCCCTTTCTC	NA	False	NA	NA	False	AATAAA	-16	NA	5776298	5758077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823_5766523_5766923_5766973_5767066_5767225_5770212_5770436_5770591_5770755_5770836_5770906_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
transcript_66859.known	chr19	-	2852	19	FSM	ENSMUSG00000024937.16	ENSMUST00000075606.6	2852	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	5.41602560309064	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGCCTGCCCTTTCTCA	NA	False	NA	NA	False	AATAAA	-17	NA	5776298	5758076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823_5766523_5766923_5766973_5767066_5767225_5770713_5770755_5770836_5770906_5770999_5771036_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
transcript_66861.known	chr19	-	2815	18	FSM	ENSMUSG00000024937.16	ENSMUST00000235730.2	2815	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_10	4.01295480019072	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAACCAGCGCCTGCCCT	NA	False	NA	NA	False	AATAAA	-11	NA	5776303	5758082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5758454_5758583_5758699_5758785_5758860_5760238_5760339_5760601_5760726_5760820_5760877_5760996_5761067_5765823_5766523_5766923_5766973_5767066_5767225_5770713_5770755_5770836_5770906_5771469_5771613_5771694_5771874_5771984_5772039_5772673_5772770_5772977_5773036_5775944
transcript_66869.known	chr19	-	2532	5	FSM	ENSMUSG00000118125.2	ENSMUST00000160852.8	2532	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	171.430744033852	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGATTGCCTGGTTAAT	NA	False	NA	-2	True	AATAAA	-16	NA	5781741	5778115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5778897_5779264_5780741_5781268_5781354_5781471_5781624_5781703
transcript_66870.known	chr19	-	705	4	FSM	ENSMUSG00000079478.10	ENSMUST00000159693.2	705	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	231.015631986717	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGTTTGTTCTTTCTTGG	NA	False	NA	-1	True	AAAACA	-13	NA	5781760	5780334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5780741_5781268_5781354_5781466_5781624_5781703
transcript_66873.known	chr19	-	610	3	FSM	ENSMUSG00000079478.10	ENSMUST00000159008.2	610	3	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_1	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGTAAATCAGTGGGGC	NA	False	NA	NA	False	NA	NA	NA	5781727	5780919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5781354_5781471_5781624_5781703
transcript_66874.known	chr19	-	1189	2	FSM	ENSMUSG00000024939.7	ENSMUST00000116558.3	1189	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATTGCCTGGTTAATT	NA	False	NA	-1	True	AATAAA	-17	NA	5779661	5778114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5778907_5779264
transcript_66875.known	chr19	-	1160	2	FSM	ENSMUSG00000024939.7	ENSMUST00000161368.2	1160	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATTGCCTGGTTAATT	NA	False	NA	-1	True	AATAAA	-17	NA	5779681	5778114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5778858_5779264
transcript_66876.known	chr19	+	5190	28	FSM	ENSMUSG00000024940.12	ENSMUST00000081496.6	5190	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.60315309493416	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGGTTGGAAGCCCAG	NA	False	NA	NA	False	AATAAA	-21	NA	5790931	5808560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5791014_5791362_5792591_5795467_5795798_5795945_5796149_5796326_5796433_5796670_5796764_5796928_5797052_5797440_5797600_5797698_5797885_5798602_5798620_5798693_5798767_5798897_5798997_5800976_5801103_5801199_5801332_5801426_5801556_5801781_5801905_5802046_5802170_5803660_5803784_5803956_5804077_5805573_5805703_5805959_5806128_5806274_5806359_5806611_5806741_5806821_5806960_5807338_5807501_5807574_5807656_5807738_5807871_5807968
transcript_6688.nic	chr1	+	1078	5	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-89	16	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	41.105808591974	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTGCGTAGGAGTGCCC	NA	False	NA	NA	False	AAAAAG	-4	NA	173246672	173283177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_173247122_173255324_173255465_173280393_173280515_173281789_173281880_173282899
transcript_66880.known	chr19	-	2586	17	FSM	ENSMUSG00000024941.10	ENSMUST00000025890.10	2586	17	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	68.5770552007011	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTCCCAGCTCAGTC	9907	False	NA	-11	True	AATAAA	-13	NA	5821429	5808454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809782_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
transcript_66881.known	chr19	-	2395	17	FSM	ENSMUSG00000024941.10	ENSMUST00000236773.2	2395	17	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	63.7916224417439	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGGAAAGGAGAAGAGAAA	9910	False	NA	NA	False	AAAAAG	-3	NA	5821426	5808690	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809368_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
transcript_66888.known	chr19	-	2719	16	FSM	ENSMUSG00000024941.10	ENSMUST00000235599.2	2719	16	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_11	19.8173885486683	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTCCCAGCTCAGTCCAA	9907	False	NA	-8	True	AATAAA	-16	NA	5821429	5808451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5808725_5808827_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
transcript_66894.known	chr19	-	6983	1	FSM	ENSMUSG00000092341.4	ENSMUST00000172812.3	6983	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGCTTCTTTGTGCAT	4061	False	NA	0	True	AATAAA	-17	NA	5852700	5845717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5845700_5852700
transcript_66895.known	chr19	-	485	2	FSM	ENSMUSG00000092341.4	ENSMUST00000173499.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGACATACAGGAAGGTG	4062	False	NA	3	True	NA	NA	NA	5852699	5851943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5851995_5852265
transcript_66897.nic	chr19	-	3035	2	ISM	ENSMUSG00000092274.4	ENSMUST00000174829.2	1030	4	-221	-1378	-2	4	intron_retention	FALSE	canonical	3	17	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGAATTGTCATGGCTGT	9999	False	NA	-8	True	AATAAA	-19	NA	5895508	5892330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_5894463_5894605
transcript_669.known	chr1	-	492	1	FSM	ENSMUSG00000101249.2	ENSMUST00000187117.2	492	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGGAAGGAATCGAACCC	NA	False	NA	NA	False	AGTAAA	-5	NA	24655278	24654786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_24654800_24655300
transcript_6690.known	chr1	+	744	6	FSM	ENSMUSG00000037860.16	ENSMUST00000173023.2	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	14.8108068652589	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAAGAAGAGAGGAACAC	NA	False	NA	NA	False	NA	NA	NA	173248163	173287285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263
transcript_66901.known	chr19	-	4504	11	FSM	ENSMUSG00000024816.13	ENSMUST00000025728.13	4504	11	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	18.6118241986109	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGTTTAAATTATTTTA	4335	False	NA	NA	False	NA	NA	NA	5925302	5899729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
transcript_66907.known	chr19	+	2480	6	FSM	ENSMUSG00000024818.16	ENSMUST00000025732.14	2480	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.63818119165458	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGATGATCCCTTTCTGT	2866	False	NA	NA	False	AATAAA	-17	NA	5927844	5935794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5928720_5929876_5929921_5930112_5930185_5930467_5930654_5934372_5934632_5934750
transcript_66908.known	chr19	-	2115	2	FSM	ENSMUSG00000044390.6	ENSMUST00000055911.6	2115	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGTGGAGGACCTTTCTT	8066	False	NA	NA	False	AATAAA	-20	NA	5944135	5941165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5943143_5943997
transcript_66909.known	chr19	-	2155	2	FSM	ENSMUSG00000044390.6	ENSMUST00000236767.2	2155	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAGGATGTGGAGGACCT	8024	False	NA	NA	False	AATAAA	-15	NA	5944177	5941170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5943146_5943997
transcript_6691.nic	chr1	+	2585	3	ISM	ENSMUSG00000028354.14	ENSMUST00000030039.13	6442	18	3	240160	3	17	5prime_fragment	TRUE	canonical	3	7	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTAGCTTCCTTTGGATG	NA	False	NA	NA	False	AATAAA	-2	NA	174329393	174410135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_174331158_174364610_174364778_174409481
transcript_66910.known	chr19	-	2406	12	FSM	ENSMUSG00000024826.16	ENSMUST00000118623.2	2406	12	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	287.667249232497	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGCTGGACAGTTTGT	1351	False	NA	-26	True	AATAAA	-14	NA	5962820	5947414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5953758_5953801_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
transcript_66916.known	chr19	-	3314	11	FSM	ENSMUSG00000024826.16	ENSMUST00000136983.8	3314	11	0	0	0	0	multi-exon	FALSE	canonical	3	642	junction_2	68.1739686390634	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATGAGTGCTCTGTCT	1272	False	NA	NA	False	NA	NA	NA	5962899	5946543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
transcript_66927.known	chr19	+	647	2	FSM	ENSMUSG00000110156.3	ENSMUST00000209642.2	647	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGAGCCTGGCTGTTCC	9224	False	NA	NA	False	NA	NA	NA	5962849	5964621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5963101_5964225
transcript_66929.known	chr19	+	410	2	FSM	ENSMUSG00000110156.3	ENSMUST00000210917.2	410	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGCTCACACTACACAG	9355	False	NA	0	True	NA	NA	NA	5962980	5964854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_5963101_5964564
transcript_66938.nnic	chr19	-	2384	19	NNC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	-60	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	97.5723378376838	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAACTGATTTTAATCTTT	1566	False	NA	-9	True	AATAAA	-12	NA	6014290	5990578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_5990728_5990815_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_66943.nic	chr19	-	2435	18	NIC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_17	91.7598792094124	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1583	False	NA	0	True	AATAAA	-21	NA	6014273	5990569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011215_6013853
transcript_66944.known	chr19	-	2421	18	FSM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_17	37.0964328301216	1391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1626	False	NA	0	True	AATAAA	-21	NA	6014230	5990569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_6695.known	chr1	-	2636	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	732	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAATAGACTAATTTTTAT	792	False	NA	NA	False	AATAAA	-21	NA	175453201	175427939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
transcript_66955.known	chr19	-	2391	18	FSM	ENSMUSG00000024833.16	ENSMUST00000165143.3	2391	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	92.2413338358681	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1626	False	NA	NA	False	NA	NA	NA	6014230	5991134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_5991581_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_66991.known	chr19	-	2483	9	FSM	ENSMUSG00000024833.16	ENSMUST00000237136.2	2483	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_8	123.144160945617	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGGAAGGAAAGAAAGAAGG	1659	False	NA	0	True	NA	NA	NA	6014197	5999885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011215_6013853
transcript_66992.known	chr19	-	2501	9	FSM	ENSMUSG00000024833.16	ENSMUST00000236176.2	2501	9	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_8	37.3597376864453	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAGAAAGAAGGAAGGAA	1676	False	NA	6	True	NA	NA	NA	6014180	5999879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_670.known	chr1	+	4453	16	FSM	ENSMUSG00000073725.9	ENSMUST00000191471.7	4453	16	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_9	21.4185796810983	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCGACTAATGAACAGCTT	NA	False	NA	NA	False	CATAAA	-22	NA	24717710	24804529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
transcript_67003.known	chr19	-	2878	3	FSM	ENSMUSG00000024833.16	ENSMUST00000238043.2	2878	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	163	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAAAGTAAA	1665	False	NA	NA	False	NA	NA	NA	6014191	6006708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6009153_6011118_6011215_6013853
transcript_67004.known	chr19	-	1897	10	FSM	ENSMUSG00000037451.9	ENSMUST00000041827.8	1897	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	2.68512132746546	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGAGATGCTGGGTCTT	8724	False	NA	NA	False	AATAAA	-19	NA	6036171	6020261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6020582_6021426_6021634_6021746_6021856_6022883_6023099_6030387_6030504_6031657_6031782_6032860_6033030_6034825_6034981_6035607_6035712_6035793
transcript_67007.known	chr19	-	3062	22	FSM	ENSMUSG00000024942.20	ENSMUST00000025891.11	3062	22	0	0	0	0	multi-exon	TRUE	canonical	2	82	junction_11	40.0795693849892	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTCTCTGGGTGTTAT	2594	False	NA	-6	True	AATAAA	-14	NA	6065236	6038572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
transcript_67009.known	chr19	-	3122	22	FSM	ENSMUSG00000024942.20	ENSMUST00000164843.10	3122	22	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_21	51.1945734794372	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGTCTCTGGGTGTTA	1903	False	NA	-7	True	AATAAA	-13	NA	6065927	6038573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065765
transcript_6701.known	chr1	-	1913	4	FSM	ENSMUSG00000026525.10	ENSMUST00000027809.8	1913	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTGTCATGTGTGTAG	NA	False	NA	NA	False	AATAAA	-30	NA	175520342	175489986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_175490721_175491092_175491345_175492875_175493196_175519735
transcript_67024.nnic	chr19	-	2288	17	NNC	ENSMUSG00000024942.20	novel	3062	22	NA	NA	5867	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_16	63.9987487670657	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTCTCTGGGTGTTAT	8464	False	NA	-6	True	AATAAA	-14	NA	6059366	6038572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6059279
transcript_67028.known	chr19	+	3464	16	FSM	ENSMUSG00000024807.19	ENSMUST00000138532.8	3464	16	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_11	13.9593059362642	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTAGAACGTGTCACCTA	739	False	NA	13	True	AATAAA	-16	NA	6096605	6103742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6097159_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357_6102510_6102577
transcript_67049.known	chr19	-	1764	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGAAACTCCTGTAACAC	NA	False	NA	0	True	ATTAAA	-42	NA	6107815	6103651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
transcript_67054.known	chr19	-	1311	3	FSM	ENSMUSG00000007338.11	ENSMUST00000235520.2	1311	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	445.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACGGTGTTCAGAACCT	NA	False	NA	-15	True	ATTAAA	-15	NA	6107788	6103926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6105013_6105105_6105231_6107688
transcript_67058.known	chr19	+	503	5	FSM	ENSMUSG00000038274.14	ENSMUST00000236217.2	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	6188.20864628852	1499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1107	False	NA	4	True	AATAAA	-16	NA	6107998	6109549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6108032_6108257_6108356_6108457_6108603_6109173_6109230_6109378
transcript_67059.known	chr19	+	613	5	FSM	ENSMUSG00000038274.14	ENSMUST00000178310.9	613	5	0	0	0	0	multi-exon	FALSE	canonical	3	11442	junction_1	1294.53167207295	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	982	False	NA	4	True	AATAAA	-16	NA	6107873	6109549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6108032_6108272_6108356_6108457_6108603_6109173_6109230_6109378
transcript_67060.known	chr19	+	472	4	FSM	ENSMUSG00000038274.14	ENSMUST00000237840.2	472	4	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_2	399.82023738453	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	1361	False	NA	1	True	AATAAA	-13	NA	6108252	6109546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
transcript_67061.known	chr19	+	450	5	FSM	ENSMUSG00000038274.14	ENSMUST00000237859.2	450	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	6192.96432958402	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGCCATGCTAATAAAGC	1080	False	NA	-29	True	NA	NA	NA	6107971	6109516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6108032_6108304_6108356_6108457_6108603_6109173_6109230_6109378
transcript_67062.known	chr19	+	1281	1	FSM	ENSMUSG00000075227.7	ENSMUST00000162726.5	1281	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCAGTGCCTTTTCCG	2533	False	NA	11	True	AATAAA	-22	NA	6111221	6112502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6111200_6112500
transcript_67064.known	chr19	-	1471	10	FSM	ENSMUSG00000024799.17	ENSMUST00000025713.12	1471	10	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	30.8704981223334	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9961	False	NA	0	True	AATAAA	-15	NA	6117872	6112850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
transcript_67065.known	chr19	-	1498	10	FSM	ENSMUSG00000024799.17	ENSMUST00000113543.9	1498	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	72.9870612582197	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	9961	False	NA	-1	True	AATAAA	-14	NA	6117872	6112851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6113132_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
transcript_67066.known	chr19	-	2675	10	FSM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_7	16.3026923475166	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACAAGAGCAGCAGCTTT	987	False	NA	NA	False	TTTAAA	-7	NA	6127261	6117871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
transcript_67070.nic	chr19	-	2633	10	NIC	ENSMUSG00000024797.15	novel	2675	10	NA	NA	-41	-1	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	45.903548909307	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTGCCTGCAGGGG	946	False	NA	-4	True	AATAAA	-17	NA	6127302	6118020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_6118472_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
transcript_67096.nic	chr19	-	1302	8	NIC	ENSMUSG00000024792.10	novel	1287	8	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_7	201.730978669866	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6643	False	NA	NA	False	AATAAA	-18	NA	6134770	6130791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134675
transcript_67097.known	chr19	-	922	8	FSM	ENSMUSG00000024792.10	ENSMUST00000160977.8	922	8	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_7	88.3658905474556	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGGCTGCTGCTCCTGTTG	6468	False	NA	NA	False	NA	NA	NA	6134945	6131197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
transcript_67098.known	chr19	-	1287	8	FSM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_7	142.172789382555	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6440	False	NA	NA	False	AATAAA	-18	NA	6134973	6130791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134893
transcript_67101.known	chr19	-	784	7	FSM	ENSMUSG00000024799.17	ENSMUST00000161718.8	784	7	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_5	111.460007775584	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCCGTGCCTGGCAGGAG	9995	False	NA	NA	False	NA	NA	NA	6117838	6113007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116997_6117053_6117698
transcript_67105.known	chr19	-	784	7	FSM	ENSMUSG00000024792.10	ENSMUST00000161548.8	784	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_6	215.340815143499	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCCCAGCTGCTCAGGT	6690	False	NA	NA	False	NA	NA	NA	6134723	6131894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134675
transcript_67113.known	chr19	-	706	6	FSM	ENSMUSG00000024792.10	ENSMUST00000160712.8	706	6	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_5	100.778966059392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCGCCCTCCTCCCTCCC	6439	False	NA	NA	False	NA	NA	NA	6134974	6132290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
transcript_67114.known	chr19	-	732	5	FSM	ENSMUSG00000024799.17	ENSMUST00000161528.2	732	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	104.193329920874	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTATGGTTTTGCTTTAA	9948	False	NA	-68	True	NA	NA	NA	6117885	6116216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6116445_6116528_6116594_6116997_6117053_6117152_6117350_6117698
transcript_67115.known	chr19	-	1443	5	FSM	ENSMUSG00000024799.17	ENSMUST00000160354.8	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_4	26.5988721565408	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACAGGATTGAATGAA	4068	False	NA	NA	False	AATATA	-18	NA	6117806	6115556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
transcript_67119.known	chr19	-	793	5	FSM	ENSMUSG00000024792.10	ENSMUST00000160444.8	793	5	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_4	111.24522461661	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTGGCACACGGTGAGC	6489	False	NA	NA	False	NA	NA	NA	6134924	6132224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
transcript_67121.known	chr19	-	718	4	FSM	ENSMUSG00000024799.17	ENSMUST00000160417.8	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	116.793264645983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAGAGAGCGCGCGCA	9953	False	NA	-10	True	TATAAA	-13	NA	6117880	6116158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117698
transcript_67124.known	chr19	-	840	2	FSM	ENSMUSG00000024797.15	ENSMUST00000160590.2	840	2	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGGTAACTTTTGTTTC	1018	False	NA	1	True	ATTAAA	-20	NA	6127230	6125932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6126523_6126980
transcript_67126.known	chr19	-	1357	8	FSM	ENSMUSG00000024792.10	ENSMUST00000237738.2	1357	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	215.875247420772	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6427	False	NA	NA	False	AATAAA	-18	NA	6134986	6130791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134079_6134381_6134492_6134824
transcript_67128.known	chr19	+	2024	6	FSM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_5	42.0218990527558	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135012	6141807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677
transcript_67133.known	chr19	+	1735	5	FSM	ENSMUSG00000024791.11	ENSMUST00000152528.2	1735	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	197.768014350147	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135856	6141807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6135886_6136431_6136498_6136581_6136618_6140080_6140555_6140677
transcript_67134.known	chr19	+	1794	5	FSM	ENSMUSG00000024791.11	ENSMUST00000156961.8	1794	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	194.824921403808	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135780	6141807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6135869_6136431_6136498_6136581_6136618_6140080_6140555_6140677
transcript_67135.known	chr19	-	1442	2	FSM	ENSMUSG00000024790.9	ENSMUST00000113533.3	1442	2	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_1	0	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACAGGAACTTTTAGAC	NA	False	NA	-9	True	AATAAA	-25	NA	6168680	6166029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6166618_6167826
transcript_67137.known	chr19	-	1635	8	FSM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_5	6.49018096662888	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTCCATTTGCTTATTA	NA	False	NA	1	True	NA	NA	NA	6178334	6169428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
transcript_67138.known	chr19	-	1286	5	FSM	ENSMUSG00000024944.7	ENSMUST00000025893.7	1286	5	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	48.4890451545501	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGAGCCATTTGTGA	NA	False	NA	-8	True	AATAAA	-18	NA	6191578	6184412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
transcript_67139.known	chr19	-	2305	4	FSM	ENSMUSG00000024944.7	ENSMUST00000134821.2	2305	4	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	55.8091987638836	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTGTGAGTCACTGAC	NA	False	NA	1	True	AATAAA	-27	NA	6191170	6184403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6184832_6186008_6187671_6187759_6187871_6191066
transcript_67141.known	chr19	+	882	3	FSM	ENSMUSG00000039699.15	ENSMUST00000135461.8	882	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGGCAGGGTGGGGCC	NA	False	NA	NA	False	NA	NA	NA	6214483	6221397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6215199_6216497_6216603_6221335
transcript_67142.nic	chr19	-	3530	3	NIC	ENSMUSG00000024944.7	novel	2305	4	NA	NA	-60	0	intron_retention	FALSE	canonical	3	728	junction_2	28	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGGCTGAGCCATTTG	NA	False	NA	-11	True	AATAAA	-15	NA	6191230	6184415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_6187671_6187759_6187871_6191066
transcript_67144.nic	chr19	-	755	3	ISM	ENSMUSG00000024944.7	ENSMUST00000134821.2	2305	4	-43	2770	-43	326	5prime_fragment	FALSE	canonical	3	728	junction_2	28	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAAGACTTGTCTTGTTG	NA	False	NA	-2	True	NA	NA	NA	6191213	6187173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_6187671_6187759_6187871_6191066
transcript_67145.known	chr19	+	1562	11	FSM	ENSMUSG00000024786.10	ENSMUST00000113528.2	1562	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3.41906419945575	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTGCCCTGAGGTTTA	8117	False	NA	10	True	AATAAA	-26	NA	6234496	6274255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6234613_6245693_6245811_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
transcript_67146.nnic	chr19	+	1579	10	NIC	ENSMUSG00000024786.10	novel	1562	11	NA	NA	-55	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.54062594260057	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTGCCCTGAGGTTTA	7983	False	NA	10	True	AATAAA	-26	NA	6234362	6274255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_6234613_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
transcript_67150.known	chr19	-	2742	14	FSM	ENSMUSG00000024777.11	ENSMUST00000025695.10	2742	14	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_11	13.4199357135648	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGCTTGCTTTATTGAG	NA	False	NA	0	True	AATAAA	-14	NA	6285902	6277794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6278562_6278971_6279074_6279251_6279380_6280185_6280306_6280415_6280467_6280531_6280586_6280936_6281046_6281145_6281206_6282299_6282431_6282557_6282651_6282796_6282899_6283806_6284004_6284662_6285130_6285541
transcript_67151.known	chr19	+	609	4	FSM	ENSMUSG00000024784.14	ENSMUST00000025698.14	609	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.05480466765633	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCGCTCTTTATTAAATC	239	False	NA	NA	False	AATAAA	-16	NA	6276409	6277798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6276456_6276807_6276918_6277000_6277186_6277530
transcript_67152.known	chr19	+	6371	40	FSM	ENSMUSG00000024773.16	ENSMUST00000045351.13	6371	40	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_9	16.8787297726361	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGCCCCACTCTGTCTA	8944	False	NA	55	True	NA	NA	NA	6291697	6312365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6291997_6294456_6294620_6294716_6294870_6295075_6295179_6295488_6295724_6296333_6296431_6296517_6296680_6296781_6296923_6297668_6297907_6297992_6298141_6298226_6298320_6299801_6299958_6300053_6300298_6300442_6300540_6300625_6300786_6301288_6301432_6301517_6301634_6301735_6301894_6302456_6302608_6302719_6302914_6303017_6303099_6303363_6303471_6303553_6303647_6304388_6304460_6304619_6304697_6305130_6305296_6305438_6305569_6305648_6305858_6306197_6306407_6306581_6306718_6307468_6307673_6307806_6307909_6307992_6308075_6308163_6308297_6308390_6308464_6308580_6308664_6308893_6309016_6310018_6310174_6311401_6311555_6311630
transcript_67154.nic	chr19	+	3346	18	ISM	ENSMUSG00000024773.16	ENSMUST00000045351.13	6371	40	-8	10040	-8	0	5prime_fragment	FALSE	canonical	3	75	junction_9	12.0109523260459	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACAGAAGCACGTG	8936	False	NA	NA	False	NA	NA	NA	6291689	6302325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_6291997_6294456_6294620_6294716_6294870_6295075_6295179_6295488_6295724_6296333_6296431_6296517_6296680_6296781_6296923_6297668_6297907_6297992_6298141_6298226_6298320_6299801_6299958_6300053_6300298_6300442_6300540_6300625_6300786_6301288_6301432_6301517_6301634_6301735
transcript_67157.known	chr19	+	3353	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	1239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCATGCTCCCTTGTCTTT	NA	False	NA	16	True	ATTAAA	-24	NA	6326754	6350126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
transcript_6716.known	chr1	+	7796	15	FSM	ENSMUSG00000039748.12	ENSMUST00000039725.12	7796	15	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_2	66.5922714152693	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGACTTGTATCTTTTT	9553	False	NA	NA	False	NA	NA	NA	175708146	175741055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
transcript_67164.known	chr19	+	5995	37	FSM	ENSMUSG00000024769.8	ENSMUST00000025681.8	5995	37	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_14	6.99001713203715	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTCCCTGCCTAGGTC	NA	False	NA	8	True	AATAAA	-18	NA	6356485	6375682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6356906_6359155_6359248_6359328_6359413_6359756_6359853_6360247_6360397_6360824_6360919_6361051_6361253_6361351_6361601_6362147_6362228_6363248_6363347_6363444_6363526_6363718_6363826_6363920_6364101_6364314_6364396_6364525_6364648_6364734_6364811_6365019_6365127_6365201_6365317_6365668_6365818_6365893_6365983_6366228_6366282_6366370_6366470_6366548_6366609_6366858_6366965_6367190_6367325_6367404_6367545_6367633_6367716_6368387_6368605_6370108_6370172_6370272_6370873_6371686_6371785_6371856_6371942_6372056_6372178_6372283_6372402_6372584_6372709_6372822_6372912_6374546
transcript_67166.known	chr19	+	2639	10	FSM	ENSMUSG00000024947.18	ENSMUST00000079327.12	2639	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	99.9901229690114	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	588	False	NA	21	True	GATAAA	-21	NA	6385042	6390919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6385113_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
transcript_67167.known	chr19	+	2663	10	FSM	ENSMUSG00000024947.18	ENSMUST00000113504.10	2663	10	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	106.997403914508	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGTATGTATGTGTTTC	554	False	NA	23	True	GATAAA	-23	NA	6385008	6390921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6385101_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
transcript_67173.known	chr19	+	2975	9	FSM	ENSMUSG00000024947.18	ENSMUST00000056391.15	2975	9	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_3	26.9153766460735	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	614	False	NA	21	True	GATAAA	-21	NA	6385068	6390919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
transcript_67178.known	chr19	+	2738	8	FSM	ENSMUSG00000024947.18	ENSMUST00000078137.12	2738	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	138.784225416615	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	686	False	NA	21	True	GATAAA	-21	NA	6385140	6390919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389716
transcript_67188.known	chr19	+	4644	32	FSM	ENSMUSG00000024948.16	ENSMUST00000025897.13	4644	32	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	5.41455240361839	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTCTGTTTGTGAGGAT	1391	False	NA	NA	False	NA	NA	NA	6391189	6405645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6391376_6391488_6391547_6391773_6391865_6391932_6391998_6392284_6392341_6392639_6392688_6392773_6392817_6393133_6393207_6393284_6393417_6393490_6393554_6393831_6393914_6394001_6394110_6394436_6394516_6394619_6394679_6395348_6395393_6395473_6395513_6395606_6395641_6395757_6395867_6395945_6396035_6396113_6396156_6396238_6396324_6396417_6396498_6396574_6396636_6396721_6396840_6401209_6401269_6401344_6401449_6401526_6401705_6402613_6402683_6402804_6402892_6403149_6403221_6403307_6403364_6403469
transcript_67192.known	chr19	+	2875	31	FSM	ENSMUSG00000024948.16	ENSMUST00000123468.9	2875	31	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	5.4793551932078	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCACTAGTCTCTCTGAG	1481	False	NA	10	True	ATTAAA	-14	NA	6391279	6403898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6391376_6391488_6391547_6391773_6391998_6392284_6392341_6392639_6392688_6392773_6392817_6393133_6393207_6393284_6393417_6393490_6393554_6393831_6393914_6394001_6394110_6394436_6394516_6394619_6394679_6395348_6395393_6395473_6395513_6395606_6395641_6395757_6395867_6395945_6396035_6396113_6396156_6396238_6396324_6396417_6396498_6396574_6396636_6396721_6396840_6401209_6401269_6401344_6401449_6401526_6401705_6402613_6402683_6402804_6402892_6403149_6403221_6403307_6403364_6403469
transcript_67204.known	chr19	+	2282	14	FSM	ENSMUSG00000024949.18	ENSMUST00000113488.8	2282	14	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_13	335.352733135279	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTCCTTTCTTCAGAC	722	False	NA	NA	False	NA	NA	NA	6413839	6426542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687_6425893_6426325
transcript_67213.known	chr19	+	4353	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCCATCCTCTGGTCT	602	False	NA	22	True	AATAAA	-14	NA	6413719	6428060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
transcript_67215.known	chr19	+	2649	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	242.538814190407	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	834	False	NA	15	True	AATAAA	-15	NA	6413951	6427226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
transcript_67219.nnic	chr19	+	3518	13	NNC	ENSMUSG00000024949.18	novel	4353	13	NA	NA	-14	0	intron_retention	FALSE	canonical	3	70	junction_9	334.755663382513	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTTTTCTTTTAA	588	False	NA	21	True	AATAAA	-21	NA	6413705	6427232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424060_6424314_6424578_6424639_6424748_6424929_6425687
transcript_6723.nic	chr1	+	2860	15	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-6	1	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	109.828275047913	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9760	False	NA	6	True	AATAAA	-14	NA	175708353	175736299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_175708423_175708697_175708794_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
transcript_67241.known	chr19	+	3221	12	FSM	ENSMUSG00000024949.18	ENSMUST00000113485.9	3221	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	431.203485933256	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTTTTCTTTTAA	834	False	NA	21	True	AATAAA	-21	NA	6413951	6427232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6414149_6415693_6415823_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6425687
transcript_67262.known	chr19	+	2874	20	FSM	ENSMUSG00000032648.15	ENSMUST00000035269.15	2874	20	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	7.04005162408672	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTCTCTGTTGCAAAATA	NA	False	NA	14	True	AATAAA	-24	NA	6434428	6448489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6434752_6435714_6435817_6435895_6435975_6436053_6436158_6436403_6436536_6438092_6438205_6438296_6438380_6438766_6438911_6439189_6439283_6439485_6439633_6439802_6439967_6440360_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
transcript_67264.known	chr19	+	2296	17	FSM	ENSMUSG00000032946.17	ENSMUST00000113476.8	2296	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	87.7731450957524	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATCATCAGCCTAAAACCC	NA	False	NA	19	True	AATAAA	-21	NA	6449369	6465240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6449548_6451750_6451894_6452501_6452605_6453053_6453117_6453461_6453594_6454329_6454481_6454683_6454858_6454967_6455085_6457070_6457353_6458200_6458279_6458477_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
transcript_67265.nic	chr19	+	2261	17	NIC	ENSMUSG00000032946.17	novel	919	7	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	85.6383885518054	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGGATCATCAGCCTAA	NA	False	NA	14	True	AATAAA	-16	NA	6449851	6465235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_6449995_6451745_6451894_6452501_6452605_6453053_6453117_6453461_6453594_6454329_6454481_6454683_6454858_6454967_6455085_6457070_6457353_6458200_6458279_6458477_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
transcript_67268.nic	chr19	+	2326	16	ISM	ENSMUSG00000032946.17	ENSMUST00000167240.8	2192	17	925	10	-187	0	3prime_fragment	FALSE	canonical	0	0	junction_2	88.3572043217504	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGGATCATCAGCCTAA	NA	False	NA	14	True	AATAAA	-16	NA	6451537	6465235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461_6453594_6454329_6454481_6454683_6454858_6454967_6455085_6457070_6457353_6458200_6458279_6458477_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
transcript_6727.nic	chr1	+	3243	15	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-49	1	combination_of_known_junctions	FALSE	canonical	3	175	junction_2	73.1663257550206	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9504	False	NA	6	True	AATAAA	-14	NA	175708097	175736299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
transcript_67277.known	chr19	+	919	7	FSM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	53.7297765572209	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATCAGCCTAAAACCCT	NA	False	NA	20	True	AATAAA	-22	NA	6458434	6465241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
transcript_67281.nnic	chr19	+	620	5	NIC	ENSMUSG00000032946.17	novel	573	5	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	118.986081118759	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6449448	6453668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_6449548_6451745_6451894_6452501_6452605_6453053_6453117_6453461
transcript_67282.known	chr19	+	573	5	FSM	ENSMUSG00000032946.17	ENSMUST00000113475.8	573	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	121.807994401024	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGAGTGAGGGTCATG	NA	False	NA	9	True	NA	NA	NA	6449485	6453663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6449548_6451750_6451894_6452501_6452605_6453053_6453117_6453461
transcript_67284.known	chr19	+	453	5	FSM	ENSMUSG00000032946.17	ENSMUST00000150713.8	453	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	119.445332684036	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTGAACAGATCAAGGAG	NA	False	NA	NA	False	NA	NA	NA	6449897	6453508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6449995_6451750_6451894_6452501_6452605_6453053_6453117_6453461
transcript_67287.nic	chr19	+	739	5	ISM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	4572	6	4572	0	3prime_fragment	FALSE	canonical	3	149	junction_1	9.57535900110278	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGGATCATCAGCCTAA	NA	False	NA	14	True	AATAAA	-16	NA	6463006	6465235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
transcript_67289.known	chr19	+	535	4	FSM	ENSMUSG00000032946.17	ENSMUST00000113471.3	535	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	116.70761186258	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451731	6453668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461
transcript_67293.nnic	chr19	+	1973	4	NNC	ENSMUSG00000033768.18	novel	6667	23	NA	NA	-258	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	2.35702260395516	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTGGCCCAGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	6522880	6532727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_6523002_6523347_6523787_6531139_6531527_6531701
transcript_673.known	chr1	-	7567	16	FSM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_14	21.375375240371	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTTATTTTTGGCAGT	NA	False	NA	-1	True	AATAAA	-19	NA	30912662	30841419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_30845024_30845249_30845446_30847803_30847894_30849763_30849912_30850852_30851049_30852097_30852234_30853040_30853173_30855548_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30868923_30870641_30876185_30876348_30902067_30902337_30912658
transcript_67303.known	chr19	+	576	3	FSM	ENSMUSG00000033768.18	ENSMUST00000154580.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATATAACTACTACGTGC	NA	False	NA	NA	False	AAAAAG	-11	NA	6567234	6582326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6567279_6569278_6569358_6581873
transcript_67307.known	chr19	-	3140	17	FSM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_16	8.80961832317383	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGATCTGTGGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	6818004	6806577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641_6808816_6809135_6809230_6809318_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947_6815052_6815123_6815205_6815422_6815531_6816619_6816736_6816827_6817047_6817701_6817774_6817860
transcript_67324.known	chr19	-	2241	7	FSM	ENSMUSG00000024955.16	ENSMUST00000025906.12	2241	7	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	9.26762584963856	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGGTGGTCGGTGAGTCA	9685	False	NA	-1	True	AATATA	-16	NA	6899176	6888345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187_6891317_6891446_6891564_6897430_6897768_6898989
transcript_67325.nnic	chr19	-	2359	7	NIC	ENSMUSG00000024955.16	novel	2241	7	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	35.8457342882897	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGGTGGTCGGTGAGTCA	9664	False	NA	-1	True	AATATA	-16	NA	6899197	6888345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187_6891317_6891446_6891661_6897430_6897768_6898989
transcript_67327.known	chr19	+	957	5	FSM	ENSMUSG00000038812.17	ENSMUST00000088257.14	957	5	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_1	358.400875417458	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACATTAAAATAGAGTCT	9265	False	NA	37	True	ATTAAA	-37	NA	6887065	6888417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6887224_6887321_6887631_6887730_6887833_6887951_6888042_6888119
transcript_67329.known	chr19	+	985	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	23.6971634495683	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9314	False	NA	16	True	ATTAAA	-16	NA	6887114	6888396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
transcript_67330.known	chr19	+	646	3	FSM	ENSMUSG00000038812.17	ENSMUST00000174786.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	28.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9731	False	NA	16	True	ATTAAA	-16	NA	6887531	6888396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6887631_6887730_6887833_6887951
transcript_67334.known	chr19	-	1262	6	FSM	ENSMUSG00000024953.18	ENSMUST00000025904.12	1262	6	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_5	11.3912246927185	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTACAGGGTTGTCT	NA	False	NA	-9	True	AATAAA	-21	NA	6887474	6884073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
transcript_67336.known	chr19	-	784	5	FSM	ENSMUSG00000050623.6	ENSMUST00000057716.6	784	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	4.76969600708473	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCGTGGCTGCTTGC	7390	False	NA	1	True	ATTAAA	-22	NA	6902748	6899790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902475_6902659
transcript_67337.known	chr19	-	806	5	FSM	ENSMUSG00000050623.6	ENSMUST00000237380.2	806	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	16.5529453572468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCGTGGCTGCTTGC	7411	False	NA	1	True	ATTAAA	-22	NA	6902727	6899790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902518_6902659
transcript_67341.known	chr19	-	1161	7	FSM	ENSMUSG00000024958.14	ENSMUST00000235237.2	1161	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	10.2048463432278	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGATCCCTGGCCCCTG	7167	False	NA	NA	False	NA	NA	NA	6918207	6915699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917055_6917719_6917770_6917850
transcript_67342.known	chr19	-	1858	7	FSM	ENSMUSG00000024958.14	ENSMUST00000166115.9	1858	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	2.47767812455308	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTCTGTTCCTTCTCACC	6813	False	NA	1	True	AATAAA	-32	NA	6918561	6915424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850
transcript_67346.known	chr19	+	1452	4	FSM	ENSMUSG00000024959.15	ENSMUST00000025910.13	1452	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	43.6526695123626	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTATCCTTCGTTTGGG	8681	False	NA	16	True	AATAAA	-21	NA	6919228	6929267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6919809_6920234_6920415_6928007_6928199_6928766
transcript_67348.known	chr19	+	990	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	15.9234278833282	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9321	False	NA	10	True	AATAAA	-15	NA	6919868	6929261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
transcript_67349.known	chr19	+	668	2	FSM	ENSMUSG00000024959.15	ENSMUST00000145463.2	668	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGCCTGCGCATGTGCC	1022	False	NA	-9	True	NA	NA	NA	6928134	6929242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6928199_6928638
transcript_67362.known	chr19	-	4257	31	FSM	ENSMUSG00000024960.10	ENSMUST00000025912.10	4257	31	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_24	50.7714377272191	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTACAGTGTAGTTT	4311	False	NA	-8	True	AATAAA	-16	NA	6947182	6931080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946914
transcript_67363.nnic	chr19	-	4164	31	NIC	ENSMUSG00000024960.10	novel	4257	31	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_30	127.230940506711	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTACAGTGTAGTTT	NA	False	NA	-8	True	AATAAA	-16	NA	6951737	6931080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6951562
transcript_6739.nic	chr1	+	1898	12	ISM	ENSMUSG00000039748.12	ENSMUST00000039725.12	7796	15	7	12571	7	0	5prime_fragment	FALSE	canonical	3	208	junction_2	61.4483590215905	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAAAGCGGCCAGC	9560	False	NA	NA	False	NA	NA	NA	175708153	175728484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445
transcript_67425.nic	chr19	-	2109	14	ISM	ENSMUSG00000024960.10	ENSMUST00000025912.10	4257	31	-242	8198	-242	0	5prime_fragment	FALSE	canonical	3	577	junction_7	46.7622717494734	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAACAACGGATCCAAAAAA	4069	False	NA	NA	False	NA	NA	NA	6947424	6939278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946914
transcript_67434.known	chr19	+	999	4	FSM	ENSMUSG00000056612.8	ENSMUST00000070850.8	999	4	0	0	0	0	multi-exon	FALSE	canonical	3	3100	junction_3	78.5295415043848	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTTGGCTGGTCTTTTA	1580	False	NA	NA	False	AATAAA	-29	NA	6952335	6954692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6952875_6953911_6953996_6954225_6954259_6954349
transcript_67436.known	chr19	+	605	4	FSM	ENSMUSG00000056612.8	ENSMUST00000236218.2	605	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	1483.18268897964	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACAGCAATACCGGGGGA	1870	False	NA	NA	False	NA	NA	NA	6952625	6954477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6952986_6953911_6953996_6954225_6954259_6954349
transcript_67441.known	chr19	-	664	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	164.60571071503	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957869	6955111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
transcript_67442.known	chr19	-	642	6	FSM	ENSMUSG00000056629.17	ENSMUST00000070878.9	642	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	200.859752065963	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTCTGTATTTCT	NA	False	NA	-3	True	TTTAAA	-35	NA	6957808	6955108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6957761
transcript_67444.known	chr19	-	1158	7	FSM	ENSMUSG00000024962.14	ENSMUST00000130048.8	1158	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	60.459352736639	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	4780	False	NA	-1	True	GATAAA	-17	NA	6964997	6959840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6960236_6962728_6962864_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
transcript_67446.known	chr19	-	1281	7	FSM	ENSMUSG00000024962.14	ENSMUST00000025914.7	1281	7	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_2	52.2323867176508	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	4758	False	NA	-1	True	GATAAA	-17	NA	6965019	6959840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6960236_6962728_6962965_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
transcript_67447.nnic	chr19	-	1214	6	NIC	ENSMUSG00000024962.14	novel	1158	7	NA	NA	-77	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_5	103.315826473973	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	4681	False	NA	-1	True	GATAAA	-17	NA	6965096	6959840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_6960236_6962728_6962864_6963172_6963209_6963388_6963463_6963657_6963855_6964719
transcript_67448.nnic	chr19	-	1315	6	NIC	ENSMUSG00000024962.14	novel	1281	7	NA	NA	-77	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_5	99.8651090221204	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	4681	False	NA	-1	True	GATAAA	-17	NA	6965096	6959840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_6960236_6962728_6962965_6963172_6963209_6963388_6963463_6963657_6963855_6964719
transcript_6745.nic	chr1	+	2108	12	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	175	junction_2	69.5157987869789	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAAAGCGGCCAGC	9504	False	NA	NA	False	NA	NA	NA	175708097	175728484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445
transcript_67450.nnic	chr19	-	1161	5	NNC	ENSMUSG00000024962.14	novel	1281	7	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116.095596385048	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	4703	False	NA	-1	True	GATAAA	-17	NA	6965074	6959840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_6960236_6962728_6962900_6963657_6963855_6964141_6964185_6964719
transcript_67454.nnic	chr19	-	940	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	72.0819364026491	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9935	False	NA	-4	True	AATAAA	-17	NA	6969950	6965278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969853
transcript_67455.nnic	chr19	-	900	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_6	60.0194412947449	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9912	False	NA	-4	True	AATAAA	-17	NA	6969973	6965278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969916
transcript_67456.known	chr19	-	840	6	FSM	ENSMUSG00000024963.13	ENSMUST00000179118.2	840	6	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_3	69.5097115516961	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9507	False	NA	-4	True	AATAAA	-17	NA	6969640	6965278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6965477_6965556_6965644_6966790_6966953_6967048_6967234_6968085_6968180_6969526
transcript_67457.nnic	chr19	-	777	6	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_5	77.5035483058679	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9921	False	NA	-4	True	AATAAA	-17	NA	6969964	6965278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969916
transcript_67461.nic	chr19	-	1159	5	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	8	0	intron_retention	FALSE	canonical	3	188	junction_2	20.6942020865749	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9284	False	NA	-4	True	AATAAA	-17	NA	6969863	6965278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_6965477_6965556_6965644_6966790_6967234_6968085_6968180_6969526
transcript_67470.known	chr19	-	1000	6	FSM	ENSMUSG00000037349.10	ENSMUST00000041686.10	1000	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	17.04582060213	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	7045	False	NA	-3	True	AATAAA	-17	NA	6973405	6970385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973375
transcript_67474.known	chr19	-	1073	6	FSM	ENSMUSG00000037349.10	ENSMUST00000180765.2	1073	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	58.0427428710946	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	6965	False	NA	-3	True	AATAAA	-17	NA	6973485	6970385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973382
transcript_67475.known	chr19	-	2587	15	FSM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	9.77945576717032	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACTGAGCTTGGGGCCA	5432	False	NA	13	True	AATAAA	-38	NA	6996837	6976325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427_6991597_6991695_6991816_6991984_6992219_6996033_6996208_6996645
transcript_67478.known	chr19	+	1103	7	FSM	ENSMUSG00000047656.10	ENSMUST00000088223.7	1103	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	9.59166304662544	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	38	True	ATTAAA	-44	NA	6973539	6976414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
transcript_67480.known	chr19	+	972	6	FSM	ENSMUSG00000047656.10	ENSMUST00000237234.2	972	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	13.8650640099496	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTGGTTCCTCATC	NA	False	NA	36	True	ATTAAA	-42	NA	6973498	6976412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_6973893_6974063_6974146_6975559_6975735_6975876_6975934_6976025_6976137_6976259
transcript_67485.nnic	chr19	-	765	3	NNC	ENSMUSG00000024965.10	novel	2988	14	NA	NA	19374	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	9.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	8113	False	NA	-8	True	AATAAA	-17	NA	6977339	6976346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_6976889_6977006_6977149_6977258
transcript_67489.known	chr19	-	2108	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	0	0	0	0	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	2086	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3763	False	NA	-8	True	AATAAA	-29	NA	7017335	6998069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
transcript_67512.known	chr19	+	1228	11	FSM	ENSMUSG00000036278.8	ENSMUST00000040261.7	1228	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	10.4383906805599	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTCTGGGTCTGGC	8532	False	NA	6	True	AATAAA	-16	NA	7034177	7175422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066_7175102_7175277
transcript_67513.nic	chr19	+	1507	10	ISM	ENSMUSG00000036278.8	ENSMUST00000040261.7	1228	11	-103	0	-103	0	intron_retention	FALSE	canonical	3	30	junction_9	9.49983755546625	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTCTGGGTCTGGC	8429	False	NA	6	True	AATAAA	-16	NA	7034074	7175422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066
transcript_67514.nnic	chr19	+	1301	10	NIC	ENSMUSG00000036278.8	novel	1228	11	NA	NA	-103	5	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	15.0185071014251	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTGGGTCTGGCTGGGT	8429	False	NA	11	True	AATAAA	-21	NA	7034074	7175427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175277
transcript_67518.known	chr19	-	1713	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	0	0	0	0	multi-exon	TRUE	canonical	3	1089	junction_1	76.373351955305	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTGGCCCATGCATC	NA	False	NA	2	True	AATAAA	-26	NA	7183681	7175566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
transcript_67525.known	chr19	-	550	2	FSM	ENSMUSG00000035885.6	ENSMUST00000039758.6	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	12296	junction_1	0	3579	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCATGTCCTTCTGCAC	7366	False	NA	NA	False	AATAAA	-26	NA	7194981	7192517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7192850_7194763
transcript_67528.known	chr19	-	3231	8	FSM	ENSMUSG00000024764.11	ENSMUST00000025675.11	3231	8	0	0	0	0	multi-exon	TRUE	canonical	3	441	junction_1	30.7431757816732	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	-20	True	AATAAA	-16	NA	7218548	7203037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
transcript_67532.known	chr19	-	3993	7	FSM	ENSMUSG00000024764.11	ENSMUST00000236628.2	3993	7	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	32.7078821624934	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGGCATCCAGATACT	NA	False	NA	-15	True	AATAAA	-21	NA	7218399	7203032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7212524_7218302
transcript_67535.nnic	chr19	-	3122	7	NIC	ENSMUSG00000024764.11	novel	3231	8	NA	NA	-50	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_3	179.745576363432	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	-20	True	AATAAA	-16	NA	7218598	7203037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_7205457_7205716_7205795_7207086_7207171_7207552_7207649_7211468_7211522_7212427_7212524_7218302
transcript_67536.known	chr19	-	3324	7	FSM	ENSMUSG00000024764.11	ENSMUST00000236769.2	3324	7	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_3	27.2605738914075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTTGTATGTCATTA	NA	False	NA	-2	True	NA	NA	NA	7218421	7203077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
transcript_67537.known	chr19	-	1569	6	FSM	ENSMUSG00000024764.11	ENSMUST00000237834.2	1569	6	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	33.2060235499525	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGCAAAGGTTTGCACT	NA	False	NA	NA	False	NA	NA	NA	7218419	7204793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7205457_7205716_7205795_7207086_7207649_7211468_7211522_7212427_7212524_7218302
transcript_67538.known	chr19	-	4520	1	FSM	ENSMUSG00000024764.11	ENSMUST00000235323.2	4520	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACAAAAAACAAAACC	NA	False	NA	NA	False	NA	NA	NA	7218419	7213899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7213900_7218400
transcript_67544.nic	chr19	+	2419	13	NIC	ENSMUSG00000024968.15	novel	2823	12	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	300.802676184904	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTTCCATGTGTGCTG	NA	False	NA	22	True	AATAAA	-17	NA	7244621	7252590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_7244790_7246215_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
transcript_67560.known	chr19	+	2823	12	FSM	ENSMUSG00000024968.15	ENSMUST00000066646.12	2823	12	0	0	0	0	multi-exon	FALSE	canonical	3	1016	junction_11	65.835633045581	4201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTTCCATGTGTGCTG	NA	False	NA	22	True	AATAAA	-17	NA	7245643	7252590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
transcript_67603.known	chr19	+	2013	11	FSM	ENSMUSG00000024968.15	ENSMUST00000113369.3	2013	11	0	0	0	0	multi-exon	FALSE	canonical	3	1016	junction_10	67.7507195533745	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTCTTCCATGTGTGCT	NA	False	NA	21	True	AATAAA	-16	NA	7247128	7252589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
transcript_67611.nic	chr19	-	3531	20	NIC	ENSMUSG00000024969.16	novel	2660	19	NA	NA	-9	0	intron_retention	FALSE	canonical	0	0	junction_5	122.221904361768	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGGCCACCTTTCCT	3851	False	NA	NA	False	AAGAAA	-39	NA	7319234	7254097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_7254816_7255406_7255452_7256475_7256644_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
transcript_67612.nic	chr19	-	2943	20	NIC	ENSMUSG00000024969.16	novel	2660	19	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	120.360883937729	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGGCCACCTTTCCT	3840	False	NA	NA	False	AAGAAA	-39	NA	7319245	7254097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_7254816_7255406_7255452_7256475_7256644_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
transcript_67631.known	chr19	-	2660	19	FSM	ENSMUSG00000024969.16	ENSMUST00000171721.8	2660	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	113.063799863202	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	4528	False	NA	NA	False	AAGAAA	-13	NA	7318557	7254123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
transcript_67633.nic	chr19	-	2775	19	NIC	ENSMUSG00000024969.16	novel	2660	19	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	110.626498734355	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGGCCACCTTTCCT	3840	False	NA	NA	False	AAGAAA	-39	NA	7319245	7254097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
transcript_6764.known	chr1	+	2776	18	FSM	ENSMUSG00000026504.18	ENSMUST00000027785.15	2776	18	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_6	3.6941925807312	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGAGTTGTTCCGTTTCCT	NA	False	NA	7	True	AATAAA	-17	NA	176642225	176848003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_176642622_176652317_176652471_176653764_176653851_176656435_176656550_176658622_176658749_176667850_176667992_176672389_176672455_176672746_176672936_176681329_176681469_176695777_176695931_176702129_176702265_176705555_176705673_176747109_176747253_176773673_176773802_176775846_176775956_176783357_176783490_176839454_176839582_176847680
transcript_67655.known	chr19	-	3018	18	FSM	ENSMUSG00000024969.16	ENSMUST00000025921.15	3018	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	103.565869249268	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	3138	False	NA	NA	False	AAGAAA	-13	NA	7272812	7254123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7272402
transcript_67656.known	chr19	-	2874	18	FSM	ENSMUSG00000024969.16	ENSMUST00000165965.8	2874	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	87.3120720397554	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	4287	False	NA	NA	False	AAGAAA	-13	NA	7318798	7254123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
transcript_67658.nic	chr19	-	2748	18	NIC	ENSMUSG00000024969.16	novel	3018	18	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	83.0892712064523	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGGCCACCTTTCCT	3840	False	NA	NA	False	AAGAAA	-39	NA	7319245	7254097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
transcript_6766.known	chr1	-	4906	14	FSM	ENSMUSG00000019699.17	ENSMUST00000111159.2	4906	14	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_13	3.68910117177901	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTCTGTTTGTTGTTG	NA	False	NA	-8	True	AATAAA	-18	NA	177085769	176849681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_176853016_176859215_176859319_176871340_176871429_176877603_176877819_176886899_176887029_176894776_176894900_176906339_176906409_176907766_176907833_176924532_176924665_176930527_176930673_176937192_176937305_176958536_176958663_177076241_177076448_177085711
transcript_67675.known	chr19	-	3104	17	FSM	ENSMUSG00000024969.16	ENSMUST00000164205.8	3104	17	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_3	67.4368917952184	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCGGCCACCTTTCCT	3921	False	NA	NA	False	AAGAAA	-39	NA	7319164	7254097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
transcript_67695.nnic	chr19	-	1980	6	NNC	ENSMUSG00000024970.6	novel	3152	6	NA	NA	-89	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_1	121.287097417656	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGTGGGCTATCATT	NA	False	NA	NA	False	AATAAA	-21	NA	7360448	7335050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_7335815_7351021_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
transcript_67699.known	chr19	-	3152	6	FSM	ENSMUSG00000024970.6	ENSMUST00000025924.4	3152	6	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_2	10.2293694820355	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGTCTCTAGGTGCTT	NA	False	NA	NA	False	NA	NA	NA	7360359	7333827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
transcript_67703.nic	chr19	-	2093	5	NIC	ENSMUSG00000024970.6	novel	3152	6	NA	NA	-89	0	intron_retention	FALSE	canonical	3	309	junction_2	11.4345966260293	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGTGGGCTATCATT	NA	False	NA	NA	False	AATAAA	-21	NA	7360448	7335050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7352216_7360036
transcript_67706.known	chr19	-	1477	5	FSM	ENSMUSG00000024970.6	ENSMUST00000236817.2	1477	5	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_1	7.5291101731878	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAACAAAGCATAACGTGG	NA	False	NA	NA	False	ATTAAA	-7	NA	7360286	7350598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
transcript_67709.known	chr19	-	2898	8	FSM	ENSMUSG00000024758.16	ENSMUST00000025667.14	2898	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	306.474621914362	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	8960	False	NA	-18	True	AATAAA	-17	NA	7460646	7403265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7445175_7445233_7460303
transcript_6771.known	chr1	-	2771	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCTAAAAGACCAATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	177624077	177590527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
transcript_67713.known	chr19	-	2762	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	9039	False	NA	-18	True	AATAAA	-17	NA	7460567	7403265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
transcript_67717.known	chr19	+	7540	13	FSM	ENSMUSG00000024759.15	ENSMUST00000170373.9	7540	13	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_1	12.0355376559033	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGTCCTCATTCTTTAA	NA	False	NA	NA	False	AGTAAA	-19	NA	7471404	7517039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_7471727_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
transcript_67718.known	chr19	+	4368	13	FSM	ENSMUSG00000024759.15	ENSMUST00000025668.9	4368	13	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	6.18409698788397	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAATAGTTCTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	7471802	7513965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_7472027_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
transcript_67721.known	chr19	+	3523	5	FSM	ENSMUSG00000060675.14	ENSMUST00000025925.11	3523	5	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_1	31.8825971338597	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTGCTGTAGTCATGG	NA	False	NA	NA	False	NA	NA	NA	7534823	7565910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_7534930_7535296_7535361_7552301_7552405_7556318_7556588_7562929
transcript_67722.known	chr19	+	1901	5	FSM	ENSMUSG00000060675.14	ENSMUST00000136756.2	1901	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	71.8135606971274	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAGAAGGAGAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	7534849	7564076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_7535168_7535296_7535361_7552301_7552405_7556318_7556588_7562929
transcript_67723.known	chr19	-	2470	10	FSM	ENSMUSG00000024972.17	ENSMUST00000159983.8	2470	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	5.03322295684717	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACTCATATGTTAGTGGT	NA	False	NA	NA	False	ATTAAA	-17	NA	7584558	7574024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_7575537_7576124_7576276_7578012_7578102_7578610_7578638_7579407_7579447_7580373_7580494_7581333_7581548_7581668_7581758_7584026_7584189_7584491
transcript_67736.known	chr19	-	2813	10	FSM	ENSMUSG00000010095.14	ENSMUST00000170157.8	2813	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	923.220423635268	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATGGATGAGTGATCAAA	9029	False	NA	NA	False	AATAAA	-17	NA	8700733	8684245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
transcript_67739.known	chr19	-	1819	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	2292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGGGTGTTTTTGTCT	NA	False	NA	-18	True	TTTAAA	-26	NA	8691243	8684980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
transcript_67762.known	chr19	-	1393	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	0	0	0	0	multi-exon	FALSE	canonical	3	2940	junction_7	103.964868477534	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	NA	False	NA	12	True	AATAAA	-2	NA	8690349	8684950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
transcript_67764.known	chr19	+	605	10	FSM	ENSMUSG00000108414.2	ENSMUST00000206155.2	605	10	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_1	203.637719952995	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700838	8703807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_67770.known	chr19	+	744	8	FSM	ENSMUSG00000108414.2	ENSMUST00000206135.2	744	8	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	116.047316176794	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701521	8703807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8701554_8701766_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_67771.known	chr19	+	709	9	FSM	ENSMUSG00000108414.2	ENSMUST00000205909.2	709	9	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	124.260814418706	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701368	8703807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_67772.known	chr19	+	510	6	FSM	ENSMUSG00000108414.2	ENSMUST00000205852.2	510	6	0	0	0	0	multi-exon	FALSE	canonical	3	951	junction_1	74.1145060025364	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8702260	8703807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_67773.known	chr19	+	1078	11	FSM	ENSMUSG00000042729.12	ENSMUST00000210512.2	1078	11	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_5	341.044410597799	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGATCCTGGACCTTTTG	963	False	NA	22	True	AATAAA	-15	NA	8713190	8717982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715227_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
transcript_67774.known	chr19	+	1204	11	FSM	ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	0	0	0	0	multi-exon	FALSE	canonical	3	1012	junction_8	78.6635875103596	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGACCTTTTGTGATGG	975	False	NA	28	True	AATAAA	-21	NA	8713202	8717988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
transcript_67792.known	chr19	+	2251	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	18.8417090519942	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGGAAGCAGGTGAATT	6549	False	NA	NA	False	ATTAAA	-19	NA	8718776	8733433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_67795.nic	chr19	+	2024	11	NIC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.2485293921929	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6928	False	NA	12	True	NA	NA	NA	8719155	8733006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_8719519_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_67796.nnic	chr19	+	1985	11	NNC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	54.6512579910106	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6934	False	NA	12	True	NA	NA	NA	8719161	8733006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_8719486_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_67798.known	chr19	+	2112	10	FSM	ENSMUSG00000010110.18	ENSMUST00000073430.14	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	5.51764845241562	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6939	False	NA	12	True	NA	NA	NA	8719166	8733006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_67799.known	chr19	+	2106	10	FSM	ENSMUSG00000010110.18	ENSMUST00000176013.8	2106	10	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	59.188545772111	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	7024	False	NA	12	True	NA	NA	NA	8719251	8733006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720867_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_67813.known	chr19	+	1720	11	FSM	ENSMUSG00000010110.18	ENSMUST00000175872.8	1720	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	60.8157874239905	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTATTTCCTCCCAATTA	6624	False	NA	-28	True	NA	NA	NA	8718851	8732966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726264_8727029_8727137_8727269_8727392_8732272
transcript_67816.known	chr19	+	2326	21	FSM	ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	71.7857924661976	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGGCTTGTTTCCCTCA	8569	False	NA	47	True	GATAAA	-26	NA	8734436	8748286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
transcript_67823.known	chr19	+	4042	20	FSM	ENSMUSG00000010097.16	ENSMUST00000184970.9	4042	20	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	65.017278760312	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTTGTGTCCCATTACT	8603	False	NA	32	True	GATAAA	-11	NA	8734470	8748271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
transcript_67832.known	chr19	+	748	2	FSM	ENSMUSG00000117924.2	ENSMUST00000010248.4	748	2	0	0	0	0	multi-exon	FALSE	canonical	3	838	junction_1	0	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCATTCTGTCCTCTCTCTC	6519	False	NA	NA	False	AATAAA	-38	NA	8748359	8749839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8748680_8749411
transcript_67833.known	chr19	-	775	5	FSM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	80.9073544246751	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5074	False	NA	-4	True	AATATA	-17	NA	8751831	8749888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8750987_8751698
transcript_67834.known	chr19	-	818	5	FSM	ENSMUSG00000118346.2	ENSMUST00000010249.7	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	40.2833712591188	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATATATTACTTTTC	5074	False	NA	-31	True	NA	NA	NA	8751831	8749915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751057_8751698
transcript_67836.nnic	chr19	-	650	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_3	106.565577097965	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5080	False	NA	-5	True	AATATA	-16	NA	8751825	8749889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_8750199_8750391_8750471_8750653_8750789_8751698
transcript_67838.nnic	chr19	-	644	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	101.226917807908	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5069	False	NA	-5	True	AATATA	-16	NA	8751836	8749889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_8750199_8750391_8750471_8750868_8750987_8751698
transcript_67849.nnic	chr19	-	2257	13	NIC	ENSMUSG00000003680.17	novel	2065	12	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_11	69.7284415110187	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9904	False	NA	-3	True	AATAAA	-14	NA	8763677	8751855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8762996_8763192_8763573
transcript_67853.known	chr19	-	2167	12	FSM	ENSMUSG00000003680.17	ENSMUST00000177216.8	2167	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	58.9043207945263	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9960	False	NA	-3	True	AATAAA	-14	NA	8763621	8751855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762539_8763408
transcript_67854.known	chr19	-	2065	12	FSM	ENSMUSG00000003680.17	ENSMUST00000176610.9	2065	12	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	26.5722156514676	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9901	False	NA	-3	True	AATAAA	-14	NA	8763680	8751855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
transcript_67858.known	chr19	-	2006	11	FSM	ENSMUSG00000003680.17	ENSMUST00000177056.8	2006	11	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	58.7504042539283	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGACGTGTCTATGCTCG	9901	False	NA	-5	True	AATAAA	-12	NA	8763680	8751857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8763573
transcript_67863.known	chr19	-	790	6	FSM	ENSMUSG00000003680.17	ENSMUST00000176331.2	790	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	82.2377042481124	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTCCTTGGGCCGTGGG	9952	False	NA	NA	False	NA	NA	NA	8763629	8759174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8763573
transcript_67867.known	chr19	-	890	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	79.6292429106959	1045	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	-1	True	ATTAAA	-17	NA	8775941	8770490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
transcript_67874.nnic	chr19	+	1924	2	NNC	ENSMUSG00000071661.8	novel	2004	2	NA	NA	-77	-3	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCCCTTTGAACTGGTGT	5351	False	NA	9	True	CATAAA	-14	NA	8779841	8782207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_8779896_8780337
transcript_67875.known	chr19	+	2004	2	FSM	ENSMUSG00000071661.8	ENSMUST00000172175.3	2004	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGAACTGGTGTTGG	5428	False	NA	12	True	CATAAA	-17	NA	8779918	8782210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8780050_8780337
transcript_67876.known	chr19	-	3509	4	FSM	ENSMUSG00000071660.11	ENSMUST00000096751.11	3509	4	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_3	24.7116706571342	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGCATCTTAGAAATT	1885	False	NA	-13	True	AATAAA	-11	NA	8796697	8786438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8789203_8793217_8793401_8795799_8796049_8796384
transcript_67882.known	chr19	-	600	2	FSM	ENSMUSG00000071660.11	ENSMUST00000148090.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACCCTGTATCAAAAAGC	1986	False	NA	NA	False	NA	NA	NA	8796596	8795660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8796049_8796384
transcript_67886.known	chr19	+	5118	14	FSM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	16.0266050992067	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTATCTCCTGTGGCT	NA	False	NA	15	True	AATAAA	-18	NA	8797373	8811507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8798178_8800167_8800304_8800593_8800671_8800893_8801034_8801584_8801676_8801769_8801883_8802223_8802488_8802634_8802758_8803335_8803465_8804007_8804177_8807113_8807315_8808251_8808326_8808588_8808697_8808818
transcript_67892.known	chr19	+	1684	12	FSM	ENSMUSG00000071657.13	ENSMUST00000159634.8	1684	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	50.3060057535483	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	NA	False	NA	14	True	AATAAA	-14	NA	8815092	8826031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_67894.known	chr19	+	1795	11	FSM	ENSMUSG00000071657.13	ENSMUST00000160556.8	1795	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	47.8256207487158	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8816691	8826030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_67897.nic	chr19	+	2150	10	ISM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	-153	7380	-153	3513	5prime_fragment	FALSE	canonical	3	91	junction_1	17.6194337152033	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGGAGGGAGATGATGT	NA	False	NA	NA	False	NA	NA	NA	8797220	8804127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_8798178_8800167_8800304_8800593_8800671_8800893_8801034_8801584_8801676_8801769_8801883_8802223_8802488_8802634_8802758_8803335_8803465_8804007
transcript_67903.nic	chr19	+	2165	8	ISM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	-477	8810	-477	2083	5prime_fragment	FALSE	canonical	3	91	junction_1	15.3569767432876	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAACCCTGAGAGAAGATA	NA	False	NA	NA	False	NA	NA	NA	8796896	8802697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_8798178_8800167_8800304_8800593_8800671_8800893_8801034_8801584_8801676_8801769_8801883_8802223_8802488_8802634
transcript_67904.nic	chr19	+	1323	4	ISM	ENSMUSG00000071657.13	ENSMUST00000171649.8	1962	12	-5	5281	-5	3159	5prime_fragment	FALSE	canonical	3	57	junction_1	48.787521173167	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGAATTAATGTCATTT	NA	False	NA	NA	False	AATAAA	-13	NA	8814825	8820766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372
transcript_67905.nic	chr19	+	1438	3	ISM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	-477	10893	-477	0	5prime_fragment	FALSE	canonical	3	91	junction_1	3.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAAGAAGCAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	8796896	8800614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_8798178_8800167_8800304_8800593
transcript_67907.known	chr19	-	1643	3	FSM	ENSMUSG00000071658.6	ENSMUST00000096259.6	1643	3	0	0	0	0	multi-exon	TRUE	canonical	3	189	junction_2	8	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGGGGCTTTTTTATT	4762	False	NA	NA	False	AATAAA	-14	NA	8816558	8814296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8815636_8815917_8816018_8816354
transcript_67910.known	chr19	+	1388	11	FSM	ENSMUSG00000071657.13	ENSMUST00000086058.13	1388	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	60.1671837466239	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8817882	8826030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8817933_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_67911.known	chr19	+	1911	10	FSM	ENSMUSG00000071657.13	ENSMUST00000162071.8	1911	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	49.7082848250361	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8817898	8826030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_67912.known	chr19	+	2583	2	FSM	ENSMUSG00000071656.8	ENSMUST00000096257.3	2583	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAATATACAGACTTTTGT	1435	False	NA	NA	False	ATTAAA	-19	NA	8828148	8831273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8828477_8829018
transcript_67913.known	chr19	+	1033	10	FSM	ENSMUSG00000071655.13	ENSMUST00000166407.9	1033	10	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	323.787653323045	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTATATGCCTGGCTC	5912	False	NA	25	True	AATAAA	-13	NA	8848922	8853020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8848950_8849034_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
transcript_67916.known	chr19	+	1291	9	FSM	ENSMUSG00000071655.13	ENSMUST00000238036.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_4	107.257575490032	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGGGGCTGGAGAG	5946	False	NA	3	True	ATTAAA	-16	NA	8848956	8853227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
transcript_67928.known	chr19	+	1127	8	FSM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	101.556257657457	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	6013	False	NA	33	True	AATAAA	-21	NA	8849023	8853028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
transcript_67929.known	chr19	-	821	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGGAAAGACCATCTC	NA	False	NA	-8	True	AATGAA	-25	NA	8858287	8857377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8857981_8858069
transcript_67933.known	chr19	+	500	5	FSM	ENSMUSG00000071653.10	ENSMUST00000185488.7	500	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	1592.05511839258	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTCAACAGCACTGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	8866278	8867910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8866329_8866487_8866613_8867000_8867092_8867366_8867465_8867774
transcript_67938.known	chr19	+	806	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCAACATTTGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	8866216	8868245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
transcript_67939.known	chr19	+	568	4	FSM	ENSMUSG00000116347.2	ENSMUST00000191089.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	1520.70166553324	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAGTTTATCCGGGCCA	NA	False	NA	NA	False	NA	NA	NA	8866289	8872428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8872122
transcript_67947.known	chr19	+	3274	2	FSM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	0	840	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCAGTGTTTCTATCTG	NA	False	NA	20	True	AATAAA	-21	NA	8870368	8875252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8870513_8872122
transcript_67949.known	chr19	+	784	3	FSM	ENSMUSG00000071653.10	ENSMUST00000186647.7	784	3	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_1	112.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866262	8868110	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8866613_8867366_8867465_8867774
transcript_67950.known	chr19	+	830	4	FSM	ENSMUSG00000071653.10	ENSMUST00000190843.2	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	1438.49141657347	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGTGGGATGAAGTGCAG	NA	False	NA	27	True	AATAAA	-16	NA	8866302	8868105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8866613_8867000_8867092_8867366_8867465_8867774
transcript_67955.known	chr19	+	3860	25	FSM	ENSMUSG00000071650.7	ENSMUST00000096246.5	3860	25	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_6	273.686404967234	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1893	False	NA	-56	True	GATAAA	-42	NA	8875464	8894036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
transcript_67961.known	chr19	+	3788	24	FSM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	142.157557894544	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1899	False	NA	-56	True	GATAAA	-42	NA	8875470	8894036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
transcript_6797.known	chr1	-	1733	7	FSM	ENSMUSG00000015961.9	ENSMUST00000161808.2	1733	7	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	54.6130326326357	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAACAAAAC	NA	False	NA	NA	False	GGGGCT	-8	NA	177624067	177602183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
transcript_6798.known	chr1	+	2590	6	FSM	ENSMUSG00000026502.14	ENSMUST00000161075.8	2590	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	77.2321176713419	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCTGATTTTGATTGAT	NA	False	NA	23	True	AGTAAA	-20	NA	178014982	178078467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_178015524_178025783_178025857_178065477_178065551_178070177_178070272_178071906_178072049_178076800
transcript_67983.known	chr19	+	1603	5	FSM	ENSMUSG00000071649.7	ENSMUST00000096243.7	1603	5	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	18.060661671157	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTCATGGTTTCCTTC	4712	False	NA	19	True	AATAAA	-16	NA	8897737	8904600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8898013_8899169_8899345_8902901_8903263_8903445_8903737_8904099
transcript_67984.known	chr19	+	909	5	FSM	ENSMUSG00000071649.7	ENSMUST00000237071.2	909	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	75.1644031440415	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATTGAGGTGTGATGGC	4822	False	NA	NA	False	NA	NA	NA	8897847	8904182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8898013_8899169_8899345_8903067_8903263_8903445_8903737_8904099
transcript_67986.known	chr19	-	1517	3	FSM	ENSMUSG00000071648.5	ENSMUST00000096242.5	1517	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTCTCCCGCTCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	8906720	8904754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_8905252_8905341_8905589_8905947
transcript_67987.known	chr19	+	2978	22	FSM	ENSMUSG00000071647.6	ENSMUST00000224272.2	2978	22	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	11.2769706937285	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	2256	False	NA	6	True	AATAAA	-14	NA	8907256	8918946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8907317_8908162_8908335_8908410_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
transcript_67988.known	chr19	+	3322	22	FSM	ENSMUSG00000071647.6	ENSMUST00000096241.6	3322	22	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	12.0183155765295	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	1915	False	NA	6	True	AATAAA	-14	NA	8906915	8918946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8907317_8908162_8908335_8908407_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
transcript_68.known	SIRV1	+	464	3	FSM	SIRV1B	SIRV109	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	3494	junction_2	198.5	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTTCGGCTAATCATGT	NA	False	NA	NA	False	NA	NA	NA	10711	11643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV1_+_10792_10882_11058_11434
transcript_68017.known	chr19	+	3135	18	FSM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	72.954410564141	3234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCAGCTATTCTGTGTG	3469	False	NA	20	True	AATAAA	-24	NA	8919238	8929667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
transcript_6802.known	chr1	+	8802	5	FSM	ENSMUSG00000026502.14	ENSMUST00000027783.14	8802	5	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_4	12.7573508221731	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGATCCATTTTTTCTTA	NA	False	NA	NA	False	AATAAA	-39	NA	178015097	178084867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_178015524_178065477_178065551_178070177_178070272_178071906_178072049_178076800
transcript_68022.known	chr19	+	2753	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_7	18.3234822018087	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTTCTTTTGCATAC	1357	False	NA	11	True	AATAAA	-26	NA	8931210	8943574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
transcript_68030.known	chr19	+	1858	5	FSM	ENSMUSG00000071645.7	ENSMUST00000236564.2	1858	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	17.1955662890176	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTGTCCGCATCTCA	1440	False	NA	NA	False	AATAAA	-24	NA	8931293	8940865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707
transcript_68036.known	chr19	+	1864	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	0	0	0	0	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	2272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTTTTCTGTCATAGC	843	False	NA	NA	False	AAGAAA	-37	NA	8944404	8955843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
transcript_68044.nic	chr19	+	887	7	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	-30	5544	-30	299	5prime_fragment	FALSE	canonical	3	5201	junction_1	1379.52238111602	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATACCCCAAGGAAAGAAAA	813	False	NA	-28	True	NA	NA	NA	8944374	8950299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267
transcript_68052.nic	chr19	+	1140	7	NIC	ENSMUSG00000069833.14	novel	989	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	26.9222130508537	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTCTGTGATCACC	NA	False	NA	13	True	AATAAA	-14	NA	8966640	9054278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9022988_9023081_9053939
transcript_68054.known	chr19	+	830	6	FSM	ENSMUSG00000069833.14	ENSMUST00000092955.11	830	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	17.6703140888893	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGAGGTGGCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	8966658	9054078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9053939
transcript_68056.known	chr19	+	18100	5	FSM	ENSMUSG00000069833.14	ENSMUST00000092956.4	18100	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	26.3853652618265	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATCGTGCTCTTGTATTC	NA	False	NA	6	True	AATAAA	-19	NA	8966647	8996560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_8979062
transcript_68059.nic	chr19	+	303	2	ISM	ENSMUSG00000069833.14	ENSMUST00000092956.4	18100	5	-130	19508	-130	-2598	5prime_fragment	FALSE	canonical	3	61	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAGAGAGACCGATACA	NA	False	NA	NA	False	NA	NA	NA	8966517	8977052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_8966794_8977025
transcript_68061.known	chr19	-	4195	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGCTCCTTGTCACAG	NA	False	NA	NA	False	NA	NA	NA	9113000	9087231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
transcript_68064.known	chr19	+	580	1	FSM	ENSMUSG00000117804.2	ENSMUST00000236432.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAAAGAAAATGACTGAAT	NA	False	NA	NA	False	NA	NA	NA	9193744	9194324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_9193700_9194300
transcript_68067.nic	chr19	-	3131	19	NIC	ENSMUSG00000024660.10	novel	3236	18	NA	NA	8	-63	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	145.134516148908	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTGAATGACTTTTAGT	NA	False	NA	-29	True	AATAAA	-15	NA	9876907	9849768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9860555_9860568_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
transcript_68070.known	chr19	-	3236	18	FSM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_14	47.6890156590894	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCAGCAGTATGTCTTG	NA	False	NA	-3	True	NA	NA	NA	9876915	9849659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
transcript_68075.known	chr19	-	3449	17	FSM	ENSMUSG00000024660.10	ENSMUST00000238129.2	3449	17	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_13	49.1273854382665	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACTAGAGGCTTCATTG	NA	False	NA	-31	True	AATAAA	-33	NA	9876825	9849687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
transcript_68106.nic	chr19	-	1894	12	ISM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	14	5897	14	-432	5prime_fragment	FALSE	canonical	3	363	junction_8	34.4853544192529	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAGGAGGAAAAGAAGAAG	NA	False	NA	-4	True	NA	NA	NA	9876901	9855556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
transcript_68115.known	chr19	+	582	3	FSM	ENSMUSG00000118100.2	ENSMUST00000235986.2	582	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	6	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTCTGCCTGCATGCC	NA	False	NA	NA	False	NA	NA	NA	9877053	9879921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_9877385_9878231_9878442_9879880
transcript_68117.known	chr19	+	929	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	4385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTGTGATTGAGGAT	4869	False	NA	23	True	AATAAA	-21	NA	9960009	9962462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
transcript_68119.known	chr19	+	592	3	FSM	ENSMUSG00000024661.8	ENSMUST00000237465.2	592	3	0	0	0	0	multi-exon	FALSE	canonical	3	5325	junction_2	249.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGACCAGTAACTTTGTCC	4946	False	NA	NA	False	NA	NA	NA	9960086	9962107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_9960348_9961544_9961692_9961923
transcript_68122.known	chr19	+	5293	11	FSM	ENSMUSG00000024663.21	ENSMUST00000238672.2	5293	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	17.7045191970864	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATTAGGGATTTTTTTT	3967	False	NA	NA	False	NA	NA	NA	9995556	10015741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10006837_10006985_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
transcript_68123.known	chr19	+	5146	10	FSM	ENSMUSG00000024663.21	ENSMUST00000113161.10	5146	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	9.36897954837013	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATTAGGGATTTTTTTT	3967	False	NA	NA	False	NA	NA	NA	9995556	10015741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
transcript_68124.known	chr19	+	2004	9	FSM	ENSMUSG00000024663.21	ENSMUST00000117641.8	2004	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	8.51377560192891	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCTAGGCGGCAGTGGC	3968	False	NA	2	True	AATAAA	-17	NA	9995557	10012819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
transcript_6813.known	chr1	-	2844	17	FSM	ENSMUSG00000039630.11	ENSMUST00000161769.8	2844	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2477.87245481759	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCGATATGGCTAAGACC	NA	False	NA	NA	False	ATTAAA	-15	NA	178165293	178150638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_178150761_178151184_178151279_178151530_178151582_178152807_178152879_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
transcript_68131.known	chr19	-	3150	12	FSM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	0	0	0	0	multi-exon	TRUE	canonical	3	359	junction_1	25.8738196920081	519	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCTGTAGTTCAGCAAG	9871	False	NA	-4	True	AATAAA	-25	NA	10079110	10040128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
transcript_68139.known	chr19	+	3460	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	0	0	0	0	multi-exon	TRUE	canonical	3	652	junction_7	60.0436480355873	392	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	18	True	AATAAA	-19	NA	10160251	10174238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
transcript_68146.known	chr19	+	606	4	FSM	ENSMUSG00000036372.15	ENSMUST00000040372.14	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	2797	junction_1	495.826806679734	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	3977	False	NA	33	True	AATAAA	-22	NA	10181377	10185188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10181629_10183787_10183898_10184527_10184665_10185080
transcript_68148.known	chr19	+	447	4	FSM	ENSMUSG00000036372.15	ENSMUST00000166412.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	1710.34778789448	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	245	False	NA	33	True	AATAAA	-22	NA	10183396	10185188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10183489_10183787_10183898_10184527_10184665_10185080
transcript_68151.known	chr19	+	1026	3	FSM	ENSMUSG00000036372.15	ENSMUST00000127878.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	2797	junction_1	181	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4181	False	NA	27	True	AATAAA	-16	NA	10181581	10185182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10181629_10183787_10184665_10185080
transcript_68153.known	chr19	-	2100	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2155	False	NA	NA	False	AATAAA	-14	NA	10181307	10176501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10178462_10181167
transcript_68154.known	chr19	-	2373	3	FSM	ENSMUSG00000024742.16	ENSMUST00000156291.2	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	414.5	1312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCTGAATGTTTGAAAA	1929	False	NA	NA	False	AATAAA	-20	NA	10181533	10176495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10178462_10181051_10181384_10181458
transcript_68155.known	chr19	-	2152	2	FSM	ENSMUSG00000024742.16	ENSMUST00000142241.2	2152	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACCAGAATGTGTCTGAA	2204	False	NA	NA	False	AATAAA	-10	NA	10181258	10176505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10178462_10181062
transcript_68163.known	chr19	+	3315	11	FSM	ENSMUSG00000034820.5	ENSMUST00000236206.2	3315	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	86.2092802429066	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAATGTAAAGTGAC	NA	False	NA	NA	False	TTTAAA	-5	NA	10502629	10524766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10509494_10509561_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
transcript_68171.known	chr19	+	3500	10	FSM	ENSMUSG00000034820.5	ENSMUST00000038379.5	3500	10	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	38.5749230894635	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTTATACTGCATTGT	NA	False	NA	16	True	AATAAA	-16	NA	10502629	10525017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
transcript_68177.nic	chr19	-	907	6	NIC	ENSMUSG00000024667.13	novel	876	6	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	28.4717403753266	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACAGGGCTGGTTGATT	NA	False	NA	-10	True	AATAAA	-10	NA	10533137	10527831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
transcript_68178.known	chr19	-	876	6	FSM	ENSMUSG00000024667.13	ENSMUST00000236561.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	26.7686383665662	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACAGGGCTGGTTGATT	NA	False	NA	-10	True	AATAAA	-10	NA	10533120	10527831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
transcript_68179.nnic	chr19	-	2056	5	NNC	ENSMUSG00000024668.9	novel	2025	5	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	100.446503174575	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502573	10479004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498401_10502422
transcript_68180.known	chr19	-	2025	5	FSM	ENSMUSG00000024668.9	ENSMUST00000235853.2	2025	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	101.25802437338	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502520	10479004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498423_10502422
transcript_68184.known	chr19	-	999	5	FSM	ENSMUSG00000024667.13	ENSMUST00000059582.9	999	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	20.6079474960511	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTTTTAATAAAAGTAT	NA	False	NA	-34	True	NA	NA	NA	10533115	10527855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
transcript_68185.known	chr19	-	927	5	FSM	ENSMUSG00000024667.13	ENSMUST00000154383.2	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	15.1224171348366	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACCCATTTAGTAGTTT	NA	False	NA	-92	True	NA	NA	NA	10533115	10527913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
transcript_68186.known	chr19	-	2981	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCTCCCCAGGACCCAC	NA	False	NA	NA	False	AATAAA	-16	NA	10502479	10477897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
transcript_68187.known	chr19	-	997	4	FSM	ENSMUSG00000024668.9	ENSMUST00000235243.2	997	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	80.2426874480715	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCATTGAGGCAAACTTTC	NA	False	NA	0	True	NA	NA	NA	10502456	10479707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10480494_10494343_10494454_10494683_10494751_10502422
transcript_68193.nic	chr19	+	4302	28	NIC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	145	junction_5	848.081981892655	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTATTGGTCTCTGC	563	False	NA	56	True	AATAAA	-16	NA	10582883	10607183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10587192_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
transcript_68204.known	chr19	+	4459	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	0	0	0	0	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	3217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTATTGGTCTCTGC	370	False	NA	56	True	AATAAA	-16	NA	10582690	10607183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
transcript_68247.known	chr19	-	2758	18	FSM	ENSMUSG00000034371.10	ENSMUST00000237788.2	2758	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	19.3346060114857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATTTTTTTTCCTTTTTT	9741	False	NA	NA	False	AATAAA	-18	NA	10582796	10565154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10566211_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582772
transcript_68250.known	chr19	-	2437	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236950.2	2437	18	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_17	12.9229818620786	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTTGTCCCTGTTTACA	9789	False	NA	-23	True	AATAAA	-17	NA	10582748	10569560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582582
transcript_68251.known	chr19	-	2516	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236607.2	2516	18	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_17	13.858404068355	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACTTTGTCCCTGTTTAC	9519	False	NA	-24	True	AATAAA	-16	NA	10583018	10569561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582772
transcript_68262.known	chr19	+	2634	9	FSM	ENSMUSG00000034445.9	ENSMUST00000237581.2	2634	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	28.8693176226942	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCAGAGGTCTCTTTT	NA	False	NA	7	True	ATTAAA	-10	NA	10554854	10567186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10554928_10555097_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_68264.known	chr19	+	3130	8	FSM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	19.4768308196049	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCTCTTTTGTTCAGA	NA	False	NA	14	True	ATTAAA	-17	NA	10554535	10567193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_68267.known	chr19	+	2661	8	FSM	ENSMUSG00000034445.9	ENSMUST00000235271.2	2661	8	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	32.1856857523176	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCTCTTTTGTTCAGA	NA	False	NA	14	True	ATTAAA	-17	NA	10554814	10567193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10555258_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_6827.known	chr1	-	7640	14	FSM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	0	0	0	0	multi-exon	FALSE	canonical	2	3444	junction_4	860.763298254115	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATGTATTGTAGTACC	NA	False	NA	NA	False	ATTAAA	-14	NA	178165362	178151907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
transcript_68273.known	chr19	+	1474	7	FSM	ENSMUSG00000034445.9	ENSMUST00000168445.2	1474	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	29.6516816086748	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGGCAGGGGCTCCTGGG	NA	False	NA	NA	False	NA	NA	NA	10554817	10565912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_68274.known	chr19	+	2149	7	FSM	ENSMUSG00000034445.9	ENSMUST00000237641.2	2149	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	40.1939741199543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAGGTCTCTTTTGTTCA	NA	False	NA	12	True	ATTAAA	-15	NA	10554817	10567191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10566492
transcript_68282.known	chr19	-	1260	5	FSM	ENSMUSG00000024666.7	ENSMUST00000235990.2	1260	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	58.8175143983491	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1765	False	NA	-6	True	AATAAA	-13	NA	10554471	10547843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552300_10552603_10552876_10554447
transcript_68283.known	chr19	-	1529	5	FSM	ENSMUSG00000024666.7	ENSMUST00000236099.2	1529	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	65.3543227338483	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1785	False	NA	-4	True	AATAAA	-15	NA	10554451	10547841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554233
transcript_68285.known	chr19	-	1590	5	FSM	ENSMUSG00000024666.7	ENSMUST00000025568.3	1590	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_4	27.5896266738062	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1510	False	NA	-4	True	AATAAA	-15	NA	10554726	10547841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
transcript_68292.known	chr19	-	1593	4	FSM	ENSMUSG00000024666.7	ENSMUST00000236185.2	1593	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	28.0158685192676	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1765	False	NA	-6	True	AATAAA	-13	NA	10554471	10547843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10548969_10552200_10552373_10552603_10552876_10554447
transcript_68296.known	chr19	-	2253	17	FSM	ENSMUSG00000034371.10	ENSMUST00000037678.7	2253	17	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	8.36286434183886	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGACTTTGTCCCTGTTT	NA	False	NA	-26	True	AATAAA	-14	NA	10581622	10569563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531
transcript_68299.known	chr19	+	2686	5	FSM	ENSMUSG00000048832.10	ENSMUST00000087951.7	2686	5	0	0	0	0	multi-exon	TRUE	canonical	3	85	junction_1	17.2699160391705	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGTCCATGATGAG	NA	False	NA	16	True	AATAAA	-19	NA	10666114	10691990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10666344_10683573_10683673_10687633_10687806_10688634_10688718_10689887
transcript_68300.known	chr19	-	2173	9	FSM	ENSMUSG00000024670.18	ENSMUST00000025572.8	2173	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	1.11102430216445	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTAGGCGTGTCTTGA	8156	False	NA	NA	False	ATTAAA	-13	NA	10776108	10766709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10767608_10767932_10768035_10768279_10768535_10768745_10768818_10770191_10770309_10771505_10771602_10771927_10772069_10773689_10773753_10775679
transcript_68304.known	chr19	-	3657	11	FSM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_8	9.57131129992124	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTGACACTCTCTGTC	NA	False	NA	1	True	AATAAA	-27	NA	10847304	10835185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
transcript_68305.known	chr19	-	3895	10	FSM	ENSMUSG00000024736.16	ENSMUST00000120524.2	3895	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	10.088497300281	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAGCTGGTACTGCTGTG	NA	False	NA	-11	True	AATAAA	-15	NA	10847142	10835197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
transcript_68307.known	chr19	-	839	4	FSM	ENSMUSG00000034659.15	ENSMUST00000133303.8	839	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	71.4749373323731	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTGAGAGGGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	10857734	10849213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10849514_10849950_10850054_10851605_10851851_10857543
transcript_68308.known	chr19	-	2188	4	FSM	ENSMUSG00000034659.15	ENSMUST00000038128.15	2188	4	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_2	8.28653526310404	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGCTGACAAACTCTC	NA	False	NA	-3	True	AATAAA	-17	NA	10859365	10848023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10849514_10849950_10850054_10851605_10851851_10859015
transcript_68309.known	chr19	-	1096	3	FSM	ENSMUSG00000034659.15	ENSMUST00000147699.2	1096	3	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGCTAGATTGCTGACT	NA	False	NA	NA	False	NA	NA	NA	10859365	10849552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10850054_10851605_10851851_10859015
transcript_68310.known	chr19	+	6035	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTGTGGTATGTGCCC	NA	False	NA	NA	False	AATAAA	-22	NA	10872777	10886923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
transcript_68311.known	chr19	+	2134	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872594	10882896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
transcript_68326.nnic	chr19	-	1648	5	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	-84	-1319	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.6799895361	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926714	10920163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641_10926169_10926288
transcript_68328.known	chr19	-	3003	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCACCTTGCTCCGGGAG	NA	False	NA	NA	False	ATTAAA	-22	NA	10926630	10918844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
transcript_68331.known	chr19	-	3745	1	FSM	ENSMUSG00000024732.8	ENSMUST00000189018.2	3745	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAGAAAAAAGAGCAG	NA	False	NA	NA	False	NA	NA	NA	10926615	10922870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_10922900_10926600
transcript_68333.known	chr19	+	1162	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTATCTCCGGACCT	161	False	NA	NA	False	NA	NA	NA	11747754	11752324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
transcript_68338.known	chr19	+	2981	3	FSM	ENSMUSG00000024683.7	ENSMUST00000237728.2	2981	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	27	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGGGTACAACTTCTCT	182	False	NA	25	True	ATTAAA	-13	NA	11747775	11752157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_11747889_11748165_11750388_11751511
transcript_68341.nnic	chr19	-	2744	12	NIC	ENSMUSG00000041488.17	novel	3068	12	NA	NA	-69	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	185.459046291195	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGGGTACTAGTTGTA	7068	False	NA	-19	True	AATAAA	-19	NA	11796375	11752481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_11753953_11754451_11754535_11758930_11759045_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
transcript_68346.nnic	chr19	-	2630	11	NIC	ENSMUSG00000041488.17	novel	3068	12	NA	NA	-69	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	192.742937613807	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGGGTACTAGTTGTA	7068	False	NA	-19	True	AATAAA	-19	NA	11796375	11752481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_11753953_11754451_11754535_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
transcript_68348.known	chr19	-	2810	11	FSM	ENSMUSG00000041488.17	ENSMUST00000069285.6	2810	11	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_5	58.7316779940774	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGGGCCATCTCTCTG	7137	False	NA	-8	True	AATAAA	-25	NA	11796306	11754848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_11756538_11758930_11759045_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
transcript_68359.known	chr19	+	3158	20	FSM	ENSMUSG00000046139.9	ENSMUST00000238190.2	3158	20	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	81.8323060642279	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTTGTTAGTTGGCTG	NA	False	NA	NA	False	ATTAAA	-1	NA	11889806	11921367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899284_11899359_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
transcript_68365.known	chr19	+	4216	19	FSM	ENSMUSG00000046139.9	ENSMUST00000061618.9	4216	19	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	27.8366043764299	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGATAGATGTCCATCTCT	NA	False	NA	21	True	AATAAA	-11	NA	11889762	11922455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
transcript_68381.known	chr19	-	5226	9	FSM	ENSMUSG00000039982.9	ENSMUST00000045521.9	5226	9	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_1	4.63680924774785	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCACAAATTGTCGTTACT	8232	False	NA	NA	False	AATAAA	-13	NA	12478818	12443701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_12447074_12450593_12450684_12455489_12455652_12459437_12459591_12460409_12460472_12462627_12462790_12463792_12463855_12469199_12469915_12478370
transcript_68382.nnic	chr19	-	4837	9	NNC	ENSMUSG00000039982.9	novel	5226	9	NA	NA	-708	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	5.29002599237471	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCACAAATTGTCGTTACT	7524	False	NA	NA	False	AATAAA	-13	NA	12479526	12443701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_12447074_12450593_12450684_12455489_12455652_12459437_12459591_12460409_12460472_12462627_12462790_12463792_12463855_12469199_12469915_12479467
transcript_68385.known	chr19	+	3267	4	FSM	ENSMUSG00000024691.14	ENSMUST00000025595.5	3267	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	5.90668171555645	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTTTTCTTTAGTTATT	NA	False	NA	4	True	AATAAA	-13	NA	12550886	12567126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_12550945_12554453_12554535_12561286_12561487_12564198
transcript_68389.nic	chr19	+	363	3	ISM	ENSMUSG00000024691.14	ENSMUST00000025595.5	3267	4	-44	5660	-44	139	5prime_fragment	FALSE	canonical	3	71	junction_1	6.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGACTATTTCTCTCAG	NA	False	NA	NA	False	AATAAA	-5	NA	12550842	12561466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_12550945_12554453_12554535_12561286
transcript_68390.known	chr19	-	5531	11	FSM	ENSMUSG00000024695.17	ENSMUST00000038627.9	5531	11	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_5	14.0003571383019	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCTTGTTTCCTTTTAA	NA	False	NA	-4	True	AATAAA	-18	NA	12773490	12744383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_12747914_12748366_12748467_12752183_12752299_12753358_12753438_12753775_12753827_12754223_12754359_12755305_12755411_12755987_12756025_12756256_12756464_12767623_12767653_12772347
transcript_68392.nic	chr19	-	972	6	ISM	ENSMUSG00000024695.17	ENSMUST00000038627.9	5531	11	611	9913	611	-5422	5prime_fragment	FALSE	canonical	3	121	junction_5	7.54718490564528	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGTGGAAGTAGAAGTA	NA	False	NA	NA	False	NA	NA	NA	12772879	12754296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_12754359_12755305_12755411_12755987_12756025_12756256_12756464_12767623_12767653_12772347
transcript_68395.nnic	chr19	-	4589	21	NNC	ENSMUSG00000024642.18	novel	4545	20	NA	NA	-180	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	44.4108939338086	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGATTATTTTCTAATT	NA	False	NA	-16	True	ATTAAA	-15	NA	14575595	14425513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_14427206_14429006_14429084_14429427_14429579_14429783_14429932_14430942_14431191_14432104_14432355_14441672_14441750_14442107_14442302_14442649_14442783_14443912_14444066_14444543_14444598_14445515_14445636_14493722_14493740_14495135_14495338_14522151_14522227_14541752_14541816_14571747_14571793_14572953_14573018_14574120_14574219_14574731_14574873_14575008
transcript_68399.nnic	chr19	-	3993	20	NNC	ENSMUSG00000024642.18	novel	4545	20	NA	NA	831	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_19	43.7527680169069	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGATTATTTTCTAATT	NA	False	NA	-16	True	ATTAAA	-15	NA	14574584	14425513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_14427206_14429006_14429084_14429427_14429579_14429783_14429932_14430942_14431191_14432104_14432355_14441672_14441750_14442107_14442302_14442649_14442783_14443912_14444066_14444543_14444598_14445515_14445636_14493722_14493740_14495135_14495338_14522151_14522227_14541752_14541816_14571747_14571793_14572953_14573018_14574120_14574219_14574452
transcript_68411.known	chr19	-	2617	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	0	0	0	0	multi-exon	TRUE	canonical	3	2829	junction_2	225.154079188008	3313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAAAGGTGGAGTGGGTG	NA	False	NA	NA	False	TTTAAA	-44	NA	15902423	15882041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
transcript_68425.known	chr19	-	2291	9	FSM	ENSMUSG00000024640.10	ENSMUST00000162053.8	2291	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	1098.17038181696	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATTGCCTGTGAATTAT	NA	False	NA	-14	True	ATTAAA	-20	NA	15901986	15882490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15901667
transcript_68431.known	chr19	-	2548	15	FSM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	15.9123876785558	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	175	False	NA	NA	False	AATAAA	-16	NA	15962353	15933137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
transcript_68432.nnic	chr19	-	2414	14	NIC	ENSMUSG00000041491.9	novel	2667	17	NA	NA	-34	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	44.4826939288933	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATATTGAGTGATAAAATA	141	False	NA	NA	False	AATAAA	-17	NA	15962387	15933136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_15933768_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
transcript_68433.known	chr19	-	2465	14	FSM	ENSMUSG00000041491.9	ENSMUST00000236749.2	2465	14	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	15.7062532302438	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAAAACAGAATAGT	471	False	NA	NA	False	ATTAAA	-31	NA	15962057	15933344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
transcript_68443.known	chr19	+	5644	7	FSM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	6.07590871118606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGCTGCTCTTCTTAAAA	NA	False	NA	20	True	AATAAA	-24	NA	16110194	16364827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_16110826_16196951_16197137_16293380_16293536_16309440_16309570_16312344_16312475_16355520_16355675_16360567
transcript_68445.known	chr19	+	862	3	FSM	ENSMUSG00000024639.6	ENSMUST00000170229.2	862	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCTTAGACTCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	16110659	16293891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_16110826_16196951_16197137_16293380
transcript_68446.known	chr19	-	561	1	FSM	ENSMUSG00000075268.3	ENSMUST00000099988.3	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGCTGCACAGGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	16244985	16244424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_16244400_16245000
transcript_68447.known	chr19	+	3290	7	FSM	ENSMUSG00000024697.5	ENSMUST00000025602.4	3290	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.3392781412697	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCTTCTTTGATTCCT	NA	False	NA	NA	False	AAGAAA	-19	NA	16413125	16588184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_16414182_16511076_16511262_16576303_16576459_16580627_16580757_16582326_16582457_16585346_16585501_16586703
transcript_68450.nic	chr19	-	2808	25	ISM	ENSMUSG00000046230.12	ENSMUST00000224149.2	10037	74	-163	94087	-52	11488	5prime_fragment	FALSE	canonical	3	25	junction_11	6.24666577730339	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACAAAAGAAAGATTGTGT	NA	False	NA	NA	False	GATAAA	-19	NA	16758349	16688213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_16688306_16692412_16692492_16697692_16697832_16699758_16699877_16701003_16701137_16702920_16703058_16712078_16712194_16712278_16712466_16718126_16718270_16718540_16718636_16719802_16719933_16720359_16720423_16722149_16722322_16723024_16723132_16723314_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
transcript_68452.nic	chr19	-	576	5	ISM	ENSMUSG00000046230.12	ENSMUST00000225764.2	2591	6	-52	7292	-52	-7292	5prime_fragment	FALSE	canonical	3	36	junction_2	3.49106001094224	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACAGAAAGTATTTGA	NA	False	NA	NA	False	AATAGA	-5	NA	16758349	16736975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
transcript_68453.known	chr19	-	10838	72	FSM	ENSMUSG00000046230.12	ENSMUST00000068156.8	10838	72	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_58	9.97459578127363	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGGTCAATGGATATTT	NA	False	NA	-27	True	CATAAA	-16	NA	16758291	16593049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_16594280_16596457_16596533_16596741_16596866_16597987_16598074_16613132_16613245_16617353_16617478_16617565_16617612_16617900_16618065_16618147_16618224_16618921_16619036_16621112_16621195_16623212_16623359_16624956_16625071_16628782_16628889_16630050_16630121_16631204_16631287_16631704_16631852_16632572_16632724_16633222_16633456_16635967_16636098_16637811_16637946_16638360_16638490_16641115_16641263_16641371_16641477_16641872_16642269_16643517_16643801_16645961_16646066_16653409_16653571_16655217_16655474_16655608_16655768_16657373_16657476_16659233_16659591_16660147_16660241_16662641_16662875_16663792_16664008_16664447_16664618_16665310_16665436_16669110_16669262_16672822_16672971_16676171_16676477_16678484_16678653_16680867_16680972_16681051_16681169_16681895_16682050_16683238_16683299_16684690_16684771_16687634_16687792_16688150_16688306_16692412_16692492_16697692_16697832_16699758_16699877_16701003_16701137_16702920_16703058_16712078_16712194_16712278_16712466_16718126_16718270_16718540_16718636_16719802_16719933_16720359_16720423_16722149_16722322_16723024_16723132_16723314_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
transcript_68454.known	chr19	-	2591	6	FSM	ENSMUSG00000046230.12	ENSMUST00000225764.2	2591	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	5.97996655509042	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAAAAATAGAGGAT	NA	False	NA	NA	False	NA	NA	NA	16758297	16729683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
transcript_68456.known	chr19	+	1803	9	FSM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	14.3352711868315	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAACACTCAGATGCA	NA	False	NA	NA	False	NA	NA	NA	17114129	17198948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17198147
transcript_68460.nic	chr19	+	1223	8	ISM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	-58	13092	-58	-1639	5prime_fragment	FALSE	canonical	3	57	junction_3	14.2427926635594	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTATTCTTTCAGATCCT	NA	False	NA	14	True	AATAAA	-26	NA	17114071	17185856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594
transcript_68465.known	chr19	+	946	4	FSM	ENSMUSG00000039126.11	ENSMUST00000224602.2	946	4	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	18.6964048831735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGATGAGCAGATATTGC	NA	False	NA	NA	False	NA	NA	NA	17114138	17171167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619
transcript_68471.known	chr19	-	4606	3	FSM	ENSMUSG00000038843.19	ENSMUST00000174236.8	4606	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	7	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGTCTGCACACATTA	8034	False	NA	2	True	AATAAA	-21	NA	17334031	17303504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_17307853_17310473_17310621_17333920
transcript_68475.known	chr19	+	2482	4	FSM	ENSMUSG00000024712.10	ENSMUST00000025617.4	2482	4	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	47.0744091837593	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAATCCTGTATCTGTTT	1324	False	NA	19	True	AATAAA	-34	NA	17371406	17378713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_17371757_17372561_17372714_17375941_17376045_17376836
transcript_68478.known	chr19	-	5768	21	FSM	ENSMUSG00000024713.17	ENSMUST00000050715.10	5768	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.83303027798234	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTTGATCTCTTCATA	NA	False	NA	NA	False	ATTAAA	-16	NA	17814996	17535537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_17538194_17541145_17541262_17542073_17542204_17542631_17542730_17545632_17545718_17549787_17549982_17553169_17553273_17558499_17558644_17563373_17563511_17571903_17572093_17573024_17573143_17595014_17595119_17619856_17619958_17632051_17632265_17652784_17652958_17655832_17655922_17689278_17689356_17692121_17692266_17729426_17729541_17770992_17771098_17814318
transcript_68482.known	chr19	-	2726	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	0	0	0	0	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTAATTTTGTGTCACTG	NA	False	NA	NA	False	TTTAAA	-4	NA	18609153	18556691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
transcript_68487.known	chr19	-	2816	9	FSM	ENSMUSG00000024725.14	ENSMUST00000156908.8	2816	9	0	0	0	0	multi-exon	FALSE	canonical	3	1071	junction_2	24.446050294475	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTGTAATAGTTTTTTT	NA	False	NA	-2	True	AATAAA	-34	NA	18609104	18558355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_18558693_18562005_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
transcript_68494.known	chr19	+	1940	9	FSM	ENSMUSG00000037847.15	ENSMUST00000237347.2	1940	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	10.6880482315528	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCTCAATTCATACAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	18609313	18629792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
transcript_68501.known	chr19	+	1341	2	FSM	ENSMUSG00000037847.15	ENSMUST00000162446.2	1341	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18609325	18614663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_18609446_18613442
transcript_68506.known	chr19	+	1714	8	FSM	ENSMUSG00000024726.11	ENSMUST00000235736.2	1714	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	444.181981459245	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGGTGCCTTCTTATTC	NA	False	NA	NA	False	AATAAA	-45	NA	18648242	18681586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_18648856_18655051_18655248_18656467_18656632_18667593_18667735_18668780_18668960_18671012_18671127_18680724_18680829_18681383
transcript_68508.known	chr19	+	1631	2	FSM	ENSMUSG00000047044.8	ENSMUST00000055792.8	1631	2	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	0	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTATGTATCAGTGACTAA	9357	False	NA	26	True	AATAAA	-19	NA	18690599	18695792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_18691024_18694585
transcript_68509.known	chr19	-	1674	13	FSM	ENSMUSG00000024659.16	ENSMUST00000025561.8	1674	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	3.1446603773522	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCATTGTCTCTC	7005	False	NA	2	True	AATAAA	-23	NA	20368308	20350791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012_20357070_20357703_20357784_20359413_20359505_20360225_20360340_20361120_20361216_20361838_20361948_20362056_20362137_20367975
transcript_68511.nnic	chr19	-	1328	4	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138243	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	88.3377357393518	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	21768583	21574675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_21575699_21576118_21576233_21581652_21581681_21768420
transcript_68512.known	chr19	-	1614	4	FSM	ENSMUSG00000035171.10	ENSMUST00000038830.10	1614	4	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	6.94422221866655	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	453	False	NA	NA	False	AATAAA	-21	NA	21630340	21574675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_21575699_21576118_21576233_21596472_21596580_21629970
transcript_68514.known	chr19	-	962	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179768.8	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_2	1.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAGACGCTCCAGAAAA	512	False	NA	NA	False	AATAAA	-1	NA	21630281	21575688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_21576233_21596472_21596580_21629970
transcript_68516.known	chr19	-	629	2	FSM	ENSMUSG00000035171.10	ENSMUST00000178523.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGCAATCCTCCCTGAA	512	False	NA	NA	False	NA	NA	NA	21630281	21575914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_21576233_21629970
transcript_68518.known	chr19	+	2259	4	FSM	ENSMUSG00000047368.5	ENSMUST00000052556.5	2259	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	15.3260852434302	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGGCTGTGCTTGTGTGC	NA	False	NA	12	True	AGTAAA	-15	NA	21630888	21663001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_21630958_21655716_21656187_21658231_21658412_21661461
transcript_68521.known	chr19	+	6667	25	FSM	ENSMUSG00000024754.14	ENSMUST00000096194.9	6667	25	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	23.4529301059709	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTGTATTTGTGAATC	NA	False	NA	20	True	AATAAA	-26	NA	21755705	21835691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_21756151_21757534_21757617_21770001_21770345_21774690_21774832_21775230_21775793_21779225_21779396_21784722_21784912_21786632_21786803_21789130_21789341_21789574_21789781_21789914_21789985_21792794_21792924_21795286_21795376_21801151_21801284_21802453_21802490_21803403_21803560_21807163_21807342_21809390_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
transcript_68522.known	chr19	+	6602	24	FSM	ENSMUSG00000024754.14	ENSMUST00000025663.8	6602	24	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	16.2129029807244	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCTCAGATTCTAGCTTT	NA	False	NA	53	True	NA	NA	NA	21755721	21835724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_21756151_21770001_21770345_21774690_21774832_21775230_21775793_21779225_21779396_21784722_21784912_21786632_21786803_21789130_21789341_21789574_21789781_21789914_21789985_21792794_21792924_21795286_21795376_21801151_21801284_21802453_21802490_21803403_21803560_21807163_21807342_21809390_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
transcript_68534.known	chr19	-	816	2	FSM	ENSMUSG00000097930.3	ENSMUST00000236056.2	816	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAGAGAGAGC	4890	False	NA	NA	False	AAAAAG	-2	NA	23053288	22955593	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_22956242_23053120
transcript_68535.known	chr19	+	414	2	FSM	ENSMUSG00000044387.6	ENSMUST00000142712.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGAAACATCGCTAG	NA	False	NA	NA	False	NA	NA	NA	23112263	23113081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_23112319_23112722
transcript_68537.known	chr19	+	4486	2	FSM	ENSMUSG00000033863.3	ENSMUST00000036884.3	4486	2	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCATTACGTTCTTCCA	NA	False	NA	NA	False	AATAAA	-29	NA	23118589	23145498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_23119624_23142046
transcript_68539.known	chr19	-	5683	25	FSM	ENSMUSG00000024943.10	ENSMUST00000087556.7	5683	25	0	0	0	0	multi-exon	FALSE	canonical	2	93	junction_7	95.2415696910872	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTATTTAAGATGAGAGTA	NA	False	NA	-11	True	AATAAA	-23	NA	23251182	23183814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192008_23192105_23192518_23192564_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
transcript_68540.known	chr19	-	3448	24	FSM	ENSMUSG00000024943.10	ENSMUST00000223934.2	3448	24	0	0	0	0	multi-exon	FALSE	canonical	2	185	junction_5	71.1727842464471	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATTTTTGGAAACCT	NA	False	NA	4	True	AATAAA	-29	NA	23251261	23186086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
transcript_68550.nic	chr19	-	836	6	ISM	ENSMUSG00000024943.10	ENSMUST00000223934.2	3448	24	-16	51002	-16	3853	5prime_fragment	FALSE	canonical	3	317	junction_3	34.4290574950869	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGATGTGGAAAGATTCTA	NA	False	NA	NA	False	AATGAA	-10	NA	23251277	23237088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
transcript_68553.nnic	chr19	+	863	2	Genic_Genomic	ENSMUSG00000051255.7	novel	633	1	NA	NA	-27	272	multi-exon	FALSE	canonical	3	409	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCGGATCAGAATGCTCAC	NA	False	NA	NA	False	NA	NA	NA	23653184	23654116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr19_+_23653644_23653712
transcript_68554.known	chr19	+	633	1	FSM	ENSMUSG00000051255.7	ENSMUST00000056396.7	633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAAGTTCGTGCTTTCTG	NA	False	NA	NA	False	AAAAAG	-26	NA	23653211	23653844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_23653200_23653800
transcript_68556.known	chr19	+	12574	7	FSM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	3.54338193757822	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTAAGATTTATTCATTT	NA	False	NA	19	True	AATAAA	-26	NA	23664792	23709032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_23664910_23671684_23671855_23680441_23680509_23683070_23683176_23686117_23686332_23695176_23695467_23697421
transcript_68562.known	chr19	-	4668	23	FSM	ENSMUSG00000024812.12	ENSMUST00000233027.2	4668	23	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_22	83.9099280958925	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAAAATGTGTGTATGA	NA	False	NA	NA	False	ATTAAA	-16	NA	24151553	24071868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24151318
transcript_68563.known	chr19	-	4591	23	FSM	ENSMUSG00000024812.12	ENSMUST00000099558.5	4591	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_22	84.2977309185516	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTTTTAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	24202390	24071886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24202214
transcript_68571.known	chr19	-	4728	24	FSM	ENSMUSG00000024812.12	ENSMUST00000232956.2	4728	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	109.045662553534	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAAAATGTGTGTATGA	NA	False	NA	NA	False	ATTAAA	-16	NA	24202394	24071868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_24072949_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24171072_24171194_24202214
transcript_68574.known	chr19	-	1072	5	FSM	ENSMUSG00000059363.11	ENSMUST00000123684.2	1072	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	173.887894920837	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAAGTCTTACA	NA	False	NA	NA	False	NA	NA	NA	24257932	24238864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_24239418_24244665_24244764_24249667_24249832_24254544_24254640_24257770
transcript_68575.known	chr19	-	1114	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATGTCTTACACTGTG	NA	False	NA	NA	False	AAGAAA	-45	NA	24257969	24238816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
transcript_68578.known	chr19	-	2573	15	FSM	ENSMUSG00000024867.15	ENSMUST00000025800.15	2573	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	5.473498303048	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTCATACATTGATTC	NA	False	NA	0	True	AATAAA	-16	NA	24533236	24272157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_24272919_24281395_24281511_24323600_24323746_24327497_24327654_24332481_24332567_24335393_24335443_24335574_24335659_24337303_24337516_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
transcript_68583.known	chr19	+	946	1	FSM	ENSMUSG00000058927.7	ENSMUST00000073080.7	946	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAGTTGATCTGCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	24853049	24853995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_24853000_24854000
transcript_68584.known	chr19	-	1929	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGTGTGATGGTACTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	24938965	24897279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
transcript_68598.nnic	chr19	+	5565	14	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-253	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	13.2338994508254	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25214085	25411860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_25214357_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
transcript_68599.known	chr19	+	5637	14	FSM	ENSMUSG00000032702.17	ENSMUST00000049400.15	5637	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	16.8104644783043	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	6	True	AATAAA	-15	NA	25214338	25411860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_25214682_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
transcript_68619.known	chr19	+	2340	5	FSM	ENSMUSG00000024837.16	ENSMUST00000025755.11	2340	5	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	4.08503365959205	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTGTGTATATTTG	NA	False	NA	12	True	AATAAA	-20	NA	25482981	25581693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_25483566_25487043_25487228_25523182_25523467_25537230_25537376_25580550
transcript_68622.known	chr19	+	1130	4	FSM	ENSMUSG00000024837.16	ENSMUST00000087525.5	1130	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	61.5304802516606	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGTAGGATCCCAGACT	NA	False	NA	NA	False	AAAACA	-7	NA	25483069	25580855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_25483566_25487043_25487228_25537230_25537376_25580550
transcript_68625.nic	chr19	+	2482	3	NIC	ENSMUSG00000042372.6	novel	2391	2	NA	NA	-74	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	6	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGTTGATGTCTTTTCT	NA	False	NA	17	True	AATAAA	-13	NA	25587590	25601285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_25587719_25587937_25588632_25599625
transcript_68626.known	chr19	+	2391	2	FSM	ENSMUSG00000042372.6	ENSMUST00000048935.6	2391	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGTTGATGTCTTTTCT	NA	False	NA	17	True	AATAAA	-13	NA	25587900	25601285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_25588632_25599625
transcript_68627.known	chr19	+	2337	4	FSM	ENSMUSG00000048138.11	ENSMUST00000053068.7	2337	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAGTATTTGTTGAAGGA	NA	False	NA	NA	False	AATAAA	-21	NA	25649774	25656355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_25650123_25650779_25651341_25652914_25653018_25655030
transcript_68628.known	chr19	-	503	3	FSM	ENSMUSG00000118001.2	ENSMUST00000237584.2	503	3	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCACGTGTATGCAGA	NA	False	NA	NA	False	NA	NA	NA	26461850	26460956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_26461343_26461656_26461733_26461809
transcript_68629.known	chr19	+	5921	33	FSM	ENSMUSG00000024921.18	ENSMUST00000025862.15	5921	33	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	7.35245494715881	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCGCCTTTTCTTTTA	NA	False	NA	63	True	AATAAA	-18	NA	26582451	26755721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_26582634_26597083_26597345_26601280_26601411_26608069_26608532_26617787_26618050_26624420_26624548_26626383_26626558_26628948_26629123_26631740_26631912_26641450_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
transcript_68633.nnic	chr19	+	2048	9	NNC	ENSMUSG00000024921.18	novel	876	7	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	7.69740215917033	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGGTGTTGGTACTTT	NA	False	NA	17	True	AATAAA	-18	NA	26693284	26755675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_26693393_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
transcript_68634.known	chr19	+	876	7	FSM	ENSMUSG00000024921.18	ENSMUST00000207226.2	876	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.3107902084129	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAAAATTGCCAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	26693283	26751620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_26693389_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572
transcript_68637.nic	chr19	+	3235	19	NIC	ENSMUSG00000024924.15	novel	7971	19	NA	NA	-202	-93	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	9.07309140559716	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTAACTAATTTTGTACG	NA	False	NA	NA	False	GATAAA	-40	NA	27194217	27227034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_27194349_27194942_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
transcript_68638.nic	chr19	+	3356	19	NIC	ENSMUSG00000024924.15	novel	7971	19	NA	NA	-202	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	9.07309140559716	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCATGGTTTTGATTATT	NA	False	NA	NA	False	ATTAAA	-11	NA	27194217	27227155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_27194349_27194942_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
transcript_68641.known	chr19	+	7971	19	FSM	ENSMUSG00000024924.15	ENSMUST00000167487.8	7971	19	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_15	10.2837820299492	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAGTCTACTTTTTCTAG	NA	False	NA	13	True	AATAAA	-24	NA	27194756	27231631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27223992_27224077_27224409_27224491_27225256_27225427_27226504
transcript_68650.nnic	chr19	+	3077	18	NIC	ENSMUSG00000024924.15	novel	4895	17	NA	NA	-198	-93	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	9.17496216863305	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTAACTAATTTTGTACG	NA	False	NA	NA	False	GATAAA	-40	NA	27194221	27227034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_27194349_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
transcript_68652.known	chr19	+	3855	18	FSM	ENSMUSG00000024924.15	ENSMUST00000172302.8	3855	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	6.92020760934247	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAATCGAGCTAGTATCTT	NA	False	NA	NA	False	NA	NA	NA	27194419	27227262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
transcript_68654.known	chr19	+	3253	18	FSM	ENSMUSG00000024924.15	ENSMUST00000025866.14	3253	18	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	9.60716284106141	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGATTATTCCTCTAAG	NA	False	NA	NA	False	ATTAAA	-19	NA	27194857	27227163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_27195097_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218699_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
transcript_68659.known	chr19	+	3260	17	FSM	ENSMUSG00000024924.15	ENSMUST00000047645.13	3260	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	10.0013670940527	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCTAAAAAAAAAATTAAACC	NA	False	NA	NA	False	NA	NA	NA	27194756	27227127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_27195097_27207595_27207716_27212189_27212313_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
transcript_68675.known	chr19	-	2179	18	FSM	ENSMUSG00000041360.9	ENSMUST00000235859.2	2179	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	491.227662003022	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCTCTGTGGTTGAATG	NA	False	NA	67	True	NA	NA	NA	27407220	27367376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376501_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397518_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
transcript_68692.known	chr19	-	1721	11	FSM	ENSMUSG00000041360.9	ENSMUST00000235297.2	1721	11	0	0	0	0	multi-exon	FALSE	canonical	3	1425	junction_3	83.6366546437625	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAATGTGGTTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	27404509	27392740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436
transcript_68695.known	chr19	+	3800	12	FSM	ENSMUSG00000024935.12	ENSMUST00000025875.5	3800	12	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	5.75246982529323	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCTCTCATCTGT	NA	False	NA	17	True	AATAAA	-27	NA	28812473	28891360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_28812733_28856412_28856554_28870234_28870328_28871853_28871969_28873483_28873527_28874906_28875003_28878841_28879027_28880085_28880194_28882011_28882135_28882732_28882928_28886830_28886966_28889053
transcript_68700.known	chr19	+	2859	1	FSM	ENSMUSG00000040105.4	ENSMUST00000045674.4	2859	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAATTTCTGCTTTGAT	NA	False	NA	NA	False	AATAAA	-35	NA	28941352	28944211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_28941400_28944200
transcript_68701.known	chr19	+	2285	1	FSM	ENSMUSG00000024935.12	ENSMUST00000237545.2	2285	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	28812534	28814819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_28812500_28814800
transcript_68703.known	chr19	+	4079	7	FSM	ENSMUSG00000024780.8	ENSMUST00000225310.2	4079	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	62.7147421974203	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTATCTGTAACATTTCT	3821	False	NA	NA	False	ATTAAA	-28	NA	28967751	28993171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28990187
transcript_68707.known	chr19	+	5179	7	FSM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_6	22.9449825064702	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTAGTTATGATTTTGTC	3969	False	NA	11	True	AATAAA	-22	NA	28967899	28997637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405
transcript_68708.known	chr19	+	2944	7	FSM	ENSMUSG00000024780.8	ENSMUST00000224511.2	2944	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	71.3755716069736	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTTCTCATTGCTGTAAC	3850	False	NA	21	True	AGTAAA	-33	NA	28967780	29004081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_29002203
transcript_68709.known	chr19	+	4163	6	FSM	ENSMUSG00000024780.8	ENSMUST00000225210.2	4163	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_5	18.3019124683734	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGTAG	3836	False	NA	NA	False	ATTAAA	-27	NA	28967766	28992536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288
transcript_68713.known	chr19	+	1769	5	FSM	ENSMUSG00000024780.8	ENSMUST00000224599.2	1769	5	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_2	16.2692194035239	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAGAAGAAAAAGAAAGAAA	3954	False	NA	NA	False	NA	NA	NA	28967884	28986067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972
transcript_68715.known	chr19	-	2809	5	FSM	ENSMUSG00000024782.8	ENSMUST00000025696.5	2809	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	7.58287544405155	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGGCTGTCTCCATGTT	NA	False	NA	-1	True	AATAAA	-16	NA	29025361	28998232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_29000347_29003611_29003731_29004570_29004744_29015271_29015392_29025078
transcript_68718.nic	chr19	+	612	2	ISM	ENSMUSG00000024780.8	ENSMUST00000224599.2	1769	5	-145	13345	-12	-13345	5prime_fragment	FALSE	canonical	3	198	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGATCTTTGTTGGACCA	3809	False	NA	NA	False	NA	NA	NA	28967739	28972722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_28968070_28972440
transcript_68719.known	chr19	+	1884	9	FSM	ENSMUSG00000024785.8	ENSMUST00000235900.2	1884	9	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_8	128.02514401476	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATCTGGGATTTTATCT	NA	False	NA	113	True	NA	NA	NA	29078774	29121329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120546
transcript_68721.nic	chr19	+	2194	8	NIC	ENSMUSG00000024785.8	novel	1803	9	NA	NA	30	0	intron_retention	FALSE	canonical	3	369	junction_1	17.8885438199983	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGCACTGTAGTGTAAA	NA	False	NA	27	True	CATAAA	-19	NA	29078804	29121243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
transcript_68724.known	chr19	+	5030	25	FSM	ENSMUSG00000024789.14	ENSMUST00000065796.10	5030	25	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_12	5.21749194749951	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTGTTTAAAAATTCTG	NA	False	NA	NA	False	AATAAA	-45	NA	29229227	29290480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_29229519_29229836_29229920_29239582_29239834_29248750_29248875_29252401_29252520_29254149_29254296_29259716_29260039_29260941_29261062_29262236_29262395_29263700_29263813_29265300_29265488_29266073_29266202_29268566_29268702_29272255_29272344_29273041_29273170_29273909_29274049_29275692_29275845_29275987_29276139_29276878_29277016_29278308_29278499_29279011_29279137_29279298_29279472_29286994_29287113_29288327_29288442_29289140
transcript_68726.known	chr19	-	708	2	FSM	ENSMUSG00000050957.5	ENSMUST00000052380.5	708	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGCTTATATGTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	29302756	29298743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_29299140_29302444
transcript_68727.known	chr19	-	1020	6	FSM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	10.1390334845093	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAATGTCCTGCTGCTTG	NA	False	NA	1	True	AATAAA	-21	NA	29339370	29325998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29339196
transcript_68731.nnic	chr19	-	705	5	NIC	ENSMUSG00000016495.13	novel	1012	7	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339292	29326104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
transcript_68732.known	chr19	-	604	4	FSM	ENSMUSG00000016495.13	ENSMUST00000152936.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	25.1042271783503	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAATTTCTCGTGTGTA	NA	False	NA	-77	True	AATAAA	-43	NA	29339273	29326076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_29326406_29335716_29335804_29338216_29338328_29339196
transcript_68737.known	chr19	-	7058	15	FSM	ENSMUSG00000046324.13	ENSMUST00000159692.8	7058	15	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	30.8387014999672	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTAAATGTTTAAGCT	NA	False	NA	NA	False	NA	NA	NA	29625815	29585613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_29590080_29590168_29590333_29593122_29593239_29593916_29594120_29595217_29595371_29600468_29600660_29601040_29601216_29604246_29604468_29606003_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366_29623669_29625435
transcript_68746.known	chr19	-	1950	7	FSM	ENSMUSG00000046324.13	ENSMUST00000159243.2	1950	7	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_3	23.0410262117139	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATATA	NA	False	NA	NA	False	AAAAAG	-28	NA	29625790	29605397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366_29623669_29625435
transcript_68748.known	chr19	-	1902	2	FSM	ENSMUSG00000046324.13	ENSMUST00000160907.2	1902	2	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATGACTCATAATTTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	29625778	29622109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_29623669_29625435
transcript_68754.known	chr19	-	4575	1	FSM	ENSMUSG00000074909.6	ENSMUST00000099525.5	4575	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTCCTTCTACTGTGTT	NA	False	NA	-1	True	AATAAA	-21	NA	29790374	29785799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_29785800_29790400
transcript_68757.known	chr19	+	3536	16	FSM	ENSMUSG00000024817.14	ENSMUST00000025739.14	3536	16	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_4	27.709124048868	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACGCATCCAGCTTT	4085	False	NA	25	True	AATAAA	-15	NA	30007912	30071122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_30008332_30016463_30016698_30033634_30033895_30048642_30048862_30051293_30051404_30052483_30052671_30055413_30055538_30055939_30056048_30057238_30057344_30060133_30060241_30063645_30063809_30064575_30064717_30065878_30065976_30066585_30066744_30069440_30069540_30070117
transcript_68758.nnic	chr19	+	3371	15	NIC	ENSMUSG00000024817.14	novel	3536	16	NA	NA	-95	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	68.3643077301933	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGACGCATCCAGCTTT	3990	False	NA	25	True	AATAAA	-15	NA	30007817	30071122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_30008332_30016463_30016698_30048642_30048862_30051293_30051404_30052483_30052671_30055413_30055538_30055939_30056048_30057238_30057344_30060133_30060241_30063645_30063809_30064575_30064717_30065878_30065976_30066585_30066744_30069440_30069540_30070117
transcript_68764.known	chr19	+	3231	3	FSM	ENSMUSG00000024817.14	ENSMUST00000134518.8	3231	3	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	21.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAACAACAG	4085	False	NA	NA	False	AATAAA	-15	NA	30007912	30036212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_30008332_30016463_30016698_30033634
transcript_68772.known	chr19	-	3767	25	FSM	ENSMUSG00000024827.11	ENSMUST00000025778.9	3767	25	0	0	0	0	multi-exon	FALSE	canonical	1	455	junction_4	183.478351735445	1962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGAATTTCCCATTTGATT	NA	False	NA	-7	True	AATAAA	-16	NA	30152829	30075846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_30076511_30077236_30077318_30078142_30078316_30080378_30080475_30088072_30088185_30091121_30091264_30092587_30092701_30093798_30093949_30095942_30096069_30102121_30102198_30109071_30109215_30110879_30110922_30111094_30111180_30111589_30111688_30113903_30113985_30114492_30114633_30116674_30116781_30120759_30120857_30122546_30122744_30123017_30123166_30124568_30124647_30128821_30128987_30135913_30136050_30151823_30151903_30152390
transcript_68798.known	chr19	-	2866	19	FSM	ENSMUSG00000024827.11	ENSMUST00000235189.2	2866	19	0	0	0	0	multi-exon	FALSE	canonical	3	1040	junction_5	88.9916073168673	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAATAGCTTAT	NA	False	NA	NA	False	NA	NA	NA	30152829	30092220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_30092701_30093798_30093949_30095942_30096069_30102121_30102198_30109071_30109215_30110879_30110922_30111094_30111180_30111589_30111688_30113903_30113985_30114492_30114633_30116674_30116781_30120759_30120857_30122546_30122744_30123017_30123166_30124568_30124647_30128821_30128987_30135913_30136050_30151823_30151903_30152390
transcript_6880.nic	chr1	-	2229	11	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	-7	6348	-7	1175	5prime_fragment	FALSE	canonical	2	3444	junction_1	813.663542258101	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAATAAGAATAAGAGTGGC	NA	False	NA	NA	False	AAAAAG	-44	NA	178165369	178158255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
transcript_68809.known	chr19	-	3665	10	FSM	ENSMUSG00000040451.19	ENSMUST00000099514.10	3665	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	73.0506335477551	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTATTATATTGTGTT	8331	False	NA	-1	True	AATAAA	-18	NA	32365912	32100126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32225393_32225437_32266940_32267032_32329344_32329424_32365619
transcript_68820.nnic	chr19	-	3481	7	NNC	ENSMUSG00000040451.19	novel	4036	10	NA	NA	-3561	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	60.6538447988987	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTGGCTATTATATTGT	4015	False	NA	-4	True	AATAAA	-15	NA	32219787	32100129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219462
transcript_68824.nnic	chr19	-	2398	7	NNC	ENSMUSG00000040451.19	novel	2593	11	NA	NA	-3510	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	60.6538447988987	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTTATAAAGTGATTTTT	4066	False	NA	NA	False	AAAAAG	-15	NA	32219736	32101161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219462
transcript_68825.nnic	chr19	-	2357	7	NNC	ENSMUSG00000040451.19	novel	2593	11	NA	NA	-3510	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_6	68.5362839831736	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTTATAAAGTGATTTTT	4066	False	NA	NA	False	AAAAAG	-15	NA	32219736	32101161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219503
transcript_68827.known	chr19	-	3262	6	FSM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	43.4069118920017	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGCTATTATATTGTGT	8019	False	NA	-2	True	AATAAA	-17	NA	32188413	32100127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32188227
transcript_68837.nic	chr19	-	2334	2	ISM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	-18	35506	-18	22	5prime_fragment	FALSE	canonical	3	81	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGCTGTTGTTGTTGCT	8001	False	NA	NA	False	AAAAAG	-12	NA	32188431	32135633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_32137764_32188227
transcript_68840.known	chr19	-	714	1	FSM	ENSMUSG00000062456.5	ENSMUST00000078034.5	714	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4001	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGTTAGTAAAAATGTG	NA	False	NA	NA	False	AATAAA	-35	NA	32443978	32443264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_32443300_32444000
transcript_68842.known	chr19	+	2613	5	FSM	ENSMUSG00000024896.10	ENSMUST00000025827.10	2613	5	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_4	28.9687331445474	739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCTGCACTCATTGAAAT	NA	False	NA	23	True	AATAAA	-30	NA	32463168	32492764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_32463960_32468737_32468936_32471270_32471369_32475783_32475918_32491372
transcript_68844.known	chr19	+	2276	1	FSM	ENSMUSG00000118106.2	ENSMUST00000235511.2	2276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTATTAGATATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	32463322	32465598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_32463300_32465600
transcript_68852.known	chr19	-	3771	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAGCCTCTCTTAAAG	NA	False	NA	NA	False	AATAAA	-21	NA	32689731	32649037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
transcript_68863.known	chr19	+	8292	9	FSM	ENSMUSG00000013663.8	ENSMUST00000013807.8	8292	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	9.39331544237709	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGCTTCTTAGCTTTT	7593	False	NA	4	True	ATTAAA	-19	NA	32734896	32803560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_32735924_32753414_32753500_32769948_32769994_32775470_32775515_32777260_32777500_32789095_32789238_32792816_32792984_32795235_32795461_32797242
transcript_68868.nic	chr19	+	1942	8	ISM	ENSMUSG00000013663.8	ENSMUST00000013807.8	8292	9	-51	8183	-51	0	5prime_fragment	FALSE	canonical	3	125	junction_6	9.45450977587103	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTGTACTCACCCTAACA	7542	False	NA	NA	False	NA	NA	NA	32734845	32795377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_32735924_32753414_32753500_32769948_32769994_32775470_32775515_32777260_32777500_32789095_32789238_32792816_32792984_32795235
transcript_68870.known	chr19	-	1597	7	FSM	ENSMUSG00000071573.15	ENSMUST00000096114.13	1597	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	3.8151743807532	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCGTTTTATAGCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	33369665	33115146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33367316_33367460_33368479_33368586_33369354
transcript_68871.known	chr19	-	2839	11	FSM	ENSMUSG00000024766.16	ENSMUST00000112508.9	2839	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	12.3109707172099	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGTTTCTTAAAAGT	NA	False	NA	-1	True	NA	NA	NA	33567708	33532559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_33533880_33534506_33534579_33535664_33535737_33536911_33537056_33556761_33556899_33557864_33557975_33559452_33559652_33560446_33560565_33562269_33562376_33565600_33565744_33567290
transcript_68880.known	chr19	+	1988	11	FSM	ENSMUSG00000024776.19	ENSMUST00000239240.2	1988	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	14.1918990977247	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGGTTGTCACATTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	34169628	34217733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_34169996_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
transcript_68881.known	chr19	+	2024	11	FSM	ENSMUSG00000024776.19	ENSMUST00000054956.15	2024	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	15.5630973780928	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGGTTGTCACATTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	34169628	34217733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_34170032_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
transcript_68885.known	chr19	+	1481	9	FSM	ENSMUSG00000024778.14	ENSMUST00000025691.13	1481	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	3.55096817783545	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCTGTTGTCTTGCTTG	NA	False	NA	NA	False	ATTAAA	-22	NA	34268065	34305172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_34268145_34284524_34284679_34292578_34292717_34293968_34294078_34295989_34296052_34296182_34296237_34296709_34296790_34297960_34297986_34304392
transcript_68886.known	chr19	-	2965	10	FSM	ENSMUSG00000024781.17	ENSMUST00000178114.2	2965	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	13.9283882771841	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCGGTGTGGTGTTTGC	5915	False	NA	-2	True	AATAAA	-20	NA	34504874	34469717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_34471614_34472459_34472532_34477496_34477569_34478902_34479050_34484408_34484546_34486388_34486499_34488222_34488422_34500821_34500940_34502137_34502243_34504765
transcript_68894.known	chr19	-	7414	7	FSM	ENSMUSG00000033610.17	ENSMUST00000036584.13	7414	7	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	13.7204227340122	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTATTTGACTCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	34856855	34784339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_34789788_34791091_34791218_34798499_34798624_34799112_34799290_34804519_34804774_34818156_34818510_34855923
transcript_68897.known	chr19	-	2760	7	FSM	ENSMUSG00000033610.17	ENSMUST00000112460.3	2760	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	45.38232646698	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTTAGTGTACATGTTA	815	False	NA	-12	True	AATAAA	-18	NA	34855317	34788293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_34789788_34791091_34791218_34798499_34798624_34799112_34799290_34804519_34804774_34818156_34818510_34855085
transcript_68910.nic	chr19	+	2666	19	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-34	25838	-34	12955	5prime_fragment	FALSE	canonical	3	97	junction_15	72.1994835999453	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAGGAGGAAAAAGCAG	NA	False	NA	NA	False	AAAAAG	-34	NA	34899726	34927297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983_34925126_34927140
transcript_68912.nic	chr19	+	2495	19	ISM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	-65	25899	-34	12904	5prime_fragment	FALSE	canonical	3	103	junction_1	63.1094727878118	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATGAAGAGCTAAAAAGAC	NA	False	NA	NA	False	AATAGA	-15	NA	34899726	34927246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140
transcript_68913.nic	chr19	+	2546	19	ISM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	-65	25848	-34	12955	5prime_fragment	FALSE	canonical	3	103	junction_1	63.1094727878118	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAGGAGGAAAAAGCAG	NA	False	NA	NA	False	AAAAAG	-34	NA	34899726	34927297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140
transcript_68914.nic	chr19	+	3584	19	ISM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	-65	24810	-34	13993	5prime_fragment	FALSE	canonical	3	103	junction_1	63.1094727878118	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAGAAGAAAATGAAATTA	NA	False	NA	NA	False	NA	NA	NA	34899726	34928335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140
transcript_68919.nic	chr19	+	2455	18	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-34	28064	-34	10729	5prime_fragment	FALSE	canonical	3	97	junction_15	73.2839196002255	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAGATTAAATGAAGAT	NA	False	NA	NA	False	NA	NA	NA	34899726	34925071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983
transcript_68920.nic	chr19	+	2335	18	ISM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	-65	28074	-34	10729	5prime_fragment	FALSE	canonical	3	103	junction_1	63.9679309792933	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAGATTAAATGAAGAT	NA	False	NA	NA	False	NA	NA	NA	34899726	34925071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983
transcript_68922.nic	chr19	+	2286	16	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-34	34340	-34	4453	5prime_fragment	FALSE	canonical	3	97	junction_15	76.5623638320785	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAATTAATTAAAGCCCA	NA	False	NA	NA	False	ACTAAA	-1	NA	34899726	34918795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612
transcript_68926.nic	chr19	+	1884	14	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-34	35888	-34	2905	5prime_fragment	FALSE	canonical	3	103	junction_1	63.9200684286946	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAACATTGGAACTTAAAAT	NA	False	NA	NA	False	AATAAA	-28	NA	34899726	34917247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187
transcript_68928.nic	chr19	+	1657	13	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-34	37362	-34	1431	5prime_fragment	FALSE	canonical	3	103	junction_1	65.2998957800768	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTTCATGGGAAAATAGT	NA	False	NA	NA	False	AATAAA	-23	NA	34899726	34915773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652
transcript_68929.nic	chr19	+	1727	13	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-34	37292	-34	1501	5prime_fragment	FALSE	canonical	3	103	junction_1	65.2998957800768	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAGAAACACAAAACATGG	NA	False	NA	NA	False	AAGAAA	-2	NA	34899726	34915843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652
transcript_68930.nic	chr19	+	1824	13	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-34	37195	-34	1598	5prime_fragment	FALSE	canonical	3	103	junction_1	65.2998957800768	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTATTAAGAACTTTGCT	NA	False	NA	NA	False	AAAAAG	-7	NA	34899726	34915940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652
transcript_68933.nic	chr19	+	1443	12	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-34	38355	-34	438	5prime_fragment	FALSE	canonical	3	103	junction_1	66.8403797388702	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAAATATGCATGATCAT	NA	False	NA	NA	False	AGTAAA	-37	NA	34899726	34914780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713
transcript_68938.known	chr19	+	573	4	FSM	ENSMUSG00000024795.12	ENSMUST00000225151.2	573	4	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	99.267315869827	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCGGTGTACTTTATAAG	9226	False	NA	2	True	AATAAA	-13	NA	34947480	34953134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_34947518_34950258_34950410_34951827_34951971_34952892
transcript_68944.known	chr19	+	1145	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	0	0	0	0	multi-exon	FALSE	canonical	3	930	junction_4	72.6416547168359	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061130	36082177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
transcript_68952.known	chr19	+	1626	10	FSM	ENSMUSG00000024805.17	ENSMUST00000225411.2	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_8	28.4843470118477	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387147	36433592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
transcript_68954.known	chr19	+	6443	9	FSM	ENSMUSG00000024805.17	ENSMUST00000225920.2	6443	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	36.9382931386928	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGGCCTGTTAATGTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	36325708	36438370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_36325970_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
transcript_68956.known	chr19	+	1566	9	FSM	ENSMUSG00000024805.17	ENSMUST00000062389.6	1566	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	19.6580136331217	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387147	36433592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
transcript_68962.known	chr19	-	2725	2	FSM	ENSMUSG00000067279.4	ENSMUST00000087321.4	2725	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGAGAATGTTTTCTTTCC	NA	False	NA	1	True	AATAAA	-17	NA	36714053	36709130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_36711755_36713952
transcript_68967.known	chr19	+	6481	27	FSM	ENSMUSG00000024811.12	ENSMUST00000025729.12	6481	27	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_17	101.711420291683	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTCTTGATTGTGCCT	NA	False	NA	16	True	AATAAA	-22	NA	36811631	36870877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_36812137_36822933_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822_36849989_36851196_36851417_36852663_36852774_36853584_36853774_36856634_36856888_36857909_36857993_36859076_36859198_36861465_36861564_36862882_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
transcript_68969.nic	chr19	+	5725	26	NIC	ENSMUSG00000024811.12	novel	6481	27	NA	NA	-32	-599	combination_of_known_junctions	FALSE	canonical	3	243	junction_17	153.021912156397	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGGGTAGCATGGTAA	NA	False	NA	23	True	AATAAA	-12	NA	36811599	36870278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_36812137_36822933_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822_36849989_36851196_36851417_36852663_36852774_36856634_36856888_36857909_36857993_36859076_36859198_36861465_36861564_36862882_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
transcript_68977.nic	chr19	+	2203	16	ISM	ENSMUSG00000024811.12	ENSMUST00000025729.12	6481	27	-32	19655	-32	1359	5prime_fragment	FALSE	canonical	3	732	junction_8	59.3811043645666	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGATGGTAATACTCCTC	NA	False	NA	NA	False	AAGAAA	-3	NA	36811599	36851222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_36812137_36822933_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822_36849989_36851196
transcript_68978.nic	chr19	+	2144	15	ISM	ENSMUSG00000024811.12	ENSMUST00000025729.12	6481	27	-32	20922	-32	92	5prime_fragment	FALSE	canonical	3	732	junction_8	58.1925463352446	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAATATGAAATATGCAA	NA	False	NA	NA	False	NA	NA	NA	36811599	36849955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_36812137_36822933_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822
transcript_68980.nic	chr19	+	1519	10	ISM	ENSMUSG00000024811.12	ENSMUST00000025729.12	6481	27	-32	31315	-32	-158	5prime_fragment	FALSE	canonical	3	732	junction_8	36.9637794016564	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAAAGACTAAAGAGTAAG	NA	False	NA	NA	False	AAGAAA	-43	NA	36811599	36839562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_36812137_36822933_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485
transcript_68987.nic	chr19	+	860	3	ISM	ENSMUSG00000024811.12	ENSMUST00000168656.8	1078	8	-204	6551	-32	-5626	5prime_fragment	FALSE	canonical	3	815	junction_1	21	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGTGTGCTCTTCGGT	NA	False	NA	NA	False	NA	NA	NA	36811599	36826786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_36812137_36822933_36823159_36826688
transcript_68988.nic	chr19	+	735	2	ISM	ENSMUSG00000024811.12	ENSMUST00000168656.8	1078	8	-204	10206	-32	-9281	5prime_fragment	FALSE	canonical	3	815	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAAAAATTGATGTT	NA	False	NA	NA	False	NA	NA	NA	36811599	36823131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_36812137_36822933
transcript_68989.known	chr19	+	7204	38	FSM	ENSMUSG00000040565.9	ENSMUST00000099494.4	7204	38	0	0	0	0	multi-exon	TRUE	canonical	3	111	junction_9	14.2774858907343	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTCTGTGCAATTGTGT	NA	False	NA	9	True	AATAAA	-11	NA	36903478	36990152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_36903802_36922611_36922736_36926467_36926583_36928433_36928578_36933770_36933935_36935772_36935910_36939038_36939169_36939830_36939900_36943017_36943108_36943891_36943988_36944075_36944253_36946455_36946597_36947313_36947439_36950297_36950419_36955714_36955820_36957976_36958127_36958386_36958530_36959046_36959222_36960848_36961053_36963854_36964282_36965380_36965572_36966275_36966430_36966787_36966898_36968122_36968325_36969835_36969985_36971669_36971823_36971990_36972113_36972198_36972367_36973929_36974008_36974905_36975036_36977491_36977634_36977716_36977848_36979813_36979940_36980887_36981041_36981831_36982044_36986979_36987140_36987411_36987583_36988660
transcript_68994.nic	chr19	+	2948	20	ISM	ENSMUSG00000040565.9	ENSMUST00000099494.4	7204	38	19	26064	19	-3265	5prime_fragment	FALSE	canonical	3	111	junction_9	10.7816402886119	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAATACGCTAGTGCA	NA	False	NA	NA	False	ATTAAA	-4	NA	36903497	36964088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_36903802_36922611_36922736_36926467_36926583_36928433_36928578_36933770_36933935_36935772_36935910_36939038_36939169_36939830_36939900_36943017_36943108_36943891_36943988_36944075_36944253_36946455_36946597_36947313_36947439_36950297_36950419_36955714_36955820_36957976_36958127_36958386_36958530_36959046_36959222_36960848_36961053_36963854
transcript_68998.known	chr19	-	4224	11	FSM	ENSMUSG00000039652.17	ENSMUST00000126188.8	4224	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	3.9255572852781	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATGGAGAA	9194	False	NA	NA	False	NA	NA	NA	37184872	37000369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_37002488_37021921_37022104_37031659_37031775_37045572_37045692_37064937_37065028_37065819_37065988_37083190_37083215_37103731_37103789_37116530_37116622_37151366_37152386_37184631
transcript_69.known	SIRV1	-	744	3	FSM	SIRV1A	SIRV107	744	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAGGCGCAAGGTACAT	NA	False	NA	NA	False	GATAAA	-18	NA	11643	10647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV1_-_10792_10882_11243_11403
transcript_69005.known	chr19	+	1809	6	FSM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	49.1747902893342	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGTACTTTTGACTCG	NA	False	NA	25	True	ATTAAA	-33	NA	37184941	37199550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
transcript_69011.nnic	chr19	+	1857	6	NNC	ENSMUSG00000023307.15	novel	1809	6	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_3	270.070064983145	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGTACTTTTGACTCG	NA	False	NA	25	True	ATTAAA	-33	NA	37184935	37199550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_37185304_37188069_37188273_37194581_37194755_37197701_37197886_37198037_37198205_37198788
transcript_69014.known	chr19	+	1293	5	FSM	ENSMUSG00000023307.15	ENSMUST00000112391.8	1293	5	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	54.8475158963467	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACTGTTTCCTGTCATC	NA	False	NA	12	True	AATAAA	-20	NA	37184966	37198475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037
transcript_6902.known	chr1	+	471	4	FSM	ENSMUSG00000026500.7	ENSMUST00000027781.7	471	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.5150037981793	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTTTACATGAAATCC	NA	False	NA	20	True	ATTAAA	-23	NA	178146694	178150258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_178146774_178149309_178149425_178149506_178149571_178150045
transcript_69020.known	chr19	+	991	3	FSM	ENSMUSG00000023307.15	ENSMUST00000148105.2	991	3	0	0	0	0	multi-exon	FALSE	canonical	3	710	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAAAAAAAATAGTGGA	NA	False	NA	NA	False	AGTAAA	-24	NA	37184974	37195040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_37185304_37188069_37188273_37194581
transcript_69025.known	chr19	-	5059	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	0	0	0	0	multi-exon	TRUE	canonical	3	707	junction_13	63.1947496940125	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGCTTTGTGTTGTGTG	NA	False	NA	-2	True	AATAAA	-18	NA	37340010	37246141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
transcript_69044.known	chr19	-	642	1	FSM	ENSMUSG00000080885.2	ENSMUST00000121321.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	False	NA	NA	False	AATATA	-45	NA	37273195	37272553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_37272600_37273200
transcript_69046.known	chr19	+	4819	22	FSM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_17	34.0452546631592	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGTGCTGCCTGTACAT	NA	False	NA	8	True	ATTAAA	-15	NA	37364850	37410307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923_37398050_37398173_37398333_37398974_37399082_37399778_37400059_37401568_37401792_37404937_37405081_37406348_37406466_37408706
transcript_69056.nic	chr19	+	2284	15	ISM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	-92	12255	-92	3833	5prime_fragment	TRUE	canonical	3	286	junction_7	24.9089157056796	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGTTTTCTTCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	37364758	37398052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923
transcript_69061.nic	chr19	+	1350	9	ISM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	-92	28137	-92	-12049	5prime_fragment	FALSE	canonical	3	286	junction_7	24.456274757207	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACATAATGAATAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	37364758	37382170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132
transcript_69064.known	chr19	-	1748	1	FSM	ENSMUSG00000102353.2	ENSMUST00000192635.2	1748	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTATTTCTAAGTCCAT	NA	False	NA	NA	False	AGTAAA	-2	NA	37423104	37421356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_37421400_37423100
transcript_69065.known	chr19	+	1802	4	FSM	ENSMUSG00000024986.13	ENSMUST00000025944.9	1802	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	4.18993502999218	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGCACGCGTGT	NA	False	NA	79	True	NA	NA	NA	37423257	37429179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_37423682_37425636_37425816_37426014_37426066_37428031
transcript_69069.known	chr19	+	2692	22	FSM	ENSMUSG00000053799.9	ENSMUST00000238817.2	2692	22	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_2	21.0093381678108	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTGCTTGCATTTTTT	1910	False	NA	NA	False	AATAAA	-38	NA	37538906	37671703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_37539014_37558830_37559003_37560046_37560089_37560305_37560397_37562159_37562206_37565383_37565589_37566867_37567024_37570640_37570710_37574258_37574343_37576085_37576133_37576264_37576386_37578298_37578371_37579315_37579414_37582109_37582216_37585542_37585653_37587013_37587126_37588006_37588142_37597373_37597554_37628069_37628212_37641830_37641905_37670107_37670221_37671293
transcript_69072.known	chr19	-	6633	54	FSM	ENSMUSG00000048612.17	ENSMUST00000226068.2	6633	54	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_16	23.3368693179296	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTGTGGTATTTTGTAT	8904	False	NA	-83	True	NA	NA	NA	38031799	37887757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913153_37915430_37915443_37919433_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
transcript_69077.nic	chr19	-	3747	32	ISM	ENSMUSG00000048612.17	ENSMUST00000226068.2	6633	54	-121	38437	-73	9979	5prime_fragment	FALSE	canonical	3	104	junction_6	13.0618475968402	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGACTCTACTGGTATGC	8783	False	NA	NA	False	AATAAA	-13	NA	38031920	37926194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
transcript_69078.nic	chr19	-	2785	26	ISM	ENSMUSG00000048612.17	ENSMUST00000223650.2	3066	27	-71	1899	-30	-1899	5prime_fragment	FALSE	canonical	3	120	junction_7	11.3388535575692	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGAGAGAATTCTTTTT	8826	False	NA	NA	False	AATAAA	-2	NA	38031877	37938072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
transcript_69080.known	chr19	-	3066	27	FSM	ENSMUSG00000048612.17	ENSMUST00000223650.2	3066	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	29.2210763281428	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTTTCTCTGGTTCACT	8897	False	NA	NA	False	NA	NA	NA	38031806	37936173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_37936452_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
transcript_69081.nnic	chr19	+	2502	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-64	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	90.951078967938	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043394	38062869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_38043530_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_69082.known	chr19	+	2442	10	FSM	ENSMUSG00000024989.16	ENSMUST00000236044.2	2442	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	104.602716958317	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043484	38062871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_38043530_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_69083.nic	chr19	+	2592	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_2	84.0640555296898	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043394	38062869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_69085.nic	chr19	+	2616	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_2	88.367917758024	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043394	38062869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_69086.nnic	chr19	+	2634	10	NNC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	109.160432391962	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043498	38062869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_38043766_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_69088.nic	chr19	+	2647	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_2	120.180419924933	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043513	38062869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_38043766_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_69089.known	chr19	+	2683	10	FSM	ENSMUSG00000024989.16	ENSMUST00000237408.2	2683	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	135.940982110929	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043536	38062869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_38043766_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
transcript_6909.known	chr1	+	670	2	FSM	ENSMUSG00000026500.7	ENSMUST00000154437.2	670	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTATAAAGAACATTTGTA	NA	False	NA	NA	False	NA	NA	NA	178146694	178149900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_178146774_178149309
transcript_69090.known	chr19	+	2757	10	FSM	ENSMUSG00000024989.16	ENSMUST00000169673.3	2757	10	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	107.147988119351	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043489	38062869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_38043766_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_69095.nic	chr19	+	2838	9	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-64	0	intron_retention	FALSE	canonical	3	204	junction_1	54.1548705104167	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043394	38062869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_38043530_38045857_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_69097.nic	chr19	+	2955	9	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-23	0	intron_retention	FALSE	canonical	3	91	junction_1	88.100705871179	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043513	38062869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_38043766_38045857_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_69098.known	chr19	+	1440	9	FSM	ENSMUSG00000024989.16	ENSMUST00000116506.8	1440	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_8	149.494512859168	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACCATTCTTGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	38043487	38061946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_38043530_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
transcript_6910.nic	chr1	-	990	2	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	-122	11793	-122	-494	5prime_fragment	FALSE	canonical	3	5641	junction_1	0	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTGGAGATAAAAAGAGAGG	NA	False	NA	3	True	AAAACA	-10	NA	178165484	178163700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_178163724_178164517
transcript_69116.known	chr19	-	937	6	FSM	ENSMUSG00000024990.14	ENSMUST00000112335.4	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	4.31740662898458	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCCTATGAGTTGAAGA	5209	False	NA	-5	True	ATTAAA	-13	NA	38113276	38105077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966_38113096_38113205
transcript_69117.known	chr19	-	1161	6	FSM	ENSMUSG00000024990.14	ENSMUST00000025951.14	1161	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.15142259969188	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCCTATGAGTTGAAGAC	4789	False	NA	-4	True	ATTAAA	-14	NA	38113696	38105076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966_38113096_38113402
transcript_69118.known	chr19	-	1402	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	0	0	0	0	multi-exon	TRUE	canonical	3	295	junction_2	36.3583414649629	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212586	38176928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
transcript_6912.known	chr1	+	3580	7	FSM	ENSMUSG00000026495.9	ENSMUST00000027775.9	3580	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	10.1447851956888	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGACTCTGCTTTGTGT	NA	False	NA	8	True	NA	NA	NA	178233667	178312078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_178233699_178264966_178265052_178283380_178283454_178302446_178302527_178303249_178303293_178303389_178303457_178308877
transcript_69122.nic	chr19	-	846	10	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	0	13065	0	2997	5prime_fragment	FALSE	canonical	3	299	junction_1	35.9004109471304	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTTTTCTTTTAAAAT	NA	False	NA	NA	False	ATTAAA	-14	NA	38212586	38189993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
transcript_69124.nic	chr19	-	1006	9	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	-51	16062	-33	0	5prime_fragment	FALSE	canonical	3	315	junction_8	31.196954979613	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTCTTTAGCATTATGG	NA	False	NA	NA	False	AATAAA	-10	NA	38212637	38192990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
transcript_69130.known	chr19	+	3474	3	FSM	ENSMUSG00000044026.4	ENSMUST00000054098.4	3474	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	3	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGTCTCACGACTCGT	NA	False	NA	35	True	AATAAA	-36	NA	38384427	38394058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_38384750_38388881_38389063_38391087
transcript_69132.nnic	chr19	+	3509	2	NIC	ENSMUSG00000044026.4	novel	3474	3	NA	NA	-218	-2	combination_of_known_splicesites	FALSE	canonical	3	41	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAGTGTCTCACGACTC	NA	False	NA	33	True	AATAAA	-34	NA	38384209	38394056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_38384750_38391087
transcript_69133.known	chr19	+	8357	33	FSM	ENSMUSG00000024998.18	ENSMUST00000182481.8	8357	33	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_11	5.14743564797074	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATTTCTAAGAAGCAAAAG	NA	False	NA	NA	False	NA	NA	NA	38469568	38771874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_38469805_38512358_38513897_38608886_38609176_38640238_38640556_38686893_38687040_38690263_38690523_38693683_38693890_38705007_38705684_38707999_38708183_38709417_38709536_38710255_38710365_38713144_38713268_38713353_38713491_38715211_38715451_38717126_38717189_38717270_38717437_38724874_38724983_38726366_38726484_38727691_38727851_38734209_38734340_38737735_38737858_38738884_38739003_38747258_38747391_38748422_38748711_38753743_38753908_38755575_38755838_38757894_38758014_38758790_38758920_38761263_38761474_38766300_38766460_38768209_38768429_38769003_38769227_38770980
transcript_69136.known	chr19	-	3977	21	FSM	ENSMUSG00000024999.8	ENSMUST00000025963.8	3977	21	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	18.6711006638602	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTAGTCTTACGAGGTT	2288	False	NA	NA	False	AATAAA	-17	NA	38807681	38776571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
transcript_69149.nic	chr19	-	565	4	ISM	ENSMUSG00000024999.8	ENSMUST00000025963.8	3977	21	-30	26667	-30	-26667	5prime_fragment	FALSE	canonical	3	274	junction_1	13.5973853695808	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGAAAAAGTGCCAAGAAC	2258	False	NA	NA	False	AAGAAA	-28	NA	38807711	38803238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_38803288_38804026_38804160_38806381_38806590_38807536
transcript_6915.known	chr1	-	6871	12	FSM	ENSMUSG00000055067.16	ENSMUST00000128302.8	6871	12	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	34.6080772113168	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGTTCTCTGCTGTTC	NA	False	NA	NA	False	AATAAA	-15	NA	179345599	178779524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899_178921968_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
transcript_69150.known	chr19	+	4209	13	FSM	ENSMUSG00000048720.9	ENSMUST00000037302.6	4209	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_10	4.85555237731907	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATCCATCCATCAATCT	NA	False	NA	NA	False	NA	NA	NA	38825022	38908367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_38825891_38854059_38854184_38871102_38871219_38884430_38884514_38887312_38887431_38889752_38889860_38896215_38896297_38899450_38899540_38901634_38901707_38902372_38902502_38902747_38902858_38905055_38905315_38906314
transcript_69152.known	chr19	+	5868	22	FSM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	0	0	0	0	multi-exon	TRUE	canonical	3	1554	junction_5	143.18806117019	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATGACTTCATCCCA	NA	False	NA	NA	False	AAGAAA	-5	NA	38919358	38959495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
transcript_69188.known	chr19	-	2571	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTGTTCCTGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	40260060	40209616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
transcript_6919.known	chr1	-	1229	6	FSM	ENSMUSG00000055067.16	ENSMUST00000111134.2	1229	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	165.062412438447	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTAGATCAAGGGGCAG	NA	False	NA	NA	False	NA	NA	NA	179345606	179222788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_179223397_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
transcript_69202.nic	chr19	-	2686	24	NIC	ENSMUSG00000025006.19	novel	2582	24	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	19.5313716914923	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCCAGTCTTTACCCAC	9822	False	NA	NA	False	NA	NA	NA	40502261	40283196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40288686_40288747_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
transcript_69206.known	chr19	-	2582	24	FSM	ENSMUSG00000025006.19	ENSMUST00000226047.2	2582	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	21.2079451531295	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCCAGTCTTTACCCAC	9899	False	NA	NA	False	NA	NA	NA	40502184	40283196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40365427_40365461_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
transcript_69210.nic	chr19	-	2626	23	NIC	ENSMUSG00000025006.19	novel	2582	24	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	16.9725105892581	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCCAGTCTTTACCCAC	9822	False	NA	NA	False	NA	NA	NA	40502261	40283196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
transcript_69217.known	chr19	-	3427	19	FSM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_12	241.939820085925	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	40576813	40538700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
transcript_69219.nic	chr19	-	3419	18	NIC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_17	265.434357090177	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	40576865	40538700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40576753
transcript_69220.nic	chr19	-	1895	7	NIC	ENSMUSG00000025007.14	novel	2493	16	NA	NA	-14	1089	intron_retention	FALSE	canonical	3	1135	junction_3	86.92461612736	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCACACCTATTAGTAGCC	NA	False	NA	NA	False	NA	NA	NA	40576881	40561698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
transcript_69223.known	chr19	-	2743	14	FSM	ENSMUSG00000025008.16	ENSMUST00000025981.15	2743	14	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_10	4.39337855732112	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGACTTTTTTTCTTG	NA	False	NA	-1	True	CATAAA	-17	NA	40600677	40584889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_40585987_40591248_40591387_40593749_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
transcript_69226.known	chr19	-	1686	12	FSM	ENSMUSG00000025008.16	ENSMUST00000135795.8	1686	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	4.71501908359634	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGTTCTCAACCCATG	NA	False	NA	NA	False	AATAAA	-15	NA	40600647	40593541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
transcript_69227.known	chr19	+	3819	6	FSM	ENSMUSG00000025010.15	ENSMUST00000025983.13	3819	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	5.32916503778969	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTTGCTGCTTTTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	40819722	40837016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_40819887_40820422_40820533_40825360_40825572_40833103_40833404_40833488_40833649_40834142
transcript_69236.known	chr19	+	6840	5	FSM	ENSMUSG00000049164.8	ENSMUST00000050092.7	6840	5	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	19.3196790863617	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTCTTCTTTTTTTTAA	NA	False	NA	45	True	ATTAAA	-22	NA	40883148	40906391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_40883235_40885527_40885610_40896502_40896648_40899476_40899554_40899941
transcript_6924.known	chr1	-	1047	2	FSM	ENSMUSG00000055067.16	ENSMUST00000194237.2	1047	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTTTCTATTTATTTAT	NA	False	NA	NA	False	ATTAAA	-17	NA	179345570	179335871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_179336701_179345352
transcript_69244.nnic	chr19	-	613	3	NNC	ENSMUSG00000061132.14	novel	1701	17	NA	NA	58655	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	6.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40923936	40917370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_40917737_40922870_40923027_40923845
transcript_69245.known	chr19	-	3170	15	FSM	ENSMUSG00000025016.12	ENSMUST00000237871.2	3170	15	0	0	0	0	multi-exon	FALSE	canonical	3	1017	junction_13	71.1689926176006	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTGTGACAGTAGATG	NA	False	NA	-29	True	AATAAA	-15	NA	41252419	41202230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41203579_41205539_41205617_41205786_41205871_41206608_41206756_41209675_41209745_41211522_41211663_41220781_41220913_41223119_41223215_41227116_41227284_41229015_41229148_41233882_41233961_41235081_41235243_41236344_41236468_41244583_41244780_41252197
transcript_69253.known	chr19	-	8096	14	FSM	ENSMUSG00000025016.12	ENSMUST00000025989.10	8096	14	0	0	0	0	multi-exon	TRUE	canonical	3	1017	junction_12	66.4790753216476	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTTGCTTTCTTTCCTT	NA	False	NA	-1	True	AATAAA	-20	NA	41252436	41199282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41205617_41205786_41205871_41206608_41206756_41209675_41209745_41211522_41211663_41220781_41220913_41223119_41223215_41227116_41227284_41229015_41229148_41233882_41233961_41235081_41235243_41236344_41236468_41244583_41244780_41252197
transcript_69258.known	chr19	+	906	1	FSM	ENSMUSG00000044065.4	ENSMUST00000057038.4	906	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATTTTACTCTGATCT	NA	False	NA	NA	False	AAGAAA	-31	NA	41448251	41449157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_41448300_41449200
transcript_69259.known	chr19	+	4833	8	FSM	ENSMUSG00000025019.18	ENSMUST00000067795.13	4833	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	35.0218590632322	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAAAAAATACAAAAGCT	NA	False	NA	NA	False	TTTAAA	-31	NA	41471075	41550700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313_41534447_41540887_41541176_41544046_41544141_41546749
transcript_69261.nic	chr19	+	3364	8	NIC	ENSMUSG00000025019.18	novel	4833	8	NA	NA	-12	-2289	intron_retention	FALSE	canonical	3	26	junction_7	29.110626434836	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTCAGCAGAAAATGATCC	NA	False	NA	NA	False	NA	NA	NA	41471063	41572686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313_41534447_41540887_41541176_41544046_41544141_41570216
transcript_6927.known	chr1	-	2449	8	FSM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	6.92820323027551	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTGTATATGTGTGT	7878	False	NA	NA	False	AATAAA	-15	NA	179373832	179355619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179372462_179372552_179373386
transcript_69270.known	chr19	-	5045	37	FSM	ENSMUSG00000025020.12	ENSMUST00000025993.10	5045	37	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.47484043916203	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTGTGTGAGGTCAGG	NA	False	NA	NA	False	NA	NA	NA	41732104	41588697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41589129_41589927_41590140_41590525_41590815_41591764_41591920_41592750_41592882_41594798_41595028_41596756_41596895_41599239_41599334_41599440_41599581_41602840_41602939_41603228_41603354_41605103_41605268_41612936_41613009_41613960_41614033_41615679_41615752_41618308_41618378_41619202_41619336_41622593_41622761_41623038_41623183_41625907_41626052_41626215_41626291_41627007_41627153_41627321_41627346_41628141_41628306_41634454_41634599_41635406_41635479_41636954_41637027_41637423_41637496_41637850_41637999_41639115_41639280_41639593_41639666_41640069_41640142_41641133_41641206_41709478_41709551_41715508_41715581_41717493_41717566_41731650
transcript_69271.known	chr19	-	5673	36	FSM	ENSMUSG00000025020.12	ENSMUST00000169141.8	5673	36	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	1.47744953986833	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTGAGGTCAGGCC	NA	False	NA	NA	False	NA	NA	NA	41731931	41588695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41590140_41590525_41590815_41591764_41591920_41592750_41592882_41594798_41595028_41596756_41596895_41599239_41599334_41599440_41599581_41602840_41602939_41603228_41603354_41605103_41605268_41612936_41613009_41613960_41614033_41615679_41615752_41618308_41618378_41619202_41619336_41622593_41622761_41623038_41623183_41625907_41626052_41626215_41626291_41627007_41627153_41627321_41627346_41628141_41628306_41634454_41634599_41635406_41635479_41636954_41637027_41637423_41637496_41637850_41637999_41639115_41639280_41639593_41639666_41640069_41640142_41641133_41641206_41709478_41709551_41715508_41715581_41717493_41717566_41731650
transcript_69272.known	chr19	-	5103	12	FSM	ENSMUSG00000025154.16	ENSMUST00000026150.15	5103	12	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	42.9826026693522	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGGTTCTGACTGGTC	4527	False	NA	NA	False	ATTAAA	-17	NA	41790486	41755026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
transcript_69279.known	chr19	+	2614	1	FSM	ENSMUSG00000067199.5	ENSMUST00000087155.5	2614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTTTTATTTTGTACT	NA	False	NA	NA	False	AATAAA	-34	NA	41818408	41821022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_41818400_41821000
transcript_69280.known	chr19	-	2161	1	FSM	ENSMUSG00000047604.4	ENSMUST00000059231.4	2161	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTTTGTTTTTGTTTGG	NA	False	NA	NA	False	AATAAA	-23	NA	41836571	41834410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41834400_41836600
transcript_69287.known	chr19	-	4340	34	FSM	ENSMUSG00000035049.5	ENSMUST00000038677.5	4340	34	0	0	0	0	multi-exon	TRUE	canonical	3	269	junction_16	39.9184430265499	646	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGATGAGTGGCTTGGC	NA	False	NA	-8	True	AATAAA	-20	NA	41884612	41851289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41851752_41853610_41853694_41853959_41854028_41855144_41855212_41857208_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883817_41884377
transcript_6929.known	chr1	+	4709	11	FSM	ENSMUSG00000038949.9	ENSMUST00000040706.9	4709	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_8	8.09691299199886	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCCGAGAATTTATTTG	NA	False	NA	NA	False	TTTAAA	-17	NA	179373934	179455043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_179374182_179406902_179407334_179420249_179420432_179429266_179429298_179432083_179432171_179432517_179432633_179433812_179433835_179434001_179434099_179437350_179438232_179450331_179450468_179452563
transcript_69321.known	chr19	+	1775	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	0	0	0	0	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	2333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACTGTTTGTCTTGTGT	4060	False	NA	0	True	AATAAA	-17	NA	41900361	41907099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
transcript_69324.known	chr19	-	1018	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_7	62.4257926808842	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921735	41912004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
transcript_69340.nic	chr19	-	384	5	ISM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	-31	2972	-29	-2972	5prime_fragment	FALSE	canonical	3	822	junction_4	73.0513518013185	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAAGGTTGGTGATTGGTG	NA	False	NA	NA	False	NA	NA	NA	41921766	41914976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
transcript_69343.known	chr19	-	1504	2	FSM	ENSMUSG00000034321.15	ENSMUST00000237177.2	1504	2	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	41921737	41920146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41921604_41921690
transcript_69351.nic	chr19	-	3520	31	NIC	ENSMUSG00000025159.9	novel	6607	31	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	137	junction_15	29.8713723971445	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACACTCACGTGTACTGC	NA	False	NA	-8	True	AATAAA	-16	NA	41969631	41932643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
transcript_69355.known	chr19	-	6607	31	FSM	ENSMUSG00000025159.9	ENSMUST00000171561.8	6607	31	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_15	35.2197703317643	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTTGTCCCATAACAAG	NA	False	NA	NA	False	AATAAA	-16	NA	41969596	41929524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
transcript_6936.known	chr1	+	3717	2	FSM	ENSMUSG00000038949.9	ENSMUST00000144370.2	3717	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAAAAAAATCCCATGA	NA	False	NA	NA	False	NA	NA	NA	179374063	179410501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_179374182_179406902
transcript_69360.known	chr19	-	3412	30	FSM	ENSMUSG00000025159.9	ENSMUST00000164776.8	3412	30	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_29	55.4890911711589	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATGGGCACACTCACGTG	NA	False	NA	-14	True	AATAAA	-10	NA	41969575	41932649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41969437
transcript_6938.known	chr1	+	1948	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCCCCTTTTTTGGT	NA	False	NA	12	True	AATAAA	-19	NA	179495774	179514754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
transcript_69383.nic	chr19	+	1925	12	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_8	134.380796050282	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4083	False	NA	18	True	AATAAA	-24	NA	41921872	41932543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_69389.nic	chr19	+	1965	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	121.95691862293	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4083	False	NA	18	True	AATAAA	-24	NA	41921872	41932543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_69392.known	chr19	+	1821	11	FSM	ENSMUSG00000025157.9	ENSMUST00000026154.9	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_7	37.0513157661101	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_69411.nnic	chr19	+	1865	4	NNC	ENSMUSG00000025171.3	novel	1529	3	NA	NA	-439	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	47.1192341005478	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41969762	42023082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_41970310_41970412_41970448_42020327_42020556_42022027
transcript_69412.known	chr19	+	1529	3	FSM	ENSMUSG00000025171.3	ENSMUST00000026170.3	1529	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	5.5	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41970201	42023082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_41970448_42020327_42020556_42022027
transcript_69413.nnic	chr19	+	1373	3	NNC	ENSMUSG00000025171.3	novel	1529	3	NA	NA	-256	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	51	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41969945	42023082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_41970036_42020327_42020556_42022027
transcript_69414.known	chr19	+	1668	7	FSM	ENSMUSG00000025176.15	ENSMUST00000081714.5	1668	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.5723301886761	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGATCAGATATTTCCA	NA	False	NA	NA	False	NA	NA	NA	42034270	42059392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_42034550_42048326_42048456_42048605_42048734_42049366_42049502_42049741_42049839_42051630_42051765_42058626
transcript_69416.nnic	chr19	-	1927	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_4	34.0258725090188	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4128	False	NA	-3	True	AATAAA	-21	NA	42074808	42063380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067100_42067216_42074635
transcript_69417.nnic	chr19	-	1910	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_4	36.2745089560148	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4128	False	NA	-3	True	AATAAA	-21	NA	42074808	42063380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067117_42067216_42074635
transcript_69418.known	chr19	-	1800	5	FSM	ENSMUSG00000049670.10	ENSMUST00000051772.10	1800	5	0	0	0	0	multi-exon	FALSE	canonical	2	63	junction_4	19.0574788468989	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4140	False	NA	-3	True	AATAAA	-21	NA	42074796	42063380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42074635
transcript_6942.known	chr1	-	8506	36	FSM	ENSMUSG00000026491.14	ENSMUST00000027768.14	8506	36	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_19	31.9958415665383	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGTCAAGTTAATAATTA	NA	False	NA	-1	True	AATAAA	-19	NA	179631245	179572458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_179574094_179574744_179574822_179576121_179576256_179579875_179581638_179583013_179583220_179585499_179585595_179587826_179587927_179590109_179590528_179591034_179591239_179593442_179593636_179595859_179595968_179596553_179596705_179596873_179597025_179598153_179598286_179598363_179598509_179602896_179603085_179603572_179603720_179605067_179605125_179605264_179605389_179607168_179607263_179608420_179608526_179609207_179609349_179610511_179610602_179611654_179611746_179612572_179612702_179613634_179613697_179614259_179614442_179614532_179614666_179615753_179615905_179617213_179617299_179617863_179617981_179619910_179620119_179621207_179621389_179623241_179623496_179626775_179626904_179630917
transcript_69422.known	chr19	+	1939	10	FSM	ENSMUSG00000025178.10	ENSMUST00000235932.2	1939	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	126.842081267405	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGTCCAGTTTCCTT	NA	False	NA	19	True	TTTAAA	-37	NA	42078908	42110470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42103576_42104323_42104458_42104945_42105006_42108231_42108424_42110033
transcript_69424.known	chr19	+	3604	9	FSM	ENSMUSG00000025178.10	ENSMUST00000066778.6	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_8	28.6135348218286	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGACACATTTCTGTGG	NA	False	NA	75	True	GATAAA	-14	NA	42078909	42110526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42103576_42104323_42104458_42104945_42105006_42108231
transcript_69426.known	chr19	+	4267	8	FSM	ENSMUSG00000025178.10	ENSMUST00000235988.2	4267	8	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	29.3445402215868	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGACCTCTCTGTCCAGT	NA	False	NA	13	True	TTTAAA	-31	NA	42078932	42110464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_42079376_42089075_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42104458_42104945_42105006_42108231
transcript_69434.known	chr19	-	1044	3	FSM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	0	0	0	0	multi-exon	FALSE	canonical	3	851	junction_1	12	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCAGAGTGTGCTAC	NA	False	NA	-5	True	AATAAA	-15	NA	42117498	42111711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42112288_42113186_42113466_42117309
transcript_69440.nnic	chr19	+	2770	13	NNC	ENSMUSG00000018820.14	novel	5611	13	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	68.1175454637056	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42158997	42180156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171842_42172004_42172556_42172629_42174058_42174080_42174243_42174389_42177635_42177683_42177960_42178043_42178821
transcript_69441.known	chr19	+	5611	13	FSM	ENSMUSG00000018820.14	ENSMUST00000169536.8	5611	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	59.023300483792	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGGCTGACTTCAGTTTC	NA	False	NA	NA	False	ATTAAA	-11	NA	42159005	42183029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174058_42174080_42174243_42174389_42177635_42177683_42177960_42178043_42178821
transcript_69446.known	chr19	+	2573	12	FSM	ENSMUSG00000018820.14	ENSMUST00000099443.11	2573	12	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	33.3877792261314	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42159032	42180156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_42159108_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
transcript_6945.nic	chr1	-	4821	32	ISM	ENSMUSG00000026491.14	ENSMUST00000027768.14	8506	36	-29	10661	-29	-1856	5prime_fragment	FALSE	canonical	3	225	junction_15	17.1546191253583	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTAAAAGAAGATGAAATAG	NA	False	NA	NA	False	ATTAAA	-1	NA	179631274	179583119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_179583220_179585499_179585595_179587826_179587927_179590109_179590528_179591034_179591239_179593442_179593636_179595859_179595968_179596553_179596705_179596873_179597025_179598153_179598286_179598363_179598509_179602896_179603085_179603572_179603720_179605067_179605125_179605264_179605389_179607168_179607263_179608420_179608526_179609207_179609349_179610511_179610602_179611654_179611746_179612572_179612702_179613634_179613697_179614259_179614442_179614532_179614666_179615753_179615905_179617213_179617299_179617863_179617981_179619910_179620119_179621207_179621389_179623241_179623496_179626775_179626904_179630917
transcript_69467.known	chr19	-	1900	3	FSM	ENSMUSG00000018822.8	ENSMUST00000018966.8	1900	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTATCCAGTAGTTCT	NA	False	NA	2	True	AATAAA	-26	NA	42190691	42186409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42187471_42188219_42188298_42189930
transcript_69472.known	chr19	-	2618	15	FSM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_14	18.8128538342208	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTCTTCCAGCCTCTTTT	NA	False	NA	1	True	GATAAA	-27	NA	42420222	42271473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043_42307201_42312150_42312288_42322314_42322512_42402379_42402583_42420048
transcript_69479.nnic	chr19	-	1349	10	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-19302	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_9	18.8325958557674	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	2389	False	NA	-17	True	AATAAA	-17	NA	42295695	42271970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42295464
transcript_69484.known	chr19	+	4112	7	FSM	ENSMUSG00000025184.11	ENSMUST00000026188.10	4112	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	8.08290376865476	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTACATGTTACCTTAT	NA	False	NA	NA	False	NA	NA	NA	42507197	42580782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_42507297_42550990_42552781_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
transcript_69489.known	chr19	-	2617	15	FSM	ENSMUSG00000025185.15	ENSMUST00000164786.8	2617	15	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_9	2.54750778573243	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACTTGATGCACAGTTC	NA	False	NA	NA	False	NA	NA	NA	42601252	42583544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42583844_42585936_42586049_42586383_42586521_42587139_42587256_42588315_42588560_42590611_42590775_42591625_42591794_42592293_42592449_42592570_42592758_42593245_42593466_42593684_42593724_42595008_42595215_42595992_42596172_42596690_42596987_42601156
transcript_69490.known	chr19	-	3119	16	FSM	ENSMUSG00000060224.5	ENSMUST00000076505.4	3119	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	3.5863940416834	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTCGGTCCAGCCTTGGC	NA	False	NA	NA	False	AATAAA	-18	NA	42741214	42714296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42715429_42716095_42716217_42718060_42718168_42719757_42719913_42722159_42722317_42722521_42722595_42723861_42723997_42724334_42724477_42726527_42726626_42726709_42726772_42728773_42728928_42730946_42731103_42735785_42735860_42735935_42736030_42737822_42737843_42740775
transcript_69497.known	chr19	-	2952	20	FSM	ENSMUSG00000025188.16	ENSMUST00000160455.8	2952	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_12	35.0087444557164	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAAGCCTGTCCCTGGC	NA	False	NA	-5	True	AATAAA	-17	NA	42768415	42743636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755124_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768176
transcript_69498.nic	chr19	-	2765	20	NIC	ENSMUSG00000025188.16	novel	2952	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_12	28.8133740876661	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAAGCCTGTCCCTGGC	NA	False	NA	-5	True	AATAAA	-17	NA	42768404	42743636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755124_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
transcript_69501.nic	chr19	-	2917	20	NIC	ENSMUSG00000025188.16	novel	2952	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_19	27.100714999103	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAAGCCTGTCCCTGGC	NA	False	NA	-5	True	AATAAA	-17	NA	42768404	42743636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768176
transcript_69502.known	chr19	-	2847	20	FSM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_19	17.2102848848348	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTATTTGTGTGTGTACA	NA	False	NA	88	True	NA	NA	NA	42768417	42743543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
transcript_69509.known	chr19	-	4189	19	FSM	ENSMUSG00000025188.16	ENSMUST00000159974.8	4189	19	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_18	17.5390217501039	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAAGCCTGTCCCTGGCCT	NA	False	NA	-3	True	AATAAA	-19	NA	42768398	42743634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42744236_42744696_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
transcript_6951.nic	chr1	-	1276	5	ISM	ENSMUSG00000026491.14	ENSMUST00000027768.14	8506	36	-190	47465	-190	631	5prime_fragment	FALSE	canonical	3	241	junction_1	15.4434452114805	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCATGAAAAGAGAGTAAGTA	NA	False	NA	NA	False	NA	NA	NA	179631435	179619923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_179620119_179621207_179621389_179623241_179623496_179626775_179626904_179630917
transcript_69512.known	chr19	-	3196	18	FSM	ENSMUSG00000025188.16	ENSMUST00000069298.13	3196	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	38.8406379415856	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCACTTGTATTTTATC	NA	False	NA	NA	False	AGTAAA	-13	NA	42768404	42746519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42747747_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755124_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
transcript_69518.known	chr19	-	2647	19	FSM	ENSMUSG00000025188.16	ENSMUST00000026194.15	2647	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	30.4347612337936	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAAGCCTGTCCCTGGCCT	407	False	NA	-3	True	AATAAA	-19	NA	42767086	42743634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766678_42766992
transcript_6952.known	chr1	-	746	2	FSM	ENSMUSG00000026491.14	ENSMUST00000147137.2	746	2	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	179631171	179626411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_179626904_179630917
transcript_69520.known	chr19	+	5037	11	FSM	ENSMUSG00000025189.10	ENSMUST00000165311.3	5037	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	3.04795013082563	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGCTTTGCTTGCCCA	NA	False	NA	NA	False	AATAAA	-44	NA	43428874	43485649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_43430457_43453559_43453704_43456679_43456821_43458047_43458218_43460287_43460388_43460815_43460864_43473283_43473448_43479859_43480044_43480202_43480353_43482148_43482251_43483397
transcript_69523.nnic	chr19	+	5035	11	NNC	ENSMUSG00000025189.10	novel	5037	11	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	3.36005952328229	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGCTTTGCTTGCCCA	NA	False	NA	NA	False	AATAAA	-44	NA	43428851	43485649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_43430457_43453559_43453704_43456679_43456821_43458047_43458218_43460287_43460388_43460815_43460864_43473308_43473448_43479859_43480044_43480202_43480353_43482148_43482251_43483397
transcript_6953.known	chr1	-	4026	15	FSM	ENSMUSG00000026489.14	ENSMUST00000027766.13	4026	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	4.06390281902126	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAGGTCATTTTGTTTT	3865	False	NA	NA	False	AATAAA	-16	NA	180023585	179992802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_179995022_179995886_179995974_179996135_179996202_179996337_179996446_179996644_179996787_179996980_179997075_179997197_179997280_179997626_179997768_179997907_179997994_179999128_179999252_180001815_180001891_180006141_180006209_180006447_180006850_180009626_180009813_180023437
transcript_69531.known	chr19	-	2058	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	2008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8317	False	NA	-3	True	NA	NA	NA	43513044	43488190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
transcript_69542.known	chr19	-	720	3	FSM	ENSMUSG00000025190.14	ENSMUST00000124954.2	720	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	416.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGAGAGTATTTTGCT	8437	False	NA	NA	False	AATGAA	-22	NA	43512924	43500692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_43501083_43504119_43504302_43512776
transcript_69544.known	chr19	-	1535	4	FSM	ENSMUSG00000040414.9	ENSMUST00000046038.9	1535	4	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_2	77.3146529162199	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTGGGTTTGTCTT	NA	False	NA	-3	True	ATTAAA	-19	NA	43663320	43652239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_43653083_43654210_43654268_43655353_43655583_43662914
transcript_69545.nic	chr19	-	2667	3	NIC	ENSMUSG00000040414.9	novel	1535	4	NA	NA	-46	0	intron_retention	FALSE	canonical	3	293	junction_1	1	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTGGGTTTGTCTT	NA	False	NA	-3	True	ATTAAA	-19	NA	43663366	43652239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_43653083_43654210_43655583_43662914
transcript_69546.known	chr19	-	3724	2	FSM	ENSMUSG00000040414.9	ENSMUST00000235953.2	3724	2	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACGCTGTGTTGGGTTTG	NA	False	NA	-7	True	ATTAAA	-15	NA	43663299	43652243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_43655583_43662914
transcript_69547.known	chr19	+	5911	13	FSM	ENSMUSG00000025192.14	ENSMUST00000081079.6	5911	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	3.63623737154524	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAATTATTGCTCAT	2639	False	NA	NA	False	AATAAA	-20	NA	43678110	43722136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_43678344_43678617_43678721_43679456_43679640_43692637_43692844_43693318_43693470_43700173_43700278_43704712_43704770_43705888_43706023_43710187_43710355_43713652_43713978_43715281_43715368_43716428_43716591_43718136
transcript_6955.known	chr1	-	1997	11	FSM	ENSMUSG00000010609.16	ENSMUST00000111108.10	1997	11	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_10	6.79411510058521	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTGTTTGGCCCCTTT	NA	False	NA	2	True	AATAAA	-19	NA	180083865	180054568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_180055294_180056407_180056527_180056950_180057053_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178_180073323_180083787
transcript_69553.known	chr19	+	1829	9	FSM	ENSMUSG00000025192.14	ENSMUST00000144314.2	1829	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.11247489949718	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATAAACAATGGTTATT	2807	False	NA	NA	False	ATTAAA	-33	NA	43678278	43711013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_43678344_43678617_43678721_43679456_43679640_43692637_43692844_43693318_43693470_43700173_43700278_43704712_43704770_43705888_43706023_43710187
transcript_69554.known	chr19	+	1233	9	FSM	ENSMUSG00000025193.15	ENSMUST00000112047.10	1233	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	5.45435605731786	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGTCTCAGGTTCTTTC	9274	False	NA	16	True	AATAAA	-19	NA	43741536	43757077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
transcript_69555.known	chr19	+	1298	9	FSM	ENSMUSG00000025193.15	ENSMUST00000026199.14	1298	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	8.4400459121974	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGTTATAGTCTCAGG	9172	False	NA	9	True	AATAAA	-12	NA	43741434	43757070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751341_43751446_43753398_43753427_43755639_43755746_43756613
transcript_69560.known	chr19	-	4798	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTTGAACATACTAAT	NA	False	NA	NA	False	NA	NA	NA	43741439	43721692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
transcript_69564.nnic	chr19	-	2724	8	NIC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	19	-1868	combination_of_known_splicesites	FALSE	canonical	3	8	junction_5	140.673743253019	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCAGTCAGCTAACCC	NA	False	NA	-16	True	AATAAA	-16	NA	43741420	43723560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43737228_43737352_43739782_43739974_43741260
transcript_69569.known	chr19	-	3901	14	FSM	ENSMUSG00000025195.10	ENSMUST00000212592.2	3901	14	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_13	13.2052526755398	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	NA	False	NA	-6	True	AATAAA	-14	NA	43868207	43835260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43868051
transcript_69570.known	chr19	-	4186	14	FSM	ENSMUSG00000025195.10	ENSMUST00000212048.2	4186	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_13	12.8730717519697	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCACTCCATGGTCGACTG	657	False	NA	NA	False	NA	NA	NA	43879130	43836201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43877748
transcript_69573.known	chr19	-	1828	9	FSM	ENSMUSG00000025196.5	ENSMUST00000026210.5	1828	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	10.3191266587827	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCCACTTGCATGCCT	5862	False	NA	3	True	ATTAAA	-22	NA	43974995	43944745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43969241_43969439_43974504
transcript_69577.known	chr19	-	1916	9	FSM	ENSMUSG00000025197.10	ENSMUST00000026211.10	1916	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	4.84606799374503	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTTGTATGTTTGACT	4131	False	NA	NA	False	AATAAA	-18	NA	44017638	43993460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_43994062_43995462_43995605_44000721_44000910_44002014_44002157_44003342_44003520_44004104_44004266_44005174_44005325_44010000_44010164_44017446
transcript_69579.known	chr19	-	3228	12	FSM	ENSMUSG00000025198.17	ENSMUST00000071698.13	3228	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_11	39.5783562189201	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058214	44023382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
transcript_69580.known	chr19	-	3136	12	FSM	ENSMUSG00000025198.17	ENSMUST00000112028.10	3136	12	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_11	27.8217466521579	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058224	44023382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
transcript_69585.known	chr19	-	3172	11	FSM	ENSMUSG00000025198.17	ENSMUST00000170801.8	3172	11	0	0	0	0	multi-exon	TRUE	canonical	3	157	junction_6	17.066048165876	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44057965	44023382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710
transcript_69586.known	chr19	-	2083	2	FSM	ENSMUSG00000025198.17	ENSMUST00000170577.2	2083	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	44058183	44054510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44056121_44057710
transcript_69588.known	chr19	-	3502	21	FSM	ENSMUSG00000025199.17	ENSMUST00000026217.11	3502	21	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_2	31.5901883501824	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAATCTCTACTCATTT	NA	False	NA	-1	True	ATTAAA	-15	NA	44095919	44061773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
transcript_69593.known	chr19	-	3481	21	FSM	ENSMUSG00000025199.17	ENSMUST00000119591.2	3481	21	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	45.2515193115104	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAATCTCTACTCATT	NA	False	NA	-2	True	ATTAAA	-14	NA	44095916	44061774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44062980_44063869_44063970_44065701_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
transcript_69599.known	chr19	-	2337	16	FSM	ENSMUSG00000025199.17	ENSMUST00000147423.8	2337	16	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_3	19.8510005345379	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCCAACAAAAGGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	44095908	44069853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
transcript_6960.known	chr1	+	6235	8	FSM	ENSMUSG00000038855.11	ENSMUST00000070181.7	6235	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.77010277566647	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTGATGTGATCCTTC	NA	False	NA	NA	False	AATAAA	-17	NA	180158049	180252367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180158345_180159676_180161796_180240238_180240339_180241351_180241566_180245718_180245924_180247822_180247925_180248839_180248912_180249239
transcript_69609.known	chr19	-	3581	14	FSM	ENSMUSG00000025200.8	ENSMUST00000026218.7	3581	14	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_12	11.4813973542901	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCACTGTAGAAACCAG	NA	False	NA	NA	False	AAAAAG	-2	NA	44124315	44097075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44124204
transcript_69614.nic	chr19	-	2191	14	NIC	ENSMUSG00000025200.8	novel	3581	14	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_9	40.9509737188349	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGATGTCTTATGTTGCT	NA	False	NA	-3	True	AATAGA	-24	NA	44124337	44098459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117664_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44124204
transcript_69627.known	chr19	-	885	5	FSM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	1199	junction_4	51.0165414351071	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAACAAATGTGGGT	963	False	NA	NA	False	ATTAAA	-5	NA	44134885	44127697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379_44134497_44134797
transcript_69630.nic	chr19	-	821	3	ISM	ENSMUSG00000057506.6	ENSMUST00000237867.2	683	5	-67	817	-20	-817	5prime_fragment	FALSE	canonical	3	1199	junction_2	45	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTAATTTAATTTAGAGTG	943	False	NA	NA	False	NA	NA	NA	44134905	44130983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_44131580_44134379_44134497_44134797
transcript_69631.known	chr19	-	3321	15	FSM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	23.366206192635	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTTGCATTTCCTTCTG	NA	False	NA	-1	True	AATAAA	-17	NA	44180881	44136075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142219_44142502_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490_44145745_44146075_44146204_44179859_44179974_44180478
transcript_69632.known	chr19	+	655	3	FSM	ENSMUSG00000025202.9	ENSMUST00000237324.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	4	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGCAGAAATTCTCCTGT	NA	False	NA	7	True	ATTAAA	-25	NA	44226253	44230457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44226317_44226814_44227048_44230098
transcript_69637.known	chr19	+	5455	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	0	0	0	0	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	1576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1067	False	NA	22	True	AATAAA	-23	NA	44282112	44295303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
transcript_69643.known	chr19	+	2166	6	FSM	ENSMUSG00000025203.7	ENSMUST00000237039.2	2166	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1062.75159844622	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATAAGGATTTTCTTTTC	1469	False	NA	NA	False	AGTAAA	-31	NA	44282514	44292417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288263_44289660_44289884_44291439
transcript_69645.nnic	chr19	-	5026	7	NNC	ENSMUSG00000037071.4	novel	4832	6	NA	NA	-2813	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_6	245.996217224755	122	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	9639	False	NA	-5	True	AATAAA	-22	NA	44399131	44382893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824_44396018_44398806
transcript_69647.known	chr19	-	4832	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	-4	True	NA	-5	True	AATAAA	-22	NA	44396148	44382893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
transcript_69651.known	chr19	-	3939	26	FSM	ENSMUSG00000051984.14	ENSMUST00000063632.14	3939	26	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_23	5.22302594288024	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTCTGCCACGACAT	NA	False	NA	NA	False	AGTAAA	-19	NA	44534303	44505395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44505928_44506078_44506151_44506582_44506700_44506956_44507104_44507339_44507399_44507611_44507927_44508861_44509022_44511443_44511606_44512098_44512273_44512867_44513014_44513559_44513687_44513914_44514094_44514654_44514755_44515043_44515143_44515436_44515512_44517104_44517336_44520119_44520210_44520732_44520895_44521032_44521133_44522679_44522823_44523126_44523271_44524143_44524240_44524496_44524693_44531704_44531829_44532139_44532252_44534226
transcript_69654.known	chr19	-	3548	25	FSM	ENSMUSG00000051984.14	ENSMUST00000111985.2	3548	25	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_17	4.98051759916131	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTTCCCTTGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	44534286	44505645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44505928_44506078_44506151_44506582_44506700_44506956_44507104_44507339_44507399_44507611_44507927_44508861_44509022_44511443_44511606_44512098_44512273_44512867_44513014_44513559_44513687_44513914_44514094_44514654_44514755_44515043_44515143_44515436_44515512_44517104_44517336_44520119_44520210_44520732_44520895_44521032_44521133_44522679_44522823_44523126_44523271_44524143_44524240_44524496_44524693_44532139_44532252_44534226
transcript_69663.known	chr19	-	2142	5	FSM	ENSMUSG00000025204.11	ENSMUST00000171415.8	2142	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2269.24749366392	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTTCTGGATTTTGTAA	1988	False	NA	NA	False	AATAAA	-16	NA	44543865	44537010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44538660_44541136_44541293_44542107_44542208_44543369_44543497_44543755
transcript_69666.known	chr19	-	603	5	FSM	ENSMUSG00000025204.11	ENSMUST00000168083.2	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	2211.89753096747	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCTCTGGTTTCTGTGT	1995	False	NA	-20	True	AATAAA	-16	NA	44543858	44538691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543454_44543755
transcript_69668.known	chr19	-	680	5	FSM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	502.944517317765	2241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTCTTTCTCCAGG	1974	False	NA	-7	True	AATAAA	-29	NA	44543879	44538678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543497_44543755
transcript_69671.known	chr19	-	710	3	FSM	ENSMUSG00000025204.11	ENSMUST00000169181.2	710	3	0	0	0	0	multi-exon	FALSE	canonical	3	4735	junction_2	515	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGATCAAAAAGCAAGTTG	2009	False	NA	NA	False	NA	NA	NA	44543844	44541713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44542208_44543369_44543497_44543755
transcript_69672.known	chr19	-	341	2	FSM	ENSMUSG00000025204.11	ENSMUST00000164543.2	341	2	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGCTCTGGTTTCTGT	4534	False	NA	-22	True	AATAAA	-14	NA	44541319	44538693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_44538852_44541136
transcript_69673.known	chr19	+	6194	8	FSM	ENSMUSG00000036450.5	ENSMUST00000040455.5	6194	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	13.1583759310508	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATGTGACTTATTTAAA	NA	False	NA	11	True	NA	NA	NA	44551288	44564713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44551494_44551728_44551980_44554316_44554466_44556773_44556920_44557842_44557950_44558331_44558396_44558665_44558777_44559552
transcript_69678.known	chr19	+	868	2	FSM	ENSMUSG00000036450.5	ENSMUST00000131032.2	868	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTGTG	NA	False	NA	NA	False	NA	NA	NA	44551288	44552391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44551494_44551728
transcript_69681.known	chr19	+	6249	20	FSM	ENSMUSG00000036097.9	ENSMUST00000096053.5	6249	20	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_11	22.2601092848611	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTGTCACCTTTCAGAA	1043	False	NA	-7	True	NA	NA	NA	44919589	44971627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44919890_44922550_44922595_44923371_44924106_44926803_44926859_44929897_44930866_44931887_44931959_44936368_44936492_44937410_44937579_44940507_44940611_44947443_44947520_44949172_44949315_44955405_44955509_44955941_44956119_44957475_44957574_44960036_44960125_44961572_44961705_44962046_44962125_44964067_44964155_44967599_44967669_44968994
transcript_69689.nic	chr19	+	1243	5	ISM	ENSMUSG00000036097.9	ENSMUST00000236895.2	6180	20	-30	41068	-21	9493	5prime_fragment	FALSE	canonical	3	167	junction_3	11.4345966260293	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAGAGTCCTTTCTAGA	1022	False	NA	NA	False	NA	NA	NA	44919568	44929986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_44919890_44922550_44922595_44923371_44924106_44926803_44926859_44929897
transcript_69692.nic	chr19	+	475	3	ISM	ENSMUSG00000036097.9	ENSMUST00000236895.2	6180	20	-30	47573	-21	2988	5prime_fragment	FALSE	canonical	3	181	junction_1	9	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAACCTAAGAGGATGTC	1022	False	NA	NA	False	NA	NA	NA	44919568	44923481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_44919890_44922550_44922595_44923371
transcript_69694.known	chr19	+	892	1	FSM	ENSMUSG00000036097.9	ENSMUST00000236356.2	892	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAACTTGGTACTGTCTTT	1055	False	NA	NA	False	AATAAA	-16	NA	44919601	44920493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44919600_44920500
transcript_69697.known	chr19	+	4548	15	FSM	ENSMUSG00000025207.17	ENSMUST00000026225.15	4548	15	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_7	2.98037800643215	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGAGTGTCTGCTTGGT	NA	False	NA	4	True	AATAAA	-18	NA	44977539	44991836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44977797_44980576_44981078_44981172_44981322_44981558_44981622_44984907_44985007_44985118_44985213_44985358_44985473_44985730_44985895_44985967_44986138_44986402_44986548_44986670_44986894_44987109_44987226_44987316_44987478_44987617_44987680_44989606
transcript_69699.known	chr19	+	2195	5	FSM	ENSMUSG00000025209.6	ENSMUST00000236685.2	2195	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	67.8122407829147	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGCGTTTTTTCTTA	1658	False	NA	26	True	AATGAA	-19	NA	44994101	45001201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44994627_44997718_44997960_44998570_44998679_44998856_44998999_45000022
transcript_69700.known	chr19	+	3488	5	FSM	ENSMUSG00000025209.6	ENSMUST00000026227.3	3488	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	30.3593066455741	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGCGTTTTTTCTTA	2553	False	NA	26	True	AATGAA	-19	NA	44994996	45001201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_44996815_44997718_44997960_44998570_44998679_44998856_44998999_45000022
transcript_69720.nnic	chr19	+	2766	5	NNC	ENSMUSG00000035342.15	novel	398	3	NA	NA	344	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	64.1443684199946	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTGACATCCATCT	2120	False	NA	NA	False	GATAAA	-14	NA	45004171	45015541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_45004263_45009825_45010276_45011980_45012644_45013157_45013419_45014240
transcript_69723.known	chr19	+	2694	5	FSM	ENSMUSG00000035342.15	ENSMUST00000178087.3	2694	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	34.0954542424646	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTGACATCCATCT	5	True	NA	NA	False	GATAAA	-14	NA	45006650	45015541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_45006670_45009825_45010276_45011980_45012644_45013157_45013419_45014240
transcript_69725.nnic	chr19	+	2618	5	NNC	ENSMUSG00000035342.15	novel	2694	5	NA	NA	-87	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	59.4784624885345	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTGACATCCATCT	8	True	NA	NA	False	GATAAA	-14	NA	45006507	45015541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_45006670_45010044_45010276_45011980_45012644_45013157_45013419_45014240
transcript_69732.known	chr19	+	2798	5	FSM	ENSMUSG00000035342.15	ENSMUST00000179108.9	2798	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	54.407605166925	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATCCATCTCTGCTTGCT	1587	False	NA	NA	False	GATAAA	-23	NA	45003638	45015550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_45003753_45009825_45010276_45011980_45012644_45013157_45013419_45014240
transcript_69733.known	chr19	+	3062	5	FSM	ENSMUSG00000035342.15	ENSMUST00000039016.14	3062	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	41.4517792139252	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATTTAAAAAAAAAA	1252	False	NA	NA	False	NA	NA	NA	45003303	45015469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_45003763_45009825_45010276_45011980_45012644_45013157_45013419_45014240
transcript_69734.known	chr19	+	2867	11	FSM	ENSMUSG00000025212.18	ENSMUST00000062213.13	2867	11	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_2	13.7767920794356	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTTCAGTTATTCC	NA	False	NA	7	True	AATAAA	-18	NA	45036112	45044821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_45036330_45037542_45037707_45038182_45038354_45038666_45038766_45039088_45039165_45039314_45039401_45040534_45040663_45040849_45040900_45042108_45042159_45042740_45042789_45043043
transcript_69739.nnic	chr19	-	2555	3	NNC	ENSMUSG00000025216.10	novel	2484	2	NA	NA	-1060	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACCGCGATCGCATTTGC	NA	False	NA	NA	False	AATAAA	-22	NA	45225311	45221122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_45222697_45223341_45224081_45225069
transcript_69741.nic	chr19	+	2339	16	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	157	junction_2	153.826684580046	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	17	True	TATAAA	-19	NA	45352150	45517732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_45352326_45394983_45395026_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_69744.known	chr19	+	2978	15	FSM	ENSMUSG00000025217.16	ENSMUST00000065601.13	2978	15	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	116.411041625118	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGCTCTGTGGCTCGAA	NA	False	NA	NA	False	NA	NA	NA	45352189	45518452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_69749.known	chr19	+	2064	14	FSM	ENSMUSG00000025217.16	ENSMUST00000111936.4	2064	14	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	132.758623339525	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGAATCTCTCTTGCTT	NA	False	NA	13	True	TATAAA	-15	NA	45352271	45517728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_45352326_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_69758.nnic	chr19	-	2644	9	NNC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	20.4435197556585	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45549001	45540713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_45541610_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548635
transcript_69759.known	chr19	-	2324	9	FSM	ENSMUSG00000025218.7	ENSMUST00000026239.7	2324	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	11.9973955507018	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45548970	45540713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_45541610_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
transcript_69761.nnic	chr19	-	2527	9	NNC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	-53	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	20.2113829314077	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTGCTGTCTGTGA	NA	False	NA	-1	True	AATAAA	-16	NA	45549023	45540716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_45541763_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
transcript_69766.nic	chr19	-	3079	8	NIC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	-53	0	intron_retention	FALSE	canonical	3	33	junction_7	12.7775312999988	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45549023	45540713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_45541610_45541947_45542117_45543529_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
transcript_69769.nic	chr19	-	2715	8	NIC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	-53	0	intron_retention	FALSE	canonical	3	33	junction_7	11.0176111340908	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45549023	45540713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
transcript_69771.nic	chr19	-	3417	7	NIC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	-53	0	intron_retention	FALSE	canonical	3	33	junction_6	11.8988794990677	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45549023	45540713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_45542117_45543529_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
transcript_69774.nic	chr19	-	2225	9	NIC	ENSMUSG00000040913.12	novel	2068	9	NA	NA	-212	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	23.8275051148877	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTTTGGTGGTTAG	NA	False	NA	-5	True	AATAAA	-18	NA	45648963	45566692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_45567365_45567559_45567647_45568091_45568233_45580167_45580234_45619303_45619399_45624173_45624307_45624701_45624888_45628864_45628961_45648214
transcript_69778.known	chr19	-	2068	9	FSM	ENSMUSG00000040913.12	ENSMUST00000046869.11	2068	9	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_8	9.07520660921833	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTTTGGTGGTTAG	NA	False	NA	-5	True	AATAAA	-18	NA	45648751	45566692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_45567365_45567559_45567702_45568091_45568233_45580167_45580234_45619303_45619399_45624173_45624307_45624701_45624888_45628864_45628961_45648214
transcript_69781.known	chr19	+	687	7	FSM	ENSMUSG00000041035.10	ENSMUST00000235805.2	687	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	211.143447815829	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCAGTGCTGGGGACTGT	3712	False	NA	NA	False	NA	NA	NA	45549073	45565982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_45549147_45549425_45549524_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
transcript_69782.known	chr19	+	1353	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATGGTAGCATGTTTCC	3692	False	NA	NA	False	ATTAAA	-19	NA	45549053	45566726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
transcript_69783.known	chr19	-	843	5	FSM	ENSMUSG00000025219.14	ENSMUST00000111927.8	843	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGCACAGCAAAGGGGAGG	NA	False	NA	NA	False	NA	NA	NA	45731297	45725374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_45725720_45726556_45726664_45729937_45730086_45730954_45730992_45731091
transcript_69784.known	chr19	-	1056	5	FSM	ENSMUSG00000025219.14	ENSMUST00000111928.8	1056	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.11803398874989	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTGTATTCCACTGGC	NA	False	NA	NA	False	NA	NA	NA	45731354	45725251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_45725720_45726556_45726664_45729937_45730119_45730954_45730992_45731091
transcript_69792.known	chr19	-	5057	16	FSM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_7	84.8678973464054	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTGTGCTGCTTTTT	5476	False	NA	-12	True	AATAAA	-13	NA	45771990	45738697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470_45767523_45771370
transcript_69801.nic	chr19	-	2241	9	ISM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	-23	17147	-23	437	5prime_fragment	FALSE	canonical	3	667	junction_8	64.544074088951	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTCAGAAAAAGTAAGTGC	5453	False	NA	-4	True	NA	NA	NA	45772013	45755844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470_45767523_45771370
transcript_69803.nic	chr19	-	1978	9	ISM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	-141	17528	84	56	5prime_fragment	FALSE	canonical	3	667	junction_8	64.544074088951	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGCAGAGCACAAGAA	5335	False	NA	60	True	AAGAAA	-43	NA	45772131	45756225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470_45767523_45771370
transcript_6981.known	chr1	+	3873	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	3840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3147	False	NA	10	True	ATTAAA	-18	NA	180396493	180428819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
transcript_69812.known	chr19	-	888	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	1540	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	4887	False	NA	0	True	AATAAA	-27	NA	45738030	45736172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
transcript_69824.known	chr19	-	1005	8	FSM	ENSMUSG00000025221.17	ENSMUST00000086993.11	1005	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	6.66394502268034	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGAGACCACACTAGACG	NA	False	NA	NA	False	NA	NA	NA	45800730	45781787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45800636
transcript_69825.nic	chr19	-	2320	7	ISM	ENSMUSG00000025221.17	ENSMUST00000239049.2	2113	8	7464	0	-406	0	3prime_fragment	TRUE	canonical	3	16	junction_1	4.2687494916219	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTCTCTGCCTCTTTAT	NA	False	NA	0	True	AATAAA	-21	NA	45784549	45780784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018
transcript_69834.nnic	chr19	-	3821	26	NNC	ENSMUSG00000039901.11	novel	3676	26	NA	NA	4892	0	at_least_one_novel_splicesite	TRUE	canonical	3	28	junction_25	35.5729335309867	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGTCTCGTTAGTGTC	NA	False	NA	-3	True	ATTAAA	-17	NA	45982035	45805802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45981817
transcript_69835.known	chr19	-	3676	26	FSM	ENSMUSG00000039901.11	ENSMUST00000045396.9	3676	26	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_20	17.3221707646588	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGTCTCGTTAGTGTC	6647	False	NA	-3	True	ATTAAA	-17	NA	45986927	45805802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
transcript_69837.nnic	chr19	-	3306	26	NNC	ENSMUSG00000039901.11	novel	3676	26	NA	NA	4623	-784	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_25	35.5729335309867	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGCCCTCAAGGTGCCTA	NA	False	NA	-10	True	AATAAA	-16	NA	45982304	45806586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45981817
transcript_69851.known	chr19	+	2666	1	FSM	ENSMUSG00000074811.4	ENSMUST00000099393.4	2666	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	279	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCGTGTTAAGTTTTG	NA	False	NA	25	True	AATATA	-14	NA	45991946	45994612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_45991900_45994600
transcript_69857.known	chr19	+	5205	14	FSM	ENSMUSG00000055491.15	ENSMUST00000062322.11	5205	14	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_2	120.971168749579	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCCAGCGTGTCCTTTC	NA	False	NA	3	True	AATAAA	-15	NA	46045022	46061348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46045183_46049841_46050016_46050579_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
transcript_69859.known	chr19	+	5246	14	FSM	ENSMUSG00000055491.15	ENSMUST00000111899.8	5246	14	0	0	0	0	multi-exon	TRUE	canonical	3	236	junction_7	80.0611452719015	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCAGCGTGTCCTTTCTG	NA	False	NA	5	True	AATAAA	-17	NA	46044977	46061350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
transcript_69877.known	chr19	-	2295	11	FSM	ENSMUSG00000025223.16	ENSMUST00000056931.14	2295	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_10	244.379806858095	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTCATGTTCCCCTAT	8088	False	NA	-31	True	ATTAAA	-20	NA	46028060	46021032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46027493
transcript_69879.known	chr19	-	1718	11	FSM	ENSMUSG00000025223.16	ENSMUST00000026252.14	1718	11	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	132.738992010637	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGGTAAAATTCTGGGC	7018	False	NA	-126	True	GGGGCT	-35	NA	46033353	46021127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
transcript_69881.known	chr19	-	2014	10	FSM	ENSMUSG00000025223.16	ENSMUST00000137771.2	2014	10	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_9	235.530344562811	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGGGCTCCGGGGATAT	8228	False	NA	NA	False	TTTAAA	-25	NA	46027920	46021863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46027493
transcript_69883.nic	chr19	-	3131	10	NIC	ENSMUSG00000025223.16	novel	2108	11	NA	NA	-327	0	intron_retention	TRUE	canonical	3	657	junction_1	53.8023359904074	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCATGTTCCCCTATT	6391	False	NA	-30	True	ATTAAA	-21	NA	46033980	46021031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
transcript_69898.known	chr19	+	2398	13	FSM	ENSMUSG00000015176.12	ENSMUST00000223683.2	2398	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	313.587042674491	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTTGTGATTTTCAG	47	False	NA	14	True	ATTAAA	-14	NA	46064470	46072900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
transcript_699.nic	chr1	-	2928	6	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	-336	18846	4	-127	5prime_fragment	FALSE	canonical	3	122	junction_4	10.4230513766363	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCAAAGGAATCTACAGCT	NA	False	NA	NA	False	AAAAAG	-9	NA	30912998	30860265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_30860396_30863290_30863601_30868923_30870641_30876185_30876348_30902067_30902337_30912658
transcript_69905.known	chr19	+	3523	13	FSM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	265.145819419344	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCAGAGTTATGTCGT	244	False	NA	13	True	AATAAA	-16	NA	46064408	46073969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
transcript_69925.nic	chr19	+	1823	10	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-58	-129	combination_of_known_junctions	FALSE	canonical	3	438	junction_4	158.570309988587	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCCAAAGCTACTACCC	79	False	NA	-68	True	NA	NA	NA	46064243	46071653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178
transcript_69926.nic	chr19	+	1887	10	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	438	junction_4	158.570309988587	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCTGGGACCAAGCCAG	144	False	NA	61	True	NA	NA	NA	46064308	46071782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178
transcript_69928.nic	chr19	+	1688	10	ISM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	-33	2316	-4	-129	5prime_fragment	FALSE	canonical	3	421	junction_4	162.914277239274	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCCAAAGCTACTACCC	211	False	NA	-68	True	NA	NA	NA	46064375	46071653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178
transcript_69929.nic	chr19	+	1949	10	ISM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	-165	2187	-58	0	5prime_fragment	FALSE	canonical	3	421	junction_4	162.914277239274	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCTGGGACCAAGCCAG	79	False	NA	61	True	NA	NA	NA	46064243	46071782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178
transcript_69933.known	chr19	+	1854	9	FSM	ENSMUSG00000015176.12	ENSMUST00000225758.2	1854	9	0	0	0	0	multi-exon	FALSE	canonical	3	421	junction_4	172.794675843904	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCTGGGACCAAGCCAG	28	False	NA	61	True	NA	NA	NA	46064451	46071782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954
transcript_69947.nic	chr19	+	644	4	ISM	ENSMUSG00000015176.12	ENSMUST00000225758.2	1854	9	-208	4116	-58	0	5prime_fragment	FALSE	canonical	3	745	junction_2	130.386604628952	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAGAGGACAAAAAGAAAA	79	False	NA	NA	False	NA	NA	NA	46064243	46067666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569
transcript_69948.known	chr19	-	1380	4	FSM	ENSMUSG00000025229.16	ENSMUST00000026259.16	1380	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	2.62466929133727	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGATGATTCAGACTTG	NA	False	NA	NA	False	AATAAA	-19	NA	46136765	46124123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46125045_46125421_46125625_46125803_46125934_46136639
transcript_69950.known	chr19	+	6450	40	FSM	ENSMUSG00000025224.17	ENSMUST00000026254.14	6450	40	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_33	16.0207377114128	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTCCCGCTGATTTTC	9051	False	NA	19	True	AATAAA	-19	NA	46140947	46274949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46141232_46151958_46152065_46159095_46159163_46234527_46234660_46240552_46240672_46242425_46242535_46242995_46243057_46244091_46244147_46247542_46247691_46248011_46248236_46249151_46249318_46250059_46250272_46250872_46250972_46253217_46253413_46253616_46253807_46254025_46254167_46254463_46254553_46255641_46255845_46256431_46256556_46256829_46256956_46257217_46257301_46258183_46258421_46258696_46258791_46259112_46259290_46259993_46260059_46260145_46260270_46260424_46260497_46260613_46260709_46260939_46261094_46267648_46267875_46268350_46268512_46268615_46268863_46268976_46269183_46271473_46271625_46271758_46271890_46272060_46272163_46272443_46272558_46272688_46272870_46273143_46273273_46274098
transcript_69958.known	chr19	+	2979	23	FSM	ENSMUSG00000025225.16	ENSMUST00000073116.13	2979	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_13	7.7085334275273	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAACCCCAATGTGCTG	NA	False	NA	23	True	AATAAA	-28	NA	46293182	46300461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46293260_46294368_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
transcript_69960.known	chr19	+	3846	22	FSM	ENSMUSG00000025225.16	ENSMUST00000237330.2	3846	22	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_13	7.88983099353693	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	46292758	46300824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46293260_46294368_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019
transcript_69965.known	chr19	+	3141	22	FSM	ENSMUSG00000025225.16	ENSMUST00000111881.4	3141	22	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_12	7.7415743094745	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCAATGTGCTGCCCAT	NA	False	NA	28	True	AATAAA	-33	NA	46294134	46300466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
transcript_69975.known	chr19	-	1764	2	FSM	ENSMUSG00000118087.2	ENSMUST00000235942.2	1764	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGAAAATGACATTTCG	NA	False	NA	NA	False	AATAAA	-17	NA	46294050	46292029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46293290_46293546
transcript_69976.known	chr19	-	2034	8	FSM	ENSMUSG00000037126.17	ENSMUST00000224556.2	2034	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.728431359084683	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGGGCCTCCTCCTCTA	5847	False	NA	-2	True	ATTAAA	-16	NA	46306530	46300525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46301369_46301740_46301885_46302092_46302238_46302614_46302773_46302901_46302973_46303051_46303243_46304471_46304516_46306092
transcript_69977.nic	chr19	-	1155	10	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_9	349.700542086801	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5817	False	NA	-2	True	AGTAAA	-19	NA	46327104	46318978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
transcript_69978.nnic	chr19	-	1225	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	349.486642921081	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5805	False	NA	-2	True	AGTAAA	-19	NA	46327116	46318978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
transcript_69979.nic	chr19	-	1234	10	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_9	356.842566524722	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5806	False	NA	-2	True	AGTAAA	-19	NA	46327115	46318978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46326958
transcript_69983.known	chr19	-	1164	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_9	336.647010794011	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5858	False	NA	-6	True	AGTAAA	-15	NA	46327063	46318982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
transcript_69984.nnic	chr19	-	1279	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	336.420298561116	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5805	False	NA	-2	True	AGTAAA	-19	NA	46327116	46318978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
transcript_69985.nic	chr19	-	1288	10	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_9	344.205723727706	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5806	False	NA	-2	True	AGTAAA	-19	NA	46327115	46318978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46326958
transcript_69987.known	chr19	-	999	9	FSM	ENSMUSG00000036748.17	ENSMUST00000236980.2	999	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_8	339.490035752156	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
transcript_69988.known	chr19	-	1050	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	355.205486303351	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5844	False	NA	-2	True	AGTAAA	-19	NA	46327077	46318978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46327007
transcript_69990.known	chr19	-	1790	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235485.2	1790	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_8	321.93700859019	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGGCTCCCAAGTCTG	5862	False	NA	NA	False	NA	NA	NA	46327059	46318250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46327007
transcript_69993.known	chr19	+	1243	5	FSM	ENSMUSG00000025226.12	ENSMUST00000177667.2	1243	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.8004237212059	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGTGGTGCATAGGGGA	6316	False	NA	8	True	AATAAA	-17	NA	46316625	46318884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46316741_46316841_46316966_46317113_46317268_46317526_46318033_46318540
transcript_69996.known	chr19	+	1348	4	FSM	ENSMUSG00000025226.12	ENSMUST00000026256.9	1348	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.08248290463863	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGGTGCATAGGGGAC	6313	False	NA	9	True	AATAAA	-18	NA	46316622	46318885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46316966_46317113_46317268_46317526_46318033_46318540
transcript_7.known	ERCC-00019	+	627	1	FSM	ERCC-00019A	DQ883651	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00019_+_0_600
transcript_70.known	SIRV1	-	1300	4	FSM	SIRV1A	SIRV102	1300	4	0	0	0	0	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	10366	1006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
transcript_70002.nnic	chr19	+	2460	10	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6896622735489	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4207	False	NA	13	True	AGTAAA	-13	NA	46345327	46363691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_46345424_46350784_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
transcript_70013.known	chr19	+	2278	9	FSM	ENSMUSG00000025227.15	ENSMUST00000086969.13	2278	9	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	30.2561977122044	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4198	False	NA	13	True	AGTAAA	-13	NA	46345318	46363691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
transcript_70023.known	chr19	+	2051	8	FSM	ENSMUSG00000025227.15	ENSMUST00000142994.8	2051	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	80.873294701764	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4253	False	NA	13	True	AGTAAA	-13	NA	46345373	46363691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360620_46360815_46362884
transcript_70033.known	chr19	-	2757	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGACCTCTTTCTGT	NA	False	NA	-2	True	AATAAA	-19	NA	46384186	46365249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
transcript_70041.known	chr19	-	1076	5	FSM	ENSMUSG00000025228.6	ENSMUST00000236117.2	1076	5	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_3	19.765816451642	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCCCCAGCACCTTCCC	NA	False	NA	NA	False	NA	NA	NA	46384187	46370167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
transcript_70042.known	chr19	+	1747	12	FSM	ENSMUSG00000025231.18	ENSMUST00000111867.9	1747	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	20.0218888484042	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATGACTGCAGAGTGCCA	NA	False	NA	NA	False	AATAAA	-13	NA	46385356	46474487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441597_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293
transcript_70044.known	chr19	+	4522	12	FSM	ENSMUSG00000025231.18	ENSMUST00000039922.13	4522	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_6	14.4473967456865	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTGTGCTTCTTTCT	NA	False	NA	19	True	ATTAAA	-19	NA	46385334	46477243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293
transcript_70048.known	chr19	+	2681	10	FSM	ENSMUSG00000025231.18	ENSMUST00000118440.3	2681	10	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_6	13.1101694577102	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCGTCTGTGTGGTGTT	NA	False	NA	NA	False	TATAAA	-32	NA	46385464	46465393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600_46441755_46443173_46443286_46462010_46462146_46463946
transcript_70049.nic	chr19	+	1867	7	ISM	ENSMUSG00000025231.18	ENSMUST00000111867.9	1747	12	-41	32005	-19	0	5prime_fragment	FALSE	canonical	3	32	junction_6	24.709422404329	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGACTTGGTTTACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	46385315	46442482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441597
transcript_70050.nic	chr19	+	1856	7	ISM	ENSMUSG00000025231.18	ENSMUST00000118440.3	2681	10	-141	22911	-11	0	5prime_fragment	FALSE	canonical	3	63	junction_6	13.5123400391395	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGACTTGGTTTACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	46385323	46442482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600
transcript_70060.known	chr19	+	3580	6	FSM	ENSMUSG00000025034.10	ENSMUST00000026008.9	3580	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	429.31275312993	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGGCCCAATGGGACAC	NA	False	NA	NA	False	AATAAA	-21	NA	46490140	46505287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46491453_46501161_46501258_46501546_46501781_46502891_46502924_46503060_46503177_46503497
transcript_70071.known	chr19	-	843	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTAAATGTCTCAGAGCA	NA	False	NA	-21	True	AATAAA	-35	NA	46561532	46519534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
transcript_70075.known	chr19	+	3205	12	FSM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	6.85384611817119	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACACTGTCTGCAAAC	NA	False	NA	15	True	AATAAA	-15	NA	46561805	46585334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110
transcript_70087.nnic	chr19	+	3870	6	NNC	ENSMUSG00000047731.18	novel	3911	5	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	57.2174798466343	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTGCCGCTCCTTGTTC	NA	False	NA	24	True	AATAAA	-25	NA	46587529	46645828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_46587615_46587685_46587733_46595150_46595199_46632791_46632895_46640912_46641075_46642403
transcript_70089.known	chr19	+	3911	5	FSM	ENSMUSG00000047731.18	ENSMUST00000099376.11	3911	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	18.7666592658363	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAATCTCCTGCCGCTC	NA	False	NA	17	True	AATAAA	-18	NA	46587552	46645821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46587733_46595150_46595199_46632791_46632895_46640912_46641075_46642403
transcript_70095.nnic	chr19	+	3822	5	NNC	ENSMUSG00000047731.18	novel	3900	4	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.5899952822769	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTGCCGCTCCTTGTTC	NA	False	NA	24	True	AATAAA	-25	NA	46587529	46645828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_46587615_46587685_46587733_46632791_46632895_46640912_46641075_46642403
transcript_70096.known	chr19	+	3900	4	FSM	ENSMUSG00000047731.18	ENSMUST00000138302.9	3900	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	42.0898509804389	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTGCCGCTCCTTGTTC	NA	False	NA	24	True	AATAAA	-25	NA	46587522	46645828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46587733_46632791_46632895_46640912_46641075_46642403
transcript_70099.known	chr19	+	3979	4	FSM	ENSMUSG00000047731.18	ENSMUST00000132202.3	3979	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	51.03593505234	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATCTCCTGCCGCTCCTT	NA	False	NA	20	True	AATAAA	-21	NA	46587551	46645824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46587733_46632791_46633007_46640912_46641075_46642403
transcript_70100.known	chr19	+	3865	4	FSM	ENSMUSG00000047731.18	ENSMUST00000111855.5	3865	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	71.4718281718204	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATCTCCTGCCGCTCCTT	NA	False	NA	20	True	AATAAA	-21	NA	46611839	46645824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46612019_46632791_46632895_46640912_46641075_46642403
transcript_70102.known	chr19	+	2176	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAGACCAATCATTT	9071	False	NA	NA	False	AATAAA	-18	NA	46678344	46691821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
transcript_70105.nnic	chr19	+	694	5	NNC	ENSMUSG00000062376.8	novel	2176	5	NA	NA	5	-1595	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	74.0553002829642	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTCGTGAAAAGAAGAAGC	9076	False	NA	NA	False	NA	NA	NA	46678349	46690226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_46678643_46687994_46688058_46688176_46688221_46689213_46689235_46689953
transcript_70114.known	chr19	+	1736	11	FSM	ENSMUSG00000003559.9	ENSMUST00000003655.9	1736	11	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_6	16.3612346722367	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGATGTCTGTAGTTT	5974	False	NA	30	True	AATAAA	-40	NA	46695896	46729534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_70120.known	chr19	+	1659	10	FSM	ENSMUSG00000003559.9	ENSMUST00000236063.2	1659	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	56.2713882519569	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAACAAATAAAAA	6191	False	NA	-27	True	NA	NA	NA	46696113	46729477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46696239_46696508_46696637_46697406_46697558_46697985_46698101_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_70121.known	chr19	+	1620	8	FSM	ENSMUSG00000003559.9	ENSMUST00000236465.2	1620	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	62.3112660563964	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATACCACAATGGATGTC	6434	False	NA	22	True	AATAAA	-32	NA	46696356	46729526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46696637_46697406_46697558_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_70122.known	chr19	+	1719	9	FSM	ENSMUSG00000003559.9	ENSMUST00000237219.2	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_4	13.865424623862	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCTGTAGTTTGTCT	6484	False	NA	34	True	AATAAA	-44	NA	46696406	46729538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_70128.known	chr19	+	4955	8	FSM	ENSMUSG00000064105.14	ENSMUST00000099373.12	4955	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	39.1240830889495	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAGATGAAGGACTTGAG	NA	False	NA	NA	False	NA	NA	NA	46750034	46868631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
transcript_70131.nnic	chr19	+	1411	8	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46192	-71	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	43.6507474747231	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTTTTATCGTTTCTTT	NA	False	NA	13	True	AATAGA	-19	NA	46807906	46866730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_46808062_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
transcript_70136.known	chr19	+	3051	7	FSM	ENSMUSG00000064105.14	ENSMUST00000077666.6	3051	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	45.4337123975383	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATCATGTTTTTGTTT	NA	False	NA	29	True	TTTAAA	-25	NA	46750042	46866801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46865646_46865832_46866271
transcript_70143.known	chr19	+	1941	2	FSM	ENSMUSG00000064105.14	ENSMUST00000235378.2	1941	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTCTCTGTGCCCTTGC	NA	False	NA	NA	False	NA	NA	NA	46750043	46842491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46751833_46842339
transcript_70149.nic	chr19	-	2150	19	NIC	ENSMUSG00000025041.18	novel	3939	19	NA	NA	-57	350	combination_of_known_junctions	FALSE	canonical	2	3	junction_12	46.3087131496897	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTTTTGTGTATCTGT	7135	False	NA	-21	True	TTTAAA	-19	NA	46950804	46877096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46886766_46886961_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950710
transcript_70151.known	chr19	-	2788	19	FSM	ENSMUSG00000025041.18	ENSMUST00000235596.2	2788	19	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_16	45.187572037748	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTGGCCCTTGTGTAGT	7192	False	NA	NA	False	AGTAAA	-17	NA	46950747	46876266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46897928_46897988_46912700_46912775_46939284_46939405_46950710
transcript_70153.known	chr19	-	3728	18	FSM	ENSMUSG00000025041.18	ENSMUST00000168536.9	3728	18	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_5	15.8666589126981	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAAGTCTGAATAATTT	7192	False	NA	NA	False	AGTAAA	-14	NA	46950747	46875267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950710
transcript_70155.known	chr19	-	3148	18	FSM	ENSMUSG00000025041.18	ENSMUST00000172239.3	3148	18	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_17	29.5968295318789	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTGGCCCTTGTGTAGT	NA	False	NA	NA	False	AGTAAA	-17	NA	47003592	46876266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_47003136
transcript_70158.known	chr19	+	1945	1	FSM	ENSMUSG00000117814.2	ENSMUST00000236822.2	1945	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTGTGTGTTCCCTCTT	6021	False	NA	NA	False	GATAAA	-23	NA	46869933	46871878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_46869900_46871900
transcript_70159.known	chr19	+	3240	3	FSM	ENSMUSG00000034336.4	ENSMUST00000037636.4	3240	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	0.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGACTCGTGCTCTGTGGT	NA	False	NA	12	True	ATTAAA	-15	NA	47003136	47013766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_47004259_47010271_47010397_47011773
transcript_70164.nic	chr19	-	2252	11	NIC	ENSMUSG00000025050.9	novel	2159	10	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_4	203.669830853762	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGGTGTGTTGACATA	NA	False	NA	-19	True	AATAAA	-17	NA	47039418	47022055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_47023125_47025676_47025764_47028482_47028582_47030560_47030579_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
transcript_70166.known	chr19	-	2068	10	FSM	ENSMUSG00000025050.9	ENSMUST00000235633.2	2068	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	248.489411553734	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGAGGTGTGTTGACA	NA	False	NA	-21	True	AATAAA	-15	NA	47039345	47022057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47023125_47025676_47025764_47028482_47028582_47030560_47030579_47031204_47031233_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
transcript_70167.known	chr19	-	2159	10	FSM	ENSMUSG00000025050.9	ENSMUST00000026032.7	2159	10	0	0	0	0	multi-exon	FALSE	canonical	3	486	junction_3	49.2396507895471	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGGTGTGTTGACATA	NA	False	NA	-19	True	AATAAA	-17	NA	47039343	47022055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47023125_47025676_47025764_47028482_47028582_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
transcript_70173.known	chr19	-	2832	7	FSM	ENSMUSG00000025050.9	ENSMUST00000236339.2	2832	7	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_4	32.688768033616	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTTAAAAAGAAAAACT	NA	False	NA	NA	False	NA	NA	NA	47039329	47029262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
transcript_70177.nic	chr19	-	782	4	ISM	ENSMUSG00000025050.9	ENSMUST00000236339.2	2832	7	-89	7284	-73	-7284	5prime_fragment	FALSE	canonical	3	493	junction_1	36.7544403968948	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTTCTTTTATTTCAT	NA	False	NA	2	True	NA	NA	NA	47039418	47036546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_47036603_47037238_47037336_47037428_47037529_47038889
transcript_70179.known	chr19	+	3260	11	FSM	ENSMUSG00000025049.7	ENSMUST00000026027.7	3260	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	39.3161544406367	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTGTACAAATTGAGTA	NA	False	NA	15	True	AATAAA	-27	NA	47056184	47071918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_47056766_47059419_47059658_47063251_47063568_47064174_47064339_47064435_47064572_47065712_47065834_47067206_47067337_47068979_47069145_47070247_47070426_47070582_47070761_47070865
transcript_70189.known	chr19	-	425	5	FSM	ENSMUSG00000071528.5	ENSMUST00000237720.2	425	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2533.27548590752	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATTATGAACCTGGAA	NA	False	NA	-22	True	NA	NA	NA	47079073	47071924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47072009_47073207_47073298_47074393_47074487_47074572_47074669_47079011
transcript_70191.known	chr19	-	362	4	FSM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	0	0	0	0	multi-exon	FALSE	canonical	3	3669	junction_3	1157.30270696804	884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGGTTGTCTTTATT	NA	False	NA	-4	True	AATAAA	-13	NA	47079082	47071906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47072009_47074393_47074487_47074572_47074669_47079011
transcript_70192.nic	chr19	+	849	2	ISM	ENSMUSG00000025049.7	ENSMUST00000026027.7	3260	11	-44	12275	-44	-12275	5prime_fragment	FALSE	canonical	3	300	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCTTTGAGAAGTATGT	NA	False	NA	10	True	AATGAA	-7	NA	47056140	47059643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_47056766_47059419
transcript_70194.known	chr19	+	6761	36	FSM	ENSMUSG00000025047.10	ENSMUST00000072141.4	6761	36	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_7	35.2497097976186	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTTCTCTTTAAGTT	NA	False	NA	NA	False	ATTAAA	-20	NA	47079206	47120304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_47079307_47081220_47081340_47082189_47082322_47083646_47083815_47085293_47085456_47086559_47086684_47087129_47087312_47089501_47089610_47091005_47091213_47092190_47092316_47092471_47092533_47093094_47093242_47094735_47094988_47095449_47095591_47095992_47096188_47096861_47097033_47097992_47098213_47099399_47099550_47100476_47100593_47101579_47102155_47102993_47103057_47105735_47105842_47107974_47108065_47108231_47108335_47108685_47108864_47112869_47112927_47113483_47113607_47114744_47114868_47115313_47115549_47115689_47115807_47116384_47116532_47116713_47116962_47117580_47117750_47118067_47118222_47118386_47118553_47119077
transcript_70210.nic	chr19	+	322	3	ISM	ENSMUSG00000025047.10	ENSMUST00000072141.4	6761	36	-37	38049	-37	-34665	5prime_fragment	FALSE	canonical	3	191	junction_2	3.5	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGAAAATTGAAAAGAGAAA	NA	False	NA	NA	False	ATTAAA	-40	NA	47079169	47082255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_47079307_47081220_47081340_47082189
transcript_70211.known	chr19	-	2458	3	FSM	ENSMUSG00000033033.11	ENSMUST00000035822.2	2458	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	1	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAAACAA	5329	False	NA	NA	False	NA	NA	NA	47126733	47120261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47121613_47123787_47124505_47126343
transcript_70212.known	chr19	+	4158	6	FSM	ENSMUSG00000006435.17	ENSMUST00000111808.11	4158	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	24.9206741481847	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCTGTGCTGTGCGTCTGG	NA	False	NA	40	True	AATAAA	-22	NA	47167258	47247880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_47167991_47228240_47228483_47228788_47229111_47241557_47242248_47245150_47245298_47245855
transcript_70217.nic	chr19	+	3247	4	ISM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	11370	0	11370	0	3prime_fragment	FALSE	canonical	3	53	junction_1	25.0909456887451	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGAGGGCTGTGCTGTGC	NA	False	NA	34	True	AATAAA	-16	NA	47228719	47247874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_47229111_47241557_47242248_47245150_47245298_47245855
transcript_70218.known	chr19	+	4034	3	FSM	ENSMUSG00000006435.17	ENSMUST00000235326.2	4034	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	47167460	47232050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_47167991_47228240_47228483_47228788
transcript_70219.nnic	chr19	+	2555	3	NIC	ENSMUSG00000006435.17	novel	3606	6	NA	NA	11372	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	55.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGAGGGCTGTGCTGTGC	NA	False	NA	34	True	AATAAA	-16	NA	47228721	47247874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_47229111_47245150_47245298_47245855
transcript_70221.nic	chr19	-	1271	6	NIC	ENSMUSG00000053617.13	novel	799	5	NA	NA	-211	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_1	1.83303027798234	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCAACTGTGTTCCTG	7711	False	NA	NA	False	AAGAAA	-13	NA	47453051	47352047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_47352444_47353061_47353154_47361822_47361900_47386254_47386331_47412928_47413010_47452502
transcript_70223.known	chr19	-	1992	10	FSM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	7.26907877057606	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCATTTCCTTATGACTT	NA	False	NA	-10	True	AATAAA	-27	NA	47525558	47489471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
transcript_70227.known	chr19	-	558	5	FSM	ENSMUSG00000042694.18	ENSMUST00000182431.8	558	5	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	57.4429064376099	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCAGGCCAGTCTCCACC	NA	False	NA	NA	False	NA	NA	NA	47525403	47510570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47510637_47513125_47513195_47517075_47517172_47524634_47524811_47525252
transcript_70228.known	chr19	-	690	2	FSM	ENSMUSG00000042694.18	ENSMUST00000182714.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCTGGGCTACATAAGA	NA	False	NA	NA	False	NA	NA	NA	47525485	47524353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47524811_47525252
transcript_70230.known	chr19	-	1618	10	FSM	ENSMUSG00000042694.18	ENSMUST00000182808.8	1618	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	42.2937989792684	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTCTGTATGAACTTGT	NA	False	NA	NA	False	AAGAAA	-15	NA	47525475	47495643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47496038_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
transcript_70231.nic	chr19	+	1885	6	ISM	ENSMUSG00000025060.16	ENSMUST00000051691.8	4239	19	31977	21503	-8674	-4402	internal_fragment	FALSE	canonical	3	226	junction_4	45.4110118803799	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGTGTCTGGGGCCTT	NA	False	NA	NA	False	NA	NA	NA	47600434	47609391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_47600491_47603634_47603708_47603844_47604040_47604960_47605043_47607629_47607759_47608041
transcript_70232.nnic	chr19	+	1154	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	45	-409	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	786.61442270022	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAAGCTGTTGTGGCTT	NA	False	NA	45	True	TTTAAA	-13	NA	47720165	47723618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_47720261_47721068_47721144_47721192_47721428_47721957_47722351_47723262
transcript_70234.nnic	chr19	+	1507	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	45	-56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	786.61442270022	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCAATTTGTTTTCATT	NA	False	NA	12	True	ATTAAA	-18	NA	47720165	47723971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_47720261_47721068_47721144_47721192_47721428_47721957_47722351_47723262
transcript_70235.nnic	chr19	+	1114	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	37	-409	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	786.61442270022	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAAGCTGTTGTGGCTT	NA	False	NA	45	True	TTTAAA	-13	NA	47720157	47723618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957_47722351_47723262
transcript_70236.nnic	chr19	+	1213	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	62	-285	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	786.61442270022	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATTGTGTTTAAAAGG	NA	False	NA	NA	False	TATAAA	-5	NA	47720182	47723742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957_47722351_47723262
transcript_70237.nnic	chr19	+	1527	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	-23	-56	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCAATTTGTTTTCATT	NA	False	NA	12	True	ATTAAA	-18	NA	47720097	47723971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957_47722351_47723262
transcript_70248.nnic	chr19	+	697	4	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	42	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	840.779136013469	94	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAGAGAAAAATTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	47720162	47722246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_47720261_47721068_47721144_47721192_47721428_47721957
transcript_70249.nnic	chr19	+	646	4	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	840.779136013469	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAGAGAAAAATTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	47720165	47722246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957
transcript_70252.nnic	chr19	+	676	4	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	63	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	840.779136013469	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAGAGAAAAATTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	47720183	47722246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_47720261_47721068_47721336_47721384_47721428_47721957
transcript_70254.known	chr19	+	1657	4	FSM	ENSMUSG00000025066.11	ENSMUST00000099353.6	1657	4	0	0	0	0	multi-exon	FALSE	canonical	3	1732	junction_1	59.801523577767	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_47720261_47721068_47721428_47721957_47722351_47723262
transcript_70255.known	chr19	-	892	5	FSM	ENSMUSG00000044948.18	ENSMUST00000159204.2	892	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4790199457749	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACCATTCTGCTCTTTAC	NA	False	NA	NA	False	NA	NA	NA	47825800	47811392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47811619_47814200_47814369_47818822_47818920_47824002_47824257_47825653
transcript_70257.known	chr19	+	1182	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_4	32.103582354622	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTCCAAACCACCTCAG	8468	False	NA	21	True	ATTAAA	-30	NA	47843408	47853229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
transcript_70259.known	chr19	+	1138	6	FSM	ENSMUSG00000025068.9	ENSMUST00000237472.2	1138	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	138.250497286628	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAGTCCAAACCACCTCA	8536	False	NA	20	True	ATTAAA	-29	NA	47843476	47853228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847995_47851817_47851922_47852735
transcript_70262.known	chr19	+	1351	9	FSM	ENSMUSG00000025069.16	ENSMUST00000056159.11	1351	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	0.992156741649222	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTCCTGAAGCCTGTA	96	False	NA	NA	False	AATAAA	-36	NA	47854205	47874763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_47854369_47858124_47858200_47858647_47858763_47860092_47860243_47860454_47860564_47863268_47863492_47864834_47864937_47873094_47873202_47874456
transcript_70263.known	chr19	-	3760	2	FSM	ENSMUSG00000117975.2	ENSMUST00000095998.7	3760	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAAGGAGTAGAGTTTGC	6774	False	NA	NA	False	ATTAAA	-16	NA	47907738	47883040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_47886625_47907562
transcript_70265.known	chr19	-	4078	21	FSM	ENSMUSG00000025027.19	ENSMUST00000183108.8	4078	21	0	0	0	0	multi-exon	FALSE	canonical	3	790	junction_19	199.189727395767	2690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	9945	False	NA	-3	True	AATAAA	-14	NA	53028645	52979613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
transcript_70290.nic	chr19	-	2479	20	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	690	junction_19	186.942819408855	2549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	4996	False	NA	-3	True	AATAAA	-14	NA	53027135	52979613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
transcript_70303.known	chr19	-	2475	19	FSM	ENSMUSG00000025027.19	ENSMUST00000182877.8	2475	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	334.822419304825	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGCTTTGTCTGCCTCT	4728	False	NA	-2	True	AATAAA	-15	NA	53008727	52979612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53008416
transcript_70325.known	chr19	-	2216	20	FSM	ENSMUSG00000025027.19	ENSMUST00000236456.2	2216	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	348.705028176968	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTTTGTTGCGTCT	5059	False	NA	NA	False	NA	NA	NA	53027072	52920356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_52920694_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
transcript_70328.nnic	chr19	-	1479	3	Antisense	novelGene_ENSMUSG00000099988.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTCTTTCTTGTAA	5164	False	NA	NA	False	AATAAA	-29	NA	53052925	53039146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr19_-_53040340_53050500_53050648_53052786
transcript_70338.known	chr19	+	4054	15	FSM	ENSMUSG00000025026.16	ENSMUST00000237430.2	4054	15	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_5	22.1124214791929	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGGTATAATGGGGT	151	False	NA	8	True	AATAAA	-17	NA	53131404	53235518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53131521_53205231_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
transcript_70342.known	chr19	+	4297	14	FSM	ENSMUSG00000025026.16	ENSMUST00000050096.15	4297	14	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_13	57.745923803991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTGTTTTCAATTTA	2483	False	NA	NA	False	GATAAA	-27	NA	53131186	53235639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53131521_53205231_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53233428
transcript_70353.known	chr19	+	2627	6	FSM	ENSMUSG00000025025.15	ENSMUST00000003870.15	2627	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	71.8843515655528	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGAGTTGTGTGTTAATGT	NA	False	NA	18	True	AATAAA	-23	NA	53298948	53361724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53299405_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
transcript_70356.known	chr19	+	2340	6	FSM	ENSMUSG00000025025.15	ENSMUST00000111737.3	2340	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	29.7859027058103	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGCTTTATGAT	4414	False	NA	NA	False	TTTAAA	-25	NA	53317843	53361585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53318152_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
transcript_70358.known	chr19	+	5036	6	FSM	ENSMUSG00000025025.15	ENSMUST00000025998.15	5036	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	85.2478738737806	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGTCCACCTCAATCTC	4459	False	NA	NA	False	CATAAA	-22	NA	53317888	53364241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53318237_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
transcript_70360.known	chr19	+	833	6	FSM	ENSMUSG00000025025.15	ENSMUST00000236973.2	833	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	89.9813313971293	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCAGTCTCCTCTTTAA	4809	False	NA	NA	False	NA	NA	NA	53318238	53360242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53318383_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
transcript_70361.known	chr19	+	939	3	FSM	ENSMUSG00000025025.15	ENSMUST00000237837.2	939	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	76	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGTATTTATTGGTGA	4462	False	NA	NA	False	TATAAA	-18	NA	53317891	53320992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53318152_53319781_53319915_53320446
transcript_70367.known	chr19	-	1478	6	FSM	ENSMUSG00000025024.8	ENSMUST00000236962.2	1478	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	83.1903840596977	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGGATGTGCGCCCCT	NA	False	NA	-8	True	ATTAAA	-16	NA	53379005	53368309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53377733_53377854_53378846
transcript_70373.nic	chr19	-	721	5	ISM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	-90	1956	-90	-1472	5prime_fragment	FALSE	canonical	3	184	junction_3	12.6885775404495	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTTTGAAAAAAGCACAGAG	NA	False	NA	NA	False	TATAAA	-10	NA	53379099	53369782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378846
transcript_70376.nic	chr19	-	731	4	ISM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	-143	4161	-143	910	5prime_fragment	FALSE	canonical	3	184	junction_2	11.8133634311129	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGACGCTTCCCAGAC	NA	False	NA	2	True	NA	NA	NA	53379152	53371987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_53372150_53372884_53373028_53377733_53377854_53378846
transcript_70378.known	chr19	+	2473	4	FSM	ENSMUSG00000034765.7	ENSMUST00000038287.7	2473	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	7.25718035235908	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATCCTGTTAGTGGTGG	NA	False	NA	79	True	NA	NA	NA	53517539	53530862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53518128_53522256_53522406_53525887_53526108_53529346
transcript_70380.known	chr19	-	901	1	FSM	ENSMUSG00000071497.5	ENSMUST00000095978.5	901	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	609	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53577499	53576598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_53576600_53577500
transcript_70381.known	chr19	+	4851	29	FSM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	0	0	0	0	multi-exon	FALSE	non_canonical	3	891	junction_13	92.0610586535271	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGTGTGTAATTCATCA	NA	False	NA	NA	False	CATAAA	-14	NA	53588828	53634264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
transcript_70385.nic	chr19	+	2328	20	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-5	10098	-5	-760	5prime_fragment	FALSE	non_canonical	3	891	junction_13	72.2987798887865	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAGCATCCAGAGATAG	NA	False	NA	NA	False	AAGAAA	-2	NA	53588823	53624166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101
transcript_70386.nic	chr19	+	1791	14	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-263	17902	-263	-8564	5prime_fragment	FALSE	canonical	3	891	junction_13	80.6219903341749	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGAACTACAAAGTGAAAG	NA	False	NA	NA	False	AGTAAA	-11	NA	53588565	53616362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281
transcript_70387.nic	chr19	+	1328	13	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-15	20805	-15	-11467	5prime_fragment	FALSE	canonical	3	969	junction_6	66.6481224208321	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGATAAATGGATTAAAAAG	NA	False	NA	NA	False	AAGAAA	-1	NA	53588813	53613459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379
transcript_70388.nic	chr19	+	1445	13	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-14	20687	-14	-11349	5prime_fragment	FALSE	canonical	3	969	junction_6	66.6481224208321	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGGAGCAATATAATGTAA	NA	False	NA	NA	False	AATAAA	-9	NA	53588814	53613577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379
transcript_70390.nic	chr19	+	1178	12	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-17	22317	-17	-12979	5prime_fragment	FALSE	canonical	3	969	junction_6	67.9389614237577	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAGAAAGAACTGGCAGAAA	NA	False	NA	NA	False	ATTAAA	-37	NA	53588811	53611947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897
transcript_70391.nic	chr19	+	1228	12	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-15	22265	-15	-12927	5prime_fragment	FALSE	canonical	3	969	junction_6	67.9389614237577	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGCGAGGAATTGCGAG	NA	False	NA	NA	False	AAGAAA	-3	NA	53588813	53611999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897
transcript_70393.nic	chr19	+	1030	11	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-24	22722	-24	-13384	5prime_fragment	FALSE	canonical	3	969	junction_6	70.1042794699439	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGCTTAGTGCTGAAAG	NA	False	NA	41	True	AAGAAA	-3	NA	53588804	53611542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482
transcript_70399.nic	chr19	+	666	8	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-15	25165	-15	-15827	5prime_fragment	FALSE	canonical	3	969	junction_6	71.2308692540943	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGGAAAGAAGAAAGCATCT	NA	False	NA	NA	False	ATTAAA	-40	NA	53588813	53609099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019
transcript_704.nic	chr1	-	2750	5	NIC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	-7	-127	combination_of_known_junctions	FALSE	canonical	3	35	junction_3	46.4132254858462	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCAAAGGAATCTACAGCT	NA	False	NA	NA	False	AAAAAG	-9	NA	30912982	30860265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_30860396_30863290_30863601_30868923_30870641_30902067_30902337_30912658
transcript_70403.known	chr19	+	4892	14	FSM	ENSMUSG00000043639.16	ENSMUST00000164202.9	4892	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	4.75805141359757	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCATCAGCTTAACCC	4741	False	NA	NA	False	NA	NA	NA	53665736	53853811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53666024_53801678_53802772_53803946_53804009_53805576_53805669_53806353_53806452_53821076_53821221_53823078_53823211_53829409_53829490_53831653_53832276_53838532_53838620_53839607_53840248_53841934_53842067_53847822_53847945_53852510
transcript_70409.known	chr19	-	2766	2	FSM	ENSMUSG00000089679.2	ENSMUST00000162724.2	2766	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAAAAAAAACATGA	NA	False	NA	NA	False	NA	NA	NA	53813559	53807784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_53810514_53813522
transcript_70410.known	chr19	+	1733	13	FSM	ENSMUSG00000024975.14	ENSMUST00000165617.3	1733	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_12	33.2949779329489	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTAGTGGGAGTGCATT	585	False	NA	15	True	AATAAA	-20	NA	53891846	53918284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53891920_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513_53917624_53918147
transcript_70413.known	chr19	+	2381	12	FSM	ENSMUSG00000024975.14	ENSMUST00000025931.14	2381	12	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	6.73954654285478	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAGTGCATTTATTGTG	468	False	NA	22	True	AATAAA	-27	NA	53891729	53918291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53891920_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513
transcript_70418.nic	chr19	+	442	3	ISM	ENSMUSG00000024975.14	ENSMUST00000237060.2	1623	10	-154	20257	-78	12806	5prime_fragment	FALSE	canonical	3	122	junction_1	4	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATGAAATAAATGGAAATT	390	False	NA	NA	False	AATAAA	-1	NA	53891651	53897609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_53891920_53895879_53895987_53897542
transcript_70424.known	chr19	+	3664	9	FSM	ENSMUSG00000024976.15	ENSMUST00000169861.9	3664	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	127.929668177479	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGATTTTTGCTTTTC	3358	False	NA	NA	False	ATTAAA	-20	NA	53932736	54021298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53932834_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_70426.nnic	chr19	+	2247	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-73	-1416	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTATATAAGTTTTCTTT	3852	False	NA	NA	False	AATAGA	-45	NA	53933230	54019882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_70428.nnic	chr19	+	3663	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGATTTTTGCTTTTC	3852	False	NA	NA	False	ATTAAA	-20	NA	53933230	54021298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_70429.nnic	chr19	+	3927	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTGTGTGTGTGGTGT	3852	False	NA	21	True	TATAAA	-24	NA	53933230	54021562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_7043.nic	chr1	+	790	4	ISM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	-68	21886	-63	207	5prime_fragment	FALSE	canonical	3	1772	junction_3	65.2805909559308	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTGGGATGTGGTTAGA	3079	False	NA	NA	False	AATGAA	-3	NA	180396425	180406933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718
transcript_70430.known	chr19	+	3965	9	FSM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	123.021784148174	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTGTGTGTGTGGTGT	3932	False	NA	21	True	TATAAA	-24	NA	53933310	54021562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_53933445_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_70434.known	chr19	-	838	5	FSM	ENSMUSG00000084957.4	ENSMUST00000236885.2	838	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.9315197050548	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCTGACTGCTACGGA	NA	False	NA	NA	False	AATACA	-21	NA	53932611	53919390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_53919934_53920560_53920637_53921921_53922002_53931896_53932011_53932586
transcript_70435.known	chr19	-	787	5	FSM	ENSMUSG00000084957.4	ENSMUST00000235348.2	787	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.3261663584735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGAATCTGAAAATAAACT	NA	False	NA	NA	False	ATTAAA	-34	NA	53932905	53919474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_53919934_53920560_53920637_53921921_53922002_53931896_53932011_53932847
transcript_70438.known	chr19	-	662	4	FSM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	45.8427263102398	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTGTTATGAATGTAAGA	NA	False	NA	NA	False	TATAAA	-31	NA	53932659	53919534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586
transcript_70439.known	chr19	-	2043	4	FSM	ENSMUSG00000084957.4	ENSMUST00000135402.4	2043	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	53.0806514236172	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAATCAACAGTGTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	53933058	53918291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932847
transcript_70441.known	chr19	-	986	1	FSM	ENSMUSG00000084957.4	ENSMUST00000236900.2	986	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	53932909	53931923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_53931900_53932900
transcript_70442.known	chr19	-	613	3	FSM	ENSMUSG00000084957.4	ENSMUST00000235688.2	613	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	103	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGGGCTTGTACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	53932891	53919440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_53919934_53920560_53920637_53932847
transcript_70443.known	chr19	-	3832	21	FSM	ENSMUSG00000024978.12	ENSMUST00000061856.6	3832	21	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	9.97045635866283	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCTGAACTTGAATTTC	9003	False	NA	NA	False	GATAAA	-23	NA	55087883	55058165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_55059479_55061143_55061203_55063002_55063193_55063973_55064112_55064722_55064801_55066257_55066401_55066754_55067020_55067647_55067719_55068815_55068932_55069823_55069910_55070033_55070148_55071632_55071846_55072129_55072230_55075816_55075954_55076542_55076640_55077229_55077377_55079567_55079682_55082350_55082425_55084552_55084676_55085928_55086060_55087760
transcript_70448.known	chr19	+	4243	22	FSM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	11.2473730871055	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGACTTGTCTCATCTG	NA	False	NA	NA	False	AATATA	-16	NA	55241800	55286152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_55242599_55257075_55257261_55261200_55261310_55266338_55266404_55266512_55266615_55267895_55267996_55268872_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204_55280322_55282018_55282163_55282633_55282736_55283264_55283337_55283804_55283955_55284797
transcript_7046.nnic	chr1	+	3044	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	31.7940595429747	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468906	180518252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_180468963_180469481_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
transcript_70462.known	chr19	-	2263	11	FSM	ENSMUSG00000024982.11	ENSMUST00000076891.7	2263	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_10	157.939355450122	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTATAGTTTTCACCA	7441	False	NA	-26	True	AATAAA	-19	NA	55304462	55286751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304111
transcript_70463.known	chr19	-	2168	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224897.2	2168	11	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_6	59.8815497461447	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCATTGTTTTTAGTT	7439	False	NA	-7	True	AATAAA	-38	NA	55304464	55286732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
transcript_70474.known	chr19	-	2603	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224291.2	2603	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	163.592298107215	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7483	False	NA	NA	False	AAGAAA	-33	NA	55304420	55289234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_55290302_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
transcript_70476.known	chr19	+	3405	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTTTTAAATGTTCCG	NA	False	NA	45	True	ATTAAA	-15	NA	55304782	55614993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
transcript_70488.known	chr19	+	1244	8	FSM	ENSMUSG00000024983.11	ENSMUST00000225529.2	1244	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	38.5687829780532	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCGGCCCCTTTCTACTG	NA	False	NA	NA	False	ATTAAA	-14	NA	55304726	55565433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55564905
transcript_70489.known	chr19	+	1599	4	FSM	ENSMUSG00000024983.11	ENSMUST00000226069.2	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	51.1620519091597	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATCATGCATCTTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	55304758	55355935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55354724
transcript_7049.known	chr1	+	2948	15	FSM	ENSMUSG00000058729.14	ENSMUST00000193892.6	2948	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	32.7924829614275	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468924	180518252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496330_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
transcript_70490.known	chr19	+	4175	9	FSM	ENSMUSG00000024983.11	ENSMUST00000223690.2	4175	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	45.0832563153994	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGTTTATCGCTTTTT	NA	False	NA	14	True	ATTAAA	-18	NA	55304781	55615741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55375620_55375642_55380215_55380301_55486942_55487014_55487674_55487737_55612248
transcript_70495.known	chr19	+	2324	12	FSM	ENSMUSG00000024985.21	ENSMUST00000111659.9	2324	12	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	25.077400843346	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAGAAGCAATTTTGAA	NA	False	NA	NA	False	AAAAAG	-9	NA	55730489	55920641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905770_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55919865
transcript_70500.nnic	chr19	+	2298	7	NNC	ENSMUSG00000025076.13	novel	1603	2	NA	NA	-319	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	11.8988794990677	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGACTGGTCCGGTCTG	NA	False	NA	14	True	ATTAAA	-15	NA	56385241	56430776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_+_56385379_56392847_56392958_56421673_56421811_56422233_56422363_56424658_56424835_56425150_56425281_56429297
transcript_70501.known	chr19	+	2350	7	FSM	ENSMUSG00000025076.13	ENSMUST00000026062.10	2350	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.36177822799744	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGACTGGTCCGGTCTG	NA	False	NA	14	True	ATTAAA	-15	NA	56385560	56430776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_56385750_56392847_56392958_56421673_56421811_56422233_56422363_56424658_56424835_56425150_56425281_56429297
transcript_70504.nic	chr19	-	4489	10	FSM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	-380	0	-189	0	multi-exon	FALSE	canonical	3	154	junction_5	33.6088612653799	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGCATATTTGGATGGG	7785	False	NA	-10	True	AATAAA	-18	NA	56536864	56517600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536405
transcript_70505.known	chr19	-	4066	10	FSM	ENSMUSG00000025077.15	ENSMUST00000182276.3	4087	10	21	0	21	0	multi-exon	FALSE	canonical	3	30	junction_9	50.5063252364383	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGCATATTTGGATGGG	7995	False	NA	-10	True	AATAAA	-18	NA	56536654	56517600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536618
transcript_70507.known	chr19	-	899	2	ISM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	26	17689	26	-6847	5prime_fragment	FALSE	canonical	3	276	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTCGAGCTGTAGAGATG	8191	False	NA	NA	False	NA	NA	NA	56536458	56535289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_56536136_56536405
transcript_7051.known	chr1	+	2017	11	FSM	ENSMUSG00000058729.14	ENSMUST00000191744.6	2017	11	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	17.0590152119048	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAATTAAAAAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	180468930	180502606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628
transcript_70510.known	chr19	+	8591	11	FSM	ENSMUSG00000025078.10	ENSMUST00000071423.7	8591	11	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	12.4338248338956	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTTCTGTCTTGAAT	NA	False	NA	17	True	ATTAAA	-17	NA	56536692	56591935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_56537293_56540190_56540344_56558847_56559304_56563189_56563312_56564586_56564717_56576601_56576702_56580007_56580240_56580824_56580948_56582091_56582299_56583231_56583452_56585687
transcript_70517.known	chr19	-	6445	16	FSM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_2	9.58239125804317	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTTGATGGCGTCT	5197	False	NA	-1	True	ATTAAA	-22	NA	56810622	56775912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_56779479_56780372_56780593_56781727_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790316_56790422_56795397_56795518_56796409_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
transcript_70521.nic	chr19	-	1530	6	ISM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	-42	19484	-42	-6926	5prime_fragment	FALSE	canonical	3	51	junction_3	2.03960780543711	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCGGCCATGCTGTGG	5155	False	NA	NA	False	AGTAAA	-45	NA	56810664	56795396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_56795518_56796409_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
transcript_70523.nic	chr19	-	1299	5	ISM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	-42	20607	-42	-8049	5prime_fragment	FALSE	canonical	3	51	junction_2	2.17944947177034	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTGAGAGGAAACTTAGA	5155	False	NA	NA	False	AAAAAG	-4	NA	56810664	56796519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
transcript_70524.nic	chr19	-	1074	3	ISM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	-42	22751	-42	-10193	5prime_fragment	FALSE	canonical	3	53	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGTCTGCCACGGCCCGG	5155	False	NA	NA	False	AATAAA	-12	NA	56810664	56798663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_56798798_56801426_56802122_56810419
transcript_70525.nic	chr19	-	955	3	ISM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	-42	22870	-42	-10312	5prime_fragment	FALSE	canonical	3	53	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAATCATCAGGAACTTA	5155	False	NA	NA	False	ATTAAA	-6	NA	56810664	56798782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_56798798_56801426_56802122_56810419
transcript_70526.nic	chr19	-	941	2	ISM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	-42	25513	-42	-12955	5prime_fragment	FALSE	canonical	3	53	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTCTGCTGCTACGGCCC	5155	False	NA	NA	False	NA	NA	NA	56810664	56801425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_56802122_56810419
transcript_70527.known	chr19	+	4049	14	FSM	ENSMUSG00000025082.9	ENSMUST00000026068.8	4049	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	1.44729905555591	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTTTGCCTAGGCAGGCTT	NA	False	NA	NA	False	AATAAA	-17	NA	56862680	56900510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_56863011_56869556_56869619_56873454_56873530_56875309_56875444_56882197_56882308_56886305_56886498_56889959_56890094_56890667_56890801_56891898_56891955_56893910_56894019_56894821_56895395_56897263_56897816_56898121_56898248_56899046
transcript_70529.known	chr19	-	3531	19	FSM	ENSMUSG00000025083.19	ENSMUST00000118800.8	3531	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	3.34257976810918	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGGGTTTCCCTTGTA	NA	False	NA	NA	False	AATAAA	-11	NA	56996630	56900792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_56901841_56902556_56902686_56902801_56902996_56904103_56904260_56904493_56904675_56904755_56905005_56905557_56905670_56906413_56906560_56908808_56909021_56911366_56911472_56911964_56912050_56913498_56913589_56916680_56916861_56918487_56918694_56925666_56925758_56931876_56931972_56933136_56933212_56938569_56938699_56996582
transcript_70531.nnic	chr19	-	3376	16	NNC	ENSMUSG00000025083.19	novel	3531	19	NA	NA	-834	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	3.28227563335765	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGGGTTTCCCTTGTA	NA	False	NA	NA	False	AATAAA	-11	NA	56926504	56900792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr19_-_56901841_56902556_56902686_56902801_56902996_56904103_56904260_56904493_56904675_56904755_56905005_56905557_56905670_56906413_56906560_56908808_56909021_56911366_56911472_56911964_56912050_56913498_56913589_56916680_56916861_56918487_56918694_56925666_56925758_56926312
transcript_70536.known	chr19	-	5927	17	FSM	ENSMUSG00000025085.17	ENSMUST00000111529.8	5927	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	24.9621588609639	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGCTGAGCACCTGGTA	NA	False	NA	NA	False	NA	NA	NA	57107441	57021321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_57025770_57027838_57027920_57028918_57028994_57029846_57029855_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57107183
transcript_7054.known	chr1	-	2294	2	FSM	ENSMUSG00000026497.8	ENSMUST00000027778.8	2294	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAGTTTATTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	180524599	180520607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_180522487_180524184
transcript_70546.known	chr19	+	5951	17	FSM	ENSMUSG00000033478.6	ENSMUST00000036407.6	5951	17	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_15	12.0260134708057	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAACATTGTCGTATA	NA	False	NA	2	True	AATAAA	-13	NA	57349111	57378018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_57349803_57356955_57357035_57359585_57359756_57361371_57361477_57361711_57361835_57366980_57367275_57367410_57367608_57369031_57369147_57369503_57369581_57369663_57369857_57370155_57370326_57370650_57370792_57371598_57371690_57372551_57372696_57373685_57373827_57374711_57374816_57374902
transcript_7056.known	chr1	+	3471	8	FSM	ENSMUSG00000026499.6	ENSMUST00000027780.6	3471	8	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	19.761847389475	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATTGTCTTTCTTCATT	NA	False	NA	20	True	AATACA	-14	NA	180553607	180581769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180553944_180560730_180560873_180561941_180562083_180564256_180564416_180566027_180566203_180572635_180572823_180574358_180574644_180579723
transcript_70561.known	chr19	+	3789	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAGTTCTTTGCAGTAAG	NA	False	NA	18	True	AATAAA	-18	NA	57441343	57479437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
transcript_70564.known	chr19	+	1564	7	FSM	ENSMUSG00000025086.14	ENSMUST00000026072.5	1564	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	76.8803182442251	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGTTGTACAAGCCTAT	NA	False	NA	NA	False	AATAAA	-27	NA	57441365	57474634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57473783
transcript_70567.known	chr19	+	2513	6	FSM	ENSMUSG00000025086.14	ENSMUST00000237166.2	2513	6	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_4	16.6901168360201	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAACGTGGTTCGGCTTGC	NA	False	NA	NA	False	ATTAAA	-17	NA	57441370	57475449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504
transcript_70579.known	chr19	+	1009	9	FSM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.1686273153048	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGAGGTCCTTGTACAG	NA	False	NA	NA	False	AATACA	-14	NA	58500452	58541460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
transcript_70585.nic	chr19	+	876	5	ISM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	-27	25281	2	-25281	5prime_fragment	FALSE	canonical	0	0	junction_1	16.7089048115069	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTTTGTTATGAGC	NA	False	NA	NA	False	AATAAA	-20	NA	58500425	58516179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703
transcript_70586.known	chr19	+	1572	12	FSM	ENSMUSG00000025091.5	ENSMUST00000026081.5	1572	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.31110955471418	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCAGGTGTAGCATGACG	4014	False	NA	NA	False	AATAAA	-24	NA	58748150	58765966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_58748309_58748784_58748940_58749997_58750124_58750681_58750817_58751760_58751873_58753159_58753280_58754693_58754814_58756995_58757115_58759765_58759896_58762501_58762614_58763569_58763738_58765849
transcript_70588.known	chr19	-	5734	12	FSM	ENSMUSG00000025092.8	ENSMUST00000066285.6	5734	12	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_2	4.33704016068239	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGCCTAGAATCGTTTTT	NA	False	NA	-1	True	AATAAA	-19	NA	58849416	58784181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_58788431_58789244_58789349_58792897_58793157_58793832_58793938_58794457_58794545_58797881_58798054_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
transcript_70591.known	chr19	-	1400	7	FSM	ENSMUSG00000025092.8	ENSMUST00000235263.2	1400	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.35889894354067	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGTCAGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	58849399	58808150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_58808810_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
transcript_70592.known	chr19	-	861	3	FSM	ENSMUSG00000025092.8	ENSMUST00000235791.2	861	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACATGTACAGACTTCTG	NA	False	NA	NA	False	AATAAA	-12	NA	58932055	58915271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_58915871_58920321_58920416_58931887
transcript_70593.known	chr19	-	612	3	FSM	ENSMUSG00000025092.8	ENSMUST00000237786.2	612	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGCATATGCATGTGTA	NA	False	NA	NA	False	AATAAA	-15	NA	58932086	58917075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_58917395_58920321_58920416_58931887
transcript_70594.known	chr19	-	1510	7	FSM	ENSMUSG00000025092.8	ENSMUST00000236429.2	1510	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2.54405625374562	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTTCGCTCCACTGT	NA	False	NA	NA	False	CATAAA	-12	NA	58849444	58797329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_58798054_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
transcript_70595.known	chr19	+	2567	14	FSM	ENSMUSG00000048029.11	ENSMUST00000200910.4	2567	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.9551176964829	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCTCACAACCATCCAGT	NA	False	NA	NA	False	AATAAA	-17	NA	58931856	58959853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_58932054_58933965_58934095_58935083_58935275_58941568_58941724_58943574_58943745_58943849_58943982_58946018_58946073_58947437_58947495_58948554_58948723_58951213_58951340_58952809_58953006_58956933_58957002_58957504_58957623_58959047
transcript_70596.known	chr19	-	3974	17	FSM	ENSMUSG00000041362.18	ENSMUST00000047511.15	3974	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	2.31081019341702	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTGTTTCTCTGACTGA	NA	False	NA	NA	False	ATTAAA	-20	NA	59064532	58961927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_58963641_58978620_58978814_58983449_58983571_58988324_58988379_58992271_58992382_58998196_58998280_59003958_59004059_59007236_59007391_59010607_59010755_59016586_59016682_59020604_59020687_59023475_59023574_59026653_59026823_59030293_59030389_59039265_59039327_59049062_59049116_59063886
transcript_70597.known	chr19	-	5982	5	FSM	ENSMUSG00000074746.4	ENSMUST00000099274.4	5982	5	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	13.8021737418423	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAATATCTTCATTTGAT	NA	False	NA	-33	True	AATAAA	-16	NA	59334212	59285609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_59290141_59293589_59293753_59303689_59303793_59316182_59316306_59333150
transcript_70601.nic	chr19	-	2100	4	ISM	ENSMUSG00000074746.4	ENSMUST00000099274.4	5982	5	-90	7421	-90	-7421	5prime_fragment	FALSE	canonical	3	135	junction_2	6.23609564462324	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTATCTGCTTGAGTGT	NA	False	NA	NA	False	AATAAA	-9	NA	59334302	59293030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_59293753_59303689_59303793_59316182_59316306_59333150
transcript_70602.known	chr19	+	396	1	FSM	ENSMUSG00000067038.7	ENSMUST00000086764.7	396	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATTTTGGCTGAAA	NA	False	NA	NA	False	AAGAAA	-1	NA	59310802	59311198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_59310800_59311200
transcript_70609.known	chr19	-	2035	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGGGAAGTCATTGTC	9773	False	NA	NA	False	AATGAA	-25	NA	60215129	60187017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
transcript_70612.nnic	chr19	-	1632	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGTTGATTTATTTT	9769	False	NA	NA	False	NA	NA	NA	60215133	60187346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
transcript_70613.known	chr19	-	951	8	FSM	ENSMUSG00000057858.9	ENSMUST00000238054.2	951	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_7	86.2054972440971	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATATTTGTGTAAGAAAT	9784	False	NA	NA	False	NA	NA	NA	60215118	60187678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60215075
transcript_70618.nnic	chr19	-	1060	7	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_6	66.1624683806629	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTCACTTAAGACCTGT	9769	False	NA	NA	False	AAGAAA	-13	NA	60215133	60188400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
transcript_70633.nnic	chr19	-	718	3	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	2008	intron_retention	FALSE	canonical	3	98	junction_2	39	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTCCAAAAAAGGTGTTTA	9769	False	NA	NA	False	AAAAAG	-5	NA	60215133	60208934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_60209010_60209485_60209737_60214741
transcript_70637.known	chr19	-	5792	9	FSM	ENSMUSG00000033417.17	ENSMUST00000081790.15	5792	9	0	0	0	0	multi-exon	FALSE	canonical	2	169	junction_2	23.687747360186	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTTTGATACCTGGT	6346	False	NA	1	True	ATTAAA	-28	NA	60569463	60513133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_60517526_60517902_60517947_60522573_60522713_60525851_60525942_60531447_60531551_60533883_60533980_60551599_60551703_60552605_60552733_60568765
transcript_7064.nic	chr1	+	725	4	ISM	ENSMUSG00000026499.6	ENSMUST00000027780.6	3471	8	-45	17452	-45	2258	5prime_fragment	FALSE	canonical	3	148	junction_3	19.6468827043885	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGAAGCGGAAGCGAGA	NA	False	NA	NA	False	NA	NA	NA	180553562	180564317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_180553944_180560730_180560873_180561941_180562083_180564256
transcript_70644.known	chr19	-	1305	8	FSM	ENSMUSG00000033417.17	ENSMUST00000166712.9	1305	8	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_3	70.8312164549628	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAACTATGTTTCTCCCAA	6398	False	NA	NA	False	NA	NA	NA	60569411	60517478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_60517526_60517902_60517947_60522573_60522713_60531447_60531551_60533883_60533980_60551599_60551703_60552605_60552733_60568765
transcript_7065.nic	chr1	+	641	3	ISM	ENSMUSG00000026499.6	ENSMUST00000027780.6	3471	8	-45	19710	-45	0	5prime_fragment	FALSE	canonical	3	175	junction_2	10.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGAAGAAGAAGAGAAAAG	NA	False	NA	NA	False	AATAGA	-2	NA	180553562	180562059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_180553944_180560730_180560873_180561941
transcript_70651.known	chr19	-	2861	7	FSM	ENSMUSG00000033417.17	ENSMUST00000111460.5	2861	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.4933463749591	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATAGGTTAGTGGTTCCG	6416	False	NA	NA	False	AGTAAA	-21	NA	60569393	60515765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_60517526_60517902_60517947_60531447_60531551_60533883_60533980_60551599_60551703_60552605_60552733_60568765
transcript_70653.known	chr19	+	3928	1	FSM	ENSMUSG00000072437.5	ENSMUST00000088237.6	3928	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAAATGTGTTTTATTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	60744424	60748352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_60744400_60748400
transcript_70654.known	chr19	-	5125	22	FSM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	309.066534016512	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	8754	False	NA	-31	True	AATAAA	-17	NA	60779081	60749554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_70659.nic	chr19	-	3607	19	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-70	5215	-55	4454	5prime_fragment	FALSE	canonical	0	0	junction_14	313.078644519745	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTCTAGTTTTAAAATT	8684	False	NA	NA	False	NA	NA	NA	60779151	60754769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_70661.nic	chr19	-	3059	17	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-383	7699	-368	1970	5prime_fragment	FALSE	canonical	0	0	junction_12	330.648699528669	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAGAAGAAGTAGAAAGGAA	8371	False	NA	-28	True	AAGAAA	-1	NA	60779464	60757253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_7067.known	chr1	-	600	2	FSM	ENSMUSG00000103156.2	ENSMUST00000193209.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCCAAGTACCACAGACC	NA	False	NA	NA	False	NA	NA	NA	180596221	180591061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_180591486_180596045
transcript_70670.nic	chr19	-	2661	16	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-106	8793	-91	876	5prime_fragment	FALSE	canonical	0	0	junction_11	338.891618203946	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGAAGAGCAGAGGA	8648	False	NA	23	True	NA	NA	NA	60779187	60758347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_70675.nic	chr19	-	2703	14	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-383	10529	-368	-860	5prime_fragment	FALSE	canonical	0	0	junction_9	360.439508174748	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAAGCTTTTCATTTCAT	8371	False	NA	NA	False	AAGAAA	-1	NA	60779464	60760083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_70678.nic	chr19	-	2297	13	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-129	11016	-114	862	5prime_fragment	FALSE	canonical	0	0	junction_8	372.226437579779	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAACTTCAGGAACGCC	8625	False	NA	NA	False	AAGAAA	-2	NA	60779210	60760570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_7068.known	chr1	-	888	4	FSM	ENSMUSG00000060743.13	ENSMUST00000081026.11	888	4	0	0	0	0	multi-exon	TRUE	canonical	1	55	junction_1	1176.16816635869	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACACAGTAGATTCCATC	NA	False	NA	NA	False	AGTAAA	-42	NA	180641112	180630261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_180630768_180637681_180637836_180639363_180639515_180641035
transcript_70680.nic	chr19	-	2087	12	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-70	11661	-55	217	5prime_fragment	FALSE	canonical	0	0	junction_7	385.82953457721	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGAAGAAAACTGTTCGG	8684	False	NA	NA	False	NA	NA	NA	60779151	60761215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_70682.nic	chr19	-	1942	12	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-79	11815	-64	63	5prime_fragment	FALSE	canonical	0	0	junction_7	385.82953457721	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGTCTTGAGAGTCTGAA	8675	False	NA	15	True	AAGAAA	-2	NA	60779160	60761369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr19_-_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_70685.known	chr19	-	3085	1	FSM	ENSMUSG00000024991.9	ENSMUST00000236622.2	3085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCTAGTAT	8739	False	NA	NA	False	NA	NA	NA	60779096	60776011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_60776000_60779100
transcript_70687.nic	chr19	+	2390	9	NIC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	88.7623230881211	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60799985	60824665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
transcript_70688.known	chr19	+	2307	9	FSM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	50.1458809375207	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800048	60824665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
transcript_70690.known	chr19	+	2267	8	FSM	ENSMUSG00000024993.16	ENSMUST00000119633.8	2267	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	141.985771060601	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800028	60824665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_+_60800112_60803029_60803247_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
transcript_70695.known	chr19	-	1309	14	FSM	ENSMUSG00000063698.10	ENSMUST00000135808.8	1309	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_12	6.9961950774782	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCAAAAGGTATACCTTA	NA	False	NA	NA	False	AATAAA	-30	NA	60849917	60827185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60847101_60847177_60848466_60848533_60849736
transcript_70696.nnic	chr19	-	1212	13	NIC	ENSMUSG00000063698.10	novel	1309	14	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_11	6.73094016876956	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAAGAAATCATCAAAAG	NA	False	NA	NA	False	AATAAA	-20	NA	60849905	60827195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60848466_60848533_60849736
transcript_70702.known	chr19	-	1478	7	FSM	ENSMUSG00000024997.8	ENSMUST00000025961.7	1478	7	0	0	0	0	multi-exon	FALSE	canonical	3	658	junction_4	52.5148127251308	846	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGGCACCGTTTCTCC	1447	False	NA	-1	True	AATAAA	-34	NA	60862994	60852488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
transcript_70706.known	chr19	-	1849	12	FSM	ENSMUSG00000059326.8	ENSMUST00000076046.7	1849	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_11	40.804310256849	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9819	False	NA	-2	True	NA	NA	NA	61216856	61212839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962_61215093_61215243_61215365_61215467_61215623_61215709_61215804_61216776
transcript_7071.known	chr1	-	807	3	FSM	ENSMUSG00000060743.13	ENSMUST00000159441.8	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	2337	junction_2	191	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180641168	180637312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_180637836_180639363_180639515_180641035
transcript_70719.known	chr2	+	4149	8	FSM	ENSMUSG00000050530.15	ENSMUST00000115099.9	4149	8	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_6	7.31785627135183	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTTTATTCTGATTCA	886	False	NA	NA	False	AATAAA	-20	NA	3119418	3228843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3119690_3179272_3179501_3187459_3187553_3198313_3198473_3203581_3203759_3221289_3221407_3224506_3224622_3225854
transcript_70722.known	chr2	+	3449	7	FSM	ENSMUSG00000050530.15	ENSMUST00000091505.11	3449	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	16.2241246981839	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTAAGAGTCAGTTCTTCA	917	False	NA	NA	False	AATAAA	-21	NA	3119449	3228289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3119690_3179272_3179501_3187459_3187553_3198313_3198473_3203581_3203759_3221289_3221407_3225854
transcript_70725.known	chr2	+	4461	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	0	0	0	0	multi-exon	TRUE	canonical	3	230	junction_10	26.4695873268632	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGAGTGTTTTCTGTAC	987	False	NA	21	True	AATAAA	-21	NA	3285248	3329914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
transcript_70729.known	chr2	+	1676	13	FSM	ENSMUSG00000026643.17	ENSMUST00000091504.5	1676	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	77.5622957513651	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTAGTTGTTAACAAT	1043	False	NA	10	True	AATAAA	-19	NA	3285304	3327235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
transcript_7073.known	chr1	+	3213	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTGGAGTTTTTTGTT	NA	False	NA	22	True	AATAAA	-22	NA	180678691	180695678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
transcript_70731.known	chr2	+	2162	12	FSM	ENSMUSG00000026643.17	ENSMUST00000102989.10	2162	12	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_2	78.3416969921083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACAGCTGACTGATGAGA	1032	False	NA	NA	False	NA	NA	NA	3285293	3327753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3285444_3305848_3305985_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
transcript_70735.known	chr2	+	2450	2	FSM	ENSMUSG00000026643.17	ENSMUST00000155761.2	2450	2	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	0	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAATAAAATTA	1056	False	NA	NA	False	NA	NA	NA	3285317	3308172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3285444_3305848
transcript_70736.known	chr2	-	1042	2	FSM	ENSMUSG00000049950.7	ENSMUST00000062672.7	1042	2	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	0	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGGATCCTGCATGGA	2317	False	NA	-15	True	AATAAA	-18	NA	3333680	3329985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_3330911_3333563
transcript_70739.known	chr2	+	531	4	FSM	ENSMUSG00000026644.8	ENSMUST00000115089.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.54247233265651	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTGTGTATGGAT	1038	False	NA	NA	False	AATAAA	-16	NA	3337204	3342030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3337259_3341369_3341488_3341591_3341655_3341734
transcript_70740.known	chr2	+	534	4	FSM	ENSMUSG00000026644.8	ENSMUST00000228935.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	3.77123616632825	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTGTGTATGGAT	1038	False	NA	NA	False	AATAAA	-16	NA	3337204	3342030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3337259_3341369_3341491_3341591_3341655_3341734
transcript_70747.known	chr2	+	2469	14	FSM	ENSMUSG00000026648.19	ENSMUST00000102988.10	2469	14	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	4.46419019339905	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAACAGGCTCAAAACCA	1021	False	NA	NA	False	NA	NA	NA	3425186	3455129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
transcript_7076.nic	chr1	+	767	5	ISM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	-99	6914	-99	-5054	5prime_fragment	FALSE	canonical	3	433	junction_2	47.0604664235279	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGGAAATGCTTTTGG	NA	False	NA	NA	False	NA	NA	NA	180678592	180688764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662
transcript_70765.known	chr2	-	4327	6	FSM	ENSMUSG00000026646.17	ENSMUST00000027956.9	4327	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	33.2024095511154	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTTGTTCTGTATTT	NA	False	NA	-2	True	AATAAA	-16	NA	3476068	3456851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_3459767_3460793_3460924_3463517_3463665_3465303_3465964_3473538_3473685_3475739
transcript_70770.known	chr2	-	2331	5	FSM	ENSMUSG00000026646.17	ENSMUST00000127540.2	2331	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	64.4995155020563	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAGAAAAAACTTACTT	NA	False	NA	-33	True	AGTAAA	-5	NA	3476006	3458639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_3459767_3460793_3460924_3463517_3463665_3465303_3465964_3475739
transcript_70774.nic	chr2	-	1239	3	ISM	ENSMUSG00000026646.17	ENSMUST00000027956.9	4327	6	-79	8427	-79	-6639	5prime_fragment	FALSE	canonical	3	149	junction_2	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTTTGTACTTTCTAAC	NA	False	NA	-1	True	ATTAAA	-16	NA	3476147	3465278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_3465964_3473538_3473685_3475739
transcript_70776.known	chr2	+	2143	9	FSM	ENSMUSG00000026648.19	ENSMUST00000131433.2	2143	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	5.19013487300667	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCACCTTCAGATACATTA	1073	False	NA	NA	False	AATAAA	-13	NA	3425238	3443243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794
transcript_70784.known	chr2	-	1795	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3942	False	NA	-5	True	ATTAAA	-20	NA	3513851	3489886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
transcript_7079.known	chr1	+	2473	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	0	0	0	0	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	1420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	21	True	AATAAA	-19	NA	180720672	180726668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
transcript_70792.nic	chr2	-	1563	13	ISM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	-27	887	-27	-761	5prime_fragment	FALSE	canonical	3	902	junction_4	71.8831517116494	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTGCGTGATATATTAG	3915	False	NA	NA	False	GATAAA	-9	NA	3513878	3490773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
transcript_70801.known	chr2	-	2390	5	FSM	ENSMUSG00000051396.16	ENSMUST00000140494.2	2390	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	525.594425389007	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTATCTGAGGCTCTTT	3966	False	NA	NA	False	AGTAAA	-13	NA	3513827	3507445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_3508787_3509329_3510058_3512051_3512135_3512210_3512292_3513670
transcript_70802.known	chr2	-	4314	5	FSM	ENSMUSG00000051396.16	ENSMUST00000124331.8	4314	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	532.771702983557	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGGGTTTGTCTACTTC	3999	False	NA	NA	False	AATAAA	-19	NA	3513794	3505563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_3508787_3509329_3510133_3512051_3512135_3512210_3512292_3513670
transcript_70807.known	chr2	+	3156	4	FSM	ENSMUSG00000026655.16	ENSMUST00000027965.11	3156	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	8.49836585598797	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTTTGTCTCGTTTGT	944	False	NA	19	True	AATAAA	-25	NA	3714494	3783179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_3714674_3773832_3774017_3779454_3779606_3780537
transcript_70811.known	chr2	+	4355	12	FSM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	12.5901706380102	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGGAAGAAAGCAAATCTA	4433	False	NA	NA	False	NA	NA	NA	4564566	4617395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_4565102_4570862_4571002_4577108_4577251_4591171_4591306_4595430_4595554_4599349_4599579_4602148_4602206_4605925_4606167_4606925_4607091_4608187_4609063_4610780_4610878_4615777
transcript_70816.nic	chr2	+	2594	6	ISM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	37482	559	31062	-559	3prime_fragment	FALSE	canonical	3	51	junction_3	8.23164625090267	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCCTTTCAGTTTTTGT	4770	False	NA	19	True	AGTAAA	-23	NA	4602048	4616836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_4602206_4605925_4606167_4606925_4607091_4608187_4609063_4610780_4610878_4615777
transcript_70818.known	chr2	-	1579	10	FSM	ENSMUSG00000039449.15	ENSMUST00000152362.7	1579	10	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTATGGGTCATTGAAT	NA	False	NA	NA	False	NA	NA	NA	4656924	4628838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
transcript_70825.known	chr2	+	2302	9	FSM	ENSMUSG00000048186.15	ENSMUST00000056914.7	2302	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	3.45506874027131	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAGAAAAAAAATGTGAC	4757	False	NA	NA	False	NA	NA	NA	4722955	4805736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_4723104_4725291_4725376_4749029_4749333_4754346_4754470_4757530_4757803_4767888_4768115_4793266_4793387_4801340_4801395_4804764
transcript_70827.known	chr2	+	2251	9	FSM	ENSMUSG00000048186.15	ENSMUST00000184139.8	2251	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	3.45506874027131	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAATAATAATAACT	4443	False	NA	NA	False	AATAAA	-31	NA	4722641	4805374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_4723104_4725291_4725376_4749029_4749333_4754346_4754470_4757530_4757803_4767888_4768115_4793266_4793387_4801343_4801395_4804764
transcript_70838.known	chr2	+	5319	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATGTCTCTGTTTACT	4092	False	NA	NA	False	AATAAA	-17	NA	4886374	4915368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_70843.known	chr2	+	2933	9	FSM	ENSMUSG00000026662.14	ENSMUST00000115019.2	2933	9	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	174.928378200908	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAGAAAAAGCACCAAG	4773	False	NA	NA	False	NA	NA	NA	4887055	4912948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_4887387_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_7085.known	chr1	+	1580	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	16	False	NA	32	True	NA	NA	NA	180731857	180735653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
transcript_70853.nic	chr2	+	2564	8	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	-69	-300	combination_of_known_junctions	FALSE	canonical	3	91	junction_2	174.392707205693	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGCTCTTGTATAATCA	4023	False	NA	17	True	AATAAA	-14	NA	4886305	4912648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_4886672_4889142_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_70854.nic	chr2	+	3227	8	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	-71	361	combination_of_known_junctions	FALSE	canonical	3	91	junction_2	174.392707205693	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTGTTGGACTTGCTTC	4021	False	NA	21	True	AATAAA	-30	NA	4886303	4913309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_4886672_4889142_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_70868.known	chr2	+	1438	9	FSM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_4	31.960669188864	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATTAAGTCAATTTCT	991	False	NA	9	True	AATAAA	-20	NA	4923829	4943541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
transcript_7087.known	chr1	+	2717	5	FSM	ENSMUSG00000026520.9	ENSMUST00000194253.2	2717	5	0	0	0	0	multi-exon	FALSE	canonical	3	1107	junction_1	27.6450718935582	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTAGTCTCACTGTGTA	46	False	NA	31	True	NA	NA	NA	180731887	180735652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180732096_180732308_180733950_180734159_180734253_180734354_180734519_180735041
transcript_70870.known	chr2	-	4867	20	FSM	ENSMUSG00000026669.15	ENSMUST00000102985.8	4867	20	0	0	0	0	multi-exon	FALSE	canonical	2	42	junction_19	167.610417568725	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACATGTTTATCTTTTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	5017155	4994524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5016705
transcript_70875.known	chr2	-	3494	20	FSM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_19	72.612354435182	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	0	True	AATAAA	-38	NA	5017602	4995534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
transcript_70877.known	chr2	-	2411	15	FSM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	40.4028817925511	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTGTTATCTGATTTA	NA	False	NA	-2	True	AGTAAA	-15	NA	5068749	5025454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
transcript_70878.known	chr2	-	2614	14	FSM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_13	32.625179951441	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	False	NA	0	True	AGTAAA	-17	NA	5068856	5025452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
transcript_7088.known	chr1	+	1620	4	FSM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	33.0790299468141	444	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180762586	180765965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180762925_180764111_180764359_180764573_180764820_180765176
transcript_70891.known	chr2	+	2670	3	FSM	ENSMUSG00000026676.8	ENSMUST00000027988.8	2670	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	4	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGTGTCTTTGGATCG	4727	False	NA	NA	False	AATAAA	-42	NA	5142586	5235689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_5143119_5146041_5146217_5233726
transcript_70892.known	chr2	-	1295	11	FSM	ENSMUSG00000039145.17	ENSMUST00000114987.4	1295	11	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	6.22976725086901	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCACCTGCATAGGACTG	1177	False	NA	NA	False	NA	NA	NA	5680857	5303697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5303913_5306306_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5680724
transcript_70893.known	chr2	-	6962	11	FSM	ENSMUSG00000039145.17	ENSMUST00000044009.14	6962	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_10	11.2977873939989	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTTGTCTGTTTCCTA	NA	False	NA	1	True	AATAAA	-21	NA	5719326	5298267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5303913_5306306_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5718956
transcript_70910.nic	chr2	-	3024	2	ISM	ENSMUSG00000039145.17	ENSMUST00000114987.4	1295	11	40	263963	40	2636	5prime_fragment	FALSE	canonical	3	45	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGGAAAAGAGATGAGAGA	1217	False	NA	NA	False	NA	NA	NA	5680817	5567660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_5570592_5680724
transcript_70913.known	chr2	-	1827	13	FSM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_5	82.7531050105607	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTGCTCTCTGGTTC	NA	False	NA	NA	False	AATAAA	-14	NA	5849975	5799104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
transcript_70920.nnic	chr2	-	1465	12	NIC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-42	0	combination_of_known_splicesites	FALSE	canonical	3	91	junction_9	296.801433468727	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5850017	5799475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5838466_5838525_5846763_5846836_5849645
transcript_70923.known	chr2	-	2448	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	0	0	0	0	multi-exon	TRUE	canonical	3	221	junction_3	37.3630833845388	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGTTCTCTAAGAGT	NA	False	NA	-17	True	AATAAA	-10	NA	5900243	5875797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
transcript_70925.nnic	chr2	+	1698	11	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_2	256.400955536441	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGACTTGGGGGTTT	1679	False	NA	NA	False	NA	NA	NA	5849806	5873547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871043_5871053_5871164_5871219_5872899
transcript_70935.known	chr2	+	1590	10	FSM	ENSMUSG00000025817.13	ENSMUST00000179748.8	1590	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	225.953780917937	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGACTTGGGGGTTT	1717	False	NA	NA	False	NA	NA	NA	5849844	5873547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869259_5871042_5871053_5871164_5871219_5872899
transcript_70945.nic	chr2	-	948	9	ISM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	-42	10655	-42	0	5prime_fragment	FALSE	canonical	3	980	junction_1	94.0691235209513	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGGAACACCTACAGTATA	NA	False	NA	NA	False	AAAAAG	-32	NA	5850017	5809759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
transcript_70949.nic	chr2	-	1040	8	NIC	ENSMUSG00000039128.14	novel	600	7	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	373.173538445478	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCATCATTGCTTTTTA	NA	False	NA	2	True	AATACA	-18	NA	5849806	5814365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_5814830_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
transcript_70955.nic	chr2	-	1378	6	ISM	ENSMUSG00000025816.16	ENSMUST00000026926.5	756	8	-87	3953	26	0	5prime_fragment	FALSE	canonical	3	245	junction_1	28.7193314685422	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5900217	5886618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
transcript_70957.known	chr2	-	562	5	FSM	ENSMUSG00000039128.14	ENSMUST00000150876.2	562	5	0	0	0	0	multi-exon	FALSE	canonical	3	1033	junction_1	96.4507646418627	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTCTCAGTTGAGCAAG	NA	False	NA	NA	False	TTTAAA	-5	NA	5849662	5827626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
transcript_7096.known	chr1	+	3306	23	FSM	ENSMUSG00000026519.17	ENSMUST00000027800.15	3306	23	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	9.65307299163423	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCATGCTTCTTCCGGGT	NA	False	NA	15	True	AATAAA	-31	NA	180770023	180802677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180770125_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
transcript_70960.known	chr2	+	1677	3	FSM	ENSMUSG00000025817.13	ENSMUST00000138549.8	1677	3	0	0	0	0	multi-exon	FALSE	canonical	3	607	junction_1	40	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAGAAAAAAAAAAAAAA	1936	False	NA	NA	False	NA	NA	NA	5850063	5862231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_5850197_5859626_5859730_5860790
transcript_70962.known	chr2	-	1303	6	FSM	ENSMUSG00000025816.16	ENSMUST00000194565.2	1303	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	114.035783857524	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5900145	5886618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900070
transcript_70964.nnic	chr2	-	5077	18	NNC	ENSMUSG00000025815.14	novel	3852	18	NA	NA	-7	24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.4538401405885	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCATTTTACTCAAATTT	NA	False	NA	-14	True	AATAAA	-17	NA	5947610	5900901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_5902340_5902773_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947325
transcript_70966.known	chr2	-	3852	18	FSM	ENSMUSG00000025815.14	ENSMUST00000026924.7	3852	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	14.4538401405885	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACATCCATTGCCTTTCC	NA	False	NA	NA	False	AAAAAG	-26	NA	5947554	5901988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5902352_5902867_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947325
transcript_70967.nnic	chr2	-	4946	18	NNC	ENSMUSG00000025815.14	novel	3852	18	NA	NA	-7	-107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.4538401405885	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACACATTATTCTTTTTTT	NA	False	NA	-4	True	ATTAAA	-22	NA	5947610	5901032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_5902340_5902773_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947325
transcript_70971.known	chr2	-	5480	17	FSM	ENSMUSG00000025815.14	ENSMUST00000095147.9	5480	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_14	8.78119439484174	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATTACCACCTT	NA	False	NA	-38	True	NA	NA	NA	5947603	5900925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947325
transcript_70978.known	chr2	+	5174	22	FSM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	0	0	0	0	multi-exon	TRUE	canonical	3	171	junction_5	24.2975694686972	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTTGTTTTATTTGGT	1678	False	NA	17	True	AATAAA	-21	NA	5956279	6061514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_5956365_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051708_6051877_6055148_6055291_6056319_6056441_6060243
transcript_70983.nic	chr2	+	402	2	ISM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	-74	98990	-74	-97789	5prime_fragment	FALSE	canonical	3	197	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGAGAAGGTGAAGGC	1604	False	NA	-12	True	NA	NA	NA	5956205	5962524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_5956365_5962281
transcript_70986.known	chr2	-	945	5	FSM	ENSMUSG00000045319.14	ENSMUST00000126551.2	945	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.007351351695	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAGCAGAGCATCCCAAA	NA	False	NA	NA	False	NA	NA	NA	6134950	6106000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134438_6134641_6134852
transcript_70987.nic	chr2	-	3043	4	ISM	ENSMUSG00000045319.14	ENSMUST00000126551.2	945	5	-721	-1165	-649	0	intron_retention	FALSE	canonical	0	0	junction_3	16.2685791225499	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGCTTGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	6135671	6104835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134438
transcript_70988.known	chr2	-	2061	4	FSM	ENSMUSG00000045319.14	ENSMUST00000054254.12	2061	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	15.3260852434302	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGCTTGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	6134957	6104835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134706
transcript_70989.known	chr2	-	4398	4	FSM	ENSMUSG00000045319.14	ENSMUST00000114942.9	4398	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	5.90668171555645	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATGTG	NA	False	NA	NA	False	ATTAAA	-43	NA	6135022	6102417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134852
transcript_7099.nic	chr1	+	3328	23	NIC	ENSMUSG00000026519.17	novel	3306	23	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	10.7857611983624	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180770122	180802668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_180770255_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
transcript_70990.known	chr2	-	1851	5	FSM	ENSMUSG00000039063.6	ENSMUST00000042658.5	1851	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.1650635094611	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCGTCTATCCACCTAACT	NA	False	NA	NA	False	CATAAA	-22	NA	6217844	6193275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_6194463_6200393_6200595_6211225_6211324_6213278_6213401_6217601
transcript_70991.known	chr2	-	818	3	FSM	ENSMUSG00000039063.6	ENSMUST00000114941.3	818	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGAAATACTCCTCTGAC	NA	False	NA	NA	False	NA	NA	NA	6217790	6210816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_6211324_6213278_6213401_6217601
transcript_70992.known	chr2	+	7484	15	FSM	ENSMUSG00000039046.16	ENSMUST00000114937.8	7484	15	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	18.797660514445	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGATGCAGCCTTGACTTA	4654	False	NA	10	True	ATTAAA	-20	NA	6327477	6451201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_6327766_6341178_6341271_6395865_6395934_6399283_6399367_6405090_6405131_6413739_6413821_6419743_6419852_6425713_6425824_6428232_6428282_6429082_6429204_6431705_6431801_6432362_6432429_6432522_6432623_6435236_6435390_6445171
transcript_71.known	SIRV10003	+	9970	1	FSM	SIRV10003A	SIRV10003	9970	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	9970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV10003_+_0_10000
transcript_7100.nic	chr1	+	3524	23	NIC	ENSMUSG00000026519.17	novel	704	3	NA	NA	-236	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	11.3524490385799	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180773234	180802668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_180773563_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
transcript_71007.nic	chr2	-	2350	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-34	36683	-34	-35157	5prime_fragment	FALSE	canonical	3	137	junction_1	7	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAGAAGAAGAAGAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	10053441	9956045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_9957757_10047237_10047481_10053045
transcript_71008.nic	chr2	-	2173	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-34	36860	-34	-35334	5prime_fragment	FALSE	canonical	3	137	junction_1	7	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAAGGCCCCTCCAACAC	NA	False	NA	89	True	AAGAAA	-17	NA	10053441	9956222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_9957757_10047237_10047481_10053045
transcript_71009.nic	chr2	-	2099	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-34	36934	-34	-35408	5prime_fragment	FALSE	canonical	3	137	junction_1	7	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCGAGAAAGAAGCAAGCG	NA	False	NA	15	True	NA	NA	NA	10053441	9956296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_9957757_10047237_10047481_10053045
transcript_71010.nic	chr2	-	1887	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-34	37146	-34	-35620	5prime_fragment	FALSE	canonical	3	137	junction_1	7	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGCAAAGAGAAAGATAAA	NA	False	NA	NA	False	NA	NA	NA	10053441	9956508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_9957757_10047237_10047481_10053045
transcript_71012.nic	chr2	-	1156	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-34	37877	-34	-36351	5prime_fragment	FALSE	canonical	3	137	junction_1	7	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCACCTGGACGCTCCA	NA	False	NA	NA	False	AAGAAA	-2	NA	10053441	9957239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_9957757_10047237_10047481_10053045
transcript_71013.nic	chr2	-	1048	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-34	37985	-34	-36459	5prime_fragment	FALSE	canonical	3	137	junction_1	7	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTAAAGCTAGCTCTCCAG	NA	False	NA	NA	False	AAAACA	-3	NA	10053441	9957347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_9957757_10047237_10047481_10053045
transcript_71014.known	chr2	-	4792	7	FSM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	19.5078331845327	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTTCCATTTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	10053407	9919362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_9921278_9922913_9923021_9925862_9926113_9945737_9945821_9955924_9957757_10047237_10047481_10053045
transcript_71026.known	chr2	-	1166	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	0	0	0	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	3030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9504	False	NA	-2	True	AATAAA	-19	NA	10085321	10060840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
transcript_7103.known	chr1	-	1741	9	FSM	ENSMUSG00000038776.14	ENSMUST00000036928.12	1741	9	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	19.7214984217731	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGGGCCAGATACCTT	5728	False	NA	-3	True	GATAAA	-18	NA	180845134	180817118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_180817546_180817957_180818084_180819497_180819607_180821443_180821653_180822192_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
transcript_71032.known	chr2	-	1060	9	FSM	ENSMUSG00000025781.15	ENSMUST00000026887.14	1060	9	0	0	0	0	multi-exon	TRUE	canonical	3	78	junction_1	1503.84357564209	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATTGTAACTTTCAGAA	9587	False	NA	12	True	AATAAA	-33	NA	10085238	10060826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
transcript_71044.known	chr2	+	1472	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	5.40832691319598	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAGACACAGTGGCATC	4825	False	NA	NA	False	NA	NA	NA	10085434	10097617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
transcript_71049.known	chr2	+	600	4	FSM	ENSMUSG00000037262.8	ENSMUST00000142599.2	600	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	6.16441400296898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAGATCTGGACGATGAA	4794	False	NA	NA	False	AAAAAG	-5	NA	10085403	10096630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_10085556_10090540_10090636_10094923_10095175_10096528
transcript_71054.known	chr2	+	7874	23	FSM	ENSMUSG00000061186.16	ENSMUST00000041105.7	7874	23	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_1	8.61768314629387	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGGTGTTTGTGTTTCGT	4703	False	NA	3	True	AATAAA	-16	NA	10377260	10600064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
transcript_71062.known	chr2	+	1901	6	FSM	ENSMUSG00000061186.16	ENSMUST00000114864.9	1901	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	9.3936148526539	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAAAATAATG	4689	False	NA	NA	False	AATATA	-9	NA	10377246	10443948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757
transcript_71064.nnic	chr2	-	729	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8778	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	255.585968902833	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370074	10344093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10351924_10352011_10369964
transcript_71070.nnic	chr2	-	663	4	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8758	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_3	186.111674957687	206	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370094	10344093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10369964
transcript_71074.nnic	chr2	-	4429	16	NNC	ENSMUSG00000026773.20	novel	4801	15	NA	NA	-75	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	12.0436244083286	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGGGACTCGCTTCTCA	NA	False	NA	-4	True	AATAAA	-18	NA	11558963	11476635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_11477682_11477736_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11558637
transcript_71077.known	chr2	-	4801	15	FSM	ENSMUSG00000026773.20	ENSMUST00000192949.6	4801	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	9.7969174660571	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAATAGACTATTGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	11558888	11476243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11558637
transcript_71078.known	chr2	-	4634	15	FSM	ENSMUSG00000026773.20	ENSMUST00000114846.9	4634	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	9.41693004267163	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGACTCGCTTCTC	6308	False	NA	-5	True	AATAAA	-17	NA	11506912	11476636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11506435
transcript_71080.known	chr2	-	1599	12	FSM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	0	0	0	0	multi-exon	FALSE	canonical	3	1239	junction_6	93.4948621914506	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTCTGGTTGTTTCT	NA	False	NA	-24	True	TATAAA	-18	NA	11608073	11590247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439_11601607_11602862_11602980_11605429_11605568_11607895
transcript_7109.known	chr1	-	9392	23	FSM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	0	0	0	multi-exon	TRUE	canonical	3	480	junction_18	71.7805568876937	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTGATCTGGAACTTT	NA	False	NA	NA	False	AATAAA	-22	NA	180971769	180914702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_71097.nic	chr2	-	586	4	ISM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	-39	11245	-39	0	5prime_fragment	FALSE	canonical	3	1305	junction_3	70.8378429936994	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAGAGGCAGCGGGAGCT	NA	False	NA	NA	False	NA	NA	NA	11608112	11601492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_11601607_11602862_11602980_11605429_11605568_11607895
transcript_711.nic	chr1	-	2887	4	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	-320	27089	-7	3	5prime_fragment	FALSE	canonical	3	122	junction_2	3.09120616516523	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAATGGCTATTTTTCTTT	NA	False	NA	-9	True	AATAAA	-16	NA	30912982	30868508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_30870641_30876185_30876348_30902067_30902337_30912658
transcript_71104.nic	chr2	-	3648	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-27	0	intron_retention	FALSE	canonical	3	40	junction_19	66.9909695406776	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782420	11747385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782214
transcript_71105.nic	chr2	-	3614	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-21	0	intron_retention	FALSE	canonical	3	40	junction_19	58.1895824009762	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782414	11747385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782242
transcript_71107.nic	chr2	-	3622	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-27	0	intron_retention	FALSE	canonical	3	88	junction_20	47.1269296687149	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782420	11747385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
transcript_71108.known	chr2	-	3567	21	FSM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_20	31.6521721213569	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782393	11747385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
transcript_71128.known	chr2	+	1618	7	FSM	ENSMUSG00000047909.12	ENSMUST00000056108.12	1618	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	18.7742435858871	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGGCCTATTCAATT	4768	False	NA	33	True	AATAAA	-35	NA	11783301	11795136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_11783714_11784487_11784709_11786287_11786331_11788451_11788561_11789101_11789264_11791034_11791114_11794544
transcript_71133.known	chr2	+	3643	6	FSM	ENSMUSG00000047909.12	ENSMUST00000150213.8	3643	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	23.5168025037419	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCTATTCAATTTTTT	4801	False	NA	37	True	AATAAA	-39	NA	11783334	11795140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_11783714_11784487_11784635_11786287_11788568_11789101_11789264_11791034_11791114_11794544
transcript_71135.known	chr2	+	3688	6	FSM	ENSMUSG00000047909.12	ENSMUST00000125024.8	3688	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	23.3871759731696	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTATTCAAGCTCTAA	4804	False	NA	11	True	AATAAA	-13	NA	11783337	11795114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_11783714_11784487_11784709_11786287_11788568_11789101_11789264_11791034_11791114_11794544
transcript_71139.known	chr2	+	1919	2	FSM	ENSMUSG00000047909.12	ENSMUST00000150320.3	1919	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAATAGGATTAAAAAAA	4849	False	NA	NA	False	NA	NA	NA	11783382	11786075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_11783714_11784487
transcript_71144.known	chr2	-	2344	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424281	12352073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
transcript_71154.known	chr2	-	1984	12	FSM	ENSMUSG00000026767.13	ENSMUST00000154899.7	1984	12	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_9	46.6171323098428	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424259	12352073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12410670_12410732_12414811_12414892_12423969
transcript_71164.known	chr2	-	1126	6	FSM	ENSMUSG00000026767.13	ENSMUST00000130097.8	1126	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	7.46726188103779	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	12424252	12404469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
transcript_71166.known	chr2	+	1232	6	FSM	ENSMUSG00000026730.13	ENSMUST00000154269.7	1232	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	7.33212111192934	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGATGCTCCTTAGAGG	4712	False	NA	NA	False	NA	NA	NA	12928851	13005791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_12929010_12979179_12979265_12982970_12983429_12985103_12985370_12999560_12999702_13005667
transcript_71170.known	chr2	+	3571	5	FSM	ENSMUSG00000026730.13	ENSMUST00000134794.8	3571	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	18.3490462967425	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGTCTAAATGTATTCT	4763	False	NA	NA	False	AATAAA	-17	NA	12928902	13008266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_12929010_12982970_12983429_12985103_12985370_12999560_12999702_13005667
transcript_71178.known	chr2	-	1546	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCACACGTTTCTTCTTG	7043	False	NA	-7	True	AATAAA	-12	NA	13276226	13081822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
transcript_71179.known	chr2	-	1604	8	FSM	ENSMUSG00000026727.11	ENSMUST00000114791.9	1604	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	120.515389820858	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTTTGTCAGGGTTTT	7125	False	NA	NA	False	ATTAAA	-21	NA	13276144	13081631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13275721_13275834_13276010
transcript_71181.known	chr2	-	3674	2	FSM	ENSMUSG00000026727.11	ENSMUST00000129257.4	3674	2	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAAAAGA	7147	False	NA	NA	False	NA	NA	NA	13276122	13272271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_13275834_13276010
transcript_71186.known	chr2	-	3788	11	FSM	ENSMUSG00000026723.11	ENSMUST00000124488.7	3788	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	5.37028863283902	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCATTGTGAAACTTACT	9029	False	NA	NA	False	ATTAAA	-23	NA	13549479	13513824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
transcript_71187.nic	chr2	+	1915	10	NIC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	86.9850278020786	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	59	False	NA	14	True	AATAAA	-14	NA	13578707	13587637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_13578872_13579204_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
transcript_71190.known	chr2	+	2193	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	10	False	NA	14	True	AATAAA	-14	NA	13578762	13587637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
transcript_71193.known	chr2	+	1777	8	FSM	ENSMUSG00000026728.10	ENSMUST00000193675.2	1777	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	98.0899212613673	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	50	False	NA	13	True	AATAAA	-13	NA	13579091	13587636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13587283
transcript_71194.known	chr2	-	7618	8	FSM	ENSMUSG00000003418.12	ENSMUST00000003509.10	7618	8	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	4.91146098219174	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATCGTTGTGAGTGTGC	NA	False	NA	NA	False	NA	NA	NA	13798875	13655831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_13662102_13670230_13670324_13673595_13673709_13677293_13677439_13701638_13701726_13728253_13728344_13797564_13797664_13798154
transcript_71202.known	chr2	-	871	6	FSM	ENSMUSG00000063275.16	ENSMUST00000091429.12	871	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	43.3340512761039	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGCATTGTTTCTTGA	NA	False	NA	-2	True	AATAAA	-19	NA	14060831	14031641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_14031818_14040589_14040769_14049593_14049683_14049758_14049778_14049948_14050067_14060541
transcript_71204.known	chr2	-	801	2	FSM	ENSMUSG00000086657.3	ENSMUST00000152524.2	801	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATGGCATATTATAAT	NA	False	NA	NA	False	AATAAA	-16	NA	14078745	14075142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_14075592_14078393
transcript_71209.known	chr2	+	5000	14	FSM	ENSMUSG00000026718.18	ENSMUST00000102960.11	5000	14	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_8	24.7443735759998	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATCTTTGTTTCTTTTTTC	4682	False	NA	NA	False	TATAAA	-17	NA	14078908	14154445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
transcript_71219.known	chr2	-	2897	11	FSM	ENSMUSG00000026707.16	ENSMUST00000028034.15	2897	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	8.53287759199674	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTGAAAAATATCAT	978	False	NA	NA	False	NA	NA	NA	15054091	14999941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
transcript_71220.known	chr2	+	3608	6	FSM	ENSMUSG00000017418.15	ENSMUST00000239125.2	3608	6	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_3	13.7346277707115	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCTTCTCAACATGTTA	4741	False	NA	NA	False	AAGAAA	-15	NA	15060133	15083977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_15060386_15072949_15073011_15074630_15074779_15077934_15078019_15079772_15079925_15081066
transcript_71222.known	chr2	+	1035	6	FSM	ENSMUSG00000017418.15	ENSMUST00000128682.9	1035	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	39.1989795785554	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTGACATCTGAAGTTT	4705	False	NA	NA	False	NA	NA	NA	15060097	15081406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_15060386_15072949_15073011_15074668_15074779_15077934_15078019_15079772_15079925_15081066
transcript_71225.nnic	chr2	+	2983	15	NNC	ENSMUSG00000026748.14	novel	6947	14	NA	NA	-499	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	14.5140677711421	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTTGGTTCAAATGTTC	3846	False	NA	14	True	AATAAA	-27	NA	16360615	16756500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_16360983_16361295_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708195_16716892_16717041_16718480_16718520_16734063_16734225_16756001
transcript_71227.known	chr2	+	2146	14	FSM	ENSMUSG00000026748.14	ENSMUST00000114702.2	2146	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	16.8132801836092	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACTATCAGCAGAAGGAT	511	False	NA	NA	False	NA	NA	NA	16361927	16756668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708189_16716892_16717041_16718480_16718520_16734063_16734225_16756001
transcript_71232.known	chr2	-	2750	2	FSM	ENSMUSG00000053702.17	ENSMUST00000130725.2	2750	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGGAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	17736275	17732196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_17734275_17735603
transcript_71233.nnic	chr2	-	3464	2	NNC	ENSMUSG00000054057.3	novel	3217	2	NA	NA	40	6	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTACTTTGCTCTGAAT	NA	False	NA	-17	True	AATAAA	-2	NA	18033642	18029997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_18033050_18033230
transcript_71234.known	chr2	-	426	2	FSM	ENSMUSG00000054057.3	ENSMUST00000151857.2	426	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGACTCTAAAGGCGAGAA	NA	False	NA	NA	False	GGGGCT	-3	NA	18033682	18032784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_18033050_18033521
transcript_71235.nnic	chr2	-	3272	2	NNC	ENSMUSG00000054057.3	novel	3217	2	NA	NA	40	-186	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATGAGATAACTTCAGC	NA	False	NA	NA	False	AATAAA	-9	NA	18033642	18030189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_18033050_18033230
transcript_71237.known	chr2	-	2936	2	FSM	ENSMUSG00000054074.10	ENSMUST00000066885.6	2936	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATAAATATCACAATGA	2725	False	NA	-26	True	AATAAA	-14	NA	18053260	18050063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_18052220_18052480
transcript_71244.known	chr2	+	5063	24	FSM	ENSMUSG00000026743.17	ENSMUST00000114671.8	5063	24	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	74.1776083487481	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTCTGTGCCCTGCCTTC	4642	False	NA	12	True	AATAAA	-16	NA	18069446	18217199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_18069676_18069845_18070006_18075935_18076016_18097594_18097646_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
transcript_71247.nic	chr2	+	5037	23	NIC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	102	junction_1	47.2740384433549	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTCTGTGCCCTGCCTTC	4591	False	NA	12	True	AATAAA	-16	NA	18069395	18217199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
transcript_71249.known	chr2	+	3543	23	FSM	ENSMUSG00000026743.17	ENSMUST00000114680.9	3543	23	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	48.8940497317777	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATGGAATTCCTATATA	4693	False	NA	NA	False	NA	NA	NA	18069497	18215781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
transcript_7125.nic	chr1	-	3720	21	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	-17	8844	-17	0	5prime_fragment	FALSE	canonical	3	480	junction_16	74.1277781941426	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	180971786	180923546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_7126.nic	chr1	-	2012	14	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	-17	26838	-17	-17994	5prime_fragment	FALSE	canonical	3	480	junction_9	88.1404876440457	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTATGTGTATGAGTG	NA	False	NA	NA	False	ATTAAA	-15	NA	180971786	180941540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_71285.nic	chr2	+	1785	11	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	117	3132	combination_of_known_junctions	FALSE	canonical	3	102	junction_1	36.4082408253956	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAAAATGTTTCTCACC	4517	False	NA	NA	False	NA	NA	NA	18069321	18167533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127
transcript_71288.nic	chr2	+	1783	11	ISM	ENSMUSG00000026743.17	ENSMUST00000114680.9	3543	23	-148	48248	-97	3132	5prime_fragment	FALSE	canonical	3	88	junction_1	39.4177624935764	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAAAATGTTTCTCACC	4545	False	NA	NA	False	NA	NA	NA	18069349	18167533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127
transcript_7129.nic	chr1	-	805	7	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	-17	43654	-17	5362	5prime_fragment	FALSE	canonical	3	480	junction_2	118.928082843746	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGAATCTTCAAGAAGTA	NA	False	NA	NA	False	AAGAAA	-41	NA	180971786	180958356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_7131.nic	chr1	-	664	6	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	-17	47716	-17	1300	5prime_fragment	FALSE	canonical	3	480	junction_1	120.247078966601	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCCCTTGGACCTATCA	NA	False	NA	NA	False	AAGAAA	-5	NA	180971786	180962418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_71310.nic	chr2	+	1027	8	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	117	0	combination_of_known_junctions	FALSE	canonical	3	102	junction_1	41.7318945221537	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4517	False	NA	NA	False	NA	NA	NA	18069321	18131040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_71313.nic	chr2	+	1025	8	ISM	ENSMUSG00000026743.17	ENSMUST00000114680.9	3543	23	-148	84741	-97	0	5prime_fragment	FALSE	canonical	3	88	junction_1	45.5299856340493	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4545	False	NA	NA	False	NA	NA	NA	18069349	18131040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_71319.nnic	chr2	+	856	7	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	-64	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	75.3606145292236	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4578	False	NA	NA	False	NA	NA	NA	18069382	18131040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18127055_18127160_18128529_18128624_18130944
transcript_71320.nic	chr2	+	898	7	NIC	ENSMUSG00000026743.17	novel	825	7	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	69.7577156226384	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4591	False	NA	NA	False	NA	NA	NA	18069395	18131040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_71322.known	chr2	+	825	7	FSM	ENSMUSG00000026743.17	ENSMUST00000154041.8	825	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	71.9639184283037	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4690	False	NA	NA	False	NA	NA	NA	18069494	18131040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_18069676_18069845_18070006_18075935_18076016_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_71334.known	chr2	-	5497	12	FSM	ENSMUSG00000026740.13	ENSMUST00000166495.8	5497	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	8.9016666653772	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGTATGTATAATATT	NA	False	NA	NA	False	AATAAA	-21	NA	18397641	18218559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_18222137_18224261_18224711_18227523_18227573_18236514_18236635_18289433_18289598_18298764_18298856_18311783_18311878_18312725_18312824_18313594_18313761_18321168_18321216_18321709_18321812_18397101
transcript_71341.known	chr2	+	938	9	FSM	ENSMUSG00000051154.12	ENSMUST00000171845.8	938	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	140.855366866158	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTTTGGAGTTTGTGT	21	True	NA	36	True	AATAAA	-30	NA	18677194	18681041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_18677219_18677253_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
transcript_71342.known	chr2	+	935	8	FSM	ENSMUSG00000051154.12	ENSMUST00000061158.5	935	8	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_2	22.7909756576714	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTGGAGTTTGTGTG	60	False	NA	37	True	AATAAA	-31	NA	18677233	18681042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
transcript_71344.known	chr2	+	3594	10	FSM	ENSMUSG00000026739.14	ENSMUST00000028071.13	3594	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_8	5.61303597347337	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGTGGTTTGCTTCTTAA	4655	False	NA	10	True	AATAAA	-15	NA	18681828	18691440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_18682281_18686603_18686735_18687033_18687131_18687649_18687706_18687791_18687843_18687985_18688095_18688179_18688220_18688475_18688575_18688796_18688878_18688962
transcript_71348.known	chr2	-	3477	10	FSM	ENSMUSG00000026737.13	ENSMUST00000006912.12	3477	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	14.3139403690559	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGCTTCTCTGTGCTGG	NA	False	NA	0	True	AATAAA	-21	NA	19002937	18847065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_18849272_18850685_18850790_18852244_18852489_18857623_18857738_18870922_18870962_18877094_18877242_18893862_18894016_18911039_18911137_18912865_18912964_19002662
transcript_71356.nnic	chr2	-	2752	9	NIC	ENSMUSG00000026737.13	novel	3477	10	NA	NA	-174	-752	combination_of_known_splicesites	FALSE	canonical	3	18	junction_5	29.756301853557	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCCAGCATCAATTATGT	NA	False	NA	NA	False	ATTAAA	-20	NA	19003111	18847817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_18849272_18850685_18850790_18852244_18852489_18857623_18857738_18870922_18870962_18893862_18894016_18911039_18911137_18912865_18912964_19002662
transcript_71369.known	chr2	+	1196	5	FSM	ENSMUSG00000023094.15	ENSMUST00000023856.9	1196	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.0996688705415	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTCTCAGTCTGT	4784	False	NA	19	True	AATAAA	-20	NA	19376446	19399787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_19376591_19382972_19383074_19388051_19388129_19398018_19398167_19399061
transcript_71371.known	chr2	+	2832	1	FSM	ENSMUSG00000043415.6	ENSMUST00000052168.6	2832	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTCTGGGTAGAGTGGT	2500	False	NA	4	True	AATAAA	-15	NA	19662562	19665394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_19662600_19665400
transcript_71373.known	chr2	+	5898	19	FSM	ENSMUSG00000036617.18	ENSMUST00000114614.8	5898	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	66.3089476858883	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	NA	False	NA	22	True	AATAAA	-14	NA	20514857	20815335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_20515071_20524323_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790279_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712_20812836_20813520
transcript_71374.known	chr2	+	5931	19	FSM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	55.8687836600576	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	NA	False	NA	22	True	AATAAA	-14	NA	20514857	20815335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_20515071_20524323_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712_20812836_20813520
transcript_71381.nic	chr2	+	3294	12	ISM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	9524	24825	-220	0	internal_fragment	FALSE	canonical	3	169	junction_6	15.8979181546796	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATTTGGGGTTTTGTTG	4576	False	NA	26	True	AATATA	-27	NA	20524381	20790510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854
transcript_71382.nic	chr2	+	4063	12	ISM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	9524	24056	-220	769	internal_fragment	FALSE	canonical	3	169	junction_6	15.8979181546796	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACCAGGACAGGTGTTGA	4576	False	NA	NA	False	NA	NA	NA	20524381	20791279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854
transcript_71385.known	chr2	+	2507	8	FSM	ENSMUSG00000036617.18	ENSMUST00000146488.8	2507	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	70.2351734662679	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATTTGGGGTTTTGTTG	2634	False	NA	26	True	AATATA	-27	NA	20727188	20790510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_20727535_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854
transcript_71389.nnic	chr2	+	996	4	NNC	ENSMUSG00000036617.18	novel	3074	4	NA	NA	-220	5916	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	82.3097132110718	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGCCTTGGTTGTGATG	4576	False	NA	NA	False	NA	NA	NA	20524381	20673043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_20524739_20534769_20535054_20666708_20666908_20672887
transcript_71391.known	chr2	-	6339	26	FSM	ENSMUSG00000036591.17	ENSMUST00000141298.9	6339	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	33.6395957169524	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATTTTGCACTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	20973337	20853404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865919_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771_20886663_20888010_20888041_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442_20919623_20972140_20972532_20973294
transcript_71396.known	chr2	+	854	2	FSM	ENSMUSG00000075514.5	ENSMUST00000126967.2	854	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTTGCTACAATTGCCT	3609	False	NA	NA	False	NA	NA	NA	20973864	20974808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_20974195_20974284
transcript_71397.known	chr2	+	3899	3	FSM	ENSMUSG00000048550.18	ENSMUST00000054591.10	3899	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	4.5	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAGAAAAAAATTATCC	4784	False	NA	NA	False	NA	NA	NA	21210534	21219820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_21210657_21214695_21214853_21216200
transcript_71401.known	chr2	-	1545	1	FSM	ENSMUSG00000083563.2	ENSMUST00000117219.2	1545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGGAAGGAATCGAACCC	NA	False	NA	NA	False	AGTAAA	-5	NA	22479659	22478114	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_22478100_22479700
transcript_71402.known	chr2	+	5744	16	FSM	ENSMUSG00000026787.4	ENSMUST00000028123.4	5744	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.997775303139718	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGGCTACGGGTGCTC	NA	False	NA	15	True	AATAAA	-16	NA	22512216	22583886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_22512751_22513447_22513508_22513700_22513851_22514809_22515044_22519402_22519494_22519959_22520073_22524941_22525058_22540240_22540321_22556246_22556302_22558258_22558376_22559712_22559778_22563955_22564035_22571299_22571450_22574970_22575079_22575391_22575482_22580184
transcript_71408.known	chr2	-	3023	11	FSM	ENSMUSG00000058835.15	ENSMUST00000091394.13	3023	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	121.126545397778	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATATTGTTAAAGTAT	NA	False	NA	-2	True	AATAAA	-21	NA	22930149	22830375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22853225_22853241_22861094_22861272_22884534_22884703_22929960
transcript_7141.known	chr1	+	3268	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	0	0	0	0	multi-exon	FALSE	canonical	3	1843	junction_1	136.918543302213	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGTTCTATTGCTTG	NA	False	NA	NA	False	NA	NA	NA	180978495	180996559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
transcript_71411.known	chr2	-	2239	11	FSM	ENSMUSG00000058835.15	ENSMUST00000178908.2	2239	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	121.89257565578	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGATTTTGGCCTCTCCT	NA	False	NA	-5	True	TATAAA	-31	NA	22930231	22831244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861038_22861054_22861094_22861272_22884534_22884703_22929960
transcript_71412.known	chr2	-	3403	10	FSM	ENSMUSG00000058835.15	ENSMUST00000140164.8	3403	10	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	62.0443887296789	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930253	22830084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
transcript_71413.known	chr2	-	3360	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930207	22830084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
transcript_71415.known	chr2	-	2899	10	FSM	ENSMUSG00000058835.15	ENSMUST00000139038.8	2899	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	142.726968910297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATATTGTTAAAGTAT	NA	False	NA	-2	True	AATAAA	-21	NA	22930199	22830375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22847029_22847131_22850718_22850860_22852412_22852514_22853225_22853241_22861094_22861272_22884534_22884703_22929960
transcript_71416.known	chr2	-	3027	10	FSM	ENSMUSG00000058835.15	ENSMUST00000078977.14	3027	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_7	139.976188451227	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTTGGATATTGTTAA	NA	False	NA	-7	True	AATAAA	-16	NA	22930242	22830380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_22832060_22836587_22836774_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22853225_22853241_22861094_22861272_22884534_22884703_22929960
transcript_71421.known	chr2	-	3303	9	FSM	ENSMUSG00000058835.15	ENSMUST00000149719.8	3303	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	106.193220122567	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGGTTGAAATTATTTC	NA	False	NA	-22	True	AATAAA	-12	NA	22930253	22830097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_22832060_22836587_22836774_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
transcript_71430.nic	chr2	-	2108	9	NIC	ENSMUSG00000058835.15	novel	2239	11	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	102.292396467186	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGATTTTGGCCTCTCCT	NA	False	NA	-5	True	TATAAA	-31	NA	22930202	22831244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_22832060_22836587_22836774_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
transcript_71435.nic	chr2	+	1746	12	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-39	0	intron_retention	FALSE	canonical	3	18	junction_1	98.1149604012836	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5569	False	NA	19	True	AATAAA	-21	NA	22785494	22830278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_22785775_22789930_22789996_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
transcript_71438.known	chr2	+	1642	11	FSM	ENSMUSG00000026784.15	ENSMUST00000053729.14	1642	11	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_4	19.641792178923	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5608	False	NA	19	True	AATAAA	-21	NA	22785533	22830278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
transcript_71443.nnic	chr2	+	1609	10	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-81	0	intron_retention	FALSE	canonical	3	31	junction_8	77.9635875755748	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5527	False	NA	19	True	AATAAA	-21	NA	22785452	22830278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22825570_22825652_22829834
transcript_71445.known	chr2	+	1538	7	FSM	ENSMUSG00000026784.15	ENSMUST00000152170.8	1538	7	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_4	18.6696426199206	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTCTGGTCCTCTTTAC	5681	False	NA	NA	False	ATTAAA	-17	NA	22785606	22806225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426
transcript_71452.known	chr2	+	1986	13	FSM	ENSMUSG00000026781.18	ENSMUST00000227809.2	1986	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	25.6850583457041	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAGAAAGAATGCAAAAAC	NA	False	NA	NA	False	ATTAAA	-2	NA	22958212	23002917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_22958299_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
transcript_71456.known	chr2	+	3630	13	FSM	ENSMUSG00000026781.18	ENSMUST00000114529.10	3630	13	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	26.0302975182553	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTAGAAATCGACAGCT	NA	False	NA	NA	False	ATTAAA	-11	NA	22959079	23004427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
transcript_7146.known	chr1	+	531	4	FSM	ENSMUSG00000062169.14	ENSMUST00000193907.6	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	993.032504782978	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACAATTGAGGAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	180972257	180993813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180972467_180983423_180983537_180989639_180989781_180993745
transcript_71463.known	chr2	+	3802	14	FSM	ENSMUSG00000026781.18	ENSMUST00000226571.2	3802	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	40.4311087680392	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGTATTTTTTTAATGA	NA	False	NA	NA	False	ATTAAA	-29	NA	22958955	23004445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22970679_22970713_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
transcript_71464.known	chr2	+	3632	12	FSM	ENSMUSG00000026781.18	ENSMUST00000114523.10	3632	12	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_8	21.9175766290267	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTAACTGTATTGACT	NA	False	NA	NA	False	AATAAA	-17	NA	22959338	23004522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
transcript_71469.known	chr2	-	5590	12	FSM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	0	0	0	0	multi-exon	TRUE	canonical	3	112	junction_2	17.5310821963508	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTGGCTGTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	23046036	23005617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
transcript_7148.known	chr1	+	3127	4	FSM	ENSMUSG00000062169.14	ENSMUST00000111059.2	3127	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	804.702429473156	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGTTCTATTGCTTG	NA	False	NA	NA	False	NA	NA	NA	180978495	180996559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180993745
transcript_71480.known	chr2	-	1201	7	FSM	ENSMUSG00000026779.7	ENSMUST00000136207.2	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_4	13.2759180473518	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTAGTTGTGATACTGG	NA	False	NA	NA	False	TATAAA	-16	NA	23045909	23026695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
transcript_71482.nic	chr2	-	1212	4	ISM	ENSMUSG00000026779.7	ENSMUST00000136207.2	1201	7	-29	8083	-29	-8083	5prime_fragment	FALSE	canonical	3	131	junction_1	17.2497987105808	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAGAGAGA	NA	False	NA	NA	False	CATAAA	-25	NA	23045938	23034778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_23035465_23036053_23036194_23040999_23041138_23045690
transcript_71488.known	chr2	+	4707	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	0	0	0	0	multi-exon	TRUE	canonical	3	665	junction_5	65.7463325738674	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACATTCCAACTGAAGCAT	7073	False	NA	24	True	AATAAA	-26	NA	23046380	23089272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
transcript_715.nic	chr1	-	1422	4	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	-344	28578	-4	288	5prime_fragment	FALSE	canonical	3	122	junction_2	3.09120616516523	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGGCAGAAAAGAATGAAG	NA	False	NA	NA	False	AATAAA	-3	NA	30913006	30869997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_30870641_30876185_30876348_30902067_30902337_30912658
transcript_7153.known	chr1	-	7068	14	FSM	ENSMUSG00000038733.15	ENSMUST00000237749.2	7068	14	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_11	31.9711408328487	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTCGTTGCGTTCCATC	NA	False	NA	-3	True	AATAAA	-19	NA	181039566	181000792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036567_181036673_181036777_181036878_181038640
transcript_71539.known	chr2	+	2769	7	FSM	ENSMUSG00000026775.10	ENSMUST00000125004.8	2769	7	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_5	58.3430944214195	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGGAAAAAAAAAAAAAA	7222	False	NA	NA	False	NA	NA	NA	23046529	23067080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180
transcript_7154.known	chr1	-	6452	14	FSM	ENSMUSG00000038733.15	ENSMUST00000162963.8	6452	14	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_11	18.0616957141628	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAATTCTCGTTGCGTTC	NA	False	NA	-7	True	AATAAA	-15	NA	181039002	181000796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777_181036878_181038640
transcript_71541.known	chr2	-	1516	12	FSM	ENSMUSG00000026771.15	ENSMUST00000132827.8	1516	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	7.08391263228297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCGAAGGATTCCAATACAA	NA	False	NA	NA	False	NA	NA	NA	23461990	23401281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_23401473_23405016_23405071_23405159_23405303_23407840_23407964_23427339_23427396_23427472_23427651_23431530_23431628_23433208_23433337_23434757_23434910_23435164_23435287_23435455_23435592_23461854
transcript_71549.known	chr2	-	6595	11	FSM	ENSMUSG00000026771.15	ENSMUST00000132484.7	6595	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	7.44580418759451	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTTCTTGCTTGGATT	NA	False	NA	-2	True	AATAAA	-22	NA	23462116	23396231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_23401473_23405016_23405071_23405159_23405303_23407840_23407964_23427339_23427396_23427472_23427651_23433208_23433337_23434757_23434910_23435164_23435287_23435455_23435592_23461854
transcript_71561.known	chr2	+	4748	17	FSM	ENSMUSG00000026979.17	ENSMUST00000056641.15	4748	17	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	5.02338282435253	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGCTCGGGAACATTTT	NA	False	NA	NA	False	NA	NA	NA	24275343	24298741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24275475_24284033_24285053_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
transcript_71565.known	chr2	-	2560	12	FSM	ENSMUSG00000026976.16	ENSMUST00000028355.11	2560	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.899954085146515	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGTTTTATCTTGGGA	NA	False	NA	NA	False	AATAAA	-14	NA	24365611	24310571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_24311637_24312980_24313068_24319538_24319641_24325774_24325982_24326459_24326581_24330651_24330828_24331089_24331216_24331603_24331693_24332951_24333150_24334577_24334744_24365084_24365193_24365496
transcript_7157.known	chr1	-	2640	14	FSM	ENSMUSG00000038733.15	ENSMUST00000036329.12	2640	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_11	43.02703154747	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTATACATTTGGAATCT	NA	False	NA	-20	True	AATAAA	-34	NA	181038991	181004661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030790_181036615_181036673_181036777_181036878_181038640
transcript_71573.known	chr2	-	4615	27	FSM	ENSMUSG00000036893.18	ENSMUST00000091348.11	4615	27	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_26	45.6963867643122	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACGGTGCTGAATCTGGTG	9617	False	NA	NA	False	AATAAA	-16	NA	24809599	24681226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777079_24809565
transcript_71574.known	chr2	-	5953	27	FSM	ENSMUSG00000036893.18	ENSMUST00000147147.8	5953	27	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_23	50.1601134592868	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTCATTGTCTTTTTT	9590	False	NA	NA	False	AATAAA	-17	NA	24809626	24679939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753942_24767466_24767639_24774157_24774715_24777014_24777082_24809565
transcript_7158.nic	chr1	-	2724	14	NIC	ENSMUSG00000038733.15	novel	751	6	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	42.1032824199319	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTACAGATTGTTTTG	NA	False	NA	NA	False	AGTAAA	-21	NA	181039584	181007971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_181008214_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036567_181036673_181036777_181036878_181038640
transcript_71584.known	chr2	-	4539	26	FSM	ENSMUSG00000036893.18	ENSMUST00000114432.9	4539	26	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_18	57.4611660167108	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAACAAAATGATTT	9630	False	NA	NA	False	AATAAA	-25	NA	24809586	24681154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777082_24809565
transcript_71586.nic	chr2	-	4592	26	NIC	ENSMUSG00000036893.18	novel	4680	27	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_16	57.3307038156693	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAACAAAATGATTT	9571	False	NA	NA	False	AATAAA	-25	NA	24809645	24681154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777082_24809565
transcript_71587.known	chr2	-	4554	26	FSM	ENSMUSG00000036893.18	ENSMUST00000046227.12	4554	26	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_16	68.3400438981422	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAACAAAATGATTT	9630	False	NA	NA	False	AATAAA	-25	NA	24809586	24681154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753942_24767466_24767639_24774157_24774715_24777014_24777082_24809565
transcript_7159.nic	chr1	-	2676	14	NIC	ENSMUSG00000038733.15	novel	751	6	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	34.0406996222056	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTACAGATTGTTTTG	NA	False	NA	NA	False	AGTAAA	-21	NA	181039584	181007971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_181008214_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777_181036878_181038640
transcript_71594.known	chr2	-	3651	15	FSM	ENSMUSG00000036893.18	ENSMUST00000139000.4	3651	15	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_14	52.715689102496	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCCTGGATAAAAAACTCT	9625	False	NA	NA	False	NA	NA	NA	24809591	24725113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777079_24809565
transcript_716.known	chr1	-	2410	6	FSM	ENSMUSG00000048874.16	ENSMUST00000191245.7	2410	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	53.4475443776419	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGTGCCAAAAGTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	30913002	30854395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_30855666_30859161_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30912658
transcript_71600.nic	chr2	-	884	5	ISM	ENSMUSG00000036893.18	ENSMUST00000102938.10	4680	27	-24	72726	-1	10	5prime_fragment	FALSE	canonical	3	154	junction_1	51.4848278621965	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAGAATGGGAACCTATAG	9589	False	NA	NA	False	AAGAAA	-4	NA	24809627	24753894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_24753921_24767466_24767639_24774157_24774715_24777014_24777082_24809565
transcript_71601.known	chr2	-	884	5	FSM	ENSMUSG00000036893.18	ENSMUST00000150379.2	884	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	89.9583236838037	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAAACGAAGAATGG	9606	False	NA	NA	False	NA	NA	NA	24809610	24753904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_24753942_24767466_24767639_24774157_24774715_24777008_24777082_24809565
transcript_71605.known	chr2	-	1574	8	FSM	ENSMUSG00000026972.16	ENSMUST00000102935.10	1574	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	27.9642629082191	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9406	False	NA	-31	True	AATAAA	-17	NA	24825175	24815363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_24815689_24815767_24816207_24816283_24816458_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_71609.nic	chr2	-	1526	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	26	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	24.8445164976097	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGGCGAGTGGCTGG	9343	False	NA	-34	True	AATAAA	-14	NA	24825238	24815366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24825039
transcript_7161.known	chr1	-	333	1	FSM	ENSMUSG00000081214.4	ENSMUST00000117444.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	181069885	181069552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_181069600_181069900
transcript_71613.nic	chr2	-	1737	7	NIC	ENSMUSG00000026972.16	novel	1590	7	NA	NA	3	0	intron_retention	FALSE	canonical	3	75	junction_2	4.41273409829124	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGGCGAGTGGCTGG	9320	False	NA	-34	True	AATAAA	-14	NA	24825261	24815366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_24815689_24815767_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_71622.known	chr2	+	3903	6	FSM	ENSMUSG00000026974.12	ENSMUST00000028350.9	3903	6	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_1	25.9028955910338	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTTTTTCGAGACAG	NA	False	NA	NA	False	NA	NA	NA	24839803	24852087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24840060_24841484_24841545_24842597_24842705_24843247_24843389_24848047_24848229_24848929
transcript_71626.known	chr2	+	1103	6	FSM	ENSMUSG00000026974.12	ENSMUST00000148042.3	1103	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	356.686641185229	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTAGGACCTTTCTCATT	NA	False	NA	NA	False	NA	NA	NA	24840221	24849278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24840487_24841484_24841545_24842597_24842705_24843247_24843389_24848047_24848229_24848929
transcript_71631.nic	chr2	+	1850	9	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	33.0924368247489	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852412	24862175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_24852823_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_71635.nnic	chr2	+	1425	7	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	42.6122700117649	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852430	24862175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_24852638_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_71637.nic	chr2	+	1422	7	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	41.9076365356005	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852436	24862175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_24852638_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_71640.known	chr2	+	1554	8	FSM	ENSMUSG00000026975.11	ENSMUST00000126909.8	1554	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	38.473950901346	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTGTATGCATCTGT	NA	False	NA	34	True	ATTAAA	-37	NA	24852433	24862173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24852638_24853034_24853169_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_71641.known	chr2	+	1666	9	FSM	ENSMUSG00000026975.11	ENSMUST00000028351.9	1666	9	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	22.9945645751338	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852411	24862175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_71642.known	chr2	+	2296	7	FSM	ENSMUSG00000026975.11	ENSMUST00000146382.8	2296	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	23.8379948821204	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852477	24862175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_71643.known	chr2	-	776	2	FSM	ENSMUSG00000036850.5	ENSMUST00000045604.4	776	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTTTTGAATCAAGT	NA	False	NA	-3	True	ATTAAA	-21	NA	24865110	24864128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_24864694_24864899
transcript_71644.known	chr2	+	4574	35	FSM	ENSMUSG00000036833.17	ENSMUST00000045295.14	4574	35	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	7.94602248652754	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGCTATTTTACTCTG	NA	False	NA	10	True	AATAAA	-13	NA	24866044	24944069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24866326_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848_24928913_24929614_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
transcript_71648.known	chr2	+	2990	22	FSM	ENSMUSG00000036833.17	ENSMUST00000139643.8	2990	22	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6.38912057156574	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24866159	24929364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24866326_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848
transcript_71650.known	chr2	+	483	1	FSM	ENSMUSG00000084383.2	ENSMUST00000121309.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	145	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	24875995	24876478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24876000_24876500
transcript_71651.known	chr2	+	2922	15	FSM	ENSMUSG00000006476.20	ENSMUST00000006646.15	2922	15	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_11	1.80136003041693	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTGTGGGTCTTCTC	9531	False	NA	2	True	ATTAAA	-18	NA	24944395	24952893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24944684_24945009_24945072_24945647_24946149_24947112_24947189_24948264_24948334_24949032_24949086_24949616_24949707_24950150_24950276_24950490_24950575_24950703_24950738_24950825_24950897_24951070_24951151_24951273_24951377_24951504_24951581_24951683
transcript_71652.known	chr2	+	2824	14	FSM	ENSMUSG00000006476.20	ENSMUST00000074422.14	2824	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.21346070306741	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTGTGGGTCTTCTC	9560	False	NA	2	True	ATTAAA	-18	NA	24944424	24952893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24944684_24945009_24945072_24945647_24946149_24947112_24947189_24949032_24949086_24949616_24949707_24950150_24950276_24950490_24950575_24950703_24950738_24950825_24950897_24951070_24951151_24951273_24951377_24951504_24951581_24951683
transcript_71656.known	chr2	+	1571	3	FSM	ENSMUSG00000006476.20	ENSMUST00000141866.3	1571	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	9550	False	NA	NA	False	NA	NA	NA	24944414	24946887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_24944684_24945009_24945072_24945647
transcript_71657.known	chr2	+	2582	1	FSM	ENSMUSG00000078202.4	ENSMUST00000104999.4	2582	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGGTTTTAATTTTGGCA	7951	False	NA	NA	False	AATAAA	-33	NA	25070769	25073351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25070800_25073400
transcript_71658.known	chr2	-	3255	2	FSM	ENSMUSG00000059555.7	ENSMUST00000081869.7	3255	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCCACCTTCTTTTCTT	8262	False	NA	NA	False	AATAAA	-17	NA	25086898	25082977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25085938_25086603
transcript_71663.known	chr2	-	2637	13	FSM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	0	0	0	0	multi-exon	TRUE	canonical	3	539	junction_7	54.5501807716732	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGGAATCTGTTTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	25101501	25089723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
transcript_71676.known	chr2	-	2754	12	FSM	ENSMUSG00000013465.20	ENSMUST00000128876.8	2754	12	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_7	56.9757089026427	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGTGAGGAATCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	25101393	25089727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720
transcript_71678.known	chr2	-	1598	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	0	0	0	0	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	4183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCGCCTGTCCAATTCCT	NA	False	NA	-24	True	ATTAAA	-18	NA	25114714	25112171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
transcript_71684.known	chr2	-	831	2	FSM	ENSMUSG00000036752.5	ENSMUST00000145607.2	831	2	0	0	0	0	multi-exon	FALSE	canonical	3	1369	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAAAAGCTTGTGCCATT	NA	False	NA	NA	False	NA	NA	NA	25114666	25113534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25114245_25114545
transcript_71689.known	chr2	-	2336	14	FSM	ENSMUSG00000006471.19	ENSMUST00000114349.9	2336	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_3	18.4333117547694	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145421	25137240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
transcript_71693.nic	chr2	-	2419	14	NIC	ENSMUSG00000006471.19	novel	2336	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	48.1394670101744	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145418	25137240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25145040_25145228
transcript_71724.known	chr2	-	454	3	FSM	ENSMUSG00000006471.19	ENSMUST00000137355.2	454	3	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	13.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGTGAGGCTCAGACC	NA	False	NA	NA	False	NA	NA	NA	25145273	25141499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25141831_25144875_25144954_25145228
transcript_71726.known	chr2	-	2045	1	FSM	ENSMUSG00000115018.3	ENSMUST00000228627.3	2045	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTACCTCTGCCATCCTC	NA	False	NA	NA	False	AATAAA	-19	NA	25136875	25134830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25134800_25136900
transcript_71727.known	chr2	+	854	1	FSM	ENSMUSG00000078201.6	ENSMUST00000104998.5	854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGCTCTGAATTGCCAG	NA	False	NA	6	True	ATTAAA	-16	NA	25145450	25146304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25145400_25146300
transcript_71729.nnic	chr2	+	3326	5	NNC	ENSMUSG00000048707.10	novel	2787	4	NA	NA	-648	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	66.299981146302	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTTGCCTTCTTTAC	NA	False	NA	14	True	AATAAA	-16	NA	25151981	25159897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_25154566_25158843_25159058_25159144_25159252_25159367_25159469_25159577
transcript_71730.nnic	chr2	+	2814	4	NNC	ENSMUSG00000048707.10	novel	2787	4	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	71.1805216802087	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTTGCCTTCTTTAC	NA	False	NA	14	True	AATAAA	-16	NA	25152571	25159897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_25154566_25158843_25159027_25159144_25159252_25159367
transcript_71731.known	chr2	+	2787	4	FSM	ENSMUSG00000048707.10	ENSMUST00000114336.4	2787	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	10.4986771653491	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTTGCCTTCTTTAC	NA	False	NA	14	True	AATAAA	-16	NA	25152629	25159897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25154566_25158843_25159058_25159144_25159252_25159367
transcript_71735.known	chr2	-	845	3	FSM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	398.5	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162422	25161050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25161594_25161940_25162141_25162320
transcript_71738.known	chr2	-	530	2	FSM	ENSMUSG00000026966.7	ENSMUST00000127176.2	530	2	0	0	0	0	multi-exon	FALSE	canonical	3	707	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCATAACCAGTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	25162416	25161717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25162141_25162309
transcript_71740.known	chr2	-	1006	2	FSM	ENSMUSG00000026966.7	ENSMUST00000141470.2	1006	2	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATCCCCATGGCCTCTGG	NA	False	NA	-53	True	AAGAAA	-32	NA	25162450	25161097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25161594_25161940
transcript_71745.known	chr2	+	3004	13	FSM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	0	0	0	0	multi-exon	TRUE	canonical	3	410	junction_2	48.8355374929182	536	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTGTGTGGCATCTGTG	NA	False	NA	18	True	ATTAAA	-19	NA	25162489	25175927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25162690_25162926_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
transcript_71763.nic	chr2	-	3291	18	ISM	ENSMUSG00000026959.14	ENSMUST00000114318.10	3920	21	7540	0	-6158	0	3prime_fragment	FALSE	canonical	0	0	junction_1	7.78428903043448	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCGGGTTTTGTCTATTG	9834	False	NA	-4	True	NA	NA	NA	25201567	25181192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_25182141_25184449_25184561_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
transcript_71766.nic	chr2	-	3647	18	ISM	ENSMUSG00000026959.14	ENSMUST00000114310.10	4276	21	7540	0	-6158	0	3prime_fragment	FALSE	canonical	2	8	junction_2	6.39852924277042	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCGGGTTTTGTCTATTG	9834	False	NA	-4	True	NA	NA	NA	25201567	25181192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_25182497_25184449_25184561_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
transcript_71771.nic	chr2	-	3180	17	ISM	ENSMUSG00000026959.14	ENSMUST00000114317.10	3809	20	7540	0	-6158	0	3prime_fragment	FALSE	canonical	3	13	junction_1	5.11699069278028	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCGGGTTTTGTCTATTG	9834	False	NA	-4	True	NA	NA	NA	25201567	25181192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_25182141_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
transcript_71773.nic	chr2	-	3536	17	ISM	ENSMUSG00000026959.14	ENSMUST00000114308.10	4165	20	7540	0	-6158	0	3prime_fragment	FALSE	canonical	1	3	junction_1	6.67990222608086	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCGGGTTTTGTCTATTG	9834	False	NA	-4	True	NA	NA	NA	25201567	25181192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_25182497_25185803_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
transcript_71775.nic	chr2	-	2684	16	ISM	ENSMUSG00000026959.14	ENSMUST00000114318.10	3920	21	7540	4159	-6158	-3282	internal_fragment	FALSE	canonical	3	19	junction_2	4.55289895439037	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCGTGTGGATTTGTGGT	9834	False	NA	NA	False	NA	NA	NA	25201567	25185351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_25185950_25186036_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
transcript_71779.nic	chr2	-	1901	6	ISM	ENSMUSG00000026959.14	ENSMUST00000114318.10	3920	21	7540	11484	-6158	816	internal_fragment	FALSE	canonical	3	22	junction_5	4.58693797647189	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	9834	False	NA	NA	False	NA	NA	NA	25201567	25192676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
transcript_7178.known	chr1	-	3510	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	0	0	0	0	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	2272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	False	NA	-50	True	AATAAA	-33	NA	181669944	181642899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
transcript_71788.known	chr2	+	3755	13	FSM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_8	34.4394597647653	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCAGTGTTACTTT	3965	False	NA	33	True	ATTAAA	-21	NA	25222740	25242224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
transcript_71797.nic	chr2	+	4111	12	NIC	ENSMUSG00000036646.14	novel	3755	13	NA	NA	-12	0	intron_retention	FALSE	canonical	3	302	junction_8	32.9823393764572	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCAGTGTTACTTT	3953	False	NA	33	True	ATTAAA	-21	NA	25222728	25242224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238704_25239181_25239380_25239462_25239595_25240373
transcript_71812.known	chr2	+	2030	6	FSM	ENSMUSG00000036646.14	ENSMUST00000149464.8	2030	6	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_4	22.6327196774935	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAAATAAAATGACA	3998	False	NA	NA	False	NA	NA	NA	25222773	25234560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235
transcript_71814.known	chr2	-	1682	13	FSM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_10	27.0014145719977	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTAGTAGGATCCATG	9001	False	NA	-17	True	AATAAA	-17	NA	25246371	25242301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
transcript_71835.nic	chr2	-	2447	10	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	-26	0	intron_retention	FALSE	canonical	3	250	junction_7	29.6498079439161	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTAGTAGGATCCATG	8975	False	NA	-17	True	AATAAA	-17	NA	25246397	25242301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
transcript_71861.known	chr2	-	3349	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGAGTCCACGTGGTGA	NA	False	NA	NA	False	GATAAA	-18	NA	25255694	25249900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
transcript_71867.nic	chr2	-	1668	9	NIC	ENSMUSG00000026956.16	novel	3349	9	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	144.900342908497	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTCTGATTGTCTGTCT	NA	False	NA	-20	True	NA	NA	NA	25255686	25251505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_25251752_25252082_25252150_25252674_25252861_25253323_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
transcript_719.known	chr1	-	941	3	FSM	ENSMUSG00000048874.16	ENSMUST00000188780.2	941	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	46.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACTTCTCTCAGAGACTA	NA	False	NA	NA	False	NA	NA	NA	30912975	30870285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_30870641_30902067_30902337_30912658
transcript_71906.known	chr2	+	3121	7	FSM	ENSMUSG00000026955.14	ENSMUST00000028329.13	3121	7	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_3	10.077477638554	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAGGCCCTATTTAAAT	6657	False	NA	NA	False	AATAGA	-14	NA	25262332	25268225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25263011_25263427_25263530_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
transcript_71909.nnic	chr2	+	2357	7	NNC	ENSMUSG00000026955.14	novel	3121	7	NA	NA	-12	682	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	41.0423223297881	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCACGTCTGCATCTTT	6645	False	NA	4	True	NA	NA	NA	25262320	25267497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_25263011_25263427_25263530_25264963_25265077_25265744_25265844_25265979_25266088_25266175_25266287_25266363
transcript_71916.nic	chr2	+	2323	6	NIC	ENSMUSG00000026955.14	novel	3121	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	105	junction_2	6.41872261435249	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTGTATTTCTCATAA	6665	False	NA	6	True	AGTAAA	-15	NA	25262340	25266815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_25263011_25263427_25263530_25264963_25265844_25265979_25266088_25266175_25266287_25266363
transcript_71919.known	chr2	+	1600	6	FSM	ENSMUSG00000026955.14	ENSMUST00000114293.9	1600	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	40.9536323175369	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTGTATTTCTCATAA	6666	False	NA	6	True	AGTAAA	-15	NA	25262341	25266815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25263011_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
transcript_71927.known	chr2	+	1935	9	FSM	ENSMUSG00000015085.9	ENSMUST00000028328.3	1935	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.69096865730859	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGTGTCCATAGGGTGG	NA	False	NA	NA	False	AATAAA	-19	NA	25285885	25291333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25286102_25287407_25287526_25288012_25288164_25288302_25288463_25288543_25288772_25289293_25289549_25289628_25289749_25290575_25290711_25290781
transcript_71929.known	chr2	+	1485	9	FSM	ENSMUSG00000015094.17	ENSMUST00000071442.12	1485	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	4.24264068711928	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTCTGGGTTCACTGA	3126	False	NA	12	True	ATTAAA	-20	NA	25293082	25299506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297852_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
transcript_71933.known	chr2	+	8033	48	FSM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_14	9.25265307651151	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACCTGTGGGAGCCTGTG	NA	False	NA	11	True	AATAAA	-14	NA	25318714	25338552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25318848_25322007_25322102_25323109_25323222_25323305_25323470_25323693_25323822_25323975_25324087_25324320_25324540_25324901_25325270_25325510_25325671_25326379_25326509_25326600_25326766_25326841_25326939_25327256_25327431_25327499_25327603_25327676_25327792_25327904_25328096_25328242_25328394_25328469_25328675_25328812_25328978_25329078_25329260_25329338_25329552_25330536_25330734_25330821_25331005_25331199_25331385_25331490_25331612_25331886_25332124_25332202_25332410_25332661_25332765_25332846_25333167_25333240_25333455_25333540_25333647_25333737_25333850_25333938_25334000_25334081_25334257_25334336_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
transcript_71935.known	chr2	-	981	7	FSM	ENSMUSG00000047617.12	ENSMUST00000114261.9	981	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_6	3.94405318873308	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGTTGTGAAGATTGGC	5236	False	NA	-4	True	AATAAA	-32	NA	25351106	25349493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666_25350728_25350798
transcript_71937.known	chr2	-	917	6	FSM	ENSMUSG00000047617.12	ENSMUST00000125710.8	917	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	2.82842712474619	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTCCGTCAAATAAACT	5322	False	NA	-53	True	NA	NA	NA	25351020	25349542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666
transcript_71949.known	chr2	+	2388	9	FSM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	35.5176012703561	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390761	25395483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
transcript_71963.nic	chr2	+	2162	8	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	82.0069683450306	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390829	25395483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_25390899_25391947_25392164_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
transcript_71974.known	chr2	-	1150	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	2.38047614284762	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTTGTCGTTTTTTGTC	NA	False	NA	-1	True	ATTAAA	-19	NA	25390625	25388662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
transcript_71980.known	chr2	-	2151	11	FSM	ENSMUSG00000026942.14	ENSMUST00000114234.2	2151	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	38.6141165896619	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGAGTGGTGTTCATC	NA	False	NA	-18	True	ATTAAA	-13	NA	25436922	25408877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428856_25429097_25436873
transcript_71982.known	chr2	-	3044	11	FSM	ENSMUSG00000026942.14	ENSMUST00000028311.13	3044	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	20.6164982477626	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTTGTATTTGAC	NA	False	NA	NA	False	NA	NA	NA	25436952	25407993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428877_25429097_25436873
transcript_71987.known	chr2	+	722	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	0	0	0	0	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	1246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTCCTGGATTTTTCCT	NA	False	NA	17	True	NA	NA	NA	25447858	25452094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
transcript_71991.known	chr2	+	765	4	FSM	ENSMUSG00000015092.10	ENSMUST00000153008.8	765	4	0	0	0	0	multi-exon	FALSE	canonical	3	2578	junction_3	170.755836080515	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTTCTCATCTTTT	NA	False	NA	NA	False	NA	NA	NA	25447882	25451373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980
transcript_71992.known	chr2	-	937	3	FSM	ENSMUSG00000036504.7	ENSMUST00000039156.7	937	3	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	2.5	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5200	False	NA	-8	True	ATTAAA	-20	NA	25465236	25463441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25463712_25464199_25464325_25464694
transcript_71994.known	chr2	-	656	3	FSM	ENSMUSG00000036504.7	ENSMUST00000147096.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	365.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCACCTGCCAGGCCTTA	5546	False	NA	-80	True	GGGGCT	-34	NA	25464890	25463513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25463712_25464199_25464462_25464694
transcript_71997.known	chr2	-	3230	15	FSM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_7	28.5093074669466	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGTGTGACTCTTTT	3218	False	NA	-6	True	CATAAA	-15	NA	25498533	25473029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25474001_25474114_25474174_25474787_25474957_25475319_25475549_25475635_25475846_25476879_25477031_25477286_25477640_25478620_25478725_25482309_25482416_25482778_25482920_25486444_25486537_25488156_25488210_25491362_25491411_25492432_25492568_25498124
transcript_72007.known	chr2	-	2190	14	FSM	ENSMUSG00000015087.15	ENSMUST00000146012.8	2190	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	89.6567418599781	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAGAGGTACCTACTCTG	3274	False	NA	NA	False	NA	NA	NA	25498477	25474122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25474174_25474787_25474957_25475319_25475549_25475635_25475846_25476879_25477031_25477286_25477640_25478620_25478725_25482309_25482416_25482778_25482920_25486444_25486537_25488156_25488205_25491362_25491411_25492432_25492568_25498124
transcript_72019.known	chr2	-	795	5	FSM	ENSMUSG00000026939.13	ENSMUST00000142087.2	795	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	9.85837207656518	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTCTGTGGGTGAAGC	NA	False	NA	31	True	ATTAAA	-14	NA	25512017	25510078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619_25511687_25511945
transcript_72022.known	chr2	+	983	1	FSM	ENSMUSG00000049086.9	ENSMUST00000061483.9	983	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGATTCTTTTTTATTGTT	NA	False	NA	27	True	TATAAA	-23	NA	25596750	25597733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_25596800_25597700
transcript_72024.known	chr2	-	7981	17	FSM	ENSMUSG00000026933.18	ENSMUST00000114167.9	7981	17	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	28.655006107136	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGGGAAGAAAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	25873294	25816849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825574_25825861_25826071_25826526_25826664_25827957_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25846258_25846340_25855674_25855837_25856697_25856961_25872793
transcript_72029.nic	chr2	-	3034	11	ISM	ENSMUSG00000026933.18	ENSMUST00000183461.8	5090	17	-9	9304	-9	-490	5prime_fragment	FALSE	canonical	3	81	junction_7	13.6194713553794	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGAGGCGCTGTCCGCAC	NA	False	NA	NA	False	AAGAAA	-3	NA	25873303	25829041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25846258_25846340_25855674_25855837_25856697_25856961_25872793
transcript_72039.known	chr2	-	1852	10	FSM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_2	68.2632884002073	1537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTTACTTCATGGC	NA	False	NA	-3	True	AATAAA	-20	NA	25911759	25888554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
transcript_72046.nic	chr2	-	1751	9	NIC	ENSMUSG00000036352.17	novel	1852	10	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	240.477617201685	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTTACTTCATGGC	NA	False	NA	-3	True	AATAAA	-20	NA	25911797	25888554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_25889080_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
transcript_72054.known	chr2	-	778	6	FSM	ENSMUSG00000036352.17	ENSMUST00000136750.3	778	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	333.659946652277	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTCCACTTTGAGACT	NA	False	NA	NA	False	NA	NA	NA	25911544	25896538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25911408
transcript_72060.nic	chr2	-	2862	7	NIC	ENSMUSG00000026932.15	novel	6378	6	NA	NA	-7	2087	intron_retention	FALSE	canonical	2	11	junction_5	12.0611866009204	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGAGACTAGTGTCCCTG	8892	False	NA	NA	False	NA	NA	NA	26012837	25948988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554_25980173_25980253_25980495_26012700
transcript_72062.known	chr2	-	6675	6	FSM	ENSMUSG00000026932.15	ENSMUST00000114159.9	6675	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	16.2775919595006	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTCCTGACCTTTGCTTG	1074	False	NA	0	True	AATAAA	-16	NA	25982189	25945546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554_25980495_25981762
transcript_72063.nnic	chr2	-	3002	6	NNC	ENSMUSG00000026932.15	novel	6675	6	NA	NA	11574	2087	intron_retention	FALSE	canonical	1	2	junction_5	16.6685332288117	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGAGACTAGTGTCCCTG	4103	False	NA	NA	False	NA	NA	NA	26001221	25948988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554_25980495_26001025
transcript_72064.known	chr2	-	6378	6	FSM	ENSMUSG00000026932.15	ENSMUST00000028300.6	6378	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	3.79473319220206	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTCCTGACCTTTGCTTG	8899	False	NA	0	True	AATAAA	-16	NA	26012830	25945546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554_25980495_26012700
transcript_72070.known	chr2	-	2483	2	FSM	ENSMUSG00000087679.3	ENSMUST00000133808.2	2483	2	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	0	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGAGTGATTGCTTACG	NA	False	NA	-6	True	ATTAAA	-19	NA	26030533	26026825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26028926_26030150
transcript_72071.known	chr2	-	2559	13	FSM	ENSMUSG00000036327.19	ENSMUST00000036187.9	2559	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	31.8210054663408	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTTTCAGTTTTTTGAAA	NA	False	NA	NA	False	AATAAA	-21	NA	26127537	26099136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26099806_26101285_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110920_26111056_26112232_26112379_26114852_26114944_26115160_26115267_26116249_26116299_26118358_26118460_26127054
transcript_72075.nic	chr2	-	4094	12	NIC	ENSMUSG00000036327.19	novel	2559	13	NA	NA	-60	-5	intron_retention	FALSE	canonical	3	117	junction_2	7.1269480445526	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGTTGTTTCAGTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	26127597	26099141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110920_26111056_26112232_26112379_26114852_26114944_26115160_26115267_26116249_26116299_26118358_26118460_26127054
transcript_72076.nic	chr2	-	3046	12	ISM	ENSMUSG00000036327.19	ENSMUST00000036187.9	2559	13	-60	1053	-60	-1053	5prime_fragment	FALSE	canonical	3	117	junction_2	7.1269480445526	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTAAACTTGTGCCTAAAG	NA	False	NA	-4	True	AATACA	-19	NA	26127597	26100189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110920_26111056_26112232_26112379_26114852_26114944_26115160_26115267_26116249_26116299_26118358_26118460_26127054
transcript_72080.known	chr2	-	1982	3	FSM	ENSMUSG00000026934.16	ENSMUST00000127035.2	1982	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGCTTGTGTTTTTAGT	4377	False	NA	NA	False	AATAAA	-19	NA	26092878	26090227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26091524_26092105_26092275_26092361
transcript_72082.known	chr2	+	3384	14	FSM	ENSMUSG00000026930.16	ENSMUST00000066936.9	3384	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	5.66521619677599	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTCTGTTGGAATT	NA	False	NA	NA	False	AATAAA	-15	NA	26205526	26238249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26205733_26212425_26212648_26213519_26213656_26213900_26214044_26214424_26214549_26214809_26214926_26215348_26215505_26216225_26216335_26217303_26217428_26229647_26229719_26230416_26230597_26234613_26234771_26235162_26235372_26236818
transcript_72083.known	chr2	+	3127	13	FSM	ENSMUSG00000026930.16	ENSMUST00000078616.12	3127	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	5.58954877924467	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTCTGTTGGAATT	NA	False	NA	NA	False	AATAAA	-15	NA	26205603	26238249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26205733_26212425_26212648_26213519_26213656_26213900_26214044_26214424_26214549_26214809_26214926_26215348_26215505_26216225_26216335_26217303_26217428_26229647_26229719_26234613_26234771_26235162_26235372_26236818
transcript_72091.known	chr2	+	977	4	FSM	ENSMUSG00000026930.16	ENSMUST00000147873.8	977	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	7.25718035235908	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCCTGCCCTAGGCCGGG	NA	False	NA	NA	False	NA	NA	NA	26232300	26237287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26232443_26234613_26234771_26235162_26235372_26236818
transcript_72092.known	chr2	-	2916	3	FSM	ENSMUSG00000075467.5	ENSMUST00000028295.9	2916	3	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	24.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCGGGGCGGCCACCAT	NA	False	NA	NA	False	AATAAA	-18	NA	26242122	26238132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26240571_26241346_26241487_26241784
transcript_72094.known	chr2	-	2766	2	FSM	ENSMUSG00000075467.5	ENSMUST00000125848.2	2766	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCGGGGCGGCCACCAT	NA	False	NA	NA	False	AATAAA	-18	NA	26242112	26238132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26240571_26241784
transcript_72097.known	chr2	-	4459	24	FSM	ENSMUSG00000036281.14	ENSMUST00000149850.8	4459	24	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_21	20.3013218115665	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAGCAATGTATAGCC	NA	False	NA	-14	True	AATAAA	-20	NA	26270644	26252787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26253033_26253649_26253781_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268172_26268292_26268505_26268649_26270560
transcript_72099.known	chr2	-	4363	23	FSM	ENSMUSG00000036281.14	ENSMUST00000035427.11	4363	23	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_10	11.6217948571845	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAATGTATAGCCTT	NA	False	NA	-12	True	AATAAA	-22	NA	26270665	26252785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26253033_26253649_26253781_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
transcript_72102.nic	chr2	-	4410	23	NIC	ENSMUSG00000036281.14	novel	4368	23	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	13.1962303658192	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATAGCCTTTGGTGAT	NA	False	NA	-5	True	AATAAA	-29	NA	26270681	26252778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_26253033_26253649_26253805_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
transcript_72112.known	chr2	-	1880	13	FSM	ENSMUSG00000026928.15	ENSMUST00000028294.7	1880	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	11.0789465002569	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTGGTTGGATATGCA	NA	False	NA	NA	False	AATAAA	-17	NA	26250930	26242198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26242424_26242496_26242574_26242952_26243027_26244368_26244418_26244841_26244884_26245344_26245537_26246769_26246896_26247196_26247341_26247476_26247657_26247722_26248028_26248825_26248964_26249375_26249572_26250798
transcript_7213.nnic	chr1	-	4328	15	NNC	ENSMUSG00000022995.17	novel	3385	15	NA	NA	-2	843	intron_retention	FALSE	non_canonical	0	0	junction_1	105.627377403507	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCGACATTGGCTCATGC	5641	False	NA	-18	True	NA	NA	NA	181847547	181731121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_181731962_181732010_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749334_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
transcript_72130.nnic	chr2	-	2173	10	NNC	ENSMUSG00000026927.18	novel	2193	10	NA	NA	-19	0	intron_retention	FALSE	canonical	2	11	junction_9	120.630852061717	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGACTGTCTTGTCATT	NA	False	NA	-4	True	AATAAA	-12	NA	26279347	26272814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26278927_26279040_26279160
transcript_72131.known	chr2	-	2193	10	FSM	ENSMUSG00000026927.18	ENSMUST00000114102.10	2193	10	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_9	111.566621850404	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	-3	True	AATAAA	-13	NA	26279328	26272813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26278927_26279078_26279160
transcript_72136.nic	chr2	-	2275	9	ISM	ENSMUSG00000026927.18	ENSMUST00000114102.10	2193	10	0	1	0	0	intron_retention	FALSE	canonical	3	96	junction_8	85.196739227508	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGACTGTCTTGTCATT	NA	False	NA	-4	True	AATAAA	-12	NA	26279328	26272814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26278927
transcript_72137.known	chr2	-	2031	9	FSM	ENSMUSG00000026927.18	ENSMUST00000028293.12	2031	9	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_8	70.8147892392543	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	-3	True	AATAAA	-13	NA	26279316	26272813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26279160
transcript_72138.nic	chr2	-	2456	9	NIC	ENSMUSG00000026927.18	novel	2193	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	27	junction_7	132.397070870167	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGACTGTCTTGTCATT	NA	False	NA	-4	True	AATAAA	-12	NA	26279331	26272814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278597_26279078_26279160
transcript_72140.known	chr2	-	2099	9	FSM	ENSMUSG00000026927.18	ENSMUST00000114100.10	2099	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	137.145907704167	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	-3	True	AATAAA	-13	NA	26279303	26272813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278927_26279078_26279160
transcript_72149.nic	chr2	-	2536	8	NIC	ENSMUSG00000026927.18	novel	2193	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	27	junction_7	113.093784451811	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGACTGTCTTGTCATT	NA	False	NA	-4	True	AATAAA	-12	NA	26279328	26272814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278597
transcript_72151.known	chr2	-	1955	8	FSM	ENSMUSG00000026927.18	ENSMUST00000077983.13	1955	8	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_7	82.5556089640708	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	-3	True	AATAAA	-13	NA	26279309	26272813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26279160
transcript_7216.nic	chr1	-	4581	15	NIC	ENSMUSG00000022995.17	novel	4231	15	NA	NA	-2	843	intron_retention	FALSE	canonical	0	0	junction_11	153.943337044538	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCGACATTGGCTCATGC	5641	False	NA	-18	True	NA	NA	NA	181847547	181731121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749526_181751124_181751406_181758242_181758328_181772605_181772618_181783958_181784137_181789318_181789485_181847094
transcript_7221.known	chr1	-	11229	14	FSM	ENSMUSG00000022995.17	ENSMUST00000193703.6	11229	14	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_9	54.2155461448742	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTATTCATTTTTC	5962	False	NA	0	True	AATAAA	-24	NA	181847226	181723948	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749334_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
transcript_72219.known	chr2	+	3135	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	1361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	644	False	NA	19	True	AATAAA	-16	NA	26279350	26287134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
transcript_72235.known	chr2	+	1638	11	FSM	ENSMUSG00000026926.15	ENSMUST00000114093.2	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	100.774054200474	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTGTCTTTT	653	False	NA	NA	False	NA	NA	NA	26279359	26283953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529
transcript_72246.known	chr2	-	4147	10	FSM	ENSMUSG00000026925.17	ENSMUST00000145701.8	4147	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	7.99228022593531	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATGGTGACTCTTACT	986	False	NA	NA	False	ATTAAA	-31	NA	26299212	26286260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26287984_26288567_26288705_26289244_26289361_26289424_26289587_26290047_26290156_26290384_26290505_26290897_26291023_26291612_26291711_26292111_26292236_26297778
transcript_72256.known	chr2	-	8797	31	FSM	ENSMUSG00000026924.18	ENSMUST00000114082.9	8797	31	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	26.343373613365	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATGGCTTCCTTTGTGTT	NA	False	NA	0	True	AATAAA	-27	NA	26335226	26299442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26300966_26302847_26302926_26303690_26303751_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398_26332083_26335086
transcript_72258.known	chr2	-	9488	34	FSM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_31	9.72382644510991	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGAGTGTGGTTTGGTTC	NA	False	NA	0	True	AATAAA	-34	NA	26393834	26347914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361_26355579_26356478_26356628_26357640_26358043_26358243_26358816_26359616_26359730_26359812_26360071_26360285_26360419_26360833_26361019_26361163_26361318_26362082_26362285_26362795_26363025_26363692_26363846_26364132_26364253_26366085_26366200_26366359_26366506_26366958_26367152_26367891_26368003_26368081_26368316_26368618_26368733_26369458_26369573_26369882_26370069_26370235_26370392_26370985_26371220_26371582_26371706_26374279_26374619_26375198_26375462_26391892_26391972_26393509
transcript_72259.known	chr2	+	600	2	FSM	ENSMUSG00000086714.2	ENSMUST00000151521.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGCATGTAGTTTTTTT	5502	False	NA	NA	False	AATACA	-19	NA	26335935	26348007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26336213_26347684
transcript_72261.known	chr2	+	536	3	FSM	ENSMUSG00000086714.2	ENSMUST00000139144.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAATTCTTGTCCTCTTA	5520	False	NA	NA	False	NA	NA	NA	26335953	26349402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26336213_26347684_26347793_26349233
transcript_72264.nic	chr2	+	1153	9	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	105.177751330783	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	143	False	NA	12	True	AATAAA	-12	NA	26476612	26482693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482254_26482429
transcript_72265.nic	chr2	+	1161	9	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	104.879692982007	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	143	False	NA	12	True	AATAAA	-12	NA	26476612	26482693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482262_26482429
transcript_72266.known	chr2	+	1163	9	FSM	ENSMUSG00000026921.21	ENSMUST00000239075.2	1163	9	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	46.4239970273995	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	172	False	NA	12	True	AATAAA	-12	NA	26476641	26482693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
transcript_72270.nnic	chr2	+	1154	9	NNC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_1	105.198547399667	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	148	False	NA	12	True	AATAAA	-12	NA	26476617	26482693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_26476694_26479089_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
transcript_72276.nic	chr2	+	1127	8	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_6	112.260811487885	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	143	False	NA	12	True	AATAAA	-12	NA	26476612	26482693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26482129_26482293_26482429
transcript_72282.nic	chr2	-	1473	6	NIC	ENSMUSG00000026922.14	novel	1273	6	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	216	junction_5	206.37577377202	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9864	False	NA	1	True	TATAAA	-45	NA	26493961	26483068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26493673
transcript_72283.known	chr2	-	1489	6	FSM	ENSMUSG00000026922.14	ENSMUST00000028286.12	1489	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	292.487674954006	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9481	False	NA	1	True	TATAAA	-45	NA	26494344	26483068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
transcript_72284.known	chr2	-	1273	6	FSM	ENSMUSG00000026922.14	ENSMUST00000131940.8	1273	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	210.357219985433	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9602	False	NA	1	True	TATAAA	-45	NA	26494223	26483068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494135
transcript_72286.known	chr2	+	1622	5	FSM	ENSMUSG00000036186.6	ENSMUST00000074240.4	1622	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	8.55496931613434	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGGTATGTGGATCCTTT	2435	False	NA	17	True	AATAAA	-17	NA	26518468	26526509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26518712_26522615_26522751_26524799_26524908_26524998_26525176_26525550
transcript_72289.known	chr2	-	1145	5	FSM	ENSMUSG00000026922.14	ENSMUST00000140386.8	1145	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	320.696897396903	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACATTGCATCATTTCA	9396	False	NA	NA	False	NA	NA	NA	26494429	26484514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
transcript_72296.known	chr2	-	748	5	FSM	ENSMUSG00000036160.14	ENSMUST00000142131.2	748	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	123.331615979034	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGGCAGAAAGTGAAAGG	NA	False	NA	NA	False	NA	NA	NA	26792802	26782686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792599
transcript_72297.known	chr2	-	2971	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	26.2154534578367	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTTTTTATTTGTGT	NA	False	NA	NA	False	TTTAAA	-3	NA	26792891	26780446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
transcript_72300.nic	chr2	-	592	4	ISM	ENSMUSG00000036160.14	ENSMUST00000114043.2	894	5	-68	2222	-39	-319	5prime_fragment	FALSE	canonical	3	289	junction_3	18.8738502225228	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAAGAGGAAGGAGCGCC	NA	False	NA	5	True	NA	NA	NA	26792930	26783005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_26783080_26789348_26789438_26789740_26789945_26792705
transcript_72301.known	chr2	-	973	4	FSM	ENSMUSG00000015776.13	ENSMUST00000015920.12	973	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	17.7951304200522	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCCTGACTGCCAGTG	NA	False	NA	NA	False	NA	NA	NA	26800581	26795599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26796006_26798104_26798314_26799004_26799086_26800304
transcript_72303.known	chr2	-	3506	3	FSM	ENSMUSG00000015776.13	ENSMUST00000102899.10	3506	3	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	2.5	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTCTGTCTTTCTTGAT	NA	False	NA	-4	True	AATAAA	-18	NA	26800689	26795273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26798314_26799004_26799086_26800304
transcript_72308.known	chr2	+	914	8	FSM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	0	0	0	0	multi-exon	FALSE	canonical	3	2861	junction_1	795.089880684786	1077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800775	26803330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
transcript_72321.known	chr2	+	920	7	FSM	ENSMUSG00000062647.17	ENSMUST00000143678.8	920	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1889.33392143016	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26801017	26803330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26801139_26801433_26801584_26802030_26802172_26802304_26802458_26802682_26802814_26802999_26803070_26803176
transcript_72325.known	chr2	-	1173	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_4	27.1834048639974	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806542	26803394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
transcript_72326.known	chr2	-	1151	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806480	26803394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
transcript_7233.nic	chr1	-	1831	9	ISM	ENSMUSG00000022995.17	ENSMUST00000111024.10	3572	16	-53	13871	-53	1180	intron_retention	FALSE	canonical	3	260	junction_4	53.0471488394994	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGACAGAAATGTGAGTG	5580	False	NA	NA	False	AATAGA	-13	NA	181847608	181745835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_181745881_181746002_181746149_181746889_181747195_181749222_181749334_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
transcript_72331.known	chr2	-	860	8	FSM	ENSMUSG00000015790.17	ENSMUST00000129822.8	860	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	122.602393691051	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTCCTGCTGCCTGCTA	NA	False	NA	NA	False	NA	NA	NA	26806332	26803588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805762_26805966_26806019_26806268
transcript_72341.known	chr2	+	1203	6	FSM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_5	33.4388995034227	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATATGTGTATCATTGTT	NA	False	NA	37	True	CATAAA	-32	NA	26806378	26810195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
transcript_72343.known	chr2	-	3281	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	0	0	0	0	multi-exon	TRUE	canonical	3	778	junction_1	38.262252939418	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGTGGTCCTATATGG	NA	False	NA	-2	True	AATAAA	-18	NA	26823940	26810051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
transcript_72347.known	chr2	+	2519	5	FSM	ENSMUSG00000014873.16	ENSMUST00000126947.8	2519	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_4	33.741665637606	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26806516_26806716_26806872_26807439_26809068_26809203_26809371_26809738
transcript_72349.known	chr2	-	737	5	FSM	ENSMUSG00000014867.10	ENSMUST00000153641.8	737	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	353.786217227297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGCTCTTGGCCCAGG	NA	False	NA	NA	False	NA	NA	NA	26823395	26811973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26816780_26816968_26823286
transcript_72355.known	chr2	-	2278	8	FSM	ENSMUSG00000052406.15	ENSMUST00000114020.10	2278	8	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	23.9344342497821	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGAGTGTGTGGAAGTT	NA	False	NA	-9	True	AATAAA	-11	NA	26854398	26843577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
transcript_72358.nnic	chr2	-	2044	7	NIC	ENSMUSG00000052406.15	novel	2281	8	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_4	59.1629106789042	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGTGTGGAAGTTCAT	NA	False	NA	-6	True	AATAAA	-14	NA	26854355	26843574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850614_26850753_26852394_26852736_26854063
transcript_72360.known	chr2	-	1121	7	FSM	ENSMUSG00000052406.15	ENSMUST00000136710.2	1121	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	74.3611681816076	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGTACTGCAAACCGGC	NA	False	NA	NA	False	NA	NA	NA	26854291	26844552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26844609_26845506_26845582_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
transcript_72361.nic	chr2	-	1083	6	ISM	ENSMUSG00000052406.15	ENSMUST00000114020.10	2278	8	45	2767	-17	0	5prime_fragment	FALSE	canonical	3	152	junction_3	27.6506781110337	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGGACACTCAGAAATTC	NA	False	NA	NA	False	AAAAAG	-5	NA	26854353	26846344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
transcript_72366.known	chr2	+	1648	6	FSM	ENSMUSG00000015488.15	ENSMUST00000114006.8	1648	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	34.2718543414272	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTCTGCCTGTCAC	NA	False	NA	41	True	AGTAAA	-18	NA	26899937	26911101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26900118_26904104_26904178_26905495_26905622_26908384_26908493_26908899_26908992_26910032
transcript_72367.known	chr2	+	2689	5	FSM	ENSMUSG00000015488.15	ENSMUST00000114007.8	2689	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	7.54983443527075	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTCTGCCTGTCAC	NA	False	NA	41	True	AGTAAA	-18	NA	26899937	26911101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26900118_26904104_26904178_26905495_26905622_26908384_26908493_26908899
transcript_72370.known	chr2	+	2194	3	FSM	ENSMUSG00000015488.15	ENSMUST00000114004.8	2194	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	8	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTTCCCATTCAGATT	NA	False	NA	NA	False	ATTAAA	-18	NA	26899937	26907436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_26900118_26904104_26904178_26905495
transcript_72371.known	chr2	-	2138	10	FSM	ENSMUSG00000036067.13	ENSMUST00000045702.6	2138	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	0.916245694581702	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGAGTGGGCTCTCTTCC	NA	False	NA	NA	False	AATAAA	-29	NA	26918010	26911374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_26912082_26912730_26912877_26913099_26913262_26913546_26913656_26914194_26914348_26914596_26914806_26915234_26915335_26915912_26916120_26917152_26917316_26917828
transcript_72373.nnic	chr2	-	5157	27	NIC	ENSMUSG00000009621.19	novel	5221	28	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_23	9.47466256756571	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGGTTAGCCTTCTGTG	NA	False	NA	-2	True	AATAAA	-19	NA	27317068	27152115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_27154224_27157241_27157397_27158910_27159035_27160139_27160228_27161786_27161904_27163699_27163753_27165011_27165087_27167227_27167356_27168608_27168631_27169202_27169220_27171912_27172002_27172300_27172403_27173320_27173431_27175644_27175778_27176450_27176537_27178617_27178705_27181361_27181431_27181820_27181917_27182681_27182782_27186134_27186236_27187679_27187749_27189385_27189485_27192019_27192123_27208939_27209009_27226691_27226751_27276501_27276619_27316287
transcript_72374.known	chr2	+	509	2	FSM	ENSMUSG00000109946.2	ENSMUST00000209262.2	509	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGAGTGGTGTGGAGTCA	NA	False	NA	NA	False	NA	NA	NA	27332514	27333116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_27332831_27332923
transcript_72375.known	chr2	+	1898	1	FSM	ENSMUSG00000109946.2	ENSMUST00000209765.2	1898	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTTTCTCATTTTTCTT	NA	False	NA	3	True	AATAAA	-15	NA	27332335	27334233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_27332300_27334200
transcript_72376.known	chr2	-	5289	13	FSM	ENSMUSG00000026918.17	ENSMUST00000113941.9	5289	13	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_5	87.0507514805779	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAATAAAAAGGGAAAGAAG	NA	False	NA	5	True	NA	NA	NA	27365685	27335611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27343411_27343463_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
transcript_72377.known	chr2	-	5272	12	FSM	ENSMUSG00000026918.17	ENSMUST00000077737.13	5272	12	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_7	30.2258714644446	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTGTGGTGCTCT	NA	False	NA	-6	True	AATAAA	-14	NA	27365698	27335590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
transcript_72378.known	chr2	-	5419	12	FSM	ENSMUSG00000026918.17	ENSMUST00000028282.15	5419	12	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_11	79.362022268289	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTGTGGTGCTCT	NA	False	NA	-6	True	AATAAA	-14	NA	27365410	27335590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365153
transcript_7238.known	chr1	-	774	3	FSM	ENSMUSG00000022995.17	ENSMUST00000192497.2	774	3	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_2	31	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAAATAAAAGA	5947	False	NA	NA	False	NA	NA	NA	181847241	181783675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_181784137_181789318_181789485_181847094
transcript_72381.nic	chr2	-	1722	10	ISM	ENSMUSG00000026918.17	ENSMUST00000138693.8	2221	12	-25	3737	-6	-10	5prime_fragment	FALSE	canonical	2	24	junction_2	94.5983060428295	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAAGAAGGAAAAGGAAAA	NA	False	NA	-14	True	NA	NA	NA	27365691	27343017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_27343087_27343411_27343463_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
transcript_72388.nic	chr2	-	1801	9	ISM	ENSMUSG00000026918.17	ENSMUST00000077737.13	5272	12	-123	7427	-123	-10	5prime_fragment	FALSE	canonical	3	192	junction_4	32.1548985381699	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAAGAAGGAAAAGGAAAA	NA	False	NA	-14	True	NA	NA	NA	27365821	27343017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
transcript_7239.known	chr1	-	1890	1	FSM	ENSMUSG00000022995.17	ENSMUST00000192768.2	1890	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	181740162	181738272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_181738300_181740200
transcript_72390.known	chr2	-	2893	8	FSM	ENSMUSG00000026918.17	ENSMUST00000130932.2	2893	8	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	33.5747718699986	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGAAAAGAAGAAGAAA	NA	False	NA	-4	True	NA	NA	NA	27365665	27343007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
transcript_72393.nic	chr2	-	539	2	ISM	ENSMUSG00000026918.17	ENSMUST00000130932.2	2893	8	-156	10892	-123	4	5prime_fragment	FALSE	canonical	3	266	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGCCCTTAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	27365821	27353899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_27354206_27365588
transcript_72394.known	chr2	-	2791	12	FSM	ENSMUSG00000026918.17	ENSMUST00000164296.8	2791	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	79.8942482854111	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	27354128	27337854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_27338382_27338411_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900
transcript_7240.known	chr1	+	1367	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	0	0	0	0	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATAGGTTTCTTT	NA	False	NA	26	True	AATAAA	-34	NA	181952314	181959972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_181952541_181956248_181956318_181958900
transcript_72402.known	chr2	+	2890	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	1296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTCCATATAAGTTTG	NA	False	NA	33	True	AATAAA	-19	NA	27405168	27426547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
transcript_72403.known	chr2	+	4905	10	FSM	ENSMUSG00000015846.16	ENSMUST00000077257.12	4905	10	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	15.024260216787	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCCTGTGTTGGGGAGT	NA	False	NA	28	True	AATATA	-18	NA	27567212	27652969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_27567473_27627310_27627577_27631064_27631216_27631775_27631956_27638623_27638794_27642323_27642454_27644234_27644368_27646210_27646303_27647772_27647879_27649552
transcript_72409.known	chr2	+	8406	66	FSM	ENSMUSG00000026837.17	ENSMUST00000028280.14	8406	66	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_13	12.1052973880063	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGACTAGCTGTCTTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	27776436	27929526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_27776937_27812028_27812197_27818053_27818268_27819390_27819554_27839638_27839771_27840638_27840771_27841298_27841539_27842284_27842459_27842980_27843038_27848233_27848276_27848496_27848560_27850398_27850474_27852073_27852167_27854079_27854137_27855262_27855317_27855608_27855663_27856941_27856996_27858150_27858205_27859756_27859811_27861458_27861504_27863159_27863214_27863879_27863925_27864455_27864510_27864704_27864750_27865566_27865621_27870483_27870529_27871048_27871103_27875060_27875106_27876732_27876787_27879150_27879259_27880049_27880104_27882005_27882060_27885717_27885763_27885872_27885927_27886880_27886926_27887574_27887629_27888737_27888792_27891581_27891636_27892494_27892603_27893872_27893963_27894053_27894108_27895190_27895299_27897759_27897868_27899119_27899174_27900035_27900090_27900181_27900290_27901096_27901151_27901253_27901362_27902686_27902741_27903471_27903580_27904118_27904173_27904381_27904436_27905865_27905920_27906450_27906505_27907106_27907215_27907292_27907347_27907437_27907492_27908452_27908561_27909948_27910003_27910779_27910816_27912292_27912347_27914616_27914873_27915604_27915718_27918978_27919048_27922602_27922837_27926881
transcript_72413.known	chr2	+	2686	6	FSM	ENSMUSG00000026833.19	ENSMUST00000100244.10	2686	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	17.749366185867	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGATTTGCTTATTGTCT	6595	False	NA	NA	False	AATAAA	-16	NA	28083104	28120748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28083475_28098089_28098240_28102543_28102700_28104620_28104841_28112562_28112670_28119065
transcript_72414.known	chr2	+	2757	6	FSM	ENSMUSG00000026833.19	ENSMUST00000028177.11	2757	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	5.85149553533112	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGATTTGCTTATTGTCT	203	False	NA	NA	False	AATAAA	-16	NA	28095670	28120748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28096112_28098089_28098240_28102543_28102700_28104620_28104841_28112562_28112670_28119065
transcript_72415.known	chr2	+	1102	4	FSM	ENSMUSG00000026833.19	ENSMUST00000152415.2	1102	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	19.3045763140937	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGTGGTGTTCTGAG	6494	False	NA	3	True	AATAAA	-11	NA	28083003	28104437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28083475_28098089_28098240_28102543_28102700_28104112
transcript_72418.known	chr2	+	617	4	FSM	ENSMUSG00000035829.14	ENSMUST00000128199.8	617	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	2.16024689946929	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATCAGCACGCTTCAGAG	NA	False	NA	NA	False	NA	NA	NA	28336811	28340518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28336909_28337896_28337995_28338703_28338921_28340313
transcript_7242.known	chr1	+	823	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTTTCTTGCCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	181952301	181959484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_181952541_181958900
transcript_72424.nnic	chr2	-	962	4	NNC	ENSMUSG00000026831.17	novel	812	3	NA	NA	-192	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	63.8957484240279	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCACGCCTCTTATT	NA	False	NA	0	True	ATTAAA	-19	NA	28356536	28352012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_28352447_28355148_28355228_28356045_28356125_28356166
transcript_72426.known	chr2	-	445	3	FSM	ENSMUSG00000026831.17	ENSMUST00000127683.2	445	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	71	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGAGCTTAGTGACCGG	NA	False	NA	NA	False	NA	NA	NA	28356328	28352359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_28352443_28355148_28355228_28356045
transcript_72431.known	chr2	+	2080	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTCTAGAACTTTGAAC	NA	False	NA	28	True	NA	NA	NA	28358077	28361190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
transcript_72432.known	chr2	+	2429	4	FSM	ENSMUSG00000035772.12	ENSMUST00000123533.8	2429	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	269.775215071116	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	15	True	NA	NA	NA	28358093	28361177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28359341_28359434
transcript_72435.known	chr2	+	2504	3	FSM	ENSMUSG00000035772.12	ENSMUST00000146332.2	2504	3	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_2	8	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	15	True	NA	NA	NA	28358101	28361177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28358155_28358254_28358963_28359434
transcript_7244.known	chr1	-	2048	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	0	0	0	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAGTGTCACTGGAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	182110369	182103336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_182104459_182106540_182107284_182110186
transcript_72444.known	chr2	+	3590	18	FSM	ENSMUSG00000026821.17	ENSMUST00000028170.15	3590	18	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	10.8097738677858	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGGTTTTACTGTTTTT	NA	False	NA	25	True	ATTAAA	-26	NA	28403337	28443093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28403573_28430722_28430834_28432301_28432496_28432866_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439301_28439545_28440460_28440576_28442103
transcript_72446.nic	chr2	+	3647	18	NIC	ENSMUSG00000026821.17	novel	3590	18	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_15	17.0647048685037	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCCTGGTCACTGTGGTT	NA	False	NA	14	True	ATTAAA	-15	NA	28403095	28443082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_28403573_28430722_28430834_28432301_28432496_28432866_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439475_28439545_28440460_28440576_28442103
transcript_72448.nic	chr2	+	3785	18	NIC	ENSMUSG00000026821.17	novel	3590	18	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	12.5469361015481	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCCTGGTCACTGTGGTT	NA	False	NA	14	True	ATTAAA	-15	NA	28403095	28443082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_28403573_28430722_28430834_28432301_28432496_28432902_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439301_28439545_28440460_28440576_28442103
transcript_72449.nic	chr2	+	3443	18	NIC	ENSMUSG00000026821.17	novel	3590	18	NA	NA	-74	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_15	18.0952879603167	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCCTGGTCACTGTGGTT	NA	False	NA	14	True	ATTAAA	-15	NA	28403263	28443082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_28403573_28430722_28430834_28432301_28432496_28432902_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439475_28439545_28440460_28440576_28442103
transcript_72453.known	chr2	+	3102	18	FSM	ENSMUSG00000026821.17	ENSMUST00000100241.10	3102	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	16.9096929677323	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCCAGCAGGGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	28423553	28442648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28423746_28430722_28430834_28432301_28432496_28432866_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439301_28439545_28440460_28440576_28442103
transcript_72454.known	chr2	+	3683	18	FSM	ENSMUSG00000026821.17	ENSMUST00000113893.8	3683	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	17.9576587741977	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACGGCCTGGTCACTGT	NA	False	NA	10	True	ATTAAA	-11	NA	28423366	28443078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28423746_28430722_28430834_28432301_28432496_28432902_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439301_28439545_28440460_28440576_28442103
transcript_7246.known	chr1	-	1405	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	0	0	0	0	multi-exon	FALSE	canonical	3	1179	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	182110369	182106061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_182107284_182110186
transcript_72467.known	chr2	-	2667	12	FSM	ENSMUSG00000026816.15	ENSMUST00000113889.9	2667	12	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_2	52.8098100077803	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGGTGTTTGATGCCCT	NA	False	NA	-49	True	AATAAA	-22	NA	28473201	28456322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_28457190_28457619_28457815_28458496_28458640_28459303_28459387_28460430_28460529_28460624_28460706_28461124_28461240_28462207_28462313_28463388_28463585_28467887_28468087_28469529_28469750_28472836
transcript_7247.known	chr1	-	4925	5	FSM	ENSMUSG00000047539.10	ENSMUST00000051431.10	4925	5	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	16.5604951616792	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTTTCATTCTTTCGA	NA	False	NA	-3	True	AATAAA	-17	NA	182169183	182140666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_182144851_182145374_182145571_182153818_182153958_182157438_182157549_182168887
transcript_72476.known	chr2	+	7674	23	FSM	ENSMUSG00000026812.17	ENSMUST00000028155.12	7674	23	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	11.5017066645932	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGCAGTGTTGATGGAG	3452	False	NA	8	True	AATAAA	-16	NA	28531248	28581179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28531303_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568963_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
transcript_7248.known	chr1	-	747	5	FSM	ENSMUSG00000047539.10	ENSMUST00000194213.2	747	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	73.5505778359355	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGCAAAACCCGTCCAGA	NA	False	NA	NA	False	NA	NA	NA	182169194	182144808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_182144851_182145374_182145524_182153818_182153958_182157438_182157549_182168887
transcript_72481.known	chr2	+	7682	23	FSM	ENSMUSG00000026812.17	ENSMUST00000113867.9	7682	23	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_16	12.8165698535106	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGCAGTGTTGATGGAG	3458	False	NA	8	True	AATAAA	-16	NA	28531254	28581179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28531332_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568978_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
transcript_72496.known	chr2	+	3640	7	FSM	ENSMUSG00000026812.17	ENSMUST00000124507.2	3640	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	16.7572538190348	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAGAGAAAAAGAAAA	3469	False	NA	NA	False	ACTAAA	-7	NA	28531265	28557971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28531303_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019
transcript_72497.known	chr2	-	699	5	FSM	ENSMUSG00000026809.16	ENSMUST00000124840.2	699	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	1.22474487139159	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGGCTTGGTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	28589695	28582095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_28582165_28582923_28583072_28583635_28583839_28585918_28586096_28589593
transcript_72500.known	chr2	+	1567	13	FSM	ENSMUSG00000026807.9	ENSMUST00000074156.7	1567	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.54405625374562	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAGCCTTCTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	28590175	28703177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28590287_28592700_28592786_28599938_28599989_28602286_28602401_28606428_28606498_28623818_28623901_28624385_28624458_28625514_28625716_28629544_28629677_28632671_28632762_28649953_28650096_28699671_28699753_28702839
transcript_72502.known	chr2	-	6941	5	FSM	ENSMUSG00000035666.15	ENSMUST00000037117.6	6941	5	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	18.8215302247187	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAGGGGATTTTTTTTT	NA	False	NA	-5	True	AATAAA	-19	NA	28730298	28712316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561_28725386_28729894
transcript_72511.known	chr2	+	3271	20	FSM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_10	16.137738156191	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGGACTCAGCAGAGAAA	NA	False	NA	18	True	AATAAA	-19	NA	28730470	28795583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_28730873_28734849_28735107_28735209_28735286_28736005_28736050_28737452_28737524_28738297_28738363_28744782_28744828_28746206_28746249_28747131_28747197_28748747_28748868_28748999_28749107_28749880_28750090_28750727_28750905_28753727_28753788_28764142_28764194_28765701_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
transcript_72514.nnic	chr2	+	3254	20	NNC	ENSMUSG00000026806.16	novel	3271	20	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_15	30.2260184008025	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGGACTCAGCAGAGAAA	NA	False	NA	18	True	AATAAA	-19	NA	28730462	28795583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_28730873_28734849_28735107_28735209_28735286_28736005_28736050_28737452_28737524_28738297_28738363_28744782_28744828_28746206_28746249_28747131_28747197_28748747_28748868_28748999_28749107_28749880_28750090_28750727_28750905_28753727_28753788_28764142_28764194_28765726_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
transcript_72518.known	chr2	-	1042	6	FSM	ENSMUSG00000079502.9	ENSMUST00000157048.4	1042	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	3.07245829914744	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCTGTCTGTATAAAGG	NA	False	NA	NA	False	NA	NA	NA	28945078	28845381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_28845637_28846006_28846109_28852643_28852750_28874307_28874534_28875813_28875914_28944825
transcript_72522.nnic	chr2	+	3974	13	NNC	ENSMUSG00000026803.18	novel	4160	12	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	11.9745099644574	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTGTGAAATGACTTGAA	NA	False	NA	21	True	AATAAA	-23	NA	28950246	28977668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_28950316_28954630_28955921_28957014_28957242_28959903_28960090_28961309_28961389_28963900_28964032_28964585_28964821_28969400_28969491_28971023_28971090_28973544_28973631_28974648_28974827_28976118_28976918_28977130
transcript_72526.nic	chr2	+	1005	2	ISM	ENSMUSG00000026803.18	ENSMUST00000142786.8	5336	11	-31	22062	-27	-16042	5prime_fragment	FALSE	canonical	3	53	junction_1	0	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTTCAGGAGCCAGGAAT	NA	False	NA	NA	False	AAAAAG	-15	NA	28950246	28955566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_28950316_28954630
transcript_72527.nic	chr2	+	1158	2	ISM	ENSMUSG00000026803.18	ENSMUST00000142786.8	5336	11	-31	21909	-27	-15889	5prime_fragment	FALSE	canonical	3	53	junction_1	0	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTCCAAGAAAAAGAAGCACA	NA	False	NA	NA	False	NA	NA	NA	28950246	28955719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_28950316_28954630
transcript_7253.known	chr1	+	4361	18	FSM	ENSMUSG00000026510.11	ENSMUST00000117245.2	4361	18	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	10.65761582562	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTCCTGGTTTTCCTT	NA	False	NA	8	True	AATAAA	-21	NA	182236736	182289997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_182237016_182256458_182256607_182259123_182259238_182262916_182263000_182264462_182264565_182268401_182268577_182269186_182269369_182269697_182269863_182270197_182270427_182271889_182271998_182272225_182272375_182273838_182274302_182275965_182276745_182280219_182280358_182281262_182281397_182283261_182283429_182286324_182286525_182289251
transcript_72535.nic	chr2	+	2465	10	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	-11	37196	-11	14826	5prime_fragment	FALSE	canonical	3	142	junction_8	20.4341761653255	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATTAGAAACATAAAATTC	NA	False	NA	NA	False	AAGAAA	-31	NA	29014992	29035287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191_29020403_29023933_29024044_29029231_29029452_29030280_29030401_29033901_29034074_29034189_29034278_29034614
transcript_72536.nic	chr2	+	2493	10	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	85	37072	85	14950	5prime_fragment	FALSE	canonical	3	142	junction_8	20.4341761653255	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTATTGTTTGGAAAATT	NA	False	NA	NA	False	CATAAA	-6	NA	29015088	29035411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191_29020403_29023933_29024044_29029231_29029452_29030280_29030401_29033901_29034074_29034189_29034278_29034614
transcript_72537.nic	chr2	+	2984	10	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	85	36581	85	15441	5prime_fragment	FALSE	canonical	3	142	junction_8	20.4341761653255	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGAAAAGTACTTTGGTA	NA	False	NA	NA	False	CATAAA	-9	NA	29015088	29035902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191_29020403_29023933_29024044_29029231_29029452_29030280_29030401_29033901_29034074_29034189_29034278_29034614
transcript_72538.nic	chr2	+	3094	10	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	169	36387	169	15635	5prime_fragment	FALSE	canonical	3	142	junction_8	20.4341761653255	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGATAAAGAGTGAGGAGTT	NA	False	NA	NA	False	AAGAAA	-1	NA	29015172	29036096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191_29020403_29023933_29024044_29029231_29029452_29030280_29030401_29033901_29034074_29034189_29034278_29034614
transcript_72543.nnic	chr2	+	2227	9	NIC	ENSMUSG00000043535.14	novel	10970	26	NA	NA	115	14826	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	54.1548705104167	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATTAGAAACATAAAATTC	NA	False	NA	NA	False	AAGAAA	-31	NA	29015118	29035287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_29015562_29016885_29017076_29020191_29020403_29023933_29024044_29029231_29029452_29030280_29030401_29033901_29034074_29034189_29034278_29034614
transcript_72550.known	chr2	+	1254	8	FSM	ENSMUSG00000026799.16	ENSMUST00000028139.11	1254	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	14.0393034305954	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	NA	False	NA	32	True	AATAAA	-20	NA	29236830	29414805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
transcript_72553.known	chr2	+	1686	5	FSM	ENSMUSG00000026799.16	ENSMUST00000113830.11	1686	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	68.8853213681986	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCTAGCATCTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	29236844	29368445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29367344
transcript_72556.known	chr2	+	6402	24	FSM	ENSMUSG00000039844.21	ENSMUST00000102872.11	6402	24	0	0	0	0	multi-exon	TRUE	canonical	3	225	junction_2	42.1435569818812	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGTTACCATAGCAATAG	NA	False	NA	NA	False	ATTAAA	-6	NA	29509781	29630990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29510076_29569144_29569282_29569748_29569863_29576116_29576296_29579118_29579276_29589008_29589098_29589697_29589851_29590197_29590319_29590679_29590864_29592204_29592691_29597209_29597413_29612235_29612322_29614784_29614897_29616217_29616294_29620539_29620625_29622838_29622932_29623588_29623775_29624211_29624297_29624436_29624532_29625813_29625893_29625995_29626098_29626583_29626682_29627338_29627468_29627931
transcript_72558.known	chr2	+	4205	24	FSM	ENSMUSG00000039844.21	ENSMUST00000238899.2	4205	24	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	80.1360138660296	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCAGCCAGCAGGTTCCTA	NA	False	NA	NA	False	NA	NA	NA	29533826	29628987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29533927_29569144_29569282_29569748_29569863_29576116_29576296_29579118_29579276_29589008_29589098_29589697_29589851_29590197_29590319_29590679_29590864_29592204_29592691_29597209_29597413_29612235_29612322_29614784_29614897_29616217_29616294_29620539_29620625_29622838_29622932_29623588_29623775_29624211_29624297_29624436_29624532_29625813_29625893_29625995_29626098_29626583_29626682_29627338_29627468_29627931
transcript_72560.nic	chr2	+	5655	23	NIC	ENSMUSG00000039844.21	novel	6241	26	NA	NA	8	0	intron_retention	FALSE	canonical	3	94	junction_2	58.96679272801	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGATGCCATGTCTGTGT	NA	False	NA	7	True	AATAAA	-14	NA	29509789	29630365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_29510076_29569144_29569282_29576116_29576296_29579118_29579276_29589008_29589098_29589697_29589851_29590197_29590319_29590679_29590864_29592204_29592691_29597209_29597413_29612235_29612322_29614784_29614897_29616217_29616294_29620539_29620625_29622838_29622932_29623588_29623775_29624211_29624297_29624436_29624532_29625813_29625893_29625995_29626098_29626583_29626682_29627338_29627468_29627931
transcript_72575.nnic	chr2	-	2971	4	NNC	ENSMUSG00000079497.5	novel	1091	4	NA	NA	3034	1727	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	10.4243305140746	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAATGTTAAAGGA	NA	False	NA	NA	False	AATAAA	-1	NA	29638663	29633203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_29635352_29636461_29636606_29637219_29637663_29638427
transcript_72579.known	chr2	-	1091	4	FSM	ENSMUSG00000079497.5	ENSMUST00000129574.3	1091	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	6.12825877028341	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGATCTGGCTACAGTCAG	NA	False	NA	NA	False	NA	NA	NA	29641697	29634930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29635352_29636461_29636606_29637219_29637663_29641614
transcript_72585.nnic	chr2	-	2393	10	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-5	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	69.5021093915612	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	-2	True	TATAAA	-27	NA	29677688	29666117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_29666232_29666269_29666544_29666698_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_72591.nnic	chr2	-	2262	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-11	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	81.6692070183126	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	-2	True	TATAAA	-27	NA	29677694	29666117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_29666232_29666269_29666544_29666698_29667969_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_72592.known	chr2	-	3408	8	FSM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_2	23.9267589931935	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29678514	29666121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_72594.nnic	chr2	-	2441	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-15	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	57.2362155894325	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	-2	True	TATAAA	-27	NA	29677698	29666117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_29666232_29666386_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_72596.nnic	chr2	-	2383	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	0	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	57.2362155894325	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	-2	True	TATAAA	-27	NA	29677683	29666117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_29666388_29666585_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_72598.nnic	chr2	-	2380	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-4	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	57.2362155894325	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	-2	True	TATAAA	-27	NA	29677676	29666117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_29666505_29666698_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_726.known	chr1	-	2851	6	FSM	ENSMUSG00000117310.3	ENSMUST00000076587.6	2851	6	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_5	787.975024984929	1533	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCCTTTTCCTAGTTCA	NA	False	NA	NA	False	AATAAA	-24	NA	30988838	30980660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985718_30988629
transcript_72607.known	chr2	+	860	7	FSM	ENSMUSG00000026798.11	ENSMUST00000176348.8	860	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	47.2666784203088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGCCTTTCTCTCCACAC	NA	False	NA	NA	False	AAAACA	-43	NA	29678231	29686614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680543_29685392_29685523_29685947_29686042_29686419
transcript_72608.known	chr2	+	1991	7	FSM	ENSMUSG00000026798.11	ENSMUST00000028137.10	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	15.3884877605162	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTAAAATGAAGCCGG	NA	False	NA	NA	False	NA	NA	NA	29678270	29687755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680572_29685392_29685523_29685947_29686042_29686419
transcript_72611.known	chr2	-	744	7	FSM	ENSMUSG00000039826.14	ENSMUST00000177467.8	744	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	60.8041025662651	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCGGAACTGCAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	29677634	29667768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29667969_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_72613.known	chr2	-	3930	7	FSM	ENSMUSG00000039826.14	ENSMUST00000156846.8	3930	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	39.677869566464	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGACTGGTGTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	29677672	29664695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
transcript_72616.nic	chr2	-	1075	7	ISM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	820	2288	-11	196	5prime_fragment	FALSE	canonical	3	126	junction_1	24.0791518861349	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGCTGGGTCTCTGGCA	NA	False	NA	NA	False	NA	NA	NA	29677694	29668409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_72619.known	chr2	-	763	6	FSM	ENSMUSG00000039826.14	ENSMUST00000176312.8	763	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	70.3380409167045	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGTCTCAAGGACCCAAG	NA	False	NA	NA	False	NA	NA	NA	29677646	29667699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29667969_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
transcript_72621.known	chr2	-	806	6	FSM	ENSMUSG00000039826.14	ENSMUST00000177133.8	806	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	43.1879612855249	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGAAACAGAGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	29677683	29668605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
transcript_72622.nic	chr2	-	2033	6	ISM	ENSMUSG00000039826.14	ENSMUST00000177467.8	744	7	-64	641	-15	196	5prime_fragment	FALSE	canonical	3	134	junction_3	19.239542614106	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGCTGGGTCTCTGGCA	NA	False	NA	NA	False	NA	NA	NA	29677698	29668409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_72631.known	chr2	-	1035	7	FSM	ENSMUSG00000039826.14	ENSMUST00000113807.10	1035	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	64.3810272259356	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGGTCTCTTCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	29677660	29651235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29651701_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_72633.known	chr2	+	4054	13	FSM	ENSMUSG00000059316.3	ENSMUST00000080065.3	4054	13	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	13.3562303397661	482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGACCCAGAGTGAGGAT	NA	False	NA	NA	False	TATAAA	-14	NA	29692645	29707534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29692973_29694171_29694339_29695627_29696023_29697367_29697527_29699673_29699744_29699847_29699940_29700872_29700983_29701197_29701408_29701580_29701708_29702276_29702415_29702563_29702729_29702799_29702947_29705587
transcript_72645.known	chr2	+	681	6	FSM	ENSMUSG00000069020.10	ENSMUST00000147325.2	681	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	146.238708965855	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGGTGTTCCTGTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	29717372	29733433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732473_29732559_29732732_29732782_29733114
transcript_72648.known	chr2	+	377	5	FSM	ENSMUSG00000069020.10	ENSMUST00000149379.8	377	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.989795564182	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTCCACACTGCACGGC	7963	False	NA	NA	False	NA	NA	NA	29710086	29733157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29710219_29722703_29722775_29731413_29731496_29732732_29732782_29733114
transcript_7265.known	chr1	-	3225	21	FSM	ENSMUSG00000026509.16	ENSMUST00000068505.10	3225	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	16.2692962355475	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCACCATGCCTTGTTT	NA	False	NA	-6	True	AATAAA	-13	NA	182345089	182294824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_182295801_182297743_182297803_182298243_182298361_182300085_182300165_182300488_182300558_182301446_182301512_182304815_182304874_182306112_182306179_182307270_182307308_182309011_182309224_182310100_182310113_182311767_182311938_182314108_182314270_182315279_182315355_182316558_182316645_182317529_182317614_182318431_182318601_182319626_182319761_182320316_182320436_182339771_182339842_182344682
transcript_72652.known	chr2	+	2196	5	FSM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	41.2158949921023	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGTTGTT	NA	False	NA	14	True	AATAAA	-24	NA	29717353	29735014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733114
transcript_72660.known	chr2	+	497	4	FSM	ENSMUSG00000069020.10	ENSMUST00000156944.8	497	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	149.455307329278	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCAGCCGCCTGAGTCCA	NA	False	NA	NA	False	NA	NA	NA	29717353	29733386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29717448_29731413_29731496_29732732_29732782_29733114
transcript_72664.nic	chr2	+	2687	12	NIC	ENSMUSG00000039787.14	novel	599	4	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	6.67547627297666	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACAGCTGAGCCTCTTT	NA	False	NA	19	True	AATAAA	-30	NA	29759153	29772852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_29759358_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
transcript_72665.known	chr2	+	2715	12	FSM	ENSMUSG00000039787.14	ENSMUST00000047521.7	2715	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_10	4.78288961380578	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACAGCTGAGCCTCTTT	NA	False	NA	19	True	AATAAA	-30	NA	29759505	29772852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29759738_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
transcript_72670.known	chr2	+	3959	22	FSM	ENSMUSG00000026790.20	ENSMUST00000046571.14	3959	22	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	346.4391129144	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7303	False	NA	14	True	AATAAA	-14	NA	29779906	29821758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29779934_29780782_29781015_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_72679.nic	chr2	+	3825	21	NIC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	193.045616370846	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7147	False	NA	13	True	AATAAA	-13	NA	29779750	29821757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_72683.known	chr2	+	3807	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113759.9	3807	21	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	298.874656001475	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7225	False	NA	13	True	AATAAA	-13	NA	29779828	29821757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802577_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_72687.known	chr2	+	3082	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113757.8	3082	21	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	283.670455810964	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTTTATTTTATTT	7203	False	NA	NA	False	NA	NA	NA	29779806	29821107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29779934_29782197_29782289_29783049_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_72702.nic	chr2	+	3671	20	NIC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	269.578043114865	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7147	False	NA	13	True	AATAAA	-13	NA	29779750	29821757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_72707.nic	chr2	+	3728	20	NIC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	268.155761574078	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7147	False	NA	13	True	AATAAA	-13	NA	29779750	29821757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_7271.known	chr1	+	1898	9	FSM	ENSMUSG00000038576.16	ENSMUST00000153348.8	1898	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	5.55512151082224	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATCCTGCTAGTCCCAC	NA	False	NA	NA	False	NA	NA	NA	182591576	182722797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986_182686176_182714904_182715097_182716332_182716478_182719447_182719831_182722763
transcript_72722.nic	chr2	+	2327	17	NIC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	172.1394783308	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7147	False	NA	13	True	AATAAA	-17	NA	29779750	29812551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_72727.known	chr2	+	2305	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113755.8	2305	17	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_4	168.994082736645	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7226	False	NA	13	True	AATAAA	-17	NA	29779829	29812551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_72733.known	chr2	+	2364	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113763.8	2364	17	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	425.292234087339	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7193	False	NA	13	True	AATAAA	-17	NA	29779796	29812551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29779934_29780777_29781015_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_72742.nic	chr2	+	2173	16	NIC	ENSMUSG00000026790.20	novel	2364	17	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	278.954476572791	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7147	False	NA	13	True	AATAAA	-17	NA	29779750	29812551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_72743.known	chr2	+	2249	16	FSM	ENSMUSG00000026790.20	ENSMUST00000113767.8	2249	16	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	277.041625432393	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7128	False	NA	13	True	AATAAA	-17	NA	29779731	29812551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_7275.known	chr1	-	4984	10	FSM	ENSMUSG00000030768.13	ENSMUST00000003035.12	4984	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	20.4420288428002	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTCTCCGTCGTTCT	NA	False	NA	2	True	AATAAA	-34	NA	183003049	182867829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
transcript_72764.known	chr2	+	437	2	FSM	ENSMUSG00000026790.20	ENSMUST00000148883.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCACACTTGGCATCCC	6642	False	NA	NA	False	NA	NA	NA	29779245	29782589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29779291_29782197
transcript_7277.known	chr1	-	4901	9	FSM	ENSMUSG00000030768.13	ENSMUST00000195372.2	4901	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	30.8666486681013	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTCTCCGTCGTTCT	NA	False	NA	2	True	AATAAA	-34	NA	183003054	182867829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_183002886
transcript_72771.known	chr2	+	4030	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGGTGCTGCATGCAGGT	NA	False	NA	NA	False	AATAAA	-13	NA	29825437	29850383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
transcript_72792.known	chr2	+	860	3	FSM	ENSMUSG00000019715.15	ENSMUST00000154490.8	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_2	57.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGATAGGAAGACAAAAAA	NA	False	NA	NA	False	AATAAA	-41	NA	29825439	29828967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29825611_29826021_29826250_29828506
transcript_72794.known	chr2	+	7883	56	FSM	ENSMUSG00000057738.15	ENSMUST00000095083.11	7883	56	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_22	102.057131949797	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGCTCCTCTTTATCT	NA	False	NA	21	True	AATAAA	-21	NA	29855691	29921463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137_29889273_29889925_29890075_29891111_29891172_29892242_29892442_29893326_29893432_29893685_29893710_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
transcript_72795.known	chr2	+	7958	56	FSM	ENSMUSG00000057738.15	ENSMUST00000113717.8	7958	56	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_36	107.955276935321	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGCTCCTCTTTATCT	NA	False	NA	21	True	AATAAA	-21	NA	29855571	29921463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137_29889273_29889925_29890075_29892242_29892442_29893326_29893432_29893685_29893710_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29904169_29904185_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
transcript_72796.known	chr2	+	7820	55	FSM	ENSMUSG00000057738.15	ENSMUST00000046257.14	7820	55	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_7	89.7303917849273	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGCTCCTCTTTATCT	NA	False	NA	21	True	AATAAA	-21	NA	29855694	29921463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137_29889273_29889925_29890075_29892242_29892442_29893326_29893432_29893685_29893710_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
transcript_72799.nic	chr2	+	3239	21	ISM	ENSMUSG00000057738.15	ENSMUST00000113719.9	8018	57	-40	32224	-40	5187	5prime_fragment	FALSE	canonical	3	215	junction_7	24.1163844719726	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGATATCCTCACCTTGCT	NA	False	NA	NA	False	AAGAAA	-1	NA	29855531	29889236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137
transcript_728.known	chr1	-	4236	6	FSM	ENSMUSG00000026064.17	ENSMUST00000232841.2	4236	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	963.121093113426	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTTCTGCATTTGA	NA	False	NA	0	True	ATTAAA	-19	NA	30988390	30979382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985721_30988077
transcript_7280.nic	chr1	-	1470	9	ISM	ENSMUSG00000030768.13	ENSMUST00000003035.12	4984	10	-40	9927	-3	0	5prime_fragment	FALSE	canonical	3	56	junction_6	14.115040736746	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCTGCCTCTGCCTTGC	NA	False	NA	-2	True	AATAAA	-13	NA	183003089	182877756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
transcript_72803.known	chr2	+	1471	1	FSM	ENSMUSG00000057738.15	ENSMUST00000202286.2	1471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGTGCTGCAG	NA	False	NA	NA	False	ACTAAA	-40	NA	29855690	29857161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29855700_29857200
transcript_72807.known	chr2	-	1814	9	FSM	ENSMUSG00000039715.9	ENSMUST00000113711.3	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	11.9973955507018	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGAGCCCCAAGGAGCA	NA	False	NA	0	True	NA	NA	NA	29938893	29921557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
transcript_72813.nic	chr2	-	2013	8	NIC	ENSMUSG00000039715.9	novel	1814	9	NA	NA	-28	0	intron_retention	FALSE	canonical	3	156	junction_2	12.6813377263841	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGAGCCCCAAGGAGCA	NA	False	NA	0	True	NA	NA	NA	29938921	29921557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_29921985_29922084_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
transcript_72823.known	chr2	+	2824	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	0	0	0	0	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	2507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29951864	29962589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
transcript_72842.known	chr2	+	2834	8	FSM	ENSMUSG00000054766.14	ENSMUST00000067996.7	2834	8	0	0	0	0	multi-exon	FALSE	canonical	3	3891	junction_1	4471.27957761808	1698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29956467	29962589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29956906_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
transcript_7286.nnic	chr1	-	3382	14	NNC	ENSMUSG00000046836.14	novel	3413	14	NA	NA	428	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_13	34.3655944636527	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCGCTGGATTTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	183078108	183057917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078064
transcript_7287.known	chr1	-	3430	14	FSM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	13.1918030852137	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGCTGGATTTATGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	183078536	183057915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
transcript_7288.known	chr1	-	3413	14	FSM	ENSMUSG00000046836.14	ENSMUST00000163528.8	3413	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_13	29.2690033348083	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCGCTGGATTTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	183078800	183057917	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
transcript_72910.known	chr2	+	844	3	FSM	ENSMUSG00000054766.14	ENSMUST00000147590.2	844	3	0	0	0	0	multi-exon	FALSE	canonical	3	15823	junction_2	947	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGTATAGACGGTGAG	NA	False	NA	NA	False	NA	NA	NA	29960181	29961441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29960368_29960452_29960600_29960930
transcript_72913.nic	chr2	+	3068	22	NIC	ENSMUSG00000026785.15	novel	3460	21	NA	NA	-52	0	combination_of_known_junctions	TRUE	canonical	3	77	junction_7	19.7860437769826	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGCCAGGGGTTGTGT	1266	False	NA	15	True	AATAAA	-17	NA	29967643	29981025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_29967812_29969545_29969775_29969937_29970084_29970586_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
transcript_72916.known	chr2	+	3113	22	FSM	ENSMUSG00000026785.15	ENSMUST00000045246.8	3113	22	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_1	27.5708117374869	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGGGTTGTGTAGTGTC	2218	False	NA	21	True	AATAAA	-23	NA	29968595	29981031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29968803_29969545_29969775_29969937_29970084_29970586_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
transcript_72924.known	chr2	+	3460	21	FSM	ENSMUSG00000026785.15	ENSMUST00000148650.8	3460	21	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	20.1955440629858	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGCCAGGGGTTGTGT	1377	False	NA	15	True	AATAAA	-17	NA	29967754	29981025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_29967812_29969545_29969775_29969937_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
transcript_72942.known	chr2	-	1187	5	FSM	ENSMUSG00000015335.17	ENSMUST00000081838.7	1187	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	253.22754095872	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCATGCTGCCGTGGAC	NA	False	NA	-10	True	ATTAAA	-9	NA	29983647	29980962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983458
transcript_72943.known	chr2	-	1165	5	FSM	ENSMUSG00000015335.17	ENSMUST00000102865.11	1165	5	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_1	34.0917878674616	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	-3	True	ATTAAA	-16	NA	29983660	29980955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983500
transcript_72945.known	chr2	-	846	4	FSM	ENSMUSG00000015335.17	ENSMUST00000137001.2	846	4	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_3	30.9443945740671	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTTTTTCTGTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	29983628	29981342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29981846_29981999_29982078_29982416_29982554_29983500
transcript_72950.known	chr2	-	3934	8	FSM	ENSMUSG00000039686.15	ENSMUST00000154231.8	3934	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	7.43955232359516	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACTTAAAAAAAAGAAAA	NA	False	NA	NA	False	AATAAA	-2	NA	30014597	29995319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_29997681_29997987_29998135_29998232_29998348_30000216_30000394_30000673_30001111_30001193_30001345_30003257_30003494_30014287
transcript_72956.nic	chr2	+	3763	13	NIC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	5.68379763499331	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCGGTGCTGTGCTGGCT	2673	False	NA	20	True	AATAAA	-19	NA	30023733	30042025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_30023925_30024808_30024883_30025420_30025565_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
transcript_72960.known	chr2	+	3595	12	FSM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	5.33195574495097	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCGGTGCTGTGCTGGCT	2697	False	NA	20	True	AATAAA	-19	NA	30023757	30042025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
transcript_72967.nic	chr2	+	2182	8	NIC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	-24	1224	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	5.65324541068839	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACCAAAACCAAAATCTAT	2673	False	NA	NA	False	NA	NA	NA	30023733	30033760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_30023925_30024808_30024883_30025420_30025565_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273
transcript_7297.known	chr1	+	4279	10	FSM	ENSMUSG00000042901.11	ENSMUST00000109166.8	4279	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	45.1526901978029	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTCTCCTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	183078592	183106331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_183079173_183085612_183085683_183087358_183087413_183087819_183087875_183094595_183094660_183094913_183095018_183097514_183097638_183099746_183099870_183103138_183103257_183103343
transcript_72986.known	chr2	-	1805	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCTAGACCCTGAT	NA	False	NA	-28	True	AATAAA	-15	NA	30068462	30063482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
transcript_72989.known	chr2	-	2010	11	FSM	ENSMUSG00000039660.17	ENSMUST00000144093.8	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	40.8044115262063	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTCTAGACCCTG	NA	False	NA	-30	True	AATAAA	-13	NA	30068471	30063484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067978_30068401
transcript_72994.known	chr2	-	2123	10	FSM	ENSMUSG00000039660.17	ENSMUST00000127309.8	2123	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	42.729409885181	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCACCTATGCTCACGT	NA	False	NA	-10	True	AATAAA	-33	NA	30068454	30063464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067978_30068401
transcript_73003.known	chr2	+	1063	3	FSM	ENSMUSG00000015337.6	ENSMUST00000015481.6	1063	3	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	35	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTCCTGTCCTGCTGCTT	NA	False	NA	34	True	NA	NA	NA	30061504	30064081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30062079_30062853_30062964_30063702
transcript_73007.known	chr2	-	2424	10	FSM	ENSMUSG00000039660.17	ENSMUST00000142669.8	2424	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	42.1051007144365	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCACCTATGCTCACGT	NA	False	NA	-10	True	AATAAA	-33	NA	30068441	30063464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604
transcript_73009.nic	chr2	-	1998	14	NIC	ENSMUSG00000039648.15	novel	1876	13	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	49.6595510039827	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	NA	False	NA	-3	True	AATAAA	-25	NA	30095883	30075135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082199_30082298_30084065_30084125_30095644
transcript_73010.known	chr2	-	2026	14	FSM	ENSMUSG00000039648.15	ENSMUST00000113663.9	2026	14	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_13	49.789616559678	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCAAGGCAGCTTCTCTC	NA	False	NA	-10	True	AATAAA	-18	NA	30095813	30075142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30087968_30088172_30095644
transcript_73011.known	chr2	-	1876	13	FSM	ENSMUSG00000039648.15	ENSMUST00000044038.10	1876	13	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_12	20.7811011899434	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	NA	False	NA	-3	True	AATAAA	-25	NA	30095859	30075135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
transcript_73013.known	chr2	-	2038	13	FSM	ENSMUSG00000039648.15	ENSMUST00000148555.8	2038	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_10	50.7807788439681	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCAGCTTCTCTCTTCCT	NA	False	NA	-5	True	AATAAA	-23	NA	30095828	30075137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082199_30082298_30084065_30084125_30095644
transcript_73017.nic	chr2	-	1730	12	ISM	ENSMUSG00000039648.15	ENSMUST00000113661.10	2057	13	4178	-7	-69	0	3prime_fragment	FALSE	canonical	3	127	junction_6	13.3880420309128	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	9467	False	NA	-3	True	AATAAA	-25	NA	30084193	30075135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065
transcript_73018.nic	chr2	-	1995	12	NIC	ENSMUSG00000039648.15	novel	2038	13	NA	NA	-24	0	intron_retention	FALSE	canonical	3	91	junction_11	21.2688419140215	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCAGCTTCTCTCTTCCT	NA	False	NA	-5	True	AATAAA	-23	NA	30095883	30075137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
transcript_7302.nic	chr1	+	669	2	ISM	ENSMUSG00000042901.11	ENSMUST00000193625.2	1810	8	-376	18783	-20	32	5prime_fragment	FALSE	canonical	3	183	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACCATAAAGCAATCTCT	NA	False	NA	NA	False	NA	NA	NA	183078572	183085681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_183079173_183085612
transcript_7303.known	chr1	+	1932	1	FSM	ENSMUSG00000042901.11	ENSMUST00000192252.2	1932	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAATCAAAACTA	NA	False	NA	NA	False	ATTAAA	-24	NA	183078133	183080065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_183078100_183080100
transcript_73035.known	chr2	+	5710	44	FSM	ENSMUSG00000052533.15	ENSMUST00000064447.12	5710	44	0	0	0	0	multi-exon	TRUE	canonical	3	896	junction_14	107.189702087653	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCATGTGGCAACTTTC	4848	False	NA	18	True	ATTAAA	-19	NA	30176408	30234278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
transcript_7304.known	chr1	-	6330	28	FSM	ENSMUSG00000056050.16	ENSMUST00000194543.4	6330	28	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_27	39.9558741524534	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	4043	False	NA	-1	True	CATAAA	-18	NA	183150894	183107681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183132406_183132550_183135177_183135484_183137604_183140360_183143388_183143476_183146987_183147122_183150737
transcript_7305.nnic	chr1	-	3102	24	NNC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	36.7126480319773	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	NA	False	NA	-1	True	CATAAA	-18	NA	183126910	183107681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_183108509_183109058_183109201_183110440_183110513_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
transcript_7307.nnic	chr1	-	2836	24	NNC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	-7	-320	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	36.7126480319773	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTCTTAAGCTAGAATA	NA	False	NA	-71	True	AGTAAA	-14	NA	183126964	183108001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_183108509_183109058_183109201_183110440_183110513_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
transcript_73079.known	chr2	+	1325	12	FSM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	18.5338644710542	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	9917	False	NA	NA	False	AATAAA	-17	NA	30156732	30172160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30156803_30156874_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_7308.nic	chr1	-	3027	23	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	50	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_22	21.1026613025369	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	NA	False	NA	-1	True	CATAAA	-18	NA	183126907	183107681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
transcript_73084.nic	chr2	+	1330	11	ISM	ENSMUSG00000079484.13	ENSMUST00000091132.13	1353	12	259	1	-31	0	3prime_fragment	FALSE	canonical	2	39	junction_2	15.9185426468631	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	9984	False	NA	NA	False	AATAAA	-17	NA	30156799	30172160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_7309.nic	chr1	-	2764	23	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	-7	-320	combination_of_known_junctions	FALSE	canonical	3	85	junction_22	21.1026613025369	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTCTTAAGCTAGAATA	NA	False	NA	-71	True	AGTAAA	-14	NA	183126964	183108001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
transcript_73092.known	chr2	+	534	7	FSM	ENSMUSG00000052533.15	ENSMUST00000113634.3	534	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	456.698539033743	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTTGTTTCTTGTGTAT	4878	False	NA	NA	False	NA	NA	NA	30176438	30193821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30193671
transcript_73094.known	chr2	+	4301	4	FSM	ENSMUSG00000007476.19	ENSMUST00000095078.3	4301	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	22.6028513442196	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGGAGGTCTCCATGC	NA	False	NA	7	True	AATAAA	-15	NA	30127733	30153802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30127818_30130580_30130690_30145179_30147345_30151859
transcript_73099.known	chr2	-	2104	1	FSM	ENSMUSG00000075419.5	ENSMUST00000100219.5	2104	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	2248	False	NA	24	True	AATAAA	-44	NA	30176346	30174242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30174200_30176300
transcript_73100.known	chr2	+	4238	13	FSM	ENSMUSG00000099041.2	ENSMUST00000139454.3	4238	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	29.1331950797635	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	30130578	30172160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30130690_30145179_30147345_30151859_30152439_30156874_30156954_30159700_30159864_30164487_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_73101.known	chr2	-	1851	13	FSM	ENSMUSG00000026860.17	ENSMUST00000113621.10	1851	13	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_7	147.537824716993	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249344	30234822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30239237_30239250_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_73105.known	chr2	-	1749	12	FSM	ENSMUSG00000026860.17	ENSMUST00000100215.11	1749	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	118.792269553979	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249252	30234820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_73112.known	chr2	-	1733	11	FSM	ENSMUSG00000026860.17	ENSMUST00000163668.3	1733	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	145.180714972754	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249301	30234822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_73117.known	chr2	-	1810	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	55.8	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249328	30234820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_73129.known	chr2	-	1694	10	FSM	ENSMUSG00000026860.17	ENSMUST00000113620.10	1694	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	106.475639131188	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249277	30234822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_73136.nic	chr2	-	2263	10	NIC	ENSMUSG00000026860.17	novel	1851	13	NA	NA	-21	0	intron_retention	FALSE	canonical	3	213	junction_4	53.8401841759365	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249370	30234822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_73147.known	chr2	-	1823	9	FSM	ENSMUSG00000026860.17	ENSMUST00000151354.8	1823	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	111.252808953302	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCTCCCTTAAGGCAGA	NA	False	NA	50	True	NA	NA	NA	30249317	30235146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_73159.nic	chr2	-	5295	8	NIC	ENSMUSG00000026860.17	novel	1851	13	NA	NA	-5	0	intron_retention	FALSE	canonical	3	286	junction_4	33.7463527885698	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249282	30234822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_73167.known	chr2	+	3381	16	FSM	ENSMUSG00000026858.19	ENSMUST00000077977.14	3381	16	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_1	8.28385310240484	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTGTGTCTTGCTGGGT	NA	False	NA	6	True	GATAAA	-16	NA	30254244	30275533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30254318_30257563_30257800_30258888_30259100_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185_30268273_30271649_30271749_30271950_30272086_30272977_30273032_30273601_30273719_30273940
transcript_73172.known	chr2	+	2196	11	FSM	ENSMUSG00000026858.19	ENSMUST00000140075.9	2196	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	9.21737489744233	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGTCCCCTGCATCTGT	NA	False	NA	NA	False	NA	NA	NA	30254265	30269106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30254318_30257563_30257800_30258888_30259100_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185
transcript_73173.known	chr2	+	3586	16	FSM	ENSMUSG00000026858.19	ENSMUST00000100214.10	3586	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.8497661784809	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCTCTGTGTCTTGCTGG	NA	False	NA	4	True	GATAAA	-14	NA	30254307	30275531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30254588_30257563_30257800_30258888_30259100_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185_30268273_30271649_30271749_30271950_30272086_30272977_30273032_30273601_30273719_30273940
transcript_73175.known	chr2	-	3833	14	FSM	ENSMUSG00000026853.16	ENSMUST00000028207.13	3833	14	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_2	7.8897731722819	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTCTAGAATACATTCT	NA	False	NA	NA	False	ACTAAA	-16	NA	30305825	30291112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30292806_30293500_30293639_30294539_30294603_30294949_30295086_30295177_30295301_30295396_30295517_30296379_30296481_30296967_30297147_30297717_30297893_30298067_30298234_30298752_30298807_30299968_30300088_30302994_30303259_30305323
transcript_73177.known	chr2	+	2294	9	FSM	ENSMUSG00000026856.15	ENSMUST00000123202.8	2294	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	142.89506639489	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282427	30290539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30282525_30283658_30283866_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
transcript_73182.known	chr2	+	2251	8	FSM	ENSMUSG00000026856.15	ENSMUST00000028209.15	2251	8	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_6	27.7995742149158	1281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGAGCATACATTACTTG	NA	False	NA	9	True	AATAAA	-16	NA	30282265	30290541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
transcript_73192.known	chr2	+	1958	7	FSM	ENSMUSG00000026856.15	ENSMUST00000113612.10	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	126.441027096957	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282427	30290539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287479_30287570_30289153
transcript_73194.nic	chr2	+	2388	7	NIC	ENSMUSG00000026856.15	novel	2294	9	NA	NA	40	0	intron_retention	FALSE	canonical	3	287	junction_5	28.1706111636459	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282305	30290539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286543_30287030_30287160_30287479_30287570_30289153
transcript_73203.known	chr2	+	767	6	FSM	ENSMUSG00000026856.15	ENSMUST00000156059.8	767	6	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_4	25.419677417308	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTCGGCACTTAAGAG	NA	False	NA	NA	False	GGGGCT	-44	NA	30282439	30287327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030
transcript_73219.known	chr2	+	336	2	FSM	ENSMUSG00000026856.15	ENSMUST00000156704.2	336	2	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGACTGGGTGGAAGCC	NA	False	NA	NA	False	NA	NA	NA	30282441	30285923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30282525_30285670
transcript_73230.known	chr2	+	2586	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	0	0	0	0	multi-exon	TRUE	canonical	3	440	junction_4	51.3501655905104	2827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	NA	False	NA	17	True	ATTAAA	-20	NA	30306050	30337817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
transcript_73238.known	chr2	+	3738	9	FSM	ENSMUSG00000039515.12	ENSMUST00000125743.8	3738	9	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_4	54.3022501835789	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGTGTGAGACATCTT	NA	False	NA	16	True	ATTAAA	-19	NA	30306207	30337816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30329777_30333301_30333410_30336388
transcript_7325.known	chr1	-	918	8	FSM	ENSMUSG00000056050.16	ENSMUST00000195233.3	918	8	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	18.4766813876854	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAGAAGAAGAAAGAGCAG	NA	False	NA	NA	False	AAGAAA	-10	NA	183126957	183117393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
transcript_73250.known	chr2	-	1672	7	FSM	ENSMUSG00000044320.15	ENSMUST00000050003.9	1672	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	6.6248689714506	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCAGAGTTTTTCTCTG	NA	False	NA	NA	False	GATAAA	-16	NA	30691719	30685312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30685818_30686156_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30691151
transcript_73252.nic	chr2	-	1456	7	NIC	ENSMUSG00000044320.15	novel	969	7	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	8.78287475083693	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCCAGTAAAAGCCACTC	NA	False	NA	NA	False	AATAAA	-35	NA	30691746	30685591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_30685818_30686120_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30691151
transcript_73253.nic	chr2	-	1572	6	ISM	ENSMUSG00000044320.15	ENSMUST00000050003.9	1672	7	-27	265	-27	0	intron_retention	FALSE	canonical	3	17	junction_1	5.63560112144215	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCTAGGTGCCTGATTG	NA	False	NA	NA	False	AGTAAA	-3	NA	30691746	30685577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_30685818_30686156_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925
transcript_73254.known	chr2	-	796	6	FSM	ENSMUSG00000044320.15	ENSMUST00000138959.8	796	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	12.3190908755476	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAAGCCACTCTAGGTGC	NA	False	NA	NA	False	AATAAA	-42	NA	30691013	30685584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30685818_30686120_30686224_30686412_30686579_30687879_30687993_30690735_30690829_30690925
transcript_7326.nic	chr1	-	1595	4	ISM	ENSMUSG00000056050.16	ENSMUST00000194543.4	6330	28	-39	31500	-39	-14007	5prime_fragment	FALSE	canonical	3	46	junction_3	2.44948974278318	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCCTAAAAGAATCAGTTA	4004	False	NA	NA	False	AAAAAG	-5	NA	183150933	183139181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_183140360_183143388_183143476_183146987_183147122_183150737
transcript_73264.known	chr2	+	1192	4	FSM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	216.499422632025	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCCCCAGGCAGTCT	NA	False	NA	11	True	AATAAA	-17	NA	30697952	30713029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30698096_30709640_30709781_30710460_30710714_30712373
transcript_73267.known	chr2	+	1387	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	0	0	0	0	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGTGTGGATGTATGT	NA	False	NA	27	True	AATAAA	-33	NA	30697837	30713045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
transcript_73269.known	chr2	+	837	4	FSM	ENSMUSG00000026857.10	ENSMUST00000129712.3	837	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	226.212780855155	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGAGGAGCGCCAGGAGAA	NA	False	NA	NA	False	NA	NA	NA	30698124	30712564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30698378_30709640_30709781_30710460_30710714_30712373
transcript_7327.nic	chr1	-	1119	4	ISM	ENSMUSG00000056050.16	ENSMUST00000194543.4	6330	28	-39	31976	-39	-14483	5prime_fragment	FALSE	canonical	3	46	junction_3	2.44948974278318	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTAACAGATAAGGATCC	4004	False	NA	NA	False	NA	NA	NA	183150933	183139657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_183140360_183143388_183143476_183146987_183147122_183150737
transcript_73274.known	chr2	-	4147	6	FSM	ENSMUSG00000039483.11	ENSMUST00000041726.4	4147	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	13.3356664625357	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGTCTTTGTATGACA	NA	False	NA	-19	True	ATTAAA	-19	NA	30720345	30713108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30714517_30714652_30714740_30715463_30715573_30715666_30715774_30716934_30717111_30718085
transcript_73278.known	chr2	-	2792	5	FSM	ENSMUSG00000039483.11	ENSMUST00000148036.7	2792	5	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	10.6858551365813	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGTCTTTGTATGACA	1761	False	NA	-19	True	ATTAAA	-19	NA	30718266	30713108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30714517_30714652_30715573_30715666_30715774_30716934_30717111_30718085
transcript_73279.nic	chr2	-	2943	4	NIC	ENSMUSG00000039483.11	novel	2792	5	NA	NA	-20	0	intron_retention	FALSE	canonical	3	92	junction_3	6.48074069840786	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGTCTTTGTATGACA	1704	False	NA	-19	True	ATTAAA	-19	NA	30718323	30713108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_30714517_30714652_30715774_30716934_30717111_30718085
transcript_73281.known	chr2	-	1000	3	FSM	ENSMUSG00000039483.11	ENSMUST00000144330.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATACATCATGCAGGCA	1724	False	NA	NA	False	NA	NA	NA	30718303	30715167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30715774_30716934_30717111_30718085
transcript_73282.known	chr2	+	1441	4	FSM	ENSMUSG00000039476.14	ENSMUST00000041659.7	1441	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	3.55902608401044	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGAGGCTTCAGAAGGGCA	NA	False	NA	NA	False	AATAAA	-19	NA	30735070	30771263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30735694_30768421_30768604_30769503_30769683_30770806
transcript_73284.known	chr2	-	3647	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	10.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGTGGTCATGATGTC	8411	False	NA	NA	False	NA	NA	NA	30793309	30779482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30782839_30790878_30790962_30793101
transcript_73288.known	chr2	+	2809	5	FSM	ENSMUSG00000026848.15	ENSMUST00000156711.8	2809	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	43.5918570377542	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTCCTGAGCTTTTCC	NA	False	NA	10	True	AATAAA	-15	NA	30843198	30849024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30843236_30843763_30844021_30845779_30845966_30846459_30846588_30846823
transcript_7329.known	chr1	+	2384	11	FSM	ENSMUSG00000072258.12	ENSMUST00000192076.3	2384	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	9.96042167782067	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	False	NA	16	True	AATAAA	-27	NA	183170324	183191020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
transcript_73296.known	chr2	+	4775	4	FSM	ENSMUSG00000026848.15	ENSMUST00000133544.8	4775	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTTTCCTGAGCTTTTC	NA	False	NA	9	True	AATAAA	-14	NA	30842990	30849023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30843236_30843763_30845966_30846459_30846588_30846823
transcript_73302.known	chr2	-	1401	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	220.841996685413	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGCTTTGTGTGTCTT	NA	False	NA	-8	True	TTTAAA	-30	NA	30857945	30850638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
transcript_73308.known	chr2	-	660	2	FSM	ENSMUSG00000026849.19	ENSMUST00000143199.2	660	2	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAGGCTACCGTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	30857900	30856922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30857368_30857685
transcript_73309.known	chr2	-	1605	4	FSM	ENSMUSG00000026849.19	ENSMUST00000137694.8	1605	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	239.033238042095	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATAACGTTTTATT	NA	False	NA	-61	True	NA	NA	NA	30857884	30850691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101
transcript_73312.known	chr2	-	1984	9	FSM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_7	16.1240309786356	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30871953	30862188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30871789
transcript_73316.nic	chr2	-	795	8	ISM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	6	1573	6	-1573	5prime_fragment	FALSE	canonical	3	349	junction_6	17.1832856614342	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGCCCAAAGCCCGGCC	NA	False	NA	NA	False	AAGAAA	-5	NA	30871947	30863761	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30871789
transcript_73320.known	chr2	-	1064	2	FSM	ENSMUSG00000026851.10	ENSMUST00000156325.2	1064	2	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGCTGCCTCACACCT	NA	False	NA	NA	False	NA	NA	NA	30872213	30870914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30871555_30871789
transcript_73328.known	chr2	+	5088	25	FSM	ENSMUSG00000026854.17	ENSMUST00000102849.11	5088	25	0	0	0	0	multi-exon	TRUE	canonical	1	7	junction_21	9.09889721645187	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTGGTGAACCTATCTA	NA	False	NA	NA	False	AATAAA	-17	NA	30872290	30913598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30872411_30886059_30886160_30888784_30888881_30890068_30890123_30892567_30892631_30892927_30893060_30894415_30894513_30894943_30895014_30896395_30896510_30897790_30897870_30900177_30900626_30900990_30901135_30901392_30901509_30901634_30901808_30902318_30902414_30906299_30906334_30906504_30906551_30907140_30907322_30907396_30907524_30907693_30907864_30907944_30908027_30908726_30908836_30909796_30909900_30910840_30910913_30911335
transcript_73339.nnic	chr2	+	1685	4	NNC	ENSMUSG00000026854.17	novel	622	2	NA	NA	-621	-943	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	12.5521135891752	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTAGCTTGTACTGTGAC	7579	False	NA	18	True	AATAAA	-18	NA	30909209	30912651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_30909404_30909796_30909900_30910840_30910913_30911335
transcript_73341.known	chr2	+	1901	1	FSM	ENSMUSG00000026854.17	ENSMUST00000192882.2	1901	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAAAGGAGAAGCCTG	NA	False	NA	NA	False	AATAAA	-6	NA	30872345	30874246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_30872300_30874200
transcript_73343.known	chr2	-	4726	17	FSM	ENSMUSG00000075415.14	ENSMUST00000113560.8	4726	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	52.6539409731124	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGGTTCTCTGTTGTATG	4768	False	NA	-6	True	AATAAA	-17	NA	31032020	30916218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30918896_30923041_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30934893_30934909_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_73345.nnic	chr2	-	4020	17	NNC	ENSMUSG00000075415.14	novel	1776	16	NA	NA	2	-1421	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	60.0619146693643	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGTGTATTTTAAGTG	4770	False	NA	-15	True	AATAAA	-17	NA	31032018	30919627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_30920375_30921815_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30934893_30934909_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_73354.known	chr2	-	3892	15	FSM	ENSMUSG00000075415.14	ENSMUST00000113564.9	3892	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	51.7322877112228	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCTTTTTTTTTTTCTAT	4819	False	NA	-1	True	AATAAA	-16	NA	31031969	30916806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30918896_30923041_30923201_30926129_30926270_30926553_30926676_30927167_30927301_30930416_30930527_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_73355.known	chr2	-	1859	15	FSM	ENSMUSG00000075415.14	ENSMUST00000100208.9	1859	15	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	25.508001945768	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACAAAAAGCATTGGAG	4974	False	NA	10	True	NA	NA	NA	31031814	30923010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_73357.known	chr2	-	1761	15	FSM	ENSMUSG00000075415.14	ENSMUST00000075326.11	1761	15	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_6	41.01424590733	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCCACTTAAAACAAAACAAA	4974	False	NA	-1	True	NA	NA	NA	31031814	30923021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943093_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_73363.known	chr2	-	8469	14	FSM	ENSMUSG00000075415.14	ENSMUST00000073879.12	8469	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	43.3066675654142	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTCTCTGTTGTATGA	4974	False	NA	-5	True	AATAAA	-18	NA	31031814	30916217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_73366.known	chr2	-	1910	9	FSM	ENSMUSG00000075415.14	ENSMUST00000113552.9	1910	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	13.559475469206	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTTTTGTGTCTTCTT	4837	False	NA	-13	True	NA	NA	NA	31031951	30943246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_73372.known	chr2	+	6134	18	FSM	ENSMUSG00000000194.14	ENSMUST00000056433.7	6134	18	0	0	0	0	multi-exon	FALSE	canonical	1	139	junction_14	88.5769073297929	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGTAGCCCCACCTGGC	NA	False	NA	15	True	ATTAAA	-30	NA	31042327	31108787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858_31081903_31097690_31097741_31099078_31099163_31100460_31100583_31104255
transcript_73380.known	chr2	+	1534	14	FSM	ENSMUSG00000000194.14	ENSMUST00000172422.8	1534	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	124.164616823819	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTCTTTTTTTTTTT	NA	False	NA	NA	False	ACTAAA	-16	NA	31042362	31082125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31042494_31057032_31057154_31058173_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858
transcript_73386.known	chr2	+	4653	8	FSM	ENSMUSG00000062661.7	ENSMUST00000000199.8	4653	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_6	7.16852530873965	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTGTGAGCCTGGT	NA	False	NA	NA	False	ATTAAA	-22	NA	31135834	31186001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31136255_31160623_31160649_31170677_31170817_31172320_31172400_31174158_31174248_31174673_31174752_31177298_31177416_31182295
transcript_73389.known	chr2	+	2495	13	FSM	ENSMUSG00000055632.19	ENSMUST00000142448.8	2495	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	9.34931667140557	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATGTCTTTGCTGAGT	NA	False	NA	NA	False	TATAAA	-19	NA	31336746	31350749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31336888_31340819_31340970_31342821_31342960_31343054_31343177_31343394_31343633_31344639_31344703_31344816_31344940_31345503_31345639_31347071_31347201_31347744_31348066_31348695_31348816_31349092_31349220_31350061
transcript_73396.nic	chr2	+	1905	8	ISM	ENSMUSG00000055632.19	ENSMUST00000142448.8	2495	13	7695	-1	-278	0	3prime_fragment	FALSE	canonical	2	7	junction_6	7.07106781186548	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATGTCTTTGCTGAGTT	NA	False	NA	NA	False	TATAAA	-20	NA	31344441	31350750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_31344703_31344816_31344940_31345503_31345639_31347071_31347201_31347744_31348066_31348695_31348816_31349092_31349220_31350061
transcript_73402.nic	chr2	+	2824	6	NIC	ENSMUSG00000055632.19	novel	15646	98	NA	NA	-290	0	intron_retention	FALSE	canonical	2	13	junction_2	4.8	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATGTCTTTGCTGAGTT	NA	False	NA	NA	False	TATAAA	-20	NA	31344429	31350750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_31344703_31344816_31344940_31345503_31345639_31347071_31347201_31347744_31349220_31350061
transcript_73407.nnic	chr2	+	1248	5	NIC	ENSMUSG00000055632.19	novel	15646	98	NA	NA	-191	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	9.54921462739214	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATGTCTTTGCTGAGTT	NA	False	NA	NA	False	TATAAA	-20	NA	31344528	31350750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_31344703_31344816_31344940_31345503_31345639_31349092_31349220_31350061
transcript_73419.known	chr2	+	1696	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	0	0	0	0	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	4841	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTGCGTGTGTGCC	NA	False	NA	27	True	ATTAAA	-22	NA	31360218	31410684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
transcript_73445.known	chr2	+	3268	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_18	67.3624112131124	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTTTGTTTGCTGGCC	493	False	NA	36	True	AATAAA	-37	NA	31462662	31507538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
transcript_73446.nnic	chr2	+	3255	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-30	-96	intron_retention	FALSE	canonical	3	154	junction_18	127.170586318894	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATGTTGTTTTTTAAAGA	463	False	NA	10	True	ATTAAA	-19	NA	31462632	31507434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
transcript_73447.nnic	chr2	+	3352	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-30	0	intron_retention	FALSE	canonical	3	154	junction_18	127.170586318894	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	463	False	NA	29	True	AATAAA	-30	NA	31462632	31507531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
transcript_7345.known	chr1	+	2792	4	FSM	ENSMUSG00000039384.9	ENSMUST00000048655.8	2792	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	4.08248290463863	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGTACGTGCCTGTC	NA	False	NA	NA	False	TATAAA	-24	NA	183766577	183807833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_183766767_183768997_183769850_183801048_183801421_183806454
transcript_73451.known	chr2	+	3648	18	FSM	ENSMUSG00000026843.16	ENSMUST00000055244.13	3648	18	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_10	50.5976051514182	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	659	False	NA	29	True	AATAAA	-30	NA	31462828	31507531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509
transcript_73452.nic	chr2	+	3226	18	NIC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-30	0	intron_retention	TRUE	canonical	3	48	junction_16	158.982817726256	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTTTGTTTGCTGGCC	463	False	NA	36	True	AATAAA	-37	NA	31462632	31507538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31505509_31505638_31506190
transcript_73462.known	chr2	+	1909	2	FSM	ENSMUSG00000026843.16	ENSMUST00000137504.3	1909	2	0	0	0	0	multi-exon	FALSE	canonical	3	702	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATTAAAAAAAAAACAA	634	False	NA	NA	False	AATACA	-3	NA	31462803	31474913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31462966_31473166
transcript_73465.known	chr2	+	6327	11	FSM	ENSMUSG00000026842.17	ENSMUST00000075759.13	6327	11	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	36.9031163995671	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCTTGGTCTGTGATTC	5754	False	NA	20	True	AATAAA	-21	NA	31578562	31693553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31579955_31668345_31668520_31668932_31669229_31674518_31674792_31680282_31680368_31680673_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
transcript_73468.known	chr2	+	5794	11	FSM	ENSMUSG00000026842.17	ENSMUST00000028190.13	5794	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	30.1131200641846	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAGGTCCTGATGTGTC	NA	False	NA	NA	False	CATAAA	-17	NA	31649954	31694239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31650128_31668345_31668520_31668932_31669229_31674518_31674792_31680282_31680368_31680673_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
transcript_73472.known	chr2	+	1686	9	FSM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_6	46.6797600679352	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGGAGTCTCACCGCGT	NA	False	NA	NA	False	AATAAA	-16	NA	31560726	31571361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
transcript_73476.known	chr2	+	2076	8	FSM	ENSMUSG00000039356.16	ENSMUST00000149094.8	2076	8	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_5	49.3699073839727	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAGAAAACCAAAGA	NA	False	NA	-20	True	NA	NA	NA	31560730	31570992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31566749_31568462_31568640_31569862_31569992_31570501
transcript_73482.known	chr2	+	3117	6	FSM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	6.46838465151849	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGTCTTTGTGTTTCTT	NA	False	NA	4	True	AATAAA	-14	NA	31840150	31863454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31840394_31840540_31840603_31852226_31852294_31855082_31855125_31859641_31859805_31860914
transcript_73484.known	chr2	+	519	5	FSM	ENSMUSG00000001864.14	ENSMUST00000128271.8	519	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13.8270568090248	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGCCTCTCCCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31850359	31861036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31850485_31852226_31852294_31855082_31855125_31859641_31859805_31860914
transcript_7349.known	chr1	-	1272	1	FSM	ENSMUSG00000044854.8	ENSMUST00000193919.2	1272	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTCAGATGTCCTTAATG	NA	False	NA	NA	False	AATAAA	-20	NA	183766498	183765226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_183765200_183766500
transcript_73491.known	chr2	+	6605	36	FSM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_30	27.3468425219141	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGGTATTTATTTGGG	NA	False	NA	32	True	ATTAAA	-26	NA	31864447	31942383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881438_31884534_31884989_31886387_31886564_31887964_31888063_31892603_31892691_31892892_31893043_31894324_31894484_31896700_31896805_31900194_31900378_31901023_31901098_31901196_31901281_31907037_31907350_31908206_31908369_31910269_31910370_31915254_31915331_31916859_31916939_31920718_31920810_31921261_31921321_31923214_31924982_31928113_31928185_31929334_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
transcript_73499.nic	chr2	+	2638	15	NIC	ENSMUSG00000001855.16	novel	6605	36	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_14	34.0507574311153	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTCC	NA	False	NA	NA	False	NA	NA	NA	31864454	31888709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881438_31884534_31884989_31886387_31886564_31887964_31888063_31888214
transcript_7350.known	chr1	-	2278	4	FSM	ENSMUSG00000039377.8	ENSMUST00000048572.7	2278	4	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_3	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGGCGCTCTGGCTTGC	NA	False	NA	NA	False	AATAAA	-26	NA	184464816	184459336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_184460189_184462056_184462242_184462887_184463068_184463755
transcript_73500.nic	chr2	+	1032	7	ISM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	-73	69145	-73	3270	5prime_fragment	FALSE	canonical	3	103	junction_4	13.4039795085887	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGCATGTGAAAGATTAT	NA	False	NA	9	True	NA	NA	NA	31864374	31873238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134
transcript_73503.nic	chr2	-	4582	3	ISM	ENSMUSG00000050592.9	ENSMUST00000139629.2	3236	6	-186	16812	2	0	5prime_fragment	FALSE	canonical	2	4	junction_2	3.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGGCTCTGGTGGCAAT	NA	False	NA	NA	False	AATAAA	-35	NA	31974867	31956878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_31959786_31972595_31973621_31974217
transcript_73504.nic	chr2	-	3994	3	NIC	ENSMUSG00000050592.9	novel	4107	2	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	4	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGGCTCTGGTGGCAAT	NA	False	NA	NA	False	AATAAA	-35	NA	31974900	31956878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_31959786_31972595_31973621_31974838
transcript_73506.known	chr2	-	4107	2	FSM	ENSMUSG00000050592.9	ENSMUST00000056406.7	4107	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGGCTCTGGTGGCAAT	NA	False	NA	NA	False	AATAAA	-35	NA	31973795	31956878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_31959786_31972595
transcript_73507.known	chr2	-	525	2	FSM	ENSMUSG00000050592.9	ENSMUST00000130178.2	525	2	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGCGCCAGGCTGCGGG	NA	False	NA	NA	False	NA	NA	NA	31969364	31959431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_31959786_31969193
transcript_73508.known	chr2	+	1947	2	FSM	ENSMUSG00000051373.6	ENSMUST00000057423.6	1947	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCCTGTGTGGTTCTTA	NA	False	NA	NA	False	AATACA	-22	NA	31985539	32000832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_31986275_31999620
transcript_73511.known	chr2	+	8612	30	FSM	ENSMUSG00000039262.17	ENSMUST00000036691.14	8612	30	0	0	0	0	multi-exon	TRUE	canonical	3	120	junction_19	84.1956133534682	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGTCGGTTTTCTATC	6650	False	NA	24	True	AATAAA	-40	NA	32041093	32124549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32041304_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109225_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32120622
transcript_73526.known	chr2	+	2918	20	FSM	ENSMUSG00000039254.17	ENSMUST00000036473.16	2918	20	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_15	17.3977423950124	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	17	True	AATAAA	-18	NA	32126601	32145017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
transcript_73529.nnic	chr2	+	2976	20	NNC	ENSMUSG00000039254.17	novel	2918	20	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	34.216031945643	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	17	True	AATAAA	-18	NA	32126618	32145017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_32126829_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
transcript_7353.known	chr1	-	1917	8	FSM	ENSMUSG00000073481.10	ENSMUST00000068725.10	1917	8	0	0	0	0	multi-exon	FALSE	canonical	3	760	junction_6	70.0437181264644	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCCTCTGTGACTTTT	NA	False	NA	NA	False	NA	NA	NA	184578078	184545264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184573450_184573625_184577742
transcript_73535.nnic	chr2	+	2830	19	NIC	ENSMUSG00000039254.17	novel	2918	20	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_11	38.3467367871403	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	17	True	AATAAA	-18	NA	32126596	32145017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
transcript_73537.known	chr2	+	3340	19	FSM	ENSMUSG00000039254.17	ENSMUST00000129163.8	3340	19	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_14	17.7705714561053	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATGTTTTATGTTATTTA	NA	False	NA	13	True	AATAAA	-14	NA	32126696	32145013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
transcript_73562.known	chr2	-	2005	7	FSM	ENSMUSG00000002550.17	ENSMUST00000002625.15	2005	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	20.9741904889478	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTCCTGTTTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	32150171	32145013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32146224_32146629_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
transcript_73573.known	chr2	-	793	4	FSM	ENSMUSG00000002550.17	ENSMUST00000134351.2	793	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	14.0791413879619	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCGGTATTGCCTTTATG	NA	False	NA	NA	False	NA	NA	NA	32150073	32148107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32148197_32148288_32148680_32149591_32149752_32149920
transcript_73576.known	chr2	+	318	1	FSM	ENSMUSG00000066068.6	ENSMUST00000118269.2	318	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3527	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCCTCCCCCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	32161856	32162174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32161900_32162200
transcript_73578.known	chr2	+	4361	26	FSM	ENSMUSG00000002546.18	ENSMUST00000239447.2	4361	26	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	19.1852443299532	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGGTGTTCGTCATTGG	NA	False	NA	30	True	AATAAA	-23	NA	32178264	32197933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32178409_32182104_32182228_32186637_32186734_32186976_32187021_32187119_32187184_32187532_32187590_32187765_32187847_32188611_32188651_32188897_32188961_32189043_32189138_32189215_32189323_32191696_32191756_32192153_32192296_32192714_32192805_32192907_32193016_32193156_32193245_32193595_32193934_32194153_32194268_32194645_32194892_32194970_32195047_32195221_32195308_32195486_32195706_32195784_32195888_32195988_32196096_32196171_32196329_32196417
transcript_73583.nic	chr2	+	4327	25	NIC	ENSMUSG00000002546.18	novel	4373	27	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_6	28.9025842270203	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTGGGCCTAGGGTGTT	NA	False	NA	21	True	AATAAA	-14	NA	32178208	32197924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_32178409_32182104_32182228_32186637_32186734_32186976_32187021_32187119_32187184_32187532_32187590_32188611_32188651_32188897_32188961_32189043_32189138_32189215_32189323_32191696_32191756_32192153_32192296_32192714_32192805_32192907_32193016_32193156_32193245_32193595_32193934_32194153_32194268_32194645_32194892_32194970_32195047_32195221_32195308_32195486_32195706_32195784_32195888_32195988_32196096_32196171_32196329_32196417
transcript_7359.known	chr1	-	633	5	FSM	ENSMUSG00000073481.10	ENSMUST00000162261.8	633	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	388.369910652203	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184559464	184545888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559304
transcript_73590.known	chr2	-	919	6	FSM	ENSMUSG00000044627.12	ENSMUST00000140406.8	919	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	1714.39027062102	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32177947	32168827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32169144_32170238_32170523_32170720_32170816_32171697_32171823_32177608_32177658_32177897
transcript_73591.known	chr2	-	768	5	FSM	ENSMUSG00000044627.12	ENSMUST00000183946.8	768	5	0	0	0	0	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178080	32168827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
transcript_73592.known	chr2	-	522	5	FSM	ENSMUSG00000044627.12	ENSMUST00000113400.3	522	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	1473.86522026269	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATTGGGAGGGGTGGGT	NA	False	NA	-114	True	NA	NA	NA	32178081	32168929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32178042
transcript_73594.known	chr2	-	580	4	FSM	ENSMUSG00000044627.12	ENSMUST00000113397.9	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	1606.82426612938	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178017	32168827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32169144_32170720_32170816_32177608_32177658_32177897
transcript_73598.known	chr2	-	4511	2	FSM	ENSMUSG00000044627.12	ENSMUST00000127131.3	4511	2	0	0	0	0	multi-exon	FALSE	canonical	3	3619	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGATAAAAGAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	32178043	32173292	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32177658_32177897
transcript_73607.nic	chr2	+	2747	16	NIC	ENSMUSG00000039205.17	novel	2604	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	47	junction_3	15.4050496771531	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	6	True	AATAAA	-17	NA	32253021	32268309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
transcript_73608.known	chr2	-	680	2	FSM	ENSMUSG00000039195.5	ENSMUST00000048792.5	680	2	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTCTTCTTTGTGCCCA	NA	False	NA	3	True	ATTAAA	-21	NA	32271950	32269112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32269546_32271703
transcript_73612.known	chr2	+	4978	7	FSM	ENSMUSG00000026820.6	ENSMUST00000028162.5	4978	7	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_6	7.22649446289293	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTTTTGGTCATG	7092	False	NA	NA	False	NA	NA	NA	32285907	32295784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32286563_32287549_32287748_32290061_32290121_32290414_32290565_32290889_32291091_32291498_32291617_32292187
transcript_7362.known	chr1	-	3035	2	FSM	ENSMUSG00000039349.6	ENSMUST00000048308.6	3035	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGGCTGTGCCTTCCCT	NA	False	NA	-3	True	AATAAA	-28	NA	184615415	184604122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_184606625_184614882
transcript_73621.known	chr2	-	3294	11	FSM	ENSMUSG00000026819.16	ENSMUST00000028160.15	3294	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	31.7200252206709	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGGAGCCAGGGTTTTTC	8176	False	NA	-6	True	AATAAA	-17	NA	32341434	32304498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32310667_32310704_32311314_32311403_32311484_32311612_32341078
transcript_73623.known	chr2	-	2541	10	FSM	ENSMUSG00000026819.16	ENSMUST00000113307.9	2541	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	28.5933601892744	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTCATTTTCAAGTTCA	9460	False	NA	NA	False	NA	NA	NA	32314017	32305071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32311314_32311403_32311484_32311612_32313805
transcript_73624.known	chr2	-	2643	10	FSM	ENSMUSG00000026819.16	ENSMUST00000113308.8	2643	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	28.5933601892744	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATGGGAAAGTGGCTAC	2713	False	NA	NA	False	NA	NA	NA	32320764	32304981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32311314_32311403_32311484_32311612_32320540
transcript_73626.known	chr2	-	3278	10	FSM	ENSMUSG00000026819.16	ENSMUST00000113310.9	3278	10	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	7.53919797941661	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAATGGAGCCAGGGTTT	8153	False	NA	-9	True	AATAAA	-14	NA	32341457	32304501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32311314_32311403_32311484_32311612_32341078
transcript_73629.known	chr2	+	4650	2	FSM	ENSMUSG00000039164.3	ENSMUST00000048431.3	4650	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATACACACTCCTCTTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	32340468	32346965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32342962_32344808
transcript_73630.nic	chr2	+	3873	12	NIC	ENSMUSG00000039157.13	novel	4223	11	NA	NA	-69	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	35.533013400531	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTTTTTGTTGGTGTTT	1513	False	NA	17	True	ATTAAA	-17	NA	32425274	32459762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_32425642_32426081_32426245_32448038_32448160_32448329_32448360_32450050_32450168_32453430_32453478_32453613_32453772_32455412_32455518_32455599_32455817_32456280_32456403_32456499_32456570_32457406
transcript_73635.known	chr2	+	4223	11	FSM	ENSMUSG00000039157.13	ENSMUST00000048375.6	4223	11	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_7	13.8115893364956	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGGTGTTTCTTTTC	1609	False	NA	23	True	ATTAAA	-23	NA	32425370	32459768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32426245_32448038_32448160_32448329_32448360_32450050_32450168_32453430_32453478_32453613_32453772_32455412_32455518_32455599_32455817_32456280_32456403_32456499_32456570_32457406
transcript_73638.known	chr2	+	5935	10	FSM	ENSMUSG00000039157.13	ENSMUST00000136816.8	5935	10	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_6	14.2265618379282	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTTTTTGTTGGTGTTT	1582	False	NA	17	True	ATTAAA	-17	NA	32425343	32459762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32426245_32448038_32448160_32448329_32450168_32453430_32453478_32453613_32453772_32455412_32455518_32455599_32455817_32456280_32456403_32456499_32456570_32457406
transcript_73639.known	chr2	+	869	4	FSM	ENSMUSG00000026810.13	ENSMUST00000028151.7	869	4	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	58.5965490072202	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCATCCTTGCTCTG	4773	False	NA	23	True	AATAAA	-24	NA	32460869	32463591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32460925_32461217_32461308_32462308_32462412_32462970
transcript_7364.known	chr1	-	4221	18	FSM	ENSMUSG00000026620.12	ENSMUST00000027929.10	4221	18	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_17	8.12446431558567	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGAATCACCTGTTTGC	3256	False	NA	-6	True	AATAAA	-26	NA	184731767	184628985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_184631076_184633005_184633051_184637599_184637852_184639279_184639445_184640525_184640627_184644192_184644387_184644678_184644833_184646713_184646827_184648275_184648376_184651506_184651627_184651714_184651952_184653748_184653806_184658012_184658084_184660230_184660297_184661518_184661568_184675402_184675457_184676993_184677198_184731618
transcript_73647.known	chr2	+	3626	6	FSM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	7.22218803410712	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTCAACCACTTCCTCCA	NA	False	NA	16	True	AATAAA	-18	NA	32477106	32489710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32477240_32477592_32477694_32479456_32479643_32484001_32484415_32485705_32485814_32487025
transcript_73651.known	chr2	+	2361	7	FSM	ENSMUSG00000026811.19	ENSMUST00000183538.8	2361	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	29.5390513651938	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTCTGTGTCTTTA	3383	False	NA	7	True	AATAAA	-16	NA	32497051	32510818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32497124_32498053_32498109_32499237_32499329_32502235_32502416_32504792_32505181_32508508_32508617_32509351
transcript_73653.known	chr2	+	2536	7	FSM	ENSMUSG00000026811.19	ENSMUST00000095045.9	2536	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	37.4718412796714	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3354	False	NA	5	True	AATAAA	-14	NA	32497022	32510816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32497124_32498053_32498238_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
transcript_73655.nnic	chr2	+	2392	6	NIC	ENSMUSG00000026811.19	novel	2394	7	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	41.0482642751189	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTCTGTGTCTTTA	3280	False	NA	7	True	AATAAA	-16	NA	32496948	32510818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_32497124_32498053_32498109_32502235_32502416_32504792_32505200_32508508_32508617_32509351
transcript_73658.known	chr2	+	2402	6	FSM	ENSMUSG00000026811.19	ENSMUST00000113290.8	2402	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	35.6202189774291	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGTGTTCTGTGTCTT	3304	False	NA	5	True	AATAAA	-14	NA	32496972	32510816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32497124_32499237_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
transcript_73660.nic	chr2	+	2339	5	NIC	ENSMUSG00000026811.19	novel	2394	7	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	26.3569250862084	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTCTGTGTCTTTA	3278	False	NA	7	True	AATAAA	-16	NA	32496946	32510818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_32497124_32502235_32502416_32504792_32505200_32508508_32508617_32509351
transcript_73667.known	chr2	+	438	3	FSM	ENSMUSG00000026811.19	ENSMUST00000126636.8	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	25.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTGCTGCGGAAGCCCCA	3386	False	NA	NA	False	NA	NA	NA	32497054	32504981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32497124_32502235_32502416_32504792
transcript_7367.known	chr1	+	4418	35	FSM	ENSMUSG00000039318.13	ENSMUST00000194740.6	4418	35	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_25	17.4221203306776	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATGCAGATGCTTTATT	NA	False	NA	88	True	TATAAA	-19	NA	184936313	185016382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999212_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
transcript_73670.known	chr2	+	2063	7	FSM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	98.788775790685	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32515448	32525066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32515551_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_73677.nic	chr2	+	2214	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2761	0	-192	0	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32518209	32525066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_73679.known	chr2	+	2034	6	FSM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	85.0895998345274	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAGAAGTGAGTGTATT	NA	False	NA	11	True	AATAAA	-15	NA	32519515	32525064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_7369.known	chr1	+	7052	35	FSM	ENSMUSG00000039318.13	ENSMUST00000069652.8	7052	35	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_28	11.2668558845177	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGTGTCTGTCTCTGA	NA	False	NA	NA	False	AATAAA	-34	NA	184936313	185018956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999272_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
transcript_73693.known	chr2	+	3403	15	FSM	ENSMUSG00000026814.17	ENSMUST00000167841.8	3403	15	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	47.9038684475993	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTTCCAGCAACACAG	582	False	NA	NA	False	AATAAA	-24	NA	32536633	32572681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32537037_32547530_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207_32571310_32571448
transcript_73700.known	chr2	-	2273	15	FSM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_8	41.2442327446381	1193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTATTCTCCTAGCTCCC	NA	False	NA	-13	True	AATAAA	-20	NA	32584197	32572620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
transcript_73707.known	chr2	+	3021	14	FSM	ENSMUSG00000026814.17	ENSMUST00000113272.8	3021	14	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	25.0613448545197	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCCCCTCTGGGTTGT	555	False	NA	25	True	AATAAA	-13	NA	32536606	32572130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32537037_32547527_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207
transcript_73721.known	chr2	-	2404	13	FSM	ENSMUSG00000009566.13	ENSMUST00000130164.8	2404	13	0	0	0	0	multi-exon	FALSE	canonical	3	298	junction_5	36.3440351211707	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTATTCTCCTAGCTCC	NA	False	NA	-14	True	AATAAA	-19	NA	32584147	32572621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
transcript_73735.known	chr2	-	1733	7	FSM	ENSMUSG00000009555.17	ENSMUST00000009699.16	1733	7	0	0	0	0	multi-exon	FALSE	canonical	3	1063	junction_2	88.3259430870807	795	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCGTTTCCTGTGTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	32602796	32597449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
transcript_73736.known	chr2	+	3092	12	FSM	ENSMUSG00000059013.13	ENSMUST00000074248.11	3092	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.97763593527412	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGTCCCATGAGGCCT	2001	False	NA	NA	False	AATAAA	-15	NA	32611066	32645006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32611208_32614948_32615412_32627530_32627571_32634762_32634892_32635846_32636302_32637033_32637159_32639164_32639698_32640963_32641080_32641525_32641698_32642625_32642738_32643000_32643208_32644407
transcript_73737.known	chr2	+	3107	11	FSM	ENSMUSG00000059013.13	ENSMUST00000113242.5	3107	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.98622628559895	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATCTTTAAACTGG	1545	False	NA	NA	False	NA	NA	NA	32617717	32645524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32617819_32627530_32627571_32634762_32634892_32635846_32636302_32637033_32637159_32639164_32639698_32640963_32641080_32641525_32641698_32642625_32642738_32643000_32643208_32644407
transcript_73741.known	chr2	+	1536	5	FSM	ENSMUSG00000009563.17	ENSMUST00000009707.14	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	20.9105236663265	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGACCAAAGTTTCTTAC	589	False	NA	9	True	AATAAA	-20	NA	32647245	32652256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32647463_32648682_32648949_32649538_32649715_32650600_32650729_32651507
transcript_73743.known	chr2	+	915	5	FSM	ENSMUSG00000009563.17	ENSMUST00000156617.8	915	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	95.4214336509361	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTCTGAGAAGCCCAGG	610	False	NA	NA	False	NA	NA	NA	32647266	32651742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32647463_32648768_32648949_32649538_32649715_32650600_32650729_32651507
transcript_73746.known	chr2	+	2712	4	FSM	ENSMUSG00000009563.17	ENSMUST00000149720.3	2712	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_3	10.6562449087639	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGACCAAAGTTTCTT	631	False	NA	7	True	AATAAA	-18	NA	32647287	32652254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32648949_32649538_32649715_32650600_32650729_32651507
transcript_73748.known	chr2	+	952	5	FSM	ENSMUSG00000053746.9	ENSMUST00000066352.6	952	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	3.34477204006491	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGCTTCCTGTGGGGT	8191	False	NA	6	True	ATTAAA	-16	NA	32665797	32667609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32665908_32666315_32666536_32666718_32666819_32666994_32667041_32667133
transcript_7375.known	chr1	-	5471	23	FSM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	0	0	0	0	multi-exon	TRUE	canonical	3	288	junction_20	32.2887284275964	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTCTTTGCTTTGTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	185061593	185016922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_185019389_185020236_185020382_185021549_185021741_185022682_185022829_185023515_185023623_185026940_185027073_185027751_185027878_185028607_185028711_185029669_185029779_185034904_185034999_185035495_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
transcript_73751.known	chr2	+	908	4	FSM	ENSMUSG00000053746.9	ENSMUST00000138214.2	908	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	3.85861230093008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGCCACATCAGTCTGT	8270	False	NA	NA	False	NA	NA	NA	32665876	32667461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32665908_32666315_32666819_32666994_32667041_32667133
transcript_73752.known	chr2	-	3892	19	FSM	ENSMUSG00000026797.17	ENSMUST00000050000.16	3892	19	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	6.44827472379863	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAGAGCTTCTTTTCAA	5149	False	NA	NA	False	AATAAA	-23	NA	32737257	32677613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32679650_32686027_32686183_32688116_32688203_32690591_32690694_32691831_32691942_32692765_32692905_32696080_32696162_32696732_32696799_32698013_32698075_32699112_32699221_32701116_32701248_32702032_32702118_32704890_32705040_32707297_32707402_32708438_32708518_32709845_32709923_32711846_32711929_32713547_32713598_32737066
transcript_73760.nnic	chr2	-	3977	26	NIC	ENSMUSG00000026792.17	novel	4030	26	NA	NA	-20	0	combination_of_known_splicesites	TRUE	canonical	1	3	junction_25	6.16389487256231	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGTTTGCATAGATTCT	NA	False	NA	-1	True	AATAAA	-25	NA	32851646	32815227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32851055_32851191_32851573
transcript_73763.known	chr2	-	4030	26	FSM	ENSMUSG00000026792.17	ENSMUST00000113200.8	4030	26	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_16	3.74165738677394	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTACACAGTTTGCATAGA	NA	False	NA	-5	True	AATAAA	-21	NA	32851626	32815231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32851055_32851268_32851573
transcript_73774.known	chr2	+	3714	14	FSM	ENSMUSG00000026796.17	ENSMUST00000028135.15	3714	14	0	0	0	0	multi-exon	TRUE	canonical	3	292	junction_12	30.0169577319103	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTCATGTGCTGCTGGG	8857	False	NA	19	True	AATAAA	-19	NA	32766125	32815266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32766417_32795780_32795912_32799860_32799990_32801352_32801459_32802431_32802600_32809004_32809121_32809507_32809613_32809714_32809878_32810964_32811153_32812080_32812237_32812569_32812687_32812867_32812976_32813058_32813171_32813442
transcript_73777.known	chr2	+	1242	7	FSM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_6	1457.06650690885	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAATTGTTGGGGCTGCA	5641	False	NA	24	True	AATAAA	-25	NA	32851570	32854508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
transcript_73778.known	chr2	+	729	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGGCTTGGCTGCTTTTT	5822	False	NA	22	True	AATAAA	-21	NA	32851751	32854055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
transcript_73780.nic	chr2	+	1109	6	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-49	0	intron_retention	FALSE	canonical	3	2580	junction_5	1481.81753262674	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5753	False	NA	24	True	AATAAA	-23	NA	32851682	32854057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
transcript_73785.nic	chr2	+	1275	5	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-58	0	intron_retention	FALSE	canonical	3	2580	junction_4	1523.82780769351	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5744	False	NA	24	True	AATAAA	-23	NA	32851673	32854057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853866_32854002
transcript_73788.known	chr2	+	600	4	FSM	ENSMUSG00000038900.18	ENSMUST00000125415.3	600	4	0	0	0	0	multi-exon	FALSE	canonical	3	5241	junction_1	528.984771887517	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTGGCTGGTGCAATC	5822	False	NA	NA	False	NA	NA	NA	32851751	32853323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996
transcript_73790.known	chr2	+	1417	4	FSM	ENSMUSG00000038900.18	ENSMUST00000154340.8	1417	4	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_3	1756.95310757636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5811	False	NA	24	True	AATAAA	-23	NA	32851740	32854057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32852135_32852585_32852685_32852996_32853866_32854002
transcript_73791.known	chr2	+	2863	3	FSM	ENSMUSG00000038900.18	ENSMUST00000134912.7	2863	3	0	0	0	0	multi-exon	FALSE	canonical	3	6045	junction_1	239	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5802	False	NA	NA	False	NA	NA	NA	32851731	32855357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_32852135_32852585_32852685_32852996
transcript_73794.known	chr2	-	2108	10	FSM	ENSMUSG00000026791.15	ENSMUST00000028129.13	2108	10	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	8.32666399786453	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTCAGTGGAGCCAGA	3950	False	NA	-13	True	AATAAA	-15	NA	32872094	32863001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32865931_32866041_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
transcript_73799.known	chr2	-	1339	9	FSM	ENSMUSG00000026791.15	ENSMUST00000193695.2	1339	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	58.5742050735646	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCCTGGGAGCCCCGAG	4015	False	NA	NA	False	NA	NA	NA	32872029	32863596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
transcript_738.known	chr1	-	1975	14	FSM	ENSMUSG00000026134.12	ENSMUST00000027312.11	1975	14	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_10	82.0868352460372	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	NA	False	NA	-2	True	AATAAA	-18	NA	33708876	33492890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
transcript_73817.nic	chr2	-	3827	30	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_11	18.462418040573	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTACTGCCTGTTCAC	NA	False	NA	NA	False	TATAAA	-18	NA	33020685	32876235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_32876843_32879517_32879645_32880575_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33020435
transcript_73819.nic	chr2	-	3660	30	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_11	18.462418040573	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTCTGCAACCCTTCTC	NA	False	NA	-10	True	AATAAA	-18	NA	33020668	32876385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_32876843_32879517_32879645_32880575_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33020435
transcript_73827.nic	chr2	-	3374	28	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	-43	-3887	combination_of_known_junctions	FALSE	canonical	3	63	junction_9	18.5239251366749	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATCTTTTAAAGGGGGG	NA	False	NA	NA	False	NA	NA	NA	33020663	32880272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33020435
transcript_73838.known	chr2	-	2738	20	FSM	ENSMUSG00000038831.17	ENSMUST00000091039.5	2738	20	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	10.7559170084433	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCGTGTCTTGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	33261490	33026984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33045299_33045352_33047783_33047942_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
transcript_73842.known	chr2	-	6035	18	FSM	ENSMUSG00000038831.17	ENSMUST00000131298.7	6035	18	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	7.39259893617541	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTCTATTTATTAGTGTC	NA	False	NA	NA	False	ATTAAA	-19	NA	33261441	33023428	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
transcript_73845.known	chr2	-	1989	8	FSM	ENSMUSG00000038831.17	ENSMUST00000113164.3	1989	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	7.60504665954638	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	33261482	33149375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
transcript_73846.known	chr2	+	3339	5	FSM	ENSMUSG00000004105.9	ENSMUST00000004208.7	3339	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.11803398874989	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCCACACTGTGTGCTG	NA	False	NA	NA	False	AATAAA	-21	NA	33106080	33137729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_33106466_33118186_33119045_33132211_33132406_33133690_33133962_33136098
transcript_73848.known	chr2	-	664	2	FSM	ENSMUSG00000068966.11	ENSMUST00000134589.2	664	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACAAAGCCCTTCGGAG	NA	False	NA	NA	False	NA	NA	NA	33321329	33301930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_33302508_33321242
transcript_73851.known	chr2	-	1828	4	FSM	ENSMUSG00000026788.14	ENSMUST00000113156.2	1828	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	10.6770782520313	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTCTCATCCTGGCC	NA	False	NA	NA	False	ATTAAA	-20	NA	33358517	33343533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_33345136_33352277_33352370_33354925_33354987_33358444
transcript_73857.known	chr2	-	4998	3	FSM	ENSMUSG00000026788.14	ENSMUST00000028125.12	4998	3	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_1	8.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTGTTTTCACTCAT	NA	False	NA	-1	True	AATAAA	-25	NA	33358544	33340298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_33345136_33354925_33354987_33358444
transcript_73858.known	chr2	-	487	3	FSM	ENSMUSG00000026788.14	ENSMUST00000126442.2	487	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	3.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCCGATGTAATGAACCC	NA	False	NA	NA	False	AAAACA	-15	NA	33358571	33344899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_33345136_33354925_33355050_33358444
transcript_7386.nic	chr1	+	2246	20	ISM	ENSMUSG00000039318.13	ENSMUST00000194740.6	4418	35	-46	24792	-46	-22302	5prime_fragment	FALSE	canonical	3	82	junction_19	9.18417282453429	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAAAGCCACCGTGCGCT	NA	False	NA	NA	False	TATAAA	-9	NA	184936267	184991590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510
transcript_73867.known	chr2	+	390	2	FSM	ENSMUSG00000086939.2	ENSMUST00000134014.2	390	2	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATAGATTATCACTAC	NA	False	NA	NA	False	AATAAA	-16	NA	33379793	33393644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_33379998_33393458
transcript_73868.known	chr2	-	4998	10	FSM	ENSMUSG00000038740.10	ENSMUST00000041555.10	4998	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	24.5990063033268	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAGTTTGCTGTTATTT	3749	False	NA	-1	True	AATAAA	-20	NA	33777958	33619964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_33623544_33642320_33642381_33645001_33645058_33692756_33692852_33715059_33715183_33717693_33717824_33724548_33724646_33730170_33730279_33764349_33764473_33777331
transcript_73870.known	chr2	-	520	3	FSM	ENSMUSG00000038740.10	ENSMUST00000146892.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	8	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGCTGAAGTGTGTTTT	4213	False	NA	-5	True	AATAAA	-15	NA	33777494	33763625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_33763860_33764349_33764473_33777331
transcript_73872.nnic	chr2	-	1682	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80949	-903	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGTTTACCCTCAAGA	NA	False	NA	NA	False	NA	NA	NA	33916792	33909203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_33910509_33915810_33915970_33916574
transcript_7388.nic	chr1	-	2607	18	ISM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	-25	9852	-25	460	5prime_fragment	FALSE	canonical	3	288	junction_15	34.0313309744017	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGGATTTTTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	185061618	185026774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_185027073_185027751_185027878_185028607_185028711_185029669_185029779_185034904_185034999_185035495_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
transcript_73880.known	chr2	+	3111	12	FSM	ENSMUSG00000038696.15	ENSMUST00000147337.8	3111	12	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_6	16.5988150527989	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTGTATATTGCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	34297194	34514961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_34297267_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
transcript_73886.known	chr2	+	1630	11	FSM	ENSMUSG00000038696.15	ENSMUST00000124443.8	1630	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	60.6699266523374	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAACAAAGAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	34296873	34513487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_34297267_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
transcript_73895.nic	chr2	+	1990	10	NIC	ENSMUSG00000038696.15	novel	3111	12	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	57.8179347628996	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGTATGATGGACCATT	NA	False	NA	26	True	AATAAA	-20	NA	34296867	34513931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_34297267_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
transcript_73896.nic	chr2	+	3020	10	NIC	ENSMUSG00000038696.15	novel	3111	12	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	57.8179347628996	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTGTATATTGCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	34296867	34514961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_34297267_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
transcript_739.nnic	chr1	-	1939	14	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_13	105.020031901498	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	NA	False	NA	-2	True	AATAAA	-18	NA	33708870	33492890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708734
transcript_73915.known	chr2	-	5695	26	FSM	ENSMUSG00000026867.20	ENSMUST00000028224.15	5695	26	0	0	0	0	multi-exon	FALSE	canonical	2	111	junction_18	27.1558465159899	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	5780	False	NA	NA	False	NA	NA	NA	34644573	34566996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607327_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
transcript_73918.known	chr2	+	3672	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	0	0	0	0	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTACATTGCAACTCTTT	NA	False	NA	NA	False	AATGAA	-16	NA	34661981	34667559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
transcript_73925.known	chr2	+	2613	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	0	0	0	0	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662106	34666543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
transcript_73934.nic	chr2	+	971	6	ISM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	122	3305	-3	50	5prime_fragment	FALSE	canonical	3	1920	junction_1	280.895425381048	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGTAAAGATGTTAGGAAA	NA	False	NA	NA	False	AAAAAG	-5	NA	34662103	34664254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039
transcript_73936.nic	chr2	+	1099	5	ISM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	-49	2289	-49	50	5prime_fragment	FALSE	canonical	3	2314	junction_3	174.904795531741	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGTAAAGATGTTAGGAAA	NA	False	NA	NA	False	AAAAAG	-5	NA	34662057	34664254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039
transcript_7394.known	chr1	+	1226	10	FSM	ENSMUSG00000026617.17	ENSMUST00000210277.2	1226	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_7	59.2152382790481	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATACGCTTAAGACTT	NA	False	NA	3	True	ATTAAA	-17	NA	185064368	185088978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
transcript_73947.known	chr2	-	1431	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCCACATTTGTATTA	2821	False	NA	-42	True	NA	NA	NA	34689740	34669248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
transcript_73948.known	chr2	-	2968	8	FSM	ENSMUSG00000070953.14	ENSMUST00000145903.8	2968	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_7	62.9123134503371	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAGTCACACACAAGAAAA	2637	False	NA	NA	False	AATAAA	-10	NA	34689924	34667567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689762
transcript_73956.known	chr2	-	1838	8	FSM	ENSMUSG00000035949.16	ENSMUST00000091020.10	1838	8	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_6	107.582336764329	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTTGTTCTTTGAAATT	9196	False	NA	-4	True	ATTAAA	-14	NA	34716247	34695350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34712988_34715973_34716083_34716183
transcript_73959.known	chr2	-	1923	8	FSM	ENSMUSG00000035949.16	ENSMUST00000113080.9	1923	8	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	72.0294724259395	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCTTTGTTCTTTGAAA	9201	False	NA	-6	True	ATTAAA	-12	NA	34716242	34695352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973_34716083_34716183
transcript_73972.known	chr2	-	1930	4	FSM	ENSMUSG00000035949.16	ENSMUST00000131534.8	1930	4	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_3	100.641277151409	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCCAGCTCCAATATGTT	9120	False	NA	NA	False	NA	NA	NA	34716323	34701850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34703022_34712569_34713080_34715973_34716083_34716183
transcript_7398.known	chr1	+	2200	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_6	39.6957176531676	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064345	185089974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
transcript_73983.known	chr2	-	852	2	FSM	ENSMUSG00000035949.16	ENSMUST00000126051.2	852	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAAAGCAAAACAAA	9216	False	NA	NA	False	NA	NA	NA	34716227	34715274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34716083_34716183
transcript_73984.known	chr2	-	988	3	FSM	ENSMUSG00000035949.16	ENSMUST00000145660.8	988	3	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_2	91	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTTTGTTTGTTTGTTC	9264	False	NA	NA	False	NA	NA	NA	34716179	34702749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34703022_34712569_34713080_34715973
transcript_73985.known	chr2	-	2260	7	FSM	ENSMUSG00000035949.16	ENSMUST00000113075.8	2260	7	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_6	77.5026881254235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATAAGTTAACCTGTAG	9230	False	NA	NA	False	AATAAA	-18	NA	34716213	34696264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973_34716083_34716183
transcript_73986.nnic	chr2	-	2010	10	NNC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_6	175.514974212571	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGTTGGTATTCCG	NA	False	NA	-14	True	AATAAA	-14	NA	34760986	34742113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753548_34755538_34755668_34755993_34756108_34756904_34757050_34760761
transcript_73987.known	chr2	-	4397	10	FSM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	0	0	0	0	multi-exon	FALSE	canonical	3	516	junction_4	38.498997902623	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCCAAGAGAAAGCTAGCT	NA	False	NA	NA	False	NA	NA	NA	34760974	34739745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
transcript_73994.nnic	chr2	-	1906	9	NIC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	104	junction_8	158.265945089271	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGTTGGTATTCCG	NA	False	NA	-14	True	AATAAA	-14	NA	34760996	34742113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34760761
transcript_74.known	SIRV2	-	1971	11	FSM	SIRV2A	SIRV202	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCTCTATAGCTGTATC	NA	False	NA	NA	False	NA	NA	NA	5911	1035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
transcript_74004.known	chr2	-	3741	15	FSM	ENSMUSG00000026873.10	ENSMUST00000028232.7	3741	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	4.03871569806491	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGCGTGTCCTTGGAGC	3687	False	NA	-17	True	ATTAAA	-28	NA	34803988	34783768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34786074_34787068_34787165_34788085_34788172_34788935_34789024_34789594_34789757_34791071_34791140_34793147_34793269_34793363_34793433_34794066_34794163_34795461_34795611_34796469_34796571_34797016_34797113_34801175_34801258_34801628_34801815_34803952
transcript_7401.nic	chr1	+	2110	9	NIC	ENSMUSG00000026617.17	novel	1226	10	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	92.0101047439899	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064353	185089974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
transcript_74010.known	chr2	-	2325	11	FSM	ENSMUSG00000026875.15	ENSMUST00000113064.8	2325	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	3.16385840391127	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTCAGGTGTGAGACCA	NA	False	NA	NA	False	AAAACA	-23	NA	34851784	34833269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_34834104_34835409_34835559_34836693_34836872_34838152_34838564_34839050_34839117_34846207_34846293_34847970_34848119_34848524_34848624_34849486_34849526_34850832_34850900_34851535
transcript_74016.known	chr2	+	7085	44	FSM	ENSMUSG00000057110.16	ENSMUST00000113032.8	7085	44	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_18	32.6476841716826	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACAGCCATGTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	34999630	35068434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316_35017543_35017939_35018050_35019632_35019828_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068_35035249_35037246_35037424_35038502_35038620_35038882_35039028_35039457_35039607_35041691_35041882_35043168_35043486_35045262_35045472_35047607_35047801_35050259_35050391_35050532_35050674_35050802_35050930_35051940_35052106_35052772_35052933_35055458_35055575_35055659_35055878_35057742_35057901_35059253_35059328_35060470_35060660_35061032_35061259_35061849_35062056_35063028_35063170_35065120_35065385_35065549_35065613_35066139_35066335_35068050_35068123_35068408
transcript_74017.nnic	chr2	+	6010	34	NNC	ENSMUSG00000057110.16	novel	5970	34	NA	NA	-94	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	20.7397623189571	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCAGGTTACCTTTATTC	NA	False	NA	22	True	AATAAA	-25	NA	35022151	35068834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_35022369_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068_35035249_35037243_35037424_35038502_35038620_35038882_35039028_35039457_35039607_35041691_35041882_35043168_35043486_35045262_35045472_35047607_35047801_35050259_35050391_35050532_35050674_35050802_35050930_35051940_35052106_35052772_35052933_35055458_35055575_35055659_35055878_35057742_35057901_35059253_35059328_35060470_35060660_35061032_35061259_35061849_35062056_35063028_35063170_35065120_35065385_35065549_35065613_35066139_35066335_35068050_35068123_35068408
transcript_74023.nnic	chr2	+	3125	18	NNC	ENSMUSG00000057110.16	novel	3148	18	NA	NA	-94	-60	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	15.6280291181469	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTGAAAGAAATAAACAAA	NA	False	NA	NA	False	AAGAAA	-1	NA	35022151	35050588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_35022369_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068_35035249_35037243_35037424_35038502_35038620_35038882_35039028_35039457_35039607_35041691_35041882_35043168_35043486_35045262_35045472_35047607_35047801_35050259_35050391_35050532
transcript_74027.known	chr2	+	2734	11	FSM	ENSMUSG00000057110.16	ENSMUST00000028235.11	2734	11	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_10	5.89576118919347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCTAAGCCTTGGTATT	NA	False	NA	NA	False	TATAAA	-15	NA	34999503	35020739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316_35017543_35017939_35018050_35019632
transcript_74032.nic	chr2	+	1508	9	ISM	ENSMUSG00000057110.16	ENSMUST00000028235.11	2734	11	0	3206	0	-3206	5prime_fragment	FALSE	canonical	3	40	junction_6	4.59449398737228	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTGCAGGTAAACAGAGG	NA	False	NA	NA	False	NA	NA	NA	34999503	35017533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316
transcript_74033.nnic	chr2	+	1340	8	NNC	ENSMUSG00000057110.16	novel	1817	9	NA	NA	-94	-2533	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	18.5615358266739	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATGGAAAAAATCCAAGGC	NA	False	NA	NA	False	AATGAA	-29	NA	35022151	35035150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_35022369_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068
transcript_74034.nic	chr2	+	1102	7	ISM	ENSMUSG00000057110.16	ENSMUST00000028235.11	2734	11	0	7943	0	-7943	5prime_fragment	FALSE	canonical	3	40	junction_6	4.85626742811116	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGCCATGTTACAAAA	NA	False	NA	NA	False	AATAAA	-32	NA	34999503	35012796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671
transcript_74039.known	chr2	-	3081	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	9552	False	NA	NA	False	AATAAA	-26	NA	35091132	35070216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
transcript_7404.known	chr1	+	1046	8	FSM	ENSMUSG00000026617.17	ENSMUST00000110965.2	1046	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	90.255872102482	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATACGCTTAAGACTT	NA	False	NA	3	True	ATTAAA	-17	NA	185064376	185088978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
transcript_74055.known	chr2	+	2607	18	FSM	ENSMUSG00000026879.15	ENSMUST00000201185.4	2607	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	7.49855810822468	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCCCCAGGTGTCTCA	NA	False	NA	NA	False	AATAAA	-15	NA	35146391	35197902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_35146486_35156831_35156916_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
transcript_74056.nic	chr2	+	2589	17	ISM	ENSMUSG00000026879.15	ENSMUST00000201185.4	2607	18	10366	-2	10297	0	3prime_fragment	FALSE	canonical	3	17	junction_1	5.90517516674992	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCCCAGGTGTCTCACT	5157	False	NA	NA	False	AATAAA	-17	NA	35156757	35197904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_35156916_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
transcript_74057.known	chr2	+	2653	17	FSM	ENSMUSG00000026879.15	ENSMUST00000028239.8	2653	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.42591797669548	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCCCAGGTGTCTCACT	NA	False	NA	NA	False	AATAAA	-17	NA	35172391	35197904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_35172614_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
transcript_74058.known	chr2	+	1621	1	FSM	ENSMUSG00000106961.2	ENSMUST00000202212.2	1621	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAGAAAGAAAAAATGTC	NA	False	NA	NA	False	NA	NA	NA	35170401	35172022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_35170400_35172000
transcript_74059.known	chr2	-	2787	7	FSM	ENSMUSG00000026880.12	ENSMUST00000028241.7	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	5.5876848714134	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGTGAGTCTTGTTTCT	NA	False	NA	0	True	AATAAA	-20	NA	35226988	35203997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_35206068_35210342_35210478_35211494_35211699_35213675_35213759_35215325_35215399_35216432_35216537_35226870
transcript_74060.nic	chr2	-	3497	9	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_8	26.2678510731274	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	1157	False	NA	-3	True	AATAAA	-13	NA	35335853	35290194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35335707
transcript_74061.known	chr2	-	3606	9	FSM	ENSMUSG00000035778.18	ENSMUST00000102794.8	3606	9	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	26.0836994117016	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	NA	False	NA	-3	True	AATAAA	-13	NA	35351461	35290194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35351206
transcript_74062.nic	chr2	-	3846	9	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	392	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_8	26.4548554144603	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	NA	False	NA	-3	True	AATAAA	-13	NA	35352851	35290194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35352356
transcript_74069.nic	chr2	-	4010	8	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	-557	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_7	27.4531140198659	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	608	False	NA	-3	True	AATAAA	-13	NA	35336402	35290194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35335707
transcript_7407.known	chr1	+	4906	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTGGTTCATCCTGCA	NA	False	NA	22	True	AATAAA	-24	NA	185095240	185160557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
transcript_74070.known	chr2	-	3391	8	FSM	ENSMUSG00000035778.18	ENSMUST00000113002.9	3391	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	27.2381784880513	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTCTGGTATGGATTA	NA	False	NA	1	True	AATAAA	-17	NA	35351278	35290190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35351206
transcript_74071.nic	chr2	-	3810	8	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	392	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_7	27.6708053621096	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	NA	False	NA	-3	True	AATAAA	-13	NA	35352851	35290194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35352356
transcript_74075.known	chr2	-	3340	8	FSM	ENSMUSG00000035778.18	ENSMUST00000113001.9	3340	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	33.733045628092	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	NA	False	NA	-3	True	AATAAA	-13	NA	35351261	35290194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35351206
transcript_74084.nic	chr2	-	3349	7	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	32.0646049233246	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	NA	False	NA	-3	True	AATAAA	-13	NA	35351306	35290194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525_35322645_35351206
transcript_74085.nic	chr2	-	3744	7	NIC	ENSMUSG00000035778.18	novel	3340	8	NA	NA	392	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	32.4846117415616	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	NA	False	NA	-3	True	AATAAA	-13	NA	35352851	35290194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525_35322645_35352356
transcript_74087.nic	chr2	-	3343	7	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	700	-93	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	32.4846117415616	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAGTAAGCTTAGGATT	NA	False	NA	-96	True	AATAAA	-22	NA	35352543	35290287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525_35322645_35352356
transcript_74098.known	chr2	-	3254	6	FSM	ENSMUSG00000035778.18	ENSMUST00000079424.11	3254	6	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_3	29.2054789380349	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTCTGGTATGGATTA	NA	False	NA	1	True	AATAAA	-17	NA	35322645	35290190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525
transcript_741.nnic	chr1	-	1431	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-13303	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	102.591723488764	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	4363	False	NA	-2	True	AATAAA	-18	NA	33675708	33492890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33675612
transcript_74108.nnic	chr2	+	6298	16	NNC	ENSMUSG00000026883.18	novel	6219	15	NA	NA	-11370	0	intron_retention	FALSE	canonical	3	14	junction_1	70.1929404490857	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGACTTGCCTTTCTTCA	4416	False	NA	11	True	ATTAAA	-21	NA	35500622	35621006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_35500706_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
transcript_74110.known	chr2	+	6455	16	FSM	ENSMUSG00000026883.18	ENSMUST00000091010.12	6455	16	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	68.7589670919769	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAGCCTGACTTGCCT	8522	False	NA	4	True	ATTAAA	-14	NA	35512048	35620999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_35512296_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
transcript_74117.known	chr2	+	6392	14	FSM	ENSMUSG00000026883.18	ENSMUST00000065001.12	6392	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	58.8774677870724	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGACTTGCCTTTCTT	379	False	NA	9	True	ATTAAA	-19	NA	35582005	35621004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_35582423_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
transcript_74123.nnic	chr2	+	1165	6	NNC	ENSMUSG00000026883.18	novel	6219	15	NA	NA	545	123	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	113.442496446438	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACGCAACAGCTACCTGG	NA	False	NA	NA	False	AAAAAG	-6	NA	35471616	35600068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_35472052_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829
transcript_74124.nic	chr2	+	1004	6	ISM	ENSMUSG00000026883.18	ENSMUST00000135741.8	4128	17	-64	20936	-64	123	5prime_fragment	FALSE	canonical	3	33	junction_1	108.041473518274	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACGCAACAGCTACCTGG	NA	False	NA	NA	False	AAAAAG	-6	NA	35472787	35600068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_35473062_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829
transcript_74126.nnic	chr2	+	1050	6	NNC	ENSMUSG00000026883.18	novel	6219	15	NA	NA	-11607	123	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	113.442496446438	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACGCAACAGCTACCTGG	4179	False	NA	NA	False	AAAAAG	-6	NA	35500385	35600068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_35500706_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829
transcript_74128.nic	chr2	+	1037	6	ISM	ENSMUSG00000026883.18	ENSMUST00000091010.12	6455	16	-60	20931	-4	123	5prime_fragment	FALSE	canonical	3	22	junction_1	111.137032531915	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACGCAACAGCTACCTGG	8462	False	NA	NA	False	AAAAAG	-6	NA	35511988	35600068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_35512296_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829
transcript_74129.known	chr2	+	6649	16	FSM	ENSMUSG00000026883.18	ENSMUST00000145698.8	6649	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	77.7277299295432	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGACTTGCCTTTCTT	8466	False	NA	9	True	ATTAAA	-19	NA	35511992	35621004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_35512296_35533899_35534137_35551503_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
transcript_74133.nic	chr2	+	1035	4	ISM	ENSMUSG00000026883.18	ENSMUST00000065001.12	6392	14	-126	20936	-126	123	5prime_fragment	FALSE	canonical	3	30	junction_1	113.157707058188	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACGCAACAGCTACCTGG	253	False	NA	NA	False	AAAAAG	-6	NA	35581879	35600068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_35582423_35597659_35597814_35598825_35598925_35599829
transcript_74138.known	chr2	-	861	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	831	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTGTTTTATTATGCT	NA	False	NA	-1	True	ATTAAA	-15	NA	35939418	35926337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
transcript_74144.known	chr2	+	2623	7	FSM	ENSMUSG00000026887.10	ENSMUST00000028250.9	2623	7	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	20.1941960858945	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCAGGGTCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	36026400	36080659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_36026712_36031457_36031670_36037914_36038071_36043604_36043724_36049610_36049703_36067126_36067287_36079086
transcript_74148.known	chr2	-	2617	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	-23	True	AATAAA	-16	NA	36026785	36006090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
transcript_74151.known	chr2	-	781	5	FSM	ENSMUSG00000026889.13	ENSMUST00000122456.8	781	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	119.472538685675	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAATAGGAATGTGTCC	NA	False	NA	-40	True	NA	NA	NA	36026623	36007637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36024146_36024276_36026493
transcript_74152.nic	chr2	-	1291	3	ISM	ENSMUSG00000026889.13	ENSMUST00000134668.2	714	6	4	8452	0	0	5prime_fragment	FALSE	canonical	3	277	junction_2	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	36026623	36016231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_36017264_36024146_36024276_36026493
transcript_74153.known	chr2	-	567	1	FSM	ENSMUSG00000083716.5	ENSMUST00000120418.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	NA	False	NA	NA	False	NA	NA	NA	36698404	36697837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_36697800_36698400
transcript_74154.known	chr2	-	685	5	FSM	ENSMUSG00000009030.15	ENSMUST00000147703.3	685	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	84.8130296593631	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGACTGAAGCCATGAATGG	NA	False	NA	NA	False	AAAAAG	-41	NA	37249208	37242169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37248363_37248411_37249154
transcript_74156.known	chr2	-	3056	4	FSM	ENSMUSG00000009030.15	ENSMUST00000112940.8	3056	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	79.6366749682582	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGATATTTAAAAGCCA	NA	False	NA	-19	True	AATAAA	-10	NA	37249265	37240599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37248363
transcript_74157.known	chr2	-	2858	4	FSM	ENSMUSG00000009030.15	ENSMUST00000009174.15	2858	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.3527000944073	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTGTATATTAGATATTT	NA	False	NA	-7	True	AATAAA	-20	NA	37249344	37240085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37249154
transcript_74163.known	chr2	-	5267	2	FSM	ENSMUSG00000050714.10	ENSMUST00000067043.5	5267	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTGTCATTGACTTC	NA	False	NA	2	True	AATAAA	-14	NA	37333133	37322179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_37327012_37332698
transcript_74165.known	chr2	+	4967	26	FSM	ENSMUSG00000035437.16	ENSMUST00000061179.12	4967	26	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	34.3579743291132	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGCTTCATACAAAAGTA	1545	False	NA	7	True	ATTAAA	-18	NA	37333296	37456449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
transcript_74167.known	chr2	+	4847	26	FSM	ENSMUSG00000035437.16	ENSMUST00000112920.2	4847	26	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	33.7498088883478	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTTTATGTTTGCATAT	NA	False	NA	24	True	ATTAAA	-35	NA	37342278	37456466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
transcript_74174.nic	chr2	+	2907	23	ISM	ENSMUSG00000035437.16	ENSMUST00000112920.2	4847	26	-48	5030	-26	-3629	5prime_fragment	FALSE	canonical	3	120	junction_1	35.4769160194053	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCTATCATTGGTGACT	NA	False	NA	NA	False	ATTAAA	-6	NA	37342230	37451436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380
transcript_74181.nnic	chr2	+	3336	20	NNC	ENSMUSG00000035437.16	novel	4847	26	NA	NA	-26	3375	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_19	62.4127535088304	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGGGCCTTGGCTACTA	NA	False	NA	NA	False	AATAAA	-20	NA	37342230	37438349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37437555
transcript_74183.nic	chr2	+	2617	19	ISM	ENSMUSG00000035437.16	ENSMUST00000061179.12	4967	26	-23	23243	-17	-1768	5prime_fragment	FALSE	canonical	3	116	junction_1	36.5419174154157	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAAGAGGCTCATGGAGC	1522	False	NA	NA	False	AAGAAA	-2	NA	37333273	37433206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114
transcript_74185.known	chr2	+	4247	19	FSM	ENSMUSG00000035437.16	ENSMUST00000066055.10	4247	19	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	35.7809263624913	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATATATATTTAATTTA	NA	False	NA	NA	False	NA	NA	NA	37342256	37434974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114
transcript_7419.nic	chr1	+	3310	21	ISM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	-88	18146	-88	15	5prime_fragment	FALSE	canonical	3	1945	junction_14	260.900608469969	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCCGAATGGTACTCTC	NA	False	NA	NA	False	AAAAAG	-8	NA	185095152	185142411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381
transcript_74192.nic	chr2	+	2296	13	ISM	ENSMUSG00000035437.16	ENSMUST00000066055.10	4247	19	-26	35500	-26	324	5prime_fragment	FALSE	canonical	3	120	junction_1	43.2925288653314	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCCTGGCTTTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	37342230	37399474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939
transcript_74193.nic	chr2	+	1604	10	ISM	ENSMUSG00000035437.16	ENSMUST00000133434.8	1594	11	-17	3510	-17	-1867	5prime_fragment	FALSE	canonical	3	116	junction_1	50.2610469400128	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTCACCTGGGTGCCGA	1522	False	NA	NA	False	NA	NA	NA	37333273	37382091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921
transcript_74200.known	chr2	+	1594	11	FSM	ENSMUSG00000035437.16	ENSMUST00000133434.8	1594	11	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	48.2323542863087	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGGAGAAAAAGAATAAT	1539	False	NA	NA	False	GATAAA	-3	NA	37333290	37385601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594
transcript_74202.known	chr2	-	3144	18	FSM	ENSMUSG00000026915.17	ENSMUST00000072186.12	3144	18	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_8	55.9640270025228	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTTGTTCTTGTGGCCT	NA	False	NA	-4	True	AATAAA	-14	NA	37593287	37473167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593203
transcript_74204.nic	chr2	-	3288	18	NIC	ENSMUSG00000026915.17	novel	3144	18	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	115	junction_17	145.431799495496	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTTGTTCTTGTGGCCT	NA	False	NA	-4	True	AATAAA	-14	NA	37593906	37473167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593678
transcript_74212.nic	chr2	-	2145	15	ISM	ENSMUSG00000026915.17	ENSMUST00000072186.12	3144	18	-137	13564	-64	-13564	5prime_fragment	FALSE	canonical	3	591	junction_5	38.5497955207791	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATCATTCCTCAGGTTT	NA	False	NA	NA	False	AAGAAA	-3	NA	37593424	37486731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593203
transcript_74216.nic	chr2	-	1736	13	ISM	ENSMUSG00000026915.17	ENSMUST00000072186.12	3144	18	-73	17674	0	-17674	5prime_fragment	FALSE	canonical	3	591	junction_3	38.8124944086595	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGAAAGCAAAAATGATA	NA	False	NA	NA	False	NA	NA	NA	37593360	37490841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593203
transcript_74218.nic	chr2	-	1230	9	ISM	ENSMUSG00000026915.17	ENSMUST00000072186.12	3144	18	-70	41361	3	10411	5prime_fragment	FALSE	canonical	3	610	junction_6	28.7304281207225	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATATTACCCATAGTGC	NA	False	NA	NA	False	NA	NA	NA	37593357	37514528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593203
transcript_74220.known	chr2	-	746	4	FSM	ENSMUSG00000026915.17	ENSMUST00000155237.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	246.78780809072	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGTAAGTACTGTTTAAC	NA	False	NA	NA	False	AATACA	-27	NA	37593871	37530866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_37531029_37535482_37535704_37537127_37537298_37593678
transcript_74221.nic	chr2	-	507	3	ISM	ENSMUSG00000026915.17	ENSMUST00000135488.2	1355	5	-4	10588	-4	1604	5prime_fragment	FALSE	canonical	3	663	junction_1	13	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAACAGAAGTAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	37593364	37535527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_37535704_37537127_37537298_37593203
transcript_74222.nic	chr2	-	343	2	ISM	ENSMUSG00000026915.17	ENSMUST00000135488.2	1355	5	-64	12236	-64	-44	5prime_fragment	FALSE	canonical	3	689	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAAAAGGATCGGAAAA	NA	False	NA	NA	False	CATAAA	-28	NA	37593424	37537175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_37537298_37593203
transcript_74223.nic	chr2	-	350	2	ISM	ENSMUSG00000026915.17	ENSMUST00000155237.2	746	4	-35	6309	-35	-44	5prime_fragment	FALSE	canonical	3	115	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAAAAGGATCGGAAAA	NA	False	NA	NA	False	CATAAA	-28	NA	37593906	37537175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_37537298_37593678
transcript_74230.known	chr2	-	4342	22	FSM	ENSMUSG00000035392.18	ENSMUST00000102787.10	4342	22	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	9.9979589753844	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACCGTTTAAGAAAACAT	NA	False	NA	1	True	AATAAA	-18	NA	38177387	37689002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_37691263_37692026_37692286_37706927_37707017_37734788_37734921_37742407_37742465_37744004_37744077_37746127_37746169_37748029_37748118_37748379_37748485_37826630_37826757_37851652_37851755_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736_37938807_38016540_38016661_38026937_38026988_38049818_38049863_38133413_38133485_38177124
transcript_74232.nic	chr2	-	4349	21	NIC	ENSMUSG00000035392.18	novel	4342	22	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	17.917868176767	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACCGTTTAAGAAAACAT	NA	False	NA	1	True	AATAAA	-18	NA	38177438	37689002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_37691263_37692026_37692286_37706927_37707017_37734788_37734921_37742407_37742465_37744004_37744077_37746127_37746169_37748029_37748118_37748379_37748485_37826630_37826757_37851652_37851755_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736_37938807_38016540_38016661_38026937_38026988_38133413_38133485_38177124
transcript_74241.nnic	chr2	-	4223	20	NIC	ENSMUSG00000035392.18	novel	4342	22	NA	NA	-36	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	18.3463145513678	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACCGTTTAAGAAAACAT	NA	False	NA	1	True	AATAAA	-18	NA	38177438	37689002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_37691263_37692026_37692286_37706927_37707017_37734788_37734921_37742407_37742465_37744004_37744077_37746127_37746169_37748029_37748118_37748379_37748485_37826630_37826757_37851652_37851755_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736_37938807_38049818_38049863_38133413_38133485_38177124
transcript_74250.known	chr2	+	2840	5	FSM	ENSMUSG00000000247.12	ENSMUST00000000253.6	2840	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.73861278752583	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCAGTGCTGGTACTATC	NA	False	NA	15	True	AATAAA	-16	NA	38240770	38259745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_38241906_38243322_38243526_38244460_38244865_38249909_38250116_38258853
transcript_74256.known	chr2	+	10338	10	FSM	ENSMUSG00000026749.12	ENSMUST00000054234.10	10338	10	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	27.0760246548697	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAAATCAAA	NA	False	NA	NA	False	NA	NA	NA	38401654	38484618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_38401806_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
transcript_74262.known	chr2	+	3147	10	FSM	ENSMUSG00000026749.12	ENSMUST00000112902.8	3147	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	93.6646236761514	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACAGTCTCCACTGGAC	NA	False	NA	2	True	AATAAA	-13	NA	38401679	38477492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_38401806_38440564_38440684_38447867_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
transcript_74263.known	chr2	+	1513	10	FSM	ENSMUSG00000026749.12	ENSMUST00000112895.8	1513	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	94.3328752769929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGCTGTGTGCTTCATTT	NA	False	NA	-57	True	NA	NA	NA	38401825	38475778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_38401992_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
transcript_7427.known	chr1	+	5638	20	FSM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	246.149122650716	1065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGAAAATCTTG	NA	False	NA	NA	False	NA	NA	NA	185095240	185142396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687
transcript_74270.known	chr2	-	1160	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	0	0	0	0	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	1633	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2213	False	NA	-18	True	AATAAA	-24	NA	38534099	38478047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
transcript_74278.known	chr2	-	5941	11	FSM	ENSMUSG00000063972.14	ENSMUST00000076275.11	5941	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	17.3677862722916	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCCATCTGTCTGTGAAG	NA	False	NA	-6	True	AATAAA	-16	NA	38816229	38613385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_38617928_38619494_38619648_38621057_38621180_38628898_38629154_38630391_38630620_38632818_38632974_38638847_38638904_38650198_38650442_38762606_38762652_38775207_38775250_38816129
transcript_74282.known	chr2	+	1339	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	449.53704580997	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	8	True	AATAAA	-19	NA	38898087	38905889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
transcript_74284.known	chr2	+	752	4	FSM	ENSMUSG00000026755.15	ENSMUST00000090993.8	752	4	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	241.831897537663	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTGTTTGAAATGGGG	NA	False	NA	NA	False	NA	NA	NA	38898168	38905405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_38898337_38903128_38903200_38903734_38903912_38905069
transcript_74287.known	chr2	-	946	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	0	0	0	0	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895636	38891591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
transcript_74291.known	chr2	-	541	3	FSM	ENSMUSG00000062997.7	ENSMUST00000152441.2	541	3	0	0	0	0	multi-exon	FALSE	canonical	3	39700	junction_1	236.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGATGACAACGACAATAA	NA	False	NA	-48	True	NA	NA	NA	38895055	38891630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_38891778_38894118_38894201_38894743
transcript_74292.known	chr2	-	1165	2	FSM	ENSMUSG00000085755.2	ENSMUST00000141133.2	1165	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTTTTTTCGTGTAC	NA	False	NA	NA	False	NA	NA	NA	38888270	38886724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_38887374_38887754
transcript_74293.known	chr2	-	4869	23	FSM	ENSMUSG00000026754.17	ENSMUST00000039165.15	4869	23	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_22	11.0304799353113	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGGCTAATCTTACCT	NA	False	NA	NA	False	AATAAA	-16	NA	38955553	38906166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955392
transcript_743.nnic	chr1	-	1400	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14707	0	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_9	88.3062851670253	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	2959	False	NA	-2	True	AATAAA	-18	NA	33677112	33492890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33677047
transcript_74306.known	chr2	-	1494	9	FSM	ENSMUSG00000026754.17	ENSMUST00000136261.2	1494	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_8	8.4400459121974	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAGCTCCAGGCGATCA	NA	False	NA	NA	False	NA	NA	NA	38955497	38937083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955436
transcript_74318.known	chr2	-	4115	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATCTCATGCAGTATAC	NA	False	NA	NA	False	AATAAA	-29	NA	39116463	39084365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
transcript_74324.known	chr2	-	1358	5	FSM	ENSMUSG00000026753.6	ENSMUST00000204257.3	1358	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	182.956791347028	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAATTGTACTGATCTTT	NA	False	NA	48	True	TTTAAA	-41	NA	39116294	39086745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39100969_39101066_39116178
transcript_74326.nic	chr2	-	2611	11	NIC	ENSMUSG00000036890.14	novel	2564	11	NA	NA	-64	0	combination_of_known_junctions	TRUE	canonical	3	29	junction_10	9.30644937664198	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCATTTGCGTCTAAGT	NA	False	NA	-6	True	AATAAA	-25	NA	44817340	44454426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44750302_44750339_44817153
transcript_74329.nnic	chr2	-	2517	10	NIC	ENSMUSG00000036890.14	novel	2564	11	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	17.0619785227596	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCATTTGCGTCTAAGT	NA	False	NA	-6	True	AATAAA	-25	NA	44817282	44454426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44817153
transcript_74335.known	chr2	+	713	8	FSM	ENSMUSG00000036792.13	ENSMUST00000147055.8	713	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.1206300291017	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAAGACATGAAAACATC	6846	False	NA	NA	False	NA	NA	NA	48840154	49135569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_48840188_48908265_48908338_48976601_48976665_48989728_48989822_49008663_49008818_49059920_49060026_49121683_49121861_49135553
transcript_74341.known	chr2	-	1477	14	FSM	ENSMUSG00000026761.13	ENSMUST00000154784.8	1477	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	114.388107132055	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGCACTTAGTATGTT	NA	False	NA	NA	False	TATAAA	-12	NA	48839243	48795327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800255_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_74343.nic	chr2	-	1641	14	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	-6	110	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	120.796175338176	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCATGGTCCATAAAATGAT	NA	False	NA	-39	True	AATAAA	-15	NA	48839294	48795217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800258_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_74345.known	chr2	-	4066	14	FSM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	44.7134201423734	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGATGAAGCATTTTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	48839288	48792835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_74353.known	chr2	+	5686	11	FSM	ENSMUSG00000052155.6	ENSMUST00000063886.4	5686	11	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_9	8.77268487978452	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCACATGCAGTTTTTCT	NA	False	NA	15	True	AATAAA	-18	NA	48704120	48793281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_48704839_48760300_48760509_48763068_48763179_48763330_48763486_48780309_48780454_48782140_48782285_48783518_48783665_48784677_48784793_48786983_48787123_48788489_48788621_48789605
transcript_74359.known	chr2	-	1153	7	FSM	ENSMUSG00000026761.13	ENSMUST00000090976.10	1153	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	170.808290847436	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGACAGACTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	48839246	48821969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_48822610_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_74361.known	chr2	-	2133	10	FSM	ENSMUSG00000026761.13	ENSMUST00000141441.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	49.1515670473473	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTTTTTTACTGCAG	NA	False	NA	NA	False	AATAAA	-15	NA	48839246	48801415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_74363.known	chr2	+	4697	14	FSM	ENSMUSG00000069495.13	ENSMUST00000092123.11	4697	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.11943751517944	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGATATATGTGTGTG	NA	False	NA	14	True	AGTAAA	-19	NA	49341497	49441960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_49341971_49378700_49378861_49403226_49403373_49412482_49412690_49418859_49419009_49420022_49420156_49422055_49422248_49425266_49425357_49426587_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
transcript_74368.known	chr2	+	6856	26	FSM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_25	6.95056832208705	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGGTGTCCTTATTT	NA	False	NA	17	True	AATAAA	-18	NA	49509309	49664790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_49509800_49561763_49561855_49570176_49570251_49578664_49578770_49583705_49583755_49584011_49584068_49584779_49584868_49587991_49588117_49590512_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094_49629213_49631344_49631422_49631950_49632061_49634376_49634479_49634697_49634759_49639310_49639383_49642260_49642366_49647350_49647568_49648821_49648935_49661175
transcript_74373.nic	chr2	+	1420	11	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	-21	63992	-21	-19465	5prime_fragment	TRUE	canonical	3	15	junction_6	6.56962708226274	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATGAAAAAGAGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	49509288	49600798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_49509800_49561763_49561855_49570176_49570251_49578664_49578770_49583705_49583755_49584011_49584068_49584779_49584868_49587991_49588117_49590512_49590618_49590968_49591118_49600731
transcript_74376.nic	chr2	+	472	3	ISM	ENSMUSG00000026764.16	ENSMUST00000146247.2	729	7	-229	19465	-229	-19465	5prime_fragment	FALSE	canonical	3	34	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATGAAAAAGAGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	49590361	49600798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_49590618_49590968_49591118_49600731
transcript_74378.known	chr2	+	563	5	FSM	ENSMUSG00000050447.16	ENSMUST00000128451.8	563	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.73205080756888	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAATATCTGTAATCTACC	NA	False	NA	NA	False	NA	NA	NA	49956473	50080682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_49956597_50055480_50055670_50063612_50063712_50078722_50078854_50080661
transcript_74385.nic	chr2	-	1311	8	NIC	ENSMUSG00000026766.17	novel	1351	9	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_6	203.005881085012	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186753	50169892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182911_50186263_50186322_50186654
transcript_74387.known	chr2	-	803	8	FSM	ENSMUSG00000026766.17	ENSMUST00000134480.8	803	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_6	199.415574689068	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTAGGATTCTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	50186699	50170361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182926_50186263_50186322_50186654
transcript_74389.known	chr2	-	1342	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_7	76.2190720146573	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186729	50169892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
transcript_74390.nic	chr2	-	1382	8	NIC	ENSMUSG00000026766.17	novel	1342	8	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	208.37515226541	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186804	50169892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186689
transcript_74392.nic	chr2	-	1680	7	ISM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	-5	0	-5	0	intron_retention	FALSE	canonical	3	533	junction_6	61.03664655125	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186734	50169892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263
transcript_74395.known	chr2	-	2828	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	700	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGGGATGTTTTCTGC	NA	False	NA	-9	True	AATAAA	-16	NA	51039123	51020449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
transcript_74399.known	chr2	-	2057	5	FSM	ENSMUSG00000036249.17	ENSMUST00000102767.8	2057	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2.77263412660235	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGCTGCATCATTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	51825019	51814459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824843
transcript_74400.known	chr2	-	1130	8	FSM	ENSMUSG00000026946.10	ENSMUST00000112705.9	1130	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.91372543633873	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCAGTGTCTTCTTACT	8630	False	NA	NA	False	CATAAA	-13	NA	51863028	51838516	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862920
transcript_74401.known	chr2	-	1162	9	FSM	ENSMUSG00000026946.10	ENSMUST00000145481.8	1162	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.57087047515039	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTCTTCTTACTCTTT	8642	False	NA	NA	False	CATAAA	-17	NA	51863016	51838512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862599_51862640_51862920
transcript_74427.nnic	chr2	+	3710	28	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-65	1650	intron_retention	FALSE	canonical	0	0	junction_15	109.740209496095	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAAGAAGATGCCAAGAT	NA	False	NA	NA	False	NA	NA	NA	51962778	51999387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362
transcript_74441.nnic	chr2	+	3417	25	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-65	0	intron_retention	TRUE	canonical	0	0	junction_15	113.822893310909	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAGTGAAA	NA	False	NA	46	True	AAAAAG	-27	NA	51962778	51997737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649
transcript_74463.known	chr2	+	8509	36	FSM	ENSMUSG00000036202.17	ENSMUST00000112693.10	8509	36	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_16	157.508991644857	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGTTAGTGCCTGCCTT	NA	False	NA	24	True	ATTAAA	-19	NA	51962843	52012395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968321_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
transcript_74464.known	chr2	-	5239	6	FSM	ENSMUSG00000036093.8	ENSMUST00000036541.8	5239	6	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_4	32.5059994462561	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTTGGGGGTTTTTG	4755	False	NA	-3	True	AATAAA	-22	NA	52314913	52287962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_52292445_52294917_52295070_52302073_52302158_52306075_52306224_52306647_52306709_52314601
transcript_74479.known	chr2	-	4717	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGAATTTGAGAGATG	NA	False	NA	NA	False	TATAAA	-12	NA	52632212	52581675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
transcript_74488.nic	chr2	+	1755	14	ISM	ENSMUSG00000036053.18	ENSMUST00000050719.13	3380	27	-120	24480	-112	-24480	5prime_fragment	FALSE	canonical	0	0	junction_1	2.16480727376466	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGTCAAAGAAAAGGAAGAA	5303	False	NA	NA	False	AAGAAA	-3	NA	52747759	52997410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_52748272_52904814_52904899_52926515_52926597_52932304_52932382_52941211_52941296_52944465_52944619_52958513_52958623_52962221_52962299_52963651_52963746_52987282_52987358_52991437_52991549_52993668_52993819_52995490_52995593_52997364
transcript_74489.nic	chr2	+	1807	14	ISM	ENSMUSG00000036053.18	ENSMUST00000050719.13	3380	27	-120	24428	-112	-24428	5prime_fragment	FALSE	canonical	0	0	junction_1	2.16480727376466	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTCACGAACTGGAGAAAC	5303	False	NA	NA	False	AAGAAA	-41	NA	52747759	52997462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_52748272_52904814_52904899_52926515_52926597_52932304_52932382_52941211_52941296_52944465_52944619_52958513_52958623_52962221_52962299_52963651_52963746_52987282_52987358_52991437_52991549_52993668_52993819_52995490_52995593_52997364
transcript_7449.nic	chr1	+	2314	17	ISM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	0	10881	0	-4221	5prime_fragment	FALSE	canonical	3	1945	junction_14	228.315023596784	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGAAATCTCAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	185095240	185131515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418
transcript_74491.known	chr2	-	3565	26	FSM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_25	70.0256410181299	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTGAGTAATAGTTGAAA	NA	False	NA	NA	False	AATATA	-37	NA	53081199	53028486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_74496.nic	chr2	-	2711	25	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-26	2070	-9	-1367	5prime_fragment	FALSE	canonical	3	422	junction_24	68.5136720946184	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCGGGACAGTGAAAAAGA	NA	False	NA	21	True	GATAAA	-10	NA	53081225	53030556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_74497.nic	chr2	-	2705	24	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-105	3181	-8	-2478	5prime_fragment	FALSE	canonical	3	422	junction_23	69.4211279487094	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCATAAGAAGAAAAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	53081304	53031667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_74499.nic	chr2	-	2590	23	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-15	3292	2	-2589	5prime_fragment	FALSE	canonical	3	422	junction_22	66.8456498890609	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCACTTCTCTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	53081214	53031778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_74501.nic	chr2	-	2374	21	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-15	6341	2	502	5prime_fragment	FALSE	canonical	3	422	junction_20	66.9779068051548	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATTTAAAGATTTCATG	NA	False	NA	NA	False	AAGAAA	-3	NA	53081214	53034827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_74510.nic	chr2	-	1414	13	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-67	14575	-4	0	5prime_fragment	FALSE	canonical	3	422	junction_12	58.5355423842833	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGCAAGATCAAAATA	NA	False	NA	9	True	TATAAA	-25	NA	53081266	53043061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_74512.nic	chr2	-	1421	11	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-274	15551	-177	0	5prime_fragment	FALSE	canonical	3	422	junction_10	57.2751254909145	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATATACTTGGAATACAAAG	NA	False	NA	NA	False	AAAAAG	-31	NA	53081473	53044037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_74514.nic	chr2	-	1141	10	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-41	18148	-3	-2597	5prime_fragment	FALSE	canonical	3	422	junction_9	58.8301593939791	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTTTAGTAACTCAGAC	NA	False	NA	NA	False	AAGAAA	-11	NA	53081240	53046634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_74516.known	chr2	-	1425	14	FSM	ENSMUSG00000061136.17	ENSMUST00000125243.3	1425	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	212.889059087803	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGCAAGATCAAAATA	NA	False	NA	9	True	TATAAA	-25	NA	53081184	53043061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53078459_53078553_53079980_53080113_53081034
transcript_74519.known	chr2	+	2548	4	FSM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	0	0	0	0	multi-exon	FALSE	canonical	3	497	junction_2	8.2192186706253	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTGTGTAATGGCAAGG	NA	False	NA	24	True	ATTAAA	-17	NA	53082099	53109232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_53082535_53084295_53084350_53092930_53093064_53107306
transcript_74525.known	chr2	+	5745	17	FSM	ENSMUSG00000026827.13	ENSMUST00000169687.8	5745	17	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	44.6148447828747	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTGTTGGCATTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	57127689	57260731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_57128001_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
transcript_74527.known	chr2	+	5620	17	FSM	ENSMUSG00000026827.13	ENSMUST00000028167.3	5620	17	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_2	27.9815089612766	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTGTTGGCATTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	57128393	57260731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_57128580_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
transcript_7453.nic	chr1	+	2039	15	ISM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	-88	13085	-88	-6425	5prime_fragment	FALSE	canonical	3	1945	junction_14	242.817938012018	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTACAAGAAAACCACCAA	NA	False	NA	26	True	AAAACA	-3	NA	185095152	185129311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256
transcript_74534.known	chr2	-	3293	13	FSM	ENSMUSG00000026836.16	ENSMUST00000090935.9	3293	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	20.684636005177	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATGATTTTCCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	58456838	58336452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676_58369941_58390495_58390570_58397288_58397534_58406035_58406313_58427789_58427886_58456798
transcript_74536.known	chr2	-	3050	12	FSM	ENSMUSG00000026836.16	ENSMUST00000112601.9	3050	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	14.1281034036818	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATGATTTTCCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	58456840	58336452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676_58369941_58390495_58390570_58406035_58406313_58427789_58427886_58456798
transcript_74537.known	chr2	-	2394	11	FSM	ENSMUSG00000026836.16	ENSMUST00000056376.12	2394	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	11.677328461596	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATCAGCAATATCGGCTG	NA	False	NA	NA	False	NA	NA	NA	58457169	58337160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676_58369941_58390495_58390570_58427789_58427886_58456798
transcript_74538.known	chr2	+	4614	22	FSM	ENSMUSG00000026991.21	ENSMUST00000102754.11	4614	22	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	23.3372202787765	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGTTCTTGCAGTTCT	NA	False	NA	21	True	AATAAA	-21	NA	58991193	59185549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
transcript_74539.known	chr2	+	4122	22	FSM	ENSMUSG00000026991.21	ENSMUST00000183359.8	4122	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	25.5631360146304	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAATAAAATGGATGCCC	NA	False	NA	NA	False	AATAAA	-31	NA	58991224	59185168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138428_59138902_59140445_59140635_59142040_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
transcript_74542.known	chr2	+	4484	21	FSM	ENSMUSG00000026991.21	ENSMUST00000168631.8	4484	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	23.7412615503052	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTGTTCTTGCAGTTC	NA	False	NA	20	True	AATAAA	-20	NA	58991193	59185548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59182605_59182680_59184546
transcript_74554.nic	chr2	+	2756	14	ISM	ENSMUSG00000026991.21	ENSMUST00000168631.8	4484	21	-106	16328	-106	0	5prime_fragment	FALSE	canonical	0	0	junction_9	15.9711277960238	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAGAAAAAGAGAACGC	NA	False	NA	NA	False	NA	NA	NA	58991087	59169220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062
transcript_74555.nic	chr2	+	2613	14	NIC	ENSMUSG00000026991.21	novel	2663	15	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	17.2197767133947	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAGAAAAAGAGAACGC	NA	False	NA	NA	False	NA	NA	NA	58991153	59169220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_58991473_59045021_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138428_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062
transcript_7456.nic	chr1	+	1924	14	ISM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	-28	14033	-28	-7373	5prime_fragment	FALSE	canonical	3	2037	junction_4	221.853541965956	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAGTTTTATTTTTCAA	NA	False	NA	NA	False	TATAAA	-34	NA	185095212	185128363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226
transcript_74560.known	chr2	+	2344	13	FSM	ENSMUSG00000026991.21	ENSMUST00000184332.8	2344	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	17.7832239921662	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAGAAAAAGAGAACGC	NA	False	NA	NA	False	NA	NA	NA	58991386	59169220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_58991473_59045021_59045159_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062
transcript_74570.known	chr2	+	7422	27	FSM	ENSMUSG00000035168.17	ENSMUST00000112568.8	7422	27	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_5	18.3464360565297	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGCATTCATTGCT	NA	False	NA	13	True	AATAAA	-15	NA	59442385	59676061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_59442541_59477112_59477217_59529691_59529772_59555004_59555194_59588808_59588914_59601475_59601607_59602696_59602884_59615667_59615932_59621119_59621222_59621942_59622225_59623439_59623592_59626138_59626371_59627929_59628097_59629914_59630523_59636619_59636729_59637910_59638034_59645661_59645899_59647828_59648015_59650550_59650630_59663479_59663614_59664924_59665049_59665735_59665912_59667429_59667563_59669318_59669411_59671282_59671430_59672353_59672455_59673038
transcript_74580.nic	chr2	+	2123	13	ISM	ENSMUSG00000035168.17	ENSMUST00000112568.8	7422	27	-32	48024	-32	-11811	5prime_fragment	FALSE	canonical	3	118	junction_5	19.4186336628851	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCCTAAGTTCCCCACC	NA	False	NA	NA	False	NA	NA	NA	59442353	59628037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_59442541_59477112_59477217_59529691_59529772_59555004_59555194_59588808_59588914_59601475_59601607_59602696_59602884_59615667_59615932_59621119_59621222_59621942_59622225_59623439_59623592_59626138_59626371_59627929
transcript_74581.nic	chr2	+	2103	12	ISM	ENSMUSG00000035168.17	ENSMUST00000112568.8	7422	27	-120	49691	-120	10527	5prime_fragment	TRUE	canonical	3	118	junction_5	20.0107409174702	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCTACCAGAAGCCTTGG	NA	False	NA	NA	False	AAGAAA	-3	NA	59442265	59626370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_59442541_59477112_59477217_59529691_59529772_59555004_59555194_59588808_59588914_59601475_59601607_59602696_59602884_59615667_59615932_59621119_59621222_59621942_59622225_59623439_59623592_59626138
transcript_74586.known	chr2	+	2809	2	FSM	ENSMUSG00000035168.17	ENSMUST00000142573.3	2809	2	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAGAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	ATTAAA	-40	NA	59442418	59479799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_59442541_59477112
transcript_74588.nic	chr2	-	2083	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-20	0	combination_of_known_junctions	TRUE	canonical	3	4	junction_10	21.0570653225942	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712955	59682707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708876_59712744
transcript_74589.known	chr2	-	2072	11	FSM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_10	21.0228447171167	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712928	59682707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
transcript_74590.nic	chr2	-	2037	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_10	14.3488675511345	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712967	59682707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
transcript_74591.nic	chr2	-	2145	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	19.790149064623	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712961	59682707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712744
transcript_74592.nnic	chr2	-	2077	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	18.0765040867973	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712970	59682707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
transcript_74596.nic	chr2	-	1911	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-32	-126	combination_of_known_junctions	FALSE	canonical	3	33	junction_10	14.3488675511345	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAATTATCTTTAAAACAC	NA	False	NA	NA	False	NA	NA	NA	59712967	59682833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
transcript_74616.nnic	chr2	-	2974	16	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39376	-11963	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_12	34.6288255006657	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAATTCTTAATATAATTC	1546	False	NA	0	True	NA	NA	NA	59881038	59767028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
transcript_74620.nnic	chr2	-	2789	15	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39372	-11963	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_12	33.1397781821059	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAATTCTTAATATAATTC	1542	False	NA	0	True	NA	NA	NA	59881042	59767028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
transcript_74623.nnic	chr2	-	2694	15	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39371	-11963	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_11	34.2839285249232	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAATTCTTAATATAATTC	1541	False	NA	0	True	NA	NA	NA	59881043	59767028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
transcript_74624.nnic	chr2	-	2932	15	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39352	10701	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_11	35.8412742348191	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCCGTGCGCTGGGCAG	1522	False	NA	NA	False	TATAAA	-9	NA	59881062	59773104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
transcript_74628.nnic	chr2	-	2519	14	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39357	-11963	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_6	32.3097068968958	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAATTCTTAATATAATTC	1527	False	NA	0	True	NA	NA	NA	59881057	59767028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
transcript_74630.nnic	chr2	-	2878	14	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39217	10701	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_11	34.3655944636527	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCCGTGCGCTGGGCAG	1387	False	NA	NA	False	TATAAA	-9	NA	59881197	59773104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
transcript_74633.nnic	chr2	-	2598	14	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39401	10701	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_10	35.5537762539672	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCCGTGCGCTGGGCAG	1571	False	NA	NA	False	TATAAA	-9	NA	59881013	59773104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
transcript_74636.nnic	chr2	-	2458	13	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39352	10701	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_5	33.5446427251142	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCCGTGCGCTGGGCAG	1522	False	NA	NA	False	TATAAA	-9	NA	59881062	59773104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
transcript_74651.nnic	chr2	-	838	6	NNC	ENSMUSG00000026987.17	novel	740	6	NA	NA	39403	1302	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_2	44.6246568614258	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATCAAAGATAAGGTAAGC	1573	False	NA	NA	False	AAAACA	-31	NA	59881011	59807716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
transcript_74654.known	chr2	-	406	2	FSM	ENSMUSG00000026987.17	ENSMUST00000134908.2	406	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTTTAATTGACTTCTG	9203	False	NA	NA	False	AATAAA	-16	NA	60040092	60036937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_60037308_60040056
transcript_7466.nic	chr1	+	1217	9	ISM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	-88	28368	-88	0	5prime_fragment	FALSE	canonical	3	2037	junction_4	244.058266608611	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAAGGAAGCCAGTT	NA	False	NA	NA	False	NA	NA	NA	185095152	185114028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996
transcript_74664.known	chr2	+	2271	11	FSM	ENSMUSG00000026977.18	ENSMUST00000102747.8	2271	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	141.271405457722	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGATCTGTGAACATGTT	NA	False	NA	NA	False	AAGAAA	-11	NA	60040416	60078317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_60040429_60055113_60055215_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
transcript_74665.known	chr2	+	3594	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAACTTTTTCCTTTTA	NA	False	NA	27	True	AATAAA	-24	NA	60040230	60079555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
transcript_74669.nic	chr2	+	2351	10	NIC	ENSMUSG00000026977.18	novel	2271	11	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	112.133298101901	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGATCTGTGAACATGTT	NA	False	NA	NA	False	AAGAAA	-11	NA	60040200	60078317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064277_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
transcript_74672.nic	chr2	+	2337	9	NIC	ENSMUSG00000026977.18	novel	2271	11	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_8	119.982290359869	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGATCTGTGAACATGTT	NA	False	NA	NA	False	AAGAAA	-11	NA	60040200	60078317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60078233
transcript_74680.known	chr2	+	4972	9	FSM	ENSMUSG00000026977.18	ENSMUST00000143806.2	4972	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	171.87859087158	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACTAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	60040256	60081020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064277_60065342_60067097_60067271_60071286_60071420_60073900_60074015_60078233
transcript_74681.known	chr2	-	1354	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	6.41872261435249	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	3932	False	NA	-4	True	AATAAA	-15	NA	60114832	60082336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
transcript_74684.known	chr2	-	1257	5	FSM	ENSMUSG00000060703.13	ENSMUST00000028356.9	1257	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	33.0189339621981	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	4002	False	NA	-4	True	AATAAA	-15	NA	60114762	60082336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_60082836_60087376_60087548_60088226_60088344_60102445_60102557_60114403
transcript_74685.known	chr2	-	5172	35	FSM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	111.726541471596	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCAAGAGTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	60213575	60124103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_60124283_60129390_60129559_60131298_60131422_60133921_60134072_60136673_60136843_60138482_60138710_60141952_60142148_60144500_60144618_60146432_60146601_60148651_60148818_60152041_60152269_60154162_60154293_60158130_60158292_60158733_60158840_60160319_60160460_60161069_60161153_60161420_60161489_60162662_60162839_60163268_60163305_60164793_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_74691.nic	chr2	-	4614	31	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-63	12571	9	-12571	5prime_fragment	FALSE	canonical	0	0	junction_15	113.570810021277	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGACTTGACTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	60213638	60136674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_60136843_60138482_60138710_60141952_60142148_60144500_60144618_60146432_60146601_60148651_60148818_60152041_60152269_60154162_60154293_60158130_60158292_60158733_60158840_60160319_60160460_60161069_60161153_60161420_60161489_60162662_60162839_60163268_60163305_60164793_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_747.nnic	chr1	-	1191	8	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	219	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	107.409572788139	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	8796	False	NA	-2	True	AATAAA	-18	NA	33661004	33492890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33660914
transcript_74703.nic	chr2	-	1593	9	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-130	59214	-58	-59214	5prime_fragment	FALSE	canonical	3	506	junction_3	46.8386525745564	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAGAAATAACTAAGGATG	NA	False	NA	NA	False	AAGAAA	-24	NA	60213705	60183317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_74704.nic	chr2	-	1376	7	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-130	61609	-58	-61609	5prime_fragment	FALSE	canonical	3	506	junction_1	53.4935094712953	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTTTGTTTGTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	60213705	60185712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_74705.nic	chr2	-	2152	6	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-74	62493	-2	-62493	5prime_fragment	FALSE	canonical	3	533	junction_4	45.5174691739336	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAACAACGAAAGTGCTTT	NA	False	NA	NA	False	GATAAA	-1	NA	60213649	60186596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_74715.nnic	chr2	+	1122	4	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-27869	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	58.0344725141876	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	2017	False	NA	NA	False	NA	NA	NA	60213999	60242923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_60214668_60241980_60242062_60242190_60242353_60242712
transcript_74717.known	chr2	+	566	3	FSM	ENSMUSG00000087283.2	ENSMUST00000131457.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	3	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	9346	False	NA	NA	False	NA	NA	NA	60241868	60242923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_60242062_60242190_60242353_60242712
transcript_74719.known	chr2	-	1806	15	FSM	ENSMUSG00000026970.17	ENSMUST00000112509.2	1806	15	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	64.9034211858871	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGGAAAAAAAATCAAAGATT	NA	False	NA	NA	False	NA	NA	NA	60711814	60583065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60711461
transcript_7472.nic	chr1	+	974	7	ISM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	-88	31316	-88	0	5prime_fragment	FALSE	canonical	3	2037	junction_4	266.097517630077	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGATTTTGAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	185095152	185111080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971
transcript_74720.nic	chr2	-	2117	15	NIC	ENSMUSG00000026970.17	novel	2543	15	NA	NA	-86	76	combination_of_known_junctions	FALSE	canonical	3	25	junction_14	91.0514824095665	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAATTTTCTGGGTATGC	NA	False	NA	NA	False	NA	NA	NA	60793622	60582989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
transcript_74722.nic	chr2	-	2041	15	NIC	ENSMUSG00000026970.17	novel	1806	15	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_14	91.0514824095665	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGGAAAAAAAATCAAAGATT	NA	False	NA	NA	False	NA	NA	NA	60793622	60583065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
transcript_74723.nic	chr2	-	1843	14	NIC	ENSMUSG00000026970.17	novel	2543	15	NA	NA	-9	76	combination_of_known_junctions	FALSE	canonical	3	198	junction_5	40.1883141188577	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAATTTTCTGGGTATGC	NA	False	NA	NA	False	NA	NA	NA	60711823	60582989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60711461
transcript_74724.known	chr2	-	4436	14	FSM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_13	80.5716264093541	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTGTCGGTTTTTTG	NA	False	NA	0	True	AATAAA	-17	NA	60793536	60580536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
transcript_74725.nic	chr2	-	1767	14	NIC	ENSMUSG00000026970.17	novel	1806	15	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	198	junction_5	40.1883141188577	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGGAAAAAAAATCAAAGATT	NA	False	NA	NA	False	NA	NA	NA	60711823	60583065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60711461
transcript_74728.known	chr2	+	2227	9	FSM	ENSMUSG00000064289.16	ENSMUST00000112501.9	2227	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	22.4996527750986	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	False	NA	NA	False	AATAAA	-30	NA	61423440	61484515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_61423553_61424340_61424546_61443994_61444143_61457246_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
transcript_74729.nic	chr2	+	1920	8	NIC	ENSMUSG00000064289.16	novel	2227	9	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	16.9741700527476	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTACGTCGTGCTTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	61423461	61484434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_61423553_61443994_61444143_61457246_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
transcript_74730.known	chr2	+	2039	8	FSM	ENSMUSG00000064289.16	ENSMUST00000112495.8	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.53190132434987	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	False	NA	NA	False	AATAAA	-30	NA	61423420	61484515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
transcript_74733.known	chr2	+	2698	7	FSM	ENSMUSG00000064289.16	ENSMUST00000112494.2	2698	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	10.286182749473	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGCTCTGTGTGGTT	NA	False	NA	NA	False	TATAAA	-14	NA	61423479	61482143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081
transcript_74741.known	chr2	+	1541	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	1410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8547	False	NA	31	True	AATAAA	-17	NA	61542037	61630720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
transcript_74758.known	chr2	+	540	2	FSM	ENSMUSG00000026914.16	ENSMUST00000135265.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	2185	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTCCCTCTGCTCCCCA	8595	False	NA	NA	False	AAAACA	-21	NA	61542085	61551195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_61542218_61550787
transcript_74763.known	chr2	-	5268	26	FSM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_12	33.8302586451833	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCAAAACACAAGCATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	62242575	62160416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
transcript_74776.nic	chr2	-	1642	15	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	53	29229	53	5415	5prime_fragment	FALSE	canonical	3	167	junction_1	31.1576799586902	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAGGAGGAAGAAATCTC	NA	False	NA	NA	False	TATAAA	-5	NA	62242522	62189645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
transcript_74778.nic	chr2	-	1300	9	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	7	44182	7	0	5prime_fragment	FALSE	canonical	3	219	junction_8	22.5596431709369	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCTTTCTCTGATTTCT	NA	False	NA	NA	False	AATGAA	-21	NA	62242568	62204598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
transcript_74781.known	chr2	+	3330	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTCCAATTCCCAGACT	NA	False	NA	NA	False	TTTAAA	-18	NA	62494628	62524453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
transcript_74789.known	chr2	-	1986	14	FSM	ENSMUSG00000026888.15	ENSMUST00000028252.14	1986	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	3.05182068075037	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCGTGTTCTTGTGTGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	64853126	64742819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_64743198_64745059_64745154_64747172_64747261_64747378_64747452_64747542_64747660_64753880_64753962_64760243_64760340_64760529_64760641_64763563_64763702_64766760_64766836_64768712_64768835_64783905_64784063_64851430_64851564_64852803
transcript_74794.known	chr2	+	10672	7	FSM	ENSMUSG00000044647.17	ENSMUST00000122912.8	10672	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	4.6696419087073	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTATTGCGTTTTTATT	5603	False	NA	11	True	AGTAAA	-19	NA	65676110	65861890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_65676229_65690874_65691037_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
transcript_74797.known	chr2	+	4495	6	FSM	ENSMUSG00000044647.17	ENSMUST00000053910.10	4495	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.18747549010185	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAAGAGAATTTTG	5678	False	NA	NA	False	NA	NA	NA	65676185	65855950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_65676229_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
transcript_7480.known	chr1	+	3912	1	FSM	ENSMUSG00000026615.15	ENSMUST00000192588.2	3912	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAAGGGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	185095254	185099166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_185095300_185099200
transcript_74800.known	chr2	+	2566	5	FSM	ENSMUSG00000044647.17	ENSMUST00000145598.9	2566	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.32290411644765	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTATTTTATTTATG	NA	False	NA	13	True	AAAAAG	-12	NA	65762208	65853828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_65762533_65779302_65779474_65832646_65832907_65849783_65850081_65852314
transcript_74806.known	chr2	-	4470	29	FSM	ENSMUSG00000034848.18	ENSMUST00000102718.10	4470	29	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_7	6.12653562590721	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTTTATATTTTTTCAG	NA	False	NA	NA	False	AATAAA	-15	NA	66086961	66014670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_66015188_66016497_66016566_66018603_66018725_66021902_66022128_66028011_66028208_66031466_66031629_66031816_66031968_66037795_66037878_66038997_66039109_66040335_66040525_66047528_66047636_66052997_66053137_66053858_66053970_66054419_66054493_66056249_66056489_66057074_66057297_66059325_66059484_66061632_66061763_66065386_66065588_66065916_66066015_66066564_66066758_66068130_66068230_66069866_66069952_66072974_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
transcript_74808.known	chr2	-	3536	18	FSM	ENSMUSG00000027030.16	ENSMUST00000102715.4	3536	18	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_11	9.06874933675377	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGAGTCTCCTCCATTTCG	NA	False	NA	NA	False	AATAAA	-19	NA	68302612	68040788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417_68196552_68198740_68198843_68199339_68199450_68221257_68221314_68222454_68222597_68228767_68228877_68240372_68240486_68301977
transcript_7481.known	chr1	+	5836	4	FSM	ENSMUSG00000026614.8	ENSMUST00000061093.7	5836	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3.68178700572909	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTCCTGGACTCTGTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	185187044	185200959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_185187877_185188548_185188627_185194883_185195124_185196273
transcript_74813.known	chr2	+	7038	10	FSM	ENSMUSG00000027035.11	ENSMUST00000028426.9	7038	10	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_8	6.54896090146283	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATGAGTGTCCTTTATT	NA	False	NA	5	True	AATAAA	-18	NA	68691784	68944626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785
transcript_7482.known	chr1	+	3506	3	FSM	ENSMUSG00000026614.8	ENSMUST00000238198.2	3506	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTATTGAGAGAAGAAAGT	NA	False	NA	NA	False	AATAAA	-30	NA	185187044	185197957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_185188627_185194883_185195124_185196273
transcript_74821.known	chr2	+	1283	1	FSM	ENSMUSG00000027035.11	ENSMUST00000183755.2	1283	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAAAAATCGCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	68691785	68693068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_68691800_68693100
transcript_74824.known	chr2	-	1527	7	FSM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	307.891214554751	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036479	69024238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036173
transcript_74825.known	chr2	-	1352	7	FSM	ENSMUSG00000005233.17	ENSMUST00000005365.15	1352	7	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_6	34.6121365997536	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036538	69024238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
transcript_74826.nic	chr2	-	421	4	ISM	ENSMUSG00000005233.17	ENSMUST00000126638.8	1869	5	-104	4034	-33	-2758	5prime_fragment	FALSE	canonical	3	811	junction_3	36.8088153692684	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATGTGTTGAAGATGAT	NA	False	NA	NA	False	AAGAAA	-6	NA	69036571	69033024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_69033063_69035199_69035266_69035369_69035523_69036407
transcript_74828.nic	chr2	-	343	3	ISM	ENSMUSG00000005233.17	ENSMUST00000126638.8	1869	5	-104	6249	-33	742	5prime_fragment	FALSE	canonical	3	811	junction_2	41.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAGGATGACTGAGAT	NA	False	NA	NA	False	ATTAAA	-5	NA	69036571	69035239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_69035266_69035369_69035523_69036407
transcript_74829.known	chr2	-	4359	25	FSM	ENSMUSG00000027070.15	ENSMUST00000100051.9	4359	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.25761568939888	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTCTCATTAATATCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	69416373	69336547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_69337101_69338108_69338226_69338311_69338432_69339476_69339723_69340686_69340969_69341273_69341412_69343590_69343722_69344480_69344607_69346734_69346928_69348652_69348857_69350257_69350399_69352062_69352266_69353489_69353697_69354264_69354489_69355504_69355675_69357859_69357989_69363796_69363917_69365252_69365403_69366328_69366446_69367858_69367973_69368294_69368406_69379283_69379401_69381173_69381297_69382696_69382805_69416158
transcript_74830.known	chr2	+	1468	12	FSM	ENSMUSG00000063145.11	ENSMUST00000074963.9	1468	12	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	9.81144550053239	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGTTTTGAAAGTATTA	NA	False	NA	6	True	AATAAA	-20	NA	69477551	69497915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69484589_69484718_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
transcript_74831.known	chr2	+	1124	11	FSM	ENSMUSG00000063145.11	ENSMUST00000134659.8	1124	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	27.5109069279804	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAGGCTTGGGATATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	69477514	69497662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
transcript_74833.known	chr2	+	425	4	FSM	ENSMUSG00000063145.11	ENSMUST00000144240.8	425	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	7.84573486395988	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCGAGGCCAAACCGAAGC	NA	False	NA	NA	False	AATAAA	-17	NA	69477596	69484592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406
transcript_74835.nnic	chr2	-	2572	15	NNC	ENSMUSG00000027086.17	novel	2865	14	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	75.3197605315538	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTATGGCCCACCATATA	7061	False	NA	NA	False	NA	NA	NA	69543854	69517158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470_69542540_69543736
transcript_74838.known	chr2	-	2865	14	FSM	ENSMUSG00000027086.17	ENSMUST00000073152.13	2865	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	59.5439273976854	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTATGGCCCACCATATA	7965	False	NA	NA	False	NA	NA	NA	69542950	69517158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
transcript_7484.known	chr1	-	2761	3	FSM	ENSMUSG00000097615.2	ENSMUST00000180623.2	2761	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTCTCAGTCTTTGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	185187765	185179312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_185181412_185186201_185186331_185187232
transcript_74841.known	chr2	-	2511	14	FSM	ENSMUSG00000027086.17	ENSMUST00000102706.4	2511	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	76.1245475885547	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGGCTCATAACCATCTAT	8110	False	NA	NA	False	NA	NA	NA	69542805	69517280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532793_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
transcript_74849.known	chr2	+	6127	14	FSM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	41.7748260879032	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGATTGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	69553148	69584356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
transcript_74853.known	chr2	+	6245	14	FSM	ENSMUSG00000042133.17	ENSMUST00000040915.15	6245	14	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	98.4826299525295	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGATTGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	69553436	69584356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69553708_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
transcript_74855.nic	chr2	+	1402	13	ISM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	-16	4915	-16	-451	5prime_fragment	FALSE	canonical	3	282	junction_1	38.5878327110157	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGATTTGTTATTTAAAT	NA	False	NA	NA	False	NA	NA	NA	69553132	69579441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304
transcript_7486.nnic	chr1	-	2477	6	NNC	ENSMUSG00000039246.9	novel	1578	5	NA	NA	-29	-152	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	61.9593415071529	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTACTGACTTTCAGAT	NA	False	NA	-14	True	AATAAA	-12	NA	185849536	185820079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_185820966_185821640_185821757_185832389_185832560_185833859_185834882_185846460_185846561_185849353
transcript_74864.nic	chr2	+	1150	11	ISM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	-16	10259	-16	2140	5prime_fragment	FALSE	canonical	3	282	junction_1	41.5528579041201	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAGAGAGAGAAAGAGAAA	NA	False	NA	44	True	AAAAAG	-34	NA	69553132	69574097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956
transcript_74865.nic	chr2	+	1003	11	NIC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	133.943420891061	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAGGAAAAAGAAACA	NA	False	NA	NA	False	AAGAAA	-6	NA	69553148	69571957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_69553302_69561834_69561925_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829
transcript_74868.nic	chr2	+	929	10	ISM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	-16	12399	-16	0	5prime_fragment	TRUE	canonical	3	282	junction_1	43.7977957616619	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAGGAAAAAGAAACA	NA	False	NA	NA	False	AAGAAA	-6	NA	69553132	69571957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829
transcript_74871.nic	chr2	+	1091	10	ISM	ENSMUSG00000042133.17	ENSMUST00000040915.15	6245	14	-60	12399	-60	0	5prime_fragment	FALSE	canonical	3	35	junction_1	114.123173656502	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAGGAAAAAGAAACA	NA	False	NA	NA	False	AAGAAA	-6	NA	69553376	69571957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_69553708_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829
transcript_74872.nic	chr2	+	791	9	ISM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	35	17843	-14	0	5prime_fragment	FALSE	canonical	3	282	junction_1	44.1609273000466	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAGAGATTATAAATAAGC	NA	False	NA	50	True	NA	NA	NA	69553183	69566513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332
transcript_74879.known	chr2	+	598	6	FSM	ENSMUSG00000042133.17	ENSMUST00000124810.8	598	6	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	52.1904205769603	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATATTGTTTCAAATTTC	NA	False	NA	NA	False	AATATA	-44	NA	69553197	69563697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532
transcript_74880.known	chr2	+	2260	4	FSM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	4.49691252107735	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	26	True	AATAAA	-16	NA	69619979	69627567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69620301_69620629_69620666_69622680_69622836_69625819
transcript_74881.known	chr2	+	667	4	FSM	ENSMUSG00000027088.11	ENSMUST00000151298.8	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	45.0653845971483	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAATATTTGAGAGATG	NA	False	NA	NA	False	GGGGCT	-25	NA	69619966	69625997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69620301_69620629_69620666_69622716_69622836_69625819
transcript_74883.known	chr2	+	2194	4	FSM	ENSMUSG00000027088.11	ENSMUST00000112266.8	2194	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	37.7918274528002	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	26	True	AATAAA	-16	NA	69619993	69627567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69620249_69620629_69620666_69622680_69622836_69625819
transcript_7489.known	chr1	-	1578	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAGTGTATAATAATA	NA	False	NA	NA	False	AATAAA	-26	NA	185849507	185819927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
transcript_74890.known	chr2	+	2001	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	0	0	0	0	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGCCAAACATT	NA	False	NA	-38	True	NA	NA	NA	69691905	69702130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
transcript_74894.known	chr2	+	2088	12	FSM	ENSMUSG00000068882.14	ENSMUST00000166411.8	2088	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	503.342431457735	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTCACTTTGGACATA	NA	False	NA	22	True	ATTAAA	-23	NA	69691905	69702190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
transcript_74901.nic	chr2	+	1130	10	ISM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	-20	1276	-20	-1000	5prime_fragment	FALSE	canonical	3	1543	junction_7	92.3501121270383	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCATTGAAAAAAATCAC	NA	False	NA	NA	False	AAAAAG	-37	NA	69691885	69700854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728
transcript_74906.known	chr2	-	968	7	FSM	ENSMUSG00000051730.16	ENSMUST00000060447.13	968	7	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_3	75.5058864519111	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATTTTCTCTTTTCTT	6806	False	NA	-5	True	AATAAA	-34	NA	69715959	69701541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711293_69711640_69711756_69715592
transcript_74908.nic	chr2	+	751	6	ISM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	-20	4234	-20	0	5prime_fragment	FALSE	canonical	3	1600	junction_1	84.8608272408418	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTTCTTAGGTTT	NA	False	NA	NA	False	NA	NA	NA	69691885	69697896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795
transcript_74909.known	chr2	+	634	6	FSM	ENSMUSG00000068882.14	ENSMUST00000112260.3	634	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	695.864527045315	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTTCTTAGGTTT	NA	False	NA	NA	False	NA	NA	NA	69692029	69697896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795
transcript_74911.known	chr2	-	851	6	FSM	ENSMUSG00000051730.16	ENSMUST00000142127.8	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	209.013492387453	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACTTGTCTCTAGCAC	6824	False	NA	-21	True	AATAAA	-18	NA	69715941	69701557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69711110_69711293_69711640_69711756_69715592
transcript_74916.known	chr2	-	2090	4	FSM	ENSMUSG00000051730.16	ENSMUST00000135487.2	2090	4	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_1	42.2926313518876	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCAAAAAGAAAAAGAAAGT	6817	False	NA	NA	False	NA	NA	NA	69715948	69708091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_69709529_69711110_69711293_69711640_69711756_69715592
transcript_7492.known	chr1	-	584	4	FSM	ENSMUSG00000039246.9	ENSMUST00000195481.2	584	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	56.8174464598878	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATTCCTGACCAGCATAT	NA	False	NA	NA	False	NA	NA	NA	185849485	185820729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_185820966_185821640_185821757_185846460_185846561_185849353
transcript_74923.known	chr2	+	8072	39	FSM	ENSMUSG00000044308.18	ENSMUST00000055758.16	8072	39	0	0	0	0	multi-exon	TRUE	non_canonical	3	59	junction_28	22.5386863475108	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGAATGTTTATGTTTTC	4326	False	NA	23	True	AATAAA	-37	NA	69727589	69854357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_69728184_69744757_69744898_69747420_69747580_69752588_69752733_69753227_69753278_69764732_69764800_69766235_69766367_69768427_69768657_69774643_69774824_69775357_69775492_69778767_69778855_69781686_69781753_69781843_69781934_69783084_69783214_69783831_69783885_69783986_69784121_69784619_69784706_69786308_69786451_69789910_69790008_69795717_69795860_69800480_69800586_69801403_69801578_69803492_69803954_69808062_69808152_69809662_69809813_69813471_69813606_69819129_69819241_69821768_69821970_69824019_69824157_69830801_69830888_69833697_69833804_69839446_69839551_69843433_69843559_69846475_69846584_69846683_69846810_69848736_69848917_69850794_69851005_69851455_69851596_69851886
transcript_74925.known	chr2	+	2100	2	FSM	ENSMUSG00000075304.3	ENSMUST00000100043.3	2100	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCCTCTGATCTTT	NA	False	NA	23	True	AATAAA	-40	NA	70305266	70308073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_70305661_70306367
transcript_74928.known	chr2	+	3355	17	FSM	ENSMUSG00000070880.11	ENSMUST00000094934.11	3355	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	3.61420807370024	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGTACCCATTTTTTT	NA	False	NA	6	True	AATAAA	-22	NA	70392385	70432358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_70392677_70394111_70394255_70397529_70397593_70403049_70403209_70404412_70404656_70409454_70409546_70416177_70416291_70417466_70417583_70417666_70417747_70417977_70418033_70420116_70420234_70421449_70421515_70423775_70423855_70424967_70425118_70427505_70427614_70429952_70430043_70430966
transcript_7493.known	chr1	-	1321	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTTATCTTTTCTATT	NA	False	NA	-30	True	CATAAA	-6	NA	186481555	186453174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
transcript_74931.known	chr2	-	608	2	FSM	ENSMUSG00000086515.2	ENSMUST00000150702.2	608	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAGAAAAGATTAACGAG	NA	False	NA	NA	False	NA	NA	NA	70339543	70333776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_70334300_70339458
transcript_74937.known	chr2	+	2238	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_9	56.2121203045731	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCGTGTACTTCATGTGT	NA	False	NA	38	True	AATAAA	-38	NA	70491919	70522087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
transcript_74939.known	chr2	+	1196	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	0	0	0	0	multi-exon	FALSE	canonical	3	630	junction_6	27.9463772249642	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGGCCTCCCGTTCAGTC	NA	False	NA	9	True	AATAAA	-18	NA	70491933	70519704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
transcript_74948.nnic	chr2	+	2034	15	NNC	ENSMUSG00000041966.19	novel	1905	15	NA	NA	-23	-1464	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_14	52.7831528471898	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTCCATGGTTGTCCAC	NA	False	NA	NA	False	NA	NA	NA	70886064	70924738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70924541
transcript_7495.known	chr1	-	3092	4	FSM	ENSMUSG00000001305.6	ENSMUST00000162336.2	3092	4	0	0	0	0	multi-exon	FALSE	canonical	3	1054	junction_3	20.6774165590278	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAATCTCTGCTTCCCTG	NA	False	NA	-16	True	ATTAAA	-12	NA	186481522	186453288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186472061_186481360
transcript_74950.known	chr2	+	1905	15	FSM	ENSMUSG00000041966.19	ENSMUST00000064141.12	1905	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_14	54.6553207074357	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGCTTTATGACTATCC	NA	False	NA	12	True	AATAAA	-21	NA	70886124	70929486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70929358
transcript_74954.known	chr2	+	7739	14	FSM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_11	23.2697075602773	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTGTGTATACATATGT	NA	False	NA	5	True	NA	NA	NA	70886087	70926202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
transcript_74960.nic	chr2	+	2306	14	NIC	ENSMUSG00000041966.19	novel	7739	14	NA	NA	-16	334	combination_of_known_junctions	TRUE	canonical	3	27	junction_1	53.8095479968128	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATCAATTCTAGTTTTTC	NA	False	NA	5	True	NA	NA	NA	70886071	70920956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_70886261_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
transcript_74969.nic	chr2	+	1417	10	ISM	ENSMUSG00000041966.19	ENSMUST00000102701.5	1703	13	-131	4057	-23	1129	5prime_fragment	FALSE	canonical	3	195	junction_1	18.2357673234921	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGACATTGTTGTTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	70886064	70914931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768
transcript_74973.nic	chr2	-	2137	10	NIC	ENSMUSG00000041975.18	novel	2347	10	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	29.4505234814822	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885945	70794904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812312_70823827_70823920_70848563_70848719_70885714
transcript_74974.known	chr2	-	2347	10	FSM	ENSMUSG00000041975.18	ENSMUST00000112186.9	2347	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	14.8332292963476	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885927	70794904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812540_70823827_70823920_70848563_70848719_70885714
transcript_74976.nic	chr2	+	1209	9	ISM	ENSMUSG00000041966.19	ENSMUST00000102701.5	1703	13	-131	6636	-23	-45	5prime_fragment	FALSE	canonical	3	195	junction_1	19.2467529729043	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAAGGAGTTTTTCATAT	NA	False	NA	NA	False	AAGAAA	-1	NA	70886064	70912352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254
transcript_74983.known	chr2	+	5339	4	FSM	ENSMUSG00000027015.5	ENSMUST00000028403.3	5339	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTTTCTGTGTG	NA	False	NA	NA	False	AATAAA	-14	NA	70948266	70973270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_70948657_70959996_70960206_70967832_70967988_70968685
transcript_74984.known	chr2	+	2548	18	FSM	ENSMUSG00000027012.16	ENSMUST00000112136.2	2548	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	255.153119100769	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042335	71093647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058170_71058189_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092994
transcript_74987.known	chr2	+	2466	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112138.8	2466	16	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	83.3153580613376	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCTCAAATTTTCACT	NA	False	NA	12	True	AATAAA	-14	NA	71042101	71093635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
transcript_74988.known	chr2	+	2631	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042177	71093647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
transcript_74997.nic	chr2	+	309	2	ISM	ENSMUSG00000027012.16	ENSMUST00000141619.8	679	8	-156	32468	-56	-15990	5prime_fragment	FALSE	canonical	3	270	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTATGTTTGATTCACT	NA	False	NA	34	True	NA	NA	NA	71041993	71044895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_71042190_71044782
transcript_74998.nic	chr2	+	405	2	ISM	ENSMUSG00000027012.16	ENSMUST00000149735.2	2248	4	-221	15990	-23	-15990	5prime_fragment	FALSE	canonical	3	502	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTATGTTTGATTCACT	NA	False	NA	34	True	NA	NA	NA	71042126	71044895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_71042419_71044782
transcript_74999.known	chr2	+	2248	4	FSM	ENSMUSG00000027012.16	ENSMUST00000149735.2	2248	4	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	41.2660743091573	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATGAAAATAAAAATAAAAGG	NA	False	NA	NA	False	NA	NA	NA	71042347	71060885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943
transcript_75.known	SIRV2	-	2051	11	FSM	SIRV2A	SIRV201	2051	11	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCCAACGTGGCATGCG	NA	False	NA	NA	False	NA	NA	NA	5907	1000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
transcript_7501.known	chr1	+	3212	1	FSM	ENSMUSG00000039224.2	ENSMUST00000045108.2	3212	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAGAAATGGTCTATAT	NA	False	NA	NA	False	NA	NA	NA	186699612	186702824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_186699600_186702800
transcript_75013.nnic	chr2	-	2676	19	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5295	-53	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	45.2950887153165	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71164479	71105086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71159421_71159467_71160179_71160375_71163948_71164065_71164384
transcript_7502.known	chr1	+	4547	10	FSM	ENSMUSG00000039210.17	ENSMUST00000065573.14	4547	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_8	10.9341463112378	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	186947707	187083624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_187036526_187036595_187048720_187048761_187054480_187054552_187073683_187073773_187080553
transcript_75031.nnic	chr2	-	2436	17	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5295	-53	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_15	34.4382940017359	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71164479	71105086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71163948_71164065_71164384
transcript_75032.nnic	chr2	-	2392	17	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5302	-53	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_15	37.8665419598886	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71164486	71105086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71163948_71164065_71164435
transcript_75037.nnic	chr2	-	2803	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5295	418	at_least_one_novel_splicesite	TRUE	canonical	3	57	junction_15	22.4311291636323	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCATGGAGTTGGTTTCC	NA	False	NA	-5	True	AATAAA	-15	NA	71164479	71104615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164384
transcript_75040.nnic	chr2	-	2332	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5295	-53	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_15	22.4311291636323	68	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71164479	71105086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164384
transcript_75041.nnic	chr2	-	2288	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5302	-53	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_15	28.2830141408035	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71164486	71105086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164435
transcript_75042.nnic	chr2	-	2574	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	5538	-53	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_15	30.983436435188	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71168838	71105086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71168501
transcript_75045.known	chr2	+	1576	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	0	0	0	0	multi-exon	FALSE	canonical	3	1873	junction_8	150.054156890104	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACTTTGCATTTGAGTT	5118	False	NA	59	True	GATAAA	-16	NA	71219603	71271966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
transcript_75049.known	chr2	+	1321	10	FSM	ENSMUSG00000041921.17	ENSMUST00000037210.9	1321	10	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_6	11.0565326201412	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTATTGTGTCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	71283619	71355535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
transcript_75054.known	chr2	-	2473	3	FSM	ENSMUSG00000023391.9	ENSMUST00000024159.8	2473	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGCTTTTTCCTTGGT	NA	False	NA	NA	False	AATAAA	-18	NA	71377098	71373751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_71375269_71375727_71375913_71376327
transcript_75055.nnic	chr2	+	744	4	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	-71	-2	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_1	9.8770215933527	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTATCAAGACTCGGTTG	NA	False	NA	3	True	ATTAAA	-16	NA	71549689	71561308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_71549853_71553630_71553841_71560693_71560778_71561021
transcript_75062.known	chr2	+	4156	26	FSM	ENSMUSG00000027111.17	ENSMUST00000112101.8	4156	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	107.199447759772	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTTTATAAACATGCAAG	NA	False	NA	NA	False	NA	NA	NA	71617283	71687115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_71617353_71617427_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126_71676226_71676316_71676428_71676507_71676607_71679724_71679851_71686197
transcript_75066.nic	chr2	+	4310	25	NIC	ENSMUSG00000027111.17	novel	4156	26	NA	NA	-68	0	intron_retention	FALSE	canonical	3	444	junction_20	38.1094686032516	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTTTATAAACATGCAAG	NA	False	NA	NA	False	NA	NA	NA	71617204	71687115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126_71676226_71676316_71676428_71676507_71676607_71679724_71679851_71686197
transcript_75067.nic	chr2	+	5762	25	NIC	ENSMUSG00000027111.17	novel	4310	26	NA	NA	-68	-193	intron_retention	FALSE	canonical	3	444	junction_20	38.1094686032516	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTCATCGCTTGTTAACA	NA	False	NA	25	True	AATAAA	-13	NA	71617204	71688567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126_71676226_71676316_71676428_71676507_71676607_71679724_71679851_71686197
transcript_75068.nic	chr2	+	5881	25	NIC	ENSMUSG00000027111.17	novel	4310	26	NA	NA	-68	-74	intron_retention	FALSE	canonical	3	444	junction_20	38.1094686032516	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAGTGTCCCATATAATT	NA	False	NA	25	True	AGTAAA	-14	NA	71617204	71688686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126_71676226_71676316_71676428_71676507_71676607_71679724_71679851_71686197
transcript_75076.nic	chr2	+	2981	21	ISM	ENSMUSG00000027111.17	ENSMUST00000028522.10	4310	26	-117	10952	-68	-6829	5prime_fragment	FALSE	canonical	3	444	junction_20	36.6672878735256	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGGAACTTCCTGAAAAACA	NA	False	NA	NA	False	AAGAAA	-5	NA	71617204	71676150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126
transcript_75083.nic	chr2	+	1867	12	ISM	ENSMUSG00000027111.17	ENSMUST00000028522.10	4310	26	-117	18451	-68	-607	5prime_fragment	FALSE	canonical	3	445	junction_11	34.6517503403925	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGGGTTGTCATCGAGAG	NA	False	NA	NA	False	AAAAAG	-11	NA	71617204	71668651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611
transcript_75085.nic	chr2	+	1827	11	ISM	ENSMUSG00000027111.17	ENSMUST00000028522.10	4310	26	-117	22688	-68	-4844	5prime_fragment	FALSE	canonical	3	453	junction_8	31.9413525073689	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTGCCCAGTACATTAA	NA	False	NA	NA	False	AATATA	-34	NA	71617204	71664414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352
transcript_75087.known	chr2	+	1542	4	FSM	ENSMUSG00000027111.17	ENSMUST00000152009.2	1542	4	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_3	18.1842422626478	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	AATAAA	-14	NA	71617272	71651287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342
transcript_75092.known	chr2	+	5185	11	FSM	ENSMUSG00000006494.12	ENSMUST00000006669.6	5185	11	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_8	20.4606940253746	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTCATATTTCTGTAGCA	NA	False	NA	21	True	ATTAAA	-31	NA	71703567	71734202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_71703910_71705749_71705892_71710382_71710455_71713766_71713952_71714186_71714277_71716325_71716404_71717725_71717803_71719239_71719339_71726032_71726144_71727990_71728105_71730327
transcript_75096.nic	chr2	+	1888	9	ISM	ENSMUSG00000006494.12	ENSMUST00000006669.6	5185	11	-23	7390	-23	-25	5prime_fragment	FALSE	canonical	3	206	junction_8	16.3477827242718	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATTTTTTTTTAATATAT	NA	False	NA	NA	False	ATTAAA	-16	NA	71703544	71726812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_71703910_71705749_71705892_71710382_71710455_71713766_71713952_71714186_71714277_71716325_71716404_71717725_71717803_71719239_71719339_71726032
transcript_7510.known	chr1	+	4702	8	FSM	ENSMUSG00000039210.17	ENSMUST00000110943.9	4702	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	24.9038969166003	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGTTGTTGGTGTGTTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	186947718	187083901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_187036526_187036595_187073683_187073773_187080553
transcript_75103.known	chr2	+	3334	20	FSM	ENSMUSG00000004085.15	ENSMUST00000090824.12	3334	20	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_12	12.7949955590981	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATTGTATGGTGGCTA	3234	False	NA	NA	False	AATAAA	-22	NA	72115980	72272954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72240492_72240538_72242273_72242305_72242414_72242555_72246884_72246948_72248298_72248392_72263711_72263829_72265574_72265650_72268545_72268697_72271575
transcript_75105.known	chr2	+	6663	12	FSM	ENSMUSG00000004085.15	ENSMUST00000135469.8	6663	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_11	6.87671841784634	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTTGTTATGTGTCGCT	3325	False	NA	NA	False	AATAAA	-16	NA	72116071	72237846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72232332
transcript_75119.known	chr2	+	2424	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	2096	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTTATTTTTGTTT	8569	False	NA	NA	False	AATAAA	-16	NA	72306502	72317237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
transcript_75140.known	chr2	-	4181	7	FSM	ENSMUSG00000027109.17	ENSMUST00000102689.10	4181	7	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	141.426561233109	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTGAAAAAGTCTAATTT	2885	False	NA	-12	True	ATTAAA	-25	NA	72810790	72766770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809241_72809374_72809830_72809977_72810593
transcript_7515.known	chr1	+	1639	6	FSM	ENSMUSG00000039210.17	ENSMUST00000044812.12	1639	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	31.740195336513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTATGGTTTATTTTAA	NA	False	NA	NA	False	AAGAAA	-11	NA	186947740	186966614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_186966150
transcript_75154.known	chr2	-	3808	6	FSM	ENSMUSG00000027109.17	ENSMUST00000066003.7	3808	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	184.227685215876	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTGTTGTAGTCCGATG	2905	False	NA	-2	True	AATAAA	-22	NA	72810770	72766991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809830_72809977_72810593
transcript_7516.known	chr1	+	2411	6	FSM	ENSMUSG00000039210.17	ENSMUST00000097443.10	2411	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_5	28.9924128005932	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTTCAATTCTCTG	NA	False	NA	NA	False	AATAAA	-43	NA	186947704	186968028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_186966828
transcript_75172.nic	chr2	-	2027	5	ISM	ENSMUSG00000027109.17	ENSMUST00000102689.10	4181	7	-51	10171	-51	-202	5prime_fragment	FALSE	canonical	3	107	junction_4	129.825604177296	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCGGAGGGTAGCTTGC	2834	False	NA	6	True	NA	NA	NA	72810841	72776941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_72777083_72800498_72801859_72809241_72809374_72809830_72809977_72810593
transcript_75176.known	chr2	+	364	3	FSM	ENSMUSG00000063714.16	ENSMUST00000146195.2	364	3	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	38	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAGGTTCTTGGAAAATA	NA	False	NA	-41	True	AATGAA	-9	NA	72809859	72818890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_72809940_72817871_72817977_72818711
transcript_75179.known	chr2	-	3870	5	FSM	ENSMUSG00000027109.17	ENSMUST00000133615.2	3870	5	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_4	47.8924576525365	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAGTTTGTTGTAGTCC	4045	False	NA	-6	True	AATAAA	-18	NA	72809630	72766995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809241
transcript_75182.known	chr2	-	2175	11	FSM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_4	35.4120036145937	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCGTTTCTAAGGGGT	NA	False	NA	-13	True	ATTAAA	-14	NA	73044791	72923144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
transcript_75187.known	chr2	-	905	8	FSM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	132.211333609089	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGTGTTTTGTTCAATG	NA	False	NA	-1	True	AATAAA	-19	NA	73044677	72967870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_72968000_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
transcript_75188.nic	chr2	-	922	7	ISM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	-148	4373	-34	-4373	5prime_fragment	FALSE	canonical	3	405	junction_5	21.5464614264152	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTAAGTGTTTTTTCCCTG	NA	False	NA	NA	False	AAAAAG	-24	NA	73044825	72972243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
transcript_75191.known	chr2	-	1300	4	FSM	ENSMUSG00000027108.16	ENSMUST00000136684.2	1300	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	2.62466929133727	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	73044756	73028944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73029873_73033668_73033813_73043203_73043305_73044629
transcript_75193.known	chr2	-	2821	10	FSM	ENSMUSG00000041777.13	ENSMUST00000058615.10	2821	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	34.2478259200042	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTGCCTATTGTGAAT	NA	False	NA	NA	False	AATAAA	-26	NA	73143045	73113448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73136771_73136783_73137198_73137273_73140800_73140896_73142760
transcript_75196.known	chr2	+	3309	8	FSM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	26.8791702981764	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTGATCTTTGATAAA	NA	False	NA	NA	False	AATAAA	-30	NA	73142944	73168162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
transcript_7520.nnic	chr1	-	3714	19	NNC	ENSMUSG00000026608.14	novel	3706	18	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.1927713446378	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTGTCTTCAGTTATT	NA	False	NA	-2	True	ATTAAA	-20	NA	188740106	188703291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_188703463_188703523_188704881_188706262_188706402_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596_188728738_188729158_188729240_188729473_188729533_188732449_188732524_188733539_188733586_188734101_188734156_188739726
transcript_75209.known	chr2	+	1897	4	FSM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	8.65383665716478	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGATTACTTTGGTTGTA	NA	False	NA	NA	False	AATAAA	-36	NA	73142997	73151140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646
transcript_75214.known	chr2	-	4728	8	FSM	ENSMUSG00000075284.11	ENSMUST00000094681.11	4728	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	8.44671171376828	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGTGGCTTTCTTGTCT	NA	False	NA	0	True	AATAAA	-21	NA	73360078	73259953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73262810_73264373_73264488_73265289_73265503_73267297_73268036_73270320_73270501_73274788_73274919_73278192_73278282_73359670
transcript_75217.known	chr2	-	4386	9	FSM	ENSMUSG00000027107.4	ENSMUST00000028515.4	4386	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGGGTGTGTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	73410682	73393558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73396652_73397045_73397286_73398435_73398660_73400750_73400989_73401756_73401953_73403603_73403714_73404664_73404710_73404829_73404976_73410588
transcript_75221.known	chr2	-	4050	13	FSM	ENSMUSG00000056486.19	ENSMUST00000112024.10	4050	13	0	0	0	0	multi-exon	FALSE	canonical	1	103	junction_1	53.6273147648555	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTTGAGCTGCCTACTG	NA	False	NA	44	True	NA	NA	NA	73605690	73441003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73490023_73490102_73509958_73510248_73537262_73537377_73540798_73540831_73546707_73546764_73551746_73551786_73605366
transcript_75236.known	chr2	-	2396	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112017.8	2396	14	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_5	32.1212569481487	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTGGAATCTTGAGCA	NA	False	NA	NA	False	AGTAAA	-4	NA	73722899	73648609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_75238.known	chr2	-	4195	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112007.8	4195	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	109.668839867438	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722975	73646852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
transcript_7524.known	chr1	-	3706	18	FSM	ENSMUSG00000026608.14	ENSMUST00000085678.8	3706	18	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_13	20.9446461104513	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTGTCTTCAGTTATT	NA	False	NA	-2	True	ATTAAA	-20	NA	188740037	188703291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_188704881_188706262_188706402_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596_188728738_188729158_188729240_188729473_188729533_188732449_188732524_188733539_188733586_188734101_188734156_188739726
transcript_75251.known	chr2	-	4037	13	FSM	ENSMUSG00000027104.19	ENSMUST00000112010.9	4037	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_9	68.6093510795398	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722880	73646852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_75259.known	chr2	-	3943	12	FSM	ENSMUSG00000027104.19	ENSMUST00000112016.9	3943	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_5	77.3989343681314	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722983	73646852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_75260.known	chr2	-	4016	12	FSM	ENSMUSG00000027104.19	ENSMUST00000090802.11	4016	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_11	103.634928219724	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722956	73646852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73722818
transcript_75270.nic	chr2	-	494	5	ISM	ENSMUSG00000027104.19	ENSMUST00000112017.8	2396	14	-73	35529	0	-8061	5prime_fragment	FALSE	canonical	3	284	junction_1	17.5837282736057	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGTATATGCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	73722972	73684138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_75271.known	chr2	-	4210	14	FSM	ENSMUSG00000027104.19	ENSMUST00000055833.12	4210	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_13	80.0395612241018	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722958	73646852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710724_73722818
transcript_75273.known	chr2	-	723	5	FSM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	880	junction_4	1495.60896878161	2198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741669	73738790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741585
transcript_75276.known	chr2	-	862	4	FSM	ENSMUSG00000018770.10	ENSMUST00000142768.8	862	4	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_3	1115.93219626762	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTGTTGTGTCTCTTT	NA	False	NA	-121	True	NA	NA	NA	73741626	73739074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73739722_73740207_73740286_73741298_73741405_73741595
transcript_75277.known	chr2	-	770	3	FSM	ENSMUSG00000018770.10	ENSMUST00000155474.2	770	3	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_2	1124.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACCAGTGTAATCAGCAG	NA	False	NA	NA	False	NA	NA	NA	73741635	73739661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_73740286_73741298_73741405_73741595
transcript_75282.known	chr2	-	3195	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTTTATTTTTATTTT	NA	False	NA	-14	True	ATTAAA	-43	NA	74409292	74350677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_75286.known	chr2	-	2120	12	FSM	ENSMUSG00000009207.16	ENSMUST00000134641.8	2120	12	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	78.2650719516906	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTTAAATATCTAG	NA	False	NA	-14	True	AATAAA	-18	NA	74409275	74351676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_75288.known	chr2	-	4096	5	FSM	ENSMUSG00000009207.16	ENSMUST00000154706.8	4096	5	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_2	34.6914975174033	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAGAAAAAGTATT	NA	False	NA	NA	False	AATGAA	-6	NA	74409260	74381711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_75291.known	chr2	-	580	1	FSM	ENSMUSG00000075279.6	ENSMUST00000173086.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	285	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACTGACTGGCCGGGCG	NA	False	NA	NA	False	NA	NA	NA	74422253	74421673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_74421700_74422300
transcript_75292.known	chr2	+	2483	2	FSM	ENSMUSG00000001819.5	ENSMUST00000001872.5	2483	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTATTTGACATTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	74498653	74501943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_74499423_74500229
transcript_75295.known	chr2	+	2136	2	FSM	ENSMUSG00000043342.10	ENSMUST00000059272.10	2136	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGTGACTGCTCTCTG	NA	False	NA	NA	False	AATAAA	-41	NA	74528070	74530552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_74529178_74529523
transcript_75296.known	chr2	+	1494	2	FSM	ENSMUSG00000101174.9	ENSMUST00000111980.4	1494	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGCTTCCAGTGGCCC	NA	False	NA	NA	False	NA	NA	NA	74557417	74559467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_74558050_74558605
transcript_75298.known	chr2	+	1862	2	FSM	ENSMUSG00000042448.6	ENSMUST00000047793.6	1862	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTCTCTGCCTTTTCTTA	NA	False	NA	NA	False	AATAAA	-15	NA	74593323	74595486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_74594098_74594398
transcript_75300.known	chr2	+	2950	10	FSM	ENSMUSG00000027099.10	ENSMUST00000028511.8	2950	10	0	0	0	0	multi-exon	FALSE	canonical	3	767	junction_7	57.1160827926797	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATCGTAGAAAATAGAGA	NA	False	NA	NA	False	AATAAA	-22	NA	74656146	74708775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_74656388_74677581_74677630_74678642_74678690_74689748_74689822_74697214_74697292_74698663_74698757_74699226_74699266_74699647_74699774_74700751_74700829_74706646
transcript_75307.nnic	chr2	-	748	2	Genic_Genomic	ENSMUSG00000081406.5	novel	750	1	NA	NA	-36	77	multi-exon	FALSE	canonical	0	0	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTCAAATGGCACAACAA	NA	False	NA	NA	False	NA	NA	NA	75022202	75021339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr2_-_75021913_75022027
transcript_75308.known	chr2	-	750	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8626	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	75022166	75021416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_75021400_75022200
transcript_75309.known	chr2	+	5150	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111962.8	5150	11	0	0	0	0	multi-exon	FALSE	canonical	3	3726	junction_1	2097.55310779012	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTTTTATCATTTTG	7481	False	NA	3	True	ATTAAA	-18	NA	75489610	75499751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
transcript_75314.known	chr2	+	1654	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	0	0	0	0	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAGTTAACACGTGAA	7475	False	NA	NA	False	NA	NA	NA	75489604	75496183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
transcript_75321.nic	chr2	+	548	4	ISM	ENSMUSG00000059005.14_ENSMUSG00000093242.4	ENSMUST00000090792.11	1140	10	-51	3236	0	17	5prime_fragment	FALSE	canonical	3	3912	junction_1	3298.26846828588	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGATTTGCTTTTGTAA	7481	False	NA	NA	False	NA	NA	NA	75489610	75492394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239
transcript_75326.known	chr2	-	2475	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGACTTTTTGAATTTA	NA	False	NA	1	True	AATAAA	-22	NA	75534985	75505856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
transcript_75336.known	chr2	-	1447	2	FSM	ENSMUSG00000015839.7	ENSMUST00000152371.2	1447	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTGGACATGATAAAATCT	NA	False	NA	NA	False	ATTAAA	-18	NA	75534833	75521395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_75522717_75534707
transcript_75337.known	chr2	+	7359	20	FSM	ENSMUSG00000042410.17	ENSMUST00000047232.14	7359	20	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_12	64.0151038271871	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGTTTACAGAACCTTT	487	False	NA	5	True	AATAAA	-17	NA	75662520	75761694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_75662856_75681837_75681928_75683065_75683157_75684513_75684635_75684874_75684950_75687360_75687433_75689242_75689323_75692277_75692359_75697090_75697217_75698648_75698758_75707814_75707943_75718459_75718512_75722135_75722213_75724388_75724502_75730525_75730596_75733261_75733324_75735202_75735293_75739944_75740045_75741964_75742023_75756265
transcript_75341.known	chr2	+	2589	14	FSM	ENSMUSG00000042410.17	ENSMUST00000111952.9	2589	14	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_12	57.9822458033696	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATGGTTGTTGTTAT	499	False	NA	NA	False	AATAAA	-21	NA	75662532	75725552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_75662856_75681837_75681928_75683065_75683157_75684513_75684635_75684874_75684950_75687360_75687433_75689242_75689323_75692277_75692359_75697090_75697217_75698648_75698758_75707814_75707943_75718459_75718512_75722135_75722213_75724388
transcript_75346.nic	chr2	+	1905	11	ISM	ENSMUSG00000042410.17	ENSMUST00000111952.9	2589	14	-65	17066	-53	179	5prime_fragment	FALSE	canonical	3	679	junction_7	52.2421285936934	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAGAAAGAAAAAGAAAGG	434	False	NA	NA	False	NA	NA	NA	75662467	75708486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_75662856_75681837_75681928_75683065_75683157_75684513_75684635_75684874_75684950_75687360_75687433_75689242_75689323_75692277_75692359_75697090_75697217_75698648_75698758_75707814
transcript_75348.known	chr2	-	2737	1	FSM	ENSMUSG00000075273.5	ENSMUST00000099996.5	2737	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGCGGTGTTTAGCGCC	NA	False	NA	NA	False	NA	NA	NA	75768929	75766192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_75766200_75768900
transcript_75349.known	chr2	-	2431	1	FSM	ENSMUSG00000075272.5	ENSMUST00000099995.5	2431	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGCTTGAGGCTTTTTA	NA	False	NA	NA	False	AATAAA	-12	NA	75808514	75806083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_75806100_75808500
transcript_75353.known	chr2	-	655	4	FSM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_3	45.146674542232	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190794	76184285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_76184581_76186423_76186617_76187916_76187946_76190656
transcript_75356.known	chr2	+	1898	10	FSM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	22.7991769398766	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTTATTTATATGAA	NA	False	NA	55	True	AATAAA	-21	NA	76200327	76214112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76213798
transcript_75358.nnic	chr2	+	2497	10	NNC	ENSMUSG00000042369.9	novel	1898	10	NA	NA	-66	5795	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	106.437717254369	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTTACAGTCTTATTA	NA	False	NA	NA	False	AATAAA	-32	NA	76200261	76219907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76219060
transcript_7536.nic	chr1	-	2451	17	ISM	ENSMUSG00000026608.14	ENSMUST00000085678.8	3706	18	-69	2706	-68	0	5prime_fragment	FALSE	canonical	3	162	junction_12	18.4831003892745	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGTTGATATTGAATTA	NA	False	NA	NA	False	NA	NA	NA	188740106	188705997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_188706402_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596_188728738_188729158_188729240_188729473_188729533_188732449_188732524_188733539_188733586_188734101_188734156_188739726
transcript_75365.known	chr2	+	8037	27	FSM	ENSMUSG00000042359.19	ENSMUST00000077972.11	8037	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	14.533169570038	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACCTGGTGTGTGTTGAC	NA	False	NA	NA	False	AATAAA	-23	NA	76236881	76430987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76390529_76390605_76395127_76395294_76398452_76398587_76399363_76399388_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
transcript_75371.nic	chr2	+	3298	26	ISM	ENSMUSG00000042359.19	ENSMUST00000077972.11	8037	27	-39	5765	-9	-1167	5prime_fragment	FALSE	canonical	0	0	junction_14	14.8108068652589	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTAAGTAAGTCAGCCA	NA	False	NA	NA	False	AAAACA	-21	NA	76236842	76425222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76390529_76390605_76395127_76395294_76398452_76398587_76399363_76399388_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107
transcript_75377.nic	chr2	+	3376	25	NIC	ENSMUSG00000042359.19	novel	8037	27	NA	NA	-9	-3	combination_of_known_junctions	FALSE	canonical	3	6	junction_11	10.767427733679	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTTCTTATAGCTACG	NA	False	NA	3	True	AATAAA	-14	NA	76236842	76426386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
transcript_75380.known	chr2	+	3853	25	FSM	ENSMUSG00000042359.19	ENSMUST00000111930.9	3853	25	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_10	10.6640621820309	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACAGAGTGCTGGCGTG	NA	False	NA	NA	False	AATAAA	-35	NA	76236901	76426940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76390529_76390605_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
transcript_75389.nnic	chr2	+	3283	24	NIC	ENSMUSG00000042359.19	novel	3853	25	NA	NA	-9	-3	combination_of_known_splicesites	FALSE	canonical	3	13	junction_10	9.67955380246139	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTTCTTATAGCTACG	NA	False	NA	3	True	AATAAA	-14	NA	76236842	76426386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
transcript_754.nnic	chr1	+	2572	9	NNC	ENSMUSG00000004768.15	novel	4322	8	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	49.6758240998577	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGCTTTTCCTTTCTTT	NA	False	NA	8	True	TATAAA	-18	NA	33758943	33779792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775200_33775272_33775880_33775964_33777368_33777462_33778333
transcript_75408.known	chr2	+	422	2	FSM	ENSMUSG00000042359.19	ENSMUST00000134213.2	422	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCGGAGAACGAATGACAC	NA	False	NA	NA	False	NA	NA	NA	76236904	76237811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_76237034_76237518
transcript_75409.known	chr2	+	593	2	FSM	ENSMUSG00000042359.19	ENSMUST00000133275.2	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAACTTTGTTTTCCTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	76236851	76238275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_76237034_76237864
transcript_75410.known	chr2	-	1614	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_1	7.52953368748825	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTAGCTTTATTCTTTGT	NA	False	NA	35	True	NA	NA	NA	76478359	76460241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
transcript_75412.nic	chr2	-	1062	6	ISM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	-243	6846	-243	51	5prime_fragment	FALSE	canonical	3	42	junction_4	3.65513337649941	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCCTTCATTTCTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	76478602	76467087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
transcript_75413.known	chr2	-	860	4	FSM	ENSMUSG00000002732.15	ENSMUST00000002809.14	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	10.2089285540757	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGCAAATCTGACT	NA	False	NA	-13	True	AATAAA	-26	NA	76503414	76493387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_76493697_76496020_76496155_76502040_76502193_76503149
transcript_75416.known	chr2	+	2534	8	FSM	ENSMUSG00000002733.9	ENSMUST00000111920.2	2534	8	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_7	23.0465367711259	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATTTTGTTTATTG	6506	False	NA	6	True	ATTAAA	-19	NA	76505624	76527172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_76505979_76510506_76510624_76513073_76513230_76516962_76517100_76517625_76517791_76520788_76520833_76522992_76523109_76525727
transcript_7542.nic	chr1	-	1992	12	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	-49	19228	-49	-1109	5prime_fragment	FALSE	canonical	3	128	junction_1	16.4859068287717	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATGTGAAGAATTGAAAGA	NA	False	NA	NA	False	NA	NA	NA	189420332	189392030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
transcript_75423.known	chr2	-	6222	24	FSM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_12	5.82219207901242	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCCTGTGTATACAAT	NA	False	NA	NA	False	AGTAAA	-17	NA	77000961	76840338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_76842102_76844737_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
transcript_75426.nic	chr2	-	3021	18	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	-24	20571	-5	82	5prime_fragment	FALSE	canonical	3	17	junction_6	6.20190840145751	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAGAAAGTTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	77000985	76860909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
transcript_75428.nic	chr2	-	2994	18	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	-79	20653	-60	0	5prime_fragment	FALSE	canonical	3	17	junction_6	6.20190840145751	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATGAGAAATCTCG	NA	False	NA	NA	False	CATAAA	-35	NA	77001040	76860991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
transcript_7543.known	chr1	-	3001	12	FSM	ENSMUSG00000026605.15	ENSMUST00000165962.2	3001	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	46.289245131845	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTAAAAAAAACATTGAAG	NA	False	NA	NA	False	AATGAA	-16	NA	189420283	189390921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412468_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
transcript_75439.known	chr2	-	2720	18	FSM	ENSMUSG00000042272.18	ENSMUST00000102659.2	2720	18	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_17	13.2907335619941	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTATTTAATTTGGTAG	NA	False	NA	NA	False	AATAAA	-14	NA	77110936	77016898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_77017605_77018843_77018966_77021304_77021497_77022042_77022166_77022842_77022925_77027166_77027327_77028632_77028748_77029209_77029405_77036549_77036673_77042703_77042916_77045405_77045462_77047266_77047365_77048432_77048547_77061007_77061122_77064992_77065084_77071956_77072066_77075360_77075431_77110898
transcript_75448.nnic	chr2	-	414	2	Antisense	novelGene_ENSMUSG00000081611.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAGATAAACATGAGAGTCA	7310	False	NA	NA	False	NA	NA	NA	77139841	77117259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr2_-_77117450_77139617
transcript_7545.nic	chr1	-	1940	12	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	-49	19280	-49	-1161	5prime_fragment	FALSE	canonical	3	128	junction_1	16.4859068287717	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGAGAAAGAGTTTGAAA	NA	False	NA	NA	False	AAGAAA	-42	NA	189420332	189392082	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
transcript_75451.known	chr2	-	2642	8	FSM	ENSMUSG00000027016.18	ENSMUST00000111830.9	2642	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	1.29362644830535	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAATCTGCTGG	NA	False	NA	NA	False	AATAAA	-7	NA	77349962	77240977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_77242485_77244297_77244400_77244916_77245096_77246073_77246320_77280494_77280658_77307078_77307190_77333883_77334027_77349771
transcript_75453.known	chr2	-	3471	21	FSM	ENSMUSG00000027014.15	ENSMUST00000065889.10	3471	21	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_20	67.1203955590251	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCAGTGAGGTACTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	77776719	77725996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
transcript_75454.nic	chr2	-	3175	21	NIC	ENSMUSG00000027014.15	novel	3471	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	70.3935188778058	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776533	77726109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77770645_77770707_77776493
transcript_75455.nic	chr2	-	3167	21	NIC	ENSMUSG00000027014.15	novel	3471	21	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	72.1889707642379	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776546	77726109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
transcript_75456.nic	chr2	-	3151	21	NIC	ENSMUSG00000027014.15	novel	3090	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	75.0276449050615	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776527	77726109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77770645_77770707_77776493
transcript_75458.known	chr2	-	3388	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111821.9	3388	20	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_19	43.213763581536	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCAGTGAGGTACTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	77776697	77725996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
transcript_75459.nic	chr2	-	3335	20	NIC	ENSMUSG00000027014.15	novel	3090	20	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	102	junction_18	49.445736787175	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776754	77726109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77776493
transcript_75461.known	chr2	-	3255	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111818.8	3255	20	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	52.4085273558816	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTGTCTTTTTTTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	77776697	77726111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
transcript_75462.known	chr2	-	3090	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111819.8	3090	20	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	57.3448044097962	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776527	77726109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763111_77766936_77767067_77776493
transcript_75466.known	chr2	-	533	6	FSM	ENSMUSG00000027014.15	ENSMUST00000128963.2	533	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	114.862352404955	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCGACATGGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	77776533	77759716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
transcript_75467.known	chr2	+	2249	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGGTCCTAAGTATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	78699390	78751637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
transcript_75471.known	chr2	+	5168	18	FSM	ENSMUSG00000027007.17	ENSMUST00000111785.9	5168	18	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_14	7.70386143235054	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAAATTTATTTTTTGAG	NA	False	NA	19	True	AATAAA	-20	NA	79465695	79503310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_79466089_79466376_79466423_79469600_79469651_79470489_79470547_79472305_79472346_79472434_79472534_79473747_79473957_79474748_79475453_79481731_79481805_79485430_79485520_79487490_79488694_79490576_79490655_79490736_79490865_79491197_79491349_79491982_79492049_79492652_79493109_79501073_79501192_79502102
transcript_75478.known	chr2	+	4042	23	FSM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_19	21.5763108543292	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTCTTTTGAAGATGAT	NA	False	NA	12	True	AATAAA	-18	NA	80145809	80184387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
transcript_75489.nic	chr2	+	521	3	ISM	ENSMUSG00000027006.14	ENSMUST00000125000.8	1034	5	208	5591	208	-5591	5prime_fragment	FALSE	canonical	3	256	junction_2	20.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGCATATGAAGTACTCA	NA	False	NA	NA	False	AATAAA	-1	NA	80146017	80149541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_80146150_80147592_80147944_80149503
transcript_75491.known	chr2	-	4469	31	FSM	ENSMUSG00000027002.14	ENSMUST00000028386.12	4469	31	0	0	0	0	multi-exon	TRUE	canonical	3	653	junction_15	66.8594213422628	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTCTTTAAAATCTTTG	NA	False	NA	0	True	AATAAA	-25	NA	80411608	80330855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_80331756_80332568_80332659_80336516_80336627_80337164_80337282_80339055_80339150_80343020_80343102_80343457_80343541_80348238_80348333_80349902_80350001_80350182_80350314_80350715_80350935_80353719_80353852_80354881_80355022_80355902_80356023_80358878_80359012_80360501_80360648_80363988_80364048_80365817_80365900_80368447_80368581_80370462_80370570_80370853_80370951_80371806_80371864_80375333_80375491_80378244_80378294_80379173_80379312_80383480_80383572_80383650_80383794_80384545_80384603_80385041_80385135_80400462_80400574_80411201
transcript_75499.known	chr2	+	1559	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATTTGTTTGGAAGGT	NA	False	NA	12	True	AATAAA	-21	NA	80469159	80489246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
transcript_7550.known	chr1	-	11130	18	FSM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_7	50.2666247525517	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAACAGGCTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	189420283	189372802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_189375000_189378998_189379178_189380807_189381285_189382758_189382919_189383344_189383498_189384457_189387290_189388841_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
transcript_75505.known	chr2	+	1324	4	FSM	ENSMUSG00000027001.11	ENSMUST00000147290.8	1324	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	41.0446910899164	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTTGTGGGGTTTTTTT	NA	False	NA	NA	False	TTTAAA	-19	NA	80447443	80462074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_80447629_80451537_80451585_80454551_80454705_80461135
transcript_75506.known	chr2	+	1632	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	4.10960933531265	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCTTCAAGTGATTGT	NA	False	NA	NA	False	NA	NA	NA	80447388	80462005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
transcript_75507.known	chr2	+	1993	4	FSM	ENSMUSG00000027001.11	ENSMUST00000151204.2	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	40.1441845795323	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAGTACATACTGCAAA	NA	False	NA	NA	False	AATAAA	-15	NA	80447609	80462705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_80447951_80451537_80451585_80454669_80454705_80461135
transcript_75509.known	chr2	+	2111	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGCCTTTTTCTTTTA	NA	False	NA	28	True	AATAAA	-36	NA	83474778	83494966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
transcript_75511.nic	chr2	+	894	6	ISM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	-16	4439	-16	0	5prime_fragment	FALSE	canonical	3	656	junction_4	87.6251105562783	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAGAAGAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	83474762	83490527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401
transcript_75512.nic	chr2	+	760	5	ISM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	-16	6009	-16	311	5prime_fragment	FALSE	canonical	3	656	junction_4	96.128494734912	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATAGTATGTCCTTTT	NA	False	NA	76	True	AGTAAA	-39	NA	83474762	83488957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873
transcript_75513.known	chr2	+	755	4	FSM	ENSMUSG00000027091.15	ENSMUST00000130948.8	755	4	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	33.4697209761633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGTTTCGATTTGTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	83474824	83488646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352
transcript_75514.nic	chr2	+	438	3	ISM	ENSMUSG00000027091.15	ENSMUST00000130948.8	755	4	-62	1260	-16	-1024	5prime_fragment	FALSE	canonical	3	844	junction_1	35.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAGAAAGATGACAAGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	83474762	83487386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_83475072_83483701_83483804_83487359
transcript_75516.known	chr2	+	7054	30	FSM	ENSMUSG00000027087.12	ENSMUST00000028499.11	7054	30	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	22.0930902622631	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTGGATTCTATCC	NA	False	NA	21	True	AATAAA	-21	NA	83554740	83637260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_83555264_83566853_83566985_83578196_83578289_83586149_83586265_83592211_83592274_83593995_83594042_83596111_83596238_83596970_83597016_83598638_83598683_83599035_83599093_83600396_83600450_83601478_83601682_83606711_83606904_83609357_83609404_83612282_83612391_83614148_83614208_83615676_83615832_83619260_83619399_83621538_83621607_83622236_83622385_83622894_83622988_83624577_83624658_83625262_83625344_83625782_83625889_83626429_83626589_83627694_83627797_83632113_83632228_83632321_83632430_83633223_83633347_83633583
transcript_75517.known	chr2	+	5614	8	FSM	ENSMUSG00000048388.4	ENSMUST00000051454.4	5614	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	1.35526185435788	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTAGTGTTTAATTTC	NA	False	NA	3	True	AATAAA	-16	NA	83642979	83713830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_83643322_83683713_83683948_83685780_83685874_83688561_83688718_83690750_83690922_83707014_83707132_83708499_83708624_83709453
transcript_75518.known	chr2	+	2493	1	FSM	ENSMUSG00000094125.2	ENSMUST00000179192.2	2493	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAGAAGCAAAGAAGCC	NA	False	NA	NA	False	NA	NA	NA	83786036	83788529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_83786000_83788500
transcript_75519.known	chr2	+	2493	1	FSM	ENSMUSG00000096484.2	ENSMUST00000180347.2	2493	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAGAAGCAAAGAAGCC	NA	False	NA	NA	False	NA	NA	NA	83803466	83805959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_83803500_83806000
transcript_75520.known	chr2	+	2493	1	FSM	ENSMUSG00000096337.2	ENSMUST00000178533.2	2493	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAGAAGCAAAGAAGCC	2685	False	NA	NA	False	NA	NA	NA	83809276	83811769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_83809300_83811800
transcript_75521.known	chr2	+	2493	1	FSM	ENSMUSG00000095824.2	ENSMUST00000099948.3	2493	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAGAAGCAAAGAAGCC	2236	False	NA	NA	False	NA	NA	NA	83815086	83817579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_83815100_83817600
transcript_75522.known	chr2	+	2493	1	FSM	ENSMUSG00000079247.3	ENSMUST00000099947.3	2493	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAGAAGCAAAGAAGCC	8046	False	NA	NA	False	NA	NA	NA	83820896	83823389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_83820900_83823400
transcript_75525.nnic	chr2	-	1581	10	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_9	79.6129526033435	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307107	84263198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286_84304530_84307034
transcript_75527.nic	chr2	-	1352	9	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307121	84263198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
transcript_75528.nic	chr2	-	1321	9	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_8	40.1230529122598	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307140	84263198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
transcript_7553.nic	chr1	-	1166	7	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	-49	38406	-49	4814	5prime_fragment	FALSE	canonical	3	133	junction_2	13.4164078649987	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAGAATTTTGAATAAAA	NA	False	NA	NA	False	NA	NA	NA	189420332	189411208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
transcript_75531.known	chr2	-	1232	8	FSM	ENSMUSG00000027082.16	ENSMUST00000111722.8	1232	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	72.9078255087077	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84304128	84263198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84263529_84264585_84264766_84274353_84274465_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042
transcript_75533.known	chr2	-	6119	20	FSM	ENSMUSG00000034101.15	ENSMUST00000067232.10	6119	20	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_18	71.3035336138201	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTACTGGTCTGTTCCCA	NA	False	NA	NA	False	TATAAA	-41	NA	84481020	84430416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84456363_84456482_84480749
transcript_75534.known	chr2	-	5380	19	FSM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_18	37.1560356827033	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	-38	True	AATAAA	-16	NA	84481109	84431126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
transcript_75535.known	chr2	-	6170	19	FSM	ENSMUSG00000034101.15	ENSMUST00000111692.8	6170	19	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_17	80.2536295860094	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTACTGGTCTGTTCCCA	NA	False	NA	NA	False	TATAAA	-41	NA	84481089	84430416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84456363_84456482_84480749
transcript_75538.known	chr2	-	5294	18	FSM	ENSMUSG00000034101.15	ENSMUST00000111697.9	5294	18	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	44.1949127323348	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAGGTCTGTGTCATT	NA	False	NA	-36	True	AATAAA	-18	NA	84481084	84431124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
transcript_7554.nic	chr1	-	1034	7	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	5	38484	5	4736	5prime_fragment	FALSE	canonical	3	133	junction_2	13.4164078649987	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAATGAGAAGCCAAGTGA	NA	False	NA	NA	False	AAAAAG	-43	NA	189420278	189411286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
transcript_75545.known	chr2	-	4706	12	FSM	ENSMUSG00000034075.11	ENSMUST00000035840.6	4706	12	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_5	28.4648543626047	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTGCTATTCCTTTGTT	NA	False	NA	NA	False	AATACA	-15	NA	84545524	84518313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84519789_84520193_84521054_84521469_84521583_84522229_84522354_84522676_84522810_84523692_84523785_84524658_84524762_84524913_84525087_84526586_84526745_84532676_84532799_84540661_84541817_84545326
transcript_75552.known	chr2	-	1977	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	1374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTTGCTGTTTTTCCT	5291	False	NA	-8	True	AATAAA	-16	NA	84508400	84501660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
transcript_75556.known	chr2	-	1926	7	FSM	ENSMUSG00000050043.17	ENSMUST00000111664.8	1926	7	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_5	582.842865235181	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTTGCTGTTTTTCCTT	5229	False	NA	-7	True	AATAAA	-17	NA	84508462	84501659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506440_84506502_84508194
transcript_75562.known	chr2	+	3052	5	FSM	ENSMUSG00000086598.10	ENSMUST00000133437.3	3052	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	7.11951543294907	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTGCTTTGTGGTTTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	84489889	84499124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84489938_84490440_84490526_84491391_84491504_84491774_84491945_84496487
transcript_75563.known	chr2	+	2059	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_3	24.2525771826418	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGCTGGAGTCTTCCCT	3357	False	NA	12	True	AATAAA	-21	NA	84508745	84518559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
transcript_75566.nic	chr2	+	3443	4	NIC	ENSMUSG00000086598.10	novel	3052	5	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	3.2659863237109	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTGCTTTGTGGTTTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	84489386	84499124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_84489938_84490440_84490526_84491774_84491945_84496487
transcript_75568.nic	chr2	+	739	4	ISM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	-43	1943	-43	-1227	5prime_fragment	FALSE	canonical	3	447	junction_3	25.381533094402	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAGAAGAAGGTAGGGG	3314	False	NA	32	True	NA	NA	NA	84508702	84516616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534
transcript_75574.known	chr2	-	747	4	FSM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	271.099407761966	936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTTTAAATTTTGTCTT	296	False	NA	-8	True	AATAAA	-25	NA	84501114	84499558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84499742_84500330_84500461_84500588_84500735_84500826
transcript_75575.known	chr2	-	654	4	FSM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	946.216677088287	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	358	False	NA	-14	True	AATAAA	-19	NA	84501052	84499564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84499742_84500355_84500461_84500588_84500735_84500826
transcript_75576.known	chr2	-	783	3	FSM	ENSMUSG00000076437.12	ENSMUST00000102646.4	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_1	111	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTTGTAGTTAAGGTT	369	False	NA	NA	False	AATAAA	-15	NA	84501041	84500038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84500461_84500588_84500735_84500826
transcript_75577.known	chr2	-	1912	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	30.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGATTCTTTTTTT	NA	False	NA	-21	True	AATAAA	-17	NA	84557694	84553465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84554562_84555872_84556501_84557506
transcript_75578.known	chr2	-	1208	2	FSM	ENSMUSG00000027079.16	ENSMUST00000138231.2	1208	2	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGGTATGATTCTTTTT	NA	False	NA	-23	True	AATAAA	-15	NA	84557620	84553467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84554562_84557506
transcript_75579.known	chr2	-	726	2	FSM	ENSMUSG00000097187.2	ENSMUST00000181711.2	726	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCTCCTGCTTCCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	84573999	84572512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84573045_84573805
transcript_75580.known	chr2	-	1768	8	FSM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_7	34.9080424626107	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCAGACATTTTCTTCT	NA	False	NA	-26	True	AATAAA	-1	NA	84605748	84595730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083_84605159_84605706
transcript_75582.nic	chr2	-	1805	7	ISM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	511	0	235	0	3prime_fragment	FALSE	canonical	3	78	junction_3	14.4270194041905	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCAGACATTTTCTTCT	NA	False	NA	-26	True	AATAAA	-1	NA	84605237	84595730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083
transcript_75583.known	chr2	+	1560	4	FSM	ENSMUSG00000027078.15	ENSMUST00000102642.9	1560	4	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_3	17.1075032271418	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCAGAAGTCGGACTTCA	NA	False	NA	NA	False	GATAAA	-13	NA	84629171	84640520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348
transcript_75585.known	chr2	-	1761	8	FSM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	63.4909603078763	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	NA	False	NA	-19	True	AATAAA	-19	NA	84652996	84641519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321_84647368_84647467_84647601_84648619_84649255_84652836
transcript_75586.nic	chr2	-	888	5	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	5574	0	5574	0	3prime_fragment	FALSE	canonical	3	6	junction_4	55.2222781130949	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	3343	False	NA	-19	True	AATAAA	-19	NA	84647422	84641519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321
transcript_75587.nic	chr2	-	1027	4	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	6373	0	6373	0	3prime_fragment	FALSE	canonical	3	109	junction_3	14.8996644257513	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	4142	False	NA	-19	True	AATAAA	-19	NA	84646623	84641519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227
transcript_75589.known	chr2	+	690	3	FSM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	17.5	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCTTTACTTGAGA	6417	False	NA	10	True	ATTAAA	-15	NA	84657340	84660557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84657492_84657942_84658058_84660133
transcript_75590.nic	chr2	+	2543	15	NIC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	-172	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	18.8209880674936	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	NA	False	NA	12	True	AATAAA	-14	NA	84669566	84693925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_84669850_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_75592.known	chr2	+	2539	15	FSM	ENSMUSG00000027075.17	ENSMUST00000028469.14	2539	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	14.9196829314671	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTATCTGTGACTG	NA	False	NA	17	True	AATAAA	-19	NA	84669751	84693930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_75594.known	chr2	+	2556	15	FSM	ENSMUSG00000027075.17	ENSMUST00000111624.8	2556	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	20.7551321413303	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	307	False	NA	12	True	AATAAA	-14	NA	84670542	84693925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84670839_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_75597.nic	chr2	+	3537	14	NIC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	-65	0	intron_retention	FALSE	canonical	3	43	junction_1	15.4214942598667	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	NA	False	NA	12	True	AATAAA	-14	NA	84669673	84693925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_7560.nic	chr1	-	687	5	ISM	ENSMUSG00000026605.15	ENSMUST00000165962.2	3001	12	-49	23699	-49	1402	5prime_fragment	FALSE	canonical	3	150	junction_2	9.31061222476804	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAATAAAGAAGTTGAAGA	NA	False	NA	NA	False	AAGAAA	-3	NA	189420332	189414620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
transcript_75603.known	chr2	+	2487	14	FSM	ENSMUSG00000027075.17	ENSMUST00000111625.2	2487	14	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	11.2969598465759	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGTGACTGGAGGAGTA	733	False	NA	25	True	AATAAA	-27	NA	84670968	84693938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_75604.known	chr2	-	1263	3	FSM	ENSMUSG00000050896.13	ENSMUST00000054514.6	1263	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGGTGCTTAGACGGAAG	NA	False	NA	NA	False	NA	NA	NA	84717036	84702289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84703040_84710731_84711214_84717005
transcript_75608.known	chr2	+	2583	13	FSM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_9	6.42693982821961	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGCTTCTACCTCTTTG	NA	False	NA	9	True	AATAAA	-20	NA	84767007	84788853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
transcript_7562.nic	chr1	-	660	4	ISM	ENSMUSG00000026605.15	ENSMUST00000165962.2	3001	12	-49	24118	-49	983	5prime_fragment	FALSE	canonical	3	150	junction_1	10.2740233382816	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTATTGTATCTGTATAAA	NA	False	NA	NA	False	NA	NA	NA	189420332	189415039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_189415149_189415964_189416162_189417141_189417336_189420172
transcript_75621.known	chr2	+	2739	17	FSM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_7	140.688874382447	1913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867577	84877453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
transcript_75629.known	chr2	+	2721	17	FSM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	374.603436149483	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGATGTCCTTATGTCTC	NA	False	NA	20	True	AATAAA	-16	NA	84867794	84877450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
transcript_7564.nic	chr1	-	531	3	ISM	ENSMUSG00000026605.15	ENSMUST00000165962.2	3001	12	-49	25063	-49	38	5prime_fragment	FALSE	canonical	3	160	junction_1	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAACAGGAACTTAAGCG	NA	False	NA	NA	False	AATAGA	-5	NA	189420332	189415984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_189416162_189417141_189417336_189420172
transcript_75653.nic	chr2	+	2152	15	ISM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	-64	1337	-64	0	5prime_fragment	FALSE	canonical	3	1260	junction_7	144.415782957913	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTGTTGGGAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	84867513	84876116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027
transcript_75664.known	chr2	+	2069	15	FSM	ENSMUSG00000027067.17	ENSMUST00000130729.3	2069	15	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	394.014295814406	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGTGTTGGGAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	84867798	84876116	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027
transcript_75691.known	chr2	-	1812	12	FSM	ENSMUSG00000027071.15	ENSMUST00000028465.14	1812	12	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_11	6.62452243717697	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTAGGTGTCTACTCTT	NA	False	NA	NA	False	AATGAA	-1	NA	84865831	84828926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_84829471_84829949_84830028_84830667_84830734_84831000_84831095_84852072_84852210_84852691_84852834_84853497_84853576_84853826_84853921_84854453_84854518_84854725_84854798_84855199_84855336_84865524
transcript_757.nnic	chr1	+	2354	8	NNC	ENSMUSG00000004768.15	novel	4322	8	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	40.1512446753471	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGCTTTTCCTTTCTTT	NA	False	NA	8	True	TATAAA	-18	NA	33758937	33779792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_33759102_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
transcript_7570.known	chr1	-	1027	1	FSM	ENSMUSG00000026605.15	ENSMUST00000194165.2	1027	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAGGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	189420283	189419256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_189419300_189420300
transcript_75713.nnic	chr2	+	5872	12	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	-122	0	combination_of_known_splicesites	FALSE	canonical	3	133	junction_1	44.7158152361265	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	2	True	AATAAA	-11	NA	84878243	84903382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
transcript_75717.known	chr2	+	5747	12	FSM	ENSMUSG00000033955.14	ENSMUST00000111605.9	5747	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	72.8463797406729	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGGATTGTGGTGTGTG	NA	False	NA	12	True	AATAAA	-21	NA	84880803	84903392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_84880905_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
transcript_7572.known	chr1	+	10746	19	FSM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_17	4.78713553878169	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTTTTGGTAACAC	NA	False	NA	NA	False	AATAAA	-19	NA	189460464	189608892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_189460862_189518832_189519146_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220_189583705_189587121_189587266_189588830_189589050_189592654_189592784_189595400_189595636_189597568_189597733_189602123
transcript_75722.nnic	chr2	+	5279	11	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	10	-889	combination_of_known_splicesites	FALSE	canonical	3	133	junction_1	43.1156584085179	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTGATCAGGGGCCAAGG	NA	False	NA	NA	False	AAAAAG	-6	NA	84878375	84902493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439
transcript_75723.nnic	chr2	+	3636	11	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_5	74.1261762132649	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	2	True	AATAAA	-11	NA	84878350	84903382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
transcript_75725.nnic	chr2	+	5241	10	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	-14	-1183	combination_of_known_splicesites	FALSE	canonical	3	133	junction_1	40.5873543524745	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCAGGGTAAGTAACACT	NA	False	NA	NA	False	NA	NA	NA	84878351	84902199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049
transcript_75732.nnic	chr2	+	3099	6	NIC	ENSMUSG00000033955.14	novel	4199	6	NA	NA	-5	106	combination_of_known_splicesites	FALSE	canonical	3	133	junction_1	24.7030362506312	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGAGGAGTTTGAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	84878360	84893035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231
transcript_75733.nnic	chr2	+	3363	6	NIC	ENSMUSG00000033955.14	novel	4199	6	NA	NA	-14	361	combination_of_known_splicesites	FALSE	canonical	3	133	junction_1	24.7030362506312	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAGAGCAGAGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	84878351	84893290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231
transcript_75735.nic	chr2	-	2202	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	7.40870359029762	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87327505	87319430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_87320426_87321167_87321750_87322478_87322789_87327190
transcript_75738.known	chr2	-	7634	24	FSM	ENSMUSG00000025314.17	ENSMUST00000168621.3	7634	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	19.3387863591537	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCTTCGATTGATTCA	NA	False	NA	NA	False	TATAAA	-15	NA	90410991	90263232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727_90276802_90278402_90278494_90280119_90280208_90280316_90280326_90281158_90281201_90282403_90282492_90283392_90283518_90283626_90283838_90285436_90285569_90288481_90288773_90289785_90290059_90290819_90291081_90293424_90293683_90294807_90295072_90298593_90298807_90299877_90300106_90301436_90301680_90305314_90305334_90410499
transcript_75743.known	chr2	+	5684	37	FSM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	112.76240658795	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTATATTAAGATTTAT	NA	False	NA	16	True	AATAAA	-18	NA	90507558	90566672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90507815_90509357_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
transcript_75766.nic	chr2	+	4066	18	NIC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-55	-549	combination_of_known_junctions	FALSE	canonical	3	33	junction_12	87.2084167868991	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGGTTATCCTTTTGCT	NA	False	NA	8	True	AATAAA	-17	NA	90575892	90610816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598196_90598300_90598859_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
transcript_75767.nic	chr2	+	4634	18	NIC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-74	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_12	87.2084167868991	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTCTTGATTAGCAG	NA	False	NA	18	True	AATAAA	-22	NA	90575873	90611365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598196_90598300_90598859_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
transcript_7577.nic	chr1	+	3706	13	ISM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	-151	24719	-151	0	5prime_fragment	FALSE	canonical	3	11	junction_2	5.22812904711937	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATTGTTGGATTGTAG	NA	False	NA	2	True	AATAAA	-15	NA	189460313	189584173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_189460862_189518832_189519146_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220
transcript_75772.known	chr2	+	4691	17	FSM	ENSMUSG00000008200.16	ENSMUST00000238890.2	4691	17	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_11	64.7446909020346	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTCTTGATTAGCAG	NA	False	NA	18	True	AATAAA	-22	NA	90575713	90611365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598859_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
transcript_75777.nic	chr2	+	3000	16	NIC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-74	1430	combination_of_known_junctions	FALSE	canonical	3	33	junction_12	77.3381033011686	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAGAAAGATAAGGTGAG	NA	False	NA	NA	False	NA	NA	NA	90575873	90608249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598196_90598300_90598859_90599045_90606248_90606566_90606674_90606820_90607908
transcript_7578.nnic	chr1	+	3021	12	NNC	ENSMUSG00000026604.18	novel	3810	2	NA	NA	10509	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	6.99468511333504	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATTGTTGGATTGTAG	NA	False	NA	2	True	AATAAA	-15	NA	189529377	189584173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_189529554_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220
transcript_75780.nic	chr2	+	5486	16	NIC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-55	0	intron_retention	FALSE	canonical	3	188	junction_7	57.9674238018408	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTCTTGATTAGCAG	NA	False	NA	18	True	AATAAA	-22	NA	90575892	90611365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
transcript_75784.nic	chr2	+	2920	15	ISM	ENSMUSG00000008200.16	ENSMUST00000238890.2	4691	17	137	3116	-97	1430	5prime_fragment	FALSE	canonical	3	117	junction_11	51.0724275626571	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAGAAAGATAAGGTGAG	NA	False	NA	NA	False	NA	NA	NA	90575850	90608249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598859_90599045_90606248_90606566_90606674_90606820_90607908
transcript_75788.nic	chr2	+	3859	14	NIC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-62	1430	intron_retention	FALSE	canonical	3	188	junction_7	42.8231536111845	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAGAAAGATAAGGTGAG	NA	False	NA	NA	False	NA	NA	NA	90575885	90608249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90599045_90606248_90606566_90606674_90606820_90607908
transcript_7579.nnic	chr1	+	2878	9	NNC	ENSMUSG00000026604.18	novel	3810	2	NA	NA	-403	168	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	6.18339510301582	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTCTGTGAGTTATTAT	NA	False	NA	NA	False	NA	NA	NA	189576836	189602433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_189576951_189578530_189578610_189582220_189583705_189587121_189587266_189588830_189589050_189592654_189592784_189595400_189595636_189597568_189597733_189602123
transcript_75800.nic	chr2	+	3559	11	ISM	ENSMUSG00000008200.16	ENSMUST00000238890.2	4691	17	137	11853	-97	1092	intron_retention	FALSE	canonical	3	188	junction_7	18.6614576065215	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAACCATACTTCTTTCAT	NA	False	NA	NA	False	CATAAA	-29	NA	90575850	90599512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751
transcript_75808.nic	chr2	+	1085	7	ISM	ENSMUSG00000008200.16	ENSMUST00000238890.2	4691	17	177	23567	-57	0	5prime_fragment	FALSE	canonical	3	195	junction_4	17.9412621877305	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAGTAATTTGTAAAG	NA	False	NA	NA	False	AAGAAA	-8	NA	90575890	90587798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679
transcript_75812.known	chr2	+	3448	17	FSM	ENSMUSG00000040812.15	ENSMUST00000111481.2	3448	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.242061459137964	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTGATTGTTTTACTA	NA	False	NA	NA	False	ATTAAA	-21	NA	90613916	90646575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90614018_90614329_90614470_90619276_90619412_90620122_90620177_90621803_90621990_90624216_90624325_90627779_90627934_90631380_90632164_90633385_90633543_90636142_90636270_90637642_90637744_90638321_90638453_90640291_90640362_90640984_90641108_90641600_90641709_90643618_90643697_90645683
transcript_75816.known	chr2	+	2596	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	0	0	0	0	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGGTGTGACTTAGTGGT	96	False	NA	NA	False	ATTAAA	-12	NA	90677498	90697154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_75818.nic	chr2	+	1182	13	NIC	ENSMUSG00000027282.18	novel	2596	13	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	704.955687141634	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGTGATTGGTGTCTGC	66	False	NA	48	True	NA	NA	NA	90677468	90695732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90677708_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_75822.known	chr2	+	2281	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	0	0	0	0	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCTTAGCCTGCTGC	214	False	NA	7	True	NA	NA	NA	90677616	90696984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_75826.known	chr2	+	1066	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111468.10	1066	12	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_1	628.312668913619	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGTGATTGGTGTCTGC	119	False	NA	48	True	NA	NA	NA	90677521	90695732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90677730_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_75832.known	chr2	+	2241	3	FSM	ENSMUSG00000027282.18	ENSMUST00000146392.8	2241	3	0	0	0	0	multi-exon	FALSE	canonical	3	2537	junction_1	192.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAAAAGTGATGCC	194	False	NA	NA	False	NA	NA	NA	90677596	90681964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90677730_90679714_90679800_90679941
transcript_75836.known	chr2	+	2377	13	FSM	ENSMUSG00000027282.18	ENSMUST00000150232.8	2377	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	734.005274542054	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCTTAGCCTGCTGC	172	False	NA	7	True	NA	NA	NA	90677574	90696984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683367_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_75837.known	chr2	+	1047	13	FSM	ENSMUSG00000027282.18	ENSMUST00000057216.15	1047	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	948.923465330875	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGATTGGTGTCTGCCTT	228	False	NA	51	True	NA	NA	NA	90677630	90695735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90677708_90679714_90679800_90679941_90680049_90683159_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_75840.known	chr2	-	1046	7	FSM	ENSMUSG00000005510.10	ENSMUST00000005647.4	1046	7	0	0	0	0	multi-exon	FALSE	canonical	3	1877	junction_6	40.2105569333339	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735171	90724979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
transcript_75842.nic	chr2	-	2777	5	NIC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	-44	0	intron_retention	FALSE	canonical	3	1877	junction_4	26.2963875846094	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735090	90724979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90734833_90734927
transcript_75843.known	chr2	+	2437	4	FSM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	4.10960933531265	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2338	False	NA	NA	False	AATAAA	-42	NA	90735086	90740905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90735254_90736009_90736628_90737888_90737996_90739360
transcript_75844.known	chr2	+	2343	4	FSM	ENSMUSG00000005505.13	ENSMUST00000111464.8	2343	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	29.2726645334669	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2335	False	NA	NA	False	AATAAA	-42	NA	90735083	90740905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90735157_90736009_90736628_90737888_90737996_90739360
transcript_75845.known	chr2	-	1316	4	FSM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_3	26.7332502076846	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGGGACTCCCCTCACA	NA	False	NA	-1	True	AATAAA	-26	NA	90748389	90741056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_90741664_90744327_90744520_90747772_90747854_90747953
transcript_7585.nnic	chr1	+	2146	3	NNC	ENSMUSG00000026604.18	novel	3810	2	NA	NA	-403	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	10	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATTGTTGGATTGTAG	NA	False	NA	2	True	AATAAA	-15	NA	189576836	189584173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_189576951_189578530_189578610_189582220
transcript_75852.nic	chr2	+	3672	15	NIC	ENSMUSG00000005506.17	novel	4830	15	NA	NA	-42	1828	combination_of_known_junctions	FALSE	canonical	3	151	junction_14	215.029720299881	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAGGAAAAAAAAGA	2260	False	NA	NA	False	TTTAAA	-30	NA	90770684	90845545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
transcript_75853.known	chr2	+	4830	15	FSM	ENSMUSG00000005506.17	ENSMUST00000005643.14	4830	15	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_2	185.405677653416	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2317	False	NA	8	True	ATTAAA	-8	NA	90770741	90849835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
transcript_75859.nic	chr2	+	3539	15	NIC	ENSMUSG00000005506.17	novel	4830	15	NA	NA	3	1828	combination_of_known_junctions	FALSE	canonical	3	151	junction_14	222.666585196938	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAGGAAAAAAAAGA	2381	False	NA	NA	False	TTTAAA	-30	NA	90770805	90845545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
transcript_75864.known	chr2	+	7806	15	FSM	ENSMUSG00000005506.17	ENSMUST00000177642.8	7806	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	260.488600949235	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2317	False	NA	8	True	ATTAAA	-8	NA	90770741	90849835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90770987_90784633_90784687_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
transcript_75873.known	chr2	+	7614	14	FSM	ENSMUSG00000005506.17	ENSMUST00000068747.14	7614	14	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_13	169.345415711454	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTCTGCGTTGT	2463	False	NA	15	True	ATTAAA	-15	NA	90770887	90849842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
transcript_75874.known	chr2	+	4678	14	FSM	ENSMUSG00000005506.17	ENSMUST00000111451.10	4678	14	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_7	113.564516501784	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2317	False	NA	8	True	ATTAAA	-8	NA	90770741	90849835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
transcript_7588.nnic	chr1	-	1856	13	NNC	ENSMUSG00000026603.14	novel	1680	12	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	120.514493134874	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	189654607	189612688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_189613064_189613691_189613821_189614305_189614415_189616020_189616196_189617495_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
transcript_75884.nic	chr2	+	3483	14	NIC	ENSMUSG00000005506.17	novel	7614	14	NA	NA	-17	1828	combination_of_known_junctions	FALSE	canonical	3	151	junction_13	182.048826274516	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAGGAAAAAAAAGA	2285	False	NA	NA	False	TTTAAA	-30	NA	90770709	90845545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
transcript_75886.nic	chr2	+	2166	14	NIC	ENSMUSG00000005506.17	novel	4678	14	NA	NA	4	-2435	combination_of_known_junctions	FALSE	canonical	3	280	junction_7	133.754300931789	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGGCTCCTGAACAC	2382	False	NA	NA	False	AATAAA	-27	NA	90770806	90847400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
transcript_75887.nic	chr2	+	4100	14	NIC	ENSMUSG00000005506.17	novel	4678	14	NA	NA	-29	-610	combination_of_known_junctions	FALSE	canonical	3	280	junction_7	133.754300931789	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTACATTTTGGAGACAAA	2273	False	NA	NA	False	AAAAAG	-15	NA	90770697	90849225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
transcript_75889.nic	chr2	+	4700	14	NIC	ENSMUSG00000005506.17	novel	4678	14	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	280	junction_7	133.754300931789	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2283	False	NA	8	True	ATTAAA	-8	NA	90770707	90849835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
transcript_75900.known	chr2	+	7851	13	FSM	ENSMUSG00000005506.17	ENSMUST00000068726.13	7851	13	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_9	166.622056529807	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTCTGCGTTGT	2317	False	NA	15	True	ATTAAA	-15	NA	90770741	90849842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582
transcript_75925.known	chr2	+	1606	8	FSM	ENSMUSG00000002104.12	ENSMUST00000050323.6	1606	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	10.5791477608992	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	7	True	AATAAA	-15	NA	90865985	90876074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
transcript_75927.known	chr2	+	1636	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_1	113.356309451931	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	18	True	AATAAA	-19	NA	90884353	90889777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
transcript_7593.known	chr1	-	1680	12	FSM	ENSMUSG00000026603.14	ENSMUST00000027897.8	1680	12	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_3	24.6985126865085	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	189654560	189612688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_189613064_189614305_189614415_189616020_189616196_189617495_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
transcript_75932.known	chr2	-	2469	10	FSM	ENSMUSG00000002105.16	ENSMUST00000073575.12	2469	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	9.55684745788763	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTTCCACATACTAGG	4167	False	NA	0	True	AATAAA	-15	NA	90900762	90892135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896046_90896357_90896472_90898775_90899085_90900499
transcript_75933.known	chr2	-	1291	10	FSM	ENSMUSG00000002105.16	ENSMUST00000111436.3	1291	10	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	11.8831761976001	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATGAGACTCCAGTCTG	4301	False	NA	NA	False	NA	NA	NA	90900628	90893218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896085_90896357_90896472_90898775_90899085_90900499
transcript_75937.nic	chr2	-	2284	9	NIC	ENSMUSG00000002105.16	novel	2469	10	NA	NA	-36	0	combination_of_known_junctions	TRUE	canonical	1	5	junction_5	17.0105665690476	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTTCCACATACTAGG	4250	False	NA	0	True	AATAAA	-15	NA	90900679	90892135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895926_90896046_90896357_90896472_90898775_90899085_90900499
transcript_75939.nic	chr2	+	509	3	ISM	ENSMUSG00000002102.16	ENSMUST00000152269.8	925	4	-130	899	-44	-517	5prime_fragment	FALSE	canonical	3	1724	junction_1	101.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAGAGAACAGTGAGAAA	NA	False	NA	20	True	NA	NA	NA	90884309	90885381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_90884677_90884919_90885004_90885323
transcript_75940.known	chr2	+	2034	5	FSM	ENSMUSG00000002111.9	ENSMUST00000002180.8	2034	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	7.28010988928052	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAGTGTCTCATTCAAG	8617	False	NA	21	True	AGTAAA	-22	NA	90926440	90946101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_90927339_90929774_90929872_90943599_90943791_90944589_90944756_90945419
transcript_75946.known	chr2	+	4652	11	FSM	ENSMUSG00000002103.17	ENSMUST00000239169.2	4652	11	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_7	11.5134703716994	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTAAAGACTTATTTC	5060	False	NA	7	True	NA	NA	NA	91033256	91044442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91036623_91037061_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
transcript_75951.known	chr2	+	3124	10	FSM	ENSMUSG00000002103.17	ENSMUST00000124131.2	3124	10	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_6	11.063230167017	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCACTGTCTCCAAGATA	5072	False	NA	10	True	AATAAA	-24	NA	91033268	91042487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
transcript_75953.known	chr2	-	1557	10	FSM	ENSMUSG00000002109.15	ENSMUST00000028696.5	1557	10	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_8	17.7888854188351	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAGGGTTGGAGCAGGG	2997	False	NA	NA	False	NA	NA	NA	91067327	91042200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
transcript_75955.known	chr2	-	2228	9	FSM	ENSMUSG00000002109.15	ENSMUST00000111352.8	2228	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	15.7594217850783	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCCTTTGTATCTAACTA	3094	False	NA	-57	True	AATAAA	-4	NA	91067230	91041947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065297_91067034
transcript_75959.known	chr2	+	1862	11	FSM	ENSMUSG00000027257.14	ENSMUST00000028694.12	1862	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	20.1345474247622	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCGTCTTTTGATAGC	4750	False	NA	19	True	AATAAA	-16	NA	91087157	91095023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91087272_91090208_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
transcript_7596.nnic	chr1	-	1680	11	NIC	ENSMUSG00000026603.14	novel	1680	12	NA	NA	-111	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_9	98.4024898058987	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	189654671	189612688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_189613064_189614305_189614415_189616020_189616196_189617495_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189642047_189642112_189654303
transcript_75960.known	chr2	+	1859	11	FSM	ENSMUSG00000027257.14	ENSMUST00000168916.8	1859	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	24.287651183266	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGTCTTTTGATAGCC	4750	False	NA	20	True	AATAAA	-17	NA	91087157	91095024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91087272_91090212_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
transcript_75963.nic	chr2	+	1798	10	NIC	ENSMUSG00000027257.14	novel	1862	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	17.8519286920123	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCGTCTTTTGATAGC	4750	False	NA	19	True	AATAAA	-16	NA	91087157	91095023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_91087272_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
transcript_75966.known	chr2	-	1977	9	FSM	ENSMUSG00000040591.19	ENSMUST00000102594.11	1977	9	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_5	19.7673974007708	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGACTGCCTGCTCCAAG	NA	False	NA	NA	False	AATAAA	-14	NA	91274987	91108174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
transcript_75970.known	chr2	-	307	3	FSM	ENSMUSG00000040591.19	ENSMUST00000139490.8	307	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	64	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTTCTTTTTTCTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	91274982	91249128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91249264_91252210_91252314_91274913
transcript_75973.known	chr2	+	3068	16	FSM	ENSMUSG00000027255.15	ENSMUST00000080008.13	3068	16	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	19.1619994317457	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCCTCTCCGTCCTGCCT	5502	False	NA	NA	False	AATAAA	-25	NA	91095318	91107276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
transcript_7598.nic	chr1	-	2997	11	NIC	ENSMUSG00000026603.14	novel	1680	12	NA	NA	-17	0	intron_retention	FALSE	canonical	3	299	junction_6	22.8613210466937	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	189654577	189612688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_189613064_189614305_189614415_189616020_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
transcript_75992.known	chr2	+	520	3	FSM	ENSMUSG00000027255.15	ENSMUST00000150701.8	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_2	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAGAAAAAAAAAAG	5852	False	NA	NA	False	NA	NA	NA	91095668	91096890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91095750_91095916_91096036_91096570
transcript_75996.nic	chr2	+	2615	13	ISM	ENSMUSG00000027253.16	ENSMUST00000028689.4	7926	38	-103	34488	-103	4	5prime_fragment	FALSE	canonical	3	17	junction_6	4.83907704698599	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAACTGCCTAGTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	91287752	91309636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_91288098_91301473_91301621_91303501_91303619_91303902_91304017_91304252_91304370_91304692_91304822_91305050_91305171_91305527_91305654_91306610_91306737_91306928_91307064_91307442_91307569_91307865_91308097_91308854
transcript_75998.known	chr2	+	3266	12	FSM	ENSMUSG00000027253.16	ENSMUST00000143874.8	3266	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	4.85151420513685	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTGAACTGCCTAGT	NA	False	NA	NA	False	AATAAA	-14	NA	91287855	91309632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91288098_91301473_91301621_91303501_91303619_91303902_91304017_91304252_91304370_91304692_91304822_91305050_91305171_91305527_91305654_91306610_91306737_91306928_91307064_91307442_91307569_91307865
transcript_760.known	chr1	+	4322	8	FSM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	0	0	0	0	multi-exon	FALSE	canonical	2	71	junction_6	20.1190335305671	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTGTGTGTGGTGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	33758975	33781645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
transcript_76000.known	chr2	+	6665	44	FSM	ENSMUSG00000040549.17	ENSMUST00000111338.10	6665	44	0	0	0	0	multi-exon	TRUE	canonical	3	508	junction_5	59.4884084586321	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATTTCCCAAAATGCTC	NA	False	NA	11	True	AATAAA	-16	NA	91357106	91451009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91357196_91376666_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317_91403413_91406360_91406419_91406507_91406634_91407908_91408049_91408379_91408555_91409767_91409882_91411454_91411584_91416066_91416262_91416582_91416719_91419013_91419103_91422010_91422137_91425027_91425178_91425655_91425860_91426032_91426169_91426706_91426901_91429550_91429724_91430985_91431160_91431350_91431472_91436590_91436771_91437789_91437978_91443084_91443161_91445317_91445507_91445586_91445725_91446138_91446223_91446645_91446806_91450032_91450185_91450326
transcript_76005.nic	chr2	-	2024	13	ISM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	340	0	321	0	3prime_fragment	FALSE	canonical	2	10	junction_12	3.05845821725043	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCAGTGTGCCCAATGC	NA	False	NA	NA	False	AATAAA	-15	NA	91466419	91455664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515_91465541_91466122
transcript_76009.known	chr2	-	1988	14	FSM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	5.12333101702976	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCAGTGTGCCCAATGC	NA	False	NA	NA	False	AATAAA	-15	NA	91466759	91455664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515_91465541_91466122_91466287_91466662
transcript_76012.known	chr2	-	3469	5	FSM	ENSMUSG00000075040.10	ENSMUST00000099714.10	3469	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_4	8.1967981553775	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTGTGGCCACTTGCAT	NA	False	NA	NA	False	NA	NA	NA	91480124	91474013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91476819_91477940_91478192_91478360_91478423_91479495_91479771_91480048
transcript_76016.known	chr2	-	3740	4	FSM	ENSMUSG00000075040.10	ENSMUST00000111333.2	3740	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	6.54896090146283	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGACAAAAG	NA	False	NA	NA	False	NA	NA	NA	91480136	91474032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91476819_91477940_91478192_91478360_91478423_91479495
transcript_76020.nnic	chr2	+	3086	15	NNC	ENSMUSG00000027247.17	novel	3201	14	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	121.546833167554	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480490	91502671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_91480598_91481843_91482000_91482093_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_76022.nnic	chr2	+	3071	15	NNC	ENSMUSG00000027247.17	novel	3201	14	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	118.35093526268	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480490	91502671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_91480598_91481843_91482000_91482108_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_76023.known	chr2	+	2866	14	FSM	ENSMUSG00000027247.17	ENSMUST00000090614.11	2866	14	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_2	93.668116113923	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480566	91502671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91480598_91482108_91482169_91484390_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_76025.known	chr2	+	3201	14	FSM	ENSMUSG00000027247.17	ENSMUST00000111329.8	3201	14	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	49.9501526672271	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480204	91502671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91480598_91482108_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_76031.known	chr2	+	2883	13	FSM	ENSMUSG00000027247.17	ENSMUST00000111331.9	2883	13	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	81.5357368819887	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480462	91502671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91480598_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_76037.nnic	chr2	-	3608	17	NNC	ENSMUSG00000027244.15	novel	3604	17	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	79.205207175728	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCCTATTCCAAATGTC	NA	False	NA	-1	True	AATAAA	-19	NA	91540895	91504963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512455_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
transcript_76038.known	chr2	-	3604	17	FSM	ENSMUSG00000027244.15	ENSMUST00000028678.9	3604	17	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	76.9829526583646	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCCTATTCCAAATGTC	NA	False	NA	-1	True	AATAAA	-19	NA	91540864	91504963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512482_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
transcript_7604.nic	chr1	-	1256	9	ISM	ENSMUSG00000026603.14	ENSMUST00000027897.8	1680	12	-125	4697	-125	-143	5prime_fragment	FALSE	canonical	3	299	junction_4	18.6543393075177	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTCCTGTGTGCTCG	NA	False	NA	NA	False	AGTAAA	-14	NA	189654685	189617385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
transcript_76049.nic	chr2	-	3499	16	NIC	ENSMUSG00000027244.15	novel	3604	17	NA	NA	-125	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_15	61.7638513479635	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCCTATTCCAAATGTC	NA	False	NA	-1	True	AATAAA	-19	NA	91536204	91504963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91535925
transcript_76050.known	chr2	-	3551	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	0	0	0	0	multi-exon	TRUE	canonical	3	217	junction_4	20.2170445141937	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCCTATTCCAAATGTCT	NA	False	NA	0	True	AATAAA	-20	NA	91540921	91504962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
transcript_76062.nic	chr2	-	3695	15	NIC	ENSMUSG00000027244.15	novel	3604	17	NA	NA	-223	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	59.708176379208	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCCTATTCCAAATGTC	NA	False	NA	-1	True	AATAAA	-19	NA	91541144	91504963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
transcript_76076.known	chr2	+	2308	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	26	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3442	False	NA	NA	False	NA	NA	NA	91541266	91551890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91541597_91542424_91543211_91550698
transcript_76077.nic	chr2	+	2117	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3357	False	NA	NA	False	NA	NA	NA	91541181	91551890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_91541321_91542424_91543211_91550698
transcript_76079.nic	chr2	+	2207	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3357	False	NA	NA	False	NA	NA	NA	91541181	91551890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_91541411_91542424_91543211_91550698
transcript_76080.known	chr2	+	5021	19	FSM	ENSMUSG00000040506.17	ENSMUST00000099712.10	5021	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	21.1640418320005	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGCTCCTGCTTATTTCT	NA	False	NA	7	True	ATTAAA	-19	NA	91560478	91749194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91602783_91603055_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
transcript_76083.known	chr2	+	4929	18	FSM	ENSMUSG00000040506.17	ENSMUST00000111317.9	4929	18	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_8	30.449799858434	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTCCTGCTTATTTC	NA	False	NA	6	True	ATTAAA	-18	NA	91560482	91749193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91602783_91603055_91604093_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
transcript_76084.known	chr2	+	5203	18	FSM	ENSMUSG00000040506.17	ENSMUST00000045705.14	5203	18	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_5	14.4832560525026	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGCTCCTGCTTATTTCT	NA	False	NA	7	True	ATTAAA	-19	NA	91560569	91749194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
transcript_76088.nnic	chr2	+	3008	2	Genic_Genomic	ENSMUSG00000040495.5	novel	1440	1	NA	NA	-5294	1147	multi-exon	FALSE	canonical	1	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTTATTTTATTCATT	NA	False	NA	NA	False	ATTAAA	-24	NA	91752299	91760180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr2_+_91752689_91757561
transcript_76089.known	chr2	-	714	5	FSM	ENSMUSG00000027239.15	ENSMUST00000090602.6	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_4	939.630878324036	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTCACGCCCACACCAAG	NA	False	NA	NA	False	NA	NA	NA	91762044	91760310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761878
transcript_7609.known	chr1	-	7913	5	FSM	ENSMUSG00000010175.14	ENSMUST00000175916.8	7913	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCATTCTTTTGTTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	189902911	189850231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_189855603_189879148_189879344_189885612_189885721_189892718_189894511_189902464
transcript_76090.known	chr2	-	771	5	FSM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	1107.84859073792	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGCCCCTTCCCAGTT	NA	False	NA	NA	False	AATAAA	-42	NA	91762033	91760149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761971
transcript_76091.known	chr2	-	773	5	FSM	ENSMUSG00000027239.15	ENSMUST00000069423.13	773	5	0	0	0	0	multi-exon	FALSE	canonical	3	1617	junction_4	477.436121381699	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762125	91760172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762038
transcript_76092.known	chr2	-	1054	5	FSM	ENSMUSG00000027239.15	ENSMUST00000028672.13	1054	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	1100.19691419309	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762642	91760172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762274
transcript_76100.known	chr2	-	4169	32	FSM	ENSMUSG00000040479.13	ENSMUST00000111303.2	4169	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_31	70.9146575656139	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTGTTTTCTTTTTTT	NA	False	NA	-6	True	AGTAAA	-15	NA	91780772	91763171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91775518_91776270_91780565
transcript_76106.known	chr2	-	3584	31	FSM	ENSMUSG00000040479.13	ENSMUST00000028667.10	3584	31	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_9	28.4788615565222	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTTTCTTTTTTTC	NA	False	NA	-5	True	AGTAAA	-16	NA	91794002	91763170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91793630
transcript_76107.known	chr2	-	3393	31	FSM	ENSMUSG00000040479.13	ENSMUST00000239257.2	3393	31	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_30	54.3341104238908	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTTTCTTTTTTTC	NA	False	NA	-5	True	AGTAAA	-16	NA	91795945	91763170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91795764
transcript_76108.known	chr2	-	3512	31	FSM	ENSMUSG00000040479.13	ENSMUST00000099709.10	3512	31	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_30	51.2884652399218	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTTTCTTTTTTTCTT	NA	False	NA	-3	True	AGTAAA	-18	NA	91806209	91763168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91805911
transcript_7611.known	chr1	-	3995	15	FSM	ENSMUSG00000089872.11	ENSMUST00000061611.15	3995	15	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	6.52154983457904	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTTCCTCATTTAATA	NA	False	NA	0	True	AATAAA	-16	NA	190643967	190505075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190566202_190566296_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
transcript_76115.nnic	chr2	-	3724	31	NNC	ENSMUSG00000040479.13	novel	3584	31	NA	NA	-102	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	54.0594323150199	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTGTTTTCTTTTTTT	NA	False	NA	-6	True	AGTAAA	-15	NA	91794104	91763171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765244_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91793630
transcript_76124.nic	chr2	-	3824	30	NIC	ENSMUSG00000040479.13	novel	3584	31	NA	NA	-28	0	intron_retention	FALSE	canonical	3	212	junction_8	27.723365918227	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTGTTTTCTTTTTTT	NA	False	NA	-6	True	AGTAAA	-15	NA	91794030	91763171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_91763871_91764087_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91793630
transcript_76138.known	chr2	-	3109	28	FSM	ENSMUSG00000040479.13	ENSMUST00000142231.8	3109	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_27	57.6209409807422	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTGTTTTCTTTTTTT	NA	False	NA	-6	True	AGTAAA	-15	NA	91795945	91763171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91795764
transcript_76139.known	chr2	-	2603	12	FSM	ENSMUSG00000027230.10	ENSMUST00000028663.5	2603	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_10	5.08603662934522	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGACTCTGTGTGTCCTT	NA	False	NA	NA	False	ATTAAA	-25	NA	91854847	91812672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_91813353_91813509_91813778_91816505_91816633_91817380_91817481_91821051_91821121_91821253_91821313_91821470_91821621_91822231_91822390_91823615_91823695_91825601_91825787_91832189_91832419_91854348
transcript_7614.nic	chr1	-	3929	14	NIC	ENSMUSG00000089872.11	novel	3995	15	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_7	11.9782840983518	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTTCCTCATTTAATA	NA	False	NA	0	True	AATAAA	-16	NA	190643994	190505075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
transcript_76148.known	chr2	+	3900	19	FSM	ENSMUSG00000058318.16	ENSMUST00000111293.9	3900	19	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	5.58022301426107	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGTGTAGTGACAGTTTT	NA	False	NA	8	True	ATTAAA	-23	NA	92014519	92192180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_92014698_92044393_92044435_92045808_92045921_92051816_92051961_92058793_92058827_92061003_92061070_92150573_92150805_92157257_92157510_92158656_92158747_92160859_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92182045_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
transcript_76162.known	chr2	-	2621	15	FSM	ENSMUSG00000040434.17	ENSMUST00000148352.8	2621	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	43.6898274247926	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATGTGTGAGTGTTTTG	NA	False	NA	-5	True	GGGGCT	-43	NA	92201363	92195395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200690_92201009_92201083_92201239_92201325
transcript_76163.known	chr2	-	2377	15	FSM	ENSMUSG00000040434.17	ENSMUST00000176774.8	2377	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	41.8854731039636	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	0	True	NA	NA	NA	92201331	92195390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200907_92201009_92201083_92201239_92201325
transcript_76165.known	chr2	-	2310	14	FSM	ENSMUSG00000040434.17	ENSMUST00000176289.8	2310	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	44.6240044723457	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTATGTGTGAGTGTTTT	NA	False	NA	-6	True	GGGGCT	-42	NA	92201356	92195396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200910_92201009_92201083_92201239_92201325
transcript_76167.nic	chr2	-	2692	14	NIC	ENSMUSG00000040434.17	novel	2445	15	NA	NA	-55	0	intron_retention	FALSE	canonical	3	78	junction_9	20.7327314612946	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTATGTGTGAGTGTTTT	NA	False	NA	-6	True	GGGGCT	-42	NA	92201457	92195396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
transcript_76172.known	chr2	-	2291	14	FSM	ENSMUSG00000040434.17	ENSMUST00000090582.11	2291	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	42.5506311706155	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTTCAATTTTTTTTA	NA	False	NA	-25	True	GGGGCT	-23	NA	92201378	92195415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
transcript_76188.known	chr2	+	1167	11	FSM	ENSMUSG00000027222.15	ENSMUST00000155891.8	1167	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	67.8416538713496	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATGTGGCTCTGTGTCAT	NA	False	NA	20	True	AATAAA	-20	NA	92205020	92211561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_92205167_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
transcript_76189.known	chr2	+	1392	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	21	True	AATAAA	-21	NA	92205650	92211562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
transcript_76199.known	chr2	-	2930	12	FSM	ENSMUSG00000027223.16	ENSMUST00000050312.3	2930	12	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_10	15.2158030073021	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATCAGAGTGGGTGTA	NA	False	NA	-10	True	ATTAAA	-14	NA	92231608	92214024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92214767_92215068_92215168_92215268_92215340_92215491_92215609_92215757_92215868_92216139_92216313_92216707_92216784_92216915_92217729_92217898_92217981_92219319_92219626_92221380_92221487_92231373
transcript_76204.known	chr2	-	3976	12	FSM	ENSMUSG00000068742.12	ENSMUST00000090559.12	3976	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	10.1019595513375	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTGTGTAATCTATCT	NA	False	NA	NA	False	AGTAAA	-2	NA	92264388	92233990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92236166_92241970_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246_92257356_92264156
transcript_76206.known	chr2	-	2160	11	FSM	ENSMUSG00000068742.12	ENSMUST00000111278.2	2160	11	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_4	10.4446158378372	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAATGTAAA	NA	False	NA	NA	False	NA	NA	NA	92264381	92241604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246_92257356_92264156
transcript_76211.known	chr2	-	2082	2	FSM	ENSMUSG00000068742.12	ENSMUST00000125488.2	2082	2	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCTGTGGAAACCATTA	NA	False	NA	NA	False	NA	NA	NA	92264381	92255498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92257356_92264156
transcript_76213.known	chr2	-	2668	3	FSM	ENSMUSG00000049922.9	ENSMUST00000125276.2	2668	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	25.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGATACAGCATGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	92290883	92283111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92285120_92289011_92289536_92290747
transcript_76214.known	chr2	-	3139	2	FSM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATACAGCATGTTTTAT	NA	False	NA	NA	False	AATAAA	-24	NA	92290139	92283108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_92285120_92289011
transcript_76215.known	chr2	+	2680	3	FSM	ENSMUSG00000027221.6	ENSMUST00000065797.7	2680	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGTGTGATTTGGGGGA	7175	False	NA	NA	False	AATAAA	-15	NA	92430051	92445595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_92430494_92442038_92442169_92443487
transcript_76216.known	chr2	+	3761	6	FSM	ENSMUSG00000027220.3	ENSMUST00000028648.3	3761	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.85472369909914	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGGCTCTAACTAACTT	NA	False	NA	NA	False	NA	NA	NA	92745442	92786403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_92745715_92771097_92771324_92773396_92773532_92776258_92776561_92781646_92781777_92783707
transcript_76222.nic	chr2	+	2812	9	NIC	ENSMUSG00000068735.15	novel	2654	8	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	126.560015407711	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGTGGTGTCCTGTTTT	NA	False	NA	18	True	NA	NA	NA	93017913	93032102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_93018093_93019433_93019569_93027241_93027324_93027956_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
transcript_76223.nnic	chr2	+	2894	8	NIC	ENSMUSG00000068735.15	novel	2703	8	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	3	62	junction_2	86.7591082085498	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGTGGTGTCCTGTTTT	NA	False	NA	18	True	NA	NA	NA	93017846	93032102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_93018093_93027241_93027324_93027806_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
transcript_76225.known	chr2	+	2654	8	FSM	ENSMUSG00000068735.15	ENSMUST00000090554.11	2654	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	50.0424309757148	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACAATCTGCGTGGTGT	NA	False	NA	10	True	AAGAAA	-43	NA	93017928	93032094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_93018093_93027241_93027324_93027956_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
transcript_76229.known	chr2	-	3751	10	FSM	ENSMUSG00000027217.14	ENSMUST00000111265.9	3751	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	5.53774924194538	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTTTCTCATTGGTTGT	NA	False	NA	-11	True	TATAAA	-16	NA	93164832	93032104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93034768_93036044_93036129_93040138_93040322_93041168_93041268_93042162_93042238_93050363_93050559_93053056_93053130_93054841_93054924_93142291_93142373_93164616
transcript_76230.known	chr2	-	674	3	FSM	ENSMUSG00000027217.14	ENSMUST00000152141.2	674	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	26	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTGCCTGTGTGAGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	93164850	93141607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93141967_93142291_93142373_93164616
transcript_76231.known	chr2	-	1824	10	FSM	ENSMUSG00000027215.14	ENSMUST00000028644.11	1824	10	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_8	1.4229164972073	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCTGAAGAGGCGGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	93292847	93249455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93292674
transcript_76233.nic	chr2	-	3076	16	NIC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	164.700725222717	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652926	93525975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93650374_93650495_93651954_93652027_93652731
transcript_76239.nic	chr2	-	3007	15	NIC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	155.373562350713	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652929	93525975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93650374_93650495_93652731
transcript_76240.nic	chr2	-	2956	15	NIC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	84	junction_13	124.260444885995	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652926	93525975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93651954_93652027_93652731
transcript_76244.known	chr2	-	2871	14	FSM	ENSMUSG00000027198.17	ENSMUST00000028623.13	2871	14	0	0	0	0	multi-exon	TRUE	canonical	3	390	junction_9	31.3157237855525	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652913	93525975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93652731
transcript_76253.nnic	chr2	-	2817	13	NIC	ENSMUSG00000027198.17	novel	2871	14	NA	NA	-31	-2	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	114.321519068906	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCTGTCTAGAATGCTG	NA	False	NA	-13	True	ATTAAA	-17	NA	93652944	93525977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_93526617_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93652731
transcript_76266.known	chr2	-	2036	15	FSM	ENSMUSG00000040272.15	ENSMUST00000041593.15	2036	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	6.99599010512597	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTCTTCATTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	93680144	93665782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678532_93679889
transcript_76267.known	chr2	-	3950	15	FSM	ENSMUSG00000040272.15	ENSMUST00000111246.8	3950	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_14	5.46230122694433	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTGTCATTGCTATGT	NA	False	NA	NA	False	NA	NA	NA	93680286	93663811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678553_93680109
transcript_76280.nic	chr2	-	3123	15	NIC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-317	0	intron_retention	FALSE	canonical	1	2	junction_14	23.4539279161056	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93699819	93685706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93698783
transcript_76281.known	chr2	-	2224	15	FSM	ENSMUSG00000075023.12	ENSMUST00000099690.4	2224	15	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_14	17.5243271145093	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGGCCTGCTTTATTTC	NA	False	NA	0	True	AATAAA	-23	NA	93699502	93685705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93699366
transcript_76283.nnic	chr2	-	2381	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61402	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_14	11.1785143768512	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93760904	93685706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
transcript_76285.nnic	chr2	-	2579	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61402	-2	intron_retention	FALSE	canonical	2	7	junction_1	23.1600465263358	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCAGGCCTGCTTTAT	NA	False	NA	-3	True	AATAAA	-20	NA	93760904	93685708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_93686326_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
transcript_76294.nic	chr2	-	1451	11	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	43.1723291009415	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8798	False	NA	-7	True	ATTAAA	-20	NA	93841152	93810981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
transcript_76296.known	chr2	-	1228	10	FSM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	32.7210431781547	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8875	False	NA	-7	True	ATTAAA	-20	NA	93841075	93810981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
transcript_76300.nic	chr2	-	1163	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	40.6799628195504	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8851	False	NA	-7	True	ATTAAA	-20	NA	93841099	93810981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
transcript_76306.known	chr2	-	1386	1	FSM	ENSMUSG00000087006.4	ENSMUST00000099689.5	1386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCACTTCTCCGGGCTTT	NA	False	NA	-9	True	AATAAA	-17	NA	93787546	93786160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93786200_93787500
transcript_76308.known	chr2	-	1902	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_5	45.0653969249135	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATTTTTGATAGTGGAA	NA	False	NA	NA	False	AATAAA	-31	NA	93988309	93863033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
transcript_76309.known	chr2	-	1758	10	FSM	ENSMUSG00000027195.11	ENSMUST00000127084.8	1758	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	235.021879727436	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTGAAATGAAAGTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	93988254	93863046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93947774_93947822_93988054
transcript_76313.known	chr2	-	727	3	FSM	ENSMUSG00000027195.11	ENSMUST00000141955.2	727	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	338	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAATTAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	93988238	93944920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_93945414_93947774_93947825_93988054
transcript_76314.known	chr2	-	4590	25	FSM	ENSMUSG00000027194.17	ENSMUST00000111238.8	4590	25	0	0	0	0	multi-exon	TRUE	canonical	3	116	junction_1	40.2833497103814	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCGTGGTGTAGTTTTTC	NA	False	NA	-2	True	AATAAA	-21	NA	94237034	94131111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
transcript_76317.known	chr2	-	3408	20	FSM	ENSMUSG00000027194.17	ENSMUST00000094801.5	3408	20	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	34.6292592408193	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTTTTAAATATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	94237033	94158281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_94158831_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
transcript_76323.known	chr2	-	3736	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	332	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGATATTAGCATTTATT	NA	False	NA	44	True	NA	NA	NA	94268481	94242026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
transcript_7633.known	chr1	+	3714	9	FSM	ENSMUSG00000026634.17	ENSMUST00000066632.14	3714	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	32.0263563334951	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGGACAGAGAAGTT	NA	False	NA	16	True	AATAAA	-18	NA	190660688	190679159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_76332.known	chr2	+	2040	2	FSM	ENSMUSG00000045464.6	ENSMUST00000152313.2	2040	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAGAATCCTAAGTTATA	NA	False	NA	NA	False	AATAAA	-16	NA	94236495	94242027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_94237312_94240803
transcript_76337.known	chr2	-	2273	7	FSM	ENSMUSG00000027165.17	ENSMUST00000111231.10	2273	7	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_5	14.4299072146089	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATACACTTCTCCTTATT	NA	False	NA	NA	False	NA	NA	NA	101459335	101391125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_101392700_101406356_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101440868_101441021_101459225
transcript_76338.known	chr2	-	1458	2	FSM	ENSMUSG00000027165.17	ENSMUST00000177007.2	1458	2	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGGAAAATGGACTTTGA	NA	False	NA	NA	False	AATAAA	-28	NA	101459354	101439691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_101441021_101459225
transcript_76341.known	chr2	+	6169	8	FSM	ENSMUSG00000027164.9	ENSMUST00000004949.8	6169	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	13.2603444409969	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTGCTGGTTATGTAGAAT	NA	False	NA	NA	False	TATAAA	-14	NA	101508784	101532014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_101508966_101511169_101511373_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
transcript_76345.nic	chr2	+	2236	7	NIC	ENSMUSG00000027164.9	novel	6169	8	NA	NA	-17	-3758	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8426555195142	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGTGCTGGTGCC	NA	False	NA	NA	False	ATTAAA	-12	NA	101508756	101528256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_101508966_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
transcript_76346.nic	chr2	+	2776	7	NIC	ENSMUSG00000027164.9	novel	6169	8	NA	NA	-17	-3218	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8426555195142	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTTGGAGAATTGGCTCA	NA	False	NA	NA	False	AATAAA	-16	NA	101508756	101528796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_101508966_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
transcript_76347.nic	chr2	+	2937	7	NIC	ENSMUSG00000027164.9	novel	6169	8	NA	NA	-17	-3057	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8426555195142	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATTTCCTCAAAACAGAA	NA	False	NA	NA	False	AATAAA	-9	NA	101508756	101528957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_101508966_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
transcript_76349.known	chr2	-	2290	9	FSM	ENSMUSG00000032841.16	ENSMUST00000043845.14	2290	9	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_4	1.6583123951777	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTCATTTCCAGTGAG	977	False	NA	NA	False	AAAAAG	-30	NA	101628053	101546585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_101547812_101559768_101559896_101564949_101565091_101571631_101571724_101577070_101577129_101588854_101588904_101601279_101601361_101602474_101602754_101627816
transcript_76352.known	chr2	+	1191	6	FSM	ENSMUSG00000027163.14	ENSMUST00000028584.8	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	9.72830920561225	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCTGGTCGTGGTTCTT	NA	False	NA	29	True	AATAAA	-25	NA	101716597	101731991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272
transcript_76355.known	chr2	-	3833	6	FSM	ENSMUSG00000048058.18	ENSMUST00000058790.12	3833	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	7.56306816047562	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCGTGTGAATGGTTCT	NA	False	NA	-2	True	AATAAA	-18	NA	102016730	101780547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943877_101944025_102016624
transcript_76356.known	chr2	-	3710	6	FSM	ENSMUSG00000048058.18	ENSMUST00000111222.2	3710	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	25.560907652116	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCGTGTGAATGGTTCT	NA	False	NA	-2	True	AATAAA	-18	NA	102016703	101780547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943973_101944025_102016624
transcript_76358.known	chr2	-	5612	5	FSM	ENSMUSG00000027189.17	ENSMUST00000102573.8	5612	5	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	8.0156097709407	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTCTCAGAGTTGTTC	NA	False	NA	0	True	AATAAA	-19	NA	102231245	102130463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_102134850_102177308_102177329_102187761_102188002_102211208_102211287_102230357
transcript_7636.known	chr1	+	3673	9	FSM	ENSMUSG00000026634.17	ENSMUST00000110899.7	3673	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	60.2136820000239	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGGACAGAGAAGTT	NA	False	NA	16	True	AATAAA	-18	NA	190660688	190679159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_190660915_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_76360.known	chr2	-	3134	1	FSM	ENSMUSG00000075012.5	ENSMUST00000099678.5	3134	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGAGGTTTGATTTGAT	NA	False	NA	NA	False	AATAAA	-26	NA	102282844	102279710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_102279700_102282800
transcript_76361.known	chr2	-	2848	9	FSM	ENSMUSG00000005087.18	ENSMUST00000099673.9	2848	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.85695682505013	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAAAAAGGA	7992	False	NA	NA	False	ACTAAA	-38	NA	102731855	102642891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_102644683_102652552_102652632_102654605_102654678_102658886_102658956_102683359_102683582_102686243_102686313_102691904_102692042_102695625_102695792_102731612
transcript_76368.known	chr2	-	2506	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGATATGACATGCAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	102903858	102851419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
transcript_76377.known	chr2	-	2078	5	FSM	ENSMUSG00000010914.11	ENSMUST00000111183.2	2078	5	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	7.44983221287567	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCCCTGTCTGTTATCT	NA	False	NA	NA	False	AATAAA	-25	NA	102903807	102869963	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
transcript_76380.nnic	chr2	+	877	7	NNC	ENSMUSG00000010911.13	novel	919	7	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	133.735331490556	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGAAATTTTCTTGA	4593	False	NA	22	True	AATAAA	-44	NA	102904019	102922986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922223_102922809
transcript_76381.known	chr2	+	919	7	FSM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_6	40.9691618442729	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAAATTTTCTTGATGT	4593	False	NA	25	True	AATAAA	-21	NA	102904019	102922989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
transcript_76383.nic	chr2	+	1532	6	ISM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	-68	3	-68	3	intron_retention	FALSE	canonical	3	333	junction_2	37.3363094051889	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGAAATTTTCTTGA	4525	False	NA	22	True	AATAAA	-44	NA	102903951	102922986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093
transcript_76384.known	chr2	+	837	6	FSM	ENSMUSG00000010911.13	ENSMUST00000124540.8	837	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	142.218704817615	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTTAAATGAGTTGGAA	4613	False	NA	12	True	AATAAA	-34	NA	102904039	102922976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_102904187_102913299_102913401_102918905_102919024_102919747_102919884_102922093_102922262_102922809
transcript_76391.known	chr2	-	2613	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	777	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTGACTTTGGAGGTTC	NA	False	NA	NA	False	NA	NA	NA	103315505	103284193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
transcript_76397.known	chr2	+	4558	17	FSM	ENSMUSG00000032724.6	ENSMUST00000076212.4	4558	17	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_9	4.07546009672528	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGGCATCTGCTCCTGG	NA	False	NA	2	True	AATAAA	-16	NA	103396654	103548768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103397955_103509089_103509237_103513622_103513837_103531115_103531269_103532600_103532767_103535397_103535488_103535975_103536078_103537921_103538019_103538424_103538561_103539624_103539852_103541020_103541200_103541492_103541599_103541789_103541893_103542731_103542823_103545847_103545917_103546384_103546499_103547504
transcript_7640.nic	chr1	+	2372	9	NIC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	-8	-1166	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	46.1652940530005	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAAGTCCTTTATATATG	NA	False	NA	NA	False	NA	NA	NA	190661010	190677993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_190661102_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_76405.known	chr2	-	3879	29	FSM	ENSMUSG00000027185.16	ENSMUST00000028608.13	3879	29	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_25	29.5459474413003	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCCTGCAGTGCCTATAA	NA	False	NA	-9	True	AATAAA	-20	NA	103591615	103551600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
transcript_7641.nic	chr1	+	3072	9	NIC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	-8	-466	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	46.1652940530005	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACTCATTTATTCCAG	NA	False	NA	16	True	AATAAA	-16	NA	190661010	190678693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_190661102_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_76416.nic	chr2	-	3245	28	ISM	ENSMUSG00000027185.16	ENSMUST00000028608.13	3879	29	-39	2936	-39	0	5prime_fragment	FALSE	canonical	3	271	junction_24	29.7193087299395	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGAGGGCCTGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	103591654	103554536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
transcript_76423.known	chr2	-	3497	27	FSM	ENSMUSG00000027185.16	ENSMUST00000144590.9	3497	27	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_23	29.3101149816354	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGAGGGCCTGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	103591549	103554536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
transcript_76429.known	chr2	-	1639	4	FSM	ENSMUSG00000027185.16	ENSMUST00000127581.8	1639	4	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	12.4721912892465	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103591606	103583364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_103584576_103587513_103587606_103588015_103588139_103591393
transcript_7643.nnic	chr1	+	2709	9	NNC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	-3	-1166	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	58.9888760699846	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAAGTCCTTTATATATG	NA	False	NA	NA	False	NA	NA	NA	190661015	190677993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_190661444_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_76430.known	chr2	-	432	3	FSM	ENSMUSG00000027185.16	ENSMUST00000165970.2	432	3	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTGCGTCTTCTTTCAG	NA	False	NA	NA	False	NA	NA	NA	103591540	103587443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_103587606_103588015_103588139_103591393
transcript_76440.known	chr2	-	6169	19	FSM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_18	276.654863648277	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCAGTGTTTAGAACAAAA	NA	False	NA	NA	False	AATAAA	-23	NA	103627994	103593285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
transcript_76452.known	chr2	-	4069	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	1010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTCATGTGTGGTTAT	NA	False	NA	-11	True	AATAAA	-17	NA	103627449	103595362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
transcript_76462.nic	chr2	-	3609	18	ISM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	-64	4166	-64	0	5prime_fragment	FALSE	canonical	3	761	junction_17	279.160307903274	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	NA	False	NA	-9	True	NA	NA	NA	103628058	103597451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
transcript_76468.nic	chr2	-	3576	17	ISM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	-54	2089	-54	0	5prime_fragment	FALSE	canonical	3	1726	junction_3	108.266742354243	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	NA	False	NA	-9	True	NA	NA	NA	103627503	103597451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
transcript_76485.known	chr2	-	828	3	FSM	ENSMUSG00000027184.15	ENSMUST00000145770.8	828	3	0	0	0	0	multi-exon	FALSE	canonical	3	1788	junction_1	55	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTATTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	103627318	103612865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_103613388_103613487_103613551_103627075
transcript_76486.known	chr2	-	1923	5	FSM	ENSMUSG00000027184.15	ENSMUST00000143349.8	1923	5	0	0	0	0	multi-exon	FALSE	canonical	3	1726	junction_3	119.813135757312	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	2740	False	NA	-9	True	NA	NA	NA	103603126	103597451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013
transcript_76487.nic	chr2	+	2812	11	NIC	ENSMUSG00000027180.13	novel	2628	10	NA	NA	59	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_10	96.8347045227072	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACCCTCTCAACTGTAT	NA	False	NA	0	True	NA	NA	NA	103858124	103887835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103886345
transcript_76488.known	chr2	+	4740	11	FSM	ENSMUSG00000027180.13	ENSMUST00000028603.10	4740	11	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_10	68.8773547691838	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAATGTTGCCCCACCAGA	NA	False	NA	NA	False	AATAAA	-19	NA	103858065	103893585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
transcript_76492.known	chr2	+	3720	10	FSM	ENSMUSG00000027180.13	ENSMUST00000102565.4	3720	10	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_6	33.1058907144937	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTATTTATTTATTT	NA	False	NA	14	True	NA	NA	NA	103858204	103887849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
transcript_76496.known	chr2	+	848	4	FSM	ENSMUSG00000032698.16	ENSMUST00000123437.8	848	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.85861230093008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAGAGTCCCAGGCACC	3880	False	NA	NA	False	NA	NA	NA	103799872	103811437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103800067_103800837_103801058_103806349_103806566_103811219
transcript_7650.nic	chr1	+	2200	8	NIC	ENSMUSG00000026634.17	novel	3714	9	NA	NA	22	-1166	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	62.1285697861577	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAAGTCCTTTATATATG	NA	False	NA	NA	False	NA	NA	NA	190660710	190677993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_190660956_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_76500.known	chr2	+	1654	4	FSM	ENSMUSG00000032698.16	ENSMUST00000111143.8	1654	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	5.71547606649408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAATGACAAGCTGAAAT	4481	False	NA	NA	False	ATTAAA	-27	NA	103800473	103812200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103800711_103800837_103801058_103806349_103806566_103811219
transcript_76502.known	chr2	+	1706	3	FSM	ENSMUSG00000032698.16	ENSMUST00000111140.3	1706	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTGCTGTTCTTGATGT	4575	False	NA	NA	False	AATAAA	-16	NA	103800567	103812219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103801058_103806349_103806566_103811219
transcript_76503.known	chr2	+	555	5	FSM	ENSMUSG00000068686.13	ENSMUST00000111131.9	555	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	30.2933573576783	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACAATAAAATTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	103900193	103921505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103920473_103920620_103921348
transcript_76504.known	chr2	+	434	4	FSM	ENSMUSG00000068686.13	ENSMUST00000129749.8	434	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	22.7596133534821	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCATCCTGGATGCCCC	NA	False	NA	NA	False	NA	NA	NA	103900235	103914990	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103914766
transcript_76506.known	chr2	+	436	4	FSM	ENSMUSG00000068686.13	ENSMUST00000111132.8	436	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	23.6690139681023	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	103900193	103921532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103921348
transcript_76515.known	chr2	+	681	5	FSM	ENSMUSG00000032679.13	ENSMUST00000153312.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	94.0063162771524	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATCTGTATTAATTTAG	NA	False	NA	-48	True	NA	NA	NA	103926184	103944608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103926273_103928069_103928190_103934515_103934595_103941084_103941190_103944319
transcript_76518.known	chr2	+	1691	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTATCTTGACTCTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	103926145	103945699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
transcript_76522.known	chr2	+	822	2	FSM	ENSMUSG00000032671.6	ENSMUST00000040374.6	822	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATAGCCTCTTTCCTCT	7939	False	NA	NA	False	NA	NA	NA	103953113	103955094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_103953675_103954833
transcript_76529.known	chr2	-	4125	16	FSM	ENSMUSG00000027177.15	ENSMUST00000111124.8	4125	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_15	13.0833227176178	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTAGCCATGGCACAA	NA	False	NA	NA	False	AATAAA	-16	NA	104324035	104260125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899_104264191_104264682_104264845_104264934_104265063_104265280_104265403_104267341_104267466_104268195_104268353_104269574_104269760_104270550_104270638_104271589_104271710_104276856_104276981_104301093_104302193_104323565
transcript_76530.known	chr2	-	7454	16	FSM	ENSMUSG00000027177.15	ENSMUST00000028600.14	7454	16	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	6.77446184824546	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGCTGGCTTTTTTTC	NA	False	NA	-1	True	ATTAAA	-20	NA	104324791	104256825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_104260677_104261071_104261200_104261496_104261733_104263512_104263654_104263899_104264191_104264682_104264845_104264934_104265063_104265280_104265403_104267341_104267466_104268195_104268353_104269574_104269760_104270550_104270638_104271589_104271710_104276856_104276981_104301093_104302193_104324292
transcript_76538.known	chr2	+	582	4	FSM	ENSMUSG00000086454.8	ENSMUST00000125854.8	582	4	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_3	243.142390837596	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTGGTTCAAGCCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	104389528	104401774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_104389552_104390068_104390321_104398205_104398278_104401539
transcript_76539.nnic	chr2	+	1234	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-33	93	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	198.704694347052	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389474	104399270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_104389552_104390068_104390321_104398205_104398836_104398995
transcript_76542.nnic	chr2	+	1503	4	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-24	93	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_1	171.663106759205	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389483	104399270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_104389830_104390068_104390321_104398205_104398836_104398995
transcript_76546.nnic	chr2	+	1229	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-1	93	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	214.187353086549	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389522	104399270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_104389595_104390068_104390321_104398205_104398836_104398995
transcript_76548.known	chr2	+	536	3	FSM	ENSMUSG00000086454.8	ENSMUST00000127350.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	238	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAGCATGAAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	104389536	104398474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_104389552_104390068_104390321_104398205
transcript_76549.nic	chr2	+	1141	3	NIC	ENSMUSG00000086454.8	novel	582	4	NA	NA	-2	93	intron_retention	FALSE	canonical	3	23	junction_2	277	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389526	104399270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_104390321_104398205_104398278_104398995
transcript_76551.nnic	chr2	+	1751	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-33	93	intron_retention	FALSE	canonical	3	251	junction_2	163	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389474	104399270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_104390321_104398205_104398836_104398995
transcript_76552.nnic	chr2	+	1461	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-24	-7110	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	77	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	104389483	104391285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_104389830_104390068_104390321_104390422
transcript_76553.known	chr2	+	770	3	FSM	ENSMUSG00000086454.8	ENSMUST00000146553.8	770	3	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	196.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAACCTGTTCAGACATG	NA	False	NA	NA	False	NA	NA	NA	104389507	104398401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_104389830_104390068_104390321_104398205
transcript_76554.known	chr2	+	677	3	FSM	ENSMUSG00000086454.8	ENSMUST00000136364.8	677	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	266	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGTGAACCTGTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	104389523	104398398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_104389756_104390068_104390321_104398205
transcript_76556.nnic	chr2	+	1389	3	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-1	93	intron_retention	FALSE	canonical	3	58	junction_1	259.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389522	104399270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_104389595_104390068_104390321_104398205
transcript_76557.known	chr2	+	707	2	FSM	ENSMUSG00000086454.8	ENSMUST00000127237.2	707	2	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCGAAGTGAACCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	104389803	104398395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_104390321_104398205
transcript_76561.known	chr2	+	2817	21	FSM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_7	45.0891062231222	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTGTTTCTTTGTATG	6900	False	NA	19	True	AATAAA	-20	NA	104420867	104495774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
transcript_76565.nic	chr2	+	532	5	ISM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	-23	20353	-23	-18362	5prime_fragment	FALSE	canonical	3	213	junction_4	66.0014204392602	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGAAATCATGGTCTT	6877	False	NA	NA	False	NA	NA	NA	104420844	104475421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323
transcript_76566.known	chr2	-	630	3	FSM	ENSMUSG00000027175.11	ENSMUST00000132600.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTTTAAAATAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104542511	104535294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_104535547_104536700_104536888_104542320
transcript_76567.known	chr2	+	2589	3	FSM	ENSMUSG00000027176.9	ENSMUST00000122900.2	2589	3	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	20.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCGGTATTTCATGGTGT	6909	False	NA	NA	False	AATAAA	-22	NA	104420876	104441751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_104421048_104439215_104439318_104439435
transcript_76568.known	chr2	-	1801	9	FSM	ENSMUSG00000027173.8	ENSMUST00000028595.8	1801	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_7	14.7394029729837	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTCAGAATGGTGTG	NA	False	NA	-9	True	AATAAA	-24	NA	104573223	104552128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104558427_104558556_104560528_104560920_104573026
transcript_76578.nic	chr2	-	3639	3	ISM	ENSMUSG00000074994.7	ENSMUST00000231375.2	9037	12	-252	32284	-252	-32284	5prime_fragment	FALSE	canonical	3	56	junction_1	7	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCTAAAGGAAAAGAACAAGG	NA	False	NA	NA	False	AAAACA	-35	NA	104647357	104617423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_104620543_104625532_104625640_104646944
transcript_76581.known	chr2	-	2872	6	FSM	ENSMUSG00000027171.11	ENSMUST00000028593.11	2872	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	3.61109401705356	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAACAAAAACGTAG	NA	False	NA	NA	False	NA	NA	NA	104680221	104661085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_104663156_104669666_104669800_104672399_104672449_104675334_104675499_104679420_104679546_104679890
transcript_76590.known	chr2	-	1283	11	FSM	ENSMUSG00000027170.13	ENSMUST00000028592.12	1283	11	0	0	0	0	multi-exon	FALSE	canonical	3	1722	junction_10	235.400531010446	1300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2640	False	NA	-16	True	AGTAAA	-17	NA	104847425	104830000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
transcript_766.known	chr1	+	1087	5	FSM	ENSMUSG00000004768.15	ENSMUST00000151482.8	1087	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	8.16624148553054	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	33759218	33774435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782
transcript_7660.known	chr1	+	3261	7	FSM	ENSMUSG00000026634.17	ENSMUST00000123384.8	3261	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	84.3756481456587	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGGACAGAGAAGTT	NA	False	NA	16	True	AATAAA	-18	NA	190660688	190679159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_190660956_190669640_190669898_190671283_190671354_190673070_190673493_190675026_190675085_190675973_190676138_190677136
transcript_76600.known	chr2	+	1556	4	FSM	ENSMUSG00000055312.3	ENSMUST00000068813.3	1556	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGCTGAGTTGTGACAG	NA	False	NA	NA	False	AATAAA	-25	NA	105054664	105210141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_105054726_105114945_105115031_105128070_105128314_105208974
transcript_76603.known	chr2	-	2720	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	0	0	0	0	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	433	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACAAGCTGGAGTTATCA	NA	False	NA	NA	False	NA	NA	NA	105229664	105216635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
transcript_76607.known	chr2	-	3048	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTTTCTCTTACCCTG	NA	False	NA	-4	True	AATAAA	-30	NA	105734909	105531371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
transcript_76614.known	chr2	+	955	7	FSM	ENSMUSG00000042670.6	ENSMUST00000037499.6	955	7	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	38.970073988468	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGACTATCTCATATTTG	NA	False	NA	NA	False	TATAAA	-22	NA	105734982	105795903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794524_105794636_105795608
transcript_76615.nnic	chr2	+	684	6	NIC	ENSMUSG00000042670.6	novel	955	7	NA	NA	-3	-140	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	170.067516004674	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTATGTTTTAAAT	NA	False	NA	14	True	AATAAA	-15	NA	105734979	105795763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_105735076_105738668_105738775_105763609_105763699_105767336_105767464_105794524_105794636_105795608
transcript_76619.known	chr2	-	1197	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	0	0	0	0	multi-exon	TRUE	canonical	3	201	junction_2	6.37867541108654	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAGTATTCTTTATAG	NA	False	NA	1	True	TATAAA	-19	NA	105833894	105797053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
transcript_76622.known	chr2	-	697	4	FSM	ENSMUSG00000027166.15	ENSMUST00000124163.8	697	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	95.3496489534993	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAACTTTTGTTTTCTCT	NA	False	NA	-74	True	NA	NA	NA	105833608	105797128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_105797440_105800792_105800862_105832273_105832421_105833438
transcript_76627.known	chr2	-	1024	7	FSM	ENSMUSG00000085218.8	ENSMUST00000123623.8	1024	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTTTTCTTCCGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	106480709	106473261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_106473496_106474045_106474221_106474403_106474515_106476687_106476824_106477697_106477808_106478219_106478407_106480638
transcript_76631.known	chr2	+	2848	7	FSM	ENSMUSG00000016386.16	ENSMUST00000111063.8	2848	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	4.49691252107735	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGTGCTGCGTGGTTGGGC	NA	False	NA	NA	False	AATAAA	-18	NA	106523613	106698701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_106524167_106529632_106529881_106575044_106575227_106613977_106614204_106691832_106691949_106694999_106695114_106697292
transcript_76638.known	chr2	-	3337	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	AATAAA	-19	NA	106804769	106792871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
transcript_76639.nnic	chr2	-	3280	5	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	AATAAA	-19	NA	106804742	106792871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
transcript_76643.nnic	chr2	-	3281	5	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	-63	-89	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGCAGGCTTACTGTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	106804832	106792960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
transcript_76645.nnic	chr2	-	1386	5	NNC	ENSMUSG00000027122.16	novel	1363	5	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATAAACTTTAATTTT	NA	False	NA	NA	False	AATAAA	-13	NA	106804750	106794773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
transcript_76647.nnic	chr2	-	1014	5	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	0	-364	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACGAAAACGAGGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	106804742	106795137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
transcript_76649.nic	chr2	-	3824	4	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	-25	-89	intron_retention	FALSE	canonical	3	182	junction_3	33.9247533357118	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGCAGGCTTACTGTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	106804794	106792960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804616
transcript_7665.known	chr1	+	1585	3	FSM	ENSMUSG00000026634.17	ENSMUST00000137608.8	1585	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	37.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATTGAAGA	NA	False	NA	NA	False	NA	NA	NA	190660688	190670632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_190660956_190665063_190665390_190669640
transcript_76651.nic	chr2	-	1961	4	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	0	2	intron_retention	FALSE	canonical	3	182	junction_3	33.9247533357118	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAAACTTTAATTTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	106804742	106794771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804616
transcript_76652.nnic	chr2	-	1931	4	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	0	2	intron_retention	FALSE	canonical	3	134	junction_3	55.0292851327566	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAAACTTTAATTTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	106804742	106794771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804646
transcript_76655.known	chr2	-	333	1	FSM	ENSMUSG00000083424.4	ENSMUST00000121779.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	108705603	108705270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_108705300_108705600
transcript_76659.known	chr2	-	1894	6	FSM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	7.25534285888682	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	109108635	108922641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109108537
transcript_76660.nic	chr2	-	1911	6	NIC	ENSMUSG00000057234.10	novel	2018	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	18.3891272223561	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTTATTTATTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	109111071	108922644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109110953
transcript_76663.known	chr2	+	3369	17	FSM	ENSMUSG00000027115.15	ENSMUST00000028527.8	3369	17	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_13	41.1567126967157	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGGTTTTCCTGTTTT	1376	False	NA	25	True	ATTAAA	-16	NA	109111082	109172092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
transcript_76668.known	chr2	+	1965	12	FSM	ENSMUSG00000027115.15	ENSMUST00000144924.8	1965	12	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.0380815007217	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAGACAATGTGAGGGA	1490	False	NA	NA	False	AATACA	-13	NA	109111196	109141179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891
transcript_76671.known	chr2	+	2176	11	FSM	ENSMUSG00000027115.15	ENSMUST00000151395.8	2176	11	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.6349416500198	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTAACGCCTCAGGATTT	1478	False	NA	NA	False	NA	NA	NA	109111184	109137846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194
transcript_76672.known	chr2	+	4228	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGGGGTAATGTGGTTG	NA	False	NA	31	True	AGTAAA	-21	NA	109721197	109731348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
transcript_7668.known	chr1	-	3897	8	FSM	ENSMUSG00000037568.13	ENSMUST00000166139.7	3897	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.82946406783796	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGCCTCTTAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	190711493	190679842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_190682454_190690810_190690927_190692294_190692677_190698399_190698475_190699125_190699183_190702600_190702690_190710377_190710785_190711333
transcript_76680.known	chr2	+	746	4	FSM	ENSMUSG00000027162.8	ENSMUST00000151163.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_1	18.4932420089069	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTGAGAGAATCCCAGG	NA	False	NA	NA	False	NA	NA	NA	109721214	109727083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580
transcript_76682.known	chr2	+	5060	18	FSM	ENSMUSG00000050199.14	ENSMUST00000046548.14	5060	18	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_13	11.7799900717261	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTGAAAACTGTTTTTT	NA	False	NA	40	True	ATTAAA	-22	NA	109747991	109844602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_109748651_109801036_109801109_109820049_109820122_109821448_109821521_109826898_109827115_109827937_109828010_109829750_109829820_109830640_109830713_109830904_109830977_109831274_109831344_109832810_109832883_109833798_109833865_109834895_109834968_109836848_109836921_109837489_109837616_109838429_109838546_109838926_109839011_109841595
transcript_76685.known	chr2	+	2070	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCACCATTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	109848161	109875661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
transcript_76687.nic	chr2	+	680	4	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	-16	4718	-16	-119	5prime_fragment	FALSE	canonical	3	423	junction_3	48.8353241914998	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAATAAGGAAATGGAAGAA	NA	False	NA	NA	False	AAGAAA	-13	NA	109848145	109870943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918
transcript_76688.nic	chr2	+	799	4	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	-16	4599	-16	0	5prime_fragment	FALSE	canonical	3	423	junction_3	48.8353241914998	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAGAGAAGGTATT	NA	False	NA	NA	False	AAAAAG	-18	NA	109848145	109871062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918
transcript_76689.nic	chr2	+	581	3	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	-16	12951	-16	-8352	5prime_fragment	FALSE	canonical	3	465	junction_2	38	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAAGAACGTGAAAAAAGG	NA	False	NA	NA	False	ATTAAA	-27	NA	109848145	109862710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_109848560_109852226_109852360_109862676
transcript_7669.nnic	chr1	-	4219	11	NNC	ENSMUSG00000066595.10	novel	4040	10	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	11.1427106217473	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTATATGTCCTTTAA	NA	False	NA	-2	True	AATAAA	-17	NA	190758410	190738046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732_190743844_190744335_190744440_190745560_190745629_190747554_190747696_190752632_190752760_190753272_190753454_190757573
transcript_76690.nic	chr2	+	648	3	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	-16	12884	-16	-8285	5prime_fragment	FALSE	canonical	3	465	junction_2	38	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGCAGGTAACAAAAACCA	NA	False	NA	NA	False	AGTAAA	-28	NA	109848145	109862777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_109848560_109852226_109852360_109862676
transcript_76692.nic	chr2	+	547	2	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	-16	23302	-16	-18703	5prime_fragment	FALSE	canonical	3	541	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAACTAAACAGTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	109848145	109852359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_109848560_109852226
transcript_76693.known	chr2	+	2275	14	FSM	ENSMUSG00000027134.5	ENSMUST00000028554.4	2275	14	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	5.67252278910358	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCAGAGGGTGGAATCATT	NA	False	NA	NA	False	NA	NA	NA	112069812	112077456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_112070403_112071795_112071939_112072269_112072491_112072820_112072934_112073045_112073107_112073348_112073408_112073603_112073639_112074185_112074241_112074327_112074411_112074664_112074791_112075007_112075141_112076140_112076240_112076619_112076777_112077056
transcript_76696.known	chr2	+	1109	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	0	0	0	0	multi-exon	FALSE	canonical	3	3938	junction_1	0	1326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTCTGGTAGGAGATAT	NA	False	NA	NA	False	NA	NA	NA	112092270	112093614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_112092423_112092657
transcript_767.known	chr1	+	2557	4	FSM	ENSMUSG00000004768.15	ENSMUST00000140354.8	2557	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	9.39266853573691	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAGAAAGAGAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	33758967	33765972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014
transcript_76700.known	chr2	+	6105	25	FSM	ENSMUSG00000027130.16	ENSMUST00000028549.14	6105	25	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	16.1464112799787	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATAAGTTGTGCTGTAGT	NA	False	NA	NA	False	AATAAA	-20	NA	112097163	112193501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_112097438_112146585_112146631_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
transcript_76702.known	chr2	+	6060	25	FSM	ENSMUSG00000027130.16	ENSMUST00000053666.8	6060	25	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	14.1194679432336	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATAAGTTGTGCTGTAGT	NA	False	NA	NA	False	AATAAA	-20	NA	112114921	112193501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_112115151_112146585_112146631_112163727_112163823_112164713_112164846_112166120_112166268_112167702_112167758_112168203_112168335_112169590_112169833_112172175_112172391_112174173_112174333_112174483_112174583_112174832_112174891_112177243_112177419_112177661_112177781_112179620_112179720_112181623_112181744_112182788_112182894_112183236_112183406_112184518_112184715_112185319_112185490_112186804_112186937_112187828_112187937_112188112_112188298_112188850_112188985_112190760
transcript_7671.known	chr1	-	4040	10	FSM	ENSMUSG00000066595.10	ENSMUST00000085635.6	4040	10	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	7.45521608765167	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATATGTCCTTTAAAAA	NA	False	NA	1	True	AATAAA	-20	NA	190758355	190738043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732_190743844_190744335_190744440_190745560_190745629_190747554_190747696_190753272_190753454_190757573
transcript_76710.known	chr2	-	983	5	FSM	ENSMUSG00000027131.4	ENSMUST00000028551.4	983	5	0	0	0	0	multi-exon	FALSE	canonical	3	778	junction_3	24.5395089600424	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAAGTTCCCCTTCAGT	4997	False	NA	-5	True	AATAAA	-29	NA	112198372	112193355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_112193700_112194136_112194298_112194496_112194651_112197746_112197862_112198163
transcript_76714.known	chr2	+	2886	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTGTGCATAGTTT	NA	False	NA	10	True	AATAAA	-20	NA	112209555	112244585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
transcript_76718.known	chr2	+	1734	4	FSM	ENSMUSG00000027132.4	ENSMUST00000151257.2	1734	4	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	36.4264860903284	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	112209570	112237863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418
transcript_76720.known	chr2	+	5826	5	FSM	ENSMUSG00000055943.6	ENSMUST00000069747.6	5826	5	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_1	48.4355241532493	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTGTGTTCATG	360	False	NA	NA	False	AATAAA	-15	NA	112285341	112302507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_112285646_112289804_112289925_112293145_112293285_112295081_112295163_112297325
transcript_76723.nnic	chr2	+	937	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	1	-4727	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	188.575415948103	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	361	False	NA	2	True	ATTAAA	-15	NA	112285342	112297780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_112285485_112289804_112289925_112293145_112293285_112295081_112295163_112297325
transcript_76726.known	chr2	+	4735	6	FSM	ENSMUSG00000003604.15	ENSMUST00000003705.12	4735	6	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_4	26.4227174983952	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAACAAACACAA	NA	False	NA	NA	False	GATAAA	-35	NA	112323308	112464918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_112323567_112344794_112344973_112455499_112455571_112458093_112458190_112460084_112460422_112461123
transcript_76731.known	chr2	+	4235	17	FSM	ENSMUSG00000044042.20	ENSMUST00000081349.9	4235	17	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	4.19076365356005	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTGTATTGATCTTAA	NA	False	NA	NA	False	NA	NA	NA	113271408	113540200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_113273005_113274686_113274805_113309246_113309309_113355495_113356287_113359657_113359809_113393627_113393716_113412442_113412505_113414375_113414465_113423431_113423562_113425367_113425515_113426677_113426738_113433513_113433635_113467076_113467170_113518453_113518506_113523353_113523504_113538207_113538293_113539760
transcript_76735.known	chr2	-	4458	14	FSM	ENSMUSG00000041219.15	ENSMUST00000110949.9	4458	14	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	137.812367081877	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGTCTTGTCTGCGTGTT	6058	False	NA	-7	True	ATTAAA	-14	NA	113678960	113661839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_113662643_113663014_113663107_113663244_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
transcript_76738.known	chr2	-	4958	12	FSM	ENSMUSG00000041219.15	ENSMUST00000102545.8	4958	12	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_2	47.4803134497789	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAATGTTATTTA	6017	False	NA	-58	True	GATAAA	-18	NA	113679001	113661890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
transcript_7674.known	chr1	-	3666	9	FSM	ENSMUSG00000066595.10	ENSMUST00000192666.2	3666	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	11.3571288184999	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTATATGTCCTTTAAA	NA	False	NA	-1	True	AATAAA	-18	NA	190758164	190738045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732_190743844_190744335_190744440_190745560_190745629_190747554_190747696_190757573
transcript_76743.known	chr2	-	1316	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	872	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	7160	False	NA	NA	False	AGTAAA	-19	NA	113751486	113750170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_113750200_113751500
transcript_76744.known	chr2	-	1473	7	FSM	ENSMUSG00000068614.8	ENSMUST00000090269.7	1473	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTTCTTTCTTGTGT	NA	False	NA	NA	False	AATAAA	-28	NA	113883368	113877762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_113878091_113878603_113878786_113879649_113879842_113879995_113880158_113880769_113881095_113882383_113882542_113883242
transcript_76745.known	chr2	-	4888	35	FSM	ENSMUSG00000040383.17	ENSMUST00000043160.13	4888	35	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_21	28.9958832539162	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAGGCATACTTGCCCTT	7809	False	NA	-3	True	ATTAAA	-19	NA	114005820	113931650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_113932211_113934484_113934599_113936280_113936456_113938584_113938671_113940364_113940536_113942962_113943135_113943699_113943888_113945060_113945133_113947003_113947142_113949157_113949380_113950390_113950527_113951685_113951796_113956371_113956483_113957436_113957507_113957993_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
transcript_76746.known	chr2	-	4352	34	FSM	ENSMUSG00000040383.17	ENSMUST00000102543.5	4352	34	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	51.8196880872694	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAATAAGTTTGATGTG	7871	False	NA	NA	False	AGTAAA	-25	NA	114005758	113935642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_113935843_113936280_113936456_113938584_113938671_113940364_113940536_113942962_113943135_113943699_113943888_113945060_113945133_113947003_113947142_113949157_113949380_113950390_113950527_113951685_113951796_113956371_113956483_113957436_113957507_113957993_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
transcript_76750.known	chr2	-	4300	2	FSM	ENSMUSG00000040321.4	ENSMUST00000050668.4	4300	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGATTTTGTTTGGTGA	NA	False	NA	-4	True	AATAAA	-25	NA	114031950	114023941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_114028109_114031817
transcript_76751.known	chr2	-	2597	2	FSM	ENSMUSG00000040321.4	ENSMUST00000123562.2	2597	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGAAAAAAAAAAATCTAGG	NA	False	NA	NA	False	TTTAAA	-42	NA	114031921	114029040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_114031534_114031817
transcript_76752.known	chr2	-	2734	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTGTGTGAATGTC	NA	False	NA	-6	True	NA	NA	NA	114485445	114346900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
transcript_76756.known	chr2	-	2632	8	FSM	ENSMUSG00000057147.14	ENSMUST00000028640.14	2632	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	75.5804747488748	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTGTGAATGTCAGTT	NA	False	NA	-2	True	NA	NA	NA	114485434	114346896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_114348774_114350192_114350281_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
transcript_76757.known	chr2	-	3010	3	FSM	ENSMUSG00000057147.14	ENSMUST00000138975.2	3010	3	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	16	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTTTTCTATAGAGCCA	NA	False	NA	NA	False	ATTAAA	-15	NA	114485386	114472555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_114475396_114478221_114478317_114485311
transcript_76763.nnic	chr2	+	2696	12	NNC	ENSMUSG00000040282.14	novel	2735	11	NA	NA	-56	-179	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	114.47061046905	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTAAGTTACCAGTTTG	NA	False	NA	8	True	ATTAAA	-17	NA	115412140	115609070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_115412467_115434044_115434112_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
transcript_76768.nnic	chr2	+	2703	12	NNC	ENSMUSG00000040282.14	novel	2735	11	NA	NA	-67	-180	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_10	116.799821691248	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCCTAAGTTACCAGTTT	NA	False	NA	7	True	ATTAAA	-16	NA	115412129	115609069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115579557_115579622_115607382
transcript_76769.known	chr2	+	2735	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTACCCTTCTACCTGGA	NA	False	NA	7	True	AATAAA	-17	NA	115412213	115609249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
transcript_7678.known	chr1	-	1216	1	FSM	ENSMUSG00000066595.10	ENSMUST00000191946.2	1216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGAGTCCAGCTATTAG	NA	False	NA	NA	False	AATAAA	-28	NA	190758321	190757105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_190757100_190758300
transcript_76783.known	chr2	+	1936	4	FSM	ENSMUSG00000040282.14	ENSMUST00000147968.2	1936	4	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_2	10.9645894689324	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTAGCCAGTGCTCTTA	NA	False	NA	NA	False	NA	NA	NA	115412281	115471124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484
transcript_76785.known	chr2	-	3229	13	FSM	ENSMUSG00000027210.21	ENSMUST00000110906.9	3229	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.4825309634758	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGTGACGTTATGTTA	NA	False	NA	-77	True	ATTAAA	-12	NA	115895202	115693625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_115694995_115697290_115697386_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115894572
transcript_76789.known	chr2	-	3697	13	FSM	ENSMUSG00000027210.21	ENSMUST00000110908.9	3697	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.8535710713571	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGTGTTTTTTAATG	NA	False	NA	4	True	AATAAA	-25	NA	115896320	115693544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
transcript_7679.known	chr1	-	1196	10	FSM	ENSMUSG00000026632.18	ENSMUST00000027945.6	1196	10	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	9.99011857466179	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTATTTTTAAAAAAGGAA	NA	False	NA	-4	True	TATAAA	-16	NA	190795102	190778038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_190778518_190781478_190781557_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
transcript_76791.known	chr2	-	2844	13	FSM	ENSMUSG00000027210.21	ENSMUST00000074285.8	2844	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.4825309634758	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATGTT	NA	False	NA	NA	False	NA	NA	NA	115894993	115693780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115894572
transcript_76792.known	chr2	-	3718	13	FSM	ENSMUSG00000027210.21	ENSMUST00000110907.8	3718	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.8535710713571	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGTGTTTTTTAATG	NA	False	NA	4	True	AATAAA	-25	NA	115896320	115693544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_115694995_115697290_115697386_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
transcript_76794.known	chr2	-	2810	12	FSM	ENSMUSG00000027210.21	ENSMUST00000102538.11	2810	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	18.227216050694	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGTGTTTTTTAATG	NA	False	NA	4	True	AATAAA	-25	NA	115895528	115693544	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_115694995_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
transcript_7680.known	chr1	-	1242	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	11.4309521329882	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGATTTGTCTTGGACA	NA	False	NA	12	True	TATAAA	-32	NA	190795129	190778022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
transcript_76801.known	chr2	-	721	2	FSM	ENSMUSG00000086328.2	ENSMUST00000140185.2	721	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATCTGAGTCTGTAC	NA	False	NA	NA	False	AATAAA	-20	NA	115897925	115896698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_115897100_115897605
transcript_76803.nic	chr2	+	470	4	ISM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	-22	11299	-22	0	5prime_fragment	FALSE	canonical	2	2	junction_2	0.471404520791032	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATAAAAATAGTGAAATTT	NA	False	NA	NA	False	CATAAA	-12	NA	117080197	117090722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_117080320_117088114_117088261_117089701_117089837_117090655
transcript_76806.known	chr2	+	1861	8	FSM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.1780301787479	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACTGTGTCATGGCTTA	NA	False	NA	44	True	ATTAAA	-22	NA	117080219	117102021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_117080320_117088114_117088261_117089701_117089837_117090655_117090835_117093319_117093401_117094303_117094421_117098260_117098429_117101086
transcript_76807.nic	chr2	-	5043	16	ISM	ENSMUSG00000027347.19	ENSMUST00000178884.8	5104	17	4275	0	4107	0	3prime_fragment	FALSE	non_canonical	0	0	junction_14	12.4250642743699	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTCAAAGTCGTGTGC	NA	False	NA	-8	True	CATAAA	-15	NA	117169083	117110474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_117113158_117115333_117115714_117116552_117116706_117117322_117117360_117118304_117118450_117119097_117119208_117119825_117119931_117120796_117120878_117122146_117122423_117124234_117124352_117125189_117125364_117128942_117129097_117130923_117131056_117132441_117132503_117136256_117136365_117168756
transcript_76811.known	chr2	-	1673	11	FSM	ENSMUSG00000027344.15	ENSMUST00000028821.10	1673	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.92574776766556	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCTGGCTTTATTGTCT	NA	False	NA	NA	False	NA	NA	NA	118087447	118035368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_118035656_118052806_118052942_118063384_118063541_118067394_118067506_118070872_118071031_118072123_118072217_118078775_118078873_118080286_118080442_118082119_118082301_118083766_118083900_118087280
transcript_76813.known	chr2	+	5212	39	FSM	ENSMUSG00000005102.14	ENSMUST00000005233.12	5212	39	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_24	13.8429307338417	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTGTTTTCCATTTGCA	NA	False	NA	9	True	AATAAA	-15	NA	118219098	118305715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363_118241445_118243415_118243565_118247707_118247824_118251198_118251354_118252443_118252980_118257045_118257153_118258308_118258467_118261276_118261705_118262691_118262762_118265103_118265188_118266643_118266767_118269446_118269552_118271642_118271701_118272495_118272576_118273605_118273708_118276740_118276795_118278756_118278994_118280790_118280867_118281892_118282015_118285308_118285359_118286256_118286426_118287606_118287724_118288306_118288373_118292207_118292379_118292704_118292840_118293144_118293253_118294426_118294556_118296833_118296921_118298642_118298756_118300724_118300784_118301316_118301415_118302370_118302440_118303122_118303168_118304512_118304632_118305483
transcript_76815.nic	chr2	+	3034	19	ISM	ENSMUSG00000005102.14	ENSMUST00000005233.12	5212	39	-34	31964	-34	-9020	5prime_fragment	FALSE	canonical	3	81	junction_8	8.9504810547317	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCGTATGGAGATCAGAA	NA	False	NA	5	True	AATACA	-16	NA	118219064	118273751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363_118241445_118243415_118243565_118247707_118247824_118251198_118251354_118252443_118252980_118257045_118257153_118258308_118258467_118261276_118261705_118262691_118262762_118265103_118265188_118266643_118266767_118269446_118269552_118271642_118271701_118272495_118272576_118273605
transcript_76816.nic	chr2	+	674	5	ISM	ENSMUSG00000005102.14	ENSMUST00000110877.8	2134	11	-34	17295	-34	-17295	5prime_fragment	FALSE	canonical	3	82	junction_2	10.4013220313574	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAGATCAAGGAAGAGAA	NA	False	NA	16	True	NA	NA	NA	118219064	118241399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363
transcript_76820.known	chr2	-	798	5	FSM	ENSMUSG00000009549.15	ENSMUST00000009693.15	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_1	23.7421039505769	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGGTTTGTTTTTCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	118310192	118306330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310071
transcript_76821.known	chr2	-	765	5	FSM	ENSMUSG00000009549.15	ENSMUST00000138189.2	765	5	0	0	0	0	multi-exon	FALSE	canonical	2	110	junction_4	586.489130334058	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTATCCTACAGGTGGTT	NA	False	NA	-13	True	ATTAAA	-5	NA	118310129	118306341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310030
transcript_76827.known	chr2	-	4642	5	FSM	ENSMUSG00000040093.17	ENSMUST00000090219.13	4642	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.11803398874989	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTATTTTTTCTA	NA	False	NA	1	True	AATAAA	-16	NA	118380168	118359237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_118363141_118375562_118375727_118377196_118377494_118379521_118379652_118380020
transcript_76839.known	chr2	+	3668	23	FSM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	0	0	0	0	multi-exon	TRUE	canonical	3	422	junction_10	74.3091181573454	1144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	15	True	AATAAA	-16	NA	118428691	118472072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
transcript_76866.known	chr2	+	3677	10	FSM	ENSMUSG00000074923.11	ENSMUST00000110853.8	3677	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1.56347191994114	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTGGGTTTTTCATTC	NA	False	NA	NA	False	ATTAAA	-12	NA	118507709	118528499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118507783_118508203_118508310_118519277_118519487_118520214_118520872_118523707_118524206_118524347_118524482_118524774_118524902_118524995_118525122_118525687_118525823_118526887
transcript_76867.known	chr2	+	4411	11	FSM	ENSMUSG00000074923.11	ENSMUST00000099557.10	4411	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.11896201004171	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGGTTTTTCATTCTC	NA	False	NA	NA	False	ATTAAA	-14	NA	118493783	118528501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118494505_118495263_118495348_118508203_118508310_118519277_118519487_118520214_118520872_118523707_118524206_118524347_118524482_118524774_118524902_118524995_118525122_118525687_118525823_118526887
transcript_76871.known	chr2	+	839	10	FSM	ENSMUSG00000027331.16	ENSMUST00000123104.2	839	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	167.506403046953	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACGAAGCCAGTGACTT	NA	False	NA	NA	False	NA	NA	NA	118644776	118664549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118661292_118661451_118662033_118662109_118664480
transcript_76876.known	chr2	+	4602	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_3	12.8038080273019	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATTCACCCTCA	NA	False	NA	NA	False	AATAAA	-7	NA	118644483	118668177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
transcript_76879.known	chr2	+	799	8	FSM	ENSMUSG00000027331.16	ENSMUST00000134579.8	799	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	146.271623205262	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCAGTTGATGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	118644712	118664730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118644791_118644881_118644974_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
transcript_7688.nnic	chr1	+	2964	7	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	-35	-1916	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	82.1517904045108	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTTTTACTGTATTTT	NA	False	NA	16	True	AATAAA	-20	NA	190795173	190816755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367_190815835_190815887
transcript_76884.known	chr2	+	3665	12	FSM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_8	15.0382432594562	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAAAGTGGATGGGAAT	NA	False	NA	NA	False	AATAAA	-20	NA	118692434	118713390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708141_118708247_118708355_118708429_118710933
transcript_76886.nnic	chr2	+	2007	11	NIC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	-4	337	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	56.9639359595174	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGCGCCCAAAGCCG	NA	False	NA	45	True	ATTAAA	-17	NA	118692430	118711833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708355_118708429_118710933
transcript_7689.known	chr1	+	4879	6	FSM	ENSMUSG00000062510.13	ENSMUST00000078259.8	4879	6	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	16.7164589551735	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAGAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	190795227	190818671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367
transcript_76892.nnic	chr2	+	1172	10	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	-4	313	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	69.6920917631333	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCTGAGATCATAGAAC	NA	False	NA	NA	False	NA	NA	NA	118692430	118707760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118707622
transcript_76895.nic	chr2	+	4577	7	NIC	ENSMUSG00000040007.9	novel	662	2	NA	NA	-218	0	combination_of_known_junctions	TRUE	canonical	3	13	junction_1	12.733376963276	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTATTTTCTGTGTGTTT	NA	False	NA	22	True	AATAAA	-32	NA	118730639	118755009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_118730928_118746368_118747791_118749613_118749997_118750677_118750838_118751236_118751314_118752076_118752178_118752863
transcript_76896.nnic	chr2	+	4568	7	NNC	ENSMUSG00000040007.9	novel	662	2	NA	NA	-218	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	14.9182960004002	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTATTTTCTGTGTGTTT	NA	False	NA	22	True	AATAAA	-32	NA	118730639	118755009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_118730928_118746368_118747791_118749613_118749997_118750677_118750838_118751236_118751314_118752085_118752178_118752863
transcript_76897.known	chr2	+	2090	1	FSM	ENSMUSG00000074916.6	ENSMUST00000099546.6	2090	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAACTCTGTAATTCCC	9712	False	NA	8	True	AATAAA	-19	NA	118756976	118759066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118757000_118759100
transcript_76899.known	chr2	-	1870	4	FSM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	9.0921211313239	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAAAGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	118859874	118848259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_118849646_118852549_118852707_118857618_118857869_118859797
transcript_769.nnic	chr1	-	1857	4	NNC	ENSMUSG00000042215.9	novel	1860	3	NA	NA	-41	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	21.2968437932844	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	-5	True	NA	NA	NA	33796917	33784564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_33785227_33785270_33786098_33787297_33787408_33796659
transcript_76900.nic	chr2	-	1500	4	NIC	ENSMUSG00000039983.14	novel	1870	4	NA	NA	-5	-384	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	18.6726180988812	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAACTGTGTAGTGTGTG	NA	False	NA	-4	True	TATAAA	-13	NA	118859879	118848643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_118849646_118852549_118852707_118857618_118857869_118859788
transcript_76902.nic	chr2	-	1243	4	NIC	ENSMUSG00000039983.14	novel	1870	4	NA	NA	-5	-641	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	18.6726180988812	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAAAACGTGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	118859879	118848900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_118849646_118852549_118852707_118857618_118857869_118859788
transcript_76904.known	chr2	-	732	3	FSM	ENSMUSG00000039983.14	ENSMUST00000110833.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	11	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTCTAATCTTCAGTGC	NA	False	NA	NA	False	NA	NA	NA	118859858	118852285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_118852707_118857618_118857869_118859797
transcript_76905.known	chr2	-	828	3	FSM	ENSMUSG00000039983.14	ENSMUST00000110834.8	828	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	21.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATATATTTGTTAAGCATC	NA	False	NA	NA	False	AATAAA	-17	NA	118859874	118852214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_118852707_118857618_118857869_118859788
transcript_76906.known	chr2	+	2706	3	FSM	ENSMUSG00000027324.2	ENSMUST00000028796.2	2706	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	2.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGATTCTGGTTCTCT	3255	False	NA	NA	False	CATAAA	-41	NA	118865270	118870250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118865950_118867398_118867696_118868520
transcript_7691.known	chr1	+	837	5	FSM	ENSMUSG00000062510.13	ENSMUST00000139340.8	837	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	96.9442494426565	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTTTCTGAGGTCAG	NA	False	NA	NA	False	NA	NA	NA	190795220	190809136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190808813
transcript_76911.nic	chr2	+	1576	8	NIC	ENSMUSG00000027326.14	novel	1573	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	17.5963818173289	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAATAATAGCCAT	7211	False	NA	NA	False	AATAAA	-28	NA	118877599	118899752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_118877708_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
transcript_76912.known	chr2	+	5527	8	FSM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	11.0822527732683	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATAATTGTGTCTTGTG	7242	False	NA	NA	False	ATTAAA	-18	NA	118877630	118903400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
transcript_76913.known	chr2	+	1573	8	FSM	ENSMUSG00000027326.14	ENSMUST00000152380.8	1573	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	17.907927784951	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAATAATAGCCAT	7211	False	NA	NA	False	AATAAA	-28	NA	118877599	118899752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118877705_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
transcript_76918.nic	chr2	+	602	5	ISM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	-18	10538	13	-3591	5prime_fragment	FALSE	canonical	3	41	junction_1	12.8840987267251	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAAGCTCTCGTCGAGTC	7224	False	NA	NA	False	AAGAAA	-3	NA	118877612	118892862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840
transcript_76919.known	chr2	+	6525	24	FSM	ENSMUSG00000027326.14	ENSMUST00000099542.9	6525	24	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	14.4274470622304	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAATCCATTTACC	7211	False	NA	NA	False	NA	NA	NA	118877599	118934602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118877705_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603_118903101_118906712_118906852_118907416_118907485_118908378_118908478_118911990_118912107_118917040_118917132_118917956_118918074_118919279_118919368_118924486_118924565_118924746_118924787_118925608_118925711_118927898_118928000_118930242_118930312_118931193_118931304_118932462_118932582_118932979_118933103_118934458
transcript_76920.known	chr2	+	370	7	FSM	ENSMUSG00000027326.14	ENSMUST00000153300.8	370	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	18.7327698610394	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTCAGACTCAGATGCAA	7239	False	NA	NA	False	NA	NA	NA	118877627	118896453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118877708_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429
transcript_76925.known	chr2	-	2249	13	FSM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	0	0	0	0	multi-exon	TRUE	canonical	3	215	junction_12	29.1989107483291	497	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTTGACTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	118987515	118967481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
transcript_76931.known	chr2	+	3368	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	0	0	0	0	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTACAAGTCCTATGCTCT	NA	False	NA	NA	False	AATAAA	-25	NA	118943287	118967771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
transcript_76938.known	chr2	+	2975	9	FSM	ENSMUSG00000027323.11	ENSMUST00000152327.8	2975	9	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_7	266.546870878275	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACTCCAGGCACCTC	NA	False	NA	NA	False	AAAACA	-41	NA	118943297	118967518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964867_118964990_118965529
transcript_76947.known	chr2	+	2849	7	FSM	ENSMUSG00000027323.11	ENSMUST00000110828.2	2849	7	0	0	0	0	multi-exon	FALSE	canonical	3	651	junction_5	99.374152686814	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACATAAAATAAAGTAAGTTA	NA	False	NA	NA	False	NA	NA	NA	118943294	118964080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984
transcript_76953.known	chr2	+	645	3	FSM	ENSMUSG00000046814.4	ENSMUST00000057454.4	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTTGTGCAGTGACTC	1208	False	NA	20	True	AATAAA	-27	NA	118998253	119002871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_118998355_119000156_119000252_119002422
transcript_76960.known	chr2	+	2008	11	FSM	ENSMUSG00000068580.12	ENSMUST00000090174.11	2008	11	0	0	0	0	multi-exon	FALSE	canonical	1	23	junction_1	26.2152627299442	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGATGTTTTTTCTGTC	4288	False	NA	8	True	NA	NA	NA	119039114	119047530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119039665_119040962_119041085_119041261_119041313_119041661_119041781_119041878_119042025_119042386_119042496_119045314_119045522_119045934_119046009_119046689_119046789_119046912_119047023_119047109
transcript_76962.known	chr2	-	1008	11	FSM	ENSMUSG00000034278.4	ENSMUST00000038439.4	1008	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	69.3010822426317	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTACTTTTCTTCCTCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	119039276	119002980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014079_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
transcript_76965.known	chr2	+	745	1	FSM	ENSMUSG00000081572.4	ENSMUST00000122061.2	745	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	9857	False	NA	NA	False	NA	NA	NA	119017997	119018742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119018000_119018700
transcript_76967.nnic	chr2	-	833	5	NNC	ENSMUSG00000027317.9	novel	787	4	NA	NA	-366	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	15.337861650178	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119060753	119048599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022_119060323_119060642
transcript_76969.known	chr2	-	787	4	FSM	ENSMUSG00000027317.9	ENSMUST00000076084.6	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	4.96655480858378	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119060387	119048599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022
transcript_76970.known	chr2	-	790	5	FSM	ENSMUSG00000027317.9	ENSMUST00000110820.3	790	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	21.0297408448131	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCTTTAGGAACCCAGA	NA	False	NA	NA	False	NA	NA	NA	119060346	119048620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119058237_119058303_119060022
transcript_76978.known	chr2	+	2273	11	FSM	ENSMUSG00000027315.14	ENSMUST00000028783.14	2273	11	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_1	46.3102580429002	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTTTGTTGAGCTC	NA	False	NA	13	True	AATAAA	-1	NA	119067842	119079995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119067954_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
transcript_7698.known	chr1	+	801	3	FSM	ENSMUSG00000026630.10	ENSMUST00000027943.6	801	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	4.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTCCTTTGTCCATCT	NA	False	NA	NA	False	AATAAA	-12	NA	190830521	190841140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_190830725_190832924_190833030_190840647
transcript_76983.known	chr2	+	1913	11	FSM	ENSMUSG00000027315.14	ENSMUST00000110816.8	1913	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	81.6752104374393	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGACCTGCTTATCCAAG	NA	False	NA	NA	False	NA	NA	NA	119067957	119079676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119068028_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
transcript_7700.known	chr1	-	1984	4	FSM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	6.37704215656966	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTAGTGTGGCACTGGTTT	NA	False	NA	0	True	AATAAA	-23	NA	190915537	190902492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_190903877_190904571_190904680_190909427_190909672_190915289
transcript_77003.known	chr2	+	2323	10	FSM	ENSMUSG00000027315.14	ENSMUST00000110817.3	2323	10	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_4	16.649620912898	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTCCTCCCACCCCCAC	NA	False	NA	26	True	AATAAA	-14	NA	119068033	119080008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
transcript_77004.nnic	chr2	-	1761	4	NNC	ENSMUSG00000034226.8	novel	1703	3	NA	NA	-6748	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	7.54247233265651	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	4257	False	NA	-5	True	AATAAA	-17	NA	119108501	119099681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_119100969_119101162_119101222_119101396_119101722_119108411
transcript_77005.known	chr2	-	1703	3	FSM	ENSMUSG00000034226.8	ENSMUST00000037360.8	1703	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	NA	False	NA	-5	True	AATAAA	-17	NA	119101753	119099681	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119100969_119101162_119101222_119101396
transcript_77009.known	chr2	+	4054	5	FSM	ENSMUSG00000034216.13	ENSMUST00000037280.5	4054	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	7.17635004720366	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCCCTCTTCCTAAATC	6377	False	NA	NA	False	TATAAA	-13	NA	119119222	119128934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119119612_119120633_119120776_119123178_119123271_119123399_119125271_119127374
transcript_7701.known	chr1	+	716	2	FSM	ENSMUSG00000073478.7	ENSMUST00000139056.3	716	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATGGATGTGCAAACAT	NA	False	NA	NA	False	AATAAA	-25	NA	190956650	190958032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_190956740_190957405
transcript_77012.known	chr2	+	3194	4	FSM	ENSMUSG00000034216.13	ENSMUST00000139367.8	3194	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	5.71547606649408	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6375	False	NA	NA	False	NA	NA	NA	119119220	119125968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119119612_119120633_119120776_119123178_119123271_119123399
transcript_77017.known	chr2	+	1637	3	FSM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	33	514	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGTAGGGAAAGCCTC	7152	False	NA	81	True	GATAAA	-13	NA	119181709	119184862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119182118_119182837_119182874_119183669
transcript_77019.known	chr2	-	6354	36	FSM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_35	12.9307732931632	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAAGTGTCTGTGGTCTTT	NA	False	NA	0	True	AATAAA	-26	NA	119308168	119203522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380_119257549_119258957_119259044_119261468_119261587_119262408_119262494_119263671_119263815_119264629_119264690_119269855_119269952_119272093_119272175_119272863_119273074_119274927_119274996_119275941_119276138_119277336_119277541_119278685_119278740_119280483_119280699_119281810_119281932_119284536_119284699_119286865_119286934_119287052_119287223_119288561_119288748_119307859
transcript_7702.known	chr1	-	742	4	FSM	ENSMUSG00000037499.10	ENSMUST00000046770.10	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	10.5303793326209	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTGTATGGTTCTTG	NA	False	NA	0	True	AATAAA	-19	NA	191050391	191038985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191039287_191042115_191042220_191043656_191043718_191050115
transcript_77024.nic	chr2	-	2614	12	ISM	ENSMUSG00000048647.10	ENSMUST00000060009.9	6042	13	645	2907	212	-2901	3prime_fragment	FALSE	canonical	1	4	junction_8	3.37956914462566	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTGGACTGACCTAGAG	NA	False	NA	NA	False	AGTAAA	-14	NA	119377463	119349892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_119351207_119354003_119354196_119355052_119355197_119359164_119359246_119359326_119359432_119360569_119360657_119363922_119363982_119369228_119369357_119369603_119369659_119370504_119370574_119371839_119372026_119377269
transcript_77025.known	chr2	+	2609	7	FSM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	25.1197133741609	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTGAGTTTTACCCGG	NA	False	NA	NA	False	AATAAA	-25	NA	119378177	119417508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
transcript_77028.known	chr2	+	1381	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	178.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTTGGACAGATTTT	NA	False	NA	NA	False	TATAAA	-29	NA	119424777	119431227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119424916_119426739_119426824_119430068
transcript_7703.known	chr1	+	2246	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_7	21.6248156769306	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGCTACCTTTGTCT	NA	False	NA	6	True	AATAAA	-15	NA	191058108	191083111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
transcript_77030.known	chr2	+	8300	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	41.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGTTGTTGCTTTTAA	NA	False	NA	24	True	AATAAA	-30	NA	119424783	119437983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119424916_119426739_119426993_119430068
transcript_77055.known	chr2	+	2960	11	FSM	ENSMUSG00000027306.16	ENSMUST00000068225.15	2960	11	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_3	141.2501327433	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCTATAGTTCAGTAC	NA	False	NA	NA	False	AATAAA	-21	NA	119448778	119480641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
transcript_77057.known	chr2	+	3526	10	FSM	ENSMUSG00000027306.16	ENSMUST00000028771.8	3526	10	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	379.300265433633	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAACTAAAAAATATTGC	NA	False	NA	NA	False	NA	NA	NA	119449197	119481725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
transcript_77060.known	chr2	-	1082	6	FSM	ENSMUSG00000072980.4	ENSMUST00000123818.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_4	35.3870032639103	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTGCTTATGTAAAATA	7480	False	NA	NA	False	NA	NA	NA	119448950	119440451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
transcript_77066.known	chr2	-	1778	5	FSM	ENSMUSG00000072980.4	ENSMUST00000110805.3	1778	5	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_4	27.7758888246623	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAATT	7480	False	NA	NA	False	NA	NA	NA	119448950	119439992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334
transcript_77068.known	chr2	-	1451	5	FSM	ENSMUSG00000027305.10	ENSMUST00000028768.2	1451	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	75.083287088406	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCCTCAGCCTTTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	119493279	119485931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493089
transcript_77070.nic	chr2	-	1342	5	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	1	8	junction_4	132.411055052061	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493315	119485926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493239
transcript_77071.known	chr2	-	1308	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110802.8	1308	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	88.8453712919249	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493260
transcript_77075.known	chr2	+	4664	18	FSM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_14	16.8134482341515	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGGTCCAAAGCTTGCA	NA	False	NA	NA	False	AATAAA	-25	NA	119505548	119565888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119505762_119522596_119522708_119531598_119531747_119535919_119536125_119541445_119541561_119542489_119542602_119550646_119550783_119551555_119551734_119555305_119555389_119557197_119557286_119557373_119557482_119558018_119558097_119558875_119558998_119559159_119559218_119560374_119560453_119561135_119561232_119562884_119562997_119563265
transcript_77078.nic	chr2	+	728	4	ISM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	-51	29764	-51	-6819	5prime_fragment	FALSE	canonical	3	115	junction_3	4.64279609239471	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCTGTCTGTACACTTA	NA	False	NA	NA	False	NA	NA	NA	119505497	119536124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_119505762_119522596_119522708_119531598_119531747_119535919
transcript_77079.nic	chr2	+	348	3	ISM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	16	34250	12	8936	5prime_fragment	FALSE	canonical	3	118	junction_1	4	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAGAAAAGTAGAGAAGAAA	NA	False	NA	15	True	NA	NA	NA	119505564	119531638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_119505762_119522596_119522708_119531598
transcript_7708.known	chr1	-	3088	13	FSM	ENSMUSG00000026626.12	ENSMUST00000067976.9	3088	13	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_3	33.6760506723827	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTTGCTCTTTTGTCT	NA	False	NA	-4	True	AATAAA	-24	NA	191129238	191084171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191085307_191086070_191086173_191086727_191086856_191086938_191087059_191087219_191087271_191088530_191088585_191089083_191089193_191089988_191090049_191091121_191091253_191094445_191094539_191100837_191100940_191104666_191104864_191128432
transcript_77080.nic	chr2	+	375	2	ISM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	-51	43181	-51	5	5prime_fragment	FALSE	canonical	3	118	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGTGGAGGAGTTAGG	NA	False	NA	NA	False	NA	NA	NA	119505497	119522707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_119505762_119522596
transcript_77086.known	chr2	+	1818	7	FSM	ENSMUSG00000027296.8	ENSMUST00000028758.8	1818	7	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	9.41039614232874	519	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGCCTCCTCCCCTTCA	NA	False	NA	23	True	AATAAA	-24	NA	119572817	119581744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119573343_119579670_119579768_119579842_119580060_119580153_119580359_119580574_119580677_119580957_119581030_119581144
transcript_77094.known	chr2	-	3080	20	FSM	ENSMUSG00000027297.16	ENSMUST00000028759.13	3080	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	10.8208785568632	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCAGTTCTCTGAGTGA	NA	False	NA	-10	True	NA	NA	NA	119590912	119581806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119582416_119582546_119582638_119582711_119582847_119582977_119583080_119583175_119583269_119583406_119583505_119583594_119583725_119583907_119583973_119584095_119584187_119584652_119584846_119585058_119585155_119585611_119585765_119586095_119586195_119588459_119588643_119588727_119588885_119589004_119589143_119589236_119589388_119589775_119589948_119590037_119590182_119590732
transcript_77100.known	chr2	-	2232	14	FSM	ENSMUSG00000027297.16	ENSMUST00000182203.3	2232	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	7.17243243134772	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTCAGTTCTCTGAGT	NA	False	NA	-12	True	NA	NA	NA	119589006	119581808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119582416_119582546_119582638_119582711_119582847_119582977_119583080_119583175_119583269_119583406_119583505_119583594_119583725_119583907_119583973_119584095_119584187_119584652_119584846_119585058_119585155_119585611_119585765_119586095_119586195_119588727
transcript_77113.known	chr2	-	2299	11	FSM	ENSMUSG00000027297.16	ENSMUST00000134295.2	2299	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	8.63712915267567	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTCTTCAGTTCTCTGA	NA	False	NA	-14	True	NA	NA	NA	119589000	119581810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119582416_119582546_119583080_119583175_119583269_119583406_119583505_119583907_119583973_119584095_119584187_119584652_119584846_119585058_119585155_119585611_119585765_119586095_119586195_119588727
transcript_77115.nic	chr2	-	2712	10	NIC	ENSMUSG00000027297.16	novel	2240	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	14	junction_9	5.33333333333333	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCAGTTCTCTGAGTGA	NA	False	NA	-10	True	NA	NA	NA	119589006	119581806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_119582416_119582546_119583080_119583175_119583269_119583406_119583973_119584095_119584187_119584652_119584846_119585058_119585155_119585611_119585765_119586095_119586195_119588727
transcript_7713.known	chr1	-	4212	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_7	26.7651349516417	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTGGAAGAGTGTGTT	NA	False	NA	-6	True	NA	NA	NA	191307656	191269476	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
transcript_77130.known	chr2	-	4813	26	FSM	ENSMUSG00000034032.16	ENSMUST00000099529.9	4813	26	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_25	84.4691091464803	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACTGTTTTGTCACAT	473	False	NA	-1	True	AATAAA	-21	NA	119618009	119594439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617895
transcript_77131.nic	chr2	-	5092	26	NIC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	-297	0	combination_of_known_junctions	FALSE	canonical	3	84	junction_25	88.1886704741601	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGATCTGGACTGTTTT	167	False	NA	-8	True	AATAAA	-14	NA	119618315	119594446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617915
transcript_77143.known	chr2	-	4744	25	FSM	ENSMUSG00000034032.16	ENSMUST00000048493.12	4744	25	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_24	70.0848691865005	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGACTGTTTTGTCACA	464	False	NA	-2	True	AATAAA	-20	NA	119618018	119594440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
transcript_77144.nic	chr2	-	4994	25	NIC	ENSMUSG00000034032.16	novel	5458	26	NA	NA	-276	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_24	80.8678191041818	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGATCTGGACTGTTTT	188	False	NA	-8	True	AATAAA	-14	NA	119618294	119594446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617915
transcript_77183.known	chr2	-	4714	23	FSM	ENSMUSG00000034032.16	ENSMUST00000139311.8	4714	23	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_22	84.1204002340526	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATTGGAG	482	False	NA	NA	False	NA	NA	NA	119618000	119597339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617895
transcript_772.known	chr1	-	1860	3	FSM	ENSMUSG00000042215.9	ENSMUST00000044691.9	1860	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	4.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	-5	True	NA	NA	NA	33796876	33784564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_33786098_33787297_33787408_33796659
transcript_77222.known	chr2	-	1385	6	FSM	ENSMUSG00000034032.16	ENSMUST00000156506.8	1385	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	119.666870937616	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAAAAATCCTCAAA	487	False	NA	NA	False	NA	NA	NA	119617995	119608131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
transcript_77230.known	chr2	+	4460	20	FSM	ENSMUSG00000027298.18	ENSMUST00000110783.8	4460	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	82.8291637052482	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTTTTGTTTTTTACT	9484	False	NA	NA	False	AATAAA	-22	NA	119628213	119648585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119628236_119628706_119629526_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
transcript_77234.nic	chr2	+	3740	19	NIC	ENSMUSG00000027298.18	novel	3529	8	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	57.453819351064	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTTTTGTTTTTTACT	NA	False	NA	NA	False	AATAAA	-22	NA	119629775	119648585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_119629897_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
transcript_77237.known	chr2	+	3989	19	FSM	ENSMUSG00000027298.18	ENSMUST00000028763.10	3989	19	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_12	19.4854329889133	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTTTTGTTTTTTACT	NA	False	NA	NA	False	AATAAA	-22	NA	119629994	119648585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119630365_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
transcript_77255.nnic	chr2	+	3544	9	NNC	ENSMUSG00000033943.16	novel	825	2	NA	NA	-24725	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	30.7235658737719	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAGAAGAGAAAGAAG	7927	False	NA	12	True	NA	NA	NA	119702983	119757172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_119703073_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859
transcript_77258.nnic	chr2	+	3697	9	NNC	ENSMUSG00000033943.16	novel	825	2	NA	NA	-24725	-139	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	21.9544984001001	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGTTGGTTAAAGGGGG	7927	False	NA	NA	False	AAGAAA	-2	NA	119702983	119757033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_119703365_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859
transcript_77259.nnic	chr2	+	3836	9	NNC	ENSMUSG00000033943.16	novel	825	2	NA	NA	-24725	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	21.9544984001001	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAGAAGAGAAAGAAG	7927	False	NA	12	True	NA	NA	NA	119702983	119757172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_119703365_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859
transcript_77261.nic	chr2	+	3594	9	ISM	ENSMUSG00000033943.16	ENSMUST00000156510.2	6995	21	-97	34103	-20	0	5prime_fragment	FALSE	canonical	3	29	junction_1	30.7235658737719	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAGAAGAGAAAGAAG	NA	False	NA	12	True	NA	NA	NA	119727688	119757172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_119727828_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859
transcript_77277.known	chr2	+	2763	3	FSM	ENSMUSG00000033943.16	ENSMUST00000141776.8	2763	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	35.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	119727712	119748431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119727828_119733086_119734215_119746911
transcript_7728.known	chr1	-	1787	7	FSM	ENSMUSG00000037474.14	ENSMUST00000194064.2	1787	7	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_3	27.2621023074564	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAACTGAG	NA	False	NA	NA	False	TTTAAA	-8	NA	191307623	191292499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
transcript_77285.known	chr2	+	6942	30	FSM	ENSMUSG00000033902.13	ENSMUST00000066058.8	6942	30	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	4.52526268609031	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGAAGAGCGCCGCTT	115	False	NA	48	True	AATAAA	-29	NA	119803179	119857889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119803650_119828962_119829055_119841223_119841287_119841482_119841541_119842413_119842585_119843073_119843212_119843392_119843576_119844099_119844261_119845103_119845294_119845823_119845971_119846173_119846350_119847260_119847353_119847620_119847747_119848061_119848133_119848236_119848359_119848779_119848856_119848968_119849081_119849402_119849467_119849706_119849842_119850032_119850170_119850358_119850415_119851564_119851802_119852211_119852379_119852570_119852717_119852817_119853013_119853176_119853262_119853512_119853797_119854023_119854621_119854998_119855085_119855584
transcript_77299.nic	chr2	+	1292	8	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	46.6533022651655	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857959	119863075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
transcript_773.known	chr1	-	378	2	FSM	ENSMUSG00000042215.9	ENSMUST00000187602.2	378	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCTGGGCCGGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	33796822	33785882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_33786098_33796659
transcript_7730.known	chr1	-	4300	11	FSM	ENSMUSG00000037474.14	ENSMUST00000193977.6	4300	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	143.039330255703	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	191307625	191281940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300517_191300606_191300669_191301778_191301878_191302690_191302817_191307460
transcript_77301.nic	chr2	+	1448	8	ISM	ENSMUSG00000033852.17	ENSMUST00000162393.8	5092	27	-12	10439	-12	-2399	5prime_fragment	FALSE	canonical	3	18	junction_5	45.292248289327	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857961	119863075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119861982_119862133_119862321_119862482_119862594
transcript_77302.known	chr2	+	1373	8	FSM	ENSMUSG00000098789.8	ENSMUST00000044675.5	1373	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	32.3128836376389	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857963	119863075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
transcript_77307.nnic	chr2	+	1298	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	49.2084568161025	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857961	119863075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862321_119862482_119862594
transcript_77308.nnic	chr2	+	1279	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	49.0736408087093	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857961	119863075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119862055_119862133_119862321_119862482_119862594
transcript_77321.known	chr2	-	3730	6	FSM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	18.4217263034711	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGCACAGTTCCTAGAC	NA	False	NA	NA	False	AATAAA	-20	NA	119985087	119919655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119922166_119927443_119927609_119932500_119932914_119958072_119958171_119967379_119967557_119984720
transcript_77327.nic	chr2	-	1132	5	ISM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	-15	7891	-15	5154	5prime_fragment	FALSE	canonical	3	216	junction_1	20.1292697334007	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAGCGAGAACTTATCT	NA	False	NA	NA	False	AAGAAA	-2	NA	119985102	119927546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_119927609_119932500_119932914_119958072_119958171_119967379_119967557_119984720
transcript_77333.known	chr2	-	4477	20	FSM	ENSMUSG00000050211.15	ENSMUST00000090071.5	4477	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	6.9306017774238	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTCATCTGTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	120075816	119996892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_119998532_119998952_119999137_120000509_120000677_120001588_120001793_120002198_120002307_120004133_120004272_120004733_120004849_120007202_120007426_120011897_120012035_120013184_120013321_120015051_120015090_120015480_120015568_120015669_120015831_120016827_120016892_120017676_120017720_120018990_120019032_120019884_120020017_120021674_120021812_120030693_120030767_120075166
transcript_77337.known	chr2	-	3116	20	FSM	ENSMUSG00000046971.8	ENSMUST00000054651.8	3116	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	4.71515503251053	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	9959	False	NA	NA	False	AATAAA	-22	NA	120144646	120130446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547_120133656_120133733_120133872_120134056_120134172_120135033_120135257_120135482_120135620_120137705_120137845_120138043_120138082_120138454_120138569_120138685_120138850_120141497_120141565_120141959_120142003_120142244_120142286_120142585_120142712_120142787_120142925_120143527_120143601_120144426
transcript_77344.nic	chr2	-	1007	2	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	11137	9	11137	0	3prime_fragment	FALSE	canonical	2	16	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	5885	False	NA	NA	False	AATAAA	-22	NA	120131721	120130446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_120131110_120131377
transcript_77346.known	chr2	-	4055	26	FSM	ENSMUSG00000027291.16	ENSMUST00000129857.8	4055	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	82.3630402547162	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAAACAGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	120183602	120147291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120148591_120149946_120150039_120151132_120151268_120151367_120151518_120152090_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159197_120163870_120164001_120168946_120169068_120169161_120169283_120169799_120169984_120172464_120172558_120173673_120173773_120174605_120174701_120176098_120176142_120176808_120176874_120179566_120179637_120180644_120180711_120183395
transcript_77347.known	chr2	-	4339	25	FSM	ENSMUSG00000027291.16	ENSMUST00000028752.8	4339	25	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_15	25.6031410833385	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCTTGAGCCTCCCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	120183606	120146941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120148591_120149946_120150039_120151132_120151268_120151367_120151518_120152090_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159197_120163870_120164001_120168946_120169068_120169161_120169283_120169799_120169984_120172464_120172558_120173673_120173773_120174605_120174701_120176098_120176142_120176808_120176874_120180644_120180711_120183395
transcript_77359.nic	chr2	-	2348	21	ISM	ENSMUSG00000027291.16	ENSMUST00000028752.8	4339	25	-50	5164	-38	230	5prime_fragment	FALSE	canonical	3	237	junction_11	25.6317673990695	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGCAACAAAGATGTAAG	NA	False	NA	NA	False	AAAACA	-3	NA	120183656	120152105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159197_120163870_120164001_120168946_120169068_120169161_120169283_120169799_120169984_120172464_120172558_120173673_120173773_120174605_120174701_120176098_120176142_120176808_120176874_120180644_120180711_120183395
transcript_7736.nnic	chr1	+	4239	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	-40	-73	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	65.9688562884032	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTGTGTTTTACCTTTT	8244	False	NA	25	True	AATAAA	-14	NA	191307798	191354785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276_191353914_191353955
transcript_77365.known	chr2	+	4780	24	FSM	ENSMUSG00000062646.13	ENSMUST00000135074.2	4780	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	3.61680597271051	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCATGGTCTTTGCT	NA	False	NA	10	True	NA	NA	NA	120235248	120292181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120249838_120249967_120252505_120252686_120254179_120254226_120258210_120258278_120259281_120259379_120261035_120261217_120261421_120261576_120264102_120264339_120265743_120265871_120267102_120267183_120269780_120269925_120271984_120272082_120274618_120274721_120276779_120277024_120278868_120278934_120281301_120281379_120283073_120283149_120286473_120286588_120287688_120287802_120288523_120288628_120290296
transcript_7737.nnic	chr1	+	5215	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	65.9688562884032	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTTGAGTGTGAAAGTAAC	8284	False	NA	3	True	AATAAA	-13	NA	191307838	191355801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276_191353914_191353955
transcript_77374.known	chr2	+	2622	21	FSM	ENSMUSG00000079110.13	ENSMUST00000028748.14	2622	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.41039415863879	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTTATTAGCATTTCTCA	NA	False	NA	NA	False	AATAAA	-28	NA	120307389	120335399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120307712_120311163_120311234_120312590_120312710_120314971_120315106_120315661_120315831_120318554_120318639_120320148_120320235_120321434_120321513_120322274_120322436_120325252_120325423_120325716_120325729_120326345_120326555_120327458_120327496_120332583_120332662_120332867_120332926_120333009_120333075_120333456_120333526_120333613_120333693_120333829_120333947_120334576_120334636_120334953
transcript_77386.known	chr2	-	2874	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090042.12	2874	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	102.185508348021	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234550	120185792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
transcript_77390.known	chr2	-	2897	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090046.12	2897	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	114.209531889923	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234570	120185792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
transcript_77393.known	chr2	-	2160	19	FSM	ENSMUSG00000033808.17	ENSMUST00000124806.8	2160	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	137.050871423806	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGAATGGGGTGGGCAGA	NA	False	NA	NA	False	NA	NA	NA	120234558	120186453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120234385
transcript_774.nnic	chr1	-	4084	16	NNC	ENSMUSG00000042197.14	novel	3958	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	97.3165738995961	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGAGGAAATTTTTTCTA	NA	False	NA	-2	True	AATAAA	-17	NA	33853678	33800625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_33801291_33803594_33803651_33804924_33804991_33808801_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
transcript_77412.known	chr2	-	5125	7	FSM	ENSMUSG00000033808.17	ENSMUST00000143182.2	5125	7	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	23.2426810463471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAATAAGTAAAAAA	NA	False	NA	NA	False	ATTAAA	-42	NA	120234562	120211784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
transcript_77417.known	chr2	+	3099	5	FSM	ENSMUSG00000062646.13	ENSMUST00000154574.8	3099	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	3.77491721763537	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCACTGAGTGAAACAATG	NA	False	NA	NA	False	ATTAAA	-13	NA	120234376	120254140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120249838_120249967_120252505
transcript_7742.known	chr1	+	5347	20	FSM	ENSMUSG00000037461.11	ENSMUST00000045450.7	5347	20	0	0	0	0	multi-exon	FALSE	canonical	2	189	junction_14	33.0659544051011	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGTTGAGTGTGAAAGTAA	8193	False	NA	2	True	AATAAA	-12	NA	191307747	191355800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
transcript_77420.known	chr2	+	1477	4	FSM	ENSMUSG00000062646.13	ENSMUST00000143409.8	1477	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	5.43650214343336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGTGTCAGGATCTTTG	NA	False	NA	NA	False	ATTAAA	-15	NA	120234818	120246132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120245549
transcript_77422.known	chr2	-	9085	22	FSM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	0	0	0	0	multi-exon	FALSE	canonical	3	679	junction_17	176.960671803312	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTATTTGTCTGCATA	9821	False	NA	-6	True	AATAAA	-21	NA	120394288	120337300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
transcript_77429.nic	chr2	-	6810	20	NIC	ENSMUSG00000027288.17	novel	9085	22	NA	NA	-56	0	intron_retention	FALSE	canonical	3	389	junction_17	196.49011591164	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTATTTGTCTGCATA	9729	False	NA	-6	True	AATAAA	-21	NA	120394380	120337300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120376323_120376386_120385711_120385797_120394167
transcript_77432.nic	chr2	-	4016	20	NIC	ENSMUSG00000027288.17	novel	9085	22	NA	NA	-56	0	intron_retention	FALSE	canonical	3	389	junction_17	196.49011591164	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGTGCAGTGTCTCACT	9729	False	NA	56	True	TTTAAA	-24	NA	120394380	120340094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120376323_120376386_120385711_120385797_120394167
transcript_77434.nic	chr2	-	3952	20	NIC	ENSMUSG00000027288.17	novel	9085	22	NA	NA	-56	-64	intron_retention	FALSE	canonical	3	389	junction_17	196.49011591164	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTTAATTCCTCCTTT	9729	False	NA	-8	True	AATAGA	-11	NA	120394380	120340158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120376323_120376386_120385711_120385797_120394167
transcript_77435.nic	chr2	-	3797	20	NIC	ENSMUSG00000027288.17	novel	9085	22	NA	NA	2	-161	intron_retention	FALSE	canonical	3	389	junction_17	196.49011591164	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCCAGTTTGACCCTAAT	9787	False	NA	-105	True	ATTAAA	-19	NA	120394322	120340255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120376323_120376386_120385711_120385797_120394167
transcript_77445.known	chr2	-	4375	10	FSM	ENSMUSG00000027288.17	ENSMUST00000141874.8	4375	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	347.938372576396	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGTTTCATTGTTCCCT	9814	False	NA	-3	True	AATAAA	-43	NA	120394295	120356743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991_120366161_120369775_120369974_120376323_120376383_120385711_120385797_120394167
transcript_77451.nic	chr2	-	2096	8	NIC	ENSMUSG00000027288.17	novel	4375	10	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	389	junction_5	258.657365356298	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGTTTCATTGTTCCCT	9729	False	NA	-3	True	AATAAA	-43	NA	120394380	120356743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120376323_120376386_120385711_120385797_120394167
transcript_77454.nic	chr2	-	3400	7	ISM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	-92	23653	-56	1413	5prime_fragment	FALSE	canonical	3	679	junction_2	200.628803183059	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAGGAAAATTAAAGGGAA	9729	False	NA	NA	False	AATAAA	-1	NA	120394380	120360953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_120360999_120362075_120362704_120363991_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
transcript_77458.nic	chr2	-	1033	5	NIC	ENSMUSG00000027288.17	novel	9085	22	NA	NA	-56	1413	combination_of_known_junctions	FALSE	canonical	3	389	junction_2	313.216678195782	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAGGAAAATTAAAGGGAA	9729	False	NA	NA	False	AATAAA	-1	NA	120394380	120360953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_120360999_120362075_120362704_120376323_120376386_120385711_120385797_120394167
transcript_77459.nic	chr2	-	2833	5	ISM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	-92	26585	-56	-1519	5prime_fragment	FALSE	canonical	3	681	junction_1	204.702680734767	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATTGTAGATGTCTGC	9729	False	NA	NA	False	ATTAAA	-42	NA	120394380	120363885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
transcript_77460.nic	chr2	-	2589	5	ISM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	-92	26829	-56	1638	5prime_fragment	FALSE	canonical	3	681	junction_1	204.702680734767	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATGAAACAGAAAAGGAAT	9729	False	NA	NA	False	NA	NA	NA	120394380	120364129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
transcript_77465.known	chr2	-	691	4	FSM	ENSMUSG00000027288.17	ENSMUST00000147353.2	691	4	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_2	449.381797584192	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTCAACTTGGTTCCTT	9794	False	NA	NA	False	CATAAA	-14	NA	120394315	120365900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120366161_120369775_120369974_120385711_120385797_120394167
transcript_77466.nic	chr2	-	554	4	ISM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	-92	32479	-56	-3879	5prime_fragment	FALSE	canonical	3	793	junction_1	163.709091582192	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAAGTTGGTTTGTTT	9729	False	NA	71	True	AATACA	-18	NA	120394380	120369779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_120369974_120376323_120376386_120385711_120385797_120394167
transcript_77467.nic	chr2	-	470	4	ISM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	-92	32563	-56	-3963	5prime_fragment	FALSE	canonical	3	793	junction_1	163.709091582192	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGATGATGGAAAGGAA	9729	False	NA	-13	True	NA	NA	NA	120394380	120369863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_120369974_120376323_120376386_120385711_120385797_120394167
transcript_77470.known	chr2	+	2658	8	FSM	ENSMUSG00000027287.15	ENSMUST00000028743.10	2658	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	118.449334729914	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398171	120431736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120398243_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
transcript_77475.known	chr2	+	2723	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398151	120431736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
transcript_77485.known	chr2	+	3154	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	AATAAA	-16	NA	120439863	120452041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
transcript_77490.known	chr2	-	1962	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102497.10	1962	6	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_5	44.5394207416307	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439836	120434718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439595
transcript_77491.known	chr2	-	1848	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102496.8	1848	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	68.2800117164606	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439796	120434718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439669
transcript_77492.nic	chr2	-	1830	6	NIC	ENSMUSG00000027286.17	novel	1961	6	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	69.0582362937253	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439863	120434718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439754
transcript_77493.known	chr2	-	1961	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102499.8	1961	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	57.8321709777525	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120440001	120434718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439761
transcript_77497.known	chr2	+	1430	5	FSM	ENSMUSG00000027285.14	ENSMUST00000028741.14	1430	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	111.162887242101	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAATTGAATGTTCC	NA	False	NA	NA	False	TTTAAA	-4	NA	120439863	120450387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120440027_120442818_120442912_120446335_120446469_120448353_120448463_120449455
transcript_77509.nic	chr2	-	4367	28	NIC	ENSMUSG00000027284.17	novel	6384	28	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_26	17.8771144441848	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGGCTGTTCTCCCTG	6076	False	NA	NA	False	AATAAA	-15	NA	120562037	120548666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560984_120561182_120561674_120561892
transcript_77510.nic	chr2	-	4370	28	NIC	ENSMUSG00000027284.17	novel	6384	28	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_26	16.0161955070022	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATGGCTGTTCTCCCTG	6076	False	NA	NA	False	AATAAA	-15	NA	120562037	120548666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560987_120561182_120561674_120561892
transcript_77521.known	chr2	-	5996	28	FSM	ENSMUSG00000027284.17	ENSMUST00000110700.2	5996	28	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_27	22.3478547470889	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAACTTTGCTTGAATAT	6114	False	NA	NA	False	NA	NA	NA	120561999	120547002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560984_120561182_120561669_120561884
transcript_77522.known	chr2	-	11152	16	FSM	ENSMUSG00000090100.8	ENSMUST00000085840.11	11152	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_14	10.6048207067457	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGCTATTTGTGTGA	NA	False	NA	3	True	AATAAA	-21	NA	120680899	120563296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120570676_120575499_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120655722_120655797_120680536
transcript_77524.known	chr2	-	11066	15	FSM	ENSMUSG00000090100.8	ENSMUST00000057135.14	11066	15	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_14	10.4060422008425	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGCTATTTGTGTGA	NA	False	NA	3	True	AATAAA	-21	NA	120680887	120563296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120570676_120575499_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120680536
transcript_77525.known	chr2	-	3093	15	FSM	ENSMUSG00000090100.8	ENSMUST00000143051.8	3093	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_13	10.0369216355597	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAATAAGCTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	120680871	120576151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953_120653090_120655722_120655797_120680536
transcript_77527.known	chr2	-	7768	47	FSM	ENSMUSG00000027272.6	ENSMUST00000028728.6	7768	47	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_19	10.4276243563166	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTCATGTTTGGGCATT	NA	False	NA	NA	False	AATAAA	-37	NA	120801196	120690749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_120693273_120694798_120694901_120696870_120697042_120698706_120698785_120701469_120701527_120703604_120703714_120705846_120705981_120707439_120707540_120711511_120711663_120712701_120712770_120720256_120720354_120722552_120722609_120723548_120723698_120725552_120725647_120726976_120727075_120730981_120731132_120732082_120732177_120734474_120734681_120737324_120737507_120739902_120739990_120741582_120741693_120742478_120742579_120745347_120745503_120745848_120745898_120746904_120747008_120748301_120748355_120751858_120751984_120754612_120754677_120756435_120756538_120756774_120756841_120759866_120759978_120760201_120760264_120761326_120761508_120764784_120764914_120765696_120765797_120771447_120771606_120772957_120773057_120775131_120775221_120776314_120776423_120776754_120776879_120777102_120777166_120778238_120778378_120780520_120780652_120786090_120786202_120791565_120791645_120793844_120794102_120801002
transcript_77534.known	chr2	+	2921	14	FSM	ENSMUSG00000054484.15	ENSMUST00000067582.14	2921	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	3.93136379667097	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGATCTGCAATGTTGATAA	NA	False	NA	NA	False	AAGAAA	-10	NA	120807497	120838333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120807960_120808179_120808292_120809611_120809750_120810953_120811000_120814814_120814957_120817063_120817189_120817316_120817440_120820811_120820968_120823958_120824119_120826886_120827001_120829554_120829640_120832977_120833083_120835162_120835282_120837299
transcript_77536.known	chr2	+	1569	11	FSM	ENSMUSG00000023572.17	ENSMUST00000060455.15	1569	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_6	15.0811140172071	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTCCTCTGAAGT	NA	False	NA	21	True	AATAAA	-30	NA	120838883	120847385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120839091_120839198_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
transcript_77539.known	chr2	+	1632	10	FSM	ENSMUSG00000023572.17	ENSMUST00000099489.9	1632	10	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	15.8464857653396	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTCCTCTGAAGT	NA	False	NA	21	True	AATAAA	-30	NA	120838928	120847385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
transcript_77542.nnic	chr2	+	2583	12	NNC	ENSMUSG00000027259.16	novel	2298	10	NA	NA	233	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.0611711732266	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120971234	120987159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_120971370_120971719_120971803_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_77543.nic	chr2	+	2624	11	NIC	ENSMUSG00000027259.16	novel	2477	11	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_1	16.3572613844739	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970888	120987159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_120971148_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_77546.known	chr2	+	2477	11	FSM	ENSMUSG00000027259.16	ENSMUST00000119031.8	2477	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	26.5369553641709	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970978	120987159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120971091_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_77548.known	chr2	+	2471	10	FSM	ENSMUSG00000027259.16	ENSMUST00000028702.10	2471	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	35.8670384119521	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTGAATTGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	120970912	120987161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120971148_120972573_120972785_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_7755.known	chr1	+	3069	19	FSM	ENSMUSG00000037461.11	ENSMUST00000194877.6	3069	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	68.875894831856	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATAACCTGGCTCTCA	8299	False	NA	NA	False	NA	NA	NA	191307853	191353758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_191308064_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
transcript_77551.known	chr2	+	2872	4	FSM	ENSMUSG00000027259.16	ENSMUST00000146750.8	2872	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	36.6272515424725	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAGAGAAGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	120970924	120975993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_120971091_120972573_120972785_120973004_120973136_120973629
transcript_77555.known	chr2	-	9621	28	FSM	ENSMUSG00000043909.17	ENSMUST00000110648.8	9621	28	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_12	23.0142199734784	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTTGTTCTAACGTG	8072	False	NA	NA	False	NA	NA	NA	121101888	121025318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038986_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
transcript_77562.known	chr2	+	2887	19	FSM	ENSMUSG00000027263.13	ENSMUST00000144076.8	2887	19	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_18	58.617614173199	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGGCCTTGTAGAACT	NA	False	NA	2	True	AATAAA	-14	NA	121001720	121029250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
transcript_77565.known	chr2	+	2915	19	FSM	ENSMUSG00000027263.13	ENSMUST00000138601.8	2915	19	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_18	57.833947056195	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGGCCTTGTAGAACT	NA	False	NA	2	True	AATAAA	-14	NA	121001689	121029250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
transcript_77574.known	chr2	+	4206	18	FSM	ENSMUSG00000027263.13	ENSMUST00000039541.12	4206	18	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_12	42.7635326321784	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	3	True	AATAAA	-15	NA	121001695	121029251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
transcript_77579.known	chr2	+	4250	18	FSM	ENSMUSG00000027263.13	ENSMUST00000110658.8	4250	18	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_12	41.5047418810901	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	3	True	AATAAA	-15	NA	121001648	121029251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
transcript_7761.known	chr1	+	4002	18	FSM	ENSMUSG00000037461.11	ENSMUST00000194785.2	4002	18	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_1	67.3081022079613	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTGGTTTTTGTTTTTT	8319	False	NA	98	True	TTTAAA	-3	NA	191307873	191354858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_191308064_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
transcript_77626.nic	chr2	-	3003	3	ISM	ENSMUSG00000050619.15	ENSMUST00000163766.8	3611	6	-400	4941	-400	-496	5prime_fragment	FALSE	canonical	3	33	junction_1	2	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCATTATCTTTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	121002006	120996117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_120997200_120999679_120999885_121000290
transcript_77632.known	chr2	-	1442	10	FSM	ENSMUSG00000033526.17	ENSMUST00000131661.8	1442	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	33.734255586866	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGATTCAAAAGTCAAA	NA	False	NA	NA	False	TTTAAA	-7	NA	121185556	121177528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185516
transcript_77633.known	chr2	+	11825	7	FSM	ENSMUSG00000027254.14	ENSMUST00000094639.10	11825	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3.5939764421413	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGATCTCTGCTAATTGT	NA	False	NA	NA	False	NA	NA	NA	121120080	121141313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121120354_121121200_121121303_121129077_121129161_121129386_121129528_121129749_121137854_121137995_121138217_121138412
transcript_77636.known	chr2	-	2485	18	FSM	ENSMUSG00000033526.17	ENSMUST00000150081.8	2485	18	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_17	17.2317804087495	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	121185792	121170838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
transcript_77637.known	chr2	-	5533	30	FSM	ENSMUSG00000033526.17	ENSMUST00000052029.10	5533	30	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_29	23.8477134414446	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGGGGTGTGACTCCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	121181498	121141041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181131_121181397
transcript_77639.known	chr2	+	1518	10	FSM	ENSMUSG00000000308.15	ENSMUST00000078222.9	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	32.5602954456217	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	801	False	NA	32	True	AGTAAA	-20	NA	121188256	121194218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121188341_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
transcript_77642.known	chr2	+	1620	9	FSM	ENSMUSG00000000308.15	ENSMUST00000000317.13	1620	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_3	17.8881070826401	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	1635	False	NA	32	True	AGTAAA	-20	NA	121189090	121194218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
transcript_77655.known	chr2	+	2770	13	FSM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	0	0	0	0	multi-exon	FALSE	canonical	3	3731	junction_4	277.160252481404	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAATCTTGTCCATAATT	NA	False	NA	NA	False	ATTAAA	-26	NA	121244255	121269168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
transcript_77686.nic	chr2	+	1341	6	ISM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	-398	6959	-398	-408	5prime_fragment	FALSE	canonical	3	3731	junction_4	311.383621919972	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCAGTGGCAAGATCAAG	NA	False	NA	NA	False	AAGAAA	-2	NA	121243857	121262209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132
transcript_77691.known	chr2	-	1674	11	FSM	ENSMUSG00000027246.13	ENSMUST00000116432.2	1674	11	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	7.95235814082842	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	-17	True	ATTAAA	-15	NA	121273082	121269507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270640_121270714_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
transcript_77698.known	chr2	+	961	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	0	0	0	0	multi-exon	FALSE	canonical	3	4276	junction_2	190.202231556017	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTTCCCCTTGGATCTG	NA	False	NA	NA	False	NA	NA	NA	121287443	121289153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
transcript_777.nnic	chr1	-	3876	16	NNC	ENSMUSG00000042197.14	novel	3958	15	NA	NA	-2	-208	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	97.3165738995961	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTTTTTTCCAGAAATT	NA	False	NA	-15	True	AATAAA	-13	NA	33853678	33800833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_33801291_33803594_33803651_33804924_33804991_33808801_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
transcript_77701.known	chr2	+	525	3	FSM	ENSMUSG00000074884.13	ENSMUST00000099475.12	525	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	2874	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279863	121281535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121279923_121280455_121280565_121281178
transcript_77702.known	chr2	+	3056	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	0	0	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	722	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTTCAGTGAGTCCTGG	NA	False	NA	NA	False	AATAAA	-14	NA	121279675	121283901	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121279923_121280455_121280565_121281201
transcript_77704.known	chr2	+	724	3	FSM	ENSMUSG00000027245.12	ENSMUST00000131870.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	4570	junction_2	83	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTTTTTTTTCTTCAG	NA	False	NA	20	True	AATAAA	-15	NA	121287604	121288787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121287773_121288126_121288525_121288629
transcript_77705.known	chr2	+	3105	2	FSM	ENSMUSG00000074884.13	ENSMUST00000134412.2	3105	2	0	0	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGAGCATTCTGGGT	NA	False	NA	3	True	NA	NA	NA	121279848	121283486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121279923_121280455
transcript_77710.known	chr2	-	3362	7	FSM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_3	20.2457128520803	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGTTCCTACTAATCTT	9195	False	NA	NA	False	NA	NA	NA	121304548	121290715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
transcript_77724.known	chr2	-	4198	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGGCACATGCCCATA	NA	False	NA	NA	False	AATAAA	-19	NA	121337146	121322391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
transcript_77733.nic	chr2	-	2657	2	ISM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	-42	8547	-42	-8547	5prime_fragment	FALSE	canonical	3	409	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGTAATGAATAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	121337188	121330938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_121333351_121336943
transcript_77734.nic	chr2	-	636	2	ISM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	-42	10568	-42	-10568	5prime_fragment	FALSE	canonical	3	409	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAGAGGAAAAATGAAGAGA	NA	False	NA	NA	False	AAGAAA	-38	NA	121337188	121332959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_121333351_121336943
transcript_77735.nic	chr2	-	513	2	ISM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	16	10633	16	-10633	5prime_fragment	FALSE	canonical	3	409	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAGGAAGAGATTGACGA	NA	False	NA	NA	False	NA	NA	NA	121337130	121333024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_121333351_121336943
transcript_77737.nnic	chr2	+	3629	14	NNC	ENSMUSG00000027242.15	novel	4170	13	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.000197237362	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	AATAAA	-22	NA	121337171	121375341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374112_121374759
transcript_77738.nnic	chr2	+	3658	14	NNC	ENSMUSG00000027242.15	novel	4170	13	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.000197237362	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	AATAAA	-22	NA	121337171	121375341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374141_121374759
transcript_77739.nnic	chr2	+	3746	14	NNC	ENSMUSG00000027242.15	novel	4170	13	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	15.000197237362	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	AATAAA	-22	NA	121337171	121375341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374229_121374759
transcript_77742.nnic	chr2	+	3629	14	NNC	ENSMUSG00000027242.15	novel	2341	13	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.7213155719746	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	AATAAA	-22	NA	121340272	121375341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374141_121374759
transcript_77743.nnic	chr2	+	3717	14	NNC	ENSMUSG00000027242.15	novel	2341	13	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	15.7213155719746	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	AATAAA	-22	NA	121340272	121375341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374229_121374759
transcript_77744.known	chr2	+	4170	13	FSM	ENSMUSG00000027242.15	ENSMUST00000110602.9	4170	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	14.1958033704801	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	AATAAA	-22	NA	121337263	121375341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121337330_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781
transcript_77747.known	chr2	+	2341	13	FSM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	9.89107341663853	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAATGAAACTATTTTGAT	NA	False	NA	NA	False	NA	NA	NA	121340328	121373490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781
transcript_77755.known	chr2	+	3155	9	FSM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	5.85101486923423	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAACAACCACAACAA	NA	False	NA	NA	False	NA	NA	NA	121337235	121363846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766
transcript_77758.nic	chr2	+	733	5	ISM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	-64	7890	-32	-7314	5prime_fragment	FALSE	canonical	3	42	junction_4	6.13901457890434	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGGATGTCGAAGGT	NA	False	NA	NA	False	AAGAAA	-6	NA	121337171	121355956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932
transcript_77759.nic	chr2	+	838	5	ISM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	-64	7785	-32	-7209	5prime_fragment	FALSE	canonical	3	42	junction_4	6.13901457890434	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTAAGAAGAAATACAAATG	NA	False	NA	NA	False	NA	NA	NA	121337171	121356061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932
transcript_77760.nic	chr2	+	704	5	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	-56	17534	-56	-7314	5prime_fragment	FALSE	canonical	3	27	junction_1	11.2998893799895	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGGATGTCGAAGGT	NA	False	NA	NA	False	AAGAAA	-6	NA	121340272	121355956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932
transcript_77761.nic	chr2	+	809	5	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	-56	17429	-56	-7209	5prime_fragment	FALSE	canonical	3	27	junction_1	11.2998893799895	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTAAGAAGAAATACAAATG	NA	False	NA	NA	False	NA	NA	NA	121340272	121356061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932
transcript_77762.nic	chr2	+	709	4	ISM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	-64	13892	-32	-13316	5prime_fragment	FALSE	canonical	3	43	junction_1	5.73488351136175	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAACAGAAGAGGATGTG	NA	False	NA	NA	False	GATAAA	-28	NA	121337171	121349954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898
transcript_77763.nic	chr2	+	680	4	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	-56	23536	-56	-13316	5prime_fragment	FALSE	canonical	3	27	junction_1	12.9614813968157	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAACAGAAGAGGATGTG	NA	False	NA	NA	False	GATAAA	-28	NA	121340272	121349954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898
transcript_7777.known	chr1	+	7233	8	FSM	ENSMUSG00000026623.17	ENSMUST00000110855.8	7233	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	23.0757404197215	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGGCCTTGTTCTTAA	NA	False	NA	9	True	AATAAA	-18	NA	191449945	191516367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_191450318_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494
transcript_77776.known	chr2	-	2222	14	FSM	ENSMUSG00000027238.18	ENSMUST00000110592.2	2222	14	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_6	7.44049371651923	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGATGATTGCAGTAGTG	NA	False	NA	NA	False	AATAAA	-18	NA	121637473	121378787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121379714_121383818_121383926_121384745_121384815_121386050_121386126_121387797_121387890_121388304_121388369_121393365_121393455_121399373_121399462_121404025_121404150_121406802_121406901_121416386_121416466_121416909_121416953_121422138_121422244_121637210
transcript_77782.known	chr2	+	4215	10	FSM	ENSMUSG00000060227.16	ENSMUST00000078752.10	4215	10	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_8	32.2490309931942	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTAGGGTTGTTTACTGTA	NA	False	NA	NA	False	NA	NA	NA	121697450	121766701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121756041_121756210_121763958
transcript_77784.nnic	chr2	+	2607	10	NNC	ENSMUSG00000060227.16	novel	4215	10	NA	NA	-47	22690	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	76.5927179596366	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGATTGATAAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	121697403	121789391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121763958_121765019_121789195
transcript_77788.known	chr2	+	4032	9	FSM	ENSMUSG00000060227.16	ENSMUST00000110586.10	4032	9	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_8	46.1246612453685	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGACTA	NA	False	NA	NA	False	NA	NA	NA	121697450	121766686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121763958
transcript_77793.nic	chr2	+	828	4	ISM	ENSMUSG00000060227.16	ENSMUST00000135416.8	928	5	-207	3084	-47	2914	5prime_fragment	FALSE	canonical	3	196	junction_3	27.7168220079832	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCAGATCAGTTTTTGCA	NA	False	NA	NA	False	ATTAAA	-4	NA	121697403	121733603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542
transcript_77794.nic	chr2	+	731	3	ISM	ENSMUSG00000060227.16	ENSMUST00000135416.8	928	5	-207	4958	-47	1040	5prime_fragment	FALSE	canonical	3	220	junction_2	21.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACCTACCTTGTCAAGC	NA	False	NA	NA	False	NA	NA	NA	121697403	121731729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121698013_121729278_121729334_121731662
transcript_77799.known	chr2	+	3543	13	FSM	ENSMUSG00000033411.17	ENSMUST00000140570.8	3543	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	109.645134664314	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGCTCTTTCTCAAAAT	NA	False	NA	11	True	AATAAA	-21	NA	121786960	121843096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121787099_121799550_121799761_121807815_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
transcript_77802.nic	chr2	+	2424	8	ISM	ENSMUSG00000033411.17	ENSMUST00000128883.8	1236	9	-538	-413	-53	0	intron_retention	FALSE	canonical	3	361	junction_3	40.3110356085866	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121786428	121824677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826
transcript_77803.nic	chr2	+	960	4	ISM	ENSMUSG00000033411.17	ENSMUST00000131258.8	4290	6	-454	11478	31	-11478	5prime_fragment	FALSE	canonical	3	361	junction_3	50.7302232949507	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACATATAAAGCAAAATG	NA	False	NA	NA	False	NA	NA	NA	121786512	121809397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372
transcript_77805.nic	chr2	+	293	2	ISM	ENSMUSG00000033411.17	ENSMUST00000131258.8	4290	6	-66	21230	9	-21230	5prime_fragment	FALSE	canonical	3	485	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAAATACTCAGAGGTTG	NA	False	NA	NA	False	NA	NA	NA	121786900	121799645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121787099_121799550
transcript_77806.known	chr2	-	7671	40	FSM	ENSMUSG00000033396.14	ENSMUST00000036450.8	7671	40	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_26	28.2050349648808	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTACTGCTGAGGAAATC	6979	False	NA	NA	False	AATAAA	-22	NA	121948867	121884000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121884542_121884860_121885013_121885846_121886003_121886177_121886267_121886546_121886716_121888823_121888932_121889902_121890037_121890180_121890319_121890651_121890851_121891402_121891543_121895389_121896138_121896725_121896941_121899219_121899383_121900349_121900458_121901345_121901547_121902535_121902791_121903326_121903487_121904984_121905094_121905775_121905982_121910713_121910880_121912335_121912403_121913880_121914043_121915375_121915522_121917343_121917451_121918613_121918818_121922637_121922849_121923445_121923622_121923896_121924025_121924938_121925011_121926070_121926248_121927736_121927913_121928581_121928738_121932126_121932260_121934388_121934535_121938517_121938967_121939173_121939312_121942196_121942390_121943495_121943721_121945088_121945271_121948601
transcript_77808.nic	chr2	-	2536	14	ISM	ENSMUSG00000033396.14	ENSMUST00000036450.8	7671	40	-22	39548	-22	472	5prime_fragment	FALSE	canonical	3	63	junction_6	13.8794471523342	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGAGTTTCACAAACAGGA	6957	False	NA	NA	False	GATAAA	-4	NA	121948889	121923548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_121923622_121923896_121924025_121924938_121925011_121926070_121926248_121927736_121927913_121928581_121928738_121932126_121932260_121934388_121934535_121938517_121938967_121939173_121939312_121942196_121942390_121943495_121943721_121945088_121945271_121948601
transcript_7781.known	chr1	+	2792	8	FSM	ENSMUSG00000026623.17	ENSMUST00000110856.8	2792	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	20.3610271983372	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAGAAAAAGGAAAGA	NA	False	NA	NA	False	AATAAA	-30	NA	191450500	191512089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_191450710_191451465_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494
transcript_77810.known	chr2	+	5413	8	FSM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	0	0	0	0	multi-exon	FALSE	canonical	3	888	junction_1	160.980921673524	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGCTGTCTTTCTCTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	121859026	121887079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882447
transcript_77814.nic	chr2	+	834	7	ISM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	-54	4784	-54	-4784	5prime_fragment	FALSE	canonical	3	888	junction_1	173.69801380557	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGGAAAGCACGCTCTG	NA	False	NA	NA	False	AAGAAA	-2	NA	121858972	121882295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222
transcript_77815.nic	chr2	+	621	6	ISM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	22	6014	22	-6014	5prime_fragment	FALSE	canonical	3	888	junction_1	186.885633476734	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGAAAAATCACTATATTA	NA	False	NA	NA	False	GATAAA	-10	NA	121859048	121881065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967
transcript_77816.known	chr2	-	1813	6	FSM	ENSMUSG00000033396.14	ENSMUST00000135847.2	1813	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	7.08237248385031	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGTGTGTCTTAATTT	6990	False	NA	NA	False	NA	NA	NA	121948856	121938146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_121938967_121939173_121939312_121942196_121942390_121943495_121943721_121945088_121945271_121948601
transcript_77819.nic	chr2	+	461	4	ISM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	-54	14948	-54	12322	5prime_fragment	FALSE	canonical	3	888	junction_1	218.702740926786	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGCAAGAAGAAATTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	121858972	121872131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062
transcript_7782.known	chr1	+	3227	8	FSM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_7	41.1061344049071	730	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGATGTTTGTATTCT	NA	False	NA	29	True	TATAAA	-40	NA	191553555	191565162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248
transcript_77820.nic	chr2	+	392	3	ISM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	-54	15388	-54	11882	5prime_fragment	FALSE	canonical	3	888	junction_1	255	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCCACGTTGTTTATTC	NA	False	NA	NA	False	NA	NA	NA	121858972	121871691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_121859206_121859288_121859393_121871636
transcript_77821.known	chr2	+	594	2	FSM	ENSMUSG00000027236.9	ENSMUST00000142747.2	594	2	0	0	0	0	multi-exon	FALSE	canonical	3	888	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAGGTATGATTGTGAA	NA	False	NA	NA	False	NA	NA	NA	121859132	121859809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121859206_121859288
transcript_77825.known	chr2	+	860	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	121978166	121983564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
transcript_77827.known	chr2	+	2115	7	FSM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	42.3910367884533	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1945	False	NA	NA	False	AATAAA	-15	NA	122016752	122036878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_122016834_122016944_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_77834.nic	chr2	+	2000	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1920	False	NA	NA	False	AATAAA	-15	NA	122016727	122036878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_77839.nic	chr2	+	2112	6	ISM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	114	0	-88	0	3prime_fragment	FALSE	canonical	3	14	junction_2	46.343931641586	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	2059	False	NA	NA	False	AATAAA	-15	NA	122016866	122036878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_7784.known	chr1	+	5244	2	FSM	ENSMUSG00000037434.8	ENSMUST00000044954.7	5244	2	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTTGTTTGTGCATGTG	NA	False	NA	27	True	AATAAA	-14	NA	191638878	191645359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_191639726_191640962
transcript_77842.nnic	chr2	+	1938	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1920	False	NA	NA	False	AATAAA	-15	NA	122016727	122036878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
transcript_77843.known	chr2	+	448	5	FSM	ENSMUSG00000027229.6	ENSMUST00000149861.2	448	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	43.0486643230658	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACATCTGGACACTTGC	2147	False	NA	NA	False	TATAAA	-34	NA	122016954	122035442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_77850.nnic	chr2	+	1919	4	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-97	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_1	28.5228952870419	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	2050	False	NA	NA	False	AATAAA	-15	NA	122016857	122036878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_122017027_122023712_122023787_122028866_122028956_122035291
transcript_77858.known	chr2	+	2352	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	10.5763592507063	361	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTATGTGGTTTGTGCCT	NA	False	NA	16	True	AATAAA	-19	NA	122065229	122095821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
transcript_77872.known	chr2	-	1539	6	FSM	ENSMUSG00000033256.15	ENSMUST00000151130.8	1539	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	39.8216021777125	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCCCCGCCCCAGTCAG	NA	False	NA	21	True	NA	NA	NA	122199618	122179608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_122180021_122184245_122184366_122184511_122184679_122187563_122187771_122189928_122190071_122199127
transcript_77873.nnic	chr2	-	1375	6	NNC	ENSMUSG00000033256.15	novel	1557	6	NA	NA	-1039	0	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_5	49.9199358973947	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCCGAGCATCCACTCG	NA	False	NA	-11	True	TATAAA	-38	NA	122200682	122179373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_122180021_122184245_122184366_122184509_122184679_122187563_122187771_122189928_122190071_122200592
transcript_77885.known	chr2	-	2389	9	FSM	ENSMUSG00000027199.15	ENSMUST00000028624.9	2389	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGATTTCTGTCTCA	NA	False	NA	NA	False	AATAAA	-26	NA	122441784	122424947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_122426091_122427852_122427970_122428617_122428682_122430859_122431025_122431172_122431311_122432985_122433177_122434062_122434259_122440149_122440369_122441628
transcript_77889.known	chr2	+	2347	8	FSM	ENSMUSG00000118663.1	ENSMUST00000239506.1	2347	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.6954231805876	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGGAGAAGGGAGAGGTC	NA	False	NA	NA	False	NA	NA	NA	122461119	122474750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_122462241_122462999_122463186_122466452_122466612_122469669_122469880_122471036_122471230_122472613_122472745_122473758_122473885_122474529
transcript_77896.known	chr2	+	792	5	FSM	ENSMUSG00000033213.17	ENSMUST00000047498.15	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_4	21.9146070008111	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAAATGCAGATTTCTAA	NA	False	NA	NA	False	TATAAA	-16	NA	122479769	122483111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_122479862_122479991_122480054_122480176_122480263_122481135_122481197_122482620
transcript_77897.known	chr2	+	751	4	FSM	ENSMUSG00000033213.17	ENSMUST00000110512.4	751	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	25.0377492776186	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479834	122483005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_122480054_122480176_122480263_122481135_122481197_122482620
transcript_77909.known	chr2	+	2088	5	FSM	ENSMUSG00000005804.15	ENSMUST00000148460.8	2088	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	54.4443523241851	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGGCTGGCGATTCTTTT	8285	False	NA	4	True	AATAAA	-16	NA	122580438	122590019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_122580625_122584508_122584651_122586049_122586134_122587974_122588062_122588430
transcript_77912.nic	chr2	-	3068	17	ISM	ENSMUSG00000027201.17	ENSMUST00000152367.8	2071	19	-51	1173	-16	0	5prime_fragment	FALSE	canonical	0	0	junction_14	229.918523272376	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCTTACTTGTTGCTTT	NA	False	NA	-8	True	NA	NA	NA	124965597	124929660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124940716_124940768_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
transcript_77914.known	chr2	-	2999	16	FSM	ENSMUSG00000027201.17	ENSMUST00000067780.10	2999	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	210.706705055999	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCTTACTTGTTGCTT	NA	False	NA	-9	True	NA	NA	NA	124965580	124929661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
transcript_77918.known	chr2	-	2942	16	FSM	ENSMUSG00000027201.17	ENSMUST00000142718.8	2942	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	238.581306895574	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCTTACTTGTTGCTTT	NA	False	NA	-8	True	NA	NA	NA	124965543	124929660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124940716_124940768_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
transcript_7792.nic	chr1	-	2354	13	NIC	ENSMUSG00000037395.17	novel	1844	12	NA	NA	-41	152	combination_of_known_junctions	FALSE	canonical	2	5	junction_10	13.1811629060396	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTAAGTTCCTTAAGGA	NA	False	NA	NA	False	NA	NA	NA	191822400	191784731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814123_191814238_191814682_191814761_191821732_191821790_191822035
transcript_77923.known	chr2	-	2928	15	FSM	ENSMUSG00000027201.17	ENSMUST00000147105.8	2928	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	219.217253156846	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCTTACTTGTTGCTT	NA	False	NA	-9	True	NA	NA	NA	124965581	124929661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
transcript_77930.known	chr2	-	1801	10	FSM	ENSMUSG00000027201.17	ENSMUST00000149911.2	1801	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	239.764236050519	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGAATGAGAAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	124965495	124941554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
transcript_77932.known	chr2	+	1954	9	FSM	ENSMUSG00000035183.15	ENSMUST00000070353.4	1954	9	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_6	24.0624188310319	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124910043	124930597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124927576_124927784_124929339_124929442_124929883
transcript_77941.nic	chr2	-	324	2	ISM	ENSMUSG00000027201.17	ENSMUST00000149911.2	1801	10	-102	17208	-16	-17208	5prime_fragment	FALSE	canonical	3	644	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGATTTAAAAGAAAAGTC	NA	False	NA	NA	False	AAGAAA	-3	NA	124965597	124958762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_124958794_124965304
transcript_77942.known	chr2	+	1020	7	FSM	ENSMUSG00000027203.16	ENSMUST00000082122.14	1020	7	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_1	864.28364685572	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTGGAGAACATGGAGG	NA	False	NA	32	True	AATAAA	-33	NA	125089109	125099668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_125089322_125089683_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
transcript_77947.known	chr2	+	1950	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	0	0	0	0	multi-exon	FALSE	canonical	3	2160	junction_3	102.069780052668	2013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGTATATGTTTTAAGG	NA	False	NA	117	True	ATTAAA	-18	NA	125089401	125100528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
transcript_77952.known	chr2	-	5768	28	FSM	ENSMUSG00000068394.5	ENSMUST00000089776.3	5768	28	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_22	10.571073713266	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCATGACTTATTTT	NA	False	NA	0	True	AATAAA	-18	NA	125467033	125405007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_125406318_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125413588_125413754_125418633_125418776_125421293_125421945_125423615_125423748_125425711_125425985_125428250_125428395_125429520_125429648_125429812_125429942_125431375_125431486_125432029_125432153_125436792_125436992_125443068_125443233_125444761_125444854_125447255_125447404_125452927_125453129_125454856_125454997_125456207_125456352_125460292_125460462_125461585_125461811_125461916_125461990_125462206_125462311_125463092_125463187_125466795
transcript_77963.known	chr2	+	1691	1	FSM	ENSMUSG00000091337.4	ENSMUST00000164756.4	1691	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTTTGTCTAATAGCT	NA	False	NA	18	True	AATAAA	-18	NA	125515014	125516705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_125515000_125516700
transcript_77965.known	chr2	-	6797	18	FSM	ENSMUSG00000035093.17	ENSMUST00000053699.13	6797	18	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	11.6758408483317	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGTTCTTTTTCTAT	304	False	NA	NA	False	AATAAA	-36	NA	125624790	125578905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_125582838_125585733_125585954_125587716_125587872_125589304_125589526_125592198_125592362_125593648_125593782_125594733_125594901_125599113_125599256_125599351_125599520_125600085_125600167_125602191_125602327_125609294_125609411_125609728_125609754_125610026_125610254_125613328_125613465_125615095_125615421_125617472_125617652_125624518
transcript_7797.known	chr1	-	1844	12	FSM	ENSMUSG00000037395.17	ENSMUST00000192866.6	1844	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	6.62077871128477	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTACCAGTGCTCATC	NA	False	NA	NA	False	NA	NA	NA	191822359	191785086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_77982.known	chr2	+	2605	10	FSM	ENSMUSG00000027207.16	ENSMUST00000028636.13	2605	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	32.0916896284673	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTCATCTGCCTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	125701053	125826219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_125701298_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
transcript_77984.known	chr2	+	1928	10	FSM	ENSMUSG00000027207.16	ENSMUST00000094604.9	1928	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	15.4040238449986	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTGCTCTTGAATG	NA	False	NA	8	True	ATTAAA	-15	NA	125708026	125825507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
transcript_77988.known	chr2	-	2073	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTTGGTTCTTGATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	125701059	125673521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
transcript_77989.known	chr2	-	3392	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGGTGTGTGCATGTGA	NA	False	NA	-4	True	AATAAA	-22	NA	125701059	125672223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
transcript_7799.known	chr1	-	2214	11	FSM	ENSMUSG00000026637.15	ENSMUST00000195815.3	2214	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	1.02469507659596	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGCCTGGGGCTCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	191776868	191729167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191729969_191731758_191731928_191733717_191733859_191738764_191738858_191741554_191741630_191742389_191742468_191743409_191743575_191746941_191747044_191751193_191751252_191754716_191754936_191776555
transcript_78011.known	chr2	+	1342	5	FSM	ENSMUSG00000023330.13	ENSMUST00000170908.8	1342	5	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	15.4495145554804	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7279	False	NA	25	True	ATTAAA	-23	NA	125994060	126007196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_125994135_125996465_125996781_126000329_126000474_126001689_126001949_126006646
transcript_78013.nnic	chr2	+	1664	5	NNC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	62.1867148191637	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7320	False	NA	25	True	ATTAAA	-23	NA	125994101	126007196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_125994498_125996465_125996781_126000329_126000474_126001689_126001949_126006646
transcript_78016.known	chr2	+	1276	4	FSM	ENSMUSG00000023330.13	ENSMUST00000110437.4	1276	4	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_3	13.6381816969859	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCCCTTACCTTTCGACT	9679	False	NA	28	True	ATTAAA	-26	NA	125996460	126007199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_125996781_126000329_126000474_126001689_126001949_126006646
transcript_78017.known	chr2	+	2918	10	FSM	ENSMUSG00000027359.17	ENSMUST00000061491.14	2918	10	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	10.1592261783666	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACGAGGCTTCGCTGTCT	NA	False	NA	16	True	AATAAA	-16	NA	126394326	126430163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_126395553_126403456_126403667_126406597_126406757_126409666_126409792_126416621_126416817_126419779_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
transcript_7802.nic	chr1	-	2182	11	NIC	ENSMUSG00000037395.17	novel	1844	12	NA	NA	-41	152	combination_of_known_junctions	FALSE	canonical	2	7	junction_2	11.1449540151586	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTAAGTTCCTTAAGGA	NA	False	NA	NA	False	NA	NA	NA	191822400	191784731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_191785456_191785925_191786168_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_78023.known	chr2	-	2751	10	FSM	ENSMUSG00000027361.16	ENSMUST00000103227.8	2751	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	168.845754725693	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCTCCATGCAGACTCAT	NA	False	NA	-12	True	ATTAAA	-12	NA	126517464	126470834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126504910_126505009_126517275
transcript_78028.known	chr2	-	2613	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110424.9	2613	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	121.804595048791	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCATGCAGACTCATGT	NA	False	NA	-10	True	ATTAAA	-14	NA	126517422	126470832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
transcript_7803.known	chr1	-	3791	11	FSM	ENSMUSG00000037395.17	ENSMUST00000110849.10	3791	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	12.5143917151414	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAACGAAAAAGTATTTAAT	NA	False	NA	NA	False	AATAAA	-27	NA	191822307	191782845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191785456_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_78030.nic	chr2	-	1543	9	NIC	ENSMUSG00000027361.16	novel	1338	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_8	161.744976738074	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	False	NA	-17	True	NA	NA	NA	126517513	126480940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126504910_126505009_126517275
transcript_78035.known	chr2	-	1338	8	FSM	ENSMUSG00000027361.16	ENSMUST00000103226.10	1338	8	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_7	27.2074419591255	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	False	NA	-17	True	NA	NA	NA	126517406	126480940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
transcript_7804.known	chr1	-	3748	10	FSM	ENSMUSG00000037395.17	ENSMUST00000073279.13	3748	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	12.9109007441267	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTACTGTTAAAATTAAC	NA	False	NA	NA	False	AATAAA	-12	NA	191822337	191782860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191785456_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_78047.known	chr2	+	4154	19	FSM	ENSMUSG00000027363.16	ENSMUST00000110416.3	4154	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	95.792745028003	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCATTTGAAACCT	3593	False	NA	-1	True	ATTAAA	-13	NA	126549279	126601210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_126549408_126559914_126560085_126561911_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
transcript_7805.known	chr1	-	1623	10	FSM	ENSMUSG00000037395.17	ENSMUST00000192491.6	1623	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	11.5373788665845	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGGTTTTTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	191822323	191785683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_191786168_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_78050.known	chr2	+	4145	19	FSM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_9	42.2163738639668	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGAAACCTTGTACAT	3576	False	NA	6	True	ATTAAA	-20	NA	126549262	126601217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
transcript_78056.nnic	chr2	+	4161	19	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	90.2496537389479	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGAAACCTTGTACAT	3583	False	NA	6	True	ATTAAA	-20	NA	126549269	126601217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_126549408_126559914_126560108_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
transcript_7806.nnic	chr1	-	2803	13	NNC	ENSMUSG00000037375.17	novel	2839	12	NA	NA	-26	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	6.87992248018343	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGTCTTGATACTTC	NA	False	NA	NA	False	AATAAA	-17	NA	192453557	192195132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_192195961_192196025_192196284_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
transcript_78065.nic	chr2	+	3034	17	ISM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	-10	3293	5	-3244	5prime_fragment	FALSE	canonical	3	323	junction_9	44.6933562596277	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTTACAGATAACAACAGAT	3566	False	NA	NA	False	AAGAAA	-2	NA	126549252	126597924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892
transcript_78074.nic	chr2	+	1658	11	ISM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	-5	16950	-5	-16901	5prime_fragment	FALSE	canonical	3	323	junction_9	32.698012171996	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGAACAGAAAGAGAAGC	3571	False	NA	NA	False	AATAAA	-30	NA	126549257	126584267	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043
transcript_78075.nic	chr2	+	1877	11	ISM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	-119	16845	-104	-16796	5prime_fragment	TRUE	canonical	3	323	junction_9	32.698012171996	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGATGGACAAGAGAAAAAAG	3457	False	NA	NA	False	NA	NA	NA	126549143	126584372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043
transcript_7808.known	chr1	-	1819	12	FSM	ENSMUSG00000037375.17	ENSMUST00000128619.8	1819	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	7.07457325757953	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	192453521	192179018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_192179157_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
transcript_78088.known	chr2	-	6985	39	FSM	ENSMUSG00000027365.15	ENSMUST00000028843.12	6985	39	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_11	63.1605262609672	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAGATGTTTAATGAGT	NA	False	NA	-22	True	ATTAAA	-29	NA	126718037	126633490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647005_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_78089.known	chr2	-	7107	39	FSM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_33	52.8048791605273	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTAATGAGTTTACTC	NA	False	NA	-16	True	ATTAAA	-35	NA	126718150	126633484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_7809.known	chr1	-	2839	12	FSM	ENSMUSG00000037375.17	ENSMUST00000044190.12	2839	12	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	5.12327374676559	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACATGTGTCTTGATAC	NA	False	NA	NA	False	AATAAA	-14	NA	192453531	192195135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_192196284_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
transcript_78096.nic	chr2	-	2098	16	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	-51	37703	-51	0	5prime_fragment	FALSE	canonical	3	201	junction_10	20.8373596109381	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAGAAAAGAACCAAAG	NA	False	NA	NA	False	NA	NA	NA	126718201	126671187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_78097.nic	chr2	-	2075	15	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	-51	38564	-51	712	5prime_fragment	FALSE	canonical	3	201	junction_9	21.566697683688	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGTTTTTATTTTGTTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	126718201	126672048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_781.known	chr1	-	3958	15	FSM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	31.7753594690564	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGAGGAAATTTTTTCTA	NA	False	NA	-2	True	AATAAA	-17	NA	33853608	33800625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_33801291_33804924_33804991_33808801_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
transcript_78113.known	chr2	-	5616	15	FSM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	6.77630927178938	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTATTCTTTTGTA	8279	False	NA	NA	False	AATAAA	-21	NA	126775155	126732310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
transcript_78121.known	chr2	+	4600	21	FSM	ENSMUSG00000001998.16	ENSMUST00000002063.15	4600	21	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_11	7.58468852359805	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTACAGAGCTGTCATC	NA	False	NA	NA	False	NA	NA	NA	126850649	126909829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_126850821_126853710_126853783_126856089_126856214_126861205_126861280_126870091_126870214_126875449_126875610_126876963_126877131_126879705_126879780_126885340_126885464_126885566_126885677_126888067_126888208_126888765_126888879_126888962_126889082_126891179_126891483_126894099_126894215_126898100_126898225_126902181_126902441_126903445_126903959_126905189_126905381_126906791_126906950_126908461
transcript_78128.known	chr2	+	1160	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.5988626152721	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2211	False	NA	NA	False	AATAAA	-20	NA	126912586	126939004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
transcript_78130.nic	chr2	+	1079	6	NIC	ENSMUSG00000001999.16	novel	772	7	NA	NA	-18	423	combination_of_known_junctions	FALSE	canonical	3	37	junction_5	66.545022353291	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGTGAGTCGATTTTGA	2191	False	NA	NA	False	NA	NA	NA	126912566	126932692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126932163
transcript_78132.known	chr2	+	1460	5	FSM	ENSMUSG00000001999.16	ENSMUST00000142861.2	1460	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.701947694344	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAAAAAGAGG	2209	False	NA	NA	False	AAAAAG	-43	NA	126912584	126929790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764
transcript_78137.known	chr2	-	2695	18	FSM	ENSMUSG00000034906.16	ENSMUST00000110387.4	2695	18	0	0	0	0	multi-exon	TRUE	canonical	3	394	junction_9	30.9044738701424	471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTCAGTATTAGCGTCACA	NA	False	NA	13	True	AATAAA	-34	NA	126975874	126945728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
transcript_7814.known	chr1	-	3350	4	FSM	ENSMUSG00000016262.15	ENSMUST00000155579.8	3350	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTTTTTTAAAATTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	192538064	192526795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_192529524_192532058_192532175_192533259_192533452_192537750
transcript_78149.known	chr2	-	1898	2	FSM	ENSMUSG00000074825.5	ENSMUST00000110386.2	1898	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGACTTAATTTCAGTCA	NA	False	NA	NA	False	NA	NA	NA	126985226	126982328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_126984135_126985134
transcript_7815.known	chr1	-	7882	8	FSM	ENSMUSG00000016200.15	ENSMUST00000195354.6	7882	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	6	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACGTTTCTTCACATTT	128	False	NA	NA	False	AATAAA	-18	NA	192718083	192573540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_192579929_192584059_192584250_192612785_192613236_192615421_192615694_192662653_192662870_192669025_192669191_192709277_192709326_192717930
transcript_78150.known	chr2	-	3424	3	FSM	ENSMUSG00000074825.5	ENSMUST00000132773.2	3424	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAACTGGAATCTGTTC	NA	False	NA	-11	True	AATAAA	-22	NA	126985362	126980691	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_126983647_126983893_126984135_126985134
transcript_78151.known	chr2	-	2364	2	FSM	ENSMUSG00000044145.3	ENSMUST00000150956.2	2364	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAACACAATGCTCAGCTT	NA	False	NA	NA	False	NA	NA	NA	127050174	127044486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127046771_127050094
transcript_78153.known	chr2	+	6745	45	FSM	ENSMUSG00000003660.11	ENSMUST00000103220.4	6745	45	0	0	0	0	multi-exon	FALSE	canonical	3	516	junction_16	102.022451345341	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCCTTAACAGTGATAC	NA	False	NA	15	True	AATAAA	-17	NA	127050318	127082371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127050459_127050893_127051058_127052613_127052786_127053519_127053713_127054268_127054325_127056726_127056826_127057968_127058122_127058273_127058374_127058532_127058670_127059148_127059233_127059311_127059486_127059792_127059931_127060272_127060429_127060948_127061120_127063664_127063859_127064050_127064175_127066500_127066651_127067002_127067114_127067925_127068058_127068214_127068404_127068864_127069063_127069796_127069950_127070064_127070146_127070461_127070546_127070978_127071086_127071405_127071525_127071805_127071961_127072053_127072244_127072433_127072608_127073606_127073768_127074325_127074554_127074820_127075013_127075099_127075279_127075419_127075572_127076883_127076993_127077879_127077989_127078378_127078569_127078659_127078825_127079380_127079503_127079742_127079887_127079978_127080156_127080419_127080581_127080658_127080741_127081798_127081892_127081988
transcript_78161.nic	chr2	+	2206	16	ISM	ENSMUSG00000003660.11	ENSMUST00000103220.4	6745	45	-23	18269	-10	-535	5prime_fragment	FALSE	canonical	3	532	junction_10	57.6123443562421	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATCAAACGTTTCCAGAT	NA	False	NA	NA	False	NA	NA	NA	127050295	127064102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_127050459_127050893_127051058_127052613_127052786_127053519_127053713_127054268_127054325_127056726_127056826_127057968_127058122_127058273_127058374_127058532_127058670_127059148_127059233_127059311_127059486_127059792_127059931_127060272_127060429_127060948_127061120_127063664_127063859_127064050
transcript_78165.nic	chr2	+	535	4	ISM	ENSMUSG00000003660.11	ENSMUST00000142327.2	2923	15	7	11065	-6	-11065	5prime_fragment	FALSE	canonical	3	611	junction_1	9.20144916122817	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAGCTTCGAGACAAGG	NA	False	NA	NA	False	NA	NA	NA	127050312	127053572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_127050459_127050893_127051058_127052613_127052786_127053519
transcript_78167.known	chr2	-	3075	7	FSM	ENSMUSG00000003662.11	ENSMUST00000003759.11	3075	7	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_2	19.7793382655291	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCTTTTAGTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	127089736	127082857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127084958_127086832_127086921_127087642_127087845_127088332_127088422_127088521_127088634_127088929_127089079_127089401
transcript_78175.known	chr2	+	4811	4	FSM	ENSMUSG00000034850.16	ENSMUST00000035871.15	4811	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	34.6634613902818	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTTTCCGGTCTACTCT	2334	False	NA	10	True	AATAAA	-15	NA	127089827	127103027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127090005_127090411_127090730_127097924_127098090_127098876
transcript_78178.known	chr2	+	842	3	FSM	ENSMUSG00000034850.16	ENSMUST00000174288.2	842	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	67.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGGATGGTCAGATAAGT	2399	False	NA	NA	False	NA	NA	NA	127089892	127099441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127090005_127097924_127098090_127098876
transcript_78184.known	chr2	+	3116	8	FSM	ENSMUSG00000027367.17	ENSMUST00000110375.9	3116	8	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_5	27.592515992122	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGAGTGTTCATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	127112148	127140852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127112801_127126014_127126224_127126451_127126502_127132691_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
transcript_78187.known	chr2	+	2869	7	FSM	ENSMUSG00000027367.17	ENSMUST00000125049.2	2869	7	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_4	25.3026129524645	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGAGTGTTCATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	127112623	127140852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127112801_127126014_127126502_127132691_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
transcript_78189.known	chr2	+	1617	4	FSM	ENSMUSG00000027368.7	ENSMUST00000028846.7	1617	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACATTGTCTGGTCTCAA	NA	False	NA	NA	False	AATAAA	-29	NA	127178078	127180296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127178558_127178696_127178819_127179168_127179389_127179500
transcript_78190.known	chr2	+	4014	1	FSM	ENSMUSG00000058620.6	ENSMUST00000104934.2	4014	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAGTCCCGTGTCTAAAG	NA	False	NA	NA	False	AATAAA	-21	NA	127205127	127209141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127205100_127209100
transcript_78196.known	chr2	+	2628	22	FSM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	53.4925768898164	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5001	False	NA	14	True	AATAAA	-25	NA	127267118	127278012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
transcript_78200.nnic	chr2	+	2620	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-54	0	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_1	54.5121842462079	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	4947	False	NA	14	True	AATAAA	-25	NA	127267064	127278012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_127267142_127269222_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
transcript_78202.nnic	chr2	+	2879	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	84	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	56.2349702772765	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5085	False	NA	14	True	AATAAA	-25	NA	127267202	127278012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_127267477_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
transcript_78228.known	chr2	-	1211	8	FSM	ENSMUSG00000027371.11	ENSMUST00000028848.4	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	10.321366781822	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGCTTCCACTGTCTTT	NA	False	NA	-4	True	AATAAA	-19	NA	127286470	127278134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280193_127280429_127280490_127282305_127282523_127283793_127284045_127286336
transcript_7823.known	chr1	-	5570	12	FSM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	6.18449140061635	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACCTGGGGTGTGTGTG	NA	False	NA	NA	False	AAAACA	-7	NA	192812580	192786709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
transcript_78233.nic	chr2	-	2749	6	NIC	ENSMUSG00000027371.11	novel	1211	8	NA	NA	-19	0	intron_retention	FALSE	canonical	3	84	junction_4	10.5754432531218	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGCTTCCACTGTCTTT	NA	False	NA	-4	True	AATAAA	-19	NA	127286504	127278134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_127278327_127278465_127278554_127278656_127280490_127282305_127282523_127283793_127284045_127286336
transcript_78236.known	chr2	-	2728	9	FSM	ENSMUSG00000079056.13	ENSMUST00000028850.15	2728	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	31.0161248385416	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGACTCTCTCCAGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	127363290	127298417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307895_127352748_127352915_127363157
transcript_78237.known	chr2	-	2732	9	FSM	ENSMUSG00000079056.13	ENSMUST00000103215.11	2732	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	30.8015320235861	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGACTCTCTCCAGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	127363290	127298417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127352748_127352915_127363157
transcript_78238.known	chr2	-	1296	8	FSM	ENSMUSG00000079056.13	ENSMUST00000088538.6	1296	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	5.52175659716791	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTCCTCTGGCTTG	9628	False	NA	99	True	NA	NA	NA	127324419	127300049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127323924
transcript_7824.known	chr1	-	5504	12	FSM	ENSMUSG00000016181.11	ENSMUST00000195291.6	5504	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	17.8908536584507	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGCAAAACAAAACTGAAAC	NA	False	NA	NA	False	NA	NA	NA	192812552	192786725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_192790095_192796064_192796289_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
transcript_78243.known	chr2	-	2981	6	FSM	ENSMUSG00000034800.16	ENSMUST00000110368.9	2981	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	12.1983605455815	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAGTGTCTCTATTCA	NA	False	NA	-19	True	NA	NA	NA	127426589	127417452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127423778_127423996_127426549
transcript_78246.known	chr2	-	2765	5	FSM	ENSMUSG00000034800.16	ENSMUST00000077422.12	2765	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	7.11951543294907	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAATACTGAAGTGTCT	NA	False	NA	-26	True	NA	NA	NA	127426597	127417459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127426549
transcript_78247.known	chr2	-	4912	6	FSM	ENSMUSG00000034800.16	ENSMUST00000110366.8	4912	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	15.1472769830092	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGTAAAAAAATAAAGGAGAC	NA	False	NA	-45	True	NA	NA	NA	127429014	127416581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127426585_127426753_127427864
transcript_78250.known	chr2	+	4481	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTCCAATAACTTGGC	3967	False	NA	7	True	AATAAA	-18	NA	127429141	127448749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
transcript_78262.nic	chr2	+	954	7	ISM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	-40	8614	-40	-161	5prime_fragment	FALSE	canonical	3	1110	junction_4	81.5270916117254	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGGAAGAAAGAAGTCGGT	3927	False	NA	NA	False	AAGAAA	-23	NA	127429101	127440135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105
transcript_78264.known	chr2	+	812	5	FSM	ENSMUSG00000027374.13	ENSMUST00000134101.8	812	5	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	81.6160982894919	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACTGCATCATAGAAAAC	4164	False	NA	NA	False	AATAAA	-15	NA	127429338	127437977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583
transcript_78266.nic	chr2	+	614	4	ISM	ENSMUSG00000027374.13	ENSMUST00000134101.8	812	5	-237	1529	-40	-1167	5prime_fragment	FALSE	canonical	3	1283	junction_2	14.1970262926979	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGGAAGGATTTGAACA	3927	False	NA	NA	False	NA	NA	NA	127429101	127436448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363
transcript_78269.known	chr2	-	2778	4	FSM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.83176086632785	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTCTCACTCTTTTGT	NA	False	NA	-2	True	ATTAAA	-17	NA	127498615	127475145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127476975_127480508_127480635_127482140_127482309_127497960
transcript_78272.known	chr2	-	486	3	FSM	ENSMUSG00000027375.15	ENSMUST00000028853.7	486	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	55.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAACAAAACAAAC	NA	False	NA	-52	True	NA	NA	NA	127498139	127476793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127476975_127480508_127480635_127497960
transcript_78274.known	chr2	-	2006	4	FSM	ENSMUSG00000027377.3	ENSMUST00000028856.3	2006	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	4.54606056566195	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAGTCTATCGCTTTG	NA	False	NA	2	True	AATAAA	-21	NA	127571852	127546305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675
transcript_78275.known	chr2	-	2296	20	FSM	ENSMUSG00000027378.17	ENSMUST00000110357.2	2296	20	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_11	13.7437973922422	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTGTTATATCTAAATT	2791	False	NA	0	True	AATAAA	-16	NA	127630817	127582655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
transcript_78278.known	chr2	-	800	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_1	0	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACCAAAGCCTTGGTT	NA	False	NA	-5	True	GATAAA	-14	NA	127634408	127633307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127633753_127634053
transcript_78285.nnic	chr2	-	3400	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-21	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	178.998836122846	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACCTAGTTGTTCTAA	NA	False	NA	-5	True	AATAAA	-18	NA	127673806	127643041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659357_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
transcript_78286.known	chr2	-	3421	25	FSM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	0	-3	0	3	multi-exon	TRUE	canonical	0	0	junction_18	145.15221297161	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACCTAGTTGTTCTAA	NA	False	NA	-5	True	AATAAA	-18	NA	127673785	127643041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
transcript_78300.nic	chr2	-	1698	14	ISM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	-21	12727	-21	-3315	5prime_fragment	FALSE	canonical	0	0	junction_7	186.251881369315	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATGGAAACAAAGAAAATTA	NA	False	NA	NA	False	NA	NA	NA	127673806	127655771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
transcript_7831.known	chr1	+	4113	8	FSM	ENSMUSG00000026638.16	ENSMUST00000076521.7	4113	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	3.81190401832181	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATATAAAGCTAGAG	NA	False	NA	NA	False	AATAAA	-10	NA	192835418	192854331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_192835608_192839523_192839701_192843920_192844126_192844909_192845039_192848073_192848233_192849746_192850140_192850824_192850944_192851589
transcript_78310.nic	chr2	+	2867	19	NIC	ENSMUSG00000027380.11	novel	531	6	NA	NA	-180	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	2.77999911182151	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGATTACACAGGCGGAAA	NA	False	NA	NA	False	AATAAA	-18	NA	127680615	127965793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_127680903_127691112_127691210_127709202_127709287_127713181_127713269_127714029_127714129_127719663_127719779_127720676_127720764_127722345_127722419_127726325_127726459_127753349_127753385_127814451_127814569_127820592_127820747_127851996_127852087_127876732_127876843_127886263_127886376_127917766_127917855_127928278_127928350_127947596_127947699_127964867
transcript_78314.known	chr2	+	3538	5	FSM	ENSMUSG00000027381.17	ENSMUST00000103210.2	3538	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	9.78199877325692	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAATCACTG	NA	False	NA	NA	False	CATAAA	-5	NA	127967969	128003148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127968173_127970539_127970677_127970844_127970935_127989004_127989115_128000150
transcript_78323.known	chr2	+	5036	4	FSM	ENSMUSG00000027381.17	ENSMUST00000110341.9	5036	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	11.2644968324772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTGTTCGATGTGTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	127967958	128004467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127968173_127970539_127970935_127989004_127989115_128000150
transcript_78324.known	chr2	+	974	4	FSM	ENSMUSG00000027381.17	ENSMUST00000129206.2	974	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	12.684198393627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGGACTGTTAAGCCC	NA	False	NA	NA	False	ATTAAA	-20	NA	127969494	127972065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_127969733_127970539_127970677_127970844_127970935_127971556
transcript_78331.known	chr2	-	682	3	FSM	ENSMUSG00000074813.15	ENSMUST00000239374.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATTGTCTGTTTCTTAG	NA	False	NA	NA	False	ATTAAA	-18	NA	128271509	128214025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_128214348_128271013_128271092_128271227
transcript_78332.known	chr2	-	1105	2	FSM	ENSMUSG00000074813.15	ENSMUST00000239199.2	1105	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTGTTTCTTAGCTAAT	NA	False	NA	NA	False	ATTAAA	-23	NA	128271791	128214020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_128214348_128271013
transcript_78335.known	chr2	-	8942	48	FSM	ENSMUSG00000014355.11	ENSMUST00000014499.10	8942	48	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_42	39.2671319365267	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGACTTTAGCAATGTCA	NA	False	NA	-22	True	NA	NA	NA	128529311	128452023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_128454984_128457289_128457425_128459473_128459673_128461173_128461270_128461813_128461901_128464292_128464432_128465415_128465484_128465797_128465876_128466777_128466896_128469040_128469128_128470416_128470611_128471436_128471491_128471599_128471691_128472147_128472225_128474517_128474593_128475256_128475336_128476352_128476436_128476557_128476693_128479027_128479120_128483261_128483497_128484365_128484638_128487053_128487173_128490224_128490440_128492115_128492295_128494615_128494687_128494771_128494809_128495086_128495166_128499045_128499195_128500167_128500260_128501656_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
transcript_78342.known	chr2	-	4214	28	FSM	ENSMUSG00000014355.11	ENSMUST00000110333.2	4214	28	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_22	33.6187778216613	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGTCTTCATATTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	128529296	128483996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_128484638_128487053_128487173_128490224_128490440_128492115_128492295_128494615_128494687_128494771_128494809_128495086_128495166_128499045_128499195_128500167_128500260_128501656_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
transcript_78347.known	chr2	+	4302	19	FSM	ENSMUSG00000014361.6	ENSMUST00000014505.5	4302	19	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_3	3.05302925867424	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGCAGAACTCAAAATGT	NA	False	NA	NA	False	AATAAA	-20	NA	128540875	128644814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_128541024_128571105_128571515_128578482_128578584_128580115_128580290_128592019_128592107_128593826_128593943_128600962_128601147_128603996_128604149_128613266_128613421_128618205_128618360_128619332_128619419_128620834_128620931_128621711_128621793_128624442_128624536_128625811_128625931_128632136_128632247_128634865_128635026_128636361_128636499_128643073
transcript_7835.known	chr1	+	379	2	FSM	ENSMUSG00000079144.8	ENSMUST00000192189.2	379	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTTCACCTGGCAGGA	961	False	NA	NA	False	NA	NA	NA	192855887	192856734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_192856085_192856552
transcript_78350.known	chr2	+	4807	19	FSM	ENSMUSG00000014353.16	ENSMUST00000110325.8	4807	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	41.8620603741076	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTTTCCTGGGATTATC	NA	False	NA	9	True	AATAAA	-20	NA	128660037	128696181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128681067_128681140_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
transcript_78351.nnic	chr2	+	2091	20	NNC	ENSMUSG00000014353.16	novel	2100	19	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.1280100759871	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGGAAAAGGAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	128660229	128693712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_128660310_128660364_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128682651_128682724_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
transcript_78355.known	chr2	+	2100	19	FSM	ENSMUSG00000014353.16	ENSMUST00000143398.3	2100	19	0	0	0	0	multi-exon	FALSE	canonical	1	36	junction_11	26.3253621315648	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAACCAGAGAGAGCTACA	NA	False	NA	NA	False	NA	NA	NA	128660222	128693659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128682651_128682724_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
transcript_78370.known	chr2	-	1624	9	FSM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	0	0	0	0	multi-exon	FALSE	canonical	2	159	junction_3	33.6115214621415	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128785997	128768187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
transcript_78374.nic	chr2	-	572	3	ISM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	-13	9044	-13	-9044	5prime_fragment	FALSE	canonical	3	222	junction_2	10.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCGCTAAACTGTTTAC	NA	False	NA	NA	False	AAGAAA	-26	NA	128786010	128777231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_128777467_128781762_128781857_128785767
transcript_78375.known	chr2	+	4916	12	FSM	ENSMUSG00000042851.18	ENSMUST00000110320.9	4916	12	0	0	0	0	multi-exon	FALSE	non_canonical	1	6	junction_7	5.58036700117193	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGACTGGTTCTATAACAG	6932	False	NA	4	True	AATAAA	-18	NA	128809321	128860483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_128809757_128833010_128833192_128835078_128835202_128839524_128839793_128844061_128844199_128847915_128848033_128848632_128848745_128852335_128852446_128853586_128853841_128856255_128856759_128857319_128857554_128858041
transcript_78377.nic	chr2	+	623	2	ISM	ENSMUSG00000042851.18	ENSMUST00000110319.3	1484	4	-44	2889	-37	-2889	5prime_fragment	FALSE	canonical	3	12	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAAAAGGAGGAAACACGA	6895	False	NA	NA	False	NA	NA	NA	128809284	128833161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_128809757_128833010
transcript_78381.known	chr2	+	4567	7	FSM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_4	11.1118055338555	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTGGTCCTCTTAC	NA	False	NA	29	True	ATTAAA	-23	NA	128907861	128938203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913_128931058_128934860
transcript_78384.nic	chr2	+	1900	6	ISM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	-32	6502	-32	0	5prime_fragment	FALSE	canonical	3	70	junction_4	9.64157663455516	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCACTGTTCAGTCCTCC	NA	False	NA	NA	False	ATTAAA	-14	NA	128907829	128931701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913
transcript_7839.known	chr1	-	1623	6	FSM	ENSMUSG00000016194.15	ENSMUST00000016338.15	1623	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.01980390271856	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCTCGCATTCATTT	NA	False	NA	NA	False	NA	NA	NA	192924937	192903941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_192904537_192905929_192906074_192922538_192922725_192922834_192922947_192923639_192923771_192924482
transcript_78390.nnic	chr2	+	3883	15	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_9	95.2666772587266	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGATTTTTATTTT	NA	False	NA	15	True	AATAAA	-16	NA	128942867	128968514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955648_128957558_128957693_128959954_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
transcript_78391.known	chr2	+	3998	15	FSM	ENSMUSG00000027395.16	ENSMUST00000103205.11	3998	15	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_10	36.5564282853179	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGATTTTTATTTT	NA	False	NA	15	True	AATAAA	-16	NA	128942914	128968514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
transcript_7840.nnic	chr1	-	1059	3	NNC	ENSMUSG00000009633.4	novel	871	2	NA	NA	-671	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	38.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192956196	192954468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_192955111_192955296_192955492_192955974
transcript_78404.known	chr2	+	1325	4	FSM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	75.455652906562	323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTAGGTTTGTGTGTT	3825	False	NA	45	True	NA	NA	NA	128971619	128976054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194
transcript_78408.nnic	chr2	+	3431	12	NNC	ENSMUSG00000027397.15	novel	3316	11	NA	NA	-56	0	intron_retention	FALSE	canonical	2	9	junction_6	191.197833591932	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGCTTTTTGTTT	NA	False	NA	22	True	AATAAA	-24	NA	129040627	129053536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129046165_129046225_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
transcript_7841.known	chr1	-	871	2	FSM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192955525	192954468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_192955111_192955296
transcript_78411.known	chr2	+	3316	11	FSM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	146.125973050652	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGCTTTTTGTTT	NA	False	NA	22	True	AATAAA	-24	NA	129040683	129053536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
transcript_78417.known	chr2	+	1628	4	FSM	ENSMUSG00000027397.15	ENSMUST00000140907.8	1628	4	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	11.8977121983832	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTCGACA	NA	False	NA	NA	False	NA	NA	NA	129040720	129043098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419
transcript_78418.known	chr2	-	1943	1	FSM	ENSMUSG00000103009.2	ENSMUST00000192413.2	1943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATTTGTGAGGAAATTG	NA	False	NA	NA	False	ATTAAA	-15	NA	129041114	129039171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_129039200_129041100
transcript_7842.known	chr1	+	2554	8	FSM	ENSMUSG00000016494.10	ENSMUST00000110815.9	2554	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.35526185435788	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTGGCCCTATAATG	1077	False	NA	NA	False	AATAAA	-43	NA	194621182	194643587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_194621353_194630146_194630315_194631612_194631873_194633246_194633328_194640724_194640882_194641117_194641171_194641373_194641539_194642087
transcript_78421.known	chr2	-	3137	9	FSM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	0	0	0	0	multi-exon	TRUE	canonical	3	256	junction_2	30.0416377715996	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	0	True	AATAAA	-20	NA	129139132	129110129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
transcript_78425.nic	chr2	-	1634	5	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	-21	13748	-21	-13748	5prime_fragment	FALSE	canonical	3	281	junction_1	16.9263108798108	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGCTGGAGCTGTCCAA	NA	False	NA	NA	False	AAGAAA	-6	NA	129139153	129123877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
transcript_78426.nic	chr2	-	1653	5	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	-103	13811	-103	-13811	5prime_fragment	FALSE	canonical	3	281	junction_1	16.9263108798108	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCATAGAGGAAATGAACAC	NA	False	NA	NA	False	TATAAA	-34	NA	129139235	129123940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
transcript_78428.nic	chr2	-	897	4	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	-16	17237	-16	-17237	5prime_fragment	FALSE	canonical	3	312	junction_1	5.79271573232759	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCACAAACAGCTCCCTC	NA	False	NA	NA	False	NA	NA	NA	129139148	129127366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_129128021_129132877_129132930_129138233_129138301_129139024
transcript_78429.known	chr2	-	682	2	FSM	ENSMUSG00000081888.2	ENSMUST00000122326.2	682	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTCTAAAAGCTCTCCT	NA	False	NA	NA	False	AATAAA	-5	NA	129221316	129220190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_129220605_129221048
transcript_78435.nic	chr2	+	3806	9	NIC	ENSMUSG00000037902.19	novel	3812	9	NA	NA	-165	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	29.9934888767546	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGGGGTGTTCCATT	NA	False	NA	NA	False	AATAAA	-20	NA	129434589	129474148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_129434813_129435523_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
transcript_78437.known	chr2	+	3812	9	FSM	ENSMUSG00000037902.19	ENSMUST00000179001.8	3812	9	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	29.9934888767546	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATAATGCCTTGGGGGT	NA	False	NA	NA	False	AATAAA	-12	NA	129434758	129474140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129434996_129435523_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
transcript_78439.known	chr2	+	3674	9	FSM	ENSMUSG00000037902.19	ENSMUST00000103203.8	3674	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	38.2130131630574	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGGGGTGTTCCATT	NA	False	NA	NA	False	AATAAA	-20	NA	129434833	129474148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129434925_129435523_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
transcript_78441.known	chr2	+	3644	8	FSM	ENSMUSG00000037902.19	ENSMUST00000049262.14	3644	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	35.4193536395697	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGGGGTGTTCCATT	NA	False	NA	NA	False	AATAAA	-20	NA	129435474	129474148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469918_129471846
transcript_78446.known	chr2	+	876	6	FSM	ENSMUSG00000037902.19	ENSMUST00000160276.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	39.9729908813439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGGCTGTGGTCTGTACT	NA	False	NA	NA	False	NA	NA	NA	129435532	129472104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129435615_129450823_129451181_129460376_129460491_129463122_129463148_129469865_129469906_129471846
transcript_78449.known	chr2	+	677	5	FSM	ENSMUSG00000037902.19	ENSMUST00000163034.8	677	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	50.9386886364382	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGTCCTAGGACCAGGGG	NA	False	NA	NA	False	NA	NA	NA	129435487	129472217	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129435615_129460376_129460491_129463122_129463148_129469865_129469906_129471846
transcript_7845.known	chr1	-	1651	10	FSM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_9	54.0893179933677	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813869	194786097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
transcript_78450.known	chr2	-	2386	4	FSM	ENSMUSG00000027400.12	ENSMUST00000028883.12	2386	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGTGTTTGCATGAATA	NA	False	NA	NA	False	AATAAA	-19	NA	129541753	129528484	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_129530536_129531656_129531806_129540355_129540416_129541627
transcript_78452.known	chr2	+	2882	4	FSM	ENSMUSG00000037885.19	ENSMUST00000165413.9	2882	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	11.4406682011537	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGGCCCATGTAGCAGC	6231	False	NA	NA	False	NA	NA	NA	129642436	129670894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129642767_129643323_129643925_129652407_129653158_129669693
transcript_78457.known	chr2	+	5445	3	FSM	ENSMUSG00000037885.19	ENSMUST00000166282.3	5445	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	55	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTTGTGATTTTTA	6231	False	NA	34	True	AATAAA	-41	NA	129642436	129674207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129642767_129643323_129643925_129669693
transcript_78460.known	chr2	+	4135	13	FSM	ENSMUSG00000027401.10	ENSMUST00000110299.3	4135	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.16024689946929	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGATGCCTGTCTTTGGG	NA	False	NA	NA	False	ACTAAA	-15	NA	129854268	129892319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_129854330_129865608_129865783_129866264_129866505_129867177_129867297_129868604_129868734_129871544_129871723_129871820_129871957_129879392_129879497_129880282_129880529_129883676_129883986_129886422_129886581_129889607_129889742_129890172
transcript_78461.known	chr2	-	1133	8	FSM	ENSMUSG00000027404.17	ENSMUST00000147570.3	1133	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	1649.031750539	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGCCCTCCAAGGCCC	NA	False	NA	NA	False	NA	NA	NA	130021323	130013706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018548_130018673_130018934_130019087_130021153
transcript_78464.known	chr2	-	1161	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	0	0	0	0	multi-exon	TRUE	canonical	3	3295	junction_4	264.518850409989	2220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCATTTGTCTTCTGA	NA	False	NA	-11	True	AATAAA	-28	NA	130021323	130013554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
transcript_78472.known	chr2	-	416	2	FSM	ENSMUSG00000027404.17	ENSMUST00000150835.2	416	2	0	0	0	0	multi-exon	FALSE	canonical	3	3369	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGTGGAAGAGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	130021254	130018771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130019087_130021153
transcript_7848.nic	chr1	-	1361	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_9	50.3432661280975	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813893	194786097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
transcript_78489.nic	chr2	+	2405	12	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-51	-1	intron_retention	FALSE	canonical	3	433	junction_11	590.287953263994	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	24	True	AATAAA	-13	NA	130116298	130121226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
transcript_78490.known	chr2	+	1877	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	0	0	0	0	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	False	NA	31	True	AATAAA	-20	NA	130116349	130121233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
transcript_78516.known	chr2	-	1616	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	0	0	0	0	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126467	130121228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
transcript_78518.known	chr2	-	1233	12	FSM	ENSMUSG00000027406.14	ENSMUST00000239288.2	1233	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	222.733469301557	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTATCTGGTTTTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	130126381	130121236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130121358_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
transcript_78521.nic	chr2	+	1511	11	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	-51	1023	-51	60	5prime_fragment	FALSE	canonical	3	1876	junction_9	242.391501501187	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTCCTGTGTGGATCCC	NA	False	NA	NA	False	AAAACA	-24	NA	130116298	130120210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075
transcript_7856.known	chr10	+	2617	4	FSM	ENSMUSG00000040653.7	ENSMUST00000043374.7	2617	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTTTTTGTGTATGTCA	NA	False	NA	NA	False	AATAAA	-16	NA	3316056	3414975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_3316970_3373493_3373578_3375733_3375767_3413388
transcript_78600.nic	chr2	+	1136	9	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	-51	1807	-51	-31	5prime_fragment	FALSE	canonical	3	1993	junction_1	213.347574394461	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGACTCATTTTTCATTC	NA	False	NA	NA	False	NA	NA	NA	130116298	130119426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395
transcript_78654.known	chr2	+	868	7	FSM	ENSMUSG00000027405.17	ENSMUST00000136621.9	868	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	915.342816775345	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCGAGCAGCTGCAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	130116374	130119457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118574_130119395
transcript_78656.known	chr2	+	2960	7	FSM	ENSMUSG00000027405.17	ENSMUST00000161543.2	2960	7	0	0	0	0	multi-exon	FALSE	canonical	3	1993	junction_1	225.275695291101	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAGAAAGCTCCCAA	NA	False	NA	NA	False	NA	NA	NA	130116365	130120903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119891_130120075
transcript_78681.known	chr2	+	3627	5	FSM	ENSMUSG00000027405.17	ENSMUST00000150745.9	3627	5	0	0	0	0	multi-exon	FALSE	canonical	3	1993	junction_1	249.795291188605	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTATTTTGTTTATT	NA	False	NA	30	True	AATAAA	-19	NA	130116363	130121232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130118095_130118355
transcript_78698.known	chr2	+	518	5	FSM	ENSMUSG00000027405.17	ENSMUST00000141872.2	518	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	1125.79505239631	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACATGATTATTCAGTCC	NA	False	NA	NA	False	NA	NA	NA	130116411	130118018	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130116440_130116553_130116644_130116951_130117067_130117582_130117745_130117895
transcript_78699.known	chr2	+	1005	6	FSM	ENSMUSG00000027405.17	ENSMUST00000150401.8	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	967.657501391892	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAACCCCAATAAAAACAC	NA	False	NA	-3	True	NA	NA	NA	130119137	130121199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
transcript_78700.known	chr2	+	946	5	FSM	ENSMUSG00000027405.17	ENSMUST00000028890.15	946	5	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	920.852152899693	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAACCCCAATAAAAACA	NA	False	NA	-4	True	NA	NA	NA	130119076	130121198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120816
transcript_78701.known	chr2	-	2366	14	FSM	ENSMUSG00000027408.8	ENSMUST00000028897.8	2366	14	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_8	18.681383322448	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCTTGAGTTCCTATTC	NA	False	NA	-3	True	ATTAAA	-19	NA	130239494	130232694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130233063_130233157_130233261_130234990_130235131_130235303_130235602_130235685_130235866_130235951_130236149_130236229_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
transcript_78717.known	chr2	+	3161	24	FSM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	83.6383654878219	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTAGGTTGTGTTCAGG	NA	False	NA	NA	False	NA	NA	NA	130266284	130286189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
transcript_78725.nic	chr2	+	3221	23	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-480	0	intron_retention	FALSE	canonical	0	0	junction_14	85.518025261509	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGTTGTATGCTGTCTG	NA	False	NA	21	True	AATAAA	-21	NA	130265778	130285654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
transcript_7873.known	chr10	+	3669	28	FSM	ENSMUSG00000040675.18	ENSMUST00000117291.8	3669	28	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_27	39.2310170953031	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923117	4106111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
transcript_7874.known	chr10	+	3535	28	FSM	ENSMUSG00000040675.18	ENSMUST00000043735.8	3535	28	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_27	66.4418431300526	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923143	4106111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105649
transcript_7876.known	chr10	+	3687	28	FSM	ENSMUSG00000040675.18	ENSMUST00000120585.8	3687	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_27	88.2256428730143	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAGAAGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	3923130	4117081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4116480
transcript_78782.known	chr2	-	1689	8	FSM	ENSMUSG00000037773.15	ENSMUST00000110277.2	1689	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	13.0868371321129	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTCGGGGAGCAGG	7648	False	NA	3	True	AATAAA	-23	NA	130266607	130260878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331_130265473_130266412
transcript_78788.known	chr2	-	3496	7	FSM	ENSMUSG00000037773.15	ENSMUST00000089581.11	3496	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_6	6.9940450861191	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATTGAAGAGTTTAAAA	8057	False	NA	NA	False	AATAAA	-22	NA	130266198	130259602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331
transcript_78802.known	chr2	-	3032	6	FSM	ENSMUSG00000037773.15	ENSMUST00000153663.8	3032	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	6.96850055607374	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGCTTTTTTGGTTTGT	8069	False	NA	NA	False	ATTAAA	-14	NA	130266186	130260144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264625_130264732_130264813_130265331
transcript_78816.known	chr2	+	5325	21	FSM	ENSMUSG00000027303.19	ENSMUST00000028769.14	5325	21	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_14	22.4438744427071	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	130292197	130398044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130292479_130345393_130345473_130345913_130346256_130359650_130359736_130360869_130360944_130361291_130361429_130374008_130374100_130375003_130375081_130377242_130377280_130379471_130379570_130381554_130381675_130382402_130382570_130383214_130383351_130384226_130384377_130385989_130386084_130386340_130386418_130386868_130387004_130391404_130391531_130391610_130391763_130394116_130394253_130395313
transcript_78828.nic	chr2	+	1124	8	ISM	ENSMUSG00000027303.19	ENSMUST00000230981.2	1386	12	-55	7560	-31	-1227	5prime_fragment	FALSE	canonical	3	7	junction_3	97.1647034258672	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCTATGTAAACATCCTGC	NA	False	NA	NA	False	AAGAAA	-14	NA	130292166	130374076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_130292479_130345393_130345473_130345913_130346256_130351749_130351777_130359650_130359736_130360869_130360944_130361291_130361429_130374008
transcript_78831.known	chr2	+	4278	4	FSM	ENSMUSG00000037740.9	ENSMUST00000145614.2	4278	4	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_2	32.273139846559	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTGCTTTTTTGTTGA	385	False	NA	NA	False	AATAAA	-14	NA	130405661	130410615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130405911_130406000_130406148_130406227_130406352_130406857
transcript_78832.known	chr2	+	1057	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_1	21	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	385	False	NA	14	True	NA	NA	NA	130405661	130407314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130405911_130406000_130406352_130406857
transcript_78835.nnic	chr2	-	2612	8	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	-2	-1330	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	70.5477114571177	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGATTCCTCCTAGCA	NA	False	NA	NA	False	AATAAA	-17	NA	130471960	130433251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_130433935_130437011_130437074_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
transcript_78837.nnic	chr2	-	3007	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	-2	-873	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGCCTATTGGCTTGA	NA	False	NA	NA	False	ATTAAA	-22	NA	130471960	130432794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
transcript_78839.nnic	chr2	-	2552	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	-2	-1328	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATTCCTCCTAGCACA	NA	False	NA	NA	False	AATAAA	-19	NA	130471960	130433249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
transcript_78844.nnic	chr2	-	2309	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	-2	-1571	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGCCAGCCCTCACTGG	NA	False	NA	NA	False	NA	NA	NA	130471960	130433492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
transcript_78846.known	chr2	-	3731	6	FSM	ENSMUSG00000027300.11	ENSMUST00000028761.5	3731	6	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_5	36.0477461153953	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGACATTTATTTCTCAT	NA	False	NA	NA	False	AATAAA	-15	NA	130471958	130431921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130471835
transcript_78850.nnic	chr2	-	2569	6	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	-2	3189	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_4	32.6398529408452	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCTAGGATTGTATTGTA	NA	False	NA	NA	False	NA	NA	NA	130471960	130438515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
transcript_78858.nnic	chr2	-	3129	3	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	-13	-9	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	92.5	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACATTGATCCACAAAGTC	NA	False	NA	-14	True	AATAAA	-16	NA	130471960	130455768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_130458626_130470408_130470556_130471835
transcript_78859.nnic	chr2	-	3166	3	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	-13	-9	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_1	74	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACATTGATCCACAAAGTC	NA	False	NA	-14	True	AATAAA	-16	NA	130471960	130455768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_130458663_130470408_130470556_130471835
transcript_78860.known	chr2	-	3015	2	FSM	ENSMUSG00000079043.4	ENSMUST00000110262.3	3015	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAAAGTCTTACTGCAT	NA	False	NA	-5	True	AATAAA	-25	NA	130471947	130455759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130458663_130471835
transcript_78863.known	chr2	-	1238	9	FSM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	130.411607995608	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGCCAGAAGTCCCACT	NA	False	NA	71	True	AATAAA	-18	NA	130506579	130495879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130504110_130505267_130505475_130506394
transcript_78873.known	chr2	-	3196	21	FSM	ENSMUSG00000074796.11	ENSMUST00000099362.11	3196	21	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_7	21.856063231973	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	-1	True	AATAAA	-22	NA	130539439	130526032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538567_130538676_130539278
transcript_78876.nic	chr2	-	3045	20	NIC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_19	27.8455375458768	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	-1	True	AATAAA	-22	NA	130539396	130526032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130539278
transcript_78889.known	chr2	-	6628	37	FSM	ENSMUSG00000027309.19	ENSMUST00000044766.15	6628	37	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	14.9720933822533	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTCTCTGCCTGTCTC	NA	False	NA	NA	False	AATAAA	-18	NA	130682054	130548119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130551239_130551857_130551952_130552731_130552798_130554179_130554383_130554871_130554947_130555316_130555424_130559180_130559268_130561759_130561896_130569067_130569106_130572708_130572835_130578386_130578546_130579298_130579388_130580900_130581019_130581290_130581390_130582320_130582410_130583736_130583884_130590604_130590709_130606372_130606461_130607607_130607659_130609529_130609601_130612591_130612710_130616978_130617025_130617646_130617692_130619124_130619202_130620336_130620425_130626343_130626381_130627378_130627461_130633771_130633908_130635908_130635965_130640086_130640186_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
transcript_78892.known	chr2	-	2108	21	FSM	ENSMUSG00000027309.19	ENSMUST00000148924.8	2108	21	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	17.6818409675011	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGCTGAAAAACACCTC	NA	False	NA	NA	False	NA	NA	NA	130682052	130590370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130590709_130606372_130606461_130607607_130607659_130609529_130609601_130612591_130612710_130616978_130617025_130617646_130617692_130619124_130619202_130620336_130620425_130626343_130626381_130627378_130627461_130633771_130633908_130635908_130635965_130640086_130640186_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
transcript_78895.nic	chr2	-	1337	8	Fusion	ENSMUSG00000089662.2_ENSMUSG00000027309.19	novel	1984	7	NA	NA	-11	115	multi-exon	TRUE	canonical	3	31	junction_1	16.7063473211928	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGGTGTGTATGTGT	NA	False	NA	1	True	AATAAA	-32	NA	130682076	130645305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr2_-_130645843_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
transcript_78896.known	chr2	-	1984	7	FSM	ENSMUSG00000027309.19	ENSMUST00000110243.8	1984	7	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	9.03081145609604	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAATAGATATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	130682065	130647595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
transcript_78898.known	chr2	-	3055	4	FSM	ENSMUSG00000085566.2	ENSMUST00000128176.2	3055	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAGAGAAAGAAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	130748276	130721618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130724251_130725230_130725349_130725748_130725908_130748130
transcript_78899.known	chr2	+	8745	29	FSM	ENSMUSG00000027312.15	ENSMUST00000028781.9	8745	29	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_19	8.33811937392825	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGCGTTTCGTTCTGAATG	NA	False	NA	19	True	AATAAA	-22	NA	130748414	130872253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_130748888_130775305_130775390_130777443_130777558_130786801_130786931_130787933_130788140_130789478_130789648_130798940_130799032_130799824_130800069_130802304_130802489_130803439_130803595_130806763_130806849_130811924_130812146_130814144_130814267_130815296_130815436_130817797_130817989_130821849_130822070_130823823_130824010_130824514_130824749_130828637_130828776_130836040_130836135_130836950_130837004_130841065_130841161_130844681_130844761_130846367_130846526_130855526_130855589_130860532_130860612_130862860_130862969_130864921_130865037_130867736
transcript_78901.nic	chr2	-	1145	4	ISM	ENSMUSG00000027316.16	ENSMUST00000110239.8	810	6	1141	-572	-30	3	intron_retention	FALSE	canonical	3	10	junction_1	4.18993502999218	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACCTGGTTTTCTGTCAT	NA	False	NA	-2	True	AATAAA	-17	NA	130883461	130881555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_130882179_130882318_130882396_130882935_130883071_130883151
transcript_78903.known	chr2	-	1125	4	FSM	ENSMUSG00000027316.16	ENSMUST00000156509.2	1125	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	6.48074069840786	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAACCTGGTTTTCTGT	NA	False	NA	-5	True	AATAAA	-14	NA	130883377	130881558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130882246_130882318_130882396_130882935_130883071_130883151
transcript_78905.known	chr2	-	1791	2	FSM	ENSMUSG00000027316.16	ENSMUST00000136569.2	1791	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCAACCTGGTTTTCTG	NA	False	NA	-6	True	AATAAA	-13	NA	130883431	130881559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130883071_130883151
transcript_78907.known	chr2	+	3089	16	FSM	ENSMUSG00000027330.17	ENSMUST00000028804.15	3089	16	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_7	16.6951756171922	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATCTGTTTGTTATGCA	NA	False	NA	NA	False	AATAAA	-16	NA	131028868	131040415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033642_131033732_131033856_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
transcript_78911.known	chr2	+	3004	15	FSM	ENSMUSG00000027330.17	ENSMUST00000079857.9	3004	15	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	17.0899481137484	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTGTTTGTTATGCAGA	NA	False	NA	NA	False	AATAAA	-18	NA	131028877	131040417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033687_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
transcript_78916.known	chr2	-	874	7	FSM	ENSMUSG00000027327.17	ENSMUST00000184121.8	874	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	340.164380198097	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACGGTGTGGCTTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	131001944	130988713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130991360_130991463_130993537_130993677_130995513_130995631_131001872
transcript_78921.known	chr2	-	2600	7	FSM	ENSMUSG00000027329.10	ENSMUST00000110218.9	2600	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTATTACTGTGTACAA	8032	False	NA	NA	False	NA	NA	NA	131017121	131012235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_131013711_131013821_131013946_131014123_131014179_131014289_131014330_131014542_131014700_131015115_131015228_131016484
transcript_78923.known	chr2	-	832	6	FSM	ENSMUSG00000027327.17	ENSMUST00000028800.12	832	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	282.042124513343	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTGTGTGACGGTGTG	NA	False	NA	NA	False	NA	NA	NA	131002001	130988723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995504_130995631_131001872
transcript_78932.known	chr2	+	1521	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110208.8	1521	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	10	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	11	True	ATTAAA	-17	NA	131052359	131055434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131052602_131053182_131053394_131054366
transcript_78933.known	chr2	+	1101	4	FSM	ENSMUSG00000068264.12	ENSMUST00000110210.8	1101	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	23.6126143312331	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTTGTCCTCTTTTTGT	NA	False	NA	8	True	ATTAAA	-14	NA	131052343	131055431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131052602_131053182_131053394_131054366_131054657_131055089
transcript_78937.nnic	chr2	+	2990	8	NNC	ENSMUSG00000037523.14	novel	2867	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	77.1359785293054	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7255	False	NA	14	True	ATTAAA	-19	NA	131075977	131089945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_131076048_131079346_131079461_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
transcript_78939.known	chr2	+	3057	7	FSM	ENSMUSG00000037523.14	ENSMUST00000110199.3	3057	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	57.107111835762	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7302	False	NA	14	True	ATTAAA	-19	NA	131076024	131089945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131076276_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
transcript_78944.known	chr2	+	2867	7	FSM	ENSMUSG00000037523.14	ENSMUST00000041362.12	2867	7	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_4	7.24377127070024	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7264	False	NA	14	True	ATTAAA	-19	NA	131075986	131089945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131076048_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
transcript_78952.known	chr2	+	1398	7	FSM	ENSMUSG00000037514.19	ENSMUST00000184105.9	1398	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	197.100651106653	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACACCCCATCCCACCCCC	894	False	NA	NA	False	GATAAA	-20	NA	131104444	131138408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131104736_131115830_131116041_131122076_131122331_131124511_131124689_131129393_131129518_131135318_131135445_131138192
transcript_78957.known	chr2	+	4266	7	FSM	ENSMUSG00000037514.19	ENSMUST00000150843.9	4266	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_2	97.0093065409477	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTGCTTGCATGTA	869	False	NA	5	True	AATAAA	-19	NA	131104419	131141108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131104736_131115830_131116184_131122076_131122331_131124511_131124689_131129393_131129518_131135318_131135445_131138192
transcript_78978.known	chr2	-	5978	6	FSM	ENSMUSG00000048911.16	ENSMUST00000059372.11	5978	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	4.63033476111609	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAATGACCCGTGCTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	131194801	131139983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_131145501_131146171_131146252_131147571_131147614_131150394_131150438_131155082_131155233_131194655
transcript_78981.known	chr2	+	3622	5	FSM	ENSMUSG00000037514.19	ENSMUST00000184932.9	3622	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	240.508315864546	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTGTTTGCTTGCATG	937	False	NA	3	True	AATAAA	-17	NA	131104487	131141106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131104736_131115830_131116041_131129393_131129518_131135318_131135445_131138192
transcript_78985.known	chr2	+	1304	5	FSM	ENSMUSG00000037514.19	ENSMUST00000131779.8	1304	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	223.522929472571	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGTTTCTGGCTGTTGTGA	864	False	NA	NA	False	NA	NA	NA	131104414	131125357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131104736_131115830_131116184_131122076_131122331_131124511_131124689_131125158
transcript_78987.nic	chr2	+	1387	5	NIC	ENSMUSG00000037514.19	novel	4266	7	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_2	217.555165417877	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTGGAGGTCATCTTT	820	False	NA	13	True	NA	NA	NA	131104370	131138611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_131104736_131115830_131116184_131129393_131129518_131135318_131135445_131138192
transcript_78994.known	chr2	+	558	4	FSM	ENSMUSG00000037514.19	ENSMUST00000145904.2	558	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	262.90725022757	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACTTCCTGAAACCTGC	1165	False	NA	-27	True	NA	NA	NA	131104715	131138251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131104736_131115830_131116184_131135318_131135445_131138192
transcript_78997.nic	chr2	+	795	2	ISM	ENSMUSG00000037514.19	ENSMUST00000131779.8	1304	5	-44	9097	-44	-9097	5prime_fragment	FALSE	canonical	3	620	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCATTTCTAATGGAGCT	820	False	NA	2	True	ATTAAA	-14	NA	131104370	131116260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_131104736_131115830
transcript_79005.known	chr2	+	1617	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110180.2	1617	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	45.6709616134134	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCTCCTTTGCTTCTCTC	NA	False	NA	15	True	AATAAA	-16	NA	131333912	131367087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131362567_131362974_131363092_131363978_131364140_131366662
transcript_79007.known	chr2	+	2170	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110186.9	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	48.183746942177	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366163_131366254_131366662
transcript_79009.known	chr2	+	2270	7	FSM	ENSMUSG00000027333.19	ENSMUST00000028806.12	2270	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_6	10.8269211792745	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTCAGTTCAAAGGCTC	NA	False	NA	31	True	AATAAA	-32	NA	131333683	131367103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366662
transcript_79013.known	chr2	+	1437	7	FSM	ENSMUSG00000027333.19	ENSMUST00000183947.8	1437	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	49.4705299479734	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362974_131363092_131363978_131364140_131366662
transcript_79016.known	chr2	+	1919	6	FSM	ENSMUSG00000027333.19	ENSMUST00000110189.9	1919	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	55.41335579082	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131366662
transcript_79018.known	chr2	+	1320	6	FSM	ENSMUSG00000027333.19	ENSMUST00000110179.9	1320	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	49.3128786423993	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131363978_131364140_131366662
transcript_79019.known	chr2	+	2223	6	FSM	ENSMUSG00000027333.19	ENSMUST00000151627.8	2223	6	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	11.7234807118023	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131363092_131363978_131364140_131366662
transcript_79023.known	chr2	+	2184	3	FSM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	0.5	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCGGGGTTTGTTCT	NA	False	NA	7	True	ATTAAA	-17	NA	131751847	131780349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131751924_131754114_131754213_131778339
transcript_79024.known	chr2	+	1969	3	FSM	ENSMUSG00000027338.17	ENSMUST00000110170.8	1969	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	7	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGGTGTCTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	131792780	131798050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131792836_131794928_131795503_131796710
transcript_79025.known	chr2	+	1938	3	FSM	ENSMUSG00000027338.17	ENSMUST00000110171.9	1938	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGGTGTCTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	131792781	131798050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131792836_131794928_131795503_131796740
transcript_79026.known	chr2	+	1918	3	FSM	ENSMUSG00000027338.17	ENSMUST00000110169.2	1918	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGGTGTCTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	131792956	131798050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131792991_131794928_131795503_131796740
transcript_79027.known	chr2	+	3176	2	FSM	ENSMUSG00000027338.17	ENSMUST00000110172.9	3176	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGGTGTCTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	131792781	131798050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_131792836_131794928
transcript_79029.known	chr2	-	8233	11	FSM	ENSMUSG00000027339.16	ENSMUST00000028814.15	8233	11	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_10	8.85494212290515	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTCACTTGGGTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	131871921	131831334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_131838374_131840164_131840263_131842352_131842475_131843605_131843658_131844801_131844904_131846218_131846380_131847227_131847317_131849285_131849438_131851605_131851682_131854481_131854573_131871670
transcript_79032.known	chr2	-	6364	16	FSM	ENSMUSG00000027340.16	ENSMUST00000028815.15	6364	16	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	16.3644601363918	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTGTCATTTGCCTC	7599	False	NA	-1	True	AATAAA	-17	NA	131987028	131894415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_131898822_131900119_131900216_131902582_131902721_131903978_131904109_131907283_131907390_131908637_131908786_131913230_131913388_131913836_131913958_131917418_131917601_131919348_131919414_131920332_131920422_131931015_131931174_131933132_131933250_131936061_131936161_131943391_131943647_131986931
transcript_79040.known	chr2	-	1612	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4870	False	NA	-2	True	TATAAA	-20	NA	132089727	132081411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
transcript_79041.known	chr2	-	1551	4	FSM	ENSMUSG00000027341.11	ENSMUST00000110163.8	1551	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	223.123782287371	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4908	False	NA	-2	True	TATAAA	-20	NA	132089689	132081411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089515
transcript_79042.known	chr2	-	1531	4	FSM	ENSMUSG00000027341.11	ENSMUST00000180286.2	1531	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	263.641591728029	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTGTTATTG	4889	False	NA	-4	True	TATAAA	-18	NA	132089708	132081413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089552
transcript_79047.known	chr2	-	359	3	FSM	ENSMUSG00000027341.11	ENSMUST00000143782.2	359	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGGGAAAGCTGAAGTG	4918	False	NA	NA	False	NA	NA	NA	132089679	132087239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132087293_132087875_132087995_132089492
transcript_79048.known	chr2	-	2957	3	FSM	ENSMUSG00000027341.11	ENSMUST00000110164.8	2957	3	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_2	10	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	5023	False	NA	-2	True	TATAAA	-20	NA	132089574	132081411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132082547_132085938_132086062_132087875
transcript_79051.known	chr2	-	1518	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGTGCAAAGTTTTC	8225	False	NA	-10	True	AATAAA	-27	NA	132095234	132091081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
transcript_79060.known	chr2	-	824	2	FSM	ENSMUSG00000027342.15	ENSMUST00000135181.2	824	2	0	0	0	0	multi-exon	FALSE	canonical	3	2527	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAAGTTTTCTGCAAGTG	8572	False	NA	NA	False	NA	NA	NA	132094887	132093248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132093921_132094735
transcript_79065.nnic	chr2	+	3834	14	NNC	ENSMUSG00000058793.15	novel	8396	13	NA	NA	-7	2288	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	118.061161563922	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGAGTCCCGTGTTTGTC	5237	False	NA	15	True	AATAAA	-20	NA	132105060	132149536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
transcript_79066.nnic	chr2	+	3830	14	NNC	ENSMUSG00000058793.15	novel	8396	13	NA	NA	-7	2284	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	118.061161563922	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCAGGAGTCCCGTGTT	5237	False	NA	11	True	AATAAA	-16	NA	132105060	132149532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147715_132147849
transcript_79070.nnic	chr2	+	3554	14	NNC	ENSMUSG00000058793.15	novel	8073	13	NA	NA	-50	2288	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	131.49004957066	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGAGTCCCGTGTTTGTC	NA	False	NA	15	True	AATAAA	-20	NA	132127808	132149536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
transcript_79072.nnic	chr2	+	3556	14	NNC	ENSMUSG00000058793.15	novel	627	5	NA	NA	3409	2288	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.186787055044	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGAGTCCCGTGTTTGTC	NA	False	NA	15	True	AATAAA	-20	NA	132131267	132149536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_132131347_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
transcript_79074.known	chr2	+	8396	13	FSM	ENSMUSG00000058793.15	ENSMUST00000103181.11	8396	13	0	0	0	0	multi-exon	FALSE	canonical	2	258	junction_5	60.9331942923286	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	5244	False	NA	NA	False	AATAAA	-17	NA	132105067	132153970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
transcript_79078.known	chr2	+	8073	13	FSM	ENSMUSG00000058793.15	ENSMUST00000089461.11	8073	13	0	0	0	0	multi-exon	FALSE	canonical	2	123	junction_1	89.520132744912	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	NA	False	NA	NA	False	AATAAA	-17	NA	132127858	132153970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
transcript_79079.nnic	chr2	+	1460	13	NNC	ENSMUSG00000058793.15	novel	627	5	NA	NA	3409	57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.581213686209	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGTCATTTTTTTTTCT	NA	False	NA	12	True	AATGAA	-14	NA	132131267	132147305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_132131347_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
transcript_79082.known	chr2	+	1247	4	FSM	ENSMUSG00000058793.15	ENSMUST00000110158.8	1247	4	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	90.9322091817122	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTCTGAGCCCTTTCTT	5244	False	NA	NA	False	AATAAA	-16	NA	132105067	132138113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450
transcript_79086.known	chr2	-	3703	20	FSM	ENSMUSG00000027346.16	ENSMUST00000110142.8	3703	20	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_19	19.1733598654971	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCTTCCTGATTTGT	NA	False	NA	-1	True	NA	NA	NA	132420168	132371002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414178_132419987
transcript_79088.known	chr2	-	3612	19	FSM	ENSMUSG00000027346.16	ENSMUST00000149854.8	3612	19	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_15	20.2402239776804	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGCTTCCTGATTTGTT	NA	False	NA	0	True	NA	NA	NA	132420155	132371001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132406546_132406632_132410539_132410637_132414104_132414175_132419987
transcript_79090.known	chr2	-	3577	19	FSM	ENSMUSG00000027346.16	ENSMUST00000145694.8	3577	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	23.6976844209214	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGCTTCCTGATTTGTT	NA	False	NA	0	True	NA	NA	NA	132420168	132371001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414175_132419987
transcript_79099.known	chr2	-	3686	20	FSM	ENSMUSG00000027346.16	ENSMUST00000060955.12	3686	20	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_16	14.3132737727671	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGCTTCCTGATTTGTT	NA	False	NA	0	True	NA	NA	NA	132420153	132371001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414175_132419987
transcript_79100.nic	chr2	-	555	4	ISM	ENSMUSG00000027346.16	ENSMUST00000060955.12	3686	20	12	35396	-4	149	5prime_fragment	FALSE	canonical	3	81	junction_3	12.8322510366134	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGGAAGAAAGAGAACCA	NA	False	NA	NA	False	AATAGA	-38	NA	132420141	132406397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_132406632_132410539_132410637_132414104_132414175_132419987
transcript_79102.known	chr2	+	1076	3	FSM	ENSMUSG00000044991.11	ENSMUST00000061891.11	1076	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	20.5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	27	True	NA	NA	NA	132528850	132592975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_132528902_132533869_132534052_132592132
transcript_79105.known	chr2	-	2948	11	FSM	ENSMUSG00000037376.15	ENSMUST00000147336.8	2948	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	111.30929880293	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTAATGATACAATGCT	NA	False	NA	-12	True	AATAAA	-23	NA	132657975	132646126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652006_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
transcript_79106.known	chr2	-	2828	11	FSM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_5	30.9683709613535	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTAATGATACAATGCT	NA	False	NA	-12	True	AATAAA	-23	NA	132657974	132646126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
transcript_79114.nic	chr2	-	1162	7	ISM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	-33	4471	-32	1739	5prime_fragment	FALSE	canonical	3	339	junction_1	39.2215926924613	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGCAAAAGAGATTATGTA	NA	False	NA	NA	False	AAGAAA	-4	NA	132658007	132650597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
transcript_79116.nic	chr2	-	614	4	ISM	ENSMUSG00000037376.15	ENSMUST00000147336.8	2948	11	-32	6210	-32	0	5prime_fragment	FALSE	canonical	3	367	junction_2	42.9055810925442	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTCACATTACTTGAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	132658007	132652336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_132652429_132652908_132653019_132653967_132654096_132657723
transcript_79118.known	chr2	+	3179	19	FSM	ENSMUSG00000027353.15	ENSMUST00000028831.15	3179	19	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	21.8867032185704	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGTTCAGGTCACAAAA	NA	False	NA	2	True	ATTAAA	-14	NA	132658060	132685815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
transcript_79126.known	chr2	+	3397	18	FSM	ENSMUSG00000027353.15	ENSMUST00000066559.6	3397	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	44.3952832682774	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGAAGAAGTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	132658060	132686117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_132658386_132658993_132659166_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
transcript_79128.nic	chr2	+	676	4	ISM	ENSMUSG00000027353.15	ENSMUST00000028831.15	3179	19	-18	24216	-18	1654	5prime_fragment	FALSE	canonical	3	131	junction_1	22.3954360429878	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAGGTAAGAGCTTTCTA	NA	False	NA	NA	False	NA	NA	NA	132658042	132661599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_132658386_132658993_132659166_132659624_132659709_132661522
transcript_79129.known	chr2	+	735	3	FSM	ENSMUSG00000027353.15	ENSMUST00000135685.2	735	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	25.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGGAGAACCAACCAAGAAA	NA	False	NA	NA	False	NA	NA	NA	132658143	132659945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_132658386_132658993_132659166_132659624
transcript_79130.known	chr2	+	1924	7	FSM	ENSMUSG00000027357.17	ENSMUST00000028835.13	1924	7	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_2	81.1632442810305	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGTTGTCCTGTGGTG	1622	False	NA	13	True	AATAAA	-28	NA	132688585	132708705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_132689046_132691785_132691924_132696812_132696943_132703128_132703215_132704254_132704324_132706009_132706102_132707756
transcript_79132.known	chr2	+	1772	6	FSM	ENSMUSG00000027357.17	ENSMUST00000124834.8	1772	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	279.759611094954	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGTTGTCCTGTGGTG	1644	False	NA	13	True	AATAAA	-28	NA	132688607	132708705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_132689046_132691785_132691924_132703128_132703215_132704254_132704324_132706009_132706102_132707756
transcript_79135.known	chr2	-	3715	5	FSM	ENSMUSG00000043110.3	ENSMUST00000049787.3	3715	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	2.48746859276655	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGATGTATTTTGTAACAA	NA	False	NA	NA	False	AATAAA	-21	NA	132722811	132710224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_132712824_132713946_132714079_132719932_132720138_132721154_132721836_132722713
transcript_79139.nic	chr2	-	3530	4	ISM	ENSMUSG00000043110.3	ENSMUST00000049787.3	3715	5	867	196	867	-196	3prime_fragment	FALSE	canonical	3	9	junction_1	2.86744175568088	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAGAAAGTTACAAAG	NA	False	NA	NA	False	NA	NA	NA	132721944	132710420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_132712824_132713946_132714079_132719932_132720138_132721154
transcript_79141.known	chr2	+	3555	3	FSM	ENSMUSG00000027358.7	ENSMUST00000028836.7	3555	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGTGAGAGCAAATGGTTT	NA	False	NA	NA	False	AATAAA	-37	NA	133394078	133404805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_133395272_133396338_133396689_133402793
transcript_79142.known	chr2	-	5488	8	FSM	ENSMUSG00000034723.12	ENSMUST00000038228.11	5488	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	5.36808406515884	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGATGTAATGGAGATTT	2692	False	NA	NA	False	AATAAA	-41	NA	134486065	134436104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_134440786_134441929_134441994_134442807_134442910_134451450_134451497_134462474_134462604_134463307_134463354_134481641_134481758_134485761
transcript_79153.known	chr2	+	412	4	FSM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	289.483831826389	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135490826	135493983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_135490892_135491052_135491123_135493417_135493478_135493766
transcript_79168.known	chr2	+	2875	11	FSM	ENSMUSG00000074771.11	ENSMUST00000121717.2	2875	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.4	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTGTCCTGGGCTCTA	NA	False	NA	NA	False	ATTAAA	-23	NA	136374199	136397885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_136374392_136375572_136375745_136379005_136379398_136386502_136386703_136387630_136387781_136388737_136388862_136391632_136392456_136394235_136394463_136395541_136395703_136396605_136396744_136397589
transcript_79177.known	chr2	+	4906	8	FSM	ENSMUSG00000027281.17	ENSMUST00000135260.8	4906	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	8.59995253902424	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTTGTTGTGCAATTT	9751	False	NA	15	True	AATAAA	-23	NA	136733527	136913870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_136733582_136734203_136734282_136747462_136747521_136842103_136842194_136885919_136885998_136888636_136888726_136908049_136908151_136909512
transcript_79179.known	chr2	+	5089	8	FSM	ENSMUSG00000027281.17	ENSMUST00000099311.9	5089	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	4.68170560233541	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTTGTTGTGCAATTT	NA	False	NA	15	True	AATAAA	-23	NA	136734087	136913870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_136734282_136747462_136747521_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
transcript_79182.known	chr2	+	2556	6	FSM	ENSMUSG00000027281.17	ENSMUST00000028737.13	2556	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	10.0598210719674	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGGCTAAGGTCATATTC	9361	False	NA	NA	False	AATAGA	-17	NA	136733137	136911569	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_136733310_136747462_136747521_136842103_136842194_136885919_136885998_136908049_136908151_136909512
transcript_79188.known	chr2	-	3178	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733309	136715699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
transcript_79189.known	chr2	-	2935	6	FSM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	104.732802884292	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733302	136715699	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136733198
transcript_79191.known	chr2	-	944	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	8.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCTGCCTTCACAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	136733309	136723190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_136723560_136727392_136727621_136732962
transcript_79196.known	chr2	-	5612	26	FSM	ENSMUSG00000027276.8	ENSMUST00000028735.8	5612	26	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_14	16.9906327133512	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGTGTGGAGTCTTGTG	NA	False	NA	-1	True	AATAAA	-44	NA	136958564	136923375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_136925402_136926201_136926353_136926494_136926627_136926841_136927076_136927165_136927276_136927837_136927952_136928996_136929083_136929535_136929564_136930031_136930149_136930315_136930430_136930516_136930631_136931131_136931246_136931684_136931850_136932774_136932926_136933355_136933530_136933869_136933917_136934416_136934531_136935126_136935241_136936372_136936487_136937366_136937487_136938112_136938244_136941975_136942037_136943500_136943756_136948786_136948839_136957323_136957630_136958096
transcript_79200.known	chr2	+	4657	5	FSM	ENSMUSG00000062098.12	ENSMUST00000091556.12	4657	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	2.87228132326901	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGCTTTTTTAGTATTT	NA	False	NA	16	True	AATAAA	-17	NA	138098484	138129342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_138098675_138120885_138121178_138121668_138121760_138122292_138122412_138125377
transcript_79204.known	chr2	-	2480	14	FSM	ENSMUSG00000039033.12	ENSMUST00000046656.9	2480	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_13	23.0823070642491	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908680	139675399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908406
transcript_79205.known	chr2	-	2258	14	FSM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	20.460092487948	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908725	139675399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_79221.nic	chr2	-	2028	10	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	13	19070	13	9857	5prime_fragment	FALSE	canonical	3	379	junction_4	14.7857121556798	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACTGAAAAAGAAACAGAAG	6990	False	NA	NA	False	AAGAAA	-11	NA	140012471	139980872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
transcript_79225.nic	chr2	-	1901	9	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	-19	28927	-19	0	5prime_fragment	FALSE	canonical	3	379	junction_3	15.6823945875622	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAGAAAGGAAAA	6958	False	NA	NA	False	AATACA	-25	NA	140012503	139990729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
transcript_79226.nic	chr2	-	1785	9	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	13	29011	13	-84	5prime_fragment	FALSE	canonical	3	379	junction_3	15.6823945875622	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGATGGGAAGACAAAG	6990	False	NA	NA	False	NA	NA	NA	140012471	139990813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
transcript_79227.nic	chr2	-	1018	3	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	-85	44539	-85	-5059	5prime_fragment	FALSE	canonical	3	408	junction_1	13	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGACGAAGAAGAAGA	6892	False	NA	-16	True	NA	NA	NA	140012569	140006341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_140006503_140009691_140010376_140012396
transcript_79228.known	chr2	-	3396	14	FSM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	0	0	0	0	multi-exon	TRUE	canonical	3	379	junction_8	12.585330053057	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCGTTTGTATAGCATT	6977	False	NA	-12	True	AATAAA	-16	NA	140012484	139961802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
transcript_7923.known	chr10	+	5956	3	FSM	ENSMUSG00000038587.11	ENSMUST00000239373.2	5956	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	774.5	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4284544	4309470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_4284710_4303141_4307940_4308477
transcript_79232.known	chr2	+	1166	11	FSM	ENSMUSG00000027384.7	ENSMUST00000044825.5	1166	11	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_10	17.7042367810646	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGTTTGAAGCAAGGTG	NA	False	NA	10	True	AATAAA	-21	NA	140012568	140045609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
transcript_7924.nic	chr10	+	705	2	ISM	ENSMUSG00000038587.11	ENSMUST00000239373.2	5956	3	-29	5818	-29	0	5prime_fragment	FALSE	canonical	3	114	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCGAGAGAAAGAACCTACCA	NA	False	NA	NA	False	AAGAAA	-2	NA	4284515	4303652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_4284710_4303141
transcript_79240.known	chr2	+	3552	4	FSM	ENSMUSG00000068205.15	ENSMUST00000043836.8	3552	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	7.40870359029762	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTGTATTATTTGGT	NA	False	NA	NA	False	AATAAA	-22	NA	140237354	140264874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261824
transcript_79241.known	chr2	+	1049	4	FSM	ENSMUSG00000068205.15	ENSMUST00000124403.2	1049	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	35.6495285928003	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGATTCCTGTTTATGCT	NA	False	NA	NA	False	AATAAA	-17	NA	140237379	140262415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_140237623_140242781_140242899_140260736_140260835_140261824
transcript_79242.known	chr2	-	3334	3	FSM	ENSMUSG00000051379.13	ENSMUST00000056760.4	3334	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	29	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATACA	-5	NA	140513320	140501244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_140503672_140504627_140505380_140513165
transcript_79243.known	chr2	-	3977	3	FSM	ENSMUSG00000051379.13	ENSMUST00000110057.3	3977	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	10.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGTATCCTTTTTACT	NA	False	NA	1	True	AATAAA	-36	NA	140513389	140500117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_140503672_140505180_140505380_140513165
transcript_79245.known	chr2	-	6383	26	FSM	ENSMUSG00000038844.11	ENSMUST00000043589.8	6383	26	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_14	9.18050107564941	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGTTACCTTCCATTGG	NA	False	NA	NA	False	AATAAA	-29	NA	142743451	142459393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_142461837_142490347_142490432_142514208_142514299_142532498_142532622_142544542_142544594_142545861_142545959_142549178_142549332_142553614_142554959_142556598_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
transcript_79252.nic	chr2	-	3052	19	ISM	ENSMUSG00000038844.11	ENSMUST00000211861.2	4523	23	-39	13008	36	-12719	5prime_fragment	FALSE	canonical	3	64	junction_7	8.82214525575159	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGGTGAGAAGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	142743403	142553856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_142554959_142556598_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
transcript_79253.nic	chr2	-	2943	19	ISM	ENSMUSG00000038844.11	ENSMUST00000211861.2	4523	23	-38	13116	37	-12827	5prime_fragment	FALSE	canonical	3	64	junction_7	8.82214525575159	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGTGGGAGAGAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	142743402	142553964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_142554959_142556598_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
transcript_79254.nic	chr2	-	2831	19	ISM	ENSMUSG00000038844.11	ENSMUST00000211861.2	4523	23	-80	13270	-5	-12981	5prime_fragment	FALSE	canonical	3	64	junction_7	8.82214525575159	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGCAGAGACCAGGCTAC	NA	False	NA	NA	False	AATAAA	-1	NA	142743444	142554118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_142554959_142556598_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
transcript_79257.nic	chr2	-	2034	18	ISM	ENSMUSG00000038844.11	ENSMUST00000211861.2	4523	23	-137	15764	-50	-15475	5prime_fragment	FALSE	canonical	3	64	junction_6	9.07790198769902	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCGAAAGTAAAAGGTAAGC	NA	False	NA	NA	False	NA	NA	NA	142743501	142556612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
transcript_79258.known	chr2	+	2061	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	0	0	0	0	multi-exon	FALSE	canonical	3	784	junction_1	113.59540777103	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACTATTCTGACAGA	1988	False	NA	NA	False	AATAAA	-19	NA	142904958	142914773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
transcript_79259.nnic	chr2	+	877	7	NNC	ENSMUSG00000008333.13	novel	2061	7	NA	NA	5	-1113	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_3	371.205431294078	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTACTGGTTTATTG	1993	False	NA	13	True	AATAAA	-13	NA	142904963	142913660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_142905019_142906461_142906551_142907095_142907269_142910246_142910322_142911293_142911345_142912807_142912897_142913315
transcript_79261.nic	chr2	+	467	4	ISM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	-55	4503	-55	-1074	5prime_fragment	FALSE	canonical	3	784	junction_1	137.998389684646	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTAAAACCATGGAACAGGC	1933	False	NA	NA	False	AAAAAG	-13	NA	142904903	142910270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180
transcript_79264.known	chr2	+	1911	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	143757239	143785244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
transcript_79268.nic	chr2	+	480	2	ISM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	-57	4845	-57	-4845	5prime_fragment	FALSE	canonical	3	1678	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGCTGTCATTTTCTGTC	NA	False	NA	NA	False	AAGAAA	-14	NA	143757182	143780399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_143757568_143780304
transcript_7927.known	chr10	+	6195	4	FSM	ENSMUSG00000038587.11	ENSMUST00000045730.7	6195	4	0	0	0	0	multi-exon	FALSE	canonical	3	1052	junction_2	280.358104335628	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4216379	4309470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_4216669_4263742_4263858_4303141_4307940_4308477
transcript_79272.known	chr2	-	5177	24	FSM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_23	53.514586460919	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTTCTGTCTGATCTT	9758	False	NA	-1	True	ATTAAA	-20	NA	143853183	143789314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143830067_143832187_143852918
transcript_79273.nnic	chr2	-	3119	23	NIC	ENSMUSG00000027422.16	novel	5177	24	NA	NA	-61	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_22	85.5170105353847	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTTCTGTCTGATCTT	9697	False	NA	-1	True	ATTAAA	-20	NA	143853244	143789314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143852918
transcript_79276.nic	chr2	-	1613	2	ISM	ENSMUSG00000027422.16	ENSMUST00000037875.6	2701	3	-33	3099	-33	-3099	5prime_fragment	FALSE	canonical	3	227	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAGGAGCCCAGAATCAA	9725	False	NA	NA	False	AAAACA	-12	NA	143853216	143830871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_143832187_143852918
transcript_79277.nic	chr2	-	754	2	ISM	ENSMUSG00000027422.16	ENSMUST00000037875.6	2701	3	-33	3958	-33	-3958	5prime_fragment	FALSE	canonical	3	227	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGCAAAGGTGGAGCCAGC	9725	False	NA	NA	False	NA	NA	NA	143853216	143831730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_143832187_143852918
transcript_79278.nic	chr2	-	526	2	ISM	ENSMUSG00000027422.16	ENSMUST00000037875.6	2701	3	-33	4186	-33	-4186	5prime_fragment	FALSE	canonical	3	227	junction_1	0	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAGACCAAGAAAAAGGA	9725	False	NA	38	True	AAAAAG	-25	NA	143853216	143831958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_143832187_143852918
transcript_7929.known	chr10	-	3086	3	FSM	ENSMUSG00000075327.11	ENSMUST00000100077.5	3086	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	37	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGATCGTTTTCTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	4337475	4317074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_4319852_4324569_4324755_4337351
transcript_79291.known	chr2	-	2512	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	0	0	0	0	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112826	144092042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
transcript_793.nic	chr1	-	3378	13	ISM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	-70	8095	-2	7903	5prime_fragment	FALSE	canonical	3	234	junction_5	31.6503247306494	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAACTGCTGTCTGTTTC	NA	False	NA	-4	True	AATAAA	-13	NA	33853678	33808720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
transcript_7930.known	chr10	-	3226	3	FSM	ENSMUSG00000075327.11	ENSMUST00000100078.10	3226	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	10.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGATCGTTTTCTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	4338108	4317074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_4319852_4324569_4324755_4337844
transcript_79320.known	chr2	+	2308	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110028.8	2308	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	188.862383761299	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112582	144122436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144112935_144113834_144114405_144118234_144118452_144120913_144121047_144121400
transcript_79325.known	chr2	+	2840	5	FSM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	65.1517459474418	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGTGTATTTATAGGG	NA	False	NA	NA	False	AATAAA	-20	NA	144112819	144123147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144112993_144113834_144114405_144118234_144118452_144120913_144121047_144121400
transcript_79328.known	chr2	+	2359	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	194.922420465169	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112860	144122436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913_144121047_144121400
transcript_7934.known	chr10	-	3139	13	FSM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	17.5220099684178	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	5662	False	NA	NA	False	TTTAAA	-7	NA	4382388	4351914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
transcript_79343.known	chr2	-	2419	13	FSM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	0	0	0	0	multi-exon	FALSE	canonical	3	1195	junction_10	117.133352305064	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112492	144092042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296
transcript_79344.known	chr2	-	1539	4	FSM	ENSMUSG00000037279.14	ENSMUST00000037423.4	1539	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	4.64279609239471	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTTTAAAATTTT	NA	False	NA	-12	True	AATAAA	-19	NA	144174066	144147094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_144147840_144159630_144159821_144172823_144173042_144173680
transcript_79349.nic	chr2	+	3227	12	NIC	ENSMUSG00000027425.19	novel	3801	11	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	1	24	junction_11	116.355113324229	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACTCAGCTTGTCTTT	NA	False	NA	40	True	NA	NA	NA	144210876	144249596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_144211078_144215110_144215776_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542_144248632_144249231
transcript_79352.known	chr2	+	3299	11	FSM	ENSMUSG00000027425.19	ENSMUST00000147747.8	3299	11	0	0	0	0	multi-exon	FALSE	canonical	1	81	junction_2	109.46638753517	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACTCAGCTTGTCTTT	NA	False	NA	40	True	NA	NA	NA	144210918	144249596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144211078_144215110_144215290_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
transcript_79358.known	chr2	+	3801	11	FSM	ENSMUSG00000027425.19	ENSMUST00000028911.15	3801	11	0	0	0	0	multi-exon	FALSE	canonical	1	121	junction_10	80.6347319707829	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACTCAGCTTGTCTTT	NA	False	NA	40	True	NA	NA	NA	144210902	144249596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144211078_144215110_144215776_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
transcript_79387.known	chr2	+	693	2	FSM	ENSMUSG00000098387.3	ENSMUST00000183618.3	693	2	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGATCAGGCGTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	144210915	144215641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144211078_144215110
transcript_79389.known	chr2	+	1079	3	FSM	ENSMUSG00000083674.4	ENSMUST00000124788.2	1079	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAAGTGTACGTTTTGGG	NA	False	NA	NA	False	AATAAA	-17	NA	144301199	144309714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144301321_144306398_144306495_144308852
transcript_79390.known	chr2	+	4403	9	FSM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	6.30352084156148	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGTTTCTGGTATTAT	597	False	NA	8	True	GATAAA	-24	NA	144369637	144383915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218_144376332_144377860_144378005_144378202_144378311_144379085_144379278_144380531
transcript_79394.known	chr2	+	792	5	FSM	ENSMUSG00000027427.14	ENSMUST00000155567.8	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	5.7227615711298	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCTATTACACTGTCTC	659	False	NA	NA	False	NA	NA	NA	144369699	144376610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218
transcript_79395.known	chr2	+	2177	2	FSM	ENSMUSG00000027427.14	ENSMUST00000136999.2	2177	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACCAAACC	621	False	NA	NA	False	NA	NA	NA	144369661	144372615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144369846_144370622
transcript_79396.known	chr2	-	2170	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGACTGCTGTGGTGC	NA	False	NA	-9	True	AATAAA	-20	NA	144392789	144384184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
transcript_79401.known	chr2	+	2779	20	FSM	ENSMUSG00000027429.17	ENSMUST00000028916.15	2779	20	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	107.06740569791	903	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398175	144432669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144398263_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
transcript_79416.known	chr2	+	471	2	FSM	ENSMUSG00000074754.5	ENSMUST00000136628.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAGTGTCTTCTTGAAG	NA	False	NA	NA	False	NA	NA	NA	144435973	144437286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144436126_144436967
transcript_79419.known	chr2	+	1350	6	FSM	ENSMUSG00000027430.13	ENSMUST00000028917.7	1350	6	0	0	0	0	multi-exon	TRUE	canonical	3	290	junction_5	10.373041983912	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTTTTCTGTAGAAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	144441816	144610678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_144442012_144445707_144445799_144459111_144459348_144477677_144477785_144588820_144588994_144610130
transcript_79422.nnic	chr2	+	1147	5	NIC	ENSMUSG00000027430.13	novel	1350	6	NA	NA	60	-52	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	128.50753868937	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATAAATCTCAATGAACTA	NA	False	NA	NA	False	AATAAA	-9	NA	144441876	144610626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_144442012_144459111_144459348_144477677_144477785_144588820_144588994_144610130
transcript_79431.known	chr2	+	1142	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
transcript_79433.known	chr2	+	1172	6	FSM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	436.248094551713	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
transcript_79443.known	chr2	+	417	3	FSM	ENSMUSG00000002728.15	ENSMUST00000136330.2	417	3	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_2	9.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTATAAGAGGCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	145745216	145753918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_145745283_145750510_145750536_145753592
transcript_79447.known	chr2	-	3428	14	FSM	ENSMUSG00000001767.6	ENSMUST00000001818.5	3428	14	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	24.6650940380394	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCACAGTGATTGTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	145776934	145759398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_145760521_145761659_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145766634_145766695_145767427_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165_145774258_145774732_145774886_145776473
transcript_79456.nnic	chr2	-	3139	22	NNC	ENSMUSG00000037110.21	novel	3730	16	NA	NA	-50	1290	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	9.102589898328	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATACCTCCATCATTGAGA	NA	False	NA	NA	False	AATAAA	-18	NA	146353996	146245464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_146245609_146246782_146246960_146248261_146248353_146252092_146252191_146253965_146254080_146254653_146254789_146263512_146263678_146266536_146266775_146270524_146270637_146273737_146273887_146276699_146276838_146277758_146277927_146285703_146285932_146289195_146289396_146291129_146291269_146292371_146292488_146293602_146293781_146295328_146295373_146302633_146302692_146321296_146321350_146327040_146327152_146353713
transcript_79459.known	chr2	+	2183	14	FSM	ENSMUSG00000074749.11	ENSMUST00000099278.9	2183	14	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_6	16.1728825562271	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCACTGTAATTAGGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	146697783	146812017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_146697964_146703039_146703103_146705626_146705790_146712685_146712767_146730940_146731587_146732900_146733205_146777722_146777805_146783929_146784096_146784836_146784900_146792442_146792509_146794897_146794985_146798119_146798217_146811463_146811508_146811876
transcript_79471.known	chr2	+	3434	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	0	0	0	0	multi-exon	TRUE	canonical	3	956	junction_9	74.1082057489866	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	10	True	AATAAA	-22	NA	146854915	146919920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
transcript_79505.nic	chr2	+	1628	14	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	-234	43112	-234	-3399	5prime_fragment	FALSE	canonical	3	956	junction_9	69.62707084233	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGATGAAGGTGAGTTTTT	NA	False	NA	NA	False	AAAAAG	-4	NA	146854681	146876808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773
transcript_79507.nic	chr2	+	1593	13	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	-234	48024	-234	-8311	5prime_fragment	FALSE	canonical	3	956	junction_9	64.5890857653211	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATACATTGTAGTAGCT	NA	False	NA	38	True	AAAAAG	-16	NA	146854681	146871896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788
transcript_79521.known	chr2	-	1725	2	FSM	ENSMUSG00000054160.3	ENSMUST00000067020.3	1725	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATACGGATTGTTACCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	146927365	146925235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_146926410_146926814
transcript_79522.known	chr2	-	2120	2	FSM	ENSMUSG00000027434.12	ENSMUST00000067075.7	2120	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACCAAGCCCAGTTCT	NA	False	NA	NA	False	AATAAA	-29	NA	147028324	147025002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_147026478_147027679
transcript_79523.known	chr2	-	2070	2	FSM	ENSMUSG00000037025.12	ENSMUST00000109964.8	2070	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTATCCTTTCTTCTC	NA	False	NA	NA	False	ATTAAA	-19	NA	147887868	147884796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_147886745_147887746
transcript_79524.known	chr2	-	3723	1	FSM	ENSMUSG00000074743.5	ENSMUST00000099270.5	3723	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCATCTCCTTCTTTTC	NA	False	NA	NA	False	AATAAA	-23	NA	148250108	148246385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_148246400_148250100
transcript_79525.known	chr2	+	1116	3	FSM	ENSMUSG00000036992.11	ENSMUST00000109961.8	1116	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	28	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514520	148517947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_148514756_148516383_148516519_148517201
transcript_79527.known	chr2	+	956	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	0	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514545	148517947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_148514756_148517201
transcript_79530.known	chr2	+	4232	6	FSM	ENSMUSG00000027439.10	ENSMUST00000028928.8	4232	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	11.7983049630021	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTGCTTTGTAAAAG	371	False	NA	NA	False	AATAAA	-18	NA	148522942	148534869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_148523136_148525513_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626
transcript_79534.known	chr2	-	4311	10	FSM	ENSMUSG00000027438.15	ENSMUST00000136513.2	4311	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	1.6629588385662	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGACTGTTTTTTTGG	NA	False	NA	0	True	AATAAA	-18	NA	148574333	148535904	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865_148548944_148551236_148551354_148554594_148554675_148574185
transcript_79536.known	chr2	-	860	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_1	68	1429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGAGTTGTTTCTGT	NA	False	NA	-6	True	ATTAAA	-20	NA	148717496	148713641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_148713964_148714736_148714851_148717072
transcript_79537.known	chr2	-	758	2	FSM	ENSMUSG00000027447.7	ENSMUST00000149691.2	758	2	0	0	0	0	multi-exon	FALSE	canonical	3	2207	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGGATGTGACACCATGG	NA	False	NA	NA	False	NA	NA	NA	148717371	148714391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_148714851_148717072
transcript_79538.known	chr2	+	2050	4	FSM	ENSMUSG00000074736.11	ENSMUST00000109935.8	2050	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	14.290634073484	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCATGATTTACTTCATG	NA	False	NA	NA	False	NA	NA	NA	149672707	149846312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_149672846_149741337_149741896_149772824_149772963_149845096
transcript_79539.nic	chr2	+	2132	4	NIC	ENSMUSG00000074736.11	novel	2050	4	NA	NA	15	-55	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	14.7044966667418	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCTTGTTTGCTTACGAC	NA	False	NA	NA	False	NA	NA	NA	149672722	149846257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_149672998_149741337_149741896_149772824_149772963_149845096
transcript_7954.known	chr10	-	776	3	FSM	ENSMUSG00000019763.12	ENSMUST00000155172.8	776	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	63	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCCGCTGAAAGCATC	5755	False	NA	NA	False	AATGAA	-34	NA	4382295	4377242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_4377692_4379076_4379172_4382063
transcript_79540.known	chr2	+	2797	4	FSM	ENSMUSG00000060336.7	ENSMUST00000073782.4	2797	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.35412613473634	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	150059992	150082645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_150060119_150078611_150078739_150078948_150079010_150080162
transcript_79541.known	chr2	+	2159	4	FSM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	5.43650214343336	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACATTTTGGGGAGCATC	NA	False	NA	NA	False	AATAAA	-20	NA	150153350	150168932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_150153479_150165621_150165749_150165947_150166009_150167089
transcript_79542.known	chr2	-	2922	4	FSM	ENSMUSG00000068130.12	ENSMUST00000109916.8	2922	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	3.29983164553722	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	150293406	150249060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_150251710_150252860_150252922_150253130_150253258_150293321
transcript_79543.known	chr2	-	2734	4	FSM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	6.12825877028341	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATAAGAAAAAAAATCCAC	NA	False	NA	NA	False	NA	NA	NA	150327011	150312910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_150315345_150316415_150316477_150316675_150316803_150326899
transcript_79547.known	chr2	-	2235	9	FSM	ENSMUSG00000033096.8	ENSMUST00000046399.7	2235	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	10.0054672554559	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGCTGATTATTACT	999	False	NA	NA	False	AATAAA	-15	NA	150450487	150424999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_150426109_150427682_150427876_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
transcript_79549.nnic	chr2	-	3370	14	NNC	ENSMUSG00000027452.12	novel	3618	14	NA	NA	7976	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_13	46.5577201092917	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGATGTTTTTGGTTGAC	NA	False	NA	-5	True	AATAAA	-27	NA	150502158	150460024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755_150501853_150502032
transcript_79550.known	chr2	-	3618	14	FSM	ENSMUSG00000027452.12	ENSMUST00000028944.4	3618	14	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_13	14.5093318267649	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGATGTTTTTGGTTGAC	NA	False	NA	-5	True	AATAAA	-27	NA	150510178	150460024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755_150501853_150509804
transcript_79553.nic	chr2	-	2866	11	NIC	ENSMUSG00000027452.12	novel	3618	14	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	53.8924855615326	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGATGTTTTTGGTTGAC	5002	False	NA	-5	True	AATAAA	-27	NA	150480087	150460024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150479992
transcript_7956.known	chr10	-	1772	3	FSM	ENSMUSG00000019763.12	ENSMUST00000156940.8	1772	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	8	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACACTGAGTTCAAGTCC	5706	False	NA	NA	False	NA	NA	NA	4382344	4376093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_4377692_4379076_4379172_4382265
transcript_79560.nnic	chr2	+	2588	14	NNC	ENSMUSG00000033068.17	novel	2540	14	NA	NA	13	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_13	44.6562147387449	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTCTTTTGCCTCATT	NA	False	NA	8	True	AATAAA	-13	NA	150590974	150613591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612483
transcript_79561.known	chr2	+	2540	14	FSM	ENSMUSG00000033068.17	ENSMUST00000094467.6	2540	14	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	18.2695141678424	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTGCCTCATTAGTG	NA	False	NA	12	True	AATAAA	-17	NA	150590961	150613595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612548
transcript_79571.known	chr2	+	2893	6	FSM	ENSMUSG00000033068.17	ENSMUST00000147223.8	2893	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	23.1292023208757	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAAAAGAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150591000	150605271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152
transcript_79573.known	chr2	+	3909	20	FSM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_10	16.3671517531211	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTATCTGCATTTCCA	NA	False	NA	23	True	ATTAAA	-23	NA	150628654	150673678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_150629031_150643457_150643560_150648112_150648192_150650716_150650821_150653173_150653306_150655310_150655423_150655840_150655924_150656905_150657050_150657537_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
transcript_79578.known	chr2	-	1969	13	FSM	ENSMUSG00000032046.16	ENSMUST00000141899.8	1969	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	81.835709402029	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTATTGTTTTCTCTA	NA	False	NA	-29	True	AATAAA	-14	NA	150746651	150674436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_150675061_150676198_150676327_150677192_150677272_150679271_150679355_150680230_150680315_150680660_150680699_150681639_150681770_150684165_150684212_150685310_150685342_150688163_150688284_150690271_150690378_150700279_150700405_150746276
transcript_7958.nnic	chr10	+	2418	6	NNC	ENSMUSG00000061759.16	novel	2429	5	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	87.8990329867172	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCACTGGTTTTTATTTG	NA	False	NA	9	True	AATAAA	-18	NA	4382592	4405141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_4382712_4384827_4384934_4389491_4389737_4398308_4398424_4400646_4400810_4403471
transcript_79584.known	chr2	-	1999	13	FSM	ENSMUSG00000032046.16	ENSMUST00000056149.15	1999	13	0	0	0	0	multi-exon	FALSE	canonical	2	181	junction_4	35.7897991363771	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGAATCAGAGTTTCTTC	NA	False	NA	-5	True	AATAAA	-38	NA	150746661	150674412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_150675061_150676198_150676327_150677192_150677272_150679271_150679355_150680234_150680315_150680660_150680699_150681639_150681770_150684165_150684212_150685310_150685342_150688163_150688284_150690271_150690378_150700279_150700405_150746276
transcript_79587.known	chr2	+	1087	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATCTCCTGGTAGCTT	2422	False	NA	23	True	AATAAA	-30	NA	150751513	150773200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
transcript_79589.known	chr2	+	648	5	FSM	ENSMUSG00000027454.11	ENSMUST00000140950.8	648	5	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	29.583568074186	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCGAGAGGAAGACAGTTT	2445	False	NA	NA	False	NA	NA	NA	150751536	150768017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801
transcript_7959.known	chr10	+	2429	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCACTGGTTTTTATTTG	NA	False	NA	9	True	AATAAA	-18	NA	4382466	4405141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
transcript_79593.known	chr2	-	5093	24	FSM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	8.5081968705865	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTTAAAGTTTTAAATT	7563	False	NA	2	True	ATTAAA	-18	NA	150851318	150776438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_150777360_150778866_150778981_150779473_150779642_150781772_150781887_150782591_150782751_150786500_150786571_150787003_150787109_150791258_150792300_150794404_150794713_150795225_150795333_150797491_150797625_150800475_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
transcript_79603.nic	chr2	-	2166	16	ISM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	-32	18233	-32	-261	5prime_fragment	FALSE	canonical	3	41	junction_2	8.77623052467414	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTGAGAAGGATAAAAAGG	7531	False	NA	NA	False	NA	NA	NA	150851350	150794671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_150794713_150795225_150795333_150797491_150797625_150800475_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
transcript_79604.nic	chr2	-	2127	15	ISM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	-32	18785	-32	-813	5prime_fragment	FALSE	canonical	3	41	junction_1	9.03733751653412	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCATTTGGGACCTCAG	7531	False	NA	NA	False	NA	NA	NA	150851350	150795223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_150795333_150797491_150797625_150800475_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
transcript_79607.nic	chr2	-	2361	13	ISM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	-32	23561	-32	479	5prime_fragment	FALSE	canonical	3	46	junction_10	8.16836716989523	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTATTAGTCAGCTCTTG	7531	False	NA	NA	False	ATTAAA	-15	NA	150851350	150799999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
transcript_79609.nic	chr2	-	1514	10	ISM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	-32	28840	-32	11	5prime_fragment	FALSE	canonical	3	46	junction_7	8.79393730551528	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTAGGTTTTAGGCTCA	7531	False	NA	NA	False	AAGAAA	-2	NA	150851350	150805278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
transcript_79610.known	chr2	-	1394	2	FSM	ENSMUSG00000053916.5	ENSMUST00000066640.5	1394	2	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	0	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTAGAGTGATCTTGT	NA	False	NA	-1	True	ATTAAA	-38	NA	150881318	150871604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_150872837_150881156
transcript_79614.known	chr2	+	1486	10	FSM	ENSMUSG00000027455.17	ENSMUST00000089140.13	1486	10	0	0	0	0	multi-exon	FALSE	canonical	1	251	junction_3	435.093348860014	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTCTGTTATATAGAAA	NA	False	NA	24	True	AAGAAA	-6	NA	151336101	151353230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344374_151344381_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
transcript_79618.known	chr2	+	1364	9	FSM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	0	0	0	0	multi-exon	FALSE	canonical	3	1010	junction_3	133.71979799192	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336212	151353225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
transcript_7962.known	chr10	+	828	4	FSM	ENSMUSG00000061759.16	ENSMUST00000152294.2	828	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	86.821656284593	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACTTATACGCTGAACTG	NA	False	NA	NA	False	NA	NA	NA	4382639	4403958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_4382712_4384827_4384934_4400646_4400810_4403471
transcript_79620.nic	chr2	+	3053	9	NIC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	-15	0	intron_retention	FALSE	canonical	3	449	junction_3	313.397411444319	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336194	151353225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_151336333_151338503_151338602_151342634_151344381_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
transcript_79623.known	chr2	+	1369	8	FSM	ENSMUSG00000027455.17	ENSMUST00000103160.5	1369	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	482.170602376294	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTGTGTACACATAATC	NA	False	NA	128	True	NA	NA	NA	151336223	151353334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151347272_151347383_151348166_151348305_151351428_151351594_151352826
transcript_7963.known	chr10	+	680	3	FSM	ENSMUSG00000061759.16	ENSMUST00000117489.8	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_2	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAGCAAATAGAAATAATC	NA	False	NA	NA	False	AATAAA	-23	NA	4382619	4389973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_4382712_4384827_4384934_4389491
transcript_79634.known	chr2	+	894	6	FSM	ENSMUSG00000032966.15	ENSMUST00000143230.8	894	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1104.6957228124	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGATTTGCAAGAATTTTTA	NA	False	NA	123	True	AATAGA	-16	NA	151384540	151402862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151384665_151384737_151384786_151385932_151386061_151399305_151399419_151401377_151401537_151402540
transcript_79635.known	chr2	+	603	5	FSM	ENSMUSG00000032966.15	ENSMUST00000137597.8	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1137.77447238018	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAGTACTTAATGGTGA	NA	False	NA	NA	False	NA	NA	NA	151384513	151401540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151384665_151384737_151384786_151385932_151386061_151399305_151399419_151401377
transcript_79637.known	chr2	+	1658	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTCATGGAGGTTGC	NA	False	NA	25	True	AATAAA	-26	NA	151384402	151403612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
transcript_79641.known	chr2	+	662	4	FSM	ENSMUSG00000032966.15	ENSMUST00000148295.8	662	4	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	221.63232816737	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTTTTACATGTAGCT	NA	False	NA	NA	False	NA	NA	NA	151384534	151401748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377
transcript_79645.known	chr2	+	1588	4	FSM	ENSMUSG00000032966.15	ENSMUST00000142271.2	1588	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	1089.25550517569	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTGTGTCATGGAGGTT	NA	False	NA	23	True	AATAAA	-24	NA	151385818	151403610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151386061_151399305_151399419_151401377_151401541_151402540
transcript_79646.known	chr2	+	2011	2	FSM	ENSMUSG00000032966.15	ENSMUST00000126670.8	2011	2	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAATAAAAAATAAA	NA	False	NA	NA	False	TATAAA	-19	NA	151384513	151386597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151384665_151384737
transcript_79649.known	chr2	+	1399	9	FSM	ENSMUSG00000027456.9	ENSMUST00000028950.9	1399	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	9.20258115965298	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151414541	151431925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151414625_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_7965.nic	chr10	+	1020	5	ISM	ENSMUSG00000019767.13	ENSMUST00000138112.8	3350	11	-11	41126	-11	6793	5prime_fragment	FALSE	canonical	2	4	junction_1	3.41869858279434	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTGTTTGTTTGTTTG	3196	False	NA	NA	False	ATTAAA	-17	NA	4432490	4471105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_4432629_4462751_4462881_4464055_4464313_4468905_4469051_4470754
transcript_79650.nnic	chr2	+	1508	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3309	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	8.04285397107271	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151417850	151431925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_151418043_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_79651.nnic	chr2	+	1453	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3561	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.0987313559674	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151418102	151431925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_151418240_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_79652.known	chr2	-	4607	6	FSM	ENSMUSG00000027457.16	ENSMUST00000094456.10	4607	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.16619037896906	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTGTCTTTGTACTGT	1683	False	NA	1	True	ATTAAA	-26	NA	151474469	151432468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_151436520_151439028_151439179_151442176_151442285_151442897_151442995_151474067_151474175_151474375
transcript_79653.known	chr2	-	3367	5	FSM	ENSMUSG00000027457.16	ENSMUST00000109877.10	3367	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	0.82915619758885	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGACAACATAAAATCCAT	1639	False	NA	NA	False	AATAAA	-14	NA	151474513	151433644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_151436520_151439028_151439179_151442897_151442995_151474067_151474175_151474375
transcript_79654.known	chr2	+	1435	2	FSM	ENSMUSG00000044364.6	ENSMUST00000060196.3	1435	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGGCTACTTGGCATTT	43	False	NA	NA	False	NA	NA	NA	151543927	151549230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151544366_151548233
transcript_79656.known	chr2	-	3809	7	FSM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_3	11.5385826204473	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTCTTTTGGTGCTAA	NA	False	NA	NA	False	AATAGA	-20	NA	151583230	151557731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930
transcript_79661.known	chr2	-	3306	5	FSM	ENSMUSG00000032869.16	ENSMUST00000155939.8	3306	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	143.726084967204	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACCATGCAGAGCAGAGT	NA	False	NA	NA	False	NA	NA	NA	151583213	151557981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151582930
transcript_79662.known	chr2	+	2371	5	FSM	ENSMUSG00000032852.4	ENSMUST00000042217.4	2371	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.707106781186548	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAACTTTGAGGACT	NA	False	NA	NA	False	AAGAAA	-4	NA	151684846	151716588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151685073_151709675_151709865_151710490_151710632_151711688_151711875_151714959
transcript_79663.known	chr2	-	1754	2	FSM	ENSMUSG00000027459.17	ENSMUST00000062047.6	1754	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGACTCTTCTCTGC	NA	False	NA	-1	True	AATAAA	-22	NA	151822139	151811317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_151812845_151821912
transcript_79666.known	chr2	+	2669	5	FSM	ENSMUSG00000027463.15	ENSMUST00000073228.12	2669	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.8294180358703	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGACTTGTGTGCTCAC	NA	False	NA	18	True	NA	NA	NA	151838454	151851178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151838572_151845971_151846599_151847451_151847940_151849400_151849525_151849865
transcript_79667.known	chr2	+	2590	5	FSM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	23.0976189249022	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCAAACTACTTAAAC	NA	False	NA	-18	True	NA	NA	NA	151841784	151851142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
transcript_7967.known	chr10	-	3894	25	FSM	ENSMUSG00000096054.4	ENSMUST00000215467.2	3894	25	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.74535599249993	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAGGAGGTAGAGA	NA	False	NA	NA	False	ATTAAA	-3	NA	5144707	5067099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_5067123_5072980_5073137_5073654_5073832_5074813_5074964_5076659_5076843_5077193_5077327_5078379_5078577_5080009_5080142_5081907_5082082_5090811_5091013_5093149_5093270_5096252_5096355_5103098_5103309_5103862_5104019_5104463_5104596_5107620_5107760_5111451_5111562_5112333_5112466_5118686_5118879_5122887_5123062_5125721_5125917_5135395_5135558_5135752_5135921_5143031_5143173_5144472
transcript_79670.known	chr2	+	446	2	FSM	ENSMUSG00000032802.9	ENSMUST00000137751.2	446	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTCTCCACATCAGCA	NA	False	NA	NA	False	NA	NA	NA	151947435	151951131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151947659_151950908
transcript_79672.known	chr2	+	2812	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	0	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAACAGTTTTGGTTGTG	NA	False	NA	31	True	NA	NA	NA	151947443	151953296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151947868_151950908
transcript_79673.known	chr2	+	980	2	FSM	ENSMUSG00000068079.6	ENSMUST00000089112.6	980	2	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTGTATCCTGGCTAAG	7089	False	NA	NA	False	AATAAA	-17	NA	151985480	151991017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_151986059_151990615
transcript_79674.known	chr2	-	392	1	FSM	ENSMUSG00000081087.2	ENSMUST00000117430.2	392	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	NA	False	NA	NA	False	AAAACA	-35	NA	152027602	152027210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_152027200_152027600
transcript_79679.nnic	chr2	+	4320	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	52.761493041128	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCATGCAGCCTGAGCAA	NA	False	NA	19	True	AATAAA	-20	NA	152068757	152123772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_152068912_152090618_152090732_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
transcript_79681.known	chr2	+	4206	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCATGCAGCCTGAGCAA	NA	False	NA	19	True	AATAAA	-20	NA	152068758	152123772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
transcript_79685.nic	chr2	+	4244	13	NIC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	43.5398923083443	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCATGCAGCCTGAGCAA	NA	False	NA	19	True	AATAAA	-20	NA	152068761	152123772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_152068953_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
transcript_79692.known	chr2	+	1559	9	FSM	ENSMUSG00000074698.11	ENSMUST00000136063.2	1559	9	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_1	38.0195262332397	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCATCTGTAGACCAGGC	NA	False	NA	NA	False	NA	NA	NA	152068795	152115260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547
transcript_79698.nic	chr2	+	766	3	ISM	ENSMUSG00000074698.11	ENSMUST00000124791.8	600	6	-348	6508	-291	1479	5prime_fragment	FALSE	canonical	2	55	junction_1	19	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGAGTATAAGAAAAACAAT	NA	False	NA	NA	False	AAAAAG	-21	NA	152068467	152096241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_152068912_152092321_152092532_152096129
transcript_79701.known	chr2	+	2520	2	FSM	ENSMUSG00000074698.11	ENSMUST00000141597.2	2520	2	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAATAA	NA	False	NA	NA	False	NA	NA	NA	152068832	152094762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152068912_152092321
transcript_79702.known	chr2	+	466	4	FSM	ENSMUSG00000074698.11	ENSMUST00000133119.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	52.8793175279544	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGCGTGAAATAAAGATT	NA	False	NA	NA	False	AGTAAA	-12	NA	152068827	152099316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152068953_152092321_152092532_152096129_152096242_152099297
transcript_79706.known	chr2	+	3386	8	FSM	ENSMUSG00000027465.14	ENSMUST00000028963.14	3386	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	23.7366503835013	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTTTGTATCATCGC	NA	False	NA	28	True	AATAAA	-23	NA	152135747	152155916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152135961_152144071_152144258_152146865_152146947_152149908_152150096_152150249_152150352_152152305_152152448_152153236_152153425_152153629
transcript_79708.nnic	chr2	+	3315	8	NNC	ENSMUSG00000027465.14	novel	3386	8	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_6	59.9952379062586	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTTTGTATCATCGC	NA	False	NA	28	True	AATAAA	-23	NA	152135743	152155916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_152135961_152144071_152144258_152146865_152146947_152149908_152150096_152150249_152150352_152152305_152152448_152153311_152153425_152153629
transcript_79713.known	chr2	+	3496	7	FSM	ENSMUSG00000027465.14	ENSMUST00000140482.2	3496	7	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	23.7323033484368	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTTTGTATCATCGC	NA	False	NA	28	True	AATAAA	-23	NA	152135791	152155916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152135961_152144071_152144258_152146865_152146947_152149908_152150352_152152305_152152448_152153236_152153425_152153629
transcript_79727.known	chr2	-	2252	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174573	152158253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
transcript_7973.known	chr10	-	1940	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGTGCAGGTTTTT	NA	False	NA	-9	True	AATAAA	-45	NA	5755600	5749159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
transcript_79737.known	chr2	-	2384	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	1562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174332	152158253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
transcript_79750.nnic	chr2	-	2241	11	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	58	junction_5	166.375148384607	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174350	152158253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
transcript_79766.known	chr2	-	2026	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	0	0	0	0	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	1951	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	-4	True	AATAAA	-29	NA	152185952	152179341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
transcript_79773.known	chr2	-	3073	1	FSM	ENSMUSG00000074682.5	ENSMUST00000099207.5	3073	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	410	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTGTATTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-16	NA	152256947	152253874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_152253900_152256900
transcript_79778.known	chr2	+	1743	13	FSM	ENSMUSG00000019188.17	ENSMUST00000089059.9	1743	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	48.170054667466	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAGCTCTCAGCAGCTC	NA	False	NA	21	True	ATTAAA	-35	NA	152511407	152546956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152545914_152546115_152546541
transcript_79780.known	chr2	+	5204	12	FSM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_7	14.82905345753	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTCTCTTCTTATTCGT	NA	False	NA	NA	False	AAGAAA	-12	NA	152511380	152550590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
transcript_79788.known	chr2	+	2769	3	FSM	ENSMUSG00000019188.17	ENSMUST00000148156.2	2769	3	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	4.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGGAGGTGTGTTTTCT	NA	False	NA	NA	False	ATTAAA	-12	NA	152511405	152525361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152511685_152519461_152519561_152522970
transcript_79791.nnic	chr2	+	698	2	Genic_Genomic	ENSMUSG00000042814.9	novel	912	1	NA	NA	107	5	multi-exon	TRUE	canonical	3	34	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGGGTGTTGTAACCACAA	NA	False	NA	106	True	AATAAA	-28	NA	152529061	152529871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr2_+_152529294_152529405
transcript_79792.known	chr2	+	912	1	FSM	ENSMUSG00000042814.9	ENSMUST00000062148.9	912	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATCGGGGTGTTGTAAC	NA	False	NA	101	True	AATAAA	-23	NA	152528954	152529866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152529000_152529900
transcript_79793.known	chr2	+	934	2	FSM	ENSMUSG00000042745.10	ENSMUST00000038368.9	934	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	4422	False	NA	13	True	ATTAAA	-17	NA	152578170	152579330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152578666_152578891
transcript_79794.known	chr2	+	1160	1	FSM	ENSMUSG00000042745.10	ENSMUST00000109824.2	1160	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	4422	False	NA	13	True	ATTAAA	-17	NA	152578170	152579330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152578200_152579300
transcript_79796.known	chr2	+	727	5	FSM	ENSMUSG00000009876.14	ENSMUST00000010020.12	727	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	3.69966214673719	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTGGACTATCTGTTAT	NA	False	NA	NA	False	AATAAA	-31	NA	152596092	152606957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152596145_152597074_152597160_152598929_152599095_152602557_152602690_152606664
transcript_79798.nic	chr2	-	2438	3	NIC	ENSMUSG00000007659.19	novel	2417	3	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	154.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152672607	152622587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_152624203_152671346_152672023_152672460
transcript_79799.nnic	chr2	-	2516	3	NNC	ENSMUSG00000007659.19	novel	2417	3	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	160.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152673632	152622587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_152624203_152671346_152672023_152673407
transcript_79800.known	chr2	-	2417	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	89.5	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152673648	152622587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_152624203_152671346_152672023_152673522
transcript_79801.known	chr2	-	2568	3	FSM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	91.5	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCACAGCCTTGGCTCT	NA	False	NA	-9	True	AATAAA	-18	NA	152672586	152622591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_152624203_152671346_152672023_152672305
transcript_79803.known	chr2	+	3483	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_2	86.1429969118501	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCTCTTGTTGTCCTAG	2708	False	NA	NA	False	NA	NA	NA	152689897	152736574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
transcript_79804.nnic	chr2	+	2825	18	NNC	ENSMUSG00000027469.17	novel	3483	18	NA	NA	-1	-638	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_16	195.159929093745	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGGTTTCAGTCAC	2707	False	NA	15	True	AATAAA	-14	NA	152689896	152735936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734053_152734221_152735503
transcript_79809.known	chr2	+	3654	18	FSM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	172.681016802699	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCTCTTGTTGTCCTAG	2725	False	NA	NA	False	NA	NA	NA	152689914	152736574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
transcript_7982.nic	chr10	-	1523	4	ISM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	-321	1171	-321	-1171	5prime_fragment	FALSE	canonical	3	770	junction_3	13.5236418500672	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTCAAATCAAGTCCTC	NA	False	NA	NA	False	NA	NA	NA	5755921	5750330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_5750436_5751151_5751243_5751868_5752533_5755258
transcript_79824.nic	chr2	+	1948	14	ISM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	-1	5350	-1	4867	5prime_fragment	FALSE	canonical	3	597	junction_2	74.7225241898437	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGCAGAAAGGGGAGGT	2707	False	NA	NA	False	AATAAA	-2	NA	152689896	152731224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065
transcript_79844.known	chr2	-	1273	5	FSM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_2	13.6656503687164	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	8639	False	NA	NA	False	AATAAA	-21	NA	152857347	152850809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857153
transcript_79852.known	chr2	-	1299	5	FSM	ENSMUSG00000027472.15	ENSMUST00000150545.8	1299	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	103.576964137785	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	8639	False	NA	NA	False	AATAAA	-21	NA	152857347	152850809	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857127
transcript_79856.nnic	chr2	+	2186	13	NNC	ENSMUSG00000003283.16	novel	2090	13	NA	NA	-829	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	20.5877188310572	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTCAGCTTCTCTGTCT	NA	False	NA	17	True	AATAAA	-27	NA	152949558	152993359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_152949942_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
transcript_79858.known	chr2	+	2090	13	FSM	ENSMUSG00000003283.16	ENSMUST00000189688.2	2090	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	8.17346655682615	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTCAGCTTCTCTGTCT	NA	False	NA	17	True	AATAAA	-27	NA	152950387	152993359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_152950675_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
transcript_79870.known	chr2	+	3896	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	53.5920770883495	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGGGTGCGGATTGAAG	NA	False	NA	41	True	AATAAA	-30	NA	153003222	153052386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
transcript_79881.known	chr2	+	2274	17	FSM	ENSMUSG00000068040.11	ENSMUST00000137446.8	2274	17	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	54.9846214295415	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTCAGCATTGTAATCT	NA	False	NA	NA	False	CATAAA	-15	NA	153003222	153046782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454
transcript_79894.known	chr2	-	3072	1	FSM	ENSMUSG00000074671.7	ENSMUST00000099194.4	3072	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGGTCATATTATTTCCT	NA	False	NA	NA	False	AATAAA	-27	NA	153067361	153064289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_153064300_153067400
transcript_79897.known	chr2	+	5600	7	FSM	ENSMUSG00000046020.14	ENSMUST00000049863.12	5600	7	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	7.06320670013903	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGCATGCCTTCATA	NA	False	NA	NA	False	NA	NA	NA	153083452	153112167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153083646_153085557_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153107614
transcript_79899.known	chr2	+	5635	9	FSM	ENSMUSG00000027475.10	ENSMUST00000028977.7	5635	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	5.17052946998661	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTCCTTGTCAGTGAT	7813	False	NA	10	True	AATAAA	-29	NA	153133332	153175310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153133425_153158136_153159605_153162194_153162297_153162498_153162622_153162703_153162823_153164731_153164846_153165456_153165563_153171491_153171671_153171978
transcript_7990.known	chr10	-	2588	7	FSM	ENSMUSG00000019774.9	ENSMUST00000019908.9	2588	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	9.49853789918334	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATTAACCATTATGGT	NA	False	NA	NA	False	AATAAA	-15	NA	5773910	5761886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768800_5768985_5770024_5770105_5773525
transcript_79916.known	chr2	-	5610	8	FSM	ENSMUSG00000061411.13	ENSMUST00000109784.2	5610	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	27.1496232168391	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTACACTGAGCTTCGACT	NA	False	NA	NA	False	AATAAA	-15	NA	153286399	153249385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262451_153262730_153278125_153278268_153286276
transcript_79921.nic	chr2	-	1973	8	NIC	ENSMUSG00000061411.13	novel	5610	8	NA	NA	-77	-3696	combination_of_known_junctions	FALSE	canonical	3	28	junction_7	31.3205937337838	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATTGCCAGTCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	153286476	153253081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262469_153262730_153278125_153278268_153286276
transcript_79924.nnic	chr2	-	3158	10	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	-51	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	59.527771296728	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTATGGGTTTGTTTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	153474752	153458851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_153460234_153460337_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
transcript_79927.known	chr2	-	1343	10	FSM	ENSMUSG00000056941.18	ENSMUST00000109782.2	1343	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	72.7254264636584	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474660	153460753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474107_153474183_153474513
transcript_79928.known	chr2	-	3210	9	FSM	ENSMUSG00000056941.18	ENSMUST00000071852.10	3210	9	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_3	11.9373363863133	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTATGGGTTTGTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	153474701	153458852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
transcript_7993.nnic	chr10	-	1322	7	NNC	ENSMUSG00000019774.9	novel	2588	7	NA	NA	-33	153	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_4	8.85061203156784	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGACAGTTGTTTTATGC	NA	False	NA	-2	True	TATAAA	-19	NA	5773943	5763058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768927_5768985_5770024_5770105_5773525
transcript_79937.known	chr2	+	4318	24	FSM	ENSMUSG00000027478.16	ENSMUST00000056495.14	4318	24	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	26.7017412684545	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	22	True	ATTAAA	-14	NA	153491373	153529646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
transcript_79938.known	chr2	+	4320	24	FSM	ENSMUSG00000027478.16	ENSMUST00000109774.9	4320	24	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	28.4266708280574	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	26	True	ATTAAA	-18	NA	153491372	153529650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
transcript_79943.known	chr2	+	3630	23	FSM	ENSMUSG00000027478.16	ENSMUST00000109771.2	3630	23	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	22.8903242036621	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTGAGCAGTGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	153491536	153529236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
transcript_79944.known	chr2	+	4208	23	FSM	ENSMUSG00000027478.16	ENSMUST00000072997.10	4208	23	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_15	25.158013034314	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	26	True	ATTAAA	-18	NA	153491369	153529650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
transcript_79949.known	chr2	+	4260	23	FSM	ENSMUSG00000027478.16	ENSMUST00000081628.13	4260	23	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	32.90435048731	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	26	True	ATTAAA	-18	NA	153491372	153529650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
transcript_79956.known	chr2	+	4148	22	FSM	ENSMUSG00000027478.16	ENSMUST00000109773.8	4148	22	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	30.6586058616286	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	26	True	ATTAAA	-18	NA	153491369	153529650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
transcript_79958.nic	chr2	+	3239	22	NIC	ENSMUSG00000027478.16	novel	4318	24	NA	NA	-57	-541	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	25.7619487720775	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAACAGCTCTCTTAGTA	NA	False	NA	NA	False	NA	NA	NA	153491312	153528695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
transcript_79959.known	chr2	+	4130	22	FSM	ENSMUSG00000027478.16	ENSMUST00000088976.12	4130	22	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	27.8880983888474	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	26	True	ATTAAA	-18	NA	153491373	153529650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
transcript_79964.nic	chr2	+	3067	21	NIC	ENSMUSG00000027478.16	novel	4208	23	NA	NA	0	-541	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	20.6421898063166	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAACAGCTCTCTTAGTA	NA	False	NA	NA	False	NA	NA	NA	153491369	153528695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
transcript_79966.known	chr2	+	4015	21	FSM	ENSMUSG00000027478.16	ENSMUST00000109772.8	4015	21	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_15	23.6207535866238	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	26	True	ATTAAA	-18	NA	153491373	153529650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
transcript_79971.known	chr2	+	4070	21	FSM	ENSMUSG00000027478.16	ENSMUST00000103150.10	4070	21	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	33.2554882688557	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	26	True	ATTAAA	-18	NA	153491373	153529650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
transcript_79977.known	chr2	+	3956	20	FSM	ENSMUSG00000027478.16	ENSMUST00000103151.8	3956	20	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	30.4258783278669	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	26	True	ATTAAA	-18	NA	153491372	153529650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153491661_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
transcript_7998.known	chr10	-	8107	5	FSM	ENSMUSG00000019775.18	ENSMUST00000131996.8	8107	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGTGTCTTAAAAGTG	NA	False	NA	NA	False	AATAAA	-15	NA	5872386	5775662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_5783142_5791271_5791507_5792535_5792626_5812518_5812663_5872227
transcript_79994.known	chr2	+	7336	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	0	0	0	0	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATGGCTGTGTTTGG	NA	False	NA	NA	False	AATAAA	-20	NA	153583193	153615230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
transcript_8.known	ERCC-00022	+	735	1	FSM	ERCC-00022A	DQ855004	735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	167	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00022_+_0_700
transcript_80003.known	chr2	+	435	1	FSM	ENSMUSG00000083097.4	ENSMUST00000118786.2	435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGCCAGATACCAACAAGA	NA	False	NA	NA	False	NA	NA	NA	153668090	153668525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_153668100_153668500
transcript_80004.nic	chr2	+	899	6	ISM	ENSMUSG00000074665.12	ENSMUST00000099181.2	1479	13	10134	0	10134	0	3prime_fragment	FALSE	canonical	2	5	junction_4	2.13541565040626	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGGGTGTCTCCATGAA	NA	False	NA	NA	False	NA	NA	NA	153795976	153805772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_153796354_153799049_153799118_153799638_153799682_153801569_153801634_153803435_153803513_153805502
transcript_80005.known	chr2	+	1637	15	FSM	ENSMUSG00000038572.8	ENSMUST00000045959.8	1637	15	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	7.50951777032701	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGTCTGAGTTTGCTG	NA	False	NA	5	True	AATAAA	-15	NA	154065661	154082822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154065814_154066857_154067075_154069010_154069116_154069982_154070115_154070773_154070859_154070950_154071015_154071386_154071473_154072092_154072276_154074753_154074808_154075108_154075259_154076410_154076479_154076607_154076654_154078677_154078742_154080747_154080828_154082671
transcript_80008.known	chr2	-	2160	15	FSM	ENSMUSG00000027487.12	ENSMUST00000109731.8	2160	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_14	23.0212856251934	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTACTTTTTTCA	5389	False	NA	-9	True	AATAAA	-18	NA	154214930	154177299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600_154214775_154214881
transcript_8001.known	chr10	+	114	1	FSM	ENSMUSG00000081926.2	ENSMUST00000121411.2	114	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	2119	False	NA	NA	False	NA	NA	NA	6988660	6988774	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_6988700_6988800
transcript_80010.nic	chr2	-	2046	14	NIC	ENSMUSG00000027487.12	novel	1970	14	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_13	25.3818180276853	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTCCTTGTCTACTT	5703	False	NA	-15	True	AATAAA	-12	NA	154214616	154177305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214501
transcript_80011.known	chr2	-	1970	14	FSM	ENSMUSG00000027487.12	ENSMUST00000028990.10	1970	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	9.02265393460642	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTCCTTGTCTACTT	5680	False	NA	-15	True	AATAAA	-12	NA	154214639	154177305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600
transcript_80018.known	chr2	-	2131	8	FSM	ENSMUSG00000027488.13	ENSMUST00000109728.8	2131	8	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_7	15.9808558939138	523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTGTGGTTTGTGTC	NA	False	NA	1	True	AATAAA	-30	NA	154250019	154218232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154218829_154218926_154219115_154219927_154220125_154222593_154222725_154222830_154223039_154225699_154225905_154245641_154245828_154249599
transcript_80029.known	chr2	+	6069	11	FSM	ENSMUSG00000038533.16	ENSMUST00000045270.15	6069	11	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_9	50.3348785634772	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACCAGACCTGGGGAA	5317	False	NA	37	True	AATAAA	-27	NA	154278414	154381276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141_154373333_154376803
transcript_80032.nic	chr2	+	1931	10	ISM	ENSMUSG00000038533.16	ENSMUST00000045270.15	6069	11	-150	7759	-136	-2	5prime_fragment	TRUE	canonical	3	422	junction_9	51.6952131413383	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATAACAGTCTACCACACA	5167	False	NA	10	True	AATAAA	-15	NA	154278264	154373517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141
transcript_80036.nic	chr2	+	2404	10	NIC	ENSMUSG00000038533.16	novel	6069	11	NA	NA	-79	778	combination_of_known_junctions	FALSE	canonical	3	63	junction_1	140.841474671541	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTCTAGTAATGATAAAAAA	5224	False	NA	NA	False	AGTAAA	-2	NA	154278321	154377662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_154278557_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141_154373333_154376803
transcript_8004.known	chr10	-	3447	13	FSM	ENSMUSG00000015202.14	ENSMUST00000015346.12	3447	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	5.32812245438193	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGGGATTTTATGAATT	NA	False	NA	-4	True	AATAAA	-11	NA	7162237	7069062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_7070587_7076094_7076185_7076634_7076844_7079022_7079148_7084521_7084669_7085047_7085117_7088354_7088415_7090318_7090439_7092960_7093003_7102863_7102952_7104282_7104486_7110643_7110808_7161631
transcript_80046.known	chr2	+	732	5	FSM	ENSMUSG00000038533.16	ENSMUST00000109724.2	732	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	202.57390626633	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGGGGCCAGTTCCAT	5357	False	NA	NA	False	NA	NA	NA	154278454	154359744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154278557_154346472_154346715_154352427_154352518_154357736_154357919_154359628
transcript_80051.known	chr2	-	730	5	FSM	ENSMUSG00000027489.16	ENSMUST00000135530.8	730	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	6.09815545882523	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAGGGTCCAATAGGTA	7325	False	NA	NA	False	GGGGCT	-4	NA	154400772	154396209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
transcript_80052.known	chr2	-	2732	7	FSM	ENSMUSG00000027490.18	ENSMUST00000103145.11	2732	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	374.662255312108	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGTGTTTGTGTCGAAT	9502	False	NA	-3	True	AGTAAA	-14	NA	154411812	154401326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154411408
transcript_80054.known	chr2	-	2755	7	FSM	ENSMUSG00000027490.18	ENSMUST00000000894.6	2755	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	459.079392794851	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCTGGGTTTGAAACTCT	9674	False	NA	-21	True	AATAAA	-16	NA	154411640	154401553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154410986
transcript_8006.known	chr10	-	3815	6	FSM	ENSMUSG00000079685.11	ENSMUST00000177585.9	3815	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	15.4324333790883	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAAGAAAGAGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	7423638	7393037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_7395698_7396417_7396553_7397380_7397485_7406339_7406616_7406953_7407209_7423253
transcript_80064.nic	chr2	-	1310	4	ISM	ENSMUSG00000027490.18	ENSMUST00000103145.11	2732	7	-47	3136	-47	-2909	5prime_fragment	FALSE	canonical	3	965	junction_3	42.6953028902348	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGGGCATGGTGGCGCAC	9455	False	NA	NA	False	NA	NA	NA	154411859	154404462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_154405011_154405814_154406035_154406337_154406429_154411408
transcript_80067.nic	chr2	-	1528	3	NIC	ENSMUSG00000027490.18	novel	2732	7	NA	NA	38	-2909	intron_retention	FALSE	canonical	3	965	junction_2	51	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGGGCATGGTGGCGCAC	9540	False	NA	NA	False	NA	NA	NA	154411774	154404462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_154405011_154405814_154406429_154411408
transcript_80072.known	chr2	-	2789	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTGCTTTGCAGTCGTTG	NA	False	NA	NA	False	NA	NA	NA	154445628	154427677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
transcript_80075.known	chr2	-	560	3	FSM	ENSMUSG00000000876.12	ENSMUST00000109703.3	560	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	94.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAAGTTTTCTGTTTTG	NA	False	NA	NA	False	AATAAA	-30	NA	154445608	154437165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154437491_154438121_154438185_154445436
transcript_80076.known	chr2	+	3299	15	FSM	ENSMUSG00000059842.13	ENSMUST00000081926.13	3299	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	3.22062866217014	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGAGTCTCAGAGATTC	5722	False	NA	25	True	AATAAA	-35	NA	154455216	154488741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154455323_154463672_154463784_154466774_154466972_154468697_154468848_154469807_154470054_154470719_154470916_154472328_154472420_154474198_154474390_154476006_154476198_154479933_154480143_154483235_154483333_154483901_154484035_154485408_154485521_154485706_154485778_154487543
transcript_80077.known	chr2	+	1616	5	FSM	ENSMUSG00000038467.16	ENSMUST00000044277.10	1616	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	13.5738719604982	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTGTGTGTTCAGTCAAT	NA	False	NA	30	True	ATTAAA	-22	NA	154498937	154536705	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154499292_154531437_154531616_154533129_154533245_154534468_154534596_154535863
transcript_80080.nic	chr2	+	790	4	ISM	ENSMUSG00000038467.16	ENSMUST00000044277.10	1616	5	-16	2110	-16	-1606	5prime_fragment	FALSE	canonical	3	34	junction_1	14.613540144522	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTATGCCCACAGTTGG	NA	False	NA	9	True	NA	NA	NA	154498921	154534595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_154499292_154531437_154531616_154533129_154533245_154534468
transcript_80088.known	chr2	+	1759	9	FSM	ENSMUSG00000027593.16	ENSMUST00000116389.9	1759	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	53.4051437129421	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGCTTGTTTATTTTG	NA	False	NA	23	True	AATAAA	-33	NA	154633029	154709181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_80095.known	chr2	+	1709	8	FSM	ENSMUSG00000027593.16	ENSMUST00000109701.10	1709	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	30.0557305480255	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633015	154709165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_80100.known	chr2	+	1802	10	FSM	ENSMUSG00000027593.16	ENSMUST00000029120.14	1802	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	48.6369772452561	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	6	True	AATAAA	-16	NA	154633052	154709164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_80101.known	chr2	+	1747	9	FSM	ENSMUSG00000027593.16	ENSMUST00000058089.13	1747	9	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	14.5945195193264	1230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGCTTGTTTATTTTG	NA	False	NA	23	True	AATAAA	-33	NA	154633076	154709181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_80104.known	chr2	-	2312	10	FSM	ENSMUSG00000074656.13	ENSMUST00000166171.8	2312	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	4169.46393510879	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGTGCTCCATTGCTTT	3785	False	NA	-16	True	AATAAA	-24	NA	154734702	154713337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154714091_154714159_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
transcript_80109.known	chr2	-	2542	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	0	0	0	0	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATTGCTTTTGTGTGTT	3632	False	NA	-8	True	AATAAA	-32	NA	154734855	154713329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
transcript_80127.nic	chr2	-	579	4	ISM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	21	12965	21	0	5prime_fragment	FALSE	canonical	3	11792	junction_2	580.448868453449	1019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAAGAAGAA	3653	False	NA	-51	True	NA	NA	NA	154734834	154726294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_154726367_154729623_154729728_154730102_154730281_154734609
transcript_80129.known	chr2	-	3785	3	FSM	ENSMUSG00000074656.13	ENSMUST00000147136.2	3785	3	0	0	0	0	multi-exon	FALSE	canonical	3	11792	junction_1	580	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGAAGATGAAATACTAG	3736	False	NA	-19	True	AAAAAG	-24	NA	154734751	154726262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154729728_154730102_154730281_154734609
transcript_80130.known	chr2	-	4102	2	FSM	ENSMUSG00000074656.13	ENSMUST00000135524.2	4102	2	0	0	0	0	multi-exon	FALSE	canonical	3	12952	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAAAAAGAAAAAGAA	3759	False	NA	-54	True	NA	NA	NA	154734728	154726297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154730281_154734609
transcript_80133.known	chr2	-	1041	4	FSM	ENSMUSG00000074656.13	ENSMUST00000161172.3	1041	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_3	5764.94448272391	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAAGAAGAA	3772	False	NA	-51	True	NA	NA	NA	154734715	154726294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154726367_154729623_154729728_154730102_154730281_154734028
transcript_80136.nnic	chr2	-	2397	11	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	16	-419	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	513.476971246034	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTTGGCTCTATTAAAA	NA	False	NA	-59	True	GATAAA	-22	NA	154916401	154901648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154915337_154915627_154916284
transcript_80137.known	chr2	-	2543	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTCTAAGTACCCTCTG	NA	False	NA	-8	True	AATAAA	-30	NA	154916417	154901229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
transcript_80145.known	chr2	+	5309	26	FSM	ENSMUSG00000027598.17	ENSMUST00000109685.8	5309	26	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	35.1837689851443	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATTTGCCTTTTCGTCTG	NA	False	NA	55	True	AATAAA	-15	NA	154975478	155068773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154975506_154980115_154980193_154999693_154999896_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
transcript_80146.known	chr2	+	5159	25	FSM	ENSMUSG00000027598.17	ENSMUST00000029126.15	5159	25	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	21.5151351765836	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCCTTTTCGTCTGCT	NA	False	NA	57	True	AATAAA	-17	NA	154975428	155068775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
transcript_8015.nnic	chr10	+	3373	8	NNC	ENSMUSG00000019796.13	novel	3386	7	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	120.844308673497	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTCTTATAAATTATAG	7277	False	NA	23	True	AATAAA	-30	NA	7465592	7501247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_7466378_7471867_7472029_7474470_7474613_7478592_7478719_7479937_7480148_7484307_7484380_7484487_7484511_7499393
transcript_80151.known	chr2	+	2480	21	FSM	ENSMUSG00000027598.17	ENSMUST00000123497.2	2480	21	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	22.5682852693775	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACGAAAAAAGAGCATTA	NA	False	NA	NA	False	NA	NA	NA	154975480	155054514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256
transcript_80153.known	chr2	+	684	4	FSM	ENSMUSG00000047459.15	ENSMUST00000109682.9	684	4	0	0	0	0	multi-exon	FALSE	canonical	3	1428	junction_1	142.385236438177	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGTCTTTACTAGA	NA	False	NA	19	True	AGTAAA	-21	NA	155078454	155092197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155078538_155084650_155084727_155089690_155089859_155091840
transcript_80155.known	chr2	+	534	4	FSM	ENSMUSG00000047459.15	ENSMUST00000135831.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	796.677405785359	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGTCGCTCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	155078730	155092000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155078861_155084650_155084727_155089690_155089859_155091840
transcript_80158.known	chr2	+	1112	4	FSM	ENSMUSG00000027602.10	ENSMUST00000029128.4	1112	4	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_1	22.4251842554055	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCCTCCAGCTGCTTGT	NA	False	NA	11	True	AATAAA	-23	NA	155118216	155119993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155118567_155118877_155118934_155119017_155119125_155119394
transcript_80159.known	chr2	+	826	3	FSM	ENSMUSG00000027602.10	ENSMUST00000154596.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_2	23	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTTTGCCTCCAGCTG	NA	False	NA	6	True	AATAAA	-18	NA	155118808	155119988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155118934_155119017_155119125_155119394
transcript_80162.known	chr2	-	1636	12	FSM	ENSMUSG00000038383.17	ENSMUST00000077626.13	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_4	21.4987987363815	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGTTCTGATGACATGT	NA	False	NA	0	True	AATAAA	-23	NA	155199350	155120162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
transcript_80165.known	chr2	+	3979	4	FSM	ENSMUSG00000038375.16	ENSMUST00000043237.14	3979	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	13.490737563232	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCTGCCTCAGCTGAG	4041	False	NA	9	True	AATAAA	-21	NA	155223733	155231770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155223938_155227209_155227385_155227800_155228090_155228459
transcript_80166.known	chr2	+	740	4	FSM	ENSMUSG00000038375.16	ENSMUST00000174685.8	740	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	32.8261413442938	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCAGCCGTGCCAGCGC	4067	False	NA	NA	False	NA	NA	NA	155223759	155228677	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155223938_155227209_155227385_155227920_155228090_155228459
transcript_8017.known	chr10	+	3220	7	FSM	ENSMUSG00000019796.13	ENSMUST00000130590.8	3220	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	91.3947482079797	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTCTTATAAATTATAG	7427	False	NA	23	True	AATAAA	-30	NA	7465742	7501247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_7466378_7471867_7472029_7474470_7474613_7478592_7478719_7479937_7480148_7484311_7484404_7499393
transcript_80174.nnic	chr2	-	4082	14	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	120	junction_7	19.2079865046321	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACTTAAAGGTATGTTAT	NA	False	NA	-23	True	AATAAA	-13	NA	155315756	155232588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155315559
transcript_80176.known	chr2	-	7101	16	FSM	ENSMUSG00000038369.15	ENSMUST00000109670.8	7101	16	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_15	59.3121310432266	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGGTATGTTATTGGA	NA	False	NA	-19	True	AATAAA	-17	NA	155315726	155232584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155247394_155250371_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155291202_155291272_155315559
transcript_80177.nnic	chr2	-	3122	9	NNC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	0	522	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	43.0854891465793	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCGAAGAAGAAGAAACCGCC	NA	False	NA	NA	False	AATAAA	-25	NA	155315814	155256784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_155257849_155260797_155260912_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155315559
transcript_80178.nic	chr2	-	3155	9	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	0	522	combination_of_known_junctions	FALSE	canonical	3	120	junction_2	9.79078010170793	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCGAAGAAGAAGAAACCGCC	NA	False	NA	NA	False	AATAAA	-25	NA	155315814	155256784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155282607_155282706_155315559
transcript_80180.known	chr2	-	4850	10	FSM	ENSMUSG00000038369.15	ENSMUST00000123293.8	4850	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	54.5975172410696	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCTGGAAGTAACACCTC	NA	False	NA	NA	False	ATTAAA	-15	NA	155315814	155248752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155250371_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779_155280060_155315559
transcript_80182.known	chr2	+	2145	19	FSM	ENSMUSG00000027605.19	ENSMUST00000103142.12	2145	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	21.9854750030813	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGACTCTTGTCCAGGAT	2166	False	NA	NA	False	NA	NA	NA	155360026	155404000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155393109_155393149_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
transcript_80184.known	chr2	+	2931	18	FSM	ENSMUSG00000027605.19	ENSMUST00000029135.15	2931	18	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_8	8.02030295659528	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTTTTAGGTATCTG	2007	False	NA	19	True	AATAAA	-23	NA	155359867	155404666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
transcript_80191.known	chr2	-	2614	15	FSM	ENSMUSG00000027603.16	ENSMUST00000029131.11	2614	15	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_14	5.44593089061054	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTTGATTTCTGTTT	707	False	NA	NA	False	ATTAAA	-24	NA	155356768	155332298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155333037_155335528_155335629_155336765_155336904_155337561_155337680_155337793_155337944_155340682_155340772_155340933_155341062_155342622_155342711_155344555_155344753_155345047_155345122_155345331_155345400_155346623_155346742_155347874_155348027_155348245_155348482_155356548
transcript_802.nic	chr1	-	2574	10	ISM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	-70	14988	-2	1010	5prime_fragment	FALSE	canonical	3	234	junction_2	34.9253171464165	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGGAGGAGCAGCAGTAT	NA	False	NA	NA	False	NA	NA	NA	33853678	33815613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
transcript_8020.known	chr10	+	1492	6	FSM	ENSMUSG00000019796.13	ENSMUST00000134346.8	1492	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	107.578064678632	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAAGGAAATTATGAT	7248	False	NA	NA	False	NA	NA	NA	7465563	7484331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_7466378_7471867_7472029_7474455_7474613_7478592_7478719_7479937_7480148_7484307
transcript_80209.known	chr2	-	1724	12	FSM	ENSMUSG00000027610.18	ENSMUST00000130881.8	1724	12	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_11	301.306960254025	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAATGACTCATTGTT	8446	False	NA	-10	True	AATAAA	-11	NA	155434634	155405108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155434613
transcript_80211.known	chr2	+	727	3	FSM	ENSMUSG00000085317.2	ENSMUST00000130859.2	727	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCCGGGAAGGGGCATT	NA	False	NA	NA	False	NA	NA	NA	155433050	155434771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155433232_155433942_155434089_155434371
transcript_80212.known	chr2	+	3563	2	FSM	ENSMUSG00000027605.19	ENSMUST00000149788.2	3563	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAACTAAACAACA	2092	False	NA	NA	False	ATTAAA	-33	NA	155359952	155367211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155360205_155363900
transcript_80213.known	chr2	-	1963	13	FSM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_12	109.121491925285	2713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCATTGTTTCATGTAC	8350	False	NA	-2	True	AATAAA	-19	NA	155434730	155405100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
transcript_80234.known	chr2	-	3091	19	FSM	ENSMUSG00000038324.14	ENSMUST00000103140.5	3091	19	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	88.2006865682525	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTATTAAAGAACTTTATT	NA	False	NA	-30	True	AATAAA	-14	NA	155534252	155476227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155477061_155477155_155477363_155478115_155478229_155479577_155479687_155479967_155480109_155481392_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492482_155495412_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909_155515039_155534058
transcript_80235.known	chr2	-	3204	19	FSM	ENSMUSG00000038324.14	ENSMUST00000041059.12	3204	19	0	0	0	0	multi-exon	TRUE	canonical	3	309	junction_12	37.6501520663235	1087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGACTTTGTCCATGATGT	NA	False	NA	7	True	ATTAAA	-42	NA	155534304	155476190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155477061_155477155_155477363_155478115_155478229_155479577_155479687_155479967_155480109_155481392_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492506_155495412_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909_155515039_155534058
transcript_80266.known	chr2	-	2290	11	FSM	ENSMUSG00000038312.11	ENSMUST00000040833.5	2290	11	0	0	0	0	multi-exon	TRUE	canonical	3	287	junction_6	17.8672885463911	380	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAGTGCATTAGCGTCAG	NA	False	NA	NA	False	AATAAA	-12	NA	155571395	155543596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810_155570922_155571150
transcript_80272.known	chr2	-	1615	2	FSM	ENSMUSG00000074649.7	ENSMUST00000124586.2	1615	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTGTACAAACCTATGAAT	7099	False	NA	NA	False	NA	NA	NA	155661346	155659649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155661004_155661085
transcript_80275.known	chr2	-	1500	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	0	0	0	0	multi-exon	TRUE	canonical	3	1052	junction_5	244.745255316625	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGCTGTGTGTGTGTGT	NA	False	NA	-3	True	ATTAAA	-22	NA	155668845	155661751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
transcript_80278.known	chr2	-	1382	2	FSM	ENSMUSG00000027613.16	ENSMUST00000109638.2	1382	2	0	0	0	0	multi-exon	FALSE	canonical	3	1052	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTCCTTATGAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	155668583	155667085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155668131_155668246
transcript_80283.known	chr2	-	2633	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAACTTTACTGTGTG	NA	False	NA	-58	True	NA	NA	NA	155772230	155688840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
transcript_8029.known	chr10	+	976	3	FSM	ENSMUSG00000019796.13	ENSMUST00000135907.8	976	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	106	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCTGCCTTTTATTTGT	7575	False	NA	NA	False	NA	NA	NA	7465890	7499786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_7466378_7484307_7484404_7499393
transcript_80295.known	chr2	-	2313	9	FSM	ENSMUSG00000005882.19	ENSMUST00000109632.8	2313	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	148.423328270862	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCTCCTGGAATGGATG	NA	False	NA	-33	True	AATAAA	-18	NA	155771963	155688815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155690447_155693278_155693393_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
transcript_80305.known	chr2	-	1997	6	FSM	ENSMUSG00000005882.19	ENSMUST00000152818.8	1997	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	208.429940267707	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTGGAATGGATGGA	NA	False	NA	-31	True	AATAAA	-20	NA	155771980	155688813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700052_155753665_155753757_155763554_155763646_155771932
transcript_80309.known	chr2	+	7977	33	FSM	ENSMUSG00000038241.17	ENSMUST00000109619.9	7977	33	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	23.7977931946956	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGGCTGCTGTCTCTG	NA	False	NA	12	True	AATAAA	-19	NA	155798477	155840820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155798578_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810674_155810783_155811205_155811365_155811914_155812157_155812632_155812816_155813867_155814013_155815262_155815410_155816172_155816404_155817590_155817785_155818003_155818132_155818308_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
transcript_8031.known	chr10	-	2607	9	FSM	ENSMUSG00000019795.18	ENSMUST00000161123.8	2607	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	305.06638621782	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGATCCTTGGTAGTCA	NA	False	NA	0	True	AATAAA	-20	NA	7539028	7505136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524230_7524425_7524814_7524920_7538838
transcript_80335.known	chr2	+	4930	23	FSM	ENSMUSG00000038241.17	ENSMUST00000149905.8	4930	23	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_13	16.5455169828992	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAATAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	155798377	155828533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810674_155810783_155811205_155811365_155811914_155812816_155813867_155814013_155815262_155815410_155816169_155816404_155817590_155817785_155818003_155818132_155818308_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738
transcript_80336.known	chr2	+	1254	8	FSM	ENSMUSG00000038241.17	ENSMUST00000109618.2	1254	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	9.61291648072041	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAGTTAACTCATTCA	NA	False	NA	NA	False	AATAAA	-16	NA	155798513	155809714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477
transcript_80340.known	chr2	+	2310	15	FSM	ENSMUSG00000038241.17	ENSMUST00000151569.8	2310	15	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	16.8480605072852	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGAAAAGGAAGAGCTT	NA	False	NA	NA	False	GGGGCT	-29	NA	155798491	155816365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810677_155810783_155811205_155811365_155811914_155812157_155812632_155812816_155813867_155814013_155815262_155815410_155816172
transcript_80343.known	chr2	+	1377	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	0	0	0	0	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	361	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155849964	155860199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
transcript_8035.known	chr10	+	1286	8	FSM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_2	84.4680835751418	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAATGTTGGCTTGCTGCT	NA	False	NA	20	True	AATAAA	-20	NA	7543266	7554645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
transcript_80355.known	chr2	+	1473	12	FSM	ENSMUSG00000038180.12	ENSMUST00000038860.12	1473	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	5.51781487472492	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGTTTGTGCTAAAGAA	NA	False	NA	12	True	ATTAAA	-23	NA	155907163	155911421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155907592_155908053_155908159_155908486_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
transcript_80361.known	chr2	-	3492	17	FSM	ENSMUSG00000074643.13	ENSMUST00000109608.9	3492	17	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_15	81.3740399328926	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGTGGCCGCTCTTGT	NA	False	NA	-5	True	AATAAA	-16	NA	155953863	155913766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953705
transcript_80363.nic	chr2	-	3549	17	NIC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_15	70.9506595723394	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	-3	True	AATAAA	-18	NA	155953886	155913764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945350_155953705
transcript_80367.known	chr2	-	3441	16	FSM	ENSMUSG00000074643.13	ENSMUST00000109607.10	3441	16	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_15	28.8510350286124	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	-3	True	AATAAA	-18	NA	155953859	155913764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
transcript_8037.known	chr10	-	2757	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGATCCTTGGTAGTCA	NA	False	NA	0	True	AATAAA	-20	NA	7539372	7505136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_80375.known	chr2	-	2051	13	FSM	ENSMUSG00000027618.18	ENSMUST00000029147.16	2051	13	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	23.0952135493242	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTGAATTTTTGAGC	3106	False	NA	-2	True	AATAAA	-17	NA	155986106	155965558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
transcript_80387.nnic	chr2	-	1597	9	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	5472	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_8	81.7823903722556	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTGAATTTTTGAGC	3198	False	NA	-2	True	AATAAA	-17	NA	155976257	155965558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976098
transcript_8039.known	chr10	-	2491	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGTCTGGATCCTT	NA	False	NA	-8	True	AATAAA	-12	NA	7539067	7505144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_80391.nnic	chr2	-	853	7	NNC	ENSMUSG00000027618.18	novel	1649	4	NA	NA	-10	6406	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	101.365674663566	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATCGGGCACCAAAATG	3096	False	NA	NA	False	NA	NA	NA	155986116	155974020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_155974157_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
transcript_80392.known	chr2	-	1649	4	FSM	ENSMUSG00000027618.18	ENSMUST00000125449.2	1649	4	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	23.1564725772779	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGGCGGTGATGGCGC	3139	False	NA	NA	False	NA	NA	NA	155986073	155980426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155981733_155984045_155984163_155985286_155985379_155985939
transcript_80394.known	chr2	+	379	3	FSM	ENSMUSG00000067847.14	ENSMUST00000119950.2	379	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	474	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6552	False	NA	14	True	AATAAA	-19	NA	155986159	155987714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155986201_155986364_155986510_155987521
transcript_80395.known	chr2	-	6635	3	FSM	ENSMUSG00000089824.11	ENSMUST00000109604.9	6635	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_2	80.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCACAGTACTTCTTTG	NA	False	NA	-2	True	AATAAA	-37	NA	155953876	155933877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155940293_155945268_155945318_155953705
transcript_80397.known	chr2	-	6667	3	FSM	ENSMUSG00000089824.11	ENSMUST00000059647.12	6667	3	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_2	24	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCACAGTACTTCTTTG	NA	False	NA	-2	True	AATAAA	-37	NA	155953876	155933877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155940293_155945268_155945350_155953705
transcript_80398.known	chr2	-	709	3	FSM	ENSMUSG00000027618.18	ENSMUST00000109600.2	709	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	22	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCGCGGGTCAATGGGAC	3112	False	NA	0	True	TTTAAA	-6	NA	155986100	155983706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155984163_155985286_155985379_155985939
transcript_80399.known	chr2	+	550	2	FSM	ENSMUSG00000067847.14	ENSMUST00000109597.10	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	985	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6545	False	NA	14	True	AATAAA	-19	NA	155986152	155987714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_155986510_155987521
transcript_80425.known	chr2	-	2127	18	FSM	ENSMUSG00000027620.17	ENSMUST00000153514.8	2127	18	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_15	799.195928097666	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022104	155989859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156019306_156021096_156021161_156021806
transcript_80426.known	chr2	-	2120	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022096	155989859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
transcript_80434.known	chr2	-	2711	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGAAAATTTTCGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156022087	155989168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
transcript_80437.known	chr2	-	2810	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	0	0	0	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022158	155989158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
transcript_80448.known	chr2	-	1090	9	FSM	ENSMUSG00000027620.17	ENSMUST00000126992.8	1090	9	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_4	760.839000298355	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAATTTAATACATTTTT	NA	False	NA	NA	False	NA	NA	NA	156022062	156003748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156003886_156004648_156004802_156006725_156006844_156009457_156009509_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
transcript_80450.known	chr2	-	593	6	FSM	ENSMUSG00000027620.17	ENSMUST00000147098.8	593	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	953.776787304032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCAAAAGTCGAGAGCG	NA	False	NA	-6	True	AGTAAA	-34	NA	156022067	156014851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156014943_156016016_156016089_156018322_156018378_156019255_156019306_156021096_156021161_156021806
transcript_80458.nic	chr2	-	600	4	ISM	ENSMUSG00000027620.17	ENSMUST00000146288.8	754	6	-79	8083	0	43	5prime_fragment	FALSE	canonical	3	1623	junction_2	325.028545754916	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACGAAGCCGCTCACGC	NA	False	NA	37	True	AAAAAG	-41	NA	156022158	156014808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_156014943_156019255_156019306_156021096_156021161_156021806
transcript_80459.nic	chr2	-	510	4	ISM	ENSMUSG00000027620.17	ENSMUST00000146288.8	754	6	-79	8173	0	-25	5prime_fragment	FALSE	canonical	3	1623	junction_2	325.028545754916	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAAGTAAAGAACGG	NA	False	NA	-53	True	AAAAAG	-33	NA	156022158	156014898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_156014943_156019255_156019306_156021096_156021161_156021806
transcript_80461.known	chr2	-	672	4	FSM	ENSMUSG00000027620.17	ENSMUST00000132929.8	672	4	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	893.526844712694	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAACTGCTCAAAACAC	NA	False	NA	NA	False	NA	NA	NA	156022116	156019080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156019306_156020799_156020873_156021096_156021161_156021806
transcript_80467.nic	chr2	-	492	3	ISM	ENSMUSG00000027620.17	ENSMUST00000109584.8	667	4	-26	2562	-26	25	5prime_fragment	FALSE	canonical	3	1623	junction_1	363	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTTTGACTAAGGAACC	NA	False	NA	-1	True	NA	NA	NA	156022184	156019255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_156019306_156021096_156021161_156021806
transcript_80468.known	chr2	-	715	3	FSM	ENSMUSG00000027620.17	ENSMUST00000137340.2	715	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_1	908	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAAAAGAGGAAAAAAAA	NA	False	NA	-34	True	AATAGA	-6	NA	156022065	156020480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156020873_156021096_156021161_156021806
transcript_80469.known	chr2	-	1008	2	FSM	ENSMUSG00000027620.17	ENSMUST00000128243.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	2349	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAGGAAAAAAAACC	NA	False	NA	-32	True	AATAGA	-8	NA	156022132	156020478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156021161_156021806
transcript_80472.known	chr2	-	699	5	FSM	ENSMUSG00000027620.17	ENSMUST00000152919.3	699	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	947.747988655212	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGCCATGAAGAACGTAGC	NA	False	NA	-26	True	NA	NA	NA	156022069	156019280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156019306_156019552_156019827_156020799_156020873_156021096_156021161_156021806
transcript_80473.known	chr2	+	5737	18	FSM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	27.9815806939402	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCAGTCACATTACTG	NA	False	NA	9	True	AATAAA	-18	NA	156038561	156151872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
transcript_80477.nnic	chr2	+	1809	11	NNC	ENSMUSG00000038116.17	novel	5737	18	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	98.1965376171686	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAGAAAAAGAAAAAGAAA	NA	False	NA	NA	False	ACTAAA	-38	NA	156038553	156134448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109094_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
transcript_80484.nnic	chr2	+	1669	10	NIC	ENSMUSG00000038116.17	novel	5737	18	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	98.616478727154	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAGAAAAAGAAAAAGAAA	NA	False	NA	NA	False	ACTAAA	-38	NA	156038628	156134448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_156038718_156065254_156065370_156093695_156093868_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
transcript_80486.known	chr2	+	5524	17	FSM	ENSMUSG00000038116.17	ENSMUST00000152617.8	5524	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	116.307176799198	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGTGTCAGTCACATTA	NA	False	NA	6	True	AATAAA	-15	NA	156038653	156151869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156038718_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136200_156138575_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
transcript_80497.known	chr2	+	2277	13	FSM	ENSMUSG00000038085.14	ENSMUST00000037096.9	2277	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	2.37463447479583	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGCTTCTCTGTTCTCTGT	9994	False	NA	2	True	AATAAA	-12	NA	156154218	156217555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156154720_156161929_156161984_156170237_156170376_156175498_156175553_156177169_156177334_156180494_156180652_156181050_156181203_156183521_156183661_156195114_156195230_156207038_156207217_156209476_156209598_156215565_156215730_156217215
transcript_80498.known	chr2	-	803	2	FSM	ENSMUSG00000046229.11	ENSMUST00000079125.8	803	2	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_1	0	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCTGTGTCTTGCGTT	NA	False	NA	-4	True	AATAAA	-23	NA	156154667	156153765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156154323_156154421
transcript_80499.known	chr2	-	4915	1	FSM	ENSMUSG00000102869.3	ENSMUST00000192863.3	4915	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGGCGTCTCTACTGC	NA	False	NA	NA	False	AATAAA	-17	NA	156234899	156229984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156230000_156234900
transcript_80500.known	chr2	-	278	1	FSM	ENSMUSG00000061272.9	ENSMUST00000117690.2	278	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCCTGCTGTCTGAGAC	NA	False	NA	NA	False	NA	NA	NA	156253094	156252816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156252800_156253100
transcript_80505.known	chr2	+	6490	23	FSM	ENSMUSG00000027624.21	ENSMUST00000103137.10	6490	23	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_13	45.7648724866464	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7641	False	NA	13	True	AATAAA	-28	NA	156262828	156385134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156353704_156353741_156355947_156356131_156366800_156367209_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
transcript_80515.nic	chr2	+	3743	22	NIC	ENSMUSG00000027624.21	novel	6490	23	NA	NA	-30	859	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	40.1842694372323	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATAATTACCTGACTGTG	7611	False	NA	24	True	AATAAA	-34	NA	156262798	156382765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156353704_156353741_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
transcript_80517.known	chr2	+	6251	22	FSM	ENSMUSG00000027624.21	ENSMUST00000109577.9	6251	22	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_14	33.5816600417023	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7844	False	NA	13	True	AATAAA	-28	NA	156263031	156385134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156366800_156367209_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
transcript_80528.known	chr2	+	5904	21	FSM	ENSMUSG00000027624.21	ENSMUST00000109574.8	5904	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	32.516303602962	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7780	False	NA	13	True	AATAAA	-28	NA	156262967	156385134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352655_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
transcript_80530.nic	chr2	+	3691	21	NIC	ENSMUSG00000027624.21	novel	5904	21	NA	NA	-38	859	combination_of_known_junctions	FALSE	canonical	3	23	junction_12	31.2878171178496	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATAATTACCTGACTGTG	7603	False	NA	24	True	AATAAA	-34	NA	156262790	156382765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352676_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
transcript_80536.nnic	chr2	+	3425	21	NNC	ENSMUSG00000027624.21	novel	820	5	NA	NA	11844	859	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	33.6114191905073	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATAATTACCTGACTGTG	NA	False	NA	24	True	AATAAA	-34	NA	156274875	156382765	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_156275015_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
transcript_8054.known	chr10	-	1132	7	FSM	ENSMUSG00000019795.18	ENSMUST00000163085.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_3	37.7491721763537	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCATTCTTGCTTTATT	NA	False	NA	1	True	AATAAA	-21	NA	7539025	7513493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_80543.known	chr2	+	2766	5	FSM	ENSMUSG00000027628.11	ENSMUST00000109570.8	2766	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1190299365173	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCCCCTGTGTGAGTCTC	NA	False	NA	7	True	ATTAAA	-18	NA	156389503	156410076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156389804_156391804_156391948_156392568_156393370_156397746_156397977_156408784
transcript_80545.nic	chr2	+	2798	5	NIC	ENSMUSG00000027628.11	novel	2766	5	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	64.3481740222673	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCCCCTGTGTGAGTCTC	NA	False	NA	7	True	ATTAAA	-18	NA	156389504	156410076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_156389804_156391771_156391948_156392568_156393370_156397746_156397977_156408784
transcript_80547.known	chr2	+	3427	4	FSM	ENSMUSG00000027628.11	ENSMUST00000029158.4	3427	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_3	2.16024689946929	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATTCAGTTTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	156389515	156410892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156389804_156392568_156393370_156397746_156397977_156408784
transcript_80548.nnic	chr2	+	2374	4	NNC	ENSMUSG00000027628.11	novel	2766	5	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	61.0482504981829	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCCCCTGTGTGAGTCTC	NA	False	NA	7	True	ATTAAA	-18	NA	156389493	156410076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_156389545_156392568_156393370_156397746_156397977_156408784
transcript_80551.known	chr2	+	4851	13	FSM	ENSMUSG00000061689.16	ENSMUST00000169464.9	4851	13	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	158.364996833967	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGCCTCATGGTGTTATT	NA	False	NA	7	True	NA	NA	NA	156455624	156606283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156455779_156506718_156506904_156542525_156543595_156546329_156546575_156547775_156547891_156548997_156549049_156552940_156553182_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_80553.nnic	chr2	+	3373	13	NNC	ENSMUSG00000061689.16	novel	3303	11	NA	NA	29653	0	intron_retention	FALSE	canonical	1	3	junction_1	158.899579574299	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACAGCGTTTCTCACCC	9352	False	NA	11	True	ATTAAA	-14	NA	156485277	156604875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_156485362_156506718_156506904_156542525_156543595_156546329_156546575_156547775_156547891_156548997_156549049_156552940_156553182_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_80557.known	chr2	+	3402	7	FSM	ENSMUSG00000061689.16	ENSMUST00000099145.6	3402	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	125.628309796089	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGCCTCATGGTGTTATT	NA	False	NA	7	True	NA	NA	NA	156563411	156606283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156564023_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_80560.nnic	chr2	+	2049	7	NNC	ENSMUSG00000061689.16	novel	4840	13	NA	NA	8900	0	intron_retention	FALSE	canonical	3	40	junction_1	119.417219119448	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACAGCGTTTCTCACCC	NA	False	NA	11	True	ATTAAA	-14	NA	156572311	156604875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_156572978_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_80561.nnic	chr2	+	2481	7	NNC	ENSMUSG00000061689.16	novel	4840	13	NA	NA	8637	0	intron_retention	FALSE	canonical	3	40	junction_1	119.417219119448	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTAGAACCTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	156572048	156605044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_156572978_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_80565.known	chr2	+	4083	5	FSM	ENSMUSG00000061689.16	ENSMUST00000127944.9	4083	5	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_1	85.3591676388658	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACAGCGTTTCTCACCC	NA	False	NA	11	True	ATTAAA	-14	NA	156562965	156604875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156563008_156587754_156591277_156602770_156602863_156603692_156603849_156604604
transcript_80566.known	chr2	+	1128	4	FSM	ENSMUSG00000067818.7	ENSMUST00000088552.7	1128	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGTCTATGTGTCTGT	3654	False	NA	NA	False	AATACA	-14	NA	156617339	156623578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156617427_156620438_156620649_156622401_156622564_156622909
transcript_8058.known	chr10	-	1369	6	FSM	ENSMUSG00000019795.18	ENSMUST00000160250.2	1369	6	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_2	40.4009900868778	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	7539372	7515422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_80582.nnic	chr2	-	772	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-75	59868	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	68.5127725318426	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGGTCATAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	156681887	156615100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_156615230_156679742_156679834_156680337_156680457_156681454
transcript_80592.nic	chr2	-	3427	4	NIC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-19	2343	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	68.6164865190737	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	1	True	NA	NA	NA	156681831	156672625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_156675347_156679742_156679834_156680337_156680457_156681335
transcript_80593.known	chr2	-	874	4	FSM	ENSMUSG00000087179.9	ENSMUST00000137463.8	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	57.393379409127	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGAGGGGGACACTGT	NA	False	NA	NA	False	NA	NA	NA	156681740	156674968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156675347_156679742_156679834_156680337_156680457_156681454
transcript_80594.nic	chr2	-	3121	4	NIC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-13	2343	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	55.3915356550279	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	1	True	NA	NA	NA	156681825	156672625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_156675347_156679742_156679834_156680337_156680457_156681635
transcript_80598.nnic	chr2	-	4678	4	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-41	2343	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	77.271527025735	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	1	True	NA	NA	NA	156681853	156672625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_156676959_156679742_156679834_156680337_156680457_156681718
transcript_8060.known	chr10	+	458	2	FSM	ENSMUSG00000040034.16	ENSMUST00000162346.2	458	2	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAATGGAATTCAGGTAA	NA	False	NA	NA	False	GGGGCT	-1	NA	7543277	7544055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_7543446_7543765
transcript_80605.known	chr2	+	2690	4	FSM	ENSMUSG00000062175.14	ENSMUST00000073352.10	2690	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	80.1373820385967	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682019	156697490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156682159_156686075_156686302_156695048_156695149_156695265
transcript_80612.known	chr2	+	2900	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_2	7.5	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156681926	156697490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156682159_156686075_156686302_156695048
transcript_80614.nnic	chr2	+	2840	3	NNC	ENSMUSG00000062175.14	novel	2900	3	NA	NA	246	0	intron_retention	FALSE	canonical	3	30	junction_1	93.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682265	156697490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_156682438_156686075_156686302_156695048
transcript_80616.nic	chr2	+	3054	3	NIC	ENSMUSG00000062175.14	novel	484	4	NA	NA	-317	0	intron_retention	FALSE	canonical	3	38	junction_1	89.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682624	156697490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_156683011_156686075_156686302_156695048
transcript_80618.known	chr2	-	1196	3	FSM	ENSMUSG00000085741.9	ENSMUST00000176134.2	1196	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	9	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAATAAAACTTAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	156704865	156694349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156694611_156695350_156695939_156704518
transcript_80624.known	chr2	+	1045	4	FSM	ENSMUSG00000027637.4	ENSMUST00000029165.4	1045	4	0	0	0	0	multi-exon	FALSE	canonical	3	1149	junction_1	99.8031395631754	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGCATGCCTGGTA	4642	False	NA	14	True	AATAAA	-18	NA	156705047	156715483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156705338_156707176_156707281_156714257_156714388_156714962
transcript_80627.known	chr2	+	765	3	FSM	ENSMUSG00000027637.4	ENSMUST00000152551.2	765	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	636.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTGGTTCTCCGTCAG	4653	False	NA	NA	False	NA	NA	NA	156705058	156715318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_156705338_156714257_156714388_156714962
transcript_80628.known	chr2	-	2612	17	FSM	ENSMUSG00000027634.15	ENSMUST00000069600.13	2612	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	53.8324948335111	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5927	False	NA	0	True	AATAAA	-22	NA	156833963	156769264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156770802_156771851_156771891_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
transcript_8063.nic	chr10	+	2543	4	ISM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	-41	13214	-41	-10340	5prime_fragment	FALSE	canonical	3	58	junction_3	34.7658836600865	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATCATAGCATTTTCAGT	NA	False	NA	NA	False	AGTAAA	-15	NA	7556936	7579010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_7557215_7567098_7567579_7573265_7573414_7577373
transcript_80631.known	chr2	-	2586	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2644786258439	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5914	False	NA	0	True	AATAAA	-22	NA	156833976	156769264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
transcript_80633.nnic	chr2	-	2631	15	NIC	ENSMUSG00000027634.15	novel	2586	16	NA	NA	-81	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_13	42.7715812574811	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5833	False	NA	0	True	AATAAA	-22	NA	156834057	156769264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156811956_156812059_156833918
transcript_80642.known	chr2	-	2080	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_10	28.450131809888	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTATGTGACAGTGTGT	8134	False	NA	-6	True	AATAAA	-30	NA	156848995	156837184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
transcript_80644.known	chr2	-	2636	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103130.8	2636	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	60.8885046622103	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGAAGTGTACACTAT	8055	False	NA	-18	True	AATAAA	-18	NA	156849074	156837196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156848283_156848894
transcript_80651.nnic	chr2	-	2319	11	NNC	ENSMUSG00000027635.16	novel	2080	11	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	63.1497426756436	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGAAGTGTACACTAT	8330	False	NA	-18	True	AATAAA	-18	NA	156848799	156837196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848447
transcript_80653.nnic	chr2	-	2123	11	NNC	ENSMUSG00000027635.16	novel	2080	11	NA	NA	144	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	61.4528274369862	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGAAGTGTACACTAT	8323	False	NA	-18	True	AATAAA	-18	NA	156848806	156837196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848650
transcript_80667.known	chr2	-	2036	17	FSM	ENSMUSG00000027639.17	ENSMUST00000139263.8	2036	17	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	54.3495630157226	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	False	NA	-5	True	AGTAAA	-18	NA	156977040	156941320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156941424_156943240_156943364_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
transcript_80669.known	chr2	-	3926	16	FSM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	26.3435423248701	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTCTCGAGTTACTG	NA	False	NA	-5	True	ATTAAA	-18	NA	156977185	156939452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
transcript_8067.nic	chr10	+	1200	3	ISM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	-41	18517	-41	-15643	5prime_fragment	FALSE	canonical	3	105	junction_1	19	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGCCCTGCTCTCTCTCA	NA	False	NA	1	True	NA	NA	NA	7556936	7573707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_7557215_7567098_7567579_7573265
transcript_80674.known	chr2	-	1375	7	FSM	ENSMUSG00000027639.17	ENSMUST00000149313.8	1375	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	78.9887474405198	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTGTGTTGTTTTTAT	NA	False	NA	NA	False	AATAAA	-11	NA	156976857	156961483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156962312_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
transcript_80678.known	chr2	-	4862	22	FSM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_1	43.0171615808876	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGTACTTTTTACTGCT	NA	False	NA	NA	False	NA	NA	NA	157046432	156987812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_156989597_156992588_156992754_156994815_156994965_157001579_157001659_157003299_157003372_157005458_157005636_157009154_157009367_157011786_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_80685.nic	chr2	-	2872	17	ISM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	-256	17643	-234	3442	5prime_fragment	FALSE	canonical	3	55	junction_4	39.5343501748796	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATAGGATGGGAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	157046688	157005455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_157005636_157009154_157009367_157011786_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_80686.nic	chr2	-	2326	15	ISM	ENSMUSG00000027641.14	ENSMUST00000154721.8	2715	16	-5	2814	-5	-2814	5prime_fragment	FALSE	canonical	3	55	junction_2	35.4011991034087	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATAACTCTGTATTTTT	NA	False	NA	NA	False	CATAAA	-34	NA	157046459	157011711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_80688.known	chr2	-	2383	13	FSM	ENSMUSG00000027641.14	ENSMUST00000124518.2	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	21.3559450478992	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGACTTGTATACATGT	NA	False	NA	-6	True	NA	NA	NA	157046446	157016905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_80706.known	chr2	+	2756	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	0	0	0	0	multi-exon	TRUE	canonical	3	1870	junction_1	194.730412606121	1433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTCTTCTGTGATAAA	NA	False	NA	20	True	AATAAA	-17	NA	157120978	157168239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
transcript_80715.known	chr2	+	2314	17	FSM	ENSMUSG00000027642.16	ENSMUST00000127252.8	2314	17	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	580.610235953303	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGATGGAGCCTTGCA	NA	False	NA	17	True	AATAAA	-18	NA	157121345	157167976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157121444_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
transcript_80725.known	chr2	+	1107	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	136	586	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5217	False	NA	30	True	AATAAA	-17	NA	157209513	157238683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157209561_157220968_157221175_157237829
transcript_80742.nnic	chr2	+	4132	15	NNC	ENSMUSG00000027646.16	novel	3586	12	NA	NA	2086	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	44.3039133112852	91	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157262449	157313755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_157262723_157263520_157263636_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
transcript_80746.known	chr2	+	3887	15	FSM	ENSMUSG00000027646.16	ENSMUST00000092576.11	3887	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	51.505696138329	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTCAGCAGTTTATTG	NA	False	NA	10	True	ATTAAA	-16	NA	157266212	157313758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157266335_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157300762_157300781_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
transcript_80748.nnic	chr2	+	4172	15	NIC	ENSMUSG00000027646.16	novel	3887	15	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	47.6961043204467	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157266014	157313755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_157266335_157266747_157266856_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
transcript_8075.known	chr10	+	1775	11	FSM	ENSMUSG00000019794.14	ENSMUST00000165806.8	1775	11	0	0	0	0	multi-exon	TRUE	canonical	3	353	junction_4	21.6323831327018	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTCAATTTAGCACC	NA	False	NA	10	True	AATAAA	-19	NA	7601763	7638914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553
transcript_80754.known	chr2	+	3813	14	FSM	ENSMUSG00000027646.16	ENSMUST00000109533.8	3813	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	40.0953006734539	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157260363	157313755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157260433_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
transcript_80756.nnic	chr2	+	3998	14	NNC	ENSMUSG00000027646.16	novel	3586	12	NA	NA	2105	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	38.5845724450749	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157262468	157313755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_157262723_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
transcript_80758.nnic	chr2	+	3922	14	NNC	ENSMUSG00000027646.16	novel	3586	12	NA	NA	-297	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	38.5845724450749	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157265738	157313755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_157265917_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
transcript_80760.known	chr2	+	3906	14	FSM	ENSMUSG00000027646.16	ENSMUST00000029175.14	3906	14	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	27.1024791983727	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGACTGTGTGTGGGAATAA	NA	False	NA	34	True	ATTAAA	-40	NA	157266199	157313782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157266335_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
transcript_80764.nnic	chr2	+	4263	14	NIC	ENSMUSG00000027646.16	novel	3586	12	NA	NA	25	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	36.0835650766253	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTGGTCAGCAGTTTA	NA	False	NA	7	True	ATTAAA	-13	NA	157266336	157313755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_157266856_157281120_157281198_157297510_157297688_157298996_157299252_157300453_157300554_157304629_157304729_157304898_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
transcript_80778.known	chr2	-	332	1	FSM	ENSMUSG00000081740.4	ENSMUST00000117142.2	332	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAATGGAGAGTAAATAA	NA	False	NA	NA	False	NA	NA	NA	157363948	157363616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_157363600_157363900
transcript_80779.known	chr2	+	1213	3	FSM	ENSMUSG00000067786.17	ENSMUST00000109526.2	1213	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGTGGCTTCTTTT	9293	False	NA	12	True	NA	NA	NA	157402029	157404442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157402181_157403132_157403214_157403461
transcript_80782.known	chr2	+	1146	2	FSM	ENSMUSG00000067786.17	ENSMUST00000153739.9	1146	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGGGTGCACCAAAAAGT	9261	False	NA	-6	True	NA	NA	NA	157401997	157404424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157402181_157403461
transcript_80783.known	chr2	-	2108	2	FSM	ENSMUSG00000067787.11	ENSMUST00000088494.3	2108	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTTTTATGTGGCT	NA	False	NA	-12	True	AATAAA	-16	NA	157408281	157398281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_157400248_157408139
transcript_80784.known	chr2	-	2056	2	FSM	ENSMUSG00000067787.11	ENSMUST00000109528.9	2056	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTTTTATGTGGCT	NA	False	NA	-12	True	AATAAA	-16	NA	157408257	157398281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_157400248_157408167
transcript_80785.known	chr2	-	629	2	FSM	ENSMUSG00000087547.2	ENSMUST00000131365.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATCTGGCCAAATATG	8707	False	NA	-13	True	NA	NA	NA	157439240	157437502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_157437906_157439014
transcript_80787.known	chr2	+	2442	16	FSM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_9	43.3601968015214	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCTTCTCTAGTCTTGC	NA	False	NA	NA	False	GGGGCT	-25	NA	157579320	157733534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
transcript_80792.nic	chr2	+	3261	4	ISM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	26	99791	26	-14909	5prime_fragment	FALSE	canonical	3	527	junction_3	51.0751080925598	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAATTTTTAATCTTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	157579346	157633743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911
transcript_80798.known	chr2	-	3830	8	FSM	ENSMUSG00000027650.13	ENSMUST00000029179.11	3830	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_3	12.5746749055231	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGAGAGATTTATTTCT	NA	False	NA	-8	True	NA	NA	NA	157870353	157823722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
transcript_808.known	chr1	-	11876	4	FSM	ENSMUSG00000042197.14	ENSMUST00000044455.8	11876	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	149.247743329301	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCTTTCTTTTTTT	NA	False	NA	4	True	TATAAA	-14	NA	33853651	33831216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_33842695_33844419_33844501_33852807_33852892_33853418
transcript_80804.known	chr2	+	4399	8	FSM	ENSMUSG00000027651.17	ENSMUST00000109518.8	4399	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	76.3520310997764	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870620	157920127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157912480_157912577_157916849
transcript_80807.known	chr2	+	4283	7	FSM	ENSMUSG00000027651.17	ENSMUST00000029180.14	4283	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	20.3749573960018	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870640	157920127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157916849
transcript_80808.known	chr2	+	4504	7	FSM	ENSMUSG00000027651.17	ENSMUST00000103123.10	4504	7	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_3	28.7807806241133	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870416	157920127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
transcript_80809.nic	chr2	+	1273	6	ISM	ENSMUSG00000027651.17	ENSMUST00000109518.8	4399	8	-254	19386	-50	10111	5prime_fragment	FALSE	canonical	3	131	junction_3	21.5090678552093	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGTGAGTACATTGCA	NA	False	NA	NA	False	AATACA	-42	NA	157870366	157900741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571
transcript_80812.nic	chr2	+	1270	6	ISM	ENSMUSG00000027651.17	ENSMUST00000103123.10	4504	7	-50	19386	-50	10111	5prime_fragment	FALSE	canonical	3	106	junction_3	31.2832223404176	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGTGAGTACATTGCA	NA	False	NA	NA	False	AATACA	-42	NA	157870366	157900741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889838_157889949_157892006_157892134_157900571
transcript_80815.known	chr2	+	4179	6	FSM	ENSMUSG00000027651.17	ENSMUST00000156552.8	4179	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	66.332495807108	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870611	157920127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_157870966_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
transcript_80821.known	chr2	-	3596	13	FSM	ENSMUSG00000037820.16	ENSMUST00000103122.10	3596	13	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_8	19.1534374634598	829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGCCTTGTCCTTT	8806	False	NA	NA	False	AATAAA	-22	NA	157988356	157958321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_157959872_157960766_157960904_157962044_157962206_157966040_157966311_157969031_157969275_157970558_157970663_157971242_157971379_157973250_157973429_157974348_157974478_157976170_157976290_157980626_157980870_157984914_157985095_157988210
transcript_80833.known	chr2	-	1876	6	FSM	ENSMUSG00000037820.16	ENSMUST00000140923.8	1876	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	17.04582060213	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAGAAAAAGAAAAAGG	8876	False	NA	NA	False	NA	NA	NA	157988286	157972299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_157973429_157974348_157974478_157976170_157976290_157980626_157980870_157984914_157985095_157988210
transcript_80834.nnic	chr2	-	2007	10	NNC	ENSMUSG00000037813.14	novel	3910	14	NA	NA	17283	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	2.51415744421884	15	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTTTGTTTTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	158053859	158037670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_158038574_158042073_158042287_158042880_158043004_158044992_158045132_158046579_158046729_158047620_158047720_158050332_158050450_158052058_158052143_158053539_158053634_158053773
transcript_80837.known	chr2	+	1911	15	FSM	ENSMUSG00000052922.10	ENSMUST00000109500.8	1911	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.479157423749955	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTAGATTCTGTGTGCCGG	NA	False	NA	NA	False	NA	NA	NA	158100013	158126448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158100345_158102986_158103102_158103251_158103381_158104272_158104432_158105364_158105429_158109650_158109715_158110761_158110854_158113856_158114034_158115070_158115131_158116594_158116763_158117841_158117910_158118880_158118924_158123374_158123439_158124163_158124241_158126148
transcript_80838.known	chr2	+	2525	15	FSM	ENSMUSG00000016024.10	ENSMUST00000016168.9	2525	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1.75691055374984	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGTTAGGCCCCCAGGCT	NA	False	NA	NA	False	AATAAA	-18	NA	158148412	158174772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158148714_158150600_158150716_158151520_158151650_158155392_158155549_158156072_158156137_158159456_158159521_158161591_158161684_158162183_158162361_158163974_158164035_158166428_158166597_158167626_158167695_158168147_158168191_158169436_158169501_158170265_158170343_158173825
transcript_80847.known	chr2	-	933	6	FSM	ENSMUSG00000085385.8	ENSMUST00000133449.8	933	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	32.8048776861003	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8289	False	NA	3	True	AATAAA	-32	NA	158203500	158197684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_158197962_158199117_158199184_158201101_158201252_158202383_158202520_158202862_158202991_158203324
transcript_80850.nic	chr2	-	977	6	NIC	ENSMUSG00000085385.8	novel	933	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	23.4059821413245	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8326	False	NA	-17	True	AATAAA	-12	NA	158203463	158197704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202383_158202520_158202862_158202991_158203324
transcript_80851.known	chr2	-	1553	6	FSM	ENSMUSG00000085385.8	ENSMUST00000141809.8	1553	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	43.611924974713	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGAAACTGGTAAAGAG	8359	False	NA	NA	False	AAGAAA	-33	NA	158203430	158197226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_158197962_158199117_158199184_158201101_158201353_158202378_158202520_158202862_158203117_158203324
transcript_80852.nic	chr2	-	914	6	NIC	ENSMUSG00000085385.8	novel	1046	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	30.9476978142155	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8326	False	NA	-17	True	AATAAA	-12	NA	158203463	158197704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202446_158202520_158202862_158202991_158203324
transcript_80857.known	chr2	-	2007	5	FSM	ENSMUSG00000085385.8	ENSMUST00000154030.8	2007	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	13.2193040664023	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8347	False	NA	3	True	AATAAA	-32	NA	158203442	158197684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_158197962_158199117_158199184_158201101_158202520_158202862_158202991_158203324
transcript_80861.known	chr2	-	3896	4	FSM	ENSMUSG00000085385.8	ENSMUST00000149667.8	3896	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	13.8884444373331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8356	False	NA	-17	True	AATAAA	-12	NA	158203433	158197704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_158197962_158199117_158202520_158202862_158202991_158203324
transcript_80862.known	chr2	-	529	4	FSM	ENSMUSG00000085385.8	ENSMUST00000151331.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	19.7989898732233	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCCCTTCTCCGGAGAG	8394	False	NA	NA	False	NA	NA	NA	158203395	158201158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_158201353_158202383_158202520_158202862_158202991_158203324
transcript_80863.known	chr2	+	786	6	FSM	ENSMUSG00000044349.17	ENSMUST00000138307.2	786	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.2614551505325	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGACTCTGGAGACTTGGG	NA	False	NA	NA	False	NA	NA	NA	158217644	158222982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158217809_158218000_158218247_158218652_158218745_158218913_158218993_158222690_158222772_158222858
transcript_80864.known	chr2	+	5864	5	FSM	ENSMUSG00000044349.17	ENSMUST00000109488.8	5864	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	1.92028643696715	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTCGGTCACATGTT	NA	False	NA	21	True	NA	NA	NA	158217557	158228065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158217809_158218000_158218247_158218913_158218993_158222690_158222772_158222858
transcript_80865.known	chr2	+	8366	30	FSM	ENSMUSG00000027652.16	ENSMUST00000046274.12	8366	30	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_15	22.7822239150626	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTGTGCTTTTGGTT	NA	False	NA	29	True	ATTAAA	-26	NA	158251772	158341173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158252024_158262733_158262950_158268084_158268288_158272336_158272501_158274653_158274841_158277377_158277510_158278409_158278589_158278922_158279072_158279179_158279397_158282689_158282892_158285157_158285326_158285746_158285862_158286492_158286641_158288048_158288114_158290239_158290370_158292108_158292231_158296043_158296227_158298370_158298523_158303990_158304179_158305991_158306099_158307738_158307892_158308655_158308866_158315042_158315202_158318024_158318191_158319560_158319684_158324284_158324422_158334283_158334393_158334854_158334934_158336544_158336694_158337370
transcript_80870.known	chr2	+	3842	9	FSM	ENSMUSG00000027652.16	ENSMUST00000143394.8	3842	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_6	11.5866302262565	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCTATTGTAGTTTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	158251798	158281566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158252024_158262733_158262950_158268084_158268288_158272336_158272501_158274653_158274841_158277377_158277510_158278409_158278589_158278922_158279072_158279179
transcript_80871.known	chr2	+	2402	9	FSM	ENSMUSG00000037761.17	ENSMUST00000045644.9	2402	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	35.8634563309227	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGTGTGTGCCACTGT	NA	False	NA	NA	False	TTTAAA	-26	NA	158466807	158481131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158467437_158468246_158468477_158469976_158470147_158473382_158473601_158474191_158474375_158477226_158477347_158477927_158478068_158478587_158478721_158480552
transcript_80876.known	chr2	+	2970	8	FSM	ENSMUSG00000037761.17	ENSMUST00000142531.8	2970	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	38.2691861978394	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGGAGTGTTTATTCTG	NA	False	NA	NA	False	TTTAAA	-13	NA	158466807	158481118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158467437_158468246_158468477_158469976_158470147_158473382_158473601_158474191_158474375_158477226_158478068_158478587_158478721_158480552
transcript_80879.known	chr2	+	1960	3	FSM	ENSMUSG00000037761.17	ENSMUST00000125390.8	1960	3	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	4.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATTAC	NA	False	NA	NA	False	NA	NA	NA	158466807	158471077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158467437_158468246_158468477_158469976
transcript_80880.known	chr2	+	2266	4	FSM	ENSMUSG00000027654.3	ENSMUST00000029183.3	2266	4	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_3	16.3571255285137	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGATTCTTTTTGTT	406	False	NA	8	True	AATAAA	-16	NA	158610012	158628557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158610508_158621764_158621933_158625052_158625178_158627079
transcript_80886.known	chr2	+	3249	22	FSM	ENSMUSG00000027655.15	ENSMUST00000145692.8	3249	22	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	22.9958095364314	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTCTCCTGTCTGTGG	NA	False	NA	28	True	AGTAAA	-19	NA	158636781	158700134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657329_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158668338_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
transcript_80889.known	chr2	+	3284	22	FSM	ENSMUSG00000027655.15	ENSMUST00000109478.9	3284	22	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_9	12.5862106454921	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTCTCCTGTCTGTGG	NA	False	NA	28	True	AGTAAA	-19	NA	158636726	158700134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657349_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158668338_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
transcript_80892.known	chr2	+	3856	21	FSM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_7	40.333949719808	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCGTCTGCCTGTTTGT	NA	False	NA	23	True	AATAAA	-21	NA	160487807	160564684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
transcript_80898.nic	chr2	+	1329	11	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-21	19085	-21	0	5prime_fragment	FALSE	canonical	3	359	junction_7	35.6084259691439	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAGAAAAATTGGTATG	NA	False	NA	NA	False	NA	NA	NA	160487786	160545599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491
transcript_8090.nic	chr10	+	607	4	ISM	ENSMUSG00000019794.14	ENSMUST00000019929.13	1774	11	4	19440	4	-9040	5prime_fragment	FALSE	canonical	3	413	junction_2	4.18993502999218	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACAGAGTAAGGGAAGAGA	NA	False	NA	NA	False	AAGAAA	-1	NA	7601767	7619473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319
transcript_80901.nic	chr2	+	861	7	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-21	32427	-21	-3379	5prime_fragment	FALSE	canonical	3	362	junction_4	35.1314990033477	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAAGAGGAAGAGGTTAG	NA	False	NA	NA	False	NA	NA	NA	160487786	160532257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196
transcript_80902.nic	chr2	+	721	6	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	58	35021	-34	2792	5prime_fragment	FALSE	canonical	3	362	junction_4	37.8386046254351	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTATTTCTTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	160487865	160529663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567
transcript_80904.nic	chr2	+	677	5	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-21	38288	-21	-475	5prime_fragment	FALSE	canonical	3	362	junction_4	42.2670084108161	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAAAAGGAAAATGGCT	NA	False	NA	NA	False	AATAAA	-1	NA	160487786	160526396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367
transcript_80905.nic	chr2	+	568	4	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-21	40070	-21	-2257	5prime_fragment	FALSE	canonical	3	398	junction_3	29.7806797922561	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAACACAAAGATGGCAGC	NA	False	NA	-41	True	CATAAA	-35	NA	160487786	160524614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570
transcript_80906.nic	chr2	+	638	4	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-21	40000	-21	-2187	5prime_fragment	FALSE	canonical	3	398	junction_3	29.7806797922561	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGGAAAAGGTACAGAACT	NA	False	NA	29	True	NA	NA	NA	160487786	160524684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570
transcript_80907.nic	chr2	+	429	3	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	74	52562	-18	-14749	5prime_fragment	FALSE	canonical	3	453	junction_1	7	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGAATTGACCAACAGCG	NA	False	NA	58	True	NA	NA	NA	160487881	160512122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_160488183_160488527_160488553_160512019
transcript_8091.known	chr10	-	1525	8	FSM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	0	0	0	0	multi-exon	TRUE	canonical	3	252	junction_3	35.482102415679	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAATTGCTTTATTT	7489	False	NA	-10	True	AATAAA	-8	NA	7656655	7643719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_7644350_7646120_7646285_7649061_7649196_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
transcript_80911.nic	chr2	+	5214	33	NIC	ENSMUSG00000016933.18	novel	5107	32	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	165	junction_14	23.8978947817585	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTAACTTGTTTGTT	NA	False	NA	16	True	AATAAA	-17	NA	160573172	160605206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_160573265_160573637_160573954_160589694_160589848_160589953_160590048_160590201_160590250_160592882_160592968_160593062_160593147_160593355_160593391_160593552_160593626_160593703_160593806_160594007_160594127_160594214_160594301_160594373_160594495_160595104_160595274_160595361_160595485_160595562_160595665_160595743_160595932_160596204_160596406_160596482_160596603_160596680_160596862_160597660_160597739_160598460_160598565_160598789_160598887_160599133_160599204_160599891_160600050_160601373_160601471_160601601_160601827_160601902_160602052_160602999_160603115_160603224_160603387_160603479_160603569_160603658_160603844_160604013
transcript_80921.known	chr2	+	4388	33	FSM	ENSMUSG00000016933.18	ENSMUST00000151590.8	4388	33	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	44.0919560230378	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAGAAGGAGAAGGAGGA	NA	False	NA	6	True	NA	NA	NA	160573219	160604422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_160573265_160573637_160573954_160589694_160589848_160589953_160590048_160590201_160590250_160592882_160592968_160593062_160593147_160593355_160593391_160593552_160593626_160593703_160593806_160594007_160594127_160594214_160594301_160594373_160594495_160595104_160595274_160595361_160595490_160595562_160595665_160595743_160595932_160596204_160596406_160596482_160596603_160596680_160596862_160597660_160597739_160598460_160598565_160598789_160598887_160599133_160599204_160599891_160600050_160601373_160601471_160601601_160601827_160601902_160602052_160602999_160603115_160603224_160603387_160603479_160603569_160603658_160603844_160604013
transcript_80922.known	chr2	+	5107	32	FSM	ENSMUSG00000016933.18	ENSMUST00000109462.8	5107	32	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_13	22.7747418375012	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTAACTTGTTTGTT	NA	False	NA	16	True	AATAAA	-17	NA	160573652	160605206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_160573954_160589694_160589848_160589953_160590048_160590201_160590250_160592882_160592968_160593062_160593147_160593355_160593391_160593552_160593626_160593703_160593806_160594007_160594127_160594214_160594301_160594373_160594495_160595104_160595274_160595361_160595485_160595562_160595665_160595743_160595932_160596204_160596406_160596482_160596603_160596680_160596862_160597660_160597739_160598460_160598565_160598789_160598887_160599133_160599204_160599891_160600050_160601373_160601471_160601601_160601827_160601902_160602052_160602999_160603115_160603224_160603387_160603479_160603569_160603658_160603844_160604013
transcript_80925.known	chr2	+	3215	20	FSM	ENSMUSG00000027412.13	ENSMUST00000109457.3	3215	20	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	11.783363078059	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCTAGGCCATTGGCTC	NA	False	NA	NA	False	ATTAAA	-30	NA	160730090	160747712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_160730138_160733915_160734309_160735913_160736010_160737242_160737494_160737670_160737752_160738669_160738791_160738934_160739287_160740549_160740650_160740788_160740950_160741489_160741584_160741679_160741750_160743547_160743671_160743752_160743797_160744482_160744622_160745522_160745672_160745843_160745931_160746402_160746556_160746719_160746835_160746922_160747027_160747177
transcript_80928.known	chr2	+	3458	20	FSM	ENSMUSG00000027412.13	ENSMUST00000040872.13	3458	20	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_3	8.54837950981163	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGAGAACCACGGTCCTT	NA	False	NA	NA	False	NA	NA	NA	160730027	160747922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_160730138_160733915_160734309_160735913_160736010_160737242_160737494_160737670_160737752_160738669_160738791_160738934_160739287_160740549_160740650_160740788_160740950_160741489_160741584_160741679_160741750_160743577_160743671_160743752_160743797_160744482_160744622_160745522_160745672_160745843_160745931_160746402_160746556_160746719_160746835_160746922_160747027_160747177
transcript_8093.known	chr10	-	1405	1	FSM	ENSMUSG00000040006.14	ENSMUST00000188270.2	1405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATTTCAACTCC	NA	False	NA	NA	False	NA	NA	NA	7668588	7667183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_7667200_7668600
transcript_80932.known	chr2	+	3365	19	FSM	ENSMUSG00000027412.13	ENSMUST00000109455.9	3365	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	12.0932590140229	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGAGAACCACGGTCCTT	NA	False	NA	NA	False	NA	NA	NA	160730027	160747922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_160730138_160733915_160734309_160735913_160736010_160737242_160737494_160737670_160737752_160738669_160738791_160738934_160739287_160740549_160740650_160740788_160740950_160741489_160741584_160741679_160741750_160743752_160743797_160744482_160744622_160745522_160745672_160745843_160745931_160746402_160746556_160746719_160746835_160746922_160747027_160747177
transcript_80938.known	chr2	-	3547	4	FSM	ENSMUSG00000050700.12	ENSMUST00000057169.5	3547	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	5.55777733351102	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAAGGTGTTTTCTTCACT	NA	False	NA	NA	False	ATTAAA	-14	NA	160754248	160748357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_160751237_160751526_160751751_160752661_160752785_160753927
transcript_80939.known	chr2	-	3396	4	FSM	ENSMUSG00000050700.12	ENSMUST00000109454.8	3396	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	4.64279609239471	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTTTTCTTCACTA	NA	False	NA	NA	False	ATTAAA	-15	NA	160754237	160748356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_160751096_160751526_160751751_160752661_160752785_160753927
transcript_80944.known	chr2	-	10515	37	FSM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_8	18.6792285774042	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGGAAGTTCAAAA	NA	False	NA	-23	True	AATAAA	-24	NA	160950942	160788897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193_160803401_160803782_160803935_160807088_160808661_160809707_160809917_160811258_160811476_160812065_160812127_160819378_160819440_160821288_160821419_160823494_160823599_160824543_160824634_160824977_160825138_160825582_160825783_160826377_160826581_160830176_160830288_160832164_160832345_160834034_160834200_160850274_160850471_160854941_160855153_160856003_160856260_160859095_160859240_160859945_160860123_160861371_160861616_160862886_160863009_160867858_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
transcript_80946.known	chr2	-	3608	23	FSM	ENSMUSG00000057133.15	ENSMUST00000134178.8	3608	23	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_20	22.3005855461797	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGACAAAAAACCAGC	NA	False	NA	NA	False	NA	NA	NA	160950942	160825103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_160825138_160825582_160825783_160826377_160826581_160830176_160830288_160832164_160832345_160834034_160834200_160850274_160850471_160854941_160855153_160856003_160856260_160859095_160859240_160859945_160860123_160861371_160861616_160862886_160863009_160867858_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884050_160894307_160894826_160901838_160901895_160950908
transcript_8095.known	chr10	+	3471	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGCATGTGTTCTCTCT	1122	False	NA	14	True	NA	NA	NA	7668654	7698899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
transcript_80951.nic	chr2	-	735	4	ISM	ENSMUSG00000057133.15	ENSMUST00000125179.2	5051	5	-91	7048	-20	-7048	5prime_fragment	FALSE	canonical	3	60	junction_1	9.7410927974683	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAACCACCGTGGAGAGTT	NA	False	NA	NA	False	AAAAAG	-7	NA	160951015	160883998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_160884053_160894307_160894826_160901838_160901895_160950908
transcript_80952.nic	chr2	-	564	3	ISM	ENSMUSG00000057133.15	ENSMUST00000125179.2	5051	5	-91	17474	-20	-17474	5prime_fragment	FALSE	canonical	3	63	junction_1	9.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGAAAGACGGTGTCAAGA	NA	False	NA	NA	False	NA	NA	NA	160951015	160894424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_160894826_160901838_160901895_160950908
transcript_80954.known	chr2	+	1805	3	FSM	ENSMUSG00000109780.2	ENSMUST00000209874.2	1805	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTCCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	160951330	160956778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_160951749_160954023_160954240_160955607
transcript_80957.nnic	chr2	+	882	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-32	2653	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.2621655221252	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTTAAGAGTGCCTGTG	NA	False	NA	7	True	ATTAAA	-18	NA	162232700	162238518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_162232958_162233218_162233320_162236359_162236484_162238066_162238330_162238381
transcript_80962.nnic	chr2	+	758	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-32	2653	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	33.6386021641143	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTTAAGAGTGCCTGTG	NA	False	NA	7	True	ATTAAA	-18	NA	162232700	162238518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_162232958_162233218_162233320_162238066_162238330_162238381
transcript_80967.known	chr2	+	1666	7	FSM	ENSMUSG00000016921.15	ENSMUST00000017065.15	1666	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	407.538443994347	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTAAAGTATTGCA	NA	False	NA	NA	False	NA	NA	NA	162773481	162776946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_162773698_162773913_162774063_162774734_162775003_162775345_162775471_162775573_162775783_162776147_162776232_162776331
transcript_80973.known	chr2	+	3527	6	FSM	ENSMUSG00000016921.15	ENSMUST00000130411.7	3527	6	0	0	0	0	multi-exon	FALSE	canonical	3	865	junction_2	49.2097551304617	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTTCTTCATTTATTG	NA	False	NA	17	True	AATAAA	-18	NA	162773447	162779041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_162773698_162773913_162774063_162775345_162775471_162775573_162775783_162776147_162776232_162776331
transcript_80978.known	chr2	+	2897	5	FSM	ENSMUSG00000016921.15	ENSMUST00000193611.6	2897	5	0	0	0	0	multi-exon	FALSE	canonical	3	867	junction_4	48.9304353138208	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGATTGCCTTATTGAA	NA	False	NA	14	True	AATAAA	-12	NA	162773447	162777128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_162773698_162773913_162775471_162775573_162775783_162776147_162776232_162776331
transcript_80984.known	chr2	+	2248	13	FSM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	53.5787971122906	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859273	162888061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_80989.nic	chr2	+	2286	13	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	92.6614207148201	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859358	162888061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_80993.nnic	chr2	+	2004	12	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	106.160567612002	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859387	162888061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_162859454_162864294_162864420_162865269_162865358_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_8100.nic	chr10	+	1242	12	ISM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	-17	8386	-17	1875	5prime_fragment	FALSE	canonical	3	222	junction_9	27.2533264328025	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGCCACTGCTCCGAAGAA	1105	False	NA	NA	False	AGTAAA	-17	NA	7668637	7690513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427
transcript_81003.nic	chr2	+	786	8	ISM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	102	14871	-35	0	5prime_fragment	FALSE	canonical	3	222	junction_1	46.3434384321479	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGCTTTTCTCTTTCGTG	NA	False	NA	NA	False	GATAAA	-22	NA	162859375	162873190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100
transcript_81005.known	chr2	+	874	8	FSM	ENSMUSG00000017858.13	ENSMUST00000150396.3	874	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	102.945200401545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGCTTTTCTCTTTCGTG	NA	False	NA	NA	False	GATAAA	-22	NA	162859410	162873190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100
transcript_81018.nnic	chr2	+	1466	5	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9532	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_2	186.483745940497	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162873894	162888061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_162874156_162875154_162875224_162882546_162882635_162884610_162884720_162887122
transcript_8108.nic	chr10	+	1043	10	ISM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	-17	15769	-17	0	5prime_fragment	FALSE	canonical	3	222	junction_9	29.8477618740315	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGGAAAGGAAAAGGTAT	1105	False	NA	12	True	NA	NA	NA	7668637	7683130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034
transcript_8110.known	chr10	-	4228	8	FSM	ENSMUSG00000047712.9	ENSMUST00000061601.9	4228	8	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_7	3.52252228741084	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTTATTTTTTCTGTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	8394589	8080572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_8083435_8121666_8121825_8123852_8123951_8173819_8173974_8183171_8183252_8205831_8205988_8266651_8266696_8393913
transcript_81105.known	chr2	+	3651	14	FSM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	0	0	0	0	multi-exon	FALSE	canonical	3	2736	junction_8	179.963737307165	7376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	26	True	NA	NA	NA	162896606	162926608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_162896769_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_8116.nic	chr10	-	866	6	ISM	ENSMUSG00000015305.7	ENSMUST00000015449.6	7183	20	-186	64154	-186	27349	5prime_fragment	FALSE	canonical	3	4	junction_1	1.62480768092719	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATAATGAGACAGACTTC	597	False	NA	NA	False	AATAAA	-34	NA	8762000	8662136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_8662199_8665324_8665366_8690004_8690055_8690170_8690222_8726106_8726236_8761467
transcript_81171.nnic	chr2	+	2432	13	NIC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-218	975	combination_of_known_splicesites	FALSE	canonical	3	127	junction_7	831.247339177028	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162896388	162925594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_162896769_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_8118.known	chr10	-	1078	4	FSM	ENSMUSG00000015305.7	ENSMUST00000213032.2	1078	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAATTAAAAAAAAAAACAA	801	False	NA	NA	False	NA	NA	NA	8761796	8689485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_8690055_8690170_8690222_8726106_8726236_8761467
transcript_8119.known	chr10	-	7183	20	FSM	ENSMUSG00000015305.7	ENSMUST00000015449.6	7183	20	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	2.30139064306057	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGTTTCTCTGGTTGTT	783	False	NA	-9	True	AATAAA	-13	NA	8761814	8597982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_8601525_8603621_8603754_8605091_8606201_8609359_8609474_8615084_8615236_8615937_8616148_8617191_8617362_8618191_8618328_8620251_8620396_8621879_8621955_8626902_8627250_8632392_8632526_8656282_8656385_8659961_8660075_8662111_8662199_8665324_8665366_8690004_8690055_8690170_8690222_8726106_8726236_8761467
transcript_8120.known	chr10	-	8825	28	FSM	ENSMUSG00000019790.18	ENSMUST00000038213.14	8825	28	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_7	6.89744590012349	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGAAGCCCTCTTTTT	6402	False	NA	NA	False	AATAAA	-23	NA	9776427	9631290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_9636699_9638488_9638710_9642901_9643014_9644573_9644740_9645084_9645455_9646193_9646434_9653764_9653816_9659931_9659980_9660084_9660145_9665106_9665173_9673865_9674018_9675686_9675813_9684163_9684343_9684772_9684994_9687411_9687453_9687708_9687777_9688003_9688152_9691994_9692068_9693049_9693205_9701113_9701193_9711577_9711702_9713820_9713905_9717614_9717679_9718970_9719106_9740756_9740858_9742356_9742439_9774900_9774999_9776274
transcript_8123.known	chr10	-	2149	3	FSM	ENSMUSG00000019832.6	ENSMUST00000019974.5	2149	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTGTCACTTTATGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	10434009	10420745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_10422196_10426422_10426701_10433588
transcript_8127.known	chr10	+	9271	30	FSM	ENSMUSG00000090112.9	ENSMUST00000044053.13	9271	30	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_26	12.375515699268	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGTTCTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	11025173	11093339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_11025331_11027356_11028013_11030402_11030533_11032763_11032983_11035261_11035341_11036210_11036362_11037862_11037972_11038552_11038807_11040088_11040740_11042229_11042482_11043577_11043657_11045722_11045887_11045990_11046248_11047616_11047739_11054477_11054567_11057255_11057349_11059517_11059626_11061063_11061207_11062124_11062299_11062586_11062650_11063683_11063910_11065374_11065519_11066729_11066832_11068229_11068302_11069924_11070114_11080924_11081018_11082012_11082100_11082840_11083020_11088065_11088147_11089191
transcript_81273.known	chr2	-	822	1	FSM	ENSMUSG00000070708.6	ENSMUST00000094653.6	822	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCGGGCTGTGCTGGTTGT	2669	False	NA	-3	True	AATAAA	-17	NA	162929775	162928953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_162929000_162929800
transcript_81277.known	chr2	-	877	4	FSM	ENSMUSG00000035399.13	ENSMUST00000140454.8	877	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	178.417114276256	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGTCTGGCTCGCCTCG	NA	False	NA	NA	False	NA	NA	NA	163261064	163248471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_163249010_163253316_163253431_163257454_163257576_163260960
transcript_81278.known	chr2	-	1620	4	FSM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	31.0268700752536	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTATTGTGTGTTGTTTCTT	NA	False	NA	-4	True	NA	NA	NA	163261448	163247741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_163249010_163253316_163253431_163257454_163257576_163261331
transcript_81286.nnic	chr2	-	1606	3	NNC	ENSMUSG00000048486.7	novel	3967	2	NA	NA	-68	-1971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGGAAGGAAGGAATAAAA	NA	False	NA	NA	False	NA	NA	NA	163314617	163310269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_163310344_163310801_163312039_163314322
transcript_81287.known	chr2	-	3967	2	FSM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCCGGAGTTTGCTGTGT	NA	False	NA	-8	True	ATTAAA	-25	NA	163314549	163308298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_163312039_163314322
transcript_81293.known	chr2	+	4522	5	FSM	ENSMUSG00000017679.17	ENSMUST00000171696.8	4522	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	8.69985632065266	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCATTGTGGTTTTTATT	5691	False	NA	NA	False	AATAAA	-17	NA	163444233	163460932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163444335_163449128_163449595_163453678_163453873_163455654_163455766_163457282
transcript_81295.known	chr2	+	1999	5	FSM	ENSMUSG00000017679.17	ENSMUST00000109408.10	1999	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.8405728739343	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCATCTGGCCCTCCCT	5699	False	NA	NA	False	AATACA	-18	NA	163444241	163458420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163444335_163449131_163449595_163453678_163453873_163455654_163455766_163457282
transcript_81298.known	chr2	+	4289	4	FSM	ENSMUSG00000017679.17	ENSMUST00000109405.10	4289	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	11.1455023315337	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATTGTGGTTTTTATTC	5728	False	NA	NA	False	AATAAA	-18	NA	163444270	163460933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163444335_163449131_163449595_163455654_163455766_163457282
transcript_813.known	chr1	-	2487	7	FSM	ENSMUSG00000042182.17	ENSMUST00000062289.11	2487	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	6.36832439151427	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACTTTCTTATGGTTCAC	NA	False	NA	2	True	AATAAA	-23	NA	33946897	33891132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_33892449_33901734_33901855_33902822_33903016_33903603_33903825_33917340_33917519_33922521_33922730_33946646
transcript_81301.known	chr2	-	3683	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGATACCTTAGATTAAT	NA	False	NA	NA	False	AATAAA	-20	NA	163487051	163465191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
transcript_8131.nic	chr10	+	1415	7	ISM	ENSMUSG00000090112.9	ENSMUST00000159810.8	4171	21	28	25984	-18	7640	5prime_fragment	FALSE	canonical	3	73	junction_3	9.66810334151545	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGAAAAATAGAGAAATCCA	NA	False	NA	NA	False	NA	NA	NA	11025198	11037910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_11025331_11027356_11028013_11030402_11030533_11032763_11032983_11035261_11035341_11036210_11036362_11037862
transcript_81311.known	chr2	+	640	5	FSM	ENSMUSG00000035268.15	ENSMUST00000099105.9	640	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	187.314408148439	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCCACGGTGCCCAGGT	8619	False	NA	NA	False	NA	NA	NA	163500334	163567608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163500413_163501069_163501156_163545405_163545476_163563047_163563222_163567376
transcript_81312.known	chr2	+	1036	4	FSM	ENSMUSG00000035268.15	ENSMUST00000064703.13	1036	4	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	29.6348143611905	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTATGATCTTTTCTTT	8603	False	NA	10	True	AATAAA	-20	NA	163500318	163568074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163500413_163545405_163545476_163563047_163563222_163567376
transcript_81313.known	chr2	+	762	4	FSM	ENSMUSG00000035268.15	ENSMUST00000126182.8	762	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	178.258239641258	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCCACCTGGACAGGGACT	8681	False	NA	NA	False	GGGGCT	-30	NA	163500396	163567711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163500580_163545405_163545476_163563047_163563222_163567376
transcript_81314.known	chr2	+	983	3	FSM	ENSMUSG00000035268.15	ENSMUST00000164399.8	983	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	157.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGATCTTTTCTTTTAAC	8590	False	NA	14	True	AATAAA	-24	NA	163500305	163568078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163500413_163563047_163563222_163567376
transcript_81315.known	chr2	+	2808	3	FSM	ENSMUSG00000035268.15	ENSMUST00000147385.8	2808	3	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	34	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAATTAAAAAGC	8590	False	NA	NA	False	NA	NA	NA	163500305	163565678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163500413_163545405_163545476_163563047
transcript_81316.known	chr2	-	1688	12	FSM	ENSMUSG00000017697.4	ENSMUST00000017841.4	1688	12	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	12.1526108476007	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGGGTGTTTTGCCTGCT	NA	False	NA	NA	False	TTTAAA	-20	NA	163592159	163568503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_163568969_163569463_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163580082_163580145_163591978
transcript_81318.known	chr2	-	4962	6	FSM	ENSMUSG00000035226.6	ENSMUST00000044734.3	4962	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.26491106406735	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCTCTTGCTTTACTC	NA	False	NA	NA	False	ATTAAA	-22	NA	163760603	163701670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_163706042_163706785_163706926_163707372_163707475_163707711_163707825_163721013_163721153_163760506
transcript_8132.known	chr10	+	3028	2	FSM	ENSMUSG00000090112.9	ENSMUST00000161858.2	3028	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAGAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	11025216	11030270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_11025331_11027356
transcript_81321.known	chr2	+	3013	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	21	True	AATAAA	-16	NA	163836879	163860508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
transcript_81334.known	chr2	+	5232	11	FSM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_9	12.953763931769	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCCCCTTTCTTCACA	NA	False	NA	18	True	AATAAA	-18	NA	163916057	163997444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888_163960047_163993592
transcript_81336.nic	chr2	+	1317	10	ISM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	-31	37492	-31	-337	5prime_fragment	FALSE	canonical	3	214	junction_9	13.5819415328763	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAATCAGATCAACAGCT	NA	False	NA	NA	False	AAAAAG	-5	NA	163916026	163959952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888
transcript_81341.known	chr2	-	2302	7	FSM	ENSMUSG00000018322.11	ENSMUST00000018466.4	2302	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	196.655155030322	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5948	False	NA	-5	True	ATTAAA	-16	NA	163913022	163895459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912386
transcript_81342.known	chr2	-	1923	7	FSM	ENSMUSG00000018322.11	ENSMUST00000109384.10	1923	7	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	35.0606617165164	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5881	False	NA	-5	True	ATTAAA	-16	NA	163913089	163895459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
transcript_81347.known	chr2	-	2712	4	FSM	ENSMUSG00000040164.4	ENSMUST00000045196.4	2712	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTGGTCATGCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	164013033	164005538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164006936_164009731_164010778_164010997_164011180_164012946
transcript_81348.known	chr2	-	488	3	FSM	ENSMUSG00000051769.3	ENSMUST00000063251.3	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	2.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTATGTAATAACTGTTT	NA	False	NA	NA	False	ATTAAA	-38	NA	164042050	164040782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164040933_164041577_164041737_164041871
transcript_81349.known	chr2	-	2304	11	FSM	ENSMUSG00000016995.18	ENSMUST00000103103.10	2304	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.458257569495584	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTTTGTGGCTATTGCTA	9756	False	NA	NA	False	NA	NA	NA	164246534	164231312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164231635_164231712_164231821_164234761_164234915_164235015_164235430_164238644_164238768_164238861_164238985_164239083_164239207_164241651_164241775_164242447_164243018_164243761_164243883_164246410
transcript_81350.known	chr2	-	2458	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTCAGTTTTATTTTTG	NA	False	NA	47	True	AATAAA	-24	NA	164285106	164266166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
transcript_81355.known	chr2	+	2001	6	FSM	ENSMUSG00000045503.17	ENSMUST00000109352.8	2001	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	142.338469852672	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGCTTGTACTTAAGTC	8618	False	NA	NA	False	CATAAA	-18	NA	164298895	164307432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164298950_164299888_164300018_164302682_164303041_164303212_164303450_164305220_164305289_164306277
transcript_81359.known	chr2	+	1658	4	FSM	ENSMUSG00000017734.16	ENSMUST00000069385.15	1658	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	164328374	164333195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164328608_164330161_164330309_164330487_164330626_164332055
transcript_81365.nnic	chr2	+	2504	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-9	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	51.0299476342623	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTCGTTGCTTCCTTCCT	5103	False	NA	5	True	AATAAA	-14	NA	164339430	164350219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349447_164349511
transcript_81368.nnic	chr2	+	2344	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-9	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	51.0299476342623	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTCGTTGCTTCCTTCCT	5103	False	NA	5	True	AATAAA	-14	NA	164339430	164350219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349543_164349767
transcript_81371.known	chr2	+	2562	12	FSM	ENSMUSG00000017721.16	ENSMUST00000103101.11	2562	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_9	44.392501786631	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5112	False	NA	7	True	AATAAA	-16	NA	164339439	164350221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194
transcript_8138.known	chr10	+	5060	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_2	70.5	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAATTTTTGTTTTGTTTT	7592	False	NA	NA	False	AATAAA	-25	NA	11157073	11173796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_11157245_11165263_11167317_11170960
transcript_81380.known	chr2	+	1712	9	FSM	ENSMUSG00000017721.16	ENSMUST00000117066.8	1712	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	35.1212186576719	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCACTGTTAATCATAAA	5127	False	NA	NA	False	ATTAAA	-24	NA	164339454	164345040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397
transcript_81393.nnic	chr2	+	721	4	NIC	ENSMUSG00000017723.12	novel	849	5	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	229.843908386153	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	97	False	NA	26	True	AATAAA	-32	NA	164404482	164410430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_164404725_164405976_164406133_164407711_164407859_164410254
transcript_81395.known	chr2	+	429	3	FSM	ENSMUSG00000017723.12	ENSMUST00000109344.9	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	240.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	233	False	NA	26	True	AATAAA	-32	NA	164404618	164410430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164404725_164407711_164407859_164410254
transcript_81397.known	chr2	+	849	5	FSM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	0	0	0	0	multi-exon	FALSE	canonical	3	478	junction_3	30.4251129825347	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	113	False	NA	26	True	AATAAA	-32	NA	164404498	164410430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
transcript_81398.known	chr2	+	558	4	FSM	ENSMUSG00000017723.12	ENSMUST00000109345.9	558	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	240.807438054189	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164404725_164405227_164405372_164407711_164407859_164410254
transcript_81399.known	chr2	+	459	2	FSM	ENSMUSG00000070529.8	ENSMUST00000094344.6	459	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACTCTTAATAATCACTG	-7	True	NA	NA	False	AATAAA	-22	NA	164497965	164499288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164498119_164498982
transcript_81400.known	chr2	+	443	4	FSM	ENSMUSG00000074593.12	ENSMUST00000103097.10	443	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.65685424949238	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTTAGAATTCAAAATT	NA	False	NA	NA	False	AATAAA	-16	NA	164557224	164559988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164557395_164557965_164557975_164558914_164559085_164559894
transcript_81403.known	chr2	+	1664	13	FSM	ENSMUSG00000017299.14	ENSMUST00000017443.14	1664	13	0	0	0	0	multi-exon	FALSE	canonical	3	563	junction_10	65.6144039064594	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTGTTTTTGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	164587902	164610527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164588079_164588626_164588698_164589382_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
transcript_81413.nic	chr2	+	947	8	ISM	ENSMUSG00000017299.14	ENSMUST00000109327.4	656	9	-62	2001	-14	0	5prime_fragment	FALSE	canonical	3	592	junction_6	60.090408076973	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTGTGTTGTGTTCAGT	NA	False	NA	13	True	NA	NA	NA	164587888	164601479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_164588079_164588626_164588698_164589382_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171
transcript_81417.known	chr2	+	476	4	FSM	ENSMUSG00000017299.14	ENSMUST00000109326.10	476	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	341.432602752318	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGAGCACTTGTTGCTCT	NA	False	NA	NA	False	AATAAA	-22	NA	164587933	164593314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164588079_164588626_164588698_164589382_164589480_164593151
transcript_81418.known	chr2	+	967	6	FSM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	43.6458474542539	2573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164614423
transcript_81419.known	chr2	+	2191	6	FSM	ENSMUSG00000001403.14	ENSMUST00000001439.7	2191	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	668.177940372174	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTGGCTTTGGTGTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	164611822	164620742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164619109
transcript_8142.known	chr10	+	2492	3	FSM	ENSMUSG00000047648.14	ENSMUST00000070300.5	2492	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	373	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGATTGTCACTATGTA	7849	False	NA	NA	False	ATTAAA	-15	NA	11157330	11171262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_11157468_11165263_11167317_11170960
transcript_81434.known	chr2	-	1152	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	0	0	0	0	multi-exon	TRUE	canonical	3	284	junction_4	26.9250812440743	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
transcript_81436.known	chr2	-	1017	5	FSM	ENSMUSG00000017307.17	ENSMUST00000134611.4	1017	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	121.847240428333	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGACCTTTAATAGAACTA	8167	False	NA	2	True	AATAAA	-22	NA	164646801	164634684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646609
transcript_81437.known	chr2	+	1825	3	FSM	ENSMUSG00000050373.14	ENSMUST00000172577.8	1825	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	7.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGTGCTTTGCCTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	164627910	164634972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164628245_164628617_164628769_164633632
transcript_81438.known	chr2	+	2590	3	FSM	ENSMUSG00000050373.14	ENSMUST00000056181.7	2590	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGAGTCTGGGTT	NA	False	NA	NA	False	TATAAA	-22	NA	164627910	164635730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164628245_164628617_164628776_164633632
transcript_81440.known	chr2	+	1243	2	FSM	ENSMUSG00000050373.14	ENSMUST00000152471.2	1243	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	164627936	164629552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164628245_164628617
transcript_81442.nnic	chr2	+	2901	3	NNC	ENSMUSG00000045822.5	novel	2708	2	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACGTTTGTGTTTTTTGA	3065	False	NA	18	True	AATAAA	-18	NA	164647019	164664046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_164647352_164654713_164654913_164661676
transcript_81446.known	chr2	+	2708	2	FSM	ENSMUSG00000045822.5	ENSMUST00000052107.5	2708	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTGTTTTTTGAGACG	3063	False	NA	22	True	AATAAA	-22	NA	164647017	164664050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164647352_164661676
transcript_81447.known	chr2	+	2705	2	FSM	ENSMUSG00000017764.3	ENSMUST00000017908.3	2705	2	0	0	0	0	multi-exon	FALSE	canonical	3	571	junction_1	0	828	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTCTTGTCTGGTTTA	8527	False	NA	16	True	AATAAA	-19	NA	164664605	164668791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164665121_164666601
transcript_8146.nic	chr10	+	2519	2	ISM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	-51	6236	-51	-3702	5prime_fragment	FALSE	canonical	3	887	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCACAGTGACTGCATC	7541	False	NA	NA	False	NA	NA	NA	11157022	11167560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_11157245_11165263
transcript_81468.known	chr2	-	1014	2	FSM	ENSMUSG00000039873.5	ENSMUST00000042775.5	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGGAGGGTCTCCTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	164675376	164672651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164672908_164674618
transcript_81470.known	chr2	-	1809	16	FSM	ENSMUSG00000017754.14	ENSMUST00000059954.14	1809	16	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_15	32.6696597268271	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699631	164681437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
transcript_81471.known	chr2	-	2226	15	FSM	ENSMUSG00000017754.14	ENSMUST00000109316.8	2226	15	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_14	23.0625812315366	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699462	164681437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
transcript_81473.known	chr2	-	4587	28	FSM	ENSMUSG00000039834.18	ENSMUST00000041361.14	4587	28	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_13	19.1818958999235	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTTTGTATATGTGCTA	NA	False	NA	0	True	AATAAA	-25	NA	164753677	164733801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164734212_164734299_164734382_164734460_164734527_164734606_164734691_164734797_164734873_164735165_164735270_164735392_164735536_164735620_164735764_164736444_164736820_164736897_164737010_164737907_164738168_164739908_164740004_164740103_164740198_164741176_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164742420_164742440_164743337_164743451_164744127_164744306_164744415_164744657_164746760_164746908_164749347_164749495_164749572_164749879_164750074_164750153_164751125_164751364_164752541_164752793_164753436
transcript_81476.nic	chr2	-	4766	27	ISM	ENSMUSG00000039834.18	ENSMUST00000041361.14	4587	28	465	0	465	0	3prime_fragment	TRUE	canonical	3	65	junction_13	19.3627776871841	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTTTGTATATGTGCTA	NA	False	NA	0	True	AATAAA	-25	NA	164753212	164733801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_164734212_164734299_164734382_164734460_164734527_164734606_164734691_164734797_164734873_164735165_164735270_164735392_164735536_164735620_164735764_164736444_164736820_164736897_164737010_164737907_164738168_164739908_164740004_164740103_164740198_164741176_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164742420_164742440_164743337_164743451_164744127_164744306_164744415_164744657_164746760_164746908_164749347_164749495_164749572_164749879_164750074_164750153_164751125_164751364_164752541
transcript_8148.known	chr10	+	3287	4	FSM	ENSMUSG00000055493.5	ENSMUST00000069106.5	3287	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAACATAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	11219147	11335388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_11219513_11266554_11266730_11324385_11324628_11332883
transcript_8149.known	chr10	+	613	1	FSM	ENSMUSG00000045455.9	ENSMUST00000052902.9	613	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAACTGTATATGGGACT	NA	False	NA	NA	False	GATAAA	-17	NA	11484966	11485579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_11485000_11485600
transcript_81491.known	chr2	+	5780	17	FSM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_4	60.7051017213545	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGGCCACAGACATGAA	5949	False	NA	9	True	AATAAA	-16	NA	164721276	164736374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518_164732695_164732796
transcript_81495.nic	chr2	+	2792	16	ISM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	11	3079	11	-3079	intron_retention	FALSE	canonical	3	171	junction_4	62.5944264469467	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGTGAGGGTCTTGGG	5960	False	NA	15	True	AATACA	-13	NA	164721287	164733295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518
transcript_8150.known	chr10	-	5751	25	FSM	ENSMUSG00000019820.12	ENSMUST00000219003.2	5751	25	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_24	17.9698339045066	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGATGTTTGGCTGT	NA	False	NA	-3	True	AATAAA	-19	NA	12424623	12257933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12423690
transcript_81506.known	chr2	+	611	2	FSM	ENSMUSG00000039849.7	ENSMUST00000145327.2	611	2	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGCACGCAAAGAAAATCT	5896	False	NA	44	True	NA	NA	NA	164721223	164725119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164721410_164724694
transcript_81508.known	chr2	+	1127	2	FSM	ENSMUSG00000085436.2	ENSMUST00000129364.2	1127	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTTTTTTGGATACGGT	7240	False	NA	NA	False	NA	NA	NA	164753273	164761873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164753671_164761143
transcript_81509.known	chr2	+	383	2	FSM	ENSMUSG00000039849.7	ENSMUST00000122810.2	383	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAAATTACCAGGCATCT	6644	False	NA	-45	True	GATAAA	-20	NA	164721971	164725030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164722019_164724694
transcript_81514.known	chr2	-	3179	8	FSM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	0	0	0	0	multi-exon	TRUE	canonical	3	73	junction_1	19.1790702249582	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGCTAATCTTTCTTGG	2982	False	NA	-6	True	ATTAAA	-15	NA	164876787	164842276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
transcript_81515.known	chr2	-	3117	8	FSM	ENSMUSG00000039804.16	ENSMUST00000122070.2	3117	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	35.3784207259344	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGACCTGTGCTAATCTT	3061	False	NA	-12	True	ATTAAA	-9	NA	164876708	164842282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164844092_164844535_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
transcript_81516.nic	chr2	-	3073	7	NIC	ENSMUSG00000039804.16	novel	3179	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_6	41.2812171439856	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTGTGCTAATCTTTCT	3018	False	NA	-9	True	ATTAAA	-12	NA	164876751	164842279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164876602
transcript_81523.known	chr2	+	2986	9	FSM	ENSMUSG00000017652.17	ENSMUST00000017799.12	2986	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	6.06217782649107	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAGAAGATTCATATAA	NA	False	NA	NA	False	NA	NA	NA	164897546	164914868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164897679_164904205_164904285_164904580_164904707_164904941_164905089_164905387_164905482_164908422_164908485_164911548_164911636_164911736_164911769_164912641
transcript_81526.known	chr2	+	668	8	FSM	ENSMUSG00000017652.17	ENSMUST00000081310.11	668	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.77630927178938	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATCCCCAGGAGATGGA	NA	False	NA	NA	False	NA	NA	NA	164897599	164912665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_164897679_164904205_164904285_164904580_164904707_164904941_164905089_164905387_164905482_164911548_164911636_164911736_164911769_164912641
transcript_81528.known	chr2	-	3702	12	FSM	ENSMUSG00000053166.15	ENSMUST00000065438.13	3702	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	8.81114996106431	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTATCCTTGTGGTTACT	NA	False	NA	-5	True	NA	NA	NA	165076773	164953426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_164954614_164958059_164958312_164965435_164965554_164965641_164965764_164977103_164977241_164983973_164984228_164985561_164985756_164988524_164988693_164999169_164999290_165012542_165012838_165022823_165023380_165076474
transcript_81529.nic	chr2	-	2360	7	ISM	ENSMUSG00000053166.15	ENSMUST00000065438.13	3702	12	90922	0	37528	0	3prime_fragment	FALSE	canonical	2	10	junction_5	5.30461015427985	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTATCCTTGTGGTTACT	NA	False	NA	-5	True	NA	NA	NA	164985851	164953426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_164954614_164958059_164958312_164965435_164965554_164965641_164965764_164977103_164977241_164983973_164984228_164985561
transcript_81536.known	chr2	-	2008	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109300.9	2008	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	47.7596864973064	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5660	False	NA	-34	True	AATAAA	-18	NA	165129789	165118473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
transcript_8154.known	chr10	-	2468	18	FSM	ENSMUSG00000019820.12	ENSMUST00000219660.2	2468	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_17	5.15570702027304	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAGGTAAAATATACAAT	NA	False	NA	NA	False	AATATA	-36	NA	12744025	12596568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_12596687_12601954_12602125_12603476_12603657_12604454_12604563_12609642_12609745_12610841_12610962_12612695_12612847_12613828_12614011_12615110_12615315_12619788_12619950_12620975_12621092_12623658_12623832_12625774_12625868_12626208_12626287_12627238_12627332_12641014_12641077_12737311_12737480_12743836
transcript_81540.known	chr2	-	1843	11	FSM	ENSMUSG00000017664.17	ENSMUST00000017808.14	1843	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	88.3464204141854	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5702	False	NA	-34	True	AATAAA	-18	NA	165129747	165118473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125328_165125447_165125521_165129703
transcript_81541.nic	chr2	-	1888	11	NIC	ENSMUSG00000017664.17	novel	2008	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_9	81.3242891146304	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5660	False	NA	-34	True	AATAAA	-18	NA	165129789	165118473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125328_165125447_165125524_165129703
transcript_81547.known	chr2	-	1892	10	FSM	ENSMUSG00000017664.17	ENSMUST00000132270.8	1892	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	86.0462121030551	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5705	False	NA	-34	True	AATAAA	-18	NA	165129744	165118473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124783_165125168_165125524_165129703
transcript_81548.known	chr2	-	1991	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109298.8	1991	10	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_9	78.2020175926143	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5774	False	NA	-34	True	AATAAA	-18	NA	165129675	165118473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129603
transcript_8155.nic	chr10	-	3165	18	ISM	ENSMUSG00000019820.12	ENSMUST00000218635.2	11801	75	-275	337445	-275	0	5prime_fragment	FALSE	canonical	2	9	junction_16	3.78487245697539	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAGGTAAAATATACAAT	NA	False	NA	NA	False	AATATA	-36	NA	12745384	12596568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_12596687_12601954_12602125_12603476_12603657_12604454_12604563_12609642_12609745_12610841_12610962_12612695_12612847_12613828_12614011_12615110_12615315_12619788_12619950_12620975_12621092_12623658_12623832_12625774_12625868_12626208_12626287_12627238_12627332_12641014_12641077_12737311_12737480_12744498
transcript_8157.nic	chr10	-	3156	18	ISM	ENSMUSG00000019820.12	ENSMUST00000218635.2	11801	75	-275	337454	-275	0	5prime_fragment	FALSE	canonical	2	9	junction_16	3.78487245697539	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATTGAAGGTAAA	NA	False	NA	NA	False	AATATA	-27	NA	12745384	12596577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_12596687_12601954_12602125_12603476_12603657_12604454_12604563_12609642_12609745_12610841_12610962_12612695_12612847_12613828_12614011_12615110_12615315_12619788_12619950_12620975_12621092_12623658_12623832_12625774_12625868_12626208_12626287_12627238_12627332_12641014_12641077_12737311_12737480_12744498
transcript_81577.known	chr2	-	3502	22	FSM	ENSMUSG00000017670.17	ENSMUST00000074046.13	3502	22	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_12	97.9880829442692	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCTTCCTATCCACACC	NA	False	NA	-17	True	AATAAA	-15	NA	165168399	165131074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165145585_165145622_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
transcript_8158.known	chr10	-	2272	17	FSM	ENSMUSG00000019820.12	ENSMUST00000217899.2	2272	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	5.11126207506522	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATTGAAGGTAAA	NA	False	NA	NA	False	AATATA	-27	NA	12689359	12596577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_12596687_12601954_12602125_12603476_12603657_12604454_12604563_12609642_12609745_12610841_12610962_12612695_12612847_12613828_12614011_12615110_12615315_12619788_12619950_12620975_12621092_12623658_12623832_12625774_12625868_12626208_12626287_12627238_12627332_12641014_12641077_12689189
transcript_81586.known	chr2	-	3466	21	FSM	ENSMUSG00000017670.17	ENSMUST00000094329.11	3466	21	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_20	30.5759300757965	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCTTCCTATCCACACC	NA	False	NA	-17	True	AATAAA	-15	NA	165168399	165131074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
transcript_81596.known	chr2	-	3052	20	FSM	ENSMUSG00000017670.17	ENSMUST00000103088.10	3052	20	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_19	27.8000378644195	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGCGTGCTTCCTGCTCG	NA	False	NA	NA	False	ACTAAA	-15	NA	165168399	165133031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
transcript_816.nic	chr1	-	1096	3	ISM	ENSMUSG00000042182.17	ENSMUST00000062289.11	2487	7	57	25692	9	-3986	5prime_fragment	FALSE	canonical	3	39	junction_2	1	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTTGATGTTTTCCTT	NA	False	NA	NA	False	ATTAAA	-19	NA	33946840	33916824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_33917519_33922521_33922730_33946646
transcript_81600.known	chr2	-	8205	5	FSM	ENSMUSG00000017667.10	ENSMUST00000103084.4	8205	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	3.24037034920393	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTCTTGGCTTCTTT	4540	False	NA	0	True	AATAAA	-39	NA	165230179	165216183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165223807_165224610_165224704_165225158_165225286_165228845_165228909_165229880
transcript_81605.known	chr2	-	1880	2	FSM	ENSMUSG00000039725.7	ENSMUST00000039007.7	1880	2	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_1	0	365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCGGAGACCTGGAACA	NA	False	NA	-17	True	NA	NA	NA	165335244	165332029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165333632_165334966
transcript_81606.known	chr2	+	2447	16	FSM	ENSMUSG00000017897.19	ENSMUST00000088132.13	2447	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.44040069569642	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTACTGGCTTCAGTG	NA	False	NA	91	True	AATAAA	-12	NA	165436951	165613639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_165437185_165506705_165506807_165524756_165524803_165527468_165527612_165529538_165529656_165555424_165555493_165557870_165558049_165566593_165566737_165573472_165573557_165596360_165596451_165603823_165603883_165605616_165605778_165608134_165608250_165608956_165609079_165611144_165611246_165612953
transcript_81623.nnic	chr2	-	3278	20	NIC	ENSMUSG00000039671.19	novel	5232	23	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	58	junction_8	168.338186851215	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATATATATACATATATAT	NA	False	NA	NA	False	TATAAA	-25	NA	165740948	165627201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
transcript_81650.nnic	chr2	-	2337	13	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	33	2	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_11	216.363168846579	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAATGGTTGTGTTTAAT	NA	False	NA	35	True	AATAGA	-15	NA	165740903	165669046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165694787_165694800_165717624_165717696_165740835
transcript_81664.nnic	chr2	-	2392	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-34	2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	164.953988074912	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAATGGTTGTGTTTAAT	NA	False	NA	35	True	AATAGA	-15	NA	165740970	165669046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
transcript_81670.nnic	chr2	-	2422	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-123	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	164.953988074912	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	-24	True	AATAAA	-18	NA	165741059	165669105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
transcript_81672.nnic	chr2	-	2435	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-61	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	166.859667865936	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	-24	True	AATAAA	-18	NA	165740997	165669105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
transcript_81686.nnic	chr2	-	2263	11	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	329	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	191.662959384436	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	-24	True	AATAAA	-18	NA	165703596	165669105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165703460
transcript_8169.known	chr10	+	452	3	FSM	ENSMUSG00000019817.19	ENSMUST00000141944.8	452	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	37	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTCTCCCTGTCCAAGG	3096	False	NA	NA	False	NA	NA	NA	12966617	12988528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_12966765_12981598_12981638_12988262
transcript_81690.nnic	chr2	-	2323	11	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	344	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	193.282720386485	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	-24	True	AATAAA	-18	NA	165703581	165669105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165703460
transcript_81701.known	chr2	-	629	6	FSM	ENSMUSG00000039671.19	ENSMUST00000136842.2	629	6	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_5	120.234104978579	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATATATTTTCCACCCCA	NA	False	NA	NA	False	NA	NA	NA	165740936	165681960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
transcript_81710.nnic	chr2	+	2066	3	Antisense	novelGene_ENSMUSG00000039671.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_2	9	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAAGGCCCATCAAAG	NA	False	NA	NA	False	AAAACA	-11	NA	165652125	165660331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr2_+_165652330_165657273_165657453_165658648
transcript_81715.nnic	chr2	+	3262	2	Antisense	novelGene_ENSMUSG00000039671.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_1	0	63	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAAGGCCCATCAAAG	NA	False	NA	NA	False	AAAACA	-11	NA	165652125	165660331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr2_+_165652330_165657273
transcript_8172.known	chr10	-	2297	11	FSM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_7	42.5845042239545	527	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAGGTTTTGATGAGAT	NA	False	NA	NA	False	ATTAAA	-16	NA	13068912	13053883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
transcript_81725.known	chr2	+	7531	23	FSM	ENSMUSG00000027678.18	ENSMUST00000088095.6	7531	23	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_19	38.5042929880864	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTCCGCATGCTTTTCCT	NA	False	NA	31	True	AATAAA	-19	NA	165834556	165915162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910248_165910469_165911124_165911300_165911730_165911873_165912051
transcript_81728.known	chr2	+	5757	23	FSM	ENSMUSG00000027678.18	ENSMUST00000109252.8	5757	23	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_19	38.1274504699546	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCCCACTCATCATTTTA	NA	False	NA	16	True	ATTAAA	-22	NA	165834555	165913390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910251_165910469_165911124_165911300_165911730_165911873_165912051
transcript_81744.known	chr2	-	3808	22	FSM	ENSMUSG00000006800.15	ENSMUST00000146497.9	3808	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	257.404161765755	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTTGGGACTTTTTTGC	NA	False	NA	-10	True	NA	NA	NA	165997583	165915833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165983633_165983687_165997422
transcript_81752.nic	chr2	-	3847	21	NIC	ENSMUSG00000006800.15	novel	3808	22	NA	NA	-124	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_20	182.354352840836	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTTGGGACTTTTTTGC	NA	False	NA	-10	True	NA	NA	NA	165996850	165915833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996597
transcript_81753.nnic	chr2	-	3782	21	NNC	ENSMUSG00000006800.15	novel	3808	22	NA	NA	-116	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_20	191.779143808705	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTTGGGACTTTTTTGC	NA	False	NA	-10	True	NA	NA	NA	165996842	165915833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996654
transcript_81754.known	chr2	-	3927	21	FSM	ENSMUSG00000006800.15	ENSMUST00000088086.4	3927	21	0	0	0	0	multi-exon	FALSE	canonical	3	542	junction_20	98.8976617519343	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCTATCTTGGGACTT	NA	False	NA	-16	True	NA	NA	NA	165997205	165915839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996866
transcript_81755.nnic	chr2	-	4042	21	NNC	ENSMUSG00000006800.15	novel	3808	22	NA	NA	138	0	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_20	188.49392563157	132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTTGGGACTTTTTTGC	NA	False	NA	-10	True	NA	NA	NA	165997445	165915833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996997
transcript_81757.known	chr2	-	4580	21	FSM	ENSMUSG00000006800.15	ENSMUST00000109249.9	4580	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	203.951336107416	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTTCTCAGTGGTGT	NA	False	NA	NA	False	TATAAA	-14	NA	165997583	165915008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165997422
transcript_81798.nic	chr2	+	2044	12	ISM	ENSMUSG00000027678.18	ENSMUST00000109252.8	5757	23	-55	16412	-55	2660	5prime_fragment	FALSE	canonical	3	215	junction_9	21.0076727423479	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGGAGAGCAGTGGGGAG	NA	False	NA	NA	False	AAAAAG	-4	NA	165834500	165896978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690
transcript_81811.nic	chr2	-	3244	7	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	47	0	intron_retention	FALSE	canonical	0	0	junction_6	13.2748718344933	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCATTCTTGACTTT	NA	False	NA	-6	True	AATAAA	-44	NA	166349944	166341960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349381_166349480_166349807
transcript_81814.nnic	chr2	-	3142	6	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	51	0	intron_retention	FALSE	canonical	3	12	junction_5	9.90757286120067	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCATTCTTGACTTT	NA	False	NA	-6	True	AATAAA	-44	NA	166349940	166341960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349807
transcript_81817.known	chr2	-	1095	5	FSM	ENSMUSG00000085682.3	ENSMUST00000228863.2	1095	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	16.5755844542508	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCATTCTTGACTTT	NA	False	NA	-6	True	AATAAA	-44	NA	166351094	166341960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166351065
transcript_81822.known	chr2	-	6533	40	FSM	ENSMUSG00000039621.14	ENSMUST00000036719.12	6533	40	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_37	7.40390997863488	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGGTGTGGCCTGCTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	166555752	166408261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_166409771_166410971_166411040_166411265_166411369_166412254_166412428_166413449_166413517_166414858_166414974_166415074_166415219_166416040_166416141_166417465_166417687_166418583_166418626_166419797_166419927_166422136_166422228_166422336_166422420_166423826_166423916_166425029_166425243_166426951_166427226_166427652_166427864_166428442_166428605_166428966_166429155_166430873_166430980_166431429_166431567_166432353_166432440_166434120_166434270_166434715_166434809_166435679_166435823_166438205_166438279_166441525_166441602_166443446_166443497_166443643_166443748_166444735_166444837_166451657_166451806_166453547_166453698_166455061_166455181_166459752_166459887_166463091_166463254_166475285_166475388_166480234_166480340_166486668_166486792_166488893_166488966_166555434
transcript_81825.known	chr2	-	437	3	FSM	ENSMUSG00000039621.14	ENSMUST00000140624.2	437	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTACACAGATCCCTGGC	NA	False	NA	NA	False	NA	NA	NA	166555522	166486514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_166486792_166488893_166488966_166555434
transcript_81826.known	chr2	+	4426	2	FSM	ENSMUSG00000042854.10	ENSMUST00000151826.2	4426	2	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTGTGTAGTAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	166635686	166641425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_166635989_166637301
transcript_81828.known	chr2	+	8770	39	FSM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	0	0	0	0	multi-exon	TRUE	canonical	3	156	junction_4	19.7687636593819	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTCCCAGTGTCATCAT	NA	False	NA	NA	False	AATAAA	-16	NA	166647507	166739972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_166647756_166668846_166668878_166669461_166669586_166676390_166676538_166677532_166677713_166678121_166678378_166684604_166684674_166687369_166687522_166690786_166690918_166692962_166693198_166693874_166693975_166695174_166695315_166696824_166696934_166698326_166698511_166701182_166701295_166701705_166701912_166702233_166702319_166702444_166702617_166703503_166703656_166705476_166705606_166706612_166706772_166707599_166707748_166708831_166708932_166709065_166709107_166709207_166709378_166710811_166710964_166712129_166712303_166713378_166713540_166715495_166715627_166715782_166715913_166718412_166718549_166720190_166720330_166720437_166720493_166723091_166723207_166727698_166727830_166732188_166732358_166733686_166733826_166735420_166735539_166736531
transcript_8183.known	chr10	-	8556	13	FSM	ENSMUSG00000062866.17	ENSMUST00000105545.12	8556	13	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_9	15.1657508881031	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTAGTCCATTACTGTTT	NA	False	NA	-13	True	AATAAA	-18	NA	13350156	13083460	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13131053_13131066_13137509_13137669_13142716_13142798_13167538_13167707_13349799
transcript_81838.known	chr2	+	3641	25	FSM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_12	67.9214722226255	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTTTTTATTGTTTTC	NA	False	NA	37	True	CATAAA	-33	NA	166747978	166788309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
transcript_81842.known	chr2	-	2860	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109236.9	2860	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	83.3006106552479	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTGTTAATTTATT	NA	False	NA	NA	False	AATAAA	-13	NA	166838219	166790192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795266_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
transcript_81844.known	chr2	-	2976	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	58.6274129884562	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGTCTTTTTCCAATT	NA	False	NA	-21	True	AATAAA	-9	NA	166838185	166790066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
transcript_81875.known	chr2	+	2714	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGTTGTCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	166857112	166876867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
transcript_81876.known	chr2	+	2151	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_7	28.1497453499193	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATAGTATTATTTCCCAT	NA	False	NA	NA	False	NA	NA	NA	166857229	166867733	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
transcript_81877.known	chr2	-	7218	14	FSM	ENSMUSG00000039501.15	ENSMUST00000048988.14	7218	14	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	5.9245752350676	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTCATCTCTTATCTGT	960	False	NA	NA	False	AATAAA	-18	NA	166904935	166877712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_166881084_166881696_166881793_166882078_166882190_166883613_166883760_166883969_166884125_166884467_166884608_166885915_166886164_166888811_166888927_166889460_166889611_166890352_166890502_166892233_166892366_166897073_166898862_166901951_166902063_166904429
transcript_81879.known	chr2	+	738	5	FSM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	47.5105251496971	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166904853	166907782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353_166907401_166907606
transcript_81880.known	chr2	+	659	4	FSM	ENSMUSG00000074578.15	ENSMUST00000143587.3	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.8351063543137	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905138	166907782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353
transcript_81881.known	chr2	+	525	4	FSM	ENSMUSG00000074578.15	ENSMUST00000125841.3	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.7783412186483	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCAGCCCCACAAGGCT	NA	False	NA	NA	False	AATACA	-21	NA	166905142	166907642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907401_166907606
transcript_81885.known	chr2	+	560	2	FSM	ENSMUSG00000074578.15	ENSMUST00000145859.4	560	2	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATTTGCAGGCTAGTG	NA	False	NA	NA	False	AATGAA	-12	NA	166905152	166906050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_166905218_166905555
transcript_81886.nnic	chr2	+	2488	2	Fusion	ENSMUSG00002075888.1_ENSMUSG00000074578.15	novel	731	2	NA	NA	-57	-6	intron_retention	TRUE	canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTATCTGCTGTGTCTTG	NA	False	NA	29	True	AATAAA	-39	NA	166905081	166907776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr2_+_166906362_166906568
transcript_81887.known	chr2	-	2107	10	FSM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	29.1890390386528	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCGCAGTAGGTAGCAGG	5247	False	NA	NA	False	NA	NA	NA	167082524	167044826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167082263
transcript_81893.known	chr2	-	11153	2	FSM	ENSMUSG00000050556.10	ENSMUST00000207917.2	11153	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGCTGGTGTTTGGCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	167030738	166937888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_166948280_167029976
transcript_81894.known	chr2	-	4210	9	FSM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_3	15.1244834622542	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTAGTCGTCTCTCTG	NA	False	NA	-1	True	AGTAAA	-23	NA	167191103	167140363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167143404_167143929_167144032_167146915_167147039_167147579_167147768_167148510_167148628_167149463_167149589_167151142_167151257_167155006_167155142_167190837
transcript_81896.known	chr2	+	4521	17	FSM	ENSMUSG00000039463.15	ENSMUST00000047815.13	4521	17	0	0	0	0	multi-exon	FALSE	non_canonical	2	49	junction_9	20.9574531790005	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTGTGTCACGTGTT	NA	False	NA	7	True	AATAAA	-20	NA	167263631	167318920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167288421_167288457_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
transcript_81905.nic	chr2	+	4513	16	NIC	ENSMUSG00000039463.15	novel	4521	17	NA	NA	-29	0	combination_of_known_junctions	TRUE	non_canonical	2	23	junction_6	29.1803586909643	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGTTGTGTCACGTG	NA	False	NA	5	True	AATAAA	-18	NA	167263602	167318918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
transcript_81907.known	chr2	+	2055	16	FSM	ENSMUSG00000039463.15	ENSMUST00000109218.7	2055	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	38.4532038832773	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCATGGCAGGGTTCAG	NA	False	NA	NA	False	AATGAA	-12	NA	167263640	167316556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167263686_167266038_167266218_167283048_167283108_167285368_167285453_167287425_167287528_167288421_167288457_167293126_167293271_167299246_167299386_167301580_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
transcript_81918.known	chr2	+	2059	2	FSM	ENSMUSG00000039463.15	ENSMUST00000150326.2	2059	2	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAAAACCCATGAG	NA	False	NA	NA	False	ACTAAA	-7	NA	167263642	167268054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167263686_167266038
transcript_81920.known	chr2	+	2502	6	FSM	ENSMUSG00000006418.18	ENSMUST00000078050.7	2502	6	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_2	31.1088411870323	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAATGTTTTCATTTAA	NA	False	NA	24	True	AATAAA	-25	NA	167345008	167358093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
transcript_81924.known	chr2	+	1985	5	FSM	ENSMUSG00000006418.18	ENSMUST00000127939.2	1985	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	262.348051260153	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGTAAGCTGCAATGTT	NA	False	NA	15	True	AATAAA	-16	NA	167345365	167358084	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167345522_167352795_167352903_167353131_167353247_167354436_167354545_167356585
transcript_81928.known	chr2	-	4012	3	FSM	ENSMUSG00000047030.16	ENSMUST00000057627.16	4012	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	1	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCGAAGATTTTTTTC	4582	False	NA	NA	False	ATTAAA	-17	NA	167334807	167323052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167326500_167327077_167327514_167334678
transcript_81930.known	chr2	+	1621	3	FSM	ENSMUSG00000042821.8	ENSMUST00000052631.8	1621	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	2	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCAGTGTTGGGGTGGG	4755	False	NA	NA	False	AATAAA	-24	NA	167380114	167384734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167380292_167380590_167381119_167383818
transcript_81934.known	chr2	-	2329	6	FSM	ENSMUSG00000090213.2	ENSMUST00000006587.7	2329	6	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_2	14.6205335059977	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTATTATATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	167503476	167484527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167486103_167486683_167486897_167487951_167488097_167488887_167488980_167496527_167496648_167503292
transcript_81936.known	chr2	-	836	5	FSM	ENSMUSG00000078923.11	ENSMUST00000130284.2	836	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	1151.48477519245	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGTTGTGCTGTGTAAC	9446	False	NA	NA	False	NA	NA	NA	167473887	167450854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167470988_167471209_167473859
transcript_81937.known	chr2	-	924	5	FSM	ENSMUSG00000078923.11	ENSMUST00000151365.8	924	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	1117.10764924424	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTCTGCCTTTGCCCGCCC	9426	False	NA	NA	False	NA	NA	NA	167473907	167450685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167471089_167471209_167473859
transcript_81943.known	chr2	-	2041	4	FSM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	0	0	0	0	multi-exon	FALSE	canonical	3	2167	junction_3	78.0555357848927	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCAGGCTGTGCCCTTCTT	9318	False	NA	NA	False	AATAAA	-19	NA	167474015	167449557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167473859
transcript_81946.known	chr2	-	1586	3	FSM	ENSMUSG00000078923.11	ENSMUST00000060645.13	1586	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	1070	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGTGGTTTTATTTTAA	9441	False	NA	NA	False	AATAAA	-22	NA	167473892	167449763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167451168_167459748_167459898_167473859
transcript_81947.known	chr2	-	725	2	FSM	ENSMUSG00000090213.2	ENSMUST00000125874.2	725	2	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGTAGGTCCTCCGTGA	NA	False	NA	NA	False	NA	NA	NA	167503474	167496104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167496648_167503292
transcript_81948.known	chr2	+	1504	1	FSM	ENSMUSG00000056501.4	ENSMUST00000070642.4	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGGGCAGTAGTTGGC	NA	False	NA	32	True	AATAAA	-26	NA	167530834	167532338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167530800_167532300
transcript_81952.known	chr2	+	4292	10	FSM	ENSMUSG00000027540.14	ENSMUST00000126839.8	4292	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	47.9021636666927	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCGTGATGTGCTTGCCT	1105	False	NA	10	True	AATAAA	-16	NA	167774291	167821305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167774477_167793875_167794000_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
transcript_81955.known	chr2	+	4213	9	FSM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_4	11.7997616501351	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCGTGATGTGCTTGCCT	1060	False	NA	10	True	AATAAA	-16	NA	167774246	167821305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
transcript_81957.nic	chr2	+	2624	8	ISM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	24	2460	-21	2188	intron_retention	FALSE	canonical	3	103	junction_4	7.75386671149252	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTACAACACATTGTTGT	1084	False	NA	NA	False	NA	NA	NA	167774270	167818845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228
transcript_81967.known	chr2	+	3399	3	FSM	ENSMUSG00000044641.8	ENSMUST00000052125.7	3399	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	5.5	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTGTTTGAAATTACA	NA	False	NA	NA	False	AATAAA	-22	NA	167922923	167943123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_167923280_167929261_167929485_167940303
transcript_81969.known	chr2	-	1309	2	FSM	ENSMUSG00000087648.2	ENSMUST00000129713.2	1309	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATTAGCTACTTTATT	7129	False	NA	-4	True	NA	NA	NA	167996433	167994522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_167995672_167996273
transcript_8197.known	chr10	-	2735	12	FSM	ENSMUSG00000062866.17	ENSMUST00000105543.9	2735	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	13.2378121085581	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTATCTCCAAAGTCAG	9902	False	NA	-6	True	AATAAA	-21	NA	13200033	13089138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13137509_13137669_13142716_13142798_13167538_13167707_13199807
transcript_81971.known	chr2	-	5288	12	FSM	ENSMUSG00000093752.2	ENSMUST00000138667.2	5288	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	157.884464505636	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGCTTTTATTACACAC	NA	False	NA	-1	True	AATAAA	-25	NA	168072284	168022905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168027093_168029486_168029580_168031201_168031315_168052350_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_81973.known	chr2	-	2293	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAATGTTATCGAATTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	168072299	168050967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_81974.known	chr2	-	1076	9	FSM	ENSMUSG00000078919.11	ENSMUST00000109193.8	1076	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	149.583118616373	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072511	168052200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072308
transcript_8198.nic	chr10	-	2983	12	NIC	ENSMUSG00000062866.17	novel	2735	12	NA	NA	-117	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_8	9.0160554677945	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTATCTCCAAAGTCAG	NA	False	NA	-6	True	AATAAA	-21	NA	13350273	13089138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13137509_13137669_13142716_13142798_13167538_13167707_13349799
transcript_81985.known	chr2	-	722	8	FSM	ENSMUSG00000078919.11	ENSMUST00000099072.11	722	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	159.537469209063	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCACATAAAAGAAATGAT	NA	False	NA	-40	True	AATGAA	-39	NA	168072248	168052461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_81987.nic	chr2	-	587	8	ISM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	15	2420	-2	-84	5prime_fragment	FALSE	canonical	3	450	junction_2	9.26481163833769	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTTCTACAGAAATTAAT	NA	False	NA	NA	False	CATAAA	-32	NA	168072284	168053387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_81989.known	chr2	-	435	6	FSM	ENSMUSG00000078919.11	ENSMUST00000142482.8	435	6	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_1	5.93295878967653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGAGCTTCTCATTAT	NA	False	NA	NA	False	AATAGA	-13	NA	168072150	168059536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_81993.known	chr2	+	1973	1	FSM	ENSMUSG00000074576.5	ENSMUST00000099071.5	1973	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	112	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAGTCTTAATTCTACT	NA	False	NA	NA	False	AAAAAG	-2	NA	168072541	168074514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_168072500_168074500
transcript_81994.known	chr2	-	4089	3	FSM	ENSMUSG00000074575.5	ENSMUST00000109191.2	4089	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTACCCTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	168123052	168102036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168105071_168110388_168111189_168122797
transcript_81996.known	chr2	-	2310	7	FSM	ENSMUSG00000027544.17	ENSMUST00000029057.13	2310	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.10554159678513	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCATGTGTCATGCTGA	NA	False	NA	NA	False	NA	NA	NA	168432111	168361017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168361473_168365157_168365299_168376837_168377011_168378122_168378326_168409058_168409231_168412517_168413554_168431981
transcript_81997.known	chr2	-	2174	3	FSM	ENSMUSG00000027544.17	ENSMUST00000138546.2	2174	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	168432285	168408396	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168409231_168412517_168413554_168431981
transcript_82006.known	chr2	-	3729	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109175.9	3729	28	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_27	47.3339708993171	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	NA	False	NA	-23	True	GATAAA	-16	NA	168576259	168476357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168575940
transcript_82008.known	chr2	-	3668	28	FSM	ENSMUSG00000027546.16	ENSMUST00000178504.8	3668	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	60.2704012099035	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGATAAAAGTCTCTGTC	6459	False	NA	-48	True	NA	NA	NA	168583884	168476382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168476829_168479420_168479621_168480985_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168583601
transcript_82009.known	chr2	-	3456	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109177.8	3456	28	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_27	57.8025587882503	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	6290	False	NA	-23	True	GATAAA	-16	NA	168584053	168476357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168584007
transcript_82013.nnic	chr2	-	3101	25	NNC	ENSMUSG00000027546.16	novel	3729	28	NA	NA	17615	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_24	61.6206472431657	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	NA	False	NA	-23	True	GATAAA	-16	NA	168537218	168476357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168537159
transcript_82021.nic	chr2	-	2629	16	NIC	ENSMUSG00000027546.16	novel	3729	28	NA	NA	-97	0	combination_of_known_junctions	TRUE	canonical	3	19	junction_15	72.489508819476	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	2904	False	NA	-23	True	GATAAA	-16	NA	168512363	168476357	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168511919
transcript_82026.known	chr2	-	2484	14	FSM	ENSMUSG00000027546.16	ENSMUST00000140188.8	2484	14	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_13	32.0469330382763	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGTGTGTTTATTATTA	6623	False	NA	NA	False	AAGAAA	-18	NA	168583720	168508998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168583601
transcript_82048.nic	chr2	-	6083	4	NIC	ENSMUSG00000027547.18	novel	5073	4	NA	NA	636	0	intron_retention	FALSE	canonical	3	69	junction_3	260.140133176119	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGCTTGTGTGTATGCT	NA	False	NA	-17	True	AATAAA	-22	NA	168608313	168590251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_168592381_168594373_168594661_168596353_168598721_168607013
transcript_82050.known	chr2	-	5073	4	FSM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	46.1808040928985	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGCTTGTGTGTATGCT	NA	False	NA	-17	True	AATAAA	-22	NA	168609121	168590251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168592381_168594373_168594661_168596353_168598721_168608831
transcript_82053.known	chr2	-	3741	4	FSM	ENSMUSG00000027547.18	ENSMUST00000103074.2	3741	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	261.72037665332	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGCTTGTGTGTATGCT	NA	False	NA	-17	True	AATAAA	-22	NA	168609121	168590251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168592381_168594373_168594661_168597685_168598721_168608831
transcript_82064.known	chr2	-	773	2	FSM	ENSMUSG00000027547.18	ENSMUST00000137536.2	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGGGCCGACACGCTGAA	NA	False	NA	NA	False	NA	NA	NA	168607166	168598100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168598721_168607013
transcript_82067.known	chr2	-	2848	9	FSM	ENSMUSG00000027551.16	ENSMUST00000109162.9	2848	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	271.408824469655	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGTGAGCGTCATTTCC	NA	False	NA	NA	False	AATAAA	-22	NA	168797507	168735250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_82070.known	chr2	-	2438	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGTATTGTATAGTTT	NA	False	NA	0	True	AATAAA	-29	NA	168797192	168767280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_82071.known	chr2	-	1009	6	FSM	ENSMUSG00000027551.16	ENSMUST00000109161.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	185.215982031789	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACTGTTGTTACCATT	NA	False	NA	-1	True	TATAAA	-19	NA	168797209	168776732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168776860_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_82072.nic	chr2	-	2193	5	NIC	ENSMUSG00000027551.16	novel	2848	9	NA	NA	-125	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	9.69535971483266	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGTGAGCGTCATTTCC	NA	False	NA	NA	False	AATAAA	-22	NA	168754678	168735250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168754153
transcript_82076.known	chr2	-	1352	2	FSM	ENSMUSG00000027551.16	ENSMUST00000136242.2	1352	2	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAATGTACAGAAT	NA	False	NA	NA	False	NA	NA	NA	168797186	168792494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_168793699_168797038
transcript_82080.known	chr2	-	5685	6	FSM	ENSMUSG00000052056.15	ENSMUST00000063710.13	5685	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	10.6695829346793	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCGTGGTTTTCATT	NA	False	NA	0	True	AATATA	-20	NA	169973140	169950562	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_169952576_169954399_169954535_169955980_169957493_169958061_169958179_169960938_169962674_169972967
transcript_82081.known	chr2	-	688	4	FSM	ENSMUSG00000013523.14	ENSMUST00000133673.8	688	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	32.9983164553722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGTAGATCGAGGTGTA	NA	False	NA	NA	False	AATGAA	-26	NA	170199033	170189864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_170190069_170191101_170191384_170198167_170198234_170198897
transcript_82082.known	chr2	-	594	3	FSM	ENSMUSG00000013523.14	ENSMUST00000156657.8	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	33.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTATTATTTACGTCTCT	4201	False	NA	NA	False	AATGAA	-40	NA	170191660	170189850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_170190069_170191101_170191384_170191566
transcript_82083.known	chr2	-	371	3	FSM	ENSMUSG00000013523.14	ENSMUST00000152461.2	371	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	23.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAATCCAAGTAAACAAA	4146	False	NA	NA	False	NA	NA	NA	170191715	170190008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_170190069_170191101_170191384_170191686
transcript_82085.known	chr2	+	935	4	FSM	ENSMUSG00000052033.14	ENSMUST00000063682.12	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	676	junction_1	80.8469060769936	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTAGTATCCGACAGAGAT	3842	False	NA	68	True	AAGAAA	-1	NA	170353154	170361043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_170353390_170357658_170357767_170358469_170358611_170360592
transcript_82087.known	chr2	+	666	4	FSM	ENSMUSG00000052033.14	ENSMUST00000170167.8	666	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	391.486341467433	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCGTCCATCCAGCGGGT	4167	False	NA	NA	False	NA	NA	NA	170353479	170360631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_170353858_170357658_170357767_170358469_170358611_170360592
transcript_82088.known	chr2	+	736	4	FSM	ENSMUSG00000052033.14	ENSMUST00000109148.8	736	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	387.259029017472	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTAGTATCCGACAGAGAT	4127	False	NA	68	True	AAGAAA	-1	NA	170353439	170361043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_170353476_170357658_170357767_170358469_170358611_170360592
transcript_82090.known	chr2	+	452	4	FSM	ENSMUSG00000052033.14	ENSMUST00000136839.2	452	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	373.855884295302	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATTTCCCTTCTCCAAA	4052	False	NA	10	True	AATAAA	-20	NA	170353364	170360782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_170353390_170357658_170357767_170358481_170358611_170360592
transcript_82091.known	chr2	+	1768	8	FSM	ENSMUSG00000027560.5	ENSMUST00000029075.5	1768	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	9.45666809339164	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTAGTTCTTTCTGCAC	NA	False	NA	14	True	AATAAA	-15	NA	170573726	170721689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_170574109_170642769_170642878_170671759_170671875_170671988_170672109_170674801_170674992_170683339_170683476_170712730_170712852_170721093
transcript_82092.known	chr2	+	3617	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	7.5	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGTCTGCCGTCTGGTAA	NA	False	NA	NA	False	AATAAA	-17	NA	172187484	172197669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172187768_172193374_172193545_172194505
transcript_82099.known	chr2	-	1905	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_8	405.788969169937	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	False	NA	-8	True	AATATA	-16	NA	172212426	172198115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
transcript_82100.known	chr2	-	1862	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTGGGTAATCATTTGA	NA	False	NA	-2	True	AATATA	-22	NA	172212455	172198109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
transcript_82115.nic	chr2	+	2005	6	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	-39	-1367	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	102.721760109531	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTTCCTCCTTCTT	NA	False	NA	15	True	AATAAA	-15	NA	172212561	172223001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
transcript_82116.nic	chr2	+	3372	6	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	102.721760109531	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGACGTAAAGGTAGTTT	NA	False	NA	13	True	AATAAA	-20	NA	172212561	172224368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
transcript_82118.known	chr2	+	3451	6	FSM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_1	74.6527963307471	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGACGTAAAGGTAGTTT	NA	False	NA	13	True	AATAAA	-20	NA	172212653	172224368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
transcript_82124.nic	chr2	+	4230	5	ISM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	207	1367	207	-1367	intron_retention	FALSE	canonical	3	206	junction_1	83.4056353012193	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTTCCTCCTTCTT	NA	False	NA	15	True	AATAAA	-15	NA	172212860	172223001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535
transcript_82127.known	chr2	+	2173	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGGTTGGTTTTGCTT	NA	False	NA	16	True	AATAAA	-16	NA	172282475	172311828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
transcript_82129.known	chr2	+	944	8	FSM	ENSMUSG00000027502.12	ENSMUST00000109132.10	944	8	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_4	20.1382973562355	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTACTGTTGTGCAAG	NA	False	NA	NA	False	ATTAAA	-31	NA	172282521	172308574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348
transcript_82135.nic	chr2	+	716	6	ISM	ENSMUSG00000027502.12	ENSMUST00000109132.10	944	8	-57	3365	-11	-3365	5prime_fragment	FALSE	canonical	3	407	junction_4	21.811923344813	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTGCCCCAGAGCCTGC	NA	False	NA	12	True	NA	NA	NA	172282464	172305209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096
transcript_82136.known	chr2	-	171	1	FSM	ENSMUSG00000081344.6	ENSMUST00000121320.2	171	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGACCTTGAATGGATTCGA	NA	False	NA	NA	False	NA	NA	NA	172351611	172351440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_172351400_172351600
transcript_82141.nnic	chr2	+	2678	7	NNC	ENSMUSG00000028640.12	novel	2838	7	NA	NA	-3950	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	238.451078141129	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAATCTCTGAAAGTCTG	NA	False	NA	10	True	AATAAA	-12	NA	172387562	172400527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_172387708_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_82147.known	chr2	+	2838	7	FSM	ENSMUSG00000028640.12	ENSMUST00000030391.9	2838	7	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_1	51.676611946046	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTCTGACCCTTTTT	NA	False	NA	25	True	AATAAA	-27	NA	172391512	172400542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_82158.known	chr2	+	2724	7	FSM	ENSMUSG00000028640.12	ENSMUST00000128406.8	2724	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	241.022589997056	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAATCTCTGAAAGTCTG	NA	False	NA	10	True	AATAAA	-12	NA	172392572	172400527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172392764_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_82159.known	chr2	+	1959	7	FSM	ENSMUSG00000028640.12	ENSMUST00000122982.2	1959	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	239.920415045397	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATAGTATTTATC	NA	False	NA	NA	False	ACTAAA	-11	NA	172392683	172399746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172392891_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_82161.known	chr2	+	2776	7	FSM	ENSMUSG00000028640.12	ENSMUST00000170744.2	2776	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	218.277091992927	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCTGGTTCTGACCCTT	NA	False	NA	22	True	AATAAA	-24	NA	172392910	172400539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172393142_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_82171.nnic	chr2	-	3768	8	NNC	ENSMUSG00000008999.8	novel	3670	7	NA	NA	-345	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	35.366304729277	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGACCCATGTGTGTAT	NA	False	NA	-8	True	AATAAA	-21	NA	172782459	172709813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_172710901_172711138_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
transcript_82172.known	chr2	-	3670	7	FSM	ENSMUSG00000008999.8	ENSMUST00000009143.8	3670	7	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_3	13.8734358477712	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTATTTGTGTCTT	NA	False	NA	1	True	AATAAA	-30	NA	172782114	172709804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
transcript_82180.known	chr2	+	1742	12	FSM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	0	0	0	0	multi-exon	FALSE	canonical	3	1013	junction_10	106.078950794457	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATGTTCCAAGTTTCTC	NA	False	NA	85	True	NA	NA	NA	172841909	172857532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172842170_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
transcript_82218.known	chr2	+	1768	4	FSM	ENSMUSG00000027510.18	ENSMUST00000029014.16	1768	4	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_1	63.0766729200793	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAAGGTGGTTTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	172863694	172876518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172864064_172864584_172864709_172865119_172865175_172875298
transcript_82221.known	chr2	+	440	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173997.2	440	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	361.719351001421	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCTGCCGTGCCCCAAG	NA	False	NA	NA	False	NA	NA	NA	172864230	172875502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172864288_172864584_172864709_172865119_172865175_172875298
transcript_82222.known	chr2	+	620	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173720.2	620	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	365.954763446097	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTACCCATATGCTGC	NA	False	NA	NA	False	NA	NA	NA	172863903	172875443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172864200_172864584_172864709_172865119_172865175_172875298
transcript_82223.known	chr2	+	936	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173878.8	936	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	369.719713657071	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCTTCTGCAGCCCTG	NA	False	NA	NA	False	NA	NA	NA	172863691	172875706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172864041_172864584_172864709_172865119_172865175_172875298
transcript_82224.known	chr2	+	2281	3	FSM	ENSMUSG00000027510.18	ENSMUST00000155512.8	2281	3	0	0	0	0	multi-exon	FALSE	canonical	3	757	junction_2	26	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAAGGTGGTTTGAGGTT	NA	False	NA	NA	False	AATAAA	-17	NA	172863705	172876521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_172864709_172865119_172865175_172875298
transcript_82228.known	chr2	+	646	4	FSM	ENSMUSG00000027518.4	ENSMUST00000029023.4	646	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGTATGTTTGTTGA	NA	False	NA	NA	False	AATAGA	-17	NA	173364378	173370294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_173364525_173367796_173367879_173369637_173369740_173369978
transcript_8223.known	chr10	+	2007	8	FSM	ENSMUSG00000019810.16	ENSMUST00000060212.13	2007	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_7	35.0731015021425	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTCCCTCATATTCA	NA	False	NA	38	True	AATGAA	-24	NA	13376744	13391287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390619_13390860
transcript_82245.known	chr2	+	7155	7	FSM	ENSMUSG00000027519.11	ENSMUST00000029024.10	7155	7	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_6	19.3512847692917	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTGGCATTCATTACG	NA	False	NA	27	True	AATAAA	-40	NA	173501552	173549136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_173501935_173503224_173503305_173529939_173530022_173536902_173536975_173537051_173537159_173537682_173537793_173542814
transcript_82247.known	chr2	+	7045	6	FSM	ENSMUSG00000027519.11	ENSMUST00000142820.8	7045	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	72.9191332916128	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCGTGTTTCAGCCT	NA	False	NA	-1	True	AATAAA	-12	NA	173501552	173549108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_173501935_173503224_173503305_173536902_173536975_173537051_173537159_173537682_173537793_173542814
transcript_82248.known	chr2	+	7032	6	FSM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	5.74804314527997	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGATTCCGTGTATAATT	NA	False	NA	NA	False	AATAAA	-25	NA	173579303	173626132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_173579544_173603909_173604063_173613313_173613418_173616186_173616268_173617904_173618082_173619855
transcript_82270.known	chr2	+	3865	9	FSM	ENSMUSG00000027522.16	ENSMUST00000087908.10	3865	9	0	0	0	0	multi-exon	TRUE	canonical	1	10	junction_1	35.0633355515416	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCATTCCTAGTATTAA	NA	False	NA	126	True	AATAAA	-24	NA	173918714	173941564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_173918983_173926438_173926451_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
transcript_82272.known	chr2	+	3731	9	FSM	ENSMUSG00000027522.16	ENSMUST00000044638.13	3731	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	40.7076083183476	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAGCATTCCTAGTATTA	NA	False	NA	125	True	AATAAA	-23	NA	173918850	173941563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_173918983_173919130_173919146_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
transcript_8228.known	chr10	+	5741	7	FSM	ENSMUSG00000019810.16	ENSMUST00000121465.3	5741	7	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_3	15.7418409201578	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACTAGCCCTTGACCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	13376744	13394779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450
transcript_82282.known	chr2	+	2467	12	FSM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_9	24.2330284822489	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTACCTGTGATTCCTGG	NA	False	NA	NA	False	CATAAA	-14	NA	173952141	173964863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962461_173962740_173962918_173963271_173963383_173963883
transcript_82287.nic	chr2	+	2433	11	NIC	ENSMUSG00000039263.17	novel	2467	12	NA	NA	-54	0	intron_retention	FALSE	canonical	3	237	junction_8	19.4907670449369	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCTCCGCTCACTTTT	NA	False	NA	8	True	ATTAAA	-17	NA	173952087	173964495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962918_173963271_173963383_173963883
transcript_82302.known	chr2	+	3903	13	FSM	ENSMUSG00000027523.21	ENSMUST00000087871.11	3903	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	240.957277794679	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174169560	174188537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_174169735_174169900_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_82312.nic	chr2	+	1680	12	NIC	ENSMUSG00000027523.21	novel	3903	13	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	236.631666212588	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174169456	174188537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_174169735_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_82313.known	chr2	+	1716	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	0	0	0	0	multi-exon	FALSE	canonical	3	678	junction_2	91.1435159288239	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAATAAAAATTAA	NA	False	NA	-17	True	NA	NA	NA	174171881	174188505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_82315.known	chr2	+	1789	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109085.8	1789	11	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	262.324150622851	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174171798	174188537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_174172228_174176004_174176078_174183442_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_82321.known	chr2	+	1695	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109084.8	1695	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	245.35078968693	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174171889	174188537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_174172228_174176004_174176078_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_82325.known	chr2	-	2248	5	FSM	ENSMUSG00000086537.8	ENSMUST00000151472.8	2248	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.27760839478607	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAATTGAGTCACTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	174137229	174123029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_174124296_174125048_174125200_174126252_174126459_174127932_174128191_174136862
transcript_82327.known	chr2	+	2279	15	FSM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_12	51.3083913254758	1123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257596	174269295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
transcript_8234.known	chr10	-	2129	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTTAGCCATTAATTT	NA	False	NA	NA	False	AATAAA	-34	NA	13428883	13399859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
transcript_8235.known	chr10	-	1961	12	FSM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	40.2069029063706	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATAGCTTTGTTT	NA	False	NA	NA	False	AATAAA	-8	NA	13428864	13399885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428692
transcript_82356.nic	chr2	+	2900	13	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-21	0	intron_retention	FALSE	canonical	3	502	junction_10	48.356890810813	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257622	174269295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
transcript_82387.known	chr2	-	1441	6	FSM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_4	13.5292276202302	606	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTACTTTATTTACA	5329	False	NA	0	True	AGTAAA	-17	NA	174280832	174269285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
transcript_82391.known	chr2	-	421	3	FSM	ENSMUSG00000016252.8	ENSMUST00000016396.8	421	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1326.5	570	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTTGTTTCTGTTCTA	NA	False	NA	-4	True	AATAAA	-22	NA	174305898	174302864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_174303015_174304292_174304423_174305757
transcript_82393.known	chr2	-	1553	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCAGCTCTTCCCAT	NA	False	NA	-4	True	AATAAA	-45	NA	174314874	174306859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
transcript_82398.nnic	chr2	+	1585	5	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5485	457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	510.300401724318	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174846548	174859862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_174846644_174854703_174854899_174855220_174855276_174858430_174858558_174858749
transcript_82399.nic	chr2	+	504	5	NIC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-66	660	combination_of_known_junctions	FALSE	canonical	3	233	junction_1	354.600743795046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGACTGTAACCAATGTG	NA	False	NA	NA	False	NA	NA	NA	174851967	174860065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749_174858811_174859951
transcript_82401.nnic	chr2	+	1445	4	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5540	457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	495.211963596286	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174846493	174859862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_174846644_174855220_174855276_174858430_174858558_174858749
transcript_82404.known	chr2	+	919	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	395.454450249611	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACATACCTTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	174852033	174859405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749
transcript_82406.nnic	chr2	+	1362	3	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5512	457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	600.5	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174846521	174859862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_174846644_174858430_174858558_174858749
transcript_82407.nic	chr2	+	1375	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-132	1179	-54	457	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174851979	174859862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_174852115_174858430_174858558_174858749
transcript_82408.known	chr2	-	4516	4	FSM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	16.3571255285137	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	-4	True	NA	NA	NA	175017664	175008047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_175012254_175013387_175013449_175013640_175013768_175017542
transcript_82409.known	chr2	-	1854	5	FSM	ENSMUSG00000078903.11	ENSMUST00000109058.9	1854	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	82.2936814099357	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	175048710	175036706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
transcript_8241.known	chr10	+	1466	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	288.190631353623	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCTGGTGTCATCCTTA	NA	False	NA	NA	False	NA	NA	NA	13428637	13439120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
transcript_82411.known	chr2	-	965	4	FSM	ENSMUSG00000078903.11	ENSMUST00000109055.2	965	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	81.8141525382715	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCACATACCTTTCACT	NA	False	NA	NA	False	NA	NA	NA	175048692	175038734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_175039399_175039599_175039727_175044851_175044907_175048573
transcript_82414.known	chr2	-	473	5	FSM	ENSMUSG00000078903.11	ENSMUST00000099028.10	473	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	90.9433202604787	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGCAATATTAAAAACTAAT	NA	False	NA	NA	False	NA	NA	NA	175048696	175032857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_175032965_175039337_175039399_175039599_175039727_175044851_175044907_175048573
transcript_82415.known	chr2	-	1198	4	FSM	ENSMUSG00000078897.11	ENSMUST00000152941.2	1198	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	107.953693776545	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTCTTCCTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	175277575	175265685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_175266617_175266821_175266949_175273972_175274028_175277490
transcript_82416.known	chr2	+	1271	3	FSM	ENSMUSG00000078896.12	ENSMUST00000109042.10	1271	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	42.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTCCCATTTCATT	NA	False	NA	NA	False	NA	NA	NA	175311777	175321130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_175311916_175319791_175319919_175320124
transcript_82420.known	chr2	-	624	1	FSM	ENSMUSG00000083481.5	ENSMUST00000118709.2	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACTCGTAGTGTAATA	8779	False	NA	NA	False	NA	NA	NA	175597399	175596775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_175596800_175597400
transcript_82421.known	chr2	+	599	6	FSM	ENSMUSG00000078887.11	ENSMUST00000147820.2	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	84.5846321739357	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175661037	175671684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_175661175_175664841_175664897_175666200_175666303_175670021_175670149_175670349_175670411_175671567
transcript_82423.known	chr2	+	1445	4	FSM	ENSMUSG00000078887.11	ENSMUST00000109011.8	1445	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	81.1432204329001	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATTAGATTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	175661011	175671449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349
transcript_82431.known	chr2	+	3823	5	FSM	ENSMUSG00000078894.10	ENSMUST00000099009.9	3823	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	24.8432586429397	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	3035	False	NA	NA	False	AATAAA	-25	NA	175968361	175982121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443_175977505_175978659
transcript_82432.known	chr2	+	1127	3	FSM	ENSMUSG00000089951.9	ENSMUST00000127687.8	1127	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	45	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTTCTTCCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	176115453	176124879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_176115528_176123621_176123749_176123953
transcript_82433.known	chr2	-	1458	4	FSM	ENSMUSG00000078880.11	ENSMUST00000119149.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	105.749179140497	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	176328136	176315986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_176317159_176317363_176317491_176324514_176324570_176328032
transcript_82434.known	chr2	+	1646	5	FSM	ENSMUSG00000078878.10	ENSMUST00000108981.9	1646	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	64.6006965906715	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	176400120	176413606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081_176411143_176412300
transcript_82435.known	chr2	+	1167	4	FSM	ENSMUSG00000078878.10	ENSMUST00000108980.9	1167	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	71.7696933871734	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTGCAAACACTGTGA	NA	False	NA	NA	False	NA	NA	NA	176400147	176411996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081
transcript_82438.known	chr2	-	3823	5	FSM	ENSMUSG00000074527.12	ENSMUST00000099007.3	3823	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	30.886890422961	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	NA	False	NA	NA	False	AATAAA	-25	NA	176619602	176605842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_176609305_176610459_176610521_176610725_176610853_176615991_176616047_176619484
transcript_82445.known	chr2	+	752	4	FSM	ENSMUSG00000078875.11	ENSMUST00000156844.8	752	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	49.7482551341139	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATGGTTTTGTGGAAA	NA	False	NA	NA	False	NA	NA	NA	176692769	176702306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806
transcript_82448.nnic	chr2	+	456	4	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-106	33922	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	117.565111982916	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTCCTCCCCAACTTGCT	NA	False	NA	NA	False	NA	NA	NA	176766006	176813062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_176766152_176776035_176776163_176776368_176776430_176812939
transcript_82449.nnic	chr2	-	494	6	NNC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-71442	682	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	123.980643650531	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176969656	176885959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176937155_176937186_176969547
transcript_82453.known	chr2	-	912	4	FSM	ENSMUSG00000078870.10	ENSMUST00000108964.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	114.822568435923	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGGGGCATTGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	176898214	176886641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_176887290_176887494_176887622_176894619_176894675_176898132
transcript_82454.nnic	chr2	-	1435	4	NNC	ENSMUSG00000078870.10	novel	912	4	NA	NA	-71448	455	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	137.950071483208	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTAGATTGCTCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	176969662	176886186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_176887290_176887494_176887622_176894619_176894675_176969512
transcript_82466.nnic	chr2	-	1247	4	Fusion	ENSMUSG00000083817.2_ENSMUSG00000078867.10	novel	2135	3	NA	NA	-46	-2240	multi-exon	FALSE	canonical	3	29	junction_2	139.104277432436	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTTGAGTTCTTCCTT	NA	False	NA	-5	True	NA	NA	NA	177090159	176919505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr2_-_176920428_176920629_176920757_177086489_177086545_177090016
transcript_82467.nnic	chr2	-	446	5	Fusion	ENSMUSG00000078868.4_ENSMUSG00000078869.3	novel	1050	3	NA	NA	-91	-843	multi-exon	FALSE	canonical	0	0	junction_3	219.014268941546	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCATGACTGTAACCAATG	NA	False	NA	-38	True	NA	NA	NA	177016191	176957289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr2_-_176957402_176958542_176958604_176958795_176958923_177012912_177012965_177016097
transcript_82469.nnic	chr2	-	1386	4	Fusion	ENSMUSG00000078868.4_ENSMUSG00000078869.3	novel	1050	3	NA	NA	-91	-1044	multi-exon	FALSE	canonical	0	0	junction_2	229.762679495363	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	-42	True	NA	NA	NA	177016191	176957490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr2_-_176958604_176958795_176958923_177012912_177012965_177016097
transcript_82470.nnic	chr2	-	1340	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5317	-1044	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_2	147.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	-42	True	NA	NA	NA	176964146	176957490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_176958604_176958795_176958923_176964046
transcript_82471.known	chr2	-	588	7	FSM	ENSMUSG00000078867.10	ENSMUST00000149689.2	588	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	128.500324253806	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090113	177079693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177085086_177085189_177086489_177086545_177090016
transcript_82473.nnic	chr2	-	539	6	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-53	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_2	99.4633600880244	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090166	177079693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
transcript_82478.known	chr2	-	1415	4	FSM	ENSMUSG00000078867.10	ENSMUST00000108955.2	1415	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	139.800651723167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_177081015_177081219_177081347_177086489_177086545_177090016
transcript_8248.known	chr10	-	1554	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13744724	13522797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
transcript_82487.nic	chr2	+	499	5	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-41	-304	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	35.4436171968946	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177189966	177200358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246
transcript_82490.nic	chr2	+	532	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-41	-1421	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGCAGATATGTAATTAT	NA	False	NA	NA	False	NA	NA	NA	177189966	177199241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
transcript_82498.nic	chr2	-	562	5	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-126	-978	combination_of_known_junctions	FALSE	canonical	3	253	junction_4	344.203700590217	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	2211	False	NA	NA	False	NA	NA	NA	177270129	177261974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
transcript_8250.known	chr10	-	1439	6	FSM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	33.5654584357193	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTTCAGAGAATGGCTG	NA	False	NA	NA	False	AATAAA	-17	NA	13744701	13528194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_13528756_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
transcript_82501.known	chr2	-	531	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108943.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	396.148400925153	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTAACAGATATGTTACTG	2337	False	NA	NA	False	NA	NA	NA	177270003	177263019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_177263288_177263479_177263607_177266761_177266817_177269922
transcript_82504.nic	chr2	-	1460	3	ISM	ENSMUSG00000078865.9	ENSMUST00000108943.2	531	4	3026	-849	3015	849	3prime_fragment	FALSE	canonical	3	782	junction_2	220	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAGAATTCATACAG	5363	False	NA	NA	False	NA	NA	NA	177266977	177262170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_177263288_177263479_177263607_177266761
transcript_82505.nic	chr2	-	1380	3	ISM	ENSMUSG00000078865.9	ENSMUST00000108945.8	1348	4	-66	1174	-55	849	5prime_fragment	FALSE	canonical	3	827	junction_2	197.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAGAATTCATACAG	2282	False	NA	NA	False	NA	NA	NA	177270058	177262170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_177263288_177263479_177263607_177269922
transcript_82515.known	chr2	+	744	6	FSM	ENSMUSG00000078864.11	ENSMUST00000148388.2	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	86.0497530501977	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAATGTGGTAAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	177401080	177411755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_177401169_177404638_177404694_177409531_177409569_177409836_177409964_177410168_177410230_177411379
transcript_82516.nnic	chr2	+	478	5	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1077	4	NA	NA	-20	-264	multi-exon	FALSE	canonical	3	49	junction_2	85.9200209497181	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177189987	177411491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr2_+_177190111_177404638_177404694_177409836_177409964_177410168_177410230_177411379
transcript_82524.nnic	chr2	+	448	4	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1074	3	NA	NA	-45	-264	multi-exon	FALSE	canonical	3	66	junction_1	90.6899479913108	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177189962	177411491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr2_+_177190111_177409836_177409964_177410168_177410230_177411379
transcript_82527.known	chr2	-	1372	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	29	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATTTTAAAAGAATTCA	NA	False	NA	-14	True	NA	NA	NA	177720269	177710282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_177711409_177711615_177711743_177720150
transcript_82528.known	chr2	+	2656	13	FSM	ENSMUSG00000027525.19	ENSMUST00000108916.8	2656	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.70579079087156	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTTTTTTTGTTGTTT	1698	False	NA	NA	False	AATAAA	-18	NA	177760971	177978284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_177761096_177897905_177898068_177901970_177902049_177911109_177911293_177920689_177920900_177924802_177924978_177925652_177925901_177944477_177944632_177969930_177969987_177973372_177973435_177974614_177974756_177975843_177975921_177977298
transcript_8253.known	chr10	-	617	5	FSM	ENSMUSG00000019806.14	ENSMUST00000105534.10	617	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	50.8742321809381	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCAAGTCTGAGAGGAGA	NA	False	NA	NA	False	AAAAAG	-21	NA	13744566	13523412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_13523451_13566267_13566384_13677591_13677694_13704986_13705143_13744361
transcript_82530.known	chr2	-	3267	1	FSM	ENSMUSG00000049999.5	ENSMUST00000058678.5	3267	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTGTGTGCTGTGGCCTC	NA	False	NA	NA	False	ATTAAA	-30	NA	178056265	178052998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_178053000_178056300
transcript_82531.known	chr2	+	4541	4	FSM	ENSMUSG00000070476.11	ENSMUST00000094251.11	4541	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGGTTTGATGTGATT	NA	False	NA	NA	False	ATTAAA	-17	NA	178056316	178066221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_178056502_178058424_178058537_178059298_178059385_178062063
transcript_82532.known	chr2	+	737	3	FSM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	6	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCTTGGTAATGACCCT	NA	False	NA	7	True	AATAAA	-22	NA	179056728	179058675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179056894_179057552_179057714_179058264
transcript_82537.known	chr2	+	6388	16	FSM	ENSMUSG00000000305.13	ENSMUST00000000314.13	6388	16	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_13	5.18802038889166	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTCTCCCGACTTGCTT	NA	False	NA	4	True	AATAAA	-16	NA	179084223	179541166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179084472_179086492_179086605_179422046_179422274_179439250_179439422_179484761_179484918_179489012_179489158_179501909_179502083_179515864_179516003_179523602_179523789_179527646_179527901_179528512_179528656_179530881_179531116_179532535_179532770_179534984_179535125_179535820_179535986_179537504
transcript_82541.nic	chr2	+	2729	10	NIC	ENSMUSG00000039108.15	novel	2534	9	NA	NA	-78	0	combination_of_known_junctions	TRUE	canonical	3	24	junction_3	16.1176232049821	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCCTCTGTCCGTCAC	NA	False	NA	15	True	AATAAA	-16	NA	179666701	179677254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_179667106_179668427_179668592_179669692_179669829_179670750_179670868_179673153_179673322_179673586_179673665_179673853_179674016_179674293_179674445_179675478_179675664_179676090
transcript_82544.known	chr2	+	2534	9	FSM	ENSMUSG00000039108.15	ENSMUST00000055485.12	2534	9	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	10.2705586508232	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCCTCTGTCCGTCAC	NA	False	NA	15	True	AATAAA	-16	NA	179666779	179677254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179667106_179668427_179668592_179669692_179669829_179673153_179673322_179673586_179673665_179673853_179674016_179674293_179674445_179675478_179675664_179676090
transcript_82551.nnic	chr2	+	2366	7	NIC	ENSMUSG00000039108.15	novel	2534	9	NA	NA	-78	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_3	21.8993911635309	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCCTCTGTCCGTCAC	NA	False	NA	15	True	AATAAA	-16	NA	179666701	179677254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_179667106_179668427_179668592_179669692_179669829_179673853_179674016_179674293_179674445_179675478_179675664_179676090
transcript_82552.known	chr2	-	1515	7	FSM	ENSMUSG00000027566.16	ENSMUST00000126021.8	1515	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1822.50292638082	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684188	179678166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179683431
transcript_82554.known	chr2	-	914	7	FSM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	3926	junction_1	568.041078326794	1547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684226	179678166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
transcript_82556.known	chr2	-	1157	7	FSM	ENSMUSG00000027566.16	ENSMUST00000129529.9	1157	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1848.62763662369	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684203	179678166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_179678633_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
transcript_8256.nic	chr10	-	908	5	ISM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	-32	1137	-9	0	5prime_fragment	FALSE	canonical	3	102	junction_1	10.2072278312968	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGAGTATCGTTCAGGGC	NA	False	NA	NA	False	ACTAAA	-25	NA	13744733	13529331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
transcript_82563.known	chr2	-	292	2	FSM	ENSMUSG00000027566.16	ENSMUST00000155898.2	292	2	0	0	0	0	multi-exon	FALSE	canonical	3	4701	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTGTGACACGTATAAAC	NA	False	NA	NA	False	NA	NA	NA	179684178	179681088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_179681273_179684070
transcript_82564.known	chr2	+	4343	11	FSM	ENSMUSG00000039086.10	ENSMUST00000041126.9	4343	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	6.29603049547888	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATTTCTGTTTATTGAG	NA	False	NA	18	True	ATTAAA	-19	NA	179684301	179711994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179684662_179694256_179694334_179695101_179695187_179696811_179696957_179697493_179697692_179699377_179699543_179699880_179699983_179701128_179701222_179703702_179703823_179705063_179705192_179709124
transcript_82569.nic	chr2	+	1722	10	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_3	39.9749921826134	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712355	179727688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_82570.known	chr2	+	1730	10	FSM	ENSMUSG00000039069.20	ENSMUST00000184862.8	1730	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	58.7703208880465	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712384	179727695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
transcript_82571.known	chr2	+	2224	10	FSM	ENSMUSG00000039069.20	ENSMUST00000147264.8	2224	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	62.4553173610275	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712380	179727688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724554_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_82577.nnic	chr2	+	2146	10	NNC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	58.4987073825747	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712400	179727688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_179712878_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_82585.nnic	chr2	+	1583	9	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	58.60873974929	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712355	179727688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_82587.nnic	chr2	+	1628	9	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	53.7558136390847	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712355	179727688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_179712409_179713586_179713680_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_82599.nic	chr2	+	1489	8	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	60.3080527333605	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712355	179727688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_179712409_179713586_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_8260.nic	chr10	-	2264	3	ISM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	-100	147831	-77	-2135	5prime_fragment	FALSE	canonical	3	116	junction_2	6.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTCACATTGAAGTGAACA	NA	False	NA	NA	False	NA	NA	NA	13744801	13676025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_13677694_13704986_13705143_13744361
transcript_82600.nic	chr2	+	1519	8	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_6	74.3955232359516	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGGATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	179712355	179727688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_179712409_179713586_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
transcript_82604.nic	chr2	+	1389	6	ISM	ENSMUSG00000039069.20	ENSMUST00000147264.8	2224	10	-25	3005	-25	0	5prime_fragment	FALSE	canonical	3	103	junction_3	49.2203210066737	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	179712355	179724683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878
transcript_8261.nic	chr10	-	2126	3	ISM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	-100	147969	-77	-2273	5prime_fragment	FALSE	canonical	3	116	junction_2	6.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTACTCTTCCAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	13744801	13676163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_13677694_13704986_13705143_13744361
transcript_82611.known	chr2	+	1444	7	FSM	ENSMUSG00000039069.20	ENSMUST00000108901.8	1444	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	63.2077702677623	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179713585	179727695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_82612.known	chr2	+	1009	2	FSM	ENSMUSG00000039069.20	ENSMUST00000136803.2	1009	2	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	179720412	179724683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179720617_179723878
transcript_82617.known	chr2	-	1574	3	FSM	ENSMUSG00000039059.12	ENSMUST00000166724.2	1574	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAGACAATCCGGGAGT	NA	False	NA	NA	False	NA	NA	NA	179745967	179742071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_179743210_179744521_179744689_179745698
transcript_82618.known	chr2	-	1040	2	FSM	ENSMUSG00000039059.12	ENSMUST00000166392.2	1040	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGACTGGGGAGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	179745128	179742776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_179743210_179744521
transcript_82621.known	chr2	+	2805	14	FSM	ENSMUSG00000039050.9	ENSMUST00000040668.9	2805	14	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_6	20.3809866146027	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGGTTGAAGGTTTGA	NA	False	NA	10	True	ATTAAA	-16	NA	179761098	179804473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179803281
transcript_82623.nnic	chr2	+	2538	14	NNC	ENSMUSG00000039050.9	novel	2805	14	NA	NA	-9	-220	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	46.788963448571	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTGTGTCCACCTCTGC	NA	False	NA	8	True	ATTAAA	-16	NA	179761118	179804253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_179761263_179778771_179778906_179780032_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179803281
transcript_82624.nnic	chr2	+	2818	14	NNC	ENSMUSG00000039050.9	novel	2805	14	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	46.788963448571	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGGTTGAAGGTTTGA	NA	False	NA	10	True	ATTAAA	-16	NA	179761058	179804473	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_179761263_179778771_179778906_179780032_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179803281
transcript_82625.known	chr2	+	1688	13	FSM	ENSMUSG00000039050.9	ENSMUST00000142376.2	1688	13	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_6	20.4306074853936	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACATATGTTGCTTAAAA	NA	False	NA	NA	False	AATGAA	-18	NA	179761196	179801085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821
transcript_8263.known	chr10	-	3254	2	FSM	ENSMUSG00000019806.14	ENSMUST00000161729.2	3254	2	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAGCACCT	NA	False	NA	NA	False	NA	NA	NA	13744720	13702247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_13705143_13744361
transcript_82633.known	chr2	+	1535	10	FSM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	0	0	0	0	multi-exon	FALSE	canonical	3	1931	junction_6	170.679108342794	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	2	True	AATAAA	-22	NA	179813277	179818079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817549_179817646_179817750_179817866
transcript_82649.known	chr2	+	2576	5	FSM	ENSMUSG00000039041.16	ENSMUST00000128029.8	2576	5	0	0	0	0	multi-exon	FALSE	canonical	3	1931	junction_4	179.611386053335	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTATGGTCTGGGCCTGTG	NA	False	NA	0	True	AATAAA	-20	NA	179813398	179818077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179816740_179816952
transcript_82652.known	chr2	-	11388	79	FSM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	0	0	0	0	multi-exon	TRUE	canonical	2	61	junction_68	85.5106215839985	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGTGTGTTGATTTATA	NA	False	NA	-4	True	ATTAAA	-14	NA	179867652	179818165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559_179824663_179824756_179824899_179825112_179825268_179825410_179825528_179825810_179826008_179826193_179826365_179827121_179827234_179827415_179827527_179827606_179827759_179828354_179828505_179828593_179828775_179828968_179829070_179829338_179829554_179829651_179829733_179830057_179830186_179830359_179830474_179831125_179831357_179831952_179832037_179832122_179832225_179832432_179832595_179832697_179832839_179833020_179833166_179833343_179833549_179833886_179834099_179834181_179834298_179834655_179834796_179835196_179835324_179835484_179835687_179835767_179835866_179836282_179836392_179836467_179836629_179836938_179837093_179837164_179837272_179837347_179837491_179837673_179837813_179837960_179838118_179838276_179838377_179838828_179838935_179839018_179839069_179839165_179839272_179839509_179839563_179840053_179840192_179840267_179840403_179840488_179840624_179840722_179840861_179840942_179841084_179843250_179843314_179843513_179843649_179843771_179843863_179843953_179844073_179844184_179844301_179848517_179848616_179848725_179848897_179848979_179849099_179850046_179850165_179863018_179863172_179867283
transcript_82653.known	chr2	+	394	6	FSM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	0	0	0	0	multi-exon	FALSE	canonical	3	3954	junction_5	1417.02976680097	2256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTTGCTGTTTTTAC	NA	False	NA	26	True	AATAAA	-27	NA	179899169	179900238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
transcript_82656.known	chr2	+	481	5	FSM	ENSMUSG00000039001.13	ENSMUST00000148629.2	481	5	0	0	0	0	multi-exon	FALSE	canonical	3	5195	junction_1	969.972422288386	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	23	True	AATAAA	-24	NA	179899171	179900235	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022
transcript_82661.known	chr2	-	2975	10	FSM	ENSMUSG00000038990.15	ENSMUST00000108891.2	2975	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	39.9001841018062	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCTTGCTTGTCTCCTT	NA	False	NA	-1	True	AGTAAA	-18	NA	179915289	179900332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179902974_179903308_179903475_179903909_179904019_179904870_179904949_179906006_179906100_179906195_179906268_179914892
transcript_82664.nic	chr2	-	2903	9	NIC	ENSMUSG00000038990.15	novel	2975	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	51.4823999052103	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCTTGCTTGTCTCCTT	NA	False	NA	-1	True	AGTAAA	-18	NA	179915289	179900332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179902974_179903308_179903475_179903909_179904019_179904870_179904949_179906006_179906100_179914892
transcript_8267.known	chr10	-	6507	25	FSM	ENSMUSG00000039116.8	ENSMUST00000041168.6	6507	25	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	30.3030698389894	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCAGTTCCTTTATGAG	NA	False	NA	-2	True	AATAAA	-25	NA	14420780	14278326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_14281183_14283609_14283656_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
transcript_82675.known	chr2	-	4561	7	FSM	ENSMUSG00000038990.15	ENSMUST00000136706.8	4561	7	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_5	11.9826263120125	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACTTCCTTGCTTGTCTC	NA	False	NA	-4	True	AGTAAA	-15	NA	179915256	179900335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179904949_179906006_179906100_179906195_179906268_179914892
transcript_82678.nnic	chr2	+	2867	13	NNC	ENSMUSG00000038963.16	novel	3002	13	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_9	16.583123951777	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAATGATCCTTGTGTG	NA	False	NA	3	True	AATATA	-12	NA	180098023	180116638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114473_180114607_180114627_180114895_180114961_180115306_180115456_180115896
transcript_8268.nic	chr10	-	5465	25	NIC	ENSMUSG00000039116.8	novel	6507	25	NA	NA	-16	260	combination_of_known_junctions	FALSE	canonical	3	71	junction_20	10.9657769395921	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACATTCCAAATCACATAAA	NA	False	NA	-1	True	ATTAAA	-9	NA	14421419	14280045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14331881_14331966_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
transcript_82680.known	chr2	+	3010	12	FSM	ENSMUSG00000038963.16	ENSMUST00000038259.13	3010	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.21568539381252	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTATGTCTAAGCGTCTG	NA	False	NA	25	True	AATATA	-34	NA	180098037	180116660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
transcript_8269.nic	chr10	-	4952	25	NIC	ENSMUSG00000039116.8	novel	6507	25	NA	NA	140	-97	combination_of_known_junctions	FALSE	canonical	3	71	junction_20	10.9657769395921	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGGCAAATATTGAATAT	NA	False	NA	NA	False	ATTAAA	-18	NA	14421263	14280402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14331881_14331966_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
transcript_82694.known	chr2	+	1510	5	FSM	ENSMUSG00000027569.16	ENSMUST00000029085.9	1510	5	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	10.4253297309965	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-3	NA	180224504	180228080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180224749_180225193_180225316_180226198_180226281_180226589_180226665_180227093
transcript_82695.known	chr2	+	1825	4	FSM	ENSMUSG00000027569.16	ENSMUST00000150757.8	1825	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	3.55902608401044	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224515	180228097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180224749_180225193_180225316_180226198_180226665_180227093
transcript_82698.known	chr2	+	2673	3	FSM	ENSMUSG00000027569.16	ENSMUST00000149969.2	2673	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224550	180228097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180224749_180225193_180226665_180227093
transcript_82699.known	chr2	+	3150	2	FSM	ENSMUSG00000027569.16	ENSMUST00000130277.8	3150	2	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224518	180228097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180226665_180227093
transcript_8270.known	chr10	-	4482	24	FSM	ENSMUSG00000039116.8	ENSMUST00000238680.2	4482	24	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_19	18.4758566210825	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACACGCAGCCTAAGCATC	NA	False	NA	NA	False	NA	NA	NA	14420780	14280305	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
transcript_82705.nnic	chr2	+	2226	8	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	-55	-7	at_least_one_novel_splicesite	TRUE	canonical	3	58	junction_7	13.998542198153	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTGTGGCCGTGTT	NA	False	NA	15	True	AATAAA	-15	NA	180231199	180237622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000_180236947_180237000
transcript_82707.known	chr2	+	2449	7	FSM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	11.4370256428652	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGCCGTGTTCTGTTTG	NA	False	NA	22	True	AATAAA	-22	NA	180231037	180237629	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
transcript_82710.known	chr2	+	2846	32	FSM	ENSMUSG00000027570.16	ENSMUST00000103059.2	2846	32	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	6.14327716438208	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTTAAGAACAATTTACCT	4871	False	NA	NA	False	AATAAA	-17	NA	180240014	180263978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180240119_180240658_180240728_180241837_180241874_180242314_180242387_180243374_180243429_180244434_180244471_180244894_180244919_180245149_180245204_180245541_180245596_180245926_180245969_180247010_180247068_180247519_180247574_180248267_180248322_180248600_180248655_180248875_180248930_180249419_180249474_180250224_180250279_180251118_180251173_180251273_180251328_180251848_180251894_180251982_180252037_180252452_180252507_180253052_180253107_180253221_180253294_180254746_180254783_180255939_180255985_180257080_180257114_180257269_180257417_180257595_180257651_180258173_180258357_180261485_180261564_180263022
transcript_82712.nic	chr2	+	2175	22	ISM	ENSMUSG00000027570.16	ENSMUST00000103059.2	2846	32	6738	384	1775	199	3prime_fragment	FALSE	canonical	2	8	junction_11	3.68363421063118	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAGTACTGGTTATAGTG	NA	False	NA	NA	False	AATAAA	-20	NA	180246752	180263594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_+_180247068_180247519_180247574_180248267_180248322_180248600_180248655_180248875_180248930_180249419_180249474_180250224_180250279_180251118_180251173_180251273_180251328_180251848_180251894_180251982_180252037_180252452_180252507_180253052_180253107_180253221_180253294_180254746_180254783_180255939_180255985_180257080_180257114_180257269_180257417_180257595_180257651_180258173_180258357_180261485_180261564_180263022
transcript_82716.known	chr2	-	4281	15	FSM	ENSMUSG00000038914.16	ENSMUST00000103056.10	4281	15	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_14	51.2897431764095	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTAGACACATAGCTCT	NA	False	NA	NA	False	NA	NA	NA	180344143	180311005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180311380_180312057_180312148_180312653_180312808_180313184_180313708_180314075_180314212_180315023_180315129_180315267_180315385_180316483_180316644_180316760_180317221_180325601_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180343753
transcript_82719.nic	chr2	-	2432	7	ISM	ENSMUSG00000038914.16	ENSMUST00000103057.8	4906	15	-110	6680	-110	-5755	5prime_fragment	FALSE	canonical	3	75	junction_1	41.0595773101586	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGCCATTGTATATGTCA	NA	False	NA	NA	False	AATATA	-33	NA	180351902	180316760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_180317221_180325601_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
transcript_82721.known	chr2	-	4613	6	FSM	ENSMUSG00000038914.16	ENSMUST00000103055.8	4613	6	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_5	13.3626344707921	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTATCCTTCTGTGT	NA	False	NA	-7	True	TTTAAA	-31	NA	180351792	180322850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
transcript_82722.known	chr2	-	4898	6	FSM	ENSMUSG00000038914.16	ENSMUST00000130986.8	4898	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	68.2864554651945	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCGCTGTTACAGTTTT	NA	False	NA	-22	True	TTTAAA	-16	NA	180344143	180322865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180343753
transcript_82727.known	chr2	-	1636	6	FSM	ENSMUSG00000038914.16	ENSMUST00000103054.4	1636	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	78.9718937344167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAGGAAAAGGTCAAGAC	NA	False	NA	NA	False	AAAACA	-4	NA	180343785	180326816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180326970_180329268_180329591_180330616_180331449_180332314_180332427_180333656_180333842_180343753
transcript_82731.nic	chr2	-	1640	5	ISM	ENSMUSG00000038914.16	ENSMUST00000130986.8	4898	6	242	3951	-116	0	5prime_fragment	FALSE	canonical	3	16	junction_4	75.5723990620914	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAGGAAAAGGTCAAGAC	NA	False	NA	NA	False	AAAACA	-4	NA	180343901	180326816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180343753
transcript_82734.nic	chr2	-	1692	5	ISM	ENSMUSG00000038914.16	ENSMUST00000103055.8	4613	6	-110	3966	-110	0	5prime_fragment	FALSE	canonical	3	159	junction_4	14.0267601391055	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAGGAAAAGGTCAAGAC	NA	False	NA	NA	False	AAAACA	-4	NA	180351902	180326816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr2_-_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
transcript_82741.known	chr2	+	1655	5	FSM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	7.56224173112709	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGCTTCTAAAAAGTTCT	NA	False	NA	18	True	AATAAA	-29	NA	180351909	180360526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630
transcript_82750.nic	chr2	+	2198	13	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	51.5985437994351	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367062	180384073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_180367245_180373672_180373801_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_82754.known	chr2	+	2275	13	FSM	ENSMUSG00000023393.16	ENSMUST00000094218.4	2275	13	0	0	0	0	multi-exon	TRUE	canonical	3	124	junction_2	30.6879455161143	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367055	180384073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_82763.nnic	chr2	+	2149	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	26	0	combination_of_known_splicesites	TRUE	canonical	3	57	junction_3	52.1550453966879	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367081	180384073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_180367245_180373672_180373871_180374225_180374366_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_82765.nic	chr2	+	2576	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	54	0	intron_retention	FALSE	canonical	3	182	junction_6	18.7713514794124	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367109	180384073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_180367245_180373672_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_82789.nnic	chr2	-	2714	6	NNC	ENSMUSG00000038848.15	novel	3184	5	NA	NA	-100	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	241.575329866276	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTTCTTGTTTTC	NA	False	NA	-2	True	NA	NA	NA	180562842	180546169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_180547462_180552479_180553254_180553823_180554001_180560927_180561008_180562104_180562130_180562476
transcript_82791.known	chr2	-	2272	6	FSM	ENSMUSG00000038848.15	ENSMUST00000108876.9	2272	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	294.883977184248	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAAAACACCTAATACA	NA	False	NA	37	True	TATAAA	-9	NA	180562742	180547162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180547462_180552479_180554001_180560927_180561008_180561698_180561780_180562104_180562130_180562476
transcript_82795.known	chr2	-	3184	5	FSM	ENSMUSG00000038848.15	ENSMUST00000037299.15	3184	5	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_4	33.5885024971343	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTTCTTGTTTTC	NA	False	NA	-2	True	NA	NA	NA	180562742	180546169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180547462_180552479_180554001_180560927_180561008_180562104_180562130_180562476
transcript_82801.known	chr2	+	1178	7	FSM	ENSMUSG00000038840.8	ENSMUST00000108875.2	1178	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.30761599444003	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCAGCTAGGCTCTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	180570815	180575803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180571307_180572597_180572698_180573051_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
transcript_82802.known	chr2	+	1529	6	FSM	ENSMUSG00000038840.8	ENSMUST00000137859.2	1529	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	3.81575680566778	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGCTCAGCTAGGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	180570815	180575800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180571307_180572597_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
transcript_82803.known	chr2	-	950	7	FSM	ENSMUSG00000027574.16	ENSMUST00000103053.10	950	7	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_2	10.8576649832682	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTCGCATCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	180596492	180576564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
transcript_82805.known	chr2	-	865	6	FSM	ENSMUSG00000027574.16	ENSMUST00000108873.9	865	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	45.5719211796036	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTCGCATCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	180596492	180576564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180576823_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
transcript_8281.known	chr10	+	468	1	FSM	ENSMUSG00000071532.7	ENSMUST00000096020.7	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	7726	False	NA	NA	False	NA	NA	NA	14398821	14399289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_14398800_14399300
transcript_82813.known	chr2	+	2714	14	FSM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	25.5745805752046	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCAGTGCTTGCTTCAC	4034	False	NA	25	True	NA	NA	NA	180609026	180624319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
transcript_8282.known	chr10	+	1003	2	FSM	ENSMUSG00000111888.2	ENSMUST00000220256.2	1003	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGAGTCAAGGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	14420233	14426775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_14421099_14426637
transcript_82820.nic	chr2	+	2729	14	NIC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	65.799947842644	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTGGTTTGTGTGTCT	4021	False	NA	-41	True	NA	NA	NA	180609013	180624253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_180609123_180609326_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
transcript_82823.nic	chr2	+	2603	13	NIC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_11	68.6480557303377	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTGGTTTGTGTGTCT	4019	False	NA	-41	True	NA	NA	NA	180609011	180624253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180622190_180622268_180622829
transcript_82831.known	chr2	+	1885	13	FSM	ENSMUSG00000027575.20	ENSMUST00000108861.8	1885	13	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_11	89.7402114748765	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTGCTAGTTCTTTC	4045	False	NA	NA	False	TTTAAA	-5	NA	180609037	180623493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180609123_180609326_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180622190_180622268_180622829
transcript_82851.known	chr2	-	4565	6	FSM	ENSMUSG00000027577.15	ENSMUST00000067120.14	4565	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.1540659228538	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCGTGTGGCCCTGTCTT	1536	False	NA	1	True	AATAAA	-24	NA	180681098	180664103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180666673_180669990_180671366_180675712_180675823_180675901_180675947_180679211_180679364_180680784
transcript_82853.known	chr2	-	4200	16	FSM	ENSMUSG00000016346.18	ENSMUST00000103051.9	4200	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	5.33499973966468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAGGAGGGCTATGCTC	NA	False	NA	NA	False	NA	NA	NA	180777054	180721373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180723569_180724125_180724250_180728761_180728894_180729367_180729477_180730139_180730364_180738742_180738773_180742342_180742412_180745434_180745465_180746679_180746775_180750814_180750911_180751467_180751579_180753792_180753919_180754855_180755032_180755364_180755492_180756431_180756523_180776589
transcript_82859.known	chr2	-	1226	8	FSM	ENSMUSG00000016346.18	ENSMUST00000154164.8	1226	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	4.20398256273205	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	180776970	180750236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180750355_180750814_180750911_180751467_180751579_180753792_180753919_180754855_180755032_180755364_180755492_180756431_180756523_180776589
transcript_8286.known	chr10	-	1974	8	FSM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_6	66.3663302881692	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTGGAAATCCAGTACT	NA	False	NA	NA	False	AATAAA	-22	NA	14581304	14530498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
transcript_82860.known	chr2	-	1686	7	FSM	ENSMUSG00000016346.18	ENSMUST00000123336.8	1686	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1.82574185835055	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	180776970	180750236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180750911_180751467_180751579_180753792_180753919_180754855_180755032_180755364_180755492_180756431_180756523_180776589
transcript_82862.known	chr2	+	689	5	FSM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	0	0	0	0	multi-exon	TRUE	canonical	3	258	junction_1	248.035279748668	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3425	False	NA	1	True	AATAAA	-17	NA	180829128	180830297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180829248_180829457_180829530_180829601_180829680_180829796_180829894_180829974
transcript_82863.known	chr2	+	1160	5	FSM	ENSMUSG00000016344.15	ENSMUST00000016488.13	1160	5	0	0	0	0	multi-exon	TRUE	canonical	3	201	junction_1	270.955139275859	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCCCAAGGTTGGGGATA	3336	False	NA	NA	False	NA	NA	NA	180829039	180830564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180829248_180829342_180829530_180829601_180829680_180829796_180829894_180829974
transcript_82866.known	chr2	+	750	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	285.921123544395	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3436	False	NA	1	True	AATAAA	-17	NA	180829139	180830297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
transcript_82868.known	chr2	+	1153	4	FSM	ENSMUSG00000016344.15	ENSMUST00000127971.8	1153	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	312.789954371229	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCTCCCCACTACTTGC	3385	False	NA	NA	False	NA	NA	NA	180829088	180830534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180829248_180829342_180829680_180829796_180829894_180829974
transcript_82869.known	chr2	+	771	3	FSM	ENSMUSG00000016344.15	ENSMUST00000138800.8	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	861	junction_2	3.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3625	False	NA	1	True	AATAAA	-17	NA	180829328	180830297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180829680_180829796_180829894_180829974
transcript_8287.known	chr10	-	753	7	FSM	ENSMUSG00000019868.17	ENSMUST00000149485.2	753	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	226.315168637799	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAGTGCCCTGCAGTATG	NA	False	NA	NA	False	NA	NA	NA	14581203	14531531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_14531590_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
transcript_82870.known	chr2	-	4121	10	FSM	ENSMUSG00000038705.14	ENSMUST00000049032.13	4121	10	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	10.3171916936948	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGTTTGTCTCTTGTAA	6176	False	NA	-4	True	AATAAA	-16	NA	180929828	180893241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180896217_180896934_180897058_180897287_180897426_180897664_180897737_180900776_180900935_180902087_180902192_180906773_180906902_180907607_180907706_180919741_180919915_180929676
transcript_82872.known	chr2	-	642	3	FSM	ENSMUSG00000038705.14	ENSMUST00000147665.2	642	3	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAGTCACCCTAAGTCT	6180	False	NA	NA	False	AAAAAG	-3	NA	180929824	180907384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180907706_180919741_180919915_180929676
transcript_82874.nnic	chr2	-	933	5	NNC	ENSMUSG00000027581.13	novel	1136	5	NA	NA	334	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	77.5995328594187	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGTGTGGCTTTTCAT	NA	False	NA	-6	True	AATAAA	-16	NA	180955959	180948251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955855
transcript_82875.known	chr2	-	1136	5	FSM	ENSMUSG00000027581.13	ENSMUST00000103045.4	1136	5	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	19.0312243431683	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGTGTGGCTTTTCAT	NA	False	NA	-6	True	AATAAA	-16	NA	180956293	180948251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955986
transcript_8288.known	chr10	+	376	2	FSM	ENSMUSG00000039910.11	ENSMUST00000218370.2	376	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGGCGCTTCCCCGACGGC	NA	False	NA	NA	False	NA	NA	NA	17598989	17599721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_17599330_17599685
transcript_82881.nic	chr2	+	4274	36	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_31	64.100711575534	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	NA	False	NA	13	True	AATAAA	-14	NA	180961502	180998407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
transcript_82882.nic	chr2	+	4256	36	NIC	ENSMUSG00000038685.19	novel	4322	34	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_34	59.3590527456187	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	NA	False	NA	13	True	AATAAA	-14	NA	180961502	180998407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
transcript_82893.nic	chr2	+	4429	35	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	-83	0	intron_retention	FALSE	canonical	3	57	junction_31	58.0188267380112	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961448	180998409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716_180997873_180997950
transcript_82897.nic	chr2	+	4193	35	NIC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	-83	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_33	59.5404619481285	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	NA	False	NA	13	True	AATAAA	-14	NA	180961448	180998407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
transcript_8290.known	chr10	+	1979	2	FSM	ENSMUSG00000039910.11	ENSMUST00000038107.9	1979	2	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	0	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATTTGGGGGGGGTTGTC	NA	False	NA	NA	False	AATAAA	-34	NA	17598965	17601422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_17599208_17599685
transcript_8291.known	chr10	+	4422	10	FSM	ENSMUSG00000039891.7	ENSMUST00000037964.7	4422	10	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	2.43938871112224	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTAGTAGGTTTTTTA	NA	False	NA	NA	False	ATTAAA	-17	NA	17672003	17721413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_17672170_17674835_17675282_17682512_17682605_17690976_17691148_17703539_17703735_17705983_17706104_17709025_17709101_17714655_17714749_17717173_17717270_17718445
transcript_82910.known	chr2	+	4401	34	FSM	ENSMUSG00000038685.19	ENSMUST00000054622.15	4401	34	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_31	50.0269348938753	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961554	180998409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
transcript_82912.known	chr2	+	4322	34	FSM	ENSMUSG00000038685.19	ENSMUST00000108814.8	4322	34	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_31	42.9439380842258	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTGTAGGCTGTCCAAT	NA	False	NA	-23	True	NA	NA	NA	180961577	180998371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716
transcript_82928.known	chr2	+	4135	33	FSM	ENSMUSG00000038685.19	ENSMUST00000048608.16	4135	33	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_31	57.4159627058321	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961577	180998409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997443_180997606_180997716
transcript_8293.known	chr10	-	275	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220433.2	275	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	67.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACATACGCAGGGGAAC	NA	False	NA	NA	False	NA	NA	NA	17898838	17887452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_17887565_17894586_17894654_17898742
transcript_82930.known	chr2	+	4243	33	FSM	ENSMUSG00000038685.19	ENSMUST00000108815.8	4243	33	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_30	41.94582396899	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961577	180998409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716
transcript_8294.known	chr10	-	768	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220110.2	768	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	67	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTCCTGGTGGCTGTG	NA	False	NA	-8	True	AATAAA	-18	NA	17898966	17887011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_17887565_17894586_17894650_17898814
transcript_8295.known	chr10	+	2595	20	FSM	ENSMUSG00000019854.18	ENSMUST00000126390.8	2595	20	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_9	41.6677266716506	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTCTCTGGAGAATACAT	NA	False	NA	2	True	AATAAA	-13	NA	17931687	18000880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17983415_17983497_17990146_17990235_17991463_17991566_17993412_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
transcript_82962.known	chr2	+	712	3	FSM	ENSMUSG00000038685.19	ENSMUST00000124149.2	712	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	116.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTGTCTGTATTGTGGTC	NA	False	NA	14	True	AATAAA	-15	NA	180997486	180998408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_180997606_180997716_180998052_180998150
transcript_82969.known	chr2	+	3666	11	FSM	ENSMUSG00000027582.17	ENSMUST00000116366.9	3666	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	46.2520269826091	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGGCTCTTGGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	181007215	181025421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181023188_181023986_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
transcript_8297.known	chr10	+	2462	19	FSM	ENSMUSG00000019854.18	ENSMUST00000150029.8	2462	19	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_9	47.5026964796685	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACATTGTATTTGTTGG	NA	False	NA	14	True	AATAAA	-25	NA	17931751	18000892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17990146_17990235_17991463_17991566_17993412_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
transcript_82974.nic	chr2	+	4500	10	NIC	ENSMUSG00000027582.17	novel	3666	11	NA	NA	-22	-3	intron_retention	FALSE	canonical	3	53	junction_7	40.6748625620843	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAAGGTTGGCTCTTGGTT	NA	False	NA	NA	False	ATTAAA	-10	NA	181007175	181025416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
transcript_82986.known	chr2	-	2447	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_2	23.8627025172878	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAGTTAGCCAGTCACA	6076	False	NA	30	True	AATAAA	-14	NA	181007197	180999625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
transcript_8299.known	chr10	-	1190	6	FSM	ENSMUSG00000059554.13	ENSMUST00000080860.13	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	8.9977775033616	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTTTTCTGTTTAGAA	NA	False	NA	0	True	AATAAA	-21	NA	18110744	18089423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18106166_18106367_18110599
transcript_82996.nnic	chr2	+	1946	7	NNC	ENSMUSG00000027582.17	novel	2072	6	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	46.3204418516634	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTCTCAGTGGAGAC	NA	False	NA	5	True	ATTAAA	-12	NA	181007171	181022575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr2_+_181007286_181007437_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
transcript_83.known	SIRV2	-	686	5	FSM	SIRV2A	SIRV203	686	5	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_4	259.923065540556	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGACGTGGACGTTTC	NA	False	NA	NA	False	NA	NA	NA	5895	3665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV2_-_3826_3966_4095_4338_4480_4687_4801_5751
transcript_830.nnic	chr1	+	6092	11	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-381	0	intron_retention	FALSE	non_canonical	0	0	junction_9	215.228808480649	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCTGAGGTTGGGTTAA	5232	False	NA	52	True	AATAAA	-15	NA	34478550	34488437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438_34486993_34487037_34487954_34488033
transcript_83002.known	chr2	-	2318	7	FSM	ENSMUSG00000038671.16	ENSMUST00000185118.8	2318	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	105.887387770635	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTAGCCAGTCACAAGGA	6138	False	NA	34	True	AATAAA	-18	NA	181007135	180999621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181001355_181001431_181001533_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
transcript_83006.known	chr2	+	2072	6	FSM	ENSMUSG00000027582.17	ENSMUST00000108807.9	2072	6	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_3	10.1074230147946	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTCTCAGTGGAGAC	NA	False	NA	5	True	ATTAAA	-12	NA	181007197	181022575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
transcript_83007.nic	chr2	+	2022	6	NIC	ENSMUSG00000027582.17	novel	2072	6	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_5	59.0410027015124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTCTTGGGGTGTCTCC	NA	False	NA	-39	True	NA	NA	NA	181007175	181022531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022195
transcript_8301.known	chr10	-	2255	5	FSM	ENSMUSG00000059554.13	ENSMUST00000052648.9	2255	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	22.796655456448	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGGAAAGAGCCAACTCC	NA	False	NA	NA	False	NA	NA	NA	18110726	18092531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
transcript_83022.known	chr2	-	5309	5	FSM	ENSMUSG00000027583.14	ENSMUST00000029106.13	5309	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	10.688779163216	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGCCTCCTGTGTGGTTT	8538	False	NA	NA	False	AATAAA	-23	NA	181101219	181029554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181033262_181037242_181037419_181053488_181053774_181065211_181066182_181101048
transcript_83024.known	chr2	-	2577	3	FSM	ENSMUSG00000027583.14	ENSMUST00000087409.10	2577	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	2	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCTGCTCTCTTTATT	8538	False	NA	-2	True	AATAAA	-17	NA	181101219	181052337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181053774_181065211_181066182_181101048
transcript_83025.known	chr2	-	3006	2	FSM	ENSMUSG00000027583.14	ENSMUST00000146446.2	3006	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGGAAGACTTTTAATTT	8538	False	NA	NA	False	NA	NA	NA	181101219	181063346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181066182_181101048
transcript_83026.known	chr2	+	985	9	FSM	ENSMUSG00000000827.19	ENSMUST00000108799.10	985	9	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	401.298965080898	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181139023	181157180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181152296_181152324_181153366_181153409_181154831_181154881_181156872
transcript_83029.known	chr2	+	3603	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTGTAAGGTTTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	181138957	181159759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
transcript_8303.known	chr10	+	4854	7	FSM	ENSMUSG00000039835.17	ENSMUST00000207038.2	4854	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	9.68532681717842	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGAGCCTGCCTCTCAT	NA	False	NA	NA	False	NA	NA	NA	18194732	18407721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_18195025_18348666_18348820_18373780_18373906_18387297_18387491_18399538_18402791_18403283_18403417_18407015
transcript_83037.known	chr2	+	2950	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAATTCACTATGCTCC	NA	False	NA	NA	False	NA	NA	NA	181138973	181159164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
transcript_83042.known	chr2	+	1799	7	FSM	ENSMUSG00000000827.19	ENSMUST00000069712.9	1799	7	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_3	303.991227943615	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGCTGTCATCTTT	NA	False	NA	NA	False	AATGAA	-44	NA	181138991	181158049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181153366_181153409_181154831_181154881_181156872
transcript_83046.known	chr2	+	3475	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAACATTTGTAAGGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	181138979	181159755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
transcript_83052.known	chr2	+	620	5	FSM	ENSMUSG00000000827.19	ENSMUST00000183956.8	620	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	425.963833558672	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCAGTGGGAAACGTGCT	NA	False	NA	NA	False	NA	NA	NA	181138956	181150061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149965
transcript_83065.nic	chr2	+	2845	7	NIC	ENSMUSG00000000826.17	novel	3728	6	NA	NA	-14	-974	intron_retention	FALSE	canonical	3	55	junction_1	77.7924589318699	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAATGAGAAATCTATTA	6991	False	NA	NA	False	NA	NA	NA	181162263	181193051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
transcript_83067.nic	chr2	+	3836	7	NIC	ENSMUSG00000000826.17	novel	3728	6	NA	NA	-14	0	intron_retention	FALSE	canonical	3	55	junction_1	77.7924589318699	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAACAAAAG	6991	False	NA	NA	False	NA	NA	NA	181162263	181194042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
transcript_83069.known	chr2	+	3728	6	FSM	ENSMUSG00000000826.17	ENSMUST00000116365.9	3728	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	67.7642973843897	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAACAAAAG	7046	False	NA	NA	False	NA	NA	NA	181162318	181194042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
transcript_83076.known	chr2	+	3664	6	FSM	ENSMUSG00000000826.17	ENSMUST00000108797.8	3664	6	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	79.8884221899519	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAACAAAGCAAA	7071	False	NA	NA	False	NA	NA	NA	181162343	181194025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181191065
transcript_8308.known	chr10	-	2535	4	FSM	ENSMUSG00000019853.7	ENSMUST00000020000.7	2535	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	0.471404520791032	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTGGTTCTTGGATCAT	NA	False	NA	NA	False	TTTAAA	-18	NA	18421824	18415245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_18417081_18420012_18420194_18420825_18420962_18421441
transcript_83081.known	chr2	+	6578	5	FSM	ENSMUSG00000000826.17	ENSMUST00000072334.12	6578	5	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	50.7413785780402	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTTGTCTTTTTAATT	7005	False	NA	NA	False	NA	NA	NA	181162277	181196926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181191065
transcript_8309.known	chr10	-	14579	34	FSM	ENSMUSG00000019852.8	ENSMUST00000215836.2	14579	34	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_19	2.00045908413321	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATGTGGAGAGCAATTT	NA	False	NA	NA	False	AATAAA	-20	NA	18619697	18457586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_18465521_18466877_18468091_18470655_18470778_18473075_18473208_18473443_18473547_18474933_18475049_18476181_18476359_18479154_18479284_18483392_18483538_18484068_18484173_18486951_18487075_18488885_18489031_18492596_18492777_18495395_18495542_18496873_18497008_18500895_18501214_18503368_18503520_18505778_18505890_18506027_18506244_18506566_18506675_18510510_18510677_18511427_18511595_18521908_18522808_18523551_18523665_18528281_18528616_18529957_18530063_18536344_18536424_18537093_18537137_18540638_18540762_18553572_18553642_18572300_18572433_18575076_18575159_18609805_18609858_18619288
transcript_83092.known	chr2	+	3054	21	FSM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_3	47.7921280128851	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGGGGCTTGGGCCTCA	2494	False	NA	28	True	ATTAAA	-16	NA	181243111	181297453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
transcript_83108.known	chr2	+	3048	21	FSM	ENSMUSG00000002455.15	ENSMUST00000136481.8	3048	21	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_20	98.1260796118952	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGAGTTATGTTGGGGCT	2491	False	NA	19	True	ATTAAA	-7	NA	181243108	181297444	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296755_181297213
transcript_8311.known	chr10	+	1952	3	FSM	ENSMUSG00000019851.9	ENSMUST00000019998.9	1952	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	1	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTCTGCTTTGTAGT	NA	False	NA	12	True	AATAAA	-14	NA	18720767	18732821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_18721155_18729284_18729426_18731397
transcript_83115.known	chr2	-	1849	15	FSM	ENSMUSG00000089917.8	ENSMUST00000057816.15	1849	15	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_14	14.4936650482413	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	4547	False	NA	1	True	AATAAA	-23	NA	181223801	181210941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
transcript_8312.known	chr10	-	4422	9	FSM	ENSMUSG00000019850.12	ENSMUST00000019997.11	4422	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.927024810886958	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGATGCTTTCTGTTAAT	NA	False	NA	NA	False	AATAAA	-16	NA	18891158	18876657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_18878764_18879323_18879506_18880204_18881080_18881298_18881480_18882610_18882782_18882929_18883078_18883892_18884084_18887228_18887539_18890900
transcript_8313.known	chr10	+	1974	7	FSM	ENSMUSG00000020009.14	ENSMUST00000164591.3	1974	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	10.3279555898864	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTTGGATATTCATTTA	NA	False	NA	17	True	AGTAAA	-18	NA	19467820	19485977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_19467946_19473163_19473265_19477067_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
transcript_83132.known	chr2	-	2131	5	FSM	ENSMUSG00000038605.12	ENSMUST00000183836.2	2131	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	19.6850196850295	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTCAGTGTTGGGTC	1043	False	NA	-5	True	AATAAA	-11	NA	181240991	181237013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181238399_181238539_181238681_181238964_181239137_181239220_181239387_181240724
transcript_83136.known	chr2	-	676	4	FSM	ENSMUSG00000089917.8	ENSMUST00000146823.8	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	13.0724477007517	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACCCTGTATGGTGCGA	4577	False	NA	NA	False	ATTAAA	-21	NA	181223771	181216077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181216333_181216443_181216551_181216639_181216831_181223648
transcript_83137.known	chr2	+	2446	12	FSM	ENSMUSG00000002455.15	ENSMUST00000139955.2	2446	12	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_3	39.124087399913	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGCACTCAGGAGGCAGA	2548	False	NA	NA	False	NA	NA	NA	181243165	181283218	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384
transcript_83138.known	chr2	+	1183	10	FSM	ENSMUSG00000059540.16	ENSMUST00000103042.10	1183	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6.17841723309237	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGGGTCCTGTCCTTCC	2292	False	NA	22	True	ATTAAA	-36	NA	181322102	181329864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181322269_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
transcript_8314.known	chr10	-	8099	10	FSM	ENSMUSG00000020003.17	ENSMUST00000020182.16	8099	10	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	9.53874490281544	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTTCTCCTGAAAGCCA	NA	False	NA	NA	False	ATTAAA	-31	NA	19783435	19729645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_19736741_19745039_19745140_19760523_19760580_19762805_19762920_19764401_19764509_19769995_19770105_19770470_19770549_19780308_19780460_19781590_19781649_19783204
transcript_83141.nic	chr2	-	944	6	NIC	ENSMUSG00000002458.14	novel	1511	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	48.4090900554844	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCTTTCAAGTTGCT	NA	False	NA	-12	True	AATAAA	-17	NA	181335777	181330211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr2_-_181330512_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
transcript_83142.known	chr2	-	1216	6	FSM	ENSMUSG00000002458.14	ENSMUST00000108776.8	1216	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	50.8660987299006	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTGGCCCTGTCCAACT	NA	False	NA	NA	False	NA	NA	NA	181335603	181330858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335155
transcript_83143.known	chr2	-	1511	6	FSM	ENSMUSG00000002458.14	ENSMUST00000002532.9	1511	6	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	20.8461027532726	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	-15	True	AATAAA	-14	NA	181335770	181330214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
transcript_83146.known	chr2	-	779	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108772.8	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	46.2729672703189	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGCAGGGTTCTAAGCT	NA	False	NA	NA	False	AATAGA	-15	NA	181335740	181330810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181335671
transcript_83148.known	chr2	-	1460	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108769.8	1460	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	23.2849200127464	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAAGCTGTTGTTATGGT	NA	False	NA	-3	True	AGTAAA	-10	NA	181335723	181330299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
transcript_8315.known	chr10	-	1047	9	FSM	ENSMUSG00000020003.17	ENSMUST00000166511.9	1047	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	48.6940383928053	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACATGTACTGAGATTTC	NA	False	NA	NA	False	NA	NA	NA	19783393	19736577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_19736741_19745039_19745140_19760523_19760580_19762805_19762920_19764401_19764509_19769995_19770105_19780308_19780460_19781590_19781649_19783204
transcript_83152.known	chr2	-	266	3	FSM	ENSMUSG00000002458.14	ENSMUST00000130712.2	266	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	56.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTGTGCATGTCTCAGG	NA	False	NA	NA	False	NA	NA	NA	181335700	181331454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_-_181331570_181333025_181333148_181335671
transcript_83153.known	chr2	+	3499	7	FSM	ENSMUSG00000027589.15	ENSMUST00000108754.8	3499	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	27.4028587316482	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTATTCTCAGTATTGCT	NA	False	NA	11	True	AATAAA	-14	NA	181479705	181499239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181479778_181482947_181483132_181484167_181484499_181486188_181486292_181488260_181488433_181493374_181493503_181496730
transcript_83157.known	chr2	+	2948	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	0	0	0	0	multi-exon	FALSE	canonical	3	712	junction_2	38.5	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTAGTGCATATAAGTGT	8896	False	NA	NA	False	NA	NA	NA	181506129	181512623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr2_+_181506363_181507738_181507827_181509996
transcript_8316.known	chr10	+	5450	30	FSM	ENSMUSG00000071369.12	ENSMUST00000095806.10	5450	30	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	5.46244338667921	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACAGGAATGTGCATTCC	NA	False	NA	NA	False	AATAAA	-15	NA	19810217	20018499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_19810821_19876311_19876452_19895303_19895328_19899353_19899548_19900630_19900800_19901926_19902034_19904778_19904950_19922117_19922231_19932220_19932381_19934682_19934837_19943574_19943683_19952227_19952278_19954987_19955084_19958132_19958215_19970107_19970242_19975250_19975379_19975806_19975944_19979905_19980012_19983894_19984053_19986463_19986642_19987523_19987545_19993890_19994069_19994160_19994330_20000697_20000884_20003397_20003504_20007710_20007955_20012639_20012753_20014008_20014122_20016394_20016472_20017268
transcript_83161.known	chr3	-	1777	6	FSM	ENSMUSG00000040374.14	ENSMUST00000071280.8	1777	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	21.3672646822189	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATGATTGTGCATTTAT	NA	False	NA	-4	True	AATAAA	-16	NA	5641188	5625563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5635546_5635690_5641097
transcript_83163.known	chr3	-	1749	5	FSM	ENSMUSG00000040374.14	ENSMUST00000059021.10	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	14.3592304807744	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTGCATTTATTTTT	NA	False	NA	0	True	AATAAA	-20	NA	5641299	5625559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5641097
transcript_83165.known	chr3	-	1587	4	FSM	ENSMUSG00000040374.14	ENSMUST00000195855.6	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	22.2161102706022	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTGCATTTATTTTT	NA	False	NA	0	True	AATAAA	-20	NA	5641205	5625559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_5626821_5628224_5628333_5628679_5628790_5641097
transcript_83166.known	chr3	-	433	1	FSM	ENSMUSG00000104274.2	ENSMUST00000193158.2	433	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGATAGCTCATGGACAG	NA	False	NA	NA	False	AATACA	-30	NA	7258270	7257837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_7257800_7258300
transcript_83168.known	chr3	+	3292	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCTTTTTTTTCTTGG	NA	False	NA	10	True	NA	NA	NA	7568542	7618896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
transcript_83176.known	chr3	-	4858	5	FSM	ENSMUSG00000040329.15	ENSMUST00000194279.6	4858	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.78535710713571	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAAACTAGTTCACCCT	NA	False	NA	NA	False	AATAAA	-8	NA	7678787	7635053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_7639008_7641057_7641190_7642233_7642315_7669090_7669225_7678230
transcript_83180.known	chr3	+	2073	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	0	0	0	0	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	1307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	23	True	AATAAA	-23	NA	8574419	8626666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
transcript_83184.known	chr3	-	2423	5	FSM	ENSMUSG00000040289.9	ENSMUST00000042412.5	2423	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	1.11803398874989	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTGTGTCTGTCTTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	8732316	8728418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_8730125_8731004_8731087_8731331_8731416_8731561_8731638_8731841
transcript_83185.known	chr3	-	783	3	FSM	ENSMUSG00000040269.6	ENSMUST00000042148.6	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	890	junction_1	0.5	792	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	False	NA	-1	True	NA	NA	NA	8988978	8867205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_8867475_8965045_8965228_8988646
transcript_83187.known	chr3	-	673	7	FSM	ENSMUSG00000027506.16	ENSMUST00000134788.8	673	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1284.12148957955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGAGAAGTCCTGAATTC	NA	False	NA	NA	False	AAAAAG	-37	NA	9069538	8996198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9068347_9068495_9069464
transcript_83190.known	chr3	-	6317	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCACTCTCTCCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	9069783	8990652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
transcript_8320.known	chr10	+	4252	18	FSM	ENSMUSG00000019996.18	ENSMUST00000020173.16	4252	18	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_11	29.0770364453276	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTCTATTTATTTAAAT	NA	False	NA	14	True	ATTAAA	-19	NA	20024216	20157268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929_20133044_20137604_20137730_20142481_20142598_20142868_20143123_20145105_20145335_20149025_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
transcript_83200.known	chr3	+	7414	6	FSM	ENSMUSG00000069114.9	ENSMUST00000155203.2	7414	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	6.07947366142827	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTCTGGCTTTGTGAAT	NA	False	NA	NA	False	TATAAA	-16	NA	9315661	9350393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_9317141_9329594_9330481_9343313_9343413_9345015_9345193_9345350_9345524_9345793
transcript_83204.known	chr3	+	987	4	FSM	ENSMUSG00000027533.11	ENSMUST00000029046.9	987	4	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	88.411914732499	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAAATGGTGTGATTATA	NA	False	NA	NA	False	AATAAA	-14	NA	10077607	10081667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_10077779_10080030_10080204_10080531_10080634_10081126
transcript_83206.known	chr3	+	3238	2	FSM	ENSMUSG00000027533.11	ENSMUST00000123744.2	3238	2	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGATATGTGTGTGGGT	NA	False	NA	NA	False	AATAAA	-15	NA	10077664	10081395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_10080634_10081126
transcript_83207.known	chr3	-	4185	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCATGTTTTTCTCACTT	NA	False	NA	NA	False	AGTAAA	-13	NA	10396499	10377015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
transcript_83212.known	chr3	-	1100	8	FSM	ENSMUSG00000027531.17	ENSMUST00000191670.6	1100	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	136.151026587449	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTTCTCTATGTTCCA	NA	False	NA	NA	False	NA	NA	NA	10396432	10379924	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_10380362_10381162_10381315_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
transcript_83215.known	chr3	-	2988	8	FSM	ENSMUSG00000027531.17	ENSMUST00000118410.8	2988	8	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_7	40.7390901885125	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGAATACCATTTTCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	10396499	10379013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
transcript_83218.nnic	chr3	-	1670	9	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	283.173726491354	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTGCATTTGATCTAT	NA	False	NA	-3	True	AATAAA	-43	NA	10416376	10405014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416054_10416118_10416301
transcript_83221.known	chr3	-	936	8	FSM	ENSMUSG00000039795.15	ENSMUST00000108377.8	936	8	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_2	268.235352035545	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGCTGTCTTAGAATT	NA	False	NA	NA	False	TTTAAA	-7	NA	10416373	10405678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_10405966_10406053_10406206_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
transcript_83224.nic	chr3	-	1870	8	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	3	120	junction_6	235.712813848219	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTGCATTTGATCTAT	NA	False	NA	-3	True	AATAAA	-43	NA	10416432	10405014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10413613_10416301
transcript_83231.nic	chr3	-	1897	7	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	120	junction_5	243.390404266251	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTGCATTTGATCTAT	NA	False	NA	-3	True	AATAAA	-43	NA	10416376	10405014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411298_10412224_10412472_10413569_10413613_10416301
transcript_83234.known	chr3	-	2288	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGAGTTTCTTTAGT	NA	False	NA	1	True	ATTAAA	-20	NA	10505147	10483205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
transcript_83236.known	chr3	-	2512	7	FSM	ENSMUSG00000027534.17	ENSMUST00000099223.11	2512	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	44.7837396086273	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGAGTGTTATCAGTGTC	NA	False	NA	2	True	AATAAA	-27	NA	10505162	10482876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_10484284_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
transcript_83241.known	chr3	+	6188	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTATCCTATTTCTTT	NA	False	NA	1	True	ATTAAA	-16	NA	10431966	10460397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
transcript_83245.known	chr3	+	2798	1	FSM	ENSMUSG00000095661.2	ENSMUST00000066794.9	2798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAAATAGTAAG	NA	False	NA	NA	False	AATAAA	-32	NA	12920895	12923693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_12920900_12923700
transcript_83246.known	chr3	+	5638	19	FSM	ENSMUSG00000027550.15	ENSMUST00000169079.8	5638	19	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_7	12.3057750168542	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCATCATTTCTATGT	NA	False	NA	20	True	AATAAA	-20	NA	14598882	14633361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
transcript_83249.known	chr3	+	3359	19	FSM	ENSMUSG00000027550.15	ENSMUST00000108370.9	3359	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_18	19.4050394371038	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGTTTTCTCTCTGAAA	NA	False	NA	NA	False	AATAAA	-27	NA	14598847	14637718	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14637463
transcript_83263.known	chr3	+	1751	8	FSM	ENSMUSG00000027552.15	ENSMUST00000165922.3	1751	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	75.6598186837988	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATCTTTGGGGGAATGT	1952	False	NA	29	True	AATAAA	-22	NA	14643730	14671368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_14644084_14652369_14652480_14653199_14653362_14666059_14666107_14667707_14667773_14668697_14668966_14670184_14670230_14670667
transcript_83273.known	chr3	-	559	4	FSM	ENSMUSG00000078784.9	ENSMUST00000108365.4	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	2488.45909483493	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676281	14671348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676076
transcript_83274.known	chr3	-	435	4	FSM	ENSMUSG00000078784.9	ENSMUST00000185384.7	435	4	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_3	245.494512271773	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTAAATCTTGTTAAT	NA	False	NA	0	True	AATAAA	-23	NA	14676345	14671343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676269
transcript_83275.nnic	chr3	-	1114	4	NNC	ENSMUSG00000078784.9	novel	1174	3	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	2375.53451295118	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676362	14671348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_14672136_14672236_14672354_14674600_14674718_14676269
transcript_83276.known	chr3	-	1174	3	FSM	ENSMUSG00000078784.9	ENSMUST00000186870.7	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_2	211	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676321	14671348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_14672354_14674600_14674718_14676269
transcript_83277.nic	chr3	+	499	2	ISM	ENSMUSG00000027552.15	ENSMUST00000029069.13	1779	8	-29	18913	-29	-18912	5prime_fragment	FALSE	canonical	3	210	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAGAACAGTATCCAGTG	1893	False	NA	NA	False	NA	NA	NA	14643671	14652456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_14644084_14652369
transcript_83278.known	chr3	-	508	2	FSM	ENSMUSG00000078784.9	ENSMUST00000190064.2	508	2	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCTGAAGTACAATTTTT	NA	False	NA	NA	False	TATAAA	-10	NA	14676303	14674243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_14674718_14676269
transcript_83280.known	chr3	+	1779	8	FSM	ENSMUSG00000027552.15	ENSMUST00000029069.13	1779	8	0	0	0	0	multi-exon	FALSE	canonical	2	153	junction_3	25.3191868844518	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATCTTTGGGGGAATGTG	1922	False	NA	30	True	AATAAA	-23	NA	14643700	14671369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_14644084_14652369_14652480_14653199_14653362_14666062_14666107_14667707_14667773_14668697_14668966_14670184_14670230_14670667
transcript_83281.known	chr3	+	2299	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCTTTTGGAAGAT	2179	False	NA	NA	False	AATAAA	-15	NA	14706786	14728062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
transcript_83283.nic	chr3	+	1754	8	NIC	ENSMUSG00000027562.13	novel	1788	7	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	37.7661980385333	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951283	14965830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_14951432_14951669_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
transcript_83284.known	chr3	+	1788	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951487	14965830	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
transcript_83288.known	chr3	+	3196	6	FSM	ENSMUSG00000047213.15	ENSMUST00000191774.6	3196	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	175.937943605125	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGATGTTTTATTGAT	NA	False	NA	5	True	ATTAAA	-17	NA	16237399	16269170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_16237685_16238085_16238111_16241130_16241280_16243641_16243728_16257989_16259589_16268118
transcript_83289.known	chr3	+	4929	6	FSM	ENSMUSG00000047213.15	ENSMUST00000108346.5	4929	6	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_4	138.147167904377	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTAGTTCATTTACATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	16237399	16271019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257350_16257384_16257989_16259589_16268118
transcript_83294.known	chr3	+	5102	5	FSM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_3	82.6211232070831	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCTTTCCTTTTTA	NA	False	NA	14	True	AATAAA	-16	NA	16237375	16271201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257989_16259589_16268118
transcript_83306.known	chr3	-	3673	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_6	16.1761140780679	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTATAATTACTAGACAG	NA	False	NA	NA	False	AATAAA	-23	NA	19217229	19185565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
transcript_83320.known	chr3	+	2953	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	0	0	0	0	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	670	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTGTATATTTATCTC	NA	False	NA	50	True	AATAAA	-36	NA	19242273	19274981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
transcript_83331.known	chr3	-	6298	13	FSM	ENSMUSG00000069094.13	ENSMUST00000099195.10	6298	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	44.9311201235353	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAAAGTCTACCTGTCAG	NA	False	NA	NA	False	TATAAA	-23	NA	19365486	19277271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_19282006_19283851_19283933_19284419_19284517_19285120_19285266_19287263_19287356_19287839_19287972_19290076_19290178_19290607_19290704_19295309_19295374_19297213_19297366_19310941_19311026_19314395_19314457_19365027
transcript_83334.known	chr3	+	1028	1	FSM	ENSMUSG00000048106.7	ENSMUST00000059704.6	1028	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGAATTGTACCAAGGA	NA	False	NA	NA	False	AAAAAG	-35	NA	19949145	19950173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_19949100_19950200
transcript_83337.known	chr3	-	4016	17	FSM	ENSMUSG00000027615.15	ENSMUST00000012580.13	4016	17	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	9.33324032691755	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGCATGTGTCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	20089479	20050108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
transcript_83338.known	chr3	-	3385	17	FSM	ENSMUSG00000027615.15	ENSMUST00000108321.2	3385	17	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_16	13.1101106021269	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGTCTAATAATTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	20089466	20050330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084574_20089212
transcript_83349.known	chr3	-	3395	10	FSM	ENSMUSG00000027615.15	ENSMUST00000137408.8	3395	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.31330927555995	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGTGGCTACTGAAAGAT	NA	False	NA	NA	False	AATAAA	-18	NA	20089458	20066686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
transcript_83350.known	chr3	-	2598	9	FSM	ENSMUSG00000027615.15	ENSMUST00000124808.8	2598	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	7.98044484975618	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACCAAATA	NA	False	NA	NA	False	NA	NA	NA	20089466	20069113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
transcript_83351.nic	chr3	+	3950	26	NIC	ENSMUSG00000002428.13	novel	4955	25	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_25	37.5784193387641	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTACCTTCTTTGGT	6895	False	NA	2	True	AATAAA	-6	NA	20111931	20172640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735_20170908_20171941
transcript_83352.known	chr3	+	4955	25	FSM	ENSMUSG00000002428.13	ENSMUST00000002502.12	4955	25	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_12	28.4765680965168	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTCACTTAGTGACT	6938	False	NA	16	True	AATAAA	-20	NA	20111974	20172654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735
transcript_83360.nic	chr3	+	2139	18	ISM	ENSMUSG00000002428.13	ENSMUST00000128127.8	3050	21	-52	8701	-43	-8701	5prime_fragment	FALSE	canonical	3	160	junction_12	27.2537734284624	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAAGCAAAATTAAAGGGA	6895	False	NA	NA	False	AATAAA	-25	NA	20111931	20153984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939
transcript_83363.nic	chr3	+	847	5	ISM	ENSMUSG00000002428.13	ENSMUST00000128127.8	3050	21	-52	43102	-43	1324	5prime_fragment	FALSE	canonical	3	170	junction_3	20.2299283241439	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGCTTTTTGTGGTTGGT	6895	False	NA	NA	False	NA	NA	NA	20111931	20119583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485
transcript_83364.nic	chr3	+	687	4	ISM	ENSMUSG00000002428.13	ENSMUST00000128127.8	3050	21	-52	43884	-43	542	5prime_fragment	FALSE	canonical	3	170	junction_3	23.2999761564017	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAACGTGGTTTTAGAGC	6895	False	NA	NA	False	AAGAAA	-2	NA	20111931	20118801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729
transcript_83365.known	chr3	+	641	3	FSM	ENSMUSG00000002428.13	ENSMUST00000154233.2	641	3	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	21.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCAATTTTCTTCTCTGC	6980	False	NA	NA	False	NA	NA	NA	20112016	20118259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_20112172_20113062_20113271_20117981
transcript_83366.known	chr3	-	1698	7	FSM	ENSMUSG00000019528.19	ENSMUST00000178328.8	1698	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	8.93805845186128	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTGGTTGTTTAAGTA	NA	False	NA	-5	True	AATAAA	-12	NA	20209260	20176250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_20177029_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161
transcript_83370.known	chr3	+	8237	17	FSM	ENSMUSG00000027630.14	ENSMUST00000193734.6	8237	17	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_2	67.0932187333414	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATGACAATTACTAATGT	NA	False	NA	11	True	ATTAAA	-23	NA	22130815	22270758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_22131119_22143576_22143687_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
transcript_83376.known	chr3	+	4209	16	FSM	ENSMUSG00000027630.14	ENSMUST00000202747.4	4209	16	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	26.4420540469575	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATAATAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22130890	22266915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_22131119_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
transcript_83382.known	chr3	+	444	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGCCACACCGGAGGTT	NA	False	NA	NA	False	NA	NA	NA	24387231	24387675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_24387200_24387700
transcript_83386.nic	chr3	-	4195	25	NIC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_24	156.17538218298	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATCTTTTATGTGTCCTG	1808	False	NA	NA	False	AATAAA	-16	NA	27208029	27151374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207771
transcript_83387.known	chr3	-	4086	25	FSM	ENSMUSG00000027699.20	ENSMUST00000108300.8	4086	25	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_24	111.161098998506	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1827	False	NA	NA	False	AATAAA	-20	NA	27208010	27151370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207865
transcript_8339.nnic	chr10	+	1994	7	NNC	ENSMUSG00000019996.18	novel	1008	7	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_6	110.886453435736	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGATGTATCTGATTGG	NA	False	NA	NA	False	AATAAA	-18	NA	20024700	20127638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20126340
transcript_83393.known	chr3	-	3985	24	FSM	ENSMUSG00000027699.20	ENSMUST00000176242.9	3985	24	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_21	183.743194259469	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTATGTGTCCTGTCA	1834	False	NA	NA	False	AATAAA	-19	NA	27208003	27151371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27203141_27203222_27204177_27204330_27207865
transcript_8340.known	chr10	+	1008	7	FSM	ENSMUSG00000019996.18	ENSMUST00000214823.2	1008	7	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_6	29.1018327028843	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTATCACT	NA	False	NA	NA	False	NA	NA	NA	20024743	20133284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929
transcript_83410.nic	chr3	-	504	4	ISM	ENSMUSG00000027699.20	ENSMUST00000176535.8	712	6	-67	2841	-17	-2781	5prime_fragment	FALSE	canonical	3	581	junction_3	66.9543791614028	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTATTAATATGGTAGGT	1793	False	NA	NA	False	AATAAA	-3	NA	27208044	27202957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_27203037_27203141_27203222_27204177_27204330_27207851
transcript_83411.known	chr3	+	4480	5	FSM	ENSMUSG00000027698.15	ENSMUST00000046515.15	4480	5	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	11.2333209693305	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGCCTCTGGCCCTTCCC	5568	False	NA	10	True	AATAAA	-17	NA	27237113	27299107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_27237365_27276816_27277046_27280221_27280292_27293680_27293853_27295349
transcript_83427.known	chr3	+	4849	27	FSM	ENSMUSG00000027695.17	ENSMUST00000120834.8	4849	27	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_2	5.02258214078643	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGGTGAAATCATTTCAT	8206	False	NA	NA	False	AATAAA	-24	NA	27992843	28187388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_27992900_28006661_28006812_28078311_28078503_28079361_28079490_28082744_28082891_28083315_28083422_28085385_28085452_28093924_28093984_28095333_28095427_28099092_28099246_28102161_28102312_28103357_28103442_28110611_28110694_28125314_28125426_28130539_28130741_28132352_28132567_28139934_28140064_28141320_28141440_28142794_28142909_28149919_28150031_28153808_28153898_28163883_28163998_28166391_28166442_28174842_28174978_28178721_28178876_28184461_28184580_28185662
transcript_83434.known	chr3	+	2220	2	FSM	ENSMUSG00000027692.17	ENSMUST00000161214.8	2220	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATCTG	4117	False	NA	NA	False	NA	NA	NA	28317424	28414935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_28317849_28413139
transcript_83435.known	chr3	+	5027	5	FSM	ENSMUSG00000050192.9	ENSMUST00000060500.9	5027	5	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	7.24568837309472	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGTATGTTCTTAAAAT	NA	False	NA	19	True	AATAAA	-22	NA	28835424	28852995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_28835563_28836164_28836366_28836876_28836982_28847833_28847966_28848544
transcript_83437.known	chr3	+	552	4	FSM	ENSMUSG00000039221.11	ENSMUST00000193168.2	552	4	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_2	3246.42750659175	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_28859693_28860648_28860742_28860818_28861008_28861335
transcript_83438.known	chr3	+	525	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	3779	junction_1	1855.270390596	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGTTCATCAGTGTGT	NA	False	NA	19	True	AATAAA	-24	NA	28859617	28861573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
transcript_83445.known	chr3	+	1908	1	FSM	ENSMUSG00000039221.11	ENSMUST00000195728.2	1908	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859656	28861564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_28859700_28861600
transcript_8345.known	chr10	+	3831	18	FSM	ENSMUSG00000019996.18	ENSMUST00000116259.5	3831	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	71.9742360670778	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTCCTGTGGTTTCACTT	NA	False	NA	15	True	AATAAA	-24	NA	20024729	20157336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929_20133044_20137580_20137730_20142481_20142598_20142868_20143123_20145105_20145335_20149025_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
transcript_83452.known	chr3	+	3474	8	FSM	ENSMUSG00000037730.14	ENSMUST00000195751.2	3474	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	49.6608908662808	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGACTCAACCCTTTTTA	8792	False	NA	NA	False	AATAAA	-35	NA	30656792	30672650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
transcript_83461.known	chr3	+	5555	8	FSM	ENSMUSG00000037730.14	ENSMUST00000192715.6	5555	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	33.260873624812	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACTCACTATTTTGAC	8213	False	NA	NA	False	AATAAA	-16	NA	30656213	30674022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
transcript_83470.known	chr3	+	4775	7	FSM	ENSMUSG00000037730.14	ENSMUST00000195396.6	4775	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	75.410911382608	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACTCACTATTTTGAC	8779	False	NA	NA	False	AATAAA	-16	NA	30656779	30674022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
transcript_83474.known	chr3	+	3394	7	FSM	ENSMUSG00000037730.14	ENSMUST00000047502.9	3394	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	66.6243615770955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATCTGTGTGTATGTT	8785	False	NA	NA	False	AATAAA	-20	NA	30656785	30672517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
transcript_83478.known	chr3	+	1522	1	FSM	ENSMUSG00000037730.14	ENSMUST00000194587.2	1522	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGCT	8787	False	NA	NA	False	ATTAAA	-33	NA	30656787	30658309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30656800_30658300
transcript_83483.known	chr3	-	1891	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	0	0	0	0	multi-exon	TRUE	canonical	3	297	junction_6	40.0710618776194	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30702018	30678415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
transcript_83491.known	chr3	+	2092	6	FSM	ENSMUSG00000027703.17	ENSMUST00000108265.3	2092	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	18.0177690072883	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGAATTAATGAAAATAA	NA	False	NA	NA	False	AATAAA	-13	NA	30702034	30726448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30702410_30704053_30705102_30709785_30709960_30713202_30713342_30714049_30714247_30726289
transcript_83501.nnic	chr3	+	807	3	NNC	ENSMUSG00000027703.17	novel	2387	8	NA	NA	10812	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	6.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTGTGGGAAGAATG	NA	False	NA	5	True	NA	NA	NA	30712846	30726580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_30713166_30714049_30714247_30726289
transcript_83505.nic	chr3	+	1814	2	ISM	ENSMUSG00000027703.17	ENSMUST00000108265.3	2092	6	39	20917	39	-20917	5prime_fragment	FALSE	canonical	3	7	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCCAGAACAAAATAGCATA	NA	False	NA	NA	False	AATAAA	-7	NA	30702073	30705531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_30702410_30704053
transcript_83508.known	chr3	-	1586	9	FSM	ENSMUSG00000074653.11	ENSMUST00000126658.8	1586	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_7	9.37333318515884	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGTGCTGCTTTGTAAAC	NA	False	NA	NA	False	NA	NA	NA	30753979	30733206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
transcript_83515.known	chr3	-	705	2	FSM	ENSMUSG00000074653.11	ENSMUST00000130731.2	705	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAACTGCCTTCAGTTTG	NA	False	NA	-7	True	AGTAAA	-20	NA	30753959	30752270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_30752864_30753847
transcript_83516.known	chr3	-	3284	7	FSM	ENSMUSG00000074653.11	ENSMUST00000108263.2	3284	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	10.7509689485801	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	30753992	30736828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
transcript_83519.known	chr3	+	3144	8	FSM	ENSMUSG00000051860.14	ENSMUST00000108262.10	3144	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.27140468220744	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGGCTCTTCTCTCTTT	7161	False	NA	NA	False	ATTAAA	-17	NA	30800488	30821323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30800537_30805193_30805317_30807248_30807374_30808411_30808491_30810286_30810898_30812474_30812594_30816287_30816399_30819395
transcript_83523.known	chr3	+	3967	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGCAGTAGTGATGGATT	NA	False	NA	NA	False	AATAAA	-21	NA	30847023	30875412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
transcript_83525.nic	chr3	+	829	4	ISM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	-26	11363	-26	8359	5prime_fragment	FALSE	canonical	3	760	junction_3	45.4923681023043	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAAAGGGAAATCAGAAAG	NA	False	NA	-5	True	GATAAA	-19	NA	30846997	30864049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970
transcript_83526.nic	chr3	+	928	4	ISM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	-26	11264	-26	8458	5prime_fragment	FALSE	canonical	3	760	junction_3	45.4923681023043	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGTGAAAAGGAAGATTC	NA	False	NA	94	True	AAAAAG	-19	NA	30846997	30864148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970
transcript_83529.nic	chr3	+	1911	5	NIC	ENSMUSG00000037661.15	novel	346	4	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	111.904814463007	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCATTTTATTTGTTTT	NA	False	NA	30	True	AATAAA	-43	NA	30910084	30951337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_30910207_30931383_30931482_30944090_30944191_30948277_30948390_30949858
transcript_8353.known	chr10	+	3164	13	FSM	ENSMUSG00000037608.17	ENSMUST00000190156.7	3164	13	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	383.38271421069	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCATATTTGTAACTATCA	2850	False	NA	8	True	AATAAA	-16	NA	20188274	20216008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20208141_20208304_20209137_20209319_20215454_20215668_20215797
transcript_83532.nic	chr3	+	2099	5	NIC	ENSMUSG00000037661.15	novel	754	5	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	77.9947914927657	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCATTTTATTTGTTTT	NA	False	NA	30	True	AATAAA	-43	NA	30910084	30951337	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_30910395_30931383_30931482_30944090_30944191_30948277_30948390_30949858
transcript_83533.known	chr3	+	754	5	FSM	ENSMUSG00000037661.15	ENSMUST00000147697.2	754	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	24.6018292002851	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCATCAGTCTCCGCAGC	NA	False	NA	NA	False	ACTAAA	-45	NA	30910291	30949970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30948277_30948390_30949858
transcript_83535.known	chr3	+	346	4	FSM	ENSMUSG00000037661.15	ENSMUST00000194979.6	346	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	25.3026129524645	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCAAAGAACTGCTCTCT	NA	False	NA	NA	False	ACTAAA	-16	NA	30910141	30949941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30910207_30931383_30931482_30944090_30944191_30949858
transcript_83536.known	chr3	+	1977	4	FSM	ENSMUSG00000037661.15	ENSMUST00000046748.13	1977	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	83.6341238171756	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910137	30951339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30910207_30931383_30931711_30944090_30944191_30949858
transcript_83537.nic	chr3	+	1989	4	NIC	ENSMUSG00000037661.15	novel	2139	4	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	76.6130247122221	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910084	30951339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_30910395_30931383_30931482_30944090_30944191_30949858
transcript_83538.known	chr3	+	2139	4	FSM	ENSMUSG00000037661.15	ENSMUST00000108258.8	2139	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	77.1895214535122	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910163	30951339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30949858
transcript_8354.known	chr10	+	3142	13	FSM	ENSMUSG00000037608.17	ENSMUST00000185800.7	3142	13	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_3	210.967743716638	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATATTTGTAACTATCAA	2858	False	NA	9	True	AATAAA	-17	NA	20188282	20216009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
transcript_83540.known	chr3	+	1689	3	FSM	ENSMUSG00000037661.15	ENSMUST00000166278.7	1689	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	125	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTTATTTGTTTTTTGT	NA	False	NA	34	True	AATAAA	-19	NA	30910098	30951341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30910207_30931383_30931482_30949858
transcript_83541.known	chr3	+	1916	3	FSM	ENSMUSG00000037661.15	ENSMUST00000108259.8	1916	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	143	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910098	30951339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_30910207_30931383_30931711_30949858
transcript_83548.known	chr3	+	4708	18	FSM	ENSMUSG00000037643.15	ENSMUST00000108249.9	4708	18	0	0	0	0	multi-exon	FALSE	canonical	3	904	junction_14	67.823095759034	855	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTTCGTGGTGGCGCACG	NA	False	NA	NA	False	NA	NA	NA	31049895	31107108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_31050235_31072698_31072821_31079278_31079369_31080401_31080453_31083634_31083721_31085232_31085374_31087326_31087379_31088647_31088707_31091994_31092172_31092598_31092697_31093177_31093265_31093516_31093653_31095590_31095679_31097839_31097966_31099030_31099111_31100621_31100712_31101120_31101237_31104338
transcript_83563.known	chr3	+	6578	7	FSM	ENSMUSG00000027660.17	ENSMUST00000118470.8	6578	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	38.1113135725105	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTTGGTTCAAGTCAT	NA	False	NA	14	True	AATAAA	-16	NA	31149206	31176722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_31149307_31150851_31152569_31165773_31165872_31167556_31167652_31170964_31171189_31171521_31171747_31172603
transcript_83567.known	chr3	+	6717	7	FSM	ENSMUSG00000027660.17	ENSMUST00000029194.12	6717	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	41.5668805126817	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTCAAGTCATCTTG	NA	False	NA	18	True	AATAAA	-20	NA	31149209	31176726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_31149307_31150851_31152569_31165773_31165872_31167556_31167790_31170964_31171189_31171521_31171747_31172603
transcript_83577.known	chr3	-	7797	6	FSM	ENSMUSG00000027663.13	ENSMUST00000029199.11	7797	6	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	21.7568380055559	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTCGGTTCTGAGTCGGG	NA	False	NA	0	True	AATAAA	-26	NA	32419827	32388940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419652
transcript_8358.nic	chr10	+	3072	12	ISM	ENSMUSG00000037608.17	ENSMUST00000043881.12	5437	13	-120	2615	-105	-322	5prime_fragment	FALSE	canonical	3	695	junction_11	105.23331025287	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATGAAGAGAAGAAGGACA	2685	False	NA	NA	False	NA	NA	NA	20188109	20215630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454
transcript_83584.known	chr3	+	2211	7	FSM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	65.8012580089131	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTCATAGTTACCACT	2906	False	NA	112	True	AATATA	-32	NA	32564407	32574982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
transcript_83585.known	chr3	+	1988	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	22	True	AATAAA	-22	NA	32564683	32574892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
transcript_8359.known	chr10	+	5307	12	FSM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_10	195.138687701892	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTGGTCTCTGTTTGCCT	2790	False	NA	16	True	AATAAA	-17	NA	20188214	20218247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
transcript_83599.known	chr3	+	4562	18	FSM	ENSMUSG00000027668.14	ENSMUST00000091257.11	4562	18	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_6	42.8432404539521	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATCTCAGTTAGTGA	NA	False	NA	NA	False	AATAAA	-29	NA	32583613	32633388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_32583845_32586046_32586166_32588386_32588523_32592418_32592582_32596954_32597080_32598215_32598325_32600736_32600845_32608303_32608458_32609622_32609691_32615613_32615736_32617160_32617288_32617523_32617629_32617941_32618045_32618224_32618455_32622405_32622559_32623636_32623834_32628382_32628518_32631211
transcript_83601.nnic	chr3	+	3168	18	NNC	ENSMUSG00000027668.14	novel	4562	18	NA	NA	18	326	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	124.664366008291	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGGCCTATCATTGTAGCC	NA	False	NA	22	True	ATTAAA	-19	NA	32583631	32631828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_32584029_32586046_32586166_32588386_32588523_32592418_32592582_32596954_32597080_32598215_32598325_32600736_32600845_32608303_32608458_32609622_32609691_32615613_32615736_32617160_32617288_32617523_32617629_32617941_32618045_32618224_32618455_32622405_32622559_32623636_32623834_32628382_32628518_32631211
transcript_83609.known	chr3	-	5997	10	FSM	ENSMUSG00000027669.15	ENSMUST00000155737.8	5997	10	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_8	7.61253028131584	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACTGTACCTTGTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	32670734	32634480	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_32639376_32641709_32641927_32643857_32644060_32644145_32644213_32645259_32645423_32647306_32647371_32650425_32650533_32652274_32652314_32656193_32656290_32670587
transcript_83614.known	chr3	+	2010	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762655	32781122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
transcript_83628.known	chr3	-	3364	7	FSM	ENSMUSG00000037531.9	ENSMUST00000043966.8	3364	7	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_5	35.1931180141168	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTCTCAAAAGTTCCT	NA	False	NA	NA	False	TATAAA	-14	NA	32791296	32779545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_32781867_32782580_32782677_32784229_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
transcript_83630.known	chr3	+	1079	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	1473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTTGCTTTACTTTTGG	NA	False	NA	10	True	AATAAA	-24	NA	32791138	32805715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
transcript_83635.known	chr3	+	1457	1	FSM	ENSMUSG00000027671.15	ENSMUST00000194226.2	1457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	32762698	32764155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_32762700_32764200
transcript_83636.known	chr3	+	7580	21	FSM	ENSMUSG00000056900.14	ENSMUST00000072312.12	7580	21	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	5.5578772926361	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGTCCCTTTATGGCTC	NA	False	NA	8	True	ATTAAA	-16	NA	32871694	32992220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_32872022_32891984_32892111_32901958_32902020_32908704_32908827_32915919_32916063_32919930_32920116_32931026_32931122_32935469_32935658_32940256_32940329_32940643_32940738_32948912_32949039_32956103_32956258_32959438_32959614_32965721_32965811_32968247_32968371_32969136_32969164_32969817_32969962_32971607_32971766_32973065_32973220_32985806_32985892_32987288
transcript_83647.known	chr3	+	2767	21	FSM	ENSMUSG00000056900.14	ENSMUST00000108228.8	2767	21	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	7.34353457130829	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAGAAGAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	32871719	32987435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_32872022_32891984_32892111_32901961_32902020_32908704_32908827_32915919_32916063_32919930_32920116_32931026_32931122_32935469_32935658_32940256_32940329_32940643_32940738_32948912_32949039_32956103_32956258_32959438_32959614_32965721_32965811_32968247_32968371_32969136_32969164_32969817_32969962_32971607_32971766_32973065_32973220_32985806_32985892_32987288
transcript_83652.known	chr3	+	2684	12	FSM	ENSMUSG00000027677.18	ENSMUST00000108210.9	2684	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_10	47.3543002489332	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTGGGGTAGAATATATG	NA	False	NA	-75	True	AAGAAA	-39	NA	33854399	33864093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987_33862098_33862834
transcript_83660.nic	chr3	+	1460	11	ISM	ENSMUSG00000027677.18	ENSMUST00000108210.9	2684	12	-84	2045	-8	0	5prime_fragment	FALSE	canonical	3	43	junction_10	44.1725027590695	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAACAAGTGCAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	33854315	33862048	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987
transcript_83663.known	chr3	+	4913	11	FSM	ENSMUSG00000027677.18	ENSMUST00000117915.8	4913	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	63.6361532464055	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAATATCTACCTCCAGT	NA	False	NA	NA	False	AATAAA	-33	NA	33854361	33866440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987_33862098_33862834
transcript_83668.known	chr3	+	9661	10	FSM	ENSMUSG00000027677.18	ENSMUST00000099153.10	9661	10	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_6	17.9285275124711	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCAGCTGTTCCCTCAA	NA	False	NA	NA	False	AATAAA	-24	NA	33853980	33869009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964
transcript_83672.nic	chr3	+	1620	9	ISM	ENSMUSG00000027677.18	ENSMUST00000199222.5	2438	12	-430	4960	-49	1602	5prime_fragment	FALSE	canonical	3	147	junction_6	18.6509885796973	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAGGAAATATCTCTGCC	NA	False	NA	NA	False	AATAGA	-43	NA	33853931	33858866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788
transcript_83673.known	chr3	+	1711	9	FSM	ENSMUSG00000027677.18	ENSMUST00000196975.5	1711	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	55.9741848980403	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTGTGTCCTGTTTAC	NA	False	NA	NA	False	NA	NA	NA	33854411	33861646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33858148_33858221_33858569_33858690_33858788_33858912_33860964
transcript_83674.known	chr3	+	680	3	FSM	ENSMUSG00000027677.18	ENSMUST00000200559.2	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	17.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	33854331	33855640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_33854586_33855104_33855230_33855339
transcript_83675.known	chr3	+	696	1	FSM	ENSMUSG00000027677.18	ENSMUST00000199523.2	696	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	33854323	33855019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_33854300_33855000
transcript_83687.known	chr3	-	2499	6	FSM	ENSMUSG00000027679.14	ENSMUST00000011029.12	2499	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1411.25087776766	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAACACCAA	NA	False	NA	NA	False	NA	NA	NA	34135461	34110168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_34112264_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
transcript_83689.known	chr3	-	659	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_3	262.703330774469	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTCATTGCTGACTTA	NA	False	NA	71	True	TATAAA	-1	NA	34135470	34131427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
transcript_83694.known	chr3	-	1695	5	FSM	ENSMUSG00000027679.14	ENSMUST00000117223.4	1695	5	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_2	271.507366382572	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCATTAGTCTACTTATGA	NA	False	NA	-84	True	AATAAA	-20	NA	34135411	34131582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
transcript_83698.known	chr3	+	2129	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4859	False	NA	20	True	ATTAAA	-23	NA	34074256	34123494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
transcript_83699.known	chr3	+	2127	15	FSM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_14	198.096296929405	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4856	False	NA	20	True	ATTAAA	-23	NA	34074253	34123494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
transcript_83700.known	chr3	-	551	5	FSM	ENSMUSG00000027679.14	ENSMUST00000120805.8	551	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	1441.31155549381	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAGGATTTCAAGAATT	NA	False	NA	26	True	NA	NA	NA	34135459	34131472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34135334
transcript_83701.known	chr3	+	3014	16	FSM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_15	191.49767622611	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGTAAGCAGTTTTTAATA	4859	False	NA	15	True	ATTAAA	-16	NA	34074256	34124471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
transcript_83705.known	chr3	+	2057	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	4607	False	NA	19	True	AATAAA	-24	NA	34704553	34706610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_34704600_34706600
transcript_83706.known	chr3	-	675	4	FSM	ENSMUSG00000105153.5	ENSMUST00000198364.2	675	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTTGTTAAGCTCCTTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	34770811	34763771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_34764079_34764315_34764508_34768115_34768187_34770706
transcript_83707.nnic	chr3	-	1240	7	NNC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	397	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	14.0564338768172	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTGGTTAGACTCCAAT	NA	False	NA	NA	False	AATAAA	-15	NA	35691317	35672771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_35673025_35673834_35673956_35677231_35677418_35678500_35678611_35681522_35681682_35682985_35683124_35691044
transcript_83712.known	chr3	+	4868	30	FSM	ENSMUSG00000037400.18	ENSMUST00000029257.15	4868	30	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_18	53.5097310762941	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTGTTGCATGTTATC	NA	False	NA	11	True	AATAAA	-17	NA	35808282	35910425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35891739_35893197_35893364_35903582_35903714_35909253
transcript_83717.known	chr3	+	6322	29	FSM	ENSMUSG00000037400.18	ENSMUST00000196700.5	6322	29	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_18	53.267171706715	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCCTGTTGTTGCATG	NA	False	NA	6	True	AATAAA	-12	NA	35808282	35910420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35893364_35903582_35903714_35909253
transcript_83729.known	chr3	+	1906	1	FSM	ENSMUSG00000037400.18	ENSMUST00000200351.2	1906	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	35808254	35810160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_35808300_35810200
transcript_83736.known	chr3	-	2455	19	FSM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_8	26.6884748788316	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGAGCTGTAGTTTTTTT	NA	False	NA	NA	False	TATAAA	-28	NA	36054827	36013981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
transcript_8375.nic	chr10	+	2653	10	ISM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	-105	9025	-105	-414	5prime_fragment	FALSE	canonical	3	760	junction_3	83.8212383587835	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGTAAGAAAGAGAGAGA	2685	False	NA	NA	False	NA	NA	NA	20188109	20209222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137
transcript_83754.known	chr3	-	4980	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	19.8445346520284	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTTTTATTGCTTCCAT	NA	False	NA	0	True	TATAAA	-17	NA	35987621	35946253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
transcript_83766.known	chr3	+	3930	18	FSM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	13.4755962948483	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCCTTTTTACCAAGGA	NA	False	NA	5	True	NA	NA	NA	36120127	36147002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230_36144304_36144979
transcript_83776.known	chr3	+	2905	17	FSM	ENSMUSG00000027710.15	ENSMUST00000198987.5	2905	17	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	13.8473824241262	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAAGAAAGAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	36120220	36145284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230_36144304_36144979
transcript_83780.nnic	chr3	+	3046	5	NNC	ENSMUSG00000033883.12	novel	6689	4	NA	NA	52	-3392	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	21.6852484422014	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAGTATATATTGAGTT	NA	False	NA	NA	False	AAAAAG	-12	NA	36205217	36221092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_36205345_36213670_36213798_36216780_36216877_36218204_36220629_36220820
transcript_83783.known	chr3	+	6689	4	FSM	ENSMUSG00000033883.12	ENSMUST00000197653.5	6689	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	1.4142135623731	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTACTATTATTTTATG	NA	False	NA	28	True	AATAAA	-19	NA	36205165	36224491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_36205345_36213670_36213798_36216780_36216877_36218204
transcript_83788.known	chr3	-	1731	13	FSM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	8.69985632065266	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTAGGTTTGTGTTT	NA	False	NA	3	True	AATAAA	-21	NA	36530043	36503071	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578_36529610_36529721
transcript_8379.nic	chr10	+	2461	9	ISM	ENSMUSG00000037608.17	ENSMUST00000186100.7	3231	13	-4	8008	-1	0	5prime_fragment	FALSE	canonical	3	760	junction_3	88.238225135142	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTGATTGTTCAAATTGT	2789	False	NA	NA	False	TATAAA	-15	NA	20188213	20208004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831
transcript_83790.known	chr3	+	1617	12	FSM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_11	43.5980892749872	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGAGAGCCGAATGAGT	NA	False	NA	15	True	AATAAA	-23	NA	36606754	36619876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366_36619446_36619577
transcript_83797.known	chr3	-	2965	8	FSM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	54.4767315990441	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTTGGTGGGCTGTGTG	NA	False	NA	-7	True	AATAAA	-21	NA	36626299	36619013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
transcript_838.known	chr1	+	5836	9	FSM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_1	56.5552826887109	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCTGAGGTTGGGTTAA	5613	False	NA	52	True	AATAAA	-15	NA	34478931	34488437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
transcript_83816.known	chr3	-	856	2	FSM	ENSMUSG00000027715.10	ENSMUST00000145309.2	856	2	0	0	0	0	multi-exon	FALSE	canonical	3	1062	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACACAGTGAGTTAAGATT	NA	False	NA	NA	False	NA	NA	NA	36626113	36624599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_36625129_36625786
transcript_83817.known	chr3	-	2687	19	FSM	ENSMUSG00000037325.11	ENSMUST00000108156.9	2687	19	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_12	6.84754619472471	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTCTTTATATATT	NA	False	NA	NA	False	ATTAAA	-21	NA	36667626	36627290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664505_36664714_36664778_36666160_36666227_36667398
transcript_8382.nic	chr10	+	2276	8	ISM	ENSMUSG00000037608.17	ENSMUST00000186100.7	3231	13	0	10880	0	-2872	5prime_fragment	FALSE	canonical	3	760	junction_3	90.8733139247902	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAAGGTACAGTTGTTC	2793	False	NA	NA	False	AAGAAA	-1	NA	20188217	20205132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055
transcript_83824.known	chr3	+	2916	17	FSM	ENSMUSG00000027722.15	ENSMUST00000198968.2	2916	17	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	114.842266146876	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474460	37633245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
transcript_83829.known	chr3	+	2890	16	FSM	ENSMUSG00000027722.15	ENSMUST00000029277.13	2890	16	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	86.3305276249369	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474446	37633245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_37474650_37478662_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
transcript_83839.known	chr3	-	1064	5	FSM	ENSMUSG00000045031.19	ENSMUST00000102955.11	1064	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.41869858279434	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTATCTTCTGGTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	37366595	37362770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_37363331_37363493_37363632_37364085_37364215_37364441_37364589_37366505
transcript_83840.known	chr3	-	1155	5	FSM	ENSMUSG00000050174.16	ENSMUST00000052645.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	11.8743420870379	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTTTTCTCTACTGA	NA	False	NA	62	True	TATAAA	-29	NA	37473745	37459058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473490
transcript_83841.known	chr3	-	1264	5	FSM	ENSMUSG00000050174.16	ENSMUST00000146324.8	1264	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	11.0792599030802	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTTTTCTCTACTGA	NA	False	NA	62	True	TATAAA	-29	NA	37474335	37459058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473971
transcript_83842.known	chr3	-	1808	4	FSM	ENSMUSG00000045031.19	ENSMUST00000071400.13	1808	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_2	8.9566858950296	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTCAGTATCTTATGCT	NA	False	NA	NA	False	TATAAA	-26	NA	37366595	37361897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_37363331_37363493_37363632_37364441_37364589_37366505
transcript_83843.known	chr3	-	762	4	FSM	ENSMUSG00000045031.19	ENSMUST00000075537.7	762	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	11.7851130197758	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAACAATCTGAAAATG	NA	False	NA	NA	False	AATAAA	-31	NA	37366569	37362908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_37363331_37364085_37364215_37364441_37364589_37366505
transcript_83845.known	chr3	+	2433	2	FSM	ENSMUSG00000051444.10	ENSMUST00000057975.8	2433	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCCATTCTGTTTTTT	1251	False	NA	7	True	AATAAA	-19	NA	37366702	37375599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_37366735_37373198
transcript_83846.known	chr3	+	2348	2	FSM	ENSMUSG00000051444.10	ENSMUST00000108121.4	2348	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCATTCTGTTTTTTATT	1253	False	NA	10	True	AATAAA	-22	NA	37366704	37375602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_37366735_37373284
transcript_83847.known	chr3	-	1070	5	FSM	ENSMUSG00000050174.16	ENSMUST00000099130.9	1070	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15.5804364508829	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTAGCTCTAATCCT	NA	False	NA	-14	True	AATAAA	-15	NA	37473739	37459134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_37459641_37463656_37463712_37466508_37466565_37470849_37471054_37473490
transcript_83848.nnic	chr3	+	2263	2	NIC	ENSMUSG00000037211.13	novel	2481	3	NA	NA	-62	-2	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCGAGTGCATCTTTTT	NA	False	NA	NA	False	AATATA	-17	NA	37694033	37698745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_37694255_37696703
transcript_83849.known	chr3	+	425	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7406	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATAAAATTTGACAATGG	7664	False	NA	NA	False	AAGAAA	-12	NA	37768888	37769313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_37768900_37769300
transcript_83852.known	chr3	+	6387	16	FSM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	25.5603860169078	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGCAGTATTATGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	40594915	40659204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_40595159_40608135_40608684_40618689_40618776_40627000_40627205_40629655_40629775_40633312_40633403_40633961_40634040_40637786_40637977_40642205_40642260_40645125_40645189_40646144_40646367_40646928_40647400_40648590_40648689_40651913_40652104_40654068_40654227_40655631
transcript_83857.nic	chr3	+	955	4	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	-13	32139	-13	18019	5prime_fragment	FALSE	canonical	3	18	junction_2	47.1475226166645	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCACAGTCGAGCACCCAAG	NA	False	NA	NA	False	AAGAAA	-3	NA	40594902	40627065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_40595159_40608135_40608684_40618689_40618776_40627000
transcript_83859.nic	chr3	+	1168	2	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	-13	50157	-13	1	5prime_fragment	FALSE	canonical	3	119	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCACTTGAGAACACC	NA	False	NA	2	True	AATAAA	-18	NA	40594902	40609047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_40595159_40608135
transcript_83860.known	chr3	+	2128	6	FSM	ENSMUSG00000069041.9	ENSMUST00000091184.9	2128	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	1.93907194296653	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGGAAAAAATAACTTAGC	NA	False	NA	NA	False	AATAAA	-12	NA	40663284	40680527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_40663657_40670945_40671074_40674920_40675039_40675936_40676092_40677055_40677182_40679298
transcript_83861.known	chr3	+	9479	19	FSM	ENSMUSG00000025757.14	ENSMUST00000204702.3	9479	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_16	4.58930587290297	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGAGTTTTGCACACCAG	NA	False	NA	9	True	AATAAA	-25	NA	40699861	40750538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_40700217_40705106_40705165_40707581_40707723_40711432_40711556_40714795_40714896_40715213_40715348_40721243_40721489_40721634_40721712_40722401_40722554_40723183_40723291_40724942_40725077_40726978_40727176_40733766_40733866_40735991_40736130_40738660_40738787_40739051_40739160_40739710_40739831_40741155_40741318_40743635
transcript_83863.nic	chr3	+	2220	15	ISM	ENSMUSG00000025757.14	ENSMUST00000204702.3	9479	19	-136	11854	-88	2412	5prime_fragment	FALSE	canonical	3	18	junction_5	4.12310562561766	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAGAGAAAGAAAGAAATGA	NA	False	NA	NA	False	GATAAA	-1	NA	40699725	40738684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_40700217_40705106_40705165_40707581_40707723_40711432_40711556_40714795_40714896_40715213_40715348_40721243_40721489_40721634_40721712_40722401_40722554_40723183_40723291_40724942_40725077_40726978_40727176_40733766_40733866_40735991_40736130_40738660
transcript_83866.known	chr3	+	3320	16	FSM	ENSMUSG00000025758.11	ENSMUST00000203895.3	3320	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	89.82788480694	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTGTAAATAATGTATT	7808	False	NA	NA	False	AAAACA	-16	NA	40754476	40771186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759446_40760356_40760921_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
transcript_83879.known	chr3	+	1599	5	FSM	ENSMUSG00000025758.11	ENSMUST00000203320.2	1599	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_3	14.0956553590104	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACTAATAGCTGCATGTA	7816	False	NA	NA	False	TTTAAA	-26	NA	40754484	40760500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442
transcript_83881.known	chr3	+	3277	13	FSM	ENSMUSG00000037818.17	ENSMUST00000108077.10	3277	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	7.57554545157567	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAACAAACAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	40848756	40891572	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_40848879_40859320_40859429_40860306_40860392_40864937_40865039_40871120_40871200_40871306_40871392_40873812_40873841_40877847_40877987_40884571_40884662_40885315_40885418_40887958_40888338_40889301_40889465_40889776
transcript_83884.known	chr3	-	3151	12	FSM	ENSMUSG00000025759.12	ENSMUST00000026859.11	3151	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	6.38308715692435	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATGAAGAGGACCTGAAT	NA	False	NA	16	True	AATAAA	-34	NA	40801320	40772537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_40774156_40776297_40776546_40776629_40776734_40778261_40778397_40781308_40781418_40785058_40785115_40786447_40786593_40788378_40788493_40789603_40789845_40791523_40791568_40793848_40793941_40801075
transcript_83889.known	chr3	-	1032	3	FSM	ENSMUSG00000097583.3	ENSMUST00000181813.2	1032	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAATAAAAGGAGAAAAGG	6729	False	NA	NA	False	NA	NA	NA	40848558	40840331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_40841144_40841989_40842034_40848382
transcript_8389.nic	chr10	+	1722	5	ISM	ENSMUSG00000037608.17	ENSMUST00000186100.7	3231	13	-108	14770	-105	2901	5prime_fragment	FALSE	canonical	3	760	junction_3	119.710066410474	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATAAACTGAAAGAGACTG	2685	False	NA	46	True	ATTAAA	-40	NA	20188109	20201242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885
transcript_83891.known	chr3	+	1263	1	FSM	ENSMUSG00000107741.3	ENSMUST00000203124.2	1263	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATTCTTCCTGTGTTA	472	False	NA	NA	False	AATAAA	-17	NA	40801254	40802517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_40801300_40802500
transcript_83892.known	chr3	-	3631	1	FSM	ENSMUSG00000097583.3	ENSMUST00000203407.2	3631	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAAAATGTATGCTA	6659	False	NA	NA	False	NA	NA	NA	40848628	40844997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_40845000_40848600
transcript_83893.nic	chr3	+	1089	4	ISM	ENSMUSG00000025762.17	ENSMUST00000048490.13	2497	10	-59	13761	-59	-14	5prime_fragment	FALSE	canonical	3	78	junction_1	6.34209919681348	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAGAAGATTGAAAAAAG	9958	False	NA	NA	False	AATAAA	-25	NA	40904203	40918456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_40905120_40916042_40916102_40916603_40916664_40918402
transcript_83894.known	chr3	-	3007	3	FSM	ENSMUSG00000049940.8	ENSMUST00000058578.8	3007	3	0	0	0	0	multi-exon	FALSE	canonical	3	569	junction_2	17	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTACATTTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	41037481	41020760	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_41023160_41024714_41024871_41037029
transcript_8390.nic	chr10	+	1708	5	ISM	ENSMUSG00000037608.17	ENSMUST00000186100.7	3231	13	-5	14681	-2	2990	5prime_fragment	FALSE	canonical	3	760	junction_3	119.710066410474	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACAGTGAAGAAAGAAGTG	2788	False	NA	5	True	NA	NA	NA	20188212	20201331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885
transcript_83903.nnic	chr3	-	1238	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	504	2	NA	NA	-30	-2	multi-exon	FALSE	canonical	3	17	junction_1	26.5455583227527	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCAAGCTCTCCTTCGT	NA	False	NA	-12	True	AGTAAA	-14	NA	41447657	41432013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447522
transcript_83908.known	chr3	-	2161	2	FSM	ENSMUSG00000097639.3	ENSMUST00000199155.2	2161	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTACCTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	41447625	41442113	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_41444172_41447522
transcript_83909.known	chr3	-	986	2	FSM	ENSMUSG00000097639.3	ENSMUST00000181833.2	986	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCTCCAAATCCTGAA	NA	False	NA	-3	True	NA	NA	NA	41447627	41443238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_41444172_41447574
transcript_83915.nnic	chr3	-	758	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-13	14036	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	43.6942501938184	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCTTTGGTCATGGTG	NA	False	NA	-1	True	NA	NA	NA	41482922	41461645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477565_41482833
transcript_83916.nnic	chr3	-	890	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-30	14036	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	46.618129520606	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCTTTGGTCATGGTG	NA	False	NA	-1	True	NA	NA	NA	41482939	41461645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477680_41482833
transcript_83920.nnic	chr3	-	541	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	5.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482922	41476638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_41476891_41477364_41477565_41482833
transcript_83921.known	chr3	-	643	3	FSM	ENSMUSG00000106223.2	ENSMUST00000199633.2	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	18	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482909	41476638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_41476891_41477364_41477680_41482833
transcript_83924.nic	chr3	-	643	3	NIC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-30	-16	combination_of_known_junctions	FALSE	canonical	3	120	junction_2	9.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCCGGTTGATGTCAATG	NA	False	NA	-18	True	AATAAA	-11	NA	41482939	41476654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_41476891_41477378_41477680_41482833
transcript_8393.nic	chr10	+	772	4	ISM	ENSMUSG00000037608.17	ENSMUST00000186100.7	3231	13	-21	16904	-18	767	5prime_fragment	FALSE	canonical	3	760	junction_3	128.608795275526	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAGGGGGAACCCCAAGA	2772	False	NA	NA	False	AAAACA	-11	NA	20188196	20199108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708
transcript_83936.known	chr3	+	5481	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTGTTGAAATCTGCTT	NA	False	NA	19	True	AATAAA	-28	NA	41510165	41571299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
transcript_83953.known	chr3	+	2896	11	FSM	ENSMUSG00000025764.15	ENSMUST00000170711.8	2896	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	240.748437170421	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAATAGGGGCAAGCAAAT	NA	False	NA	NA	False	NA	NA	NA	41518041	41568493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_41518352_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
transcript_83954.known	chr3	+	4790	11	FSM	ENSMUSG00000025764.15	ENSMUST00000168086.7	4790	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	235.78218762239	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	41519288	41570547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_41519439_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
transcript_83977.known	chr3	+	3327	9	FSM	ENSMUSG00000025764.15	ENSMUST00000191952.2	3327	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	264.128164912415	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTGTATTAACTCTTT	NA	False	NA	2	True	AATAAA	-14	NA	41519354	41561130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_41519446_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904
transcript_8398.known	chr10	+	1991	7	FSM	ENSMUSG00000019992.9	ENSMUST00000169712.3	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_5	12.6150263134442	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTGAGTATTTAACAT	NA	False	NA	7	True	AATAAA	-14	NA	20223515	20237050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_20223670_20224080_20224182_20228569_20228675_20229112_20229226_20229775_20230012_20233000_20233513_20236280
transcript_83981.known	chr3	-	3005	21	FSM	ENSMUSG00000059834.13	ENSMUST00000026866.15	3005	21	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_17	7.74919350642375	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTGTCATGTATTTGA	NA	False	NA	NA	False	AATAAA	-18	NA	41696949	41581154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_41581670_41583952_41584049_41586087_41586167_41601879_41602077_41611638_41611832_41616006_41616153_41618386_41618462_41621545_41621618_41625819_41625919_41629762_41629941_41636130_41636223_41636716_41636808_41657820_41657892_41663903_41663970_41665517_41665641_41672163_41672300_41681527_41681584_41684725_41684799_41685295_41685355_41688602_41688671_41696429
transcript_83985.known	chr3	+	3574	7	FSM	ENSMUSG00000025766.15	ENSMUST00000146165.8	3574	7	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_1	8.72576007513895	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTGCTGTGTTTCA	NA	False	NA	12	True	ATTAAA	-22	NA	41697052	41713374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
transcript_83988.known	chr3	+	3452	6	FSM	ENSMUSG00000025766.15	ENSMUST00000108065.9	3452	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	11.0199818511647	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTCATATTTTGTGC	NA	False	NA	3	True	ATTAAA	-13	NA	41697048	41713365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_41697125_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
transcript_83991.known	chr3	-	723	2	FSM	ENSMUSG00000090919.7	ENSMUST00000195436.2	723	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCGTAAGGATCGGGA	NA	False	NA	NA	False	NA	NA	NA	46402376	46401126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_46401725_46402251
transcript_83992.known	chr3	-	593	2	FSM	ENSMUSG00000037910.3	ENSMUST00000036023.3	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTTTAGATGTGTCT	NA	False	NA	0	True	AATAAA	-42	NA	48563537	48560166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_48560355_48563132
transcript_83993.known	chr3	-	9223	12	FSM	ENSMUSG00000027737.11	ENSMUST00000029297.6	9223	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	2.75740925238238	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGGCGCTTTTTATGAT	8831	False	NA	NA	False	AATAAA	-16	NA	50398060	50319386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_50326816_50332012_50332191_50333483_50333634_50335420_50335518_50336323_50336428_50338492_50338617_50372436_50372482_50378490_50378591_50382099_50382226_50389797_50389914_50393237_50393365_50397433
transcript_83994.known	chr3	+	3059	3	FSM	ENSMUSG00000023087.16	ENSMUST00000023849.15	3059	3	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	3.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGTCTAAAAGGAATCTG	9146	False	NA	27	True	AATAAA	-36	NA	51131867	51159065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_51132709_51155225_51155496_51157117
transcript_84005.known	chr3	-	3353	10	FSM	ENSMUSG00000037174.19	ENSMUST00000062009.14	3353	10	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_9	81.5267887503894	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTGGTTTTGGTCTCT	NA	False	NA	-7	True	AATATA	-13	NA	51248065	51162651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51215470_51215637_51230642_51230873_51233368_51233457_51247834
transcript_84007.known	chr3	-	5919	10	FSM	ENSMUSG00000037174.19	ENSMUST00000194641.6	5919	10	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_9	82.9231385897823	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATTGTGATTTCTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	51248084	51160140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51215470_51215637_51230642_51230873_51233368_51233457_51247834
transcript_84017.known	chr3	-	2514	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_6	34.1987654098149	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTACCTAGCACAGTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	51184935	51163085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51184625
transcript_84018.known	chr3	-	2611	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108053.9	2611	7	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	57.3626378596925	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTACCTAGCACAGTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	51184996	51163085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51184625
transcript_8402.known	chr10	+	4851	24	FSM	ENSMUSG00000019986.18	ENSMUST00000105525.12	4851	24	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	6.91700734047638	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCTGGTTTCTTTCTTTT	NA	False	NA	16	True	AATAAA	-21	NA	20828445	20956328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_20828652_20835510_20835980_20838963_20839134_20839571_20839792_20841415_20841609_20841824_20841921_20844886_20845073_20846747_20846901_20847922_20848056_20852895_20853020_20855278_20855509_20857222_20857330_20860203_20860323_20862868_20863000_20864442_20864584_20876404_20876605_20883650_20883678_20893811_20893933_20917084_20917141_20930879_20931043_20934051_20934150_20948441_20948501_20950273_20950377_20954982
transcript_84023.known	chr3	-	1083	7	FSM	ENSMUSG00000037174.19	ENSMUST00000183338.7	1083	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	55.8114384930783	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGAGTGTGCGTCACTTG	NA	False	NA	NA	False	AAAAAG	-7	NA	51248079	51172290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51172428_51174173_51174288_51207203_51207307_51215470_51215637_51230642_51230873_51233368_51233457_51247834
transcript_84028.nic	chr3	-	669	3	ISM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	-108	9205	-47	0	5prime_fragment	FALSE	canonical	3	154	junction_2	12	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGAGTGTGCGTCACTTG	NA	False	NA	NA	False	AAAAAG	-7	NA	51185043	51172290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_51172428_51174173_51174288_51184625
transcript_84030.known	chr3	-	1409	4	FSM	ENSMUSG00000037161.15	ENSMUST00000108046.8	1409	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.1604202613295	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303947	51295832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303648
transcript_84031.known	chr3	-	1232	4	FSM	ENSMUSG00000037161.15	ENSMUST00000038154.12	1232	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_2	9.84321537348893	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303969	51295832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847
transcript_84032.known	chr3	-	1246	5	FSM	ENSMUSG00000037161.15	ENSMUST00000141156.3	1246	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	85.5847533150619	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51304159	51295832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847_51303916_51304091
transcript_84033.known	chr3	-	1249	4	FSM	ENSMUSG00000037152.12	ENSMUST00000038108.12	1249	4	0	0	0	0	multi-exon	FALSE	canonical	3	5471	junction_1	421.328322755017	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAGGGTGGAACCTTTA	NA	False	NA	NA	False	NA	NA	NA	51316409	51312097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51313041_51314756_51314834_51315565_51315670_51316284
transcript_84035.known	chr3	-	315	4	FSM	ENSMUSG00000037152.12	ENSMUST00000193279.2	315	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2986.95545478818	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCCTCAGTGACGGATGT	NA	False	NA	-136	True	NA	NA	NA	51316385	51313002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_51313036_51314756_51314834_51315565_51315670_51316284
transcript_84037.known	chr3	+	6090	20	FSM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTCACTTTTCCCTT	NA	False	NA	3	True	AATAAA	-20	NA	51323436	51383406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
transcript_84041.known	chr3	+	7480	20	FSM	ENSMUSG00000063273.12	ENSMUST00000193266.6	7480	20	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCCCTGCTGGCCTCCAA	NA	False	NA	NA	False	NA	NA	NA	51322568	51383928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
transcript_84048.known	chr3	+	3492	2	FSM	ENSMUSG00000027739.10	ENSMUST00000054387.8	3492	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAAATCTGATATTTAG	NA	False	NA	NA	False	AAGAAA	-1	NA	51391386	51403653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_51392002_51400776
transcript_84051.known	chr3	+	8665	3	FSM	ENSMUSG00000044167.7	ENSMUST00000053764.7	8665	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	52175756	52260642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_52176844_52252459_52253812_52254416
transcript_84053.known	chr3	-	3182	19	FSM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_7	14.5610676585896	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATACATGTCATGTGTGC	NA	False	NA	NA	False	ATTAAA	-20	NA	52924658	52889295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52900860_52900993_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
transcript_84058.known	chr3	-	1504	13	FSM	ENSMUSG00000027742.14	ENSMUST00000192788.6	1504	13	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	16.9304131340286	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATTAAAAAAAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	52924631	52903220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
transcript_84059.known	chr3	+	2108	4	FSM	ENSMUSG00000048332.14	ENSMUST00000059562.14	2108	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.16024689946929	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTGAGTCACCGAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	52948948	53169100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_52949196_52950539_52951113_53139150_53139250_53167911
transcript_84060.known	chr3	-	5047	7	FSM	ENSMUSG00000042997.14	ENSMUST00000056749.14	5047	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	5.77350269189626	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGCTTTATTCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	53370753	53356003	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_53360071_53360962_53361076_53363846_53363939_53365905_53366107_53369052_53369201_53369732_53369886_53370480
transcript_84062.known	chr3	-	4885	6	FSM	ENSMUSG00000042997.14	ENSMUST00000130348.2	4885	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	7.03135833249878	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTATTGGCTTTATT	NA	False	NA	NA	False	AATAAA	-12	NA	53370744	53356008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_53360071_53360962_53361076_53363846_53363939_53365905_53366107_53369732_53369886_53370480
transcript_84066.known	chr3	+	4472	13	FSM	ENSMUSG00000049504.13	ENSMUST00000058577.5	4472	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	9.75071222469871	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACTATAGAAGTGTTTT	NA	False	NA	18	True	AATAAA	-14	NA	53371086	53389176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904_53380989_53382108_53382188_53382735_53382832_53383077_53383123_53384903_53386588_53386980_53387132_53387932
transcript_84067.known	chr3	+	1519	7	FSM	ENSMUSG00000049504.13	ENSMUST00000141418.2	1519	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	7.95124029458437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGGTTTCAAAGAACAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	53371352	53381600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904
transcript_84069.known	chr3	+	940	1	FSM	ENSMUSG00000049504.13	ENSMUST00000198186.2	940	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53371227	53372167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_53371200_53372200
transcript_84074.known	chr3	-	457	1	FSM	ENSMUSG00000105879.2	ENSMUST00000198872.2	457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACTTCTCATTATTTT	NA	False	NA	NA	False	AAGAAA	-29	NA	53600299	53599842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_53599800_53600300
transcript_84075.known	chr3	-	4890	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACAGTTGATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	53771251	53760796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
transcript_84081.known	chr3	+	1488	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	552	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	5440	False	NA	NA	False	NA	NA	NA	54388858	54390346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_54388900_54390300
transcript_8409.known	chr10	+	1375	1	FSM	ENSMUSG00000019986.18	ENSMUST00000214745.2	1375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACCTGTGATGTGTGATT	NA	False	NA	NA	False	CATAAA	-13	NA	20828523	20829898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_20828500_20829900
transcript_84094.nnic	chr3	+	3161	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	226	junction_20	93.1009504905751	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600181	54636184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
transcript_84095.nnic	chr3	+	3125	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_23	121.920310572839	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600181	54636184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
transcript_84096.known	chr3	+	2751	27	FSM	ENSMUSG00000027751.14	ENSMUST00000197502.5	2751	27	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_20	89.4210256174979	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTACATACCAATCGCAG	NA	False	NA	-92	True	NA	NA	NA	54600227	54636057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
transcript_84097.nic	chr3	+	2888	27	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_23	119.269081933775	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600181	54636184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
transcript_8410.known	chr10	-	3693	16	FSM	ENSMUSG00000019982.16	ENSMUST00000188495.8	3693	16	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_11	4.59951688284276	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGATGTCTCTCGATT	NA	False	NA	-4	True	AATAAA	-22	NA	21036804	21000833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_21002189_21015191_21015300_21016465_21016577_21017657_21017784_21017870_21017986_21018860_21018992_21020867_21021225_21022084_21022340_21024230_21024336_21024676_21024758_21026204_21026440_21028334_21028556_21028790_21028884_21030582_21030655_21032238_21032357_21036594
transcript_84107.nnic	chr3	+	3066	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_1	142.137304440493	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600275	54636184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
transcript_84108.nic	chr3	+	2865	27	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	116.599933013266	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600275	54636184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
transcript_84109.nic	chr3	+	2829	27	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	139.954599570105	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600275	54636184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
transcript_8411.known	chr10	-	3074	15	FSM	ENSMUSG00000019982.16	ENSMUST00000020158.9	3074	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	4.58257569495584	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTTGTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	21036883	21001174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_21002189_21015191_21015300_21016465_21016577_21017657_21017784_21017870_21017986_21018860_21018992_21022084_21022340_21024230_21024336_21024676_21024758_21026204_21026440_21028334_21028556_21028790_21028884_21030582_21030655_21032238_21032357_21036594
transcript_84138.nnic	chr3	+	2964	26	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	117.502789754116	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600278	54636184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_54600524_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
transcript_84172.known	chr3	+	1866	15	FSM	ENSMUSG00000027751.14	ENSMUST00000200450.2	1866	15	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	151.776554345457	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGTAGAG	NA	False	NA	NA	False	NA	NA	NA	54600278	54620173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_54600303_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512
transcript_84176.known	chr3	-	1300	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	0	0	0	0	multi-exon	FALSE	canonical	3	1645	junction_10	187.140588863026	1180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54642814	54636098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
transcript_84198.known	chr3	-	2316	8	FSM	ENSMUSG00000027752.16	ENSMUST00000150923.8	2316	8	0	0	0	0	multi-exon	FALSE	canonical	3	1645	junction_7	192.173603487969	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	-16	True	AATAAA	-23	NA	54642458	54636102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
transcript_84206.known	chr3	-	412	7	FSM	ENSMUSG00000027752.16	ENSMUST00000153224.2	412	7	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	771.083581000717	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGGCAAGGTAAGAGC	NA	False	NA	NA	False	AAGAAA	-16	NA	54642467	54639413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_54639448_54639532_54639651_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
transcript_84216.known	chr3	+	3753	26	FSM	ENSMUSG00000027751.14	ENSMUST00000200439.2	3753	26	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_19	108.108641652737	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	35	True	AATACA	-21	NA	54600533	54636184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624058_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
transcript_84218.nnic	chr3	+	1252	10	NNC	ENSMUSG00000036632.10	novel	1471	10	NA	NA	-1074	-361	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	151.571113570943	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCTGCCTTTGTATATTC	NA	False	NA	18	True	AATAAA	-22	NA	54641885	54656855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_54642139_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
transcript_84224.known	chr3	+	2972	10	FSM	ENSMUSG00000036632.10	ENSMUST00000141191.8	2972	10	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	150.752270011367	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCTGTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	54642979	54658739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_54643071_54646202_54646373_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
transcript_84231.known	chr3	+	726	3	FSM	ENSMUSG00000036632.10	ENSMUST00000143387.2	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_2	17.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGTCTTAAAAAAATTTAA	NA	False	NA	NA	False	ATTAAA	-12	NA	54642993	54647159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_54643071_54646202_54646375_54646682
transcript_84233.known	chr3	-	2162	3	FSM	ENSMUSG00000036615.8	ENSMUST00000044373.6	2162	3	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_1	17.5	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTCTGCTGTACTTATTT	NA	False	NA	0	True	ATTAAA	-21	NA	54715212	54710535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_54711997_54712780_54712889_54714619
transcript_84242.known	chr3	+	3981	9	FSM	ENSMUSG00000036580.16	ENSMUST00000118118.8	3981	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	69.2431178890726	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCTCAGATGTATTCAC	NA	False	NA	16	True	AATAAA	-17	NA	55019586	55044738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_55019913_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
transcript_84244.known	chr3	+	3770	9	FSM	ENSMUSG00000036580.16	ENSMUST00000044116.14	3770	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	65.469339197826	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGATGTATTCACTGGAC	NA	False	NA	21	True	AATAAA	-22	NA	55019528	55044743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
transcript_84249.known	chr3	+	3567	8	FSM	ENSMUSG00000036580.16	ENSMUST00000107971.9	3567	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	57.8710741604975	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGGGCCTCAGATGT	NA	False	NA	10	True	AATAAA	-11	NA	55019549	55044732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
transcript_84258.known	chr3	+	2364	11	FSM	ENSMUSG00000027794.5	ENSMUST00000029369.5	2364	11	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_8	29.6317397396778	630	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTGCAAGGAATCTGAT	NA	False	NA	20	True	AATAAA	-22	NA	55089448	55117378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_55089536_55096541_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754_55111877_55115013_55115271_55116307
transcript_8426.known	chr10	+	2733	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	0	0	0	0	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	1186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGCAAAAATGTGT	NA	False	NA	12	True	AATAAA	-14	NA	21171931	21244782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
transcript_84268.known	chr3	-	4697	7	FSM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	0	0	0	0	multi-exon	TRUE	canonical	3	192	junction_3	19.06494747494	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGGCCTTTGTTTCTGTC	NA	False	NA	-6	True	AATAAA	-17	NA	57483249	57363069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483021
transcript_84272.known	chr3	-	2992	5	FSM	ENSMUSG00000036513.16	ENSMUST00000160959.8	2992	5	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_3	10.5593560409714	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACGAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	57559136	57551769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_57554298_57557462_57557637_57558111_57558195_57558842_57558921_57559007
transcript_84274.known	chr3	-	892	4	FSM	ENSMUSG00000036513.16	ENSMUST00000041954.10	892	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	244.439949453621	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	-11	True	AATAAA	-19	NA	57559129	57553779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_57554298_57557462_57557637_57558842_57558921_57559007
transcript_84275.known	chr3	-	477	1	FSM	ENSMUSG00000104623.2	ENSMUST00000197077.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	NA	False	NA	NA	False	NA	NA	NA	57625710	57625233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_57625200_57625700
transcript_84279.nnic	chr3	+	2413	11	NNC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	-4	-288	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	55.1311164407179	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTATTGTTCTGGTGAA	NA	False	NA	22	True	AATAAA	-22	NA	57643491	57742252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_57643622_57655311_57655456_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
transcript_84282.known	chr3	+	2678	10	FSM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	27.8053196793192	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCTTTGTTGAGTTTT	NA	False	NA	NA	False	AAGAAA	-42	NA	57643482	57742652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
transcript_84284.known	chr3	+	2573	10	FSM	ENSMUSG00000036503.14	ENSMUST00000200497.5	2573	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_9	52	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTGTTGAGTTTTTT	NA	False	NA	NA	False	AAGAAA	-44	NA	57643502	57742654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740993
transcript_84287.known	chr3	+	2027	9	FSM	ENSMUSG00000036503.14	ENSMUST00000198214.5	2027	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	54.9816730829465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCTTTTAATTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	57643505	57733721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57732522
transcript_84288.known	chr3	+	1062	9	FSM	ENSMUSG00000036503.14	ENSMUST00000199041.2	1062	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_8	24.8281594162757	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTCTTCATACAATAGT	NA	False	NA	NA	False	AATAAA	-23	NA	57643540	57740653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384
transcript_84293.known	chr3	-	2342	3	FSM	ENSMUSG00000027805.17	ENSMUST00000066882.10	2342	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	7	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGACTCCTGTTTTTATTA	NA	False	NA	4	True	AATAAA	-23	NA	57755500	57749315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_57750736_57752594_57752788_57754771
transcript_84295.known	chr3	+	9799	4	FSM	ENSMUSG00000027806.10	ENSMUST00000099090.7	9799	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	37.7447568102732	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAAGTGTTTTCTTCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	58322135	58374204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_58325035_58335648_58335721_58366751_58366804_58367428
transcript_84301.known	chr3	+	4659	3	FSM	ENSMUSG00000027806.10	ENSMUST00000199164.2	4659	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	10.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGGCTCTATATGTGTT	NA	False	NA	18	True	ATTAAA	-18	NA	58322140	58369141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_58325035_58366751_58366804_58367428
transcript_84305.known	chr3	+	3022	1	FSM	ENSMUSG00000027806.10	ENSMUST00000199784.2	3022	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	58323298	58326320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_58323300_58326300
transcript_84313.known	chr3	+	2299	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	73.3195163601748	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433241	58464922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
transcript_84317.known	chr3	+	1945	13	FSM	ENSMUSG00000027810.15	ENSMUST00000154219.8	1945	13	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_3	220.750408958977	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433476	58464922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
transcript_84319.nic	chr3	+	2375	12	ISM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	-530	1857	-530	0	5prime_fragment	TRUE	canonical	3	611	junction_6	64.5612016642393	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAGGTGAGGCTTGAAT	NA	False	NA	NA	False	NA	NA	NA	58432711	58463065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955
transcript_84320.nic	chr3	+	1702	11	ISM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	-4	4856	-4	1919	5prime_fragment	FALSE	canonical	3	611	junction_6	65.6350516111628	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAGGAAGCATGAAGCTA	NA	False	NA	NA	False	AAAACA	-12	NA	58433237	58460066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989
transcript_84323.known	chr3	-	4611	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	0	0	0	0	multi-exon	FALSE	canonical	3	847	junction_1	36.5	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTAGGAACTGGTGGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	58433313	58427237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_58431290_58432503_58432580_58432830
transcript_84328.known	chr3	+	3157	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGCTTTGTGAAAATG	NA	False	NA	15	True	AATAAA	-18	NA	58484056	58500554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
transcript_84331.known	chr3	-	2511	2	FSM	ENSMUSG00000036432.9	ENSMUST00000070368.8	2511	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCTGCTTGAATCGTAT	NA	False	NA	0	True	AATAAA	-30	NA	58599821	58582358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_58583865_58598816
transcript_84333.known	chr3	+	636	1	FSM	ENSMUSG00000059776.8	ENSMUST00000079761.8	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	False	NA	NA	False	AAAAAG	-44	NA	58894590	58895226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_58894600_58895200
transcript_84339.known	chr3	+	3747	16	FSM	ENSMUSG00000056476.14	ENSMUST00000040846.15	3747	16	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.79239004088744	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTTTATTCATTACTAAT	NA	False	NA	NA	False	AATAAA	-16	NA	58913245	59002309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_58913494_58914294_58914522_58938966_58939072_58944980_58945173_58946586_58946620_58949674_58949835_58975662_58975833_58979235_58979347_58980505_58980776_58983255_58983406_58984115_58984216_58984453_58984591_58990373_58990506_58993695_58993823_58998827_58999043_59000939
transcript_84343.known	chr3	+	182	2	FSM	ENSMUSG00000027694.10	ENSMUST00000193411.2	182	2	0	0	0	0	multi-exon	FALSE	canonical	3	1840	junction_1	0	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATCTATGAAAACCGAAT	NA	False	NA	NA	False	NA	NA	NA	60784434	60784735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_60784468_60784586
transcript_84344.known	chr3	+	2203	1	FSM	ENSMUSG00000027765.7	ENSMUST00000193943.2	2203	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATTTGGCATAGTATA	NA	False	NA	NA	False	AATAAA	-12	NA	60910219	60912422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_60910200_60912400
transcript_84345.known	chr3	+	6793	1	FSM	ENSMUSG00000036894.4	ENSMUST00000049064.4	6793	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCCTGAGTTGTTTGGCT	NA	False	NA	NA	False	AATAAA	-41	NA	61269058	61275851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_61269100_61275900
transcript_84346.known	chr3	+	5638	14	FSM	ENSMUSG00000036885.15	ENSMUST00000079300.13	5638	14	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_11	5.33715346421589	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTAGCATTATAGAAGA	NA	False	NA	NA	False	AATAAA	-20	NA	62245764	62369642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_62247995_62248764_62248805_62252566_62252713_62285008_62285066_62288251_62288413_62326969_62327123_62330921_62331052_62334009_62334085_62336301_62336392_62339908_62340064_62355513_62355724_62365793_62365862_62367030_62367136_62367624
transcript_84348.known	chr3	-	5620	25	FSM	ENSMUSG00000027770.6	ENSMUST00000029336.6	5620	25	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_17	54.5870704827516	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTGTCATGTTTTAAC	NA	False	NA	0	True	NA	NA	NA	62414425	62375433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_62378169_62378742_62378896_62379419_62379541_62380148_62380240_62380350_62380451_62382690_62382775_62384703_62384791_62384926_62385101_62386740_62386840_62388222_62388341_62391551_62391696_62392375_62392441_62394430_62394487_62395550_62395639_62395965_62396069_62396318_62396460_62399771_62399854_62401150_62401318_62401764_62401840_62402878_62402959_62404149_62404321_62405510_62405550_62408254_62408490_62409394_62409520_62414138
transcript_84351.nic	chr3	-	1390	10	ISM	ENSMUSG00000027770.6	ENSMUST00000029336.6	5620	25	-41	20938	-41	-4761	5prime_fragment	FALSE	canonical	3	420	junction_2	33.7836252248531	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCATCTATAAGGAACG	NA	False	NA	NA	False	AATAGA	-19	NA	62414466	62396371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_62396460_62399771_62399854_62401150_62401318_62401764_62401840_62402878_62402959_62404149_62404321_62405510_62405550_62408254_62408490_62409394_62409520_62414138
transcript_84353.nic	chr3	-	543	3	ISM	ENSMUSG00000027770.6	ENSMUST00000029336.6	5620	25	-41	32966	-41	-3046	5prime_fragment	FALSE	canonical	3	475	junction_1	39	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATTTAGGATCACAGACA	NA	False	NA	NA	False	AAGAAA	-42	NA	62414466	62408399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_62408490_62409394_62409520_62414138
transcript_84368.nic	chr3	+	2689	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-82	-588	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGGGAGCCTACGATCT	NA	False	NA	NA	False	ATTAAA	-17	NA	63202786	63287929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_84369.nic	chr3	+	3216	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCATTGAATATTGAAGTT	NA	False	NA	5	True	AATAAA	-15	NA	63202847	63288517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_84370.nic	chr3	+	3540	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-21	-203	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTAGGCCTGTGTGCACG	NA	False	NA	7	True	AATAAA	-18	NA	63202847	63288841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_84371.nic	chr3	+	3725	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTACAGTCCTTATTTT	NA	False	NA	11	True	TATAAA	-15	NA	63202865	63289044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_84372.nic	chr3	+	4373	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-23	628	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATCCTTATCTTTTTCC	NA	False	NA	30	True	CATAAA	-34	NA	63202845	63289672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_84374.nic	chr3	+	5808	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	4	2090	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTGTGCTTTGCATTT	NA	False	NA	19	True	NA	NA	NA	63202872	63291134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_84375.known	chr3	+	3782	23	FSM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	72.8286793023574	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTACAGTCCTTATTTT	NA	False	NA	11	True	TATAAA	-15	NA	63203515	63289044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_84393.nic	chr3	+	1014	9	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	11	-4477	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	55.9797675504284	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAATGTAACACATATT	NA	False	NA	NA	False	AATAAA	-23	NA	63202879	63247563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
transcript_84399.known	chr3	-	1640	5	FSM	ENSMUSG00000048581.13	ENSMUST00000061706.7	1640	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	6.68487097856047	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTGAGATCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	63836893	63822104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_63823160_63827621_63827783_63832754_63832903_63834684_63834745_63836677
transcript_844.known	chr1	-	1705	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	5.33853912601566	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCTCTCATTTTATTTT	7204	False	NA	1	True	AATAAA	-23	NA	34478753	34475750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
transcript_84401.known	chr3	-	3150	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	11.3666177907063	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGCTGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	63872189	63849750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
transcript_84402.nnic	chr3	-	2834	6	NNC	ENSMUSG00000027822.17	novel	3150	6	NA	NA	46	0	intron_retention	FALSE	canonical	2	4	junction_1	27.1470072015314	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGCTGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	63872041	63849750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_63850838_63852154_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
transcript_84413.known	chr3	+	8105	16	FSM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	0	0	0	0	multi-exon	FALSE	canonical	3	954	junction_10	99.4709114375767	1062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCATCTTGTGGTTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	63883526	63930000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
transcript_84426.nic	chr3	+	1223	8	ISM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	-30	29260	-30	-29260	5prime_fragment	FALSE	canonical	3	1111	junction_7	37.9806610295937	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTGGTGATACTTTCGTT	NA	False	NA	NA	False	ATTAAA	-33	NA	63883496	63900740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611
transcript_84433.known	chr3	-	2957	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	640	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTTCTGTAATTCT	2716	False	NA	-1	True	ATTAAA	-20	NA	65300044	65287075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
transcript_84434.known	chr3	+	4191	6	FSM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	12.4835892274618	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATTTCAGTGTAATGAAA	NA	False	NA	NA	False	ATTAAA	-16	NA	65435830	65462939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_65436054_65438644_65439606_65453627_65453797_65454945_65455107_65459956_65460233_65460538
transcript_84437.nic	chr3	+	1798	5	ISM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	-9	2708	-9	178	5prime_fragment	FALSE	canonical	3	108	junction_4	10.4253297309965	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGAGTCAGAAGTATGAAA	NA	False	NA	NA	False	TATAAA	-2	NA	65435821	65460231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_65436054_65438644_65439606_65453627_65453797_65454945_65455107_65459956
transcript_84442.nic	chr3	+	2125	2	ISM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	-31	22424	-31	-14503	5prime_fragment	FALSE	canonical	3	135	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGTTTGAATTCTCAA	NA	False	NA	NA	False	NA	NA	NA	65435799	65440515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_65436054_65438644
transcript_84443.known	chr3	+	2461	3	FSM	ENSMUSG00000074579.15	ENSMUST00000099075.4	2461	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTGTGTGTAATTATTG	NA	False	NA	NA	False	AATAAA	-14	NA	65573648	65593600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_65573733_65576510_65576600_65591312
transcript_84447.known	chr3	-	2229	12	FSM	ENSMUSG00000027829.16	ENSMUST00000129002.8	2229	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	57.4382888393569	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTCAAATATCTTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	65865583	65853571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65862550_65862698_65864273_65864384_65864921_65864997_65865228
transcript_84448.known	chr3	-	1981	12	FSM	ENSMUSG00000027829.16	ENSMUST00000135719.8	1981	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_8	51.1618724254952	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTTTTACAAGGAAATA	NA	False	NA	NA	False	TTTAAA	-44	NA	65865453	65853615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65862624_65862698_65864273_65864384_65864921_65864997_65865228
transcript_84452.known	chr3	-	2169	11	FSM	ENSMUSG00000027829.16	ENSMUST00000029416.14	2169	11	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_8	39.2388837761728	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTCAAATATCTTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	65865670	65853571	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65864273_65864384_65864921_65864997_65865228
transcript_84455.known	chr3	-	3414	10	FSM	ENSMUSG00000027829.16	ENSMUST00000142153.8	3414	10	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_7	40.7042934611675	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATTAGGAAATGATTTAT	NA	False	NA	NA	False	CATAAA	-11	NA	65865584	65853929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65857966_65858854_65858976_65864273_65864384_65864921_65864997_65865228
transcript_84459.nic	chr3	-	1158	9	ISM	ENSMUSG00000027829.16	ENSMUST00000135719.8	1981	12	-242	2167	-25	146	5prime_fragment	FALSE	canonical	3	56	junction_5	51.7226679029611	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCCTTACAGGAAGCCAA	NA	False	NA	NA	False	AAAAAG	-5	NA	65865695	65855782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65862624_65862698_65864273_65864384_65864921_65864997_65865228
transcript_84460.nic	chr3	-	1085	8	ISM	ENSMUSG00000027829.16	ENSMUST00000029416.14	2169	11	-25	2211	-25	146	5prime_fragment	FALSE	canonical	3	90	junction_5	39.831276809122	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCCTTACAGGAAGCCAA	NA	False	NA	NA	False	AAAAAG	-5	NA	65865695	65855782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65864273_65864384_65864921_65864997_65865228
transcript_84465.known	chr3	+	3224	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGACTGCTTCCTCC	NA	False	NA	15	True	AATAAA	-15	NA	66893004	67265728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
transcript_84478.nic	chr3	+	802	7	ISM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	-20	67987	-18	-63314	5prime_fragment	FALSE	canonical	3	299	junction_4	30.8148593304522	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGGTAAAAATGCATG	NA	False	NA	NA	False	ATTAAA	-41	NA	66892984	67197741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679
transcript_84480.known	chr3	+	3213	10	FSM	ENSMUSG00000034544.18	ENSMUST00000161726.2	3213	10	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	109.678092391404	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGACTGCTTCCTCCC	NA	False	NA	16	True	AATAAA	-16	NA	66893299	67265729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_66893423_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
transcript_84484.known	chr3	+	3136	4	FSM	ENSMUSG00000034544.18	ENSMUST00000162620.9	3136	4	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	33.0689515339624	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTGTACATTGGACTCT	NA	False	NA	NA	False	AATAAA	-13	NA	66893017	66992560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868
transcript_84489.known	chr3	+	1114	7	FSM	ENSMUSG00000048416.16	ENSMUST00000077916.12	1114	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.04145188432738	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGTGGTTAAATTGGT	NA	False	NA	1	True	AATAAA	-14	NA	67281429	67307331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_67281596_67291883_67292032_67300224_67300309_67301267_67301397_67302584_67302745_67305113_67305244_67307034
transcript_84493.known	chr3	+	4078	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	154.691388272057	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTTCTTCCTGCTTCA	NA	False	NA	11	True	ATTAAA	-25	NA	67337428	67383862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
transcript_84500.known	chr3	-	1112	6	FSM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_4	5.56417109729742	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGTCTAATTGCATTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	67371259	67365330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_67365661_67365926_67365990_67368254_67368392_67368644_67368823_67369691_67369755_67370918
transcript_84502.known	chr3	+	1971	14	FSM	ENSMUSG00000027774.17	ENSMUST00000161009.7	1971	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	187.818305754075	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTCTTTCAAGCCATT	NA	False	NA	NA	False	NA	NA	NA	67337448	67366138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67365891
transcript_84504.known	chr3	+	3011	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	0	0	0	multi-exon	TRUE	canonical	3	661	junction_4	69.2886394407882	346	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAGGATAAATGACTGC	NA	False	NA	19	True	AATAAA	-20	NA	67490073	67511570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
transcript_84514.known	chr3	+	2369	11	FSM	ENSMUSG00000102422.2	ENSMUST00000182006.4	2369	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	227.547555469181	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCTTTTGCTCACTAACA	NA	False	NA	24	True	AATAAA	-26	NA	67799564	68533799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_67799655_67948526_67948592_67954570_67954652_67962595_67962732_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_84517.known	chr3	+	2059	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182532.8	2059	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	163.233149894529	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGCACTGGCTGTGTC	NA	False	NA	39	True	AATAAA	-41	NA	68375515	68533814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_68375563_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_84518.nic	chr3	+	2373	8	NIC	ENSMUSG00000027777.16	novel	1298	6	NA	NA	-264	0	combination_of_known_junctions	FALSE	canonical	2	19	junction_1	160.899004956272	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACGTCCTTTTGCTCACTA	NA	False	NA	21	True	AATAAA	-23	NA	68400559	68533796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_68400939_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_84522.known	chr3	+	2156	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	72.6321455791344	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACGTCCTTTTGCTCACTA	NA	False	NA	21	True	AATAAA	-23	NA	68401540	68533796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_68401703_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_84531.known	chr3	+	1730	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCCTTTTGCTCACTAA	NA	False	NA	22	True	AATAAA	-24	NA	68479577	68533797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_84535.known	chr3	+	2578	1	FSM	ENSMUSG00000046999.3	ENSMUST00000054551.3	2578	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTGTGCATTTTTATT	NA	False	NA	NA	False	ATTAAA	-44	NA	68776918	68779496	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_68776900_68779500
transcript_84536.known	chr3	-	4064	20	FSM	ENSMUSG00000027778.16	ENSMUST00000169064.8	4064	20	0	0	0	0	multi-exon	FALSE	non_canonical	3	27	junction_10	3.97847393451879	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAATAAAAAGGTTAAAAAA	NA	False	NA	NA	False	AAGAAA	-35	NA	68911903	68799857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898295_68901831_68901916_68911764
transcript_84541.known	chr3	+	4057	24	FSM	ENSMUSG00000034349.15	ENSMUST00000148385.8	4057	24	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	205.937434292797	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	20	True	TATAAA	-21	NA	68912340	68941956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_68912424_68913408_68913558_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
transcript_84543.nic	chr3	+	3315	19	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-116	3164	-116	-1624	5prime_fragment	FALSE	canonical	3	521	junction_3	118.624056020129	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACACTGAAAAAGAAATAAA	NA	False	NA	NA	False	AATAAA	-2	NA	68911954	68938792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740
transcript_84548.nic	chr3	+	1845	10	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-116	13283	-116	-60	5prime_fragment	FALSE	canonical	3	521	junction_3	56.5844719789431	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGAGGTCATGGACAG	NA	False	NA	NA	False	NA	NA	NA	68911954	68928673	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568
transcript_84551.nic	chr3	+	1318	9	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	201	15403	-31	-107	5prime_fragment	FALSE	canonical	3	521	junction_3	59.992577665908	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACACAACTAGATTTGGA	NA	False	NA	NA	False	AATAAA	-34	NA	68912271	68926553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507
transcript_84552.nic	chr3	+	1403	9	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	220	15299	-12	-3	5prime_fragment	FALSE	canonical	3	521	junction_3	59.992577665908	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGGTATTAGAGGGAATC	NA	False	NA	NA	False	AGTAAA	-42	NA	68912290	68926657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507
transcript_84555.nic	chr3	+	1383	8	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-13	16515	-13	0	5prime_fragment	FALSE	canonical	3	521	junction_3	58.1644396587496	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAAAAAATTCATGAA	NA	False	NA	NA	False	AATAGA	-20	NA	68912057	68925441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403
transcript_84558.nic	chr3	+	1307	7	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-12	17881	-12	-1366	5prime_fragment	FALSE	canonical	3	521	junction_3	62.824490978174	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTTAAGAAAAAGAATCAC	NA	False	NA	82	True	AATGAA	-2	NA	68912058	68924075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984
transcript_84560.nic	chr3	+	955	6	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	238	18377	6	-1862	5prime_fragment	FALSE	canonical	3	521	junction_3	64.9412041773172	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGGAGAAAAGGTAAATGAA	NA	False	NA	NA	False	ATTAAA	-38	NA	68912308	68923579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425
transcript_84565.known	chr3	+	1163	8	FSM	ENSMUSG00000034349.15	ENSMUST00000136502.8	1163	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	229.368609848151	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAAAAAATTCATGAA	NA	False	NA	NA	False	AATAGA	-20	NA	68912302	68925441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_68912449_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403
transcript_84566.nnic	chr3	-	2968	4	NNC	ENSMUSG00000034317.15	novel	2939	3	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	280.485689870664	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGACATAGTTTTCTTA	NA	False	NA	-6	True	AATAAA	-26	NA	68952079	68942620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_68945342_68951100_68951176_68951793_68951832_68951945
transcript_84568.known	chr3	-	1553	3	FSM	ENSMUSG00000034317.15	ENSMUST00000136512.3	1553	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	267.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTGTTAAAGGAATTTA	NA	False	NA	NA	False	AATACA	-15	NA	68952048	68944169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_68945342_68951100_68951176_68951742
transcript_84569.nnic	chr3	-	3021	3	NNC	ENSMUSG00000034317.15	novel	2939	3	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	297.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGACATAGTTTTCTTA	NA	False	NA	-6	True	AATAAA	-26	NA	68952105	68942620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_68945342_68951100_68951176_68951880
transcript_84571.known	chr3	-	2939	3	FSM	ENSMUSG00000034317.15	ENSMUST00000107802.8	2939	3	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_2	117	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGACATAGTTTTCTTA	NA	False	NA	-6	True	AATAAA	-26	NA	68952088	68942620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_68945342_68951100_68951176_68951945
transcript_84572.nnic	chr3	-	905	3	NNC	ENSMUSG00000034317.15	novel	1553	3	NA	NA	-17	-567	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	297.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTTTGGCAGCTCTTT	NA	False	NA	NA	False	NA	NA	NA	68952105	68944736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_68945342_68951100_68951176_68951880
transcript_84573.known	chr3	-	3726	17	FSM	ENSMUSG00000027782.11	ENSMUST00000194558.6	3726	17	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_6	26.0353575690829	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTGTGGTGTGTGGAT	NA	False	NA	-1	True	AATAAA	-33	NA	69034425	68979553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_68981521_68984082_68984178_68986709_68986873_68988491_68988564_68991382_68991488_68993019_68993149_68994789_68994922_68997108_68997154_68997240_68997411_69000142_69000230_69001985_69002072_69002852_69002949_69008384_69008438_69008534_69008565_69008673_69008764_69009536_69009582_69034064
transcript_84577.nic	chr3	-	1350	12	ISM	ENSMUSG00000027782.11	ENSMUST00000194558.6	3726	17	-34	13474	-13	9020	5prime_fragment	FALSE	canonical	3	213	junction_1	30.4057954458392	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAAAGTGAGTATTTTT	NA	False	NA	NA	False	NA	NA	NA	69034459	68993027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_68993149_68994789_68994922_68997108_68997154_68997240_68997411_69000142_69000230_69001985_69002072_69002852_69002949_69008384_69008438_69008534_69008565_69008673_69008764_69009536_69009582_69034064
transcript_84582.known	chr3	-	2983	1	FSM	ENSMUSG00000103094.2	ENSMUST00000193684.2	2983	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAGAATGAAAGAAAAA	NA	False	NA	NA	False	AATAAA	-10	NA	69030057	69027074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_69027100_69030100
transcript_84583.known	chr3	+	9417	4	FSM	ENSMUSG00000027784.11	ENSMUST00000029355.9	9417	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	7.40870359029762	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCCTTGAACTAAACTC	1774	False	NA	25	True	ATTAAA	-28	NA	69224193	69468135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_69225299_69405103_69405279_69456658_69456821_69460160
transcript_84588.known	chr3	-	2028	3	FSM	ENSMUSG00000043300.3	ENSMUST00000061826.3	2028	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTTCTCGATGTCA	NA	False	NA	1	True	ATTAAA	-41	NA	69506293	69481490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_69483294_69486658_69486725_69506134
transcript_84591.known	chr3	+	9135	16	FSM	ENSMUSG00000027787.15	ENSMUST00000029358.15	9135	16	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_3	66.7311687960648	397	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAAGTCTGGTTGAGTA	NA	False	NA	NA	False	AATAAA	-15	NA	69629317	69663706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
transcript_84599.known	chr3	-	907	8	FSM	ENSMUSG00000027835.12	ENSMUST00000029424.12	907	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	493.920757091372	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTAAAGTTTGACTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	75464118	75424767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440898_75448466_75448686_75464028
transcript_84604.nic	chr3	-	716	7	ISM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	37	4274	-8	-3236	5prime_fragment	FALSE	canonical	3	1188	junction_2	121.620539201056	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTTGTAAAATACTCCAA	NA	False	NA	NA	False	TATAAA	-27	NA	75464126	75428070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
transcript_84608.nic	chr3	-	480	4	ISM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	-23	12389	-23	0	5prime_fragment	FALSE	canonical	3	1445	junction_3	50.7302232949507	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGAGAAAAAAAGTGTAGAA	NA	False	NA	NA	False	NA	NA	NA	75464186	75436185	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_75436235_75440847_75440902_75448466_75448686_75464028
transcript_8461.known	chr10	+	2625	5	FSM	ENSMUSG00000019977.17	ENSMUST00000092674.14	2625	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	452.231688407613	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCATGTTATTTAAAT	NA	False	NA	NA	False	AATAAA	-24	NA	21171936	21187108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997
transcript_84613.known	chr3	+	4091	9	FSM	ENSMUSG00000027834.16	ENSMUST00000029423.9	4091	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.1650635094611	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AGTAAA	-41	NA	75464853	75550802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_75464950_75520386_75520655_75521760_75521992_75523874_75524070_75526425_75526631_75531165_75531264_75545224_75545312_75547555_75547646_75547981
transcript_84618.known	chr3	-	1026	3	FSM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	94	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563038	75554752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_75555246_75556106_75556298_75562696
transcript_84619.known	chr3	-	4551	16	FSM	ENSMUSG00000034109.16	ENSMUST00000117242.8	4551	16	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	6.26950290427133	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTAGAATATTTCTTTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	75864256	75783489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_75785485_75785952_75786025_75793581_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75809707_75809792_75810553_75810637_75813705_75813857_75815436_75815491_75817315_75817366_75818881_75818957_75863418
transcript_84622.known	chr3	-	817	3	FSM	ENSMUSG00000034109.16	ENSMUST00000125405.2	817	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAACAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75863957	75817162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_75817366_75818881_75818957_75863418
transcript_84623.known	chr3	-	6964	30	FSM	ENSMUSG00000062232.15	ENSMUST00000195708.2	6964	30	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_16	7.69637869042917	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTTGTCTAAACTTTT	NA	False	NA	-21	True	AATAAA	-13	NA	79193824	78969837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_78971869_78973879_78974180_78976195_78976756_78977296_78977523_78981614_78981768_78986312_78986520_78988368_78988593_78989930_78989955_78990505_78990630_78990715_78990928_78993051_78993436_78995151_78995393_78995951_78996110_78999118_78999366_78999803_78999913_79000006_79000211_79000301_79000410_79001591_79001757_79002119_79002273_79005526_79005686_79006400_79006538_79011269_79011448_79019477_79019610_79077045_79077064_79080214_79080383_79082280_79082357_79103241_79103326_79117997_79118055_79122263_79122335_79193770
transcript_84626.nic	chr3	-	1996	12	ISM	ENSMUSG00000062232.15	ENSMUST00000195708.2	6964	30	-817	32390	-817	14145	5prime_fragment	FALSE	canonical	3	32	junction_1	4.38630475702357	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAGAAAAGAACATGCAAAA	NA	False	NA	NA	False	NA	NA	NA	79194641	79002227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_79002273_79005526_79005686_79006400_79006538_79011269_79011448_79019477_79019610_79077045_79077064_79080214_79080383_79082280_79082357_79103241_79103326_79117997_79118055_79122263_79122335_79193770
transcript_84629.known	chr3	-	7299	18	FSM	ENSMUSG00000061175.13	ENSMUST00000133154.7	7299	18	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_17	18.4325197807334	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTGAGCGTTTGTAGTT	8092	False	NA	-1	True	AATAAA	-17	NA	79475103	79363280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_79367049_79369435_79369552_79372854_79373056_79386793_79386951_79387865_79389187_79396265_79396436_79396552_79396700_79400138_79400228_79400582_79400785_79407644_79407775_79413513_79413586_79415145_79415236_79415393_79415495_79419637_79419710_79419804_79419906_79422409_79422557_79425371_79425499_79474815
transcript_8463.known	chr10	+	1998	5	FSM	ENSMUSG00000019977.17	ENSMUST00000061324.6	1998	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	490.144366488079	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTTGCATGTTATTTA	NA	False	NA	NA	False	AATAAA	-21	NA	21171916	21187105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21185641
transcript_8464.known	chr10	+	1062	3	FSM	ENSMUSG00000050844.6	ENSMUST00000057341.6	1062	3	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	4.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGGACTCTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	21469043	21498275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21469134_21469230_21469472_21497544
transcript_84644.known	chr3	+	1752	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	0	0	0	0	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	1028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGATGTCCTTTCCTG	NA	False	NA	29	True	AATAAA	-19	NA	79498671	79510957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
transcript_8465.known	chr10	+	3096	14	FSM	ENSMUSG00000019970.16	ENSMUST00000120509.8	3096	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	401.990785610785	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	8	True	AATAAA	-14	NA	21758082	21875792	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21758607_21804240_21804451_21845347_21845424_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_84652.known	chr3	+	3777	9	FSM	ENSMUSG00000027804.14	ENSMUST00000161460.8	3777	9	0	0	0	0	multi-exon	FALSE	canonical	3	2177	junction_4	229.457478359281	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAATCTCATTTTAAAAT	NA	False	NA	16	True	AATAAA	-15	NA	79498648	79510583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_79498865_79500916_79501058_79502508_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
transcript_8466.known	chr10	+	2602	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21854570	21875797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_84661.known	chr3	-	2377	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACCTTTCAAGTCCTTC	3584	False	NA	0	True	AATAAA	-30	NA	79536170	79511094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
transcript_84665.known	chr3	-	3740	3	FSM	ENSMUSG00000027809.15	ENSMUST00000149511.2	3740	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATATAAATGTTTACACTC	3729	False	NA	NA	False	AATAAA	-11	NA	79536025	79526873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_79530275_79530847_79530986_79535824
transcript_84666.known	chr3	+	1970	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4369	False	NA	NA	False	AATAAA	-14	NA	79536385	79540127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_79536664_79538435
transcript_84667.known	chr3	-	2898	12	FSM	ENSMUSG00000027956.12	ENSMUST00000029568.7	2898	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	7.83085653358474	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCTTCTTTAGATA	NA	False	NA	NA	False	AATAAA	-17	NA	79749986	79719870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79749694
transcript_84668.nnic	chr3	-	2819	12	NIC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	-71	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	3.82466981235684	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCTTCTTTAGATA	NA	False	NA	NA	False	AATAAA	-17	NA	79750290	79719870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
transcript_84670.nnic	chr3	-	2893	12	NNC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	-71	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	6.52395458836696	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCTTCTTTAGATA	NA	False	NA	NA	False	AATAAA	-17	NA	79750290	79719870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_79721454_79724323_79724378_79728564_79728737_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
transcript_84671.nnic	chr3	-	2250	12	NIC	ENSMUSG00000027956.12	novel	2220	12	NA	NA	-71	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	3.82466981235684	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCACATTGCTCACAATC	NA	False	NA	NA	False	AAAACA	-1	NA	79750290	79720439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
transcript_84676.known	chr3	+	6729	5	FSM	ENSMUSG00000027955.17	ENSMUST00000118853.8	6729	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.77263412660235	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTATATGTTTGAAAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	79791839	79853587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_79791998_79793294_79794438_79815895_79816111_79843901_79844129_79848601
transcript_84679.known	chr3	-	3029	10	FSM	ENSMUSG00000028020.17	ENSMUST00000029654.15	3029	10	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_1	6.91214711777591	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCTCTTTACTGCTATG	NA	False	NA	-11	True	ATTAAA	-22	NA	80820967	80750905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_80752565_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
transcript_84681.known	chr3	+	2818	7	FSM	ENSMUSG00000028019.10	ENSMUST00000129285.8	2818	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	32.8705372974374	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAAGTGTTCGTCTAAGT	NA	False	NA	40	True	AATAAA	-25	NA	80944478	81121341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_80944862_81038324_81038384_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
transcript_84685.known	chr3	+	3521	6	FSM	ENSMUSG00000028019.10	ENSMUST00000029652.4	3521	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	10.870142593361	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTCGTCTAAGTGTATGT	NA	False	NA	46	True	AATAAA	-31	NA	80943722	81121347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_80944862_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
transcript_84687.known	chr3	+	3468	8	FSM	ENSMUSG00000028015.4	ENSMUST00000029649.3	3468	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.494871659305393	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81839907	81864032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_81840083_81848838_81848945_81849499_81849640_81852168_81852337_81853620_81853743_81858679_81858844_81859505_81859599_81861532
transcript_84689.known	chr3	+	703	1	FSM	ENSMUSG00000028015.4	ENSMUST00000192067.2	703	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	TTTAAA	-5	NA	81839929	81840632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_81839900_81840600
transcript_8469.known	chr10	+	2476	12	FSM	ENSMUSG00000019970.16	ENSMUST00000100036.10	2476	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	266.915376443206	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21868121	21875797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_84690.known	chr3	-	3223	14	FSM	ENSMUSG00000028005.14	ENSMUST00000029635.14	3223	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.421325044234743	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGCGATTTTTCTTAAT	NA	False	NA	37	True	AATAAA	-14	NA	81981992	81939312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_81940589_81941618_81941746_81942048_81942204_81942586_81942728_81945223_81945462_81947032_81947231_81950426_81950561_81951435_81951553_81952705_81952937_81953819_81954018_81965547_81965667_81968326_81968428_81981304_81981379_81981878
transcript_84692.known	chr3	+	6218	14	FSM	ENSMUSG00000033900.14	ENSMUST00000091014.10	6218	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	2.99111109157286	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTAACTGACGTTTTT	NA	False	NA	5	True	AATAAA	-17	NA	82265378	82302575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_82265563_82266281_82266432_82267196_82267282_82270597_82270922_82278485_82278710_82281414_82281509_82284229_82284475_82286243_82286315_82287384_82287554_82289200_82289291_82290514_82290677_82290822_82290969_82291151_82291285_82298434
transcript_84694.known	chr3	+	1713	12	FSM	ENSMUSG00000033900.14	ENSMUST00000195471.6	1713	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	3.13603423830188	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAGAGAAAAAGCTAGAA	NA	False	NA	NA	False	AGTAAA	-37	NA	82265476	82290835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_82265563_82266281_82266432_82267196_82267282_82270597_82270922_82278485_82278710_82281414_82281509_82284229_82284475_82286243_82286315_82287384_82287554_82289200_82289291_82290514_82290677_82290822
transcript_84696.known	chr3	+	1695	10	FSM	ENSMUSG00000033860.14	ENSMUST00000048486.13	1695	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	1.8324913891634	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGACATTCCGTGGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	82915030	82922356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444_82921615_82922141
transcript_84698.known	chr3	+	1851	15	FSM	ENSMUSG00000027998.12	ENSMUST00000150268.8	1851	15	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_6	49.0312790627637	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGCATGTTGAGGATTG	NA	False	NA	7	True	AATAAA	-40	NA	82962828	82979662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
transcript_84705.known	chr3	+	1749	15	FSM	ENSMUSG00000027998.12	ENSMUST00000029628.11	1749	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	194.977719815598	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTGTGTTTTATTTCTG	NA	False	NA	24	True	AATAAA	-16	NA	82962838	82979596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977929_82978044_82978496_82978691_82979417
transcript_84706.known	chr3	+	1608	15	FSM	ENSMUSG00000027998.12	ENSMUST00000122128.2	1608	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	195.015331684042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATGGCTGTCCTGTTC	NA	False	NA	-93	True	NA	NA	NA	82962861	82979479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966661_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
transcript_84707.known	chr3	+	2003	3	FSM	ENSMUSG00000027996.14	ENSMUST00000029625.8	2003	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	5.5	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTCTGTCATGTCT	NA	False	NA	21	True	TATAAA	-24	NA	83673627	83681623	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_83674351_83676632_83676714_83680424
transcript_8471.known	chr10	+	2576	12	FSM	ENSMUSG00000019970.16	ENSMUST00000092673.11	2576	12	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	274.769775907151	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCATAAATTGTGTCA	NA	False	NA	6	True	AATAAA	-12	NA	21869788	21875790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21870081_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_84710.known	chr3	-	3014	3	FSM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	5.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGGTTTCTCTGTTTTTC	NA	False	NA	-1	True	TATAAA	-16	NA	83749074	83743578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_83746097_83748195_83748444_83748826
transcript_84711.nic	chr3	-	2991	2	ISM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	406	0	406	0	3prime_fragment	FALSE	canonical	3	36	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGGTTTCTCTGTTTTTC	NA	False	NA	-1	True	TATAAA	-16	NA	83748668	83743578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_83746097_83748195
transcript_84713.known	chr3	-	5555	35	FSM	ENSMUSG00000033767.15	ENSMUST00000191758.6	5555	35	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	12.592082974362	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCCACTTTGTCTTCATT	NA	False	NA	NA	False	AATAAA	-41	NA	83947482	83804961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83816458_83816642_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
transcript_84715.known	chr3	-	4774	34	FSM	ENSMUSG00000033767.15	ENSMUST00000192095.6	4774	34	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	22.9510198312573	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTTTGTTTATTTTTG	NA	False	NA	-26	True	AATAAA	-14	NA	83947444	83805515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_83805921_83806483_83806624_83807633_83807723_83808652_83808774_83812339_83812423_83813653_83813733_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829867_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
transcript_84721.nic	chr3	-	1721	16	ISM	ENSMUSG00000033767.15	ENSMUST00000052342.9	4815	34	-13	36645	-13	5665	5prime_fragment	FALSE	canonical	3	71	junction_1	9.96973197009606	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATGGAAGAAATATAAAAGT	NA	False	NA	NA	False	NA	NA	NA	83947495	83842160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
transcript_84722.known	chr3	-	875	8	FSM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	22.7497476998793	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063093	83995239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
transcript_84723.nnic	chr3	-	838	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	79.9112354775945	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063131	83995239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_83995482_84000861_84000907_84012241_84012357_84041324_84041474_84045475_84045534_84049005_84049072_84062968
transcript_84724.nnic	chr3	-	716	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	44	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_2	82.0137183646736	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063049	83995239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_83995482_84000861_84000907_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
transcript_84726.known	chr3	-	5755	12	FSM	ENSMUSG00000027993.17	ENSMUST00000107693.9	5755	12	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_11	27.7929178207639	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCTTCTCCCGCCATAA	NA	False	NA	NA	False	NA	NA	NA	84128184	84069180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84127935
transcript_84727.known	chr3	-	7428	12	FSM	ENSMUSG00000027993.17	ENSMUST00000107691.8	7428	12	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_11	27.3305447747744	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTGAGTGTTTATTCAAC	NA	False	NA	-20	True	AATAAA	-20	NA	84167119	84067746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84166631
transcript_84728.known	chr3	-	3816	12	FSM	ENSMUSG00000027993.17	ENSMUST00000054990.11	3816	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	26.7448921515557	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	AAGAAA	-43	NA	84178098	84071028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84177940
transcript_84729.nic	chr3	-	3874	12	NIC	ENSMUSG00000027993.17	novel	3816	12	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	28.1116428337071	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	8111	False	NA	NA	False	AAGAAA	-43	NA	84212763	84071028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84212547
transcript_84736.known	chr3	-	655	2	FSM	ENSMUSG00000027993.17	ENSMUST00000152953.2	655	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGAATGCTCTGGCCTTT	NA	False	NA	NA	False	AATAAA	-25	NA	84166676	84164989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_84165600_84166631
transcript_84737.known	chr3	-	5918	12	FSM	ENSMUSG00000041842.16	ENSMUST00000107689.7	5918	12	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	2.63165724111457	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTATGCCTTTGCACAT	NA	False	NA	NA	False	AATAAA	-22	NA	84387736	84349504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_84353838_84356056_84356222_84358676_84358795_84360823_84360895_84362093_84362202_84362294_84362366_84364301_84364403_84364492_84364579_84371578_84371682_84372728_84372791_84381446_84382085_84387674
transcript_8474.known	chr10	+	2456	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	4260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870564	21875802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_84741.known	chr3	-	1343	9	FSM	ENSMUSG00000074513.10	ENSMUST00000143514.3	1343	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	63.3733974156349	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCCCCTGGAAAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	84489932	84405042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84436476_84436573_84441893_84442003_84455240_84455343_84489720
transcript_84742.known	chr3	-	1714	9	FSM	ENSMUSG00000074513.10	ENSMUST00000107687.9	1714	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	68.2545786009994	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTGACTGGCCCATAGC	NA	False	NA	NA	False	NA	NA	NA	84489792	84404510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84436497_84436573_84441893_84442003_84455240_84455343_84489720
transcript_84745.known	chr3	-	2799	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	-3	True	ATTAAA	-16	NA	84489841	84403399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
transcript_84749.nic	chr3	-	783	5	ISM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	-236	23509	-145	-21866	5prime_fragment	FALSE	canonical	3	164	junction_3	9.60143218483576	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAAAACATTCTGAAACT	NA	False	NA	NA	False	AAGAAA	-4	NA	84490077	84426908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
transcript_84752.known	chr3	+	4473	14	FSM	ENSMUSG00000028086.16	ENSMUST00000107679.8	4473	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	22.7195403737157	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGCCTGTTTCTTCCACT	NA	False	NA	25	True	AATAAA	-19	NA	84722574	84886505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_84723077_84771270_84771319_84771443_84771508_84810807_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
transcript_84757.nic	chr3	+	3547	13	NIC	ENSMUSG00000028086.16	novel	4473	14	NA	NA	-691	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	21.8649580125115	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAGAAAAAAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	84721883	84884952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_84723077_84771270_84771319_84810807_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
transcript_84763.known	chr3	+	2221	11	FSM	ENSMUSG00000028086.16	ENSMUST00000029727.8	2221	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	26.0516794084374	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAGAAAAAAAAAAAGAGA	629	False	NA	NA	False	NA	NA	NA	84859452	84884952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_84859947_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
transcript_84764.nic	chr3	+	2405	9	ISM	ENSMUSG00000028086.16	ENSMUST00000107679.8	4473	14	-684	9990	-684	-8437	5prime_fragment	FALSE	canonical	3	30	junction_3	20.6760731281353	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTTTCATACACAGCCC	NA	False	NA	NA	False	AATAAA	-2	NA	84721890	84876515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_84723077_84771270_84771319_84771443_84771508_84810807_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471
transcript_84766.nic	chr3	+	2333	8	NIC	ENSMUSG00000028086.16	novel	4473	14	NA	NA	-676	-8437	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	20.6565698399086	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTTTCATACACAGCCC	NA	False	NA	NA	False	AATAAA	-2	NA	84721898	84876515	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_84723077_84771270_84771319_84810807_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471
transcript_84770.nic	chr3	+	2143	4	ISM	ENSMUSG00000028086.16	ENSMUST00000151410.2	4348	13	-1160	73603	-950	575	5prime_fragment	FALSE	canonical	3	30	junction_3	8.17856276425687	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTACCTTTAGTCCCCT	NA	False	NA	NA	False	NA	NA	NA	84721624	84811386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_84723077_84771270_84771319_84771443_84771508_84810807
transcript_84773.known	chr3	+	56	3	FSM	ENSMUSG00000028086.16	ENSMUST00000212597.2	56	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	12.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAACCTTTGCATCTTCT	NA	False	NA	NA	False	NA	NA	NA	84723072	84810811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_84723077_84771270_84771319_84810807
transcript_84774.known	chr3	-	375	2	FSM	ENSMUSG00000085527.2	ENSMUST00000128872.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTGCTGTTCTAGAGG	NA	False	NA	NA	False	NA	NA	NA	85481161	85465486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_85465826_85481125
transcript_84780.known	chr3	+	3469	13	FSM	ENSMUSG00000028085.13	ENSMUST00000127348.8	3469	13	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	19.0283049399806	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGGTGCAGTGAAAGAGG	NA	False	NA	NA	False	CATAAA	-18	NA	85481425	85562929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
transcript_84781.known	chr3	+	1980	12	FSM	ENSMUSG00000028085.13	ENSMUST00000107674.2	1980	12	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	12.872547507733	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAACATGGCTGAAAAC	NA	False	NA	NA	False	NA	NA	NA	85481433	85560140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587
transcript_84785.known	chr3	+	7217	21	FSM	ENSMUSG00000028082.15	ENSMUST00000238443.2	7217	21	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	14.9695524315191	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTTTTGCCTGCA	NA	False	NA	NA	False	ATTAAA	-22	NA	85878415	86037833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_85878732_85948132_85948173_85982454_85982496_85987701_85987745_85990533_85990673_85990808_85990963_85991674_85992665_86000996_86001105_86005453_86005567_86010196_86010259_86011389_86011655_86014276_86014346_86014518_86014660_86020412_86020486_86022093_86022225_86024125_86024185_86027836_86028040_86028440_86028494_86030452_86030640_86030992_86031091_86033901
transcript_84794.known	chr3	-	977	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	0	0	0	0	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	3975	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTCCATTGATTTG	NA	False	NA	NA	False	AATAAA	-21	NA	86050009	86045246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
transcript_84809.known	chr3	-	3486	16	FSM	ENSMUSG00000028078.15	ENSMUST00000195561.6	3486	16	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_11	36.9688156874593	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATCCATGGGGTGGGT	NA	False	NA	-9	True	AATAAA	-14	NA	86827642	86693465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
transcript_84810.nnic	chr3	-	4055	16	NIC	ENSMUSG00000028078.15	novel	4012	16	NA	NA	-120	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	61.1551760324141	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGGGTGGGTGAAATT	NA	False	NA	-3	True	AATAAA	-20	NA	86828279	86693459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_86694720_86699375_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
transcript_84811.known	chr3	-	4908	15	FSM	ENSMUSG00000028078.15	ENSMUST00000192773.6	4908	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	89.2026184753404	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGGGTGGGTGAAATT	NA	False	NA	-3	True	AATAAA	-20	NA	86827495	86693459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_86694720_86695928_86695942_86699375_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
transcript_84817.known	chr3	-	2066	12	FSM	ENSMUSG00000028078.15	ENSMUST00000194452.2	2066	12	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_7	39.3729781062936	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACACACCTTTCTCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	86827681	86706227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
transcript_84821.known	chr3	+	1243	7	FSM	ENSMUSG00000041750.14	ENSMUST00000041920.5	1243	7	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	26.2408714286194	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTATGTGCGGAGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	86893892	86896840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895662_86895663_86895863_86896457_86896555_86896642
transcript_84822.known	chr3	+	1131	6	FSM	ENSMUSG00000041750.14	ENSMUST00000192481.2	1131	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	25.3929123969662	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTATGTGCGGAGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	86893892	86896840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_86894013_86894294_86894454_86894849_86895129_86895584_86895863_86896457_86896555_86896642
transcript_84823.known	chr3	+	1527	6	FSM	ENSMUSG00000041750.14	ENSMUST00000194208.6	1527	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	24.5568727650733	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTTATTGTTTTATTA	NA	False	NA	2	True	AATAAA	-14	NA	86893857	86897087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895863_86896457_86896555_86896642
transcript_84827.known	chr3	-	1946	6	FSM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	13.2	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906748	86903140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939_86906213_86906498
transcript_84829.nic	chr3	-	1872	5	ISM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	360	0	-127	0	3prime_fragment	FALSE	canonical	3	57	junction_4	12.9687123493429	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906388	86903140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939
transcript_84831.known	chr3	-	1421	5	FSM	ENSMUSG00000028076.13	ENSMUST00000063869.11	1421	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	34.9213401804684	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906616	86903140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_86903909_86903996_86904094_86904644_86904924_86906053_86906213_86906498
transcript_84834.nic	chr3	-	2617	4	NIC	ENSMUSG00000028076.13	novel	1946	6	NA	NA	-34	0	intron_retention	FALSE	canonical	3	57	junction_3	13.490737563232	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906682	86903140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_86903909_86903996_86904094_86904644_86906213_86906498
transcript_84837.known	chr3	-	7236	16	FSM	ENSMUSG00000041734.16	ENSMUST00000159976.8	7236	16	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_15	12.9144191593049	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTTCTGTGTTATTTTA	NA	False	NA	NA	False	AAAAAG	-3	NA	87082007	86985899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_86990928_86991173_86991252_86992111_86992252_86992388_86992497_86993688_86993888_86995472_86995574_86995665_86995793_86996457_86996586_86996788_86996938_86997102_86997209_86997764_86997916_86999411_86999570_87002943_87003094_87005048_87005214_87048283_87048427_87081702
transcript_84839.known	chr3	-	7278	16	FSM	ENSMUSG00000041734.16	ENSMUST00000107618.9	7278	16	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_15	10.3850319637875	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTACCATGTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	87082054	86985907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_86990928_86991173_86991252_86992111_86992252_86992388_86992497_86993688_86993888_86995472_86995574_86995665_86995793_86996457_86996586_86996788_86996938_86997102_86997209_86997764_86997916_86999411_86999570_87002943_87003094_87005048_87005214_87048283_87048430_87081702
transcript_84850.known	chr3	+	5127	5	FSM	ENSMUSG00000003382.19	ENSMUST00000170036.8	5127	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	10.2072278312968	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAGAGTACTTAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	87432884	87447449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87432967_87434564_87434624_87435176_87435415_87436530_87436647_87442817
transcript_84853.known	chr3	+	5309	5	FSM	ENSMUSG00000003382.19	ENSMUST00000119109.8	5309	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	13.4605906259718	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATGTTTGCTGAGTAT	NA	False	NA	NA	False	ATTAAA	-24	NA	87432713	87447463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87432967_87434567_87434624_87435176_87435415_87436530_87436647_87442817
transcript_84858.known	chr3	+	2151	4	FSM	ENSMUSG00000003382.19	ENSMUST00000117293.2	2151	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	8.80656320908194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGTACAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	87432920	87438338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87432967_87434564_87434624_87435176_87435415_87436530
transcript_84865.known	chr3	-	2588	17	FSM	ENSMUSG00000028072.7	ENSMUST00000029712.5	2588	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.97909382195325	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCTCTTGGCCATTC	NA	False	NA	NA	False	NA	NA	NA	87702469	87685550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_87685907_87686942_87687102_87687377_87687619_87688737_87688911_87689047_87689179_87689457_87689605_87690031_87690135_87690380_87690437_87690593_87690612_87690976_87691307_87693274_87693408_87695623_87695767_87695928_87696081_87696923_87696993_87698680_87698753_87698976_87699052_87702239
transcript_84872.known	chr3	-	2099	7	FSM	ENSMUSG00000004895.10	ENSMUST00000005015.10	2099	7	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_5	35.6401770789964	523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTGTCTGGATCTCAGA	2299	False	NA	1	True	AATAAA	-27	NA	87792915	87766209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_87766654_87767452_87767519_87769437_87769582_87774621_87774718_87776889_87777457_87779516_87779565_87792181
transcript_84886.known	chr3	+	2245	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	0	0	0	0	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	1876	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACTAATTCTTTTCAA	NA	False	NA	25	True	AATAAA	-21	NA	87813627	87823439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
transcript_84904.known	chr3	-	2492	8	FSM	ENSMUSG00000004896.17	ENSMUST00000005016.16	2492	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	29.6922995583236	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGGAGCCTGTGTCAC	9443	False	NA	NA	False	AATAAA	-13	NA	87837451	87830211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
transcript_84913.nic	chr3	+	1034	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	-20	-228	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826792	87830741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_84917.known	chr3	-	3157	7	FSM	ENSMUSG00000004896.17	ENSMUST00000160648.8	3157	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	31.4046174948844	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAGACCTCTGAGTTCC	9460	False	NA	-2	True	NA	NA	NA	87837434	87829907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835023_87835230_87835356_87837162
transcript_84918.known	chr3	-	3197	7	FSM	ENSMUSG00000004896.17	ENSMUST00000159091.9	3197	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	23.5849528301415	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAGACCTCTGAGTTCC	9460	False	NA	-2	True	NA	NA	NA	87837434	87829907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
transcript_84920.known	chr3	-	1620	7	FSM	ENSMUSG00000004896.17	ENSMUST00000160074.8	1620	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_6	36.9357550349252	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGTAATTTTTATTTC	NA	False	NA	-22	True	TATAAA	-27	NA	87835565	87830964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835023_87835230
transcript_84923.known	chr3	-	1568	7	FSM	ENSMUSG00000004896.17	ENSMUST00000160143.2	1568	7	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	33.5596483890997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCACCAGTGCCAATATGG	9004	False	NA	NA	False	NA	NA	NA	87837890	87831089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_87831220_87831650_87831836_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
transcript_84928.known	chr3	+	1115	6	FSM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	351.330841230883	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826869	87830979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_84930.known	chr3	+	1226	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826812	87830979	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_84934.known	chr3	+	1339	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAGAAGTCTTAAAAG	NA	False	NA	16	True	AATAAA	-18	NA	87826812	87830969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_84946.nnic	chr3	+	3176	5	NNC	ENSMUSG00000048039.9	novel	2893	4	NA	NA	-74	0	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_1	172.954293095026	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGTGTATGTGTGTGC	NA	False	NA	31	True	NA	NA	NA	87837546	87847993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_87837919_87838336_87838546_87838637_87839583_87845880_87846082_87846544
transcript_84952.known	chr3	+	2893	4	FSM	ENSMUSG00000048039.9	ENSMUST00000055984.7	2893	4	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_2	9.0921211313239	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGTGTATGTGTGTGC	NA	False	NA	31	True	NA	NA	NA	87837620	87847993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87837919_87838637_87839583_87845880_87846082_87846544
transcript_84953.nnic	chr3	+	3268	4	NNC	ENSMUSG00000048039.9	novel	2893	4	NA	NA	-74	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	165.235858362793	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGTGTATGTGTGTGC	NA	False	NA	31	True	NA	NA	NA	87837546	87847993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_87837919_87838336_87839583_87845880_87846082_87846544
transcript_84961.known	chr3	+	931	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	3.29983164553722	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGCTCCCTGAG	8831	False	NA	8	True	ATTAAA	-19	NA	87855972	87860683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
transcript_84964.known	chr3	+	6126	4	FSM	ENSMUSG00000004891.17	ENSMUST00000090973.12	6126	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	1.4142135623731	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCTGCTTTCTTCTA	NA	False	NA	10	True	AATAAA	-20	NA	87878399	87887758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87879296_87880298_87880424_87882108_87882183_87882727
transcript_84970.known	chr3	+	959	9	FSM	ENSMUSG00000028069.17	ENSMUST00000194258.6	959	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	81.6783898898601	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGGAAGAAGAAGAAGAGGC	1735	False	NA	NA	False	NA	NA	NA	87950430	87962507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87950487_87950773_87950909_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
transcript_84974.known	chr3	+	1630	8	FSM	ENSMUSG00000028069.17	ENSMUST00000029707.13	1630	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	22.2417148068898	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTCTTTGTTTTGTTTT	1719	False	NA	36	True	TTTAAA	-25	NA	87950414	87963297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
transcript_84981.known	chr3	+	745	6	FSM	ENSMUSG00000028069.17	ENSMUST00000194380.2	745	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	24.5063257139866	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAGAAAAAAGTTTGT	1720	False	NA	NA	False	GATAAA	-13	NA	87950415	87961967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675
transcript_84984.known	chr3	-	908	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	0	0	0	0	multi-exon	TRUE	canonical	3	839	junction_3	34.2963554915096	1101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965802	87963826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
transcript_84999.known	chr3	+	5756	38	FSM	ENSMUSG00000028068.15	ENSMUST00000071812.11	5756	38	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_11	23.9826757536325	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGCGTTGTTGCTATAG	NA	False	NA	19	True	AATAAA	-20	NA	87989277	88028355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87989400_87991237_87991326_87993456_87993614_87994584_87994663_87996200_87996278_87996967_87997036_87997123_87997238_87997444_87997624_87998042_87998122_87998777_87998942_87999718_87999807_88001890_88002055_88004208_88004367_88005624_88005747_88006163_88006328_88007932_88008024_88008734_88008903_88008984_88009125_88009203_88009375_88011366_88011451_88011607_88011680_88011772_88011843_88014818_88015028_88015667_88015821_88016113_88016278_88016578_88016804_88017301_88017443_88019610_88019696_88019904_88020138_88020406_88020540_88020653_88020757_88021230_88021358_88022210_88022299_88023210_88023424_88024086_88024254_88024505_88024608_88024982_88025092_88027469
transcript_850.known	chr1	+	2672	1	FSM	ENSMUSG00000026127.14	ENSMUST00000187077.2	2672	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	5660	False	NA	NA	False	NA	NA	NA	34478978	34481650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_34479000_34481600
transcript_85013.known	chr3	+	1564	3	FSM	ENSMUSG00000028068.15	ENSMUST00000193940.2	1564	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_2	5.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTGA	NA	False	NA	NA	False	NA	NA	NA	87989326	87994859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_87989400_87991237_87991326_87993456
transcript_85016.known	chr3	-	987	3	FSM	ENSMUSG00000096935.6	ENSMUST00000181837.3	987	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCATTTCTTTCTTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	88085092	88078862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88079566_88083157_88083243_88084893
transcript_85020.known	chr3	-	1937	10	FSM	ENSMUSG00000104445.2	ENSMUST00000171887.4	1937	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	2.76664435510861	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGAGCGTCTAAAGGGT	NA	False	NA	NA	False	NA	NA	NA	88162016	88150180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88150756_88150899_88150974_88151831_88151954_88152439_88152574_88152742_88152881_88153121_88153289_88154738_88154887_88154993_88155145_88155583_88155771_88161775
transcript_85021.known	chr3	-	584	4	FSM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	0	0	0	0	multi-exon	TRUE	canonical	3	152	junction_3	20.138409955991	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204306	88190063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204130
transcript_85031.known	chr3	+	1977	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	4967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3804	False	NA	23	True	ATTAAA	-15	NA	88204422	88229074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
transcript_85039.known	chr3	+	1943	13	FSM	ENSMUSG00000001416.14	ENSMUST00000168062.8	1943	13	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	126.158630303281	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCGGCAAACTGGTGCT	3876	False	NA	NA	False	NA	NA	NA	88204494	88228814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
transcript_85047.known	chr3	+	2056	12	FSM	ENSMUSG00000001416.14	ENSMUST00000167718.2	2056	12	0	0	0	0	multi-exon	FALSE	canonical	3	2432	junction_7	97.6323005756931	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCGGCAAACTGGTGCT	3841	False	NA	NA	False	NA	NA	NA	88204459	88228814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
transcript_85050.known	chr3	+	1804	12	FSM	ENSMUSG00000001416.14	ENSMUST00000164166.8	1804	12	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_2	744.224284153619	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGTTGTCATGTGTTTT	3862	False	NA	22	True	ATTAAA	-14	NA	88204480	88229073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88204574_88206648_88206711_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
transcript_85057.known	chr3	+	1932	9	FSM	ENSMUSG00000001416.14	ENSMUST00000164783.8	1932	9	0	0	0	0	multi-exon	FALSE	canonical	3	2432	junction_7	69.913227468055	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCAAT	3814	False	NA	NA	False	NA	NA	NA	88204432	88221714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862
transcript_85059.known	chr3	+	4219	6	FSM	ENSMUSG00000001418.14	ENSMUST00000177005.8	4219	6	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_4	66.9489357645064	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAATAAAATTTA	3995	False	NA	NA	False	NA	NA	NA	88232329	88238620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88232509_88232983_88233239_88233421_88233620_88233717_88233937_88235163_88235421_88235509
transcript_85071.known	chr3	+	960	5	FSM	ENSMUSG00000001418.14	ENSMUST00000176425.2	960	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	416.550717200199	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCACTCTCCAGAGGGAA	4054	False	NA	NA	False	CATAAA	-5	NA	88232388	88235675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88232509_88233421_88233620_88233717_88233937_88235163_88235421_88235509
transcript_85074.known	chr3	-	2053	4	FSM	ENSMUSG00000001420.14	ENSMUST00000107553.8	2053	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	8.48528137423857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGGCTCGTTCATT	NA	False	NA	NA	False	AATAAA	-11	NA	88241575	88236352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241414
transcript_85075.known	chr3	-	2406	4	FSM	ENSMUSG00000001420.14	ENSMUST00000001456.11	2406	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	5.18544972870135	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAATAAGAGAGACTGG	NA	False	NA	NA	False	NA	NA	NA	88241811	88235961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241688
transcript_85097.nic	chr3	+	4504	22	NIC	ENSMUSG00000001415.11	novel	4448	22	NA	NA	-25	0	intron_retention	FALSE	canonical	3	5	junction_7	79.1884860729804	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTGCTGTGTCTTCT	NA	False	NA	13	True	AATAAA	-20	NA	88243541	88269645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256417_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
transcript_85102.known	chr3	+	4448	22	FSM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	44.0686436309756	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTGCTGTGTCTTCT	NA	False	NA	13	True	AATAAA	-20	NA	88243566	88269645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
transcript_85131.known	chr3	+	3119	12	FSM	ENSMUSG00000001415.11	ENSMUST00000192057.6	3119	12	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	17.1507655902172	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAATTTTAAGTATAGT	NA	False	NA	NA	False	NA	NA	NA	88243617	88260036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285
transcript_85137.nic	chr3	+	1221	5	ISM	ENSMUSG00000001415.11	ENSMUST00000192057.6	3119	12	-76	6789	-25	-1656	5prime_fragment	FALSE	canonical	3	289	junction_3	7.49583217528247	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAGCTCAGAGATGCAT	NA	False	NA	NA	False	NA	NA	NA	88243541	88253247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669
transcript_85141.known	chr3	+	1670	8	FSM	ENSMUSG00000041423.17	ENSMUST00000147991.2	1670	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	1.8070158058105	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGCTCTCTGGGATTGA	NA	False	NA	NA	False	AATAAA	-18	NA	88271895	88275848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88271931_88272334_88272411_88272981_88273110_88273188_88273392_88273466_88273594_88274211_88274309_88274525_88274677_88274995
transcript_85145.known	chr3	-	1047	7	FSM	ENSMUSG00000074489.10	ENSMUST00000107543.8	1047	7	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	15.3993145590604	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTGGAGTCTGTCCATT	7128	False	NA	NA	False	AATAAA	-19	NA	88280050	88275922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88277434_88277671_88278680_88278787_88279845
transcript_85146.known	chr3	-	2051	6	FSM	ENSMUSG00000074489.10	ENSMUST00000107542.2	2051	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	10.571660229122	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7128	False	NA	NA	False	AATAAA	-13	NA	88280050	88275928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88277434_88278787_88279845
transcript_85147.nnic	chr3	-	713	5	NIC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	35.14612354158	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7114	False	NA	NA	False	AATAAA	-13	NA	88280064	88275928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279845
transcript_85148.known	chr3	-	440	4	FSM	ENSMUSG00000074483.3	ENSMUST00000076048.5	440	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	18.0616229121921	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTCGAGTCTG	5243	False	NA	NA	False	AATAAA	-13	NA	88291740	88290807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88291075_88291280_88291339_88291481_88291515_88291658
transcript_85149.known	chr3	-	795	3	FSM	ENSMUSG00000028066.16	ENSMUST00000193338.6	795	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317633	88301449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88301878_88303211_88303408_88317462
transcript_85150.known	chr3	-	1007	5	FSM	ENSMUSG00000028066.16	ENSMUST00000056370.13	1007	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	377.05205210952	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317638	88301449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88301878_88303211_88303408_88306441_88306543_88307017_88307124_88317462
transcript_85152.known	chr3	-	3577	4	FSM	ENSMUSG00000050144.14	ENSMUST00000057935.9	3577	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	3.85861230093008	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	4066	False	NA	-4	True	ATTAAA	-18	NA	88332446	88317805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332034
transcript_85153.known	chr3	-	3504	4	FSM	ENSMUSG00000050144.14	ENSMUST00000195657.6	3504	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	25.4689353265241	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	4093	False	NA	-4	True	ATTAAA	-18	NA	88332419	88317805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332080
transcript_85154.known	chr3	-	3429	4	FSM	ENSMUSG00000050144.14	ENSMUST00000193433.6	3429	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	28.7672653471886	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCTGGCTTTTGGGTTT	4097	False	NA	-3	True	ATTAAA	-19	NA	88332415	88317804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332152
transcript_85160.known	chr3	-	3418	3	FSM	ENSMUSG00000050144.14	ENSMUST00000168755.7	3418	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCTGGCTTTTGGGTTT	4098	False	NA	-3	True	ATTAAA	-19	NA	88332414	88317804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88320205_88327807_88328446_88332034
transcript_85162.known	chr3	-	3205	15	FSM	ENSMUSG00000028064.18	ENSMUST00000029700.12	3205	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	15.169787374238	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATGGCGTGCTGTGCTG	9696	False	NA	NA	False	ATTAAA	-23	NA	88363046	88343265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986_88357160_88357294_88357420_88357817_88357935_88358651_88358758_88358994_88359094_88359326_88359390_88360277_88360439_88361985_88362154_88362854
transcript_85164.known	chr3	-	2357	7	FSM	ENSMUSG00000028064.18	ENSMUST00000149145.2	2357	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	14.3614066163451	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTATGGCGTGCTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	88357345	88343268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986
transcript_85165.known	chr3	-	2108	5	FSM	ENSMUSG00000028064.18	ENSMUST00000156108.8	2108	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	4.71036092035419	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTATGGCGTGCTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	88348446	88343268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004
transcript_8517.known	chr10	+	688	5	FSM	ENSMUSG00000019970.16	ENSMUST00000126560.2	688	5	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	86.3376366366372	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGTGGAGAGGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	21870609	21872240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924
transcript_85185.known	chr3	-	1536	10	FSM	ENSMUSG00000028063.16	ENSMUST00000036252.7	1536	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_9	48.196357630934	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGCCCTGGCCTTTC	9763	False	NA	-2	True	ATTAAA	-18	NA	88400619	88390512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88400543
transcript_85186.known	chr3	-	3156	12	FSM	ENSMUSG00000028063.16	ENSMUST00000029699.13	3156	12	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	44.0904404848575	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCTGTGGTGTCTCTTTG	NA	False	NA	-3	True	AATACA	-19	NA	88410642	88388454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88389408_88389652_88389920_88390624_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
transcript_85187.known	chr3	-	2021	10	FSM	ENSMUSG00000028063.16	ENSMUST00000120377.8	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	22.6377811589932	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCCTGGCCTTTCT	NA	False	NA	-1	True	ATTAAA	-19	NA	88410614	88390511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
transcript_85190.known	chr3	-	568	4	FSM	ENSMUSG00000028062.16	ENSMUST00000119002.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	1254.14043161929	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTCTCACCTGCTTT	1142	False	NA	-7	True	AATAAA	-13	NA	88460166	88457126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460036
transcript_85191.known	chr3	-	668	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	977	False	NA	-6	True	AATAAA	-14	NA	88460331	88457125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
transcript_85192.known	chr3	-	438	3	FSM	ENSMUSG00000028062.16	ENSMUST00000156421.2	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	1321	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGTCTCACCTGCTT	1108	False	NA	-8	True	AATAAA	-12	NA	88460200	88457127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88457312_88458002_88458093_88460036
transcript_85195.known	chr3	-	567	2	FSM	ENSMUSG00000028062.16	ENSMUST00000145172.2	567	2	0	0	0	0	multi-exon	FALSE	canonical	3	2467	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGAGTACGGTGCTGGCC	927	False	NA	NA	False	AATAAA	-22	NA	88460381	88459536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88459825_88460102
transcript_852.known	chr1	+	1559	15	FSM	ENSMUSG00000026126.16	ENSMUST00000027302.14	1559	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	5.28426621090905	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCTTTGTTCCAGTGA	440	False	NA	NA	False	AATAAA	-23	NA	34498845	34512865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_34498998_34501782_34501892_34502187_34502265_34502349_34502446_34502546_34502586_34507373_34507443_34508920_34508984_34509280_34509424_34510573_34510641_34510721_34510800_34510892_34510983_34511183_34511273_34511843_34512050_34512415_34512491_34512659
transcript_85209.known	chr3	+	3330	11	FSM	ENSMUSG00000008604.12	ENSMUST00000008748.8	3330	11	0	0	0	0	multi-exon	FALSE	canonical	3	1295	junction_8	115.436605979213	1372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGTGGTTTGTTTGTTG	6105	False	NA	NA	False	AATAAA	-26	NA	88461064	88477032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414_88470641_88471676_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
transcript_8521.known	chr10	+	347	3	FSM	ENSMUSG00000019970.16	ENSMUST00000141218.8	347	3	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	108.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGGGTTAGTCAAGGCAG	NA	False	NA	NA	False	TATAAA	-18	NA	21870581	21871500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_21870725_21870864_21870941_21871372
transcript_8522.known	chr10	-	876	2	FSM	ENSMUSG00000097327.8	ENSMUST00000069372.7	876	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCCGGAGCCTTCGCGT	NA	False	NA	NA	False	NA	NA	NA	22025169	22020319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_22020414_22024387
transcript_85249.known	chr3	+	1379	6	FSM	ENSMUSG00000008604.12	ENSMUST00000194303.6	1379	6	0	0	0	0	multi-exon	FALSE	canonical	3	1330	junction_4	125.024797540328	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTCCATGAACATGTCT	6111	False	NA	NA	False	AATAAA	-15	NA	88461070	88470867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414
transcript_8525.known	chr10	+	1579	9	FSM	ENSMUSG00000053219.16	ENSMUST00000181645.8	1579	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	39.8708853676464	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034467	22059816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_22034618_22047902_22048001_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_85274.known	chr3	+	620	6	FSM	ENSMUSG00000041355.14	ENSMUST00000192495.6	620	6	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_3	1870.91094389872	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGACTCCAGAGGGTGT	3616	False	NA	NA	False	AAGAAA	-10	NA	88486973	88495340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488346_88491043_88491193_88494171_88494250_88495187
transcript_85276.known	chr3	+	1059	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	0	0	0	0	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	2459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3557	False	NA	15	True	AATAAA	-17	NA	88486914	88495726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
transcript_85288.known	chr3	+	1189	5	FSM	ENSMUSG00000041355.14	ENSMUST00000035785.9	1189	5	0	0	0	0	multi-exon	FALSE	canonical	3	4285	junction_2	286.022180083993	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3620	False	NA	15	True	AATAAA	-17	NA	88486977	88495726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
transcript_85289.known	chr3	+	3700	26	FSM	ENSMUSG00000028059.17	ENSMUST00000175903.9	3700	26	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	120.975924877638	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTGCTGATTGTCCT	NA	False	NA	9	True	AGTAAA	-15	NA	88513272	88554236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88513621_88515101_88515247_88521813_88521932_88522788_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540812_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_85296.nnic	chr3	+	3175	24	NNC	ENSMUSG00000028059.17	novel	3065	22	NA	NA	-48	0	intron_retention	FALSE	canonical	3	13	junction_1	80.4191759242328	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTGCTGATTGTCCT	8570	False	NA	9	True	AGTAAA	-15	NA	88522625	88554236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_88522706_88522788_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_85298.nnic	chr3	+	4298	24	NNC	ENSMUSG00000028059.17	novel	3065	22	NA	NA	-48	0	intron_retention	FALSE	canonical	3	13	junction_1	80.4191759242328	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGGAAATGAAGCGCCGT	8570	False	NA	15	True	ATTAAA	-17	NA	88522625	88555359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_88522706_88522788_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_85304.nic	chr3	+	3255	23	NIC	ENSMUSG00000028059.17	novel	3700	26	NA	NA	-45	0	intron_retention	FALSE	canonical	3	134	junction_1	52.3518768361218	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTGCTGATTGTCCT	8573	False	NA	9	True	AGTAAA	-15	NA	88522628	88554236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_85305.nic	chr3	+	4161	23	NIC	ENSMUSG00000028059.17	novel	3700	26	NA	NA	-45	-213	intron_retention	FALSE	canonical	3	134	junction_1	52.3518768361218	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAGAGAGAGAGAGAGA	8573	False	NA	NA	False	AAGAAA	-2	NA	88522628	88555142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_85306.nic	chr3	+	4378	23	NIC	ENSMUSG00000028059.17	novel	3700	26	NA	NA	-45	0	intron_retention	FALSE	canonical	3	134	junction_1	52.3518768361218	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGGAAATGAAGCGCCGT	8573	False	NA	15	True	ATTAAA	-17	NA	88522628	88555359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_88522829_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_85310.known	chr3	+	3966	23	FSM	ENSMUSG00000028059.17	ENSMUST00000177498.8	3966	23	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	70.6950294581072	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTAGCTCCATATCTTT	9394	False	NA	NA	False	TTTAAA	-15	NA	88523449	88554839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_85324.known	chr3	+	3086	22	FSM	ENSMUSG00000028059.17	ENSMUST00000176804.8	3086	22	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	81.2162925021849	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACACTTCCCCCACCCC	NA	False	NA	-57	True	NA	NA	NA	88528431	88554170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540812_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_85329.known	chr3	+	3000	22	FSM	ENSMUSG00000028059.17	ENSMUST00000177303.8	3000	22	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	95.6253317988108	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTGCTGATTGTCCT	NA	False	NA	9	True	AGTAAA	-15	NA	88528861	88554236	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88528907_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540812_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_85363.known	chr3	+	2981	14	FSM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	33.2047619027415	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTAATGTGCATTGTT	8	True	NA	16	True	AATAAA	-16	NA	88593109	88620231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
transcript_85365.known	chr3	+	2567	14	FSM	ENSMUSG00000028060.15	ENSMUST00000198042.5	2567	14	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_11	80.4603618093109	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGCAGCGAGAAGAGGGAT	3	True	NA	NA	False	AAGAAA	-34	NA	88593133	88619869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617164_88617250_88618067_88618160_88618936
transcript_85371.known	chr3	+	1922	14	FSM	ENSMUSG00000028060.15	ENSMUST00000198078.2	1922	14	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	104.955555541635	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGGCATAACATCCGTTA	13	False	NA	NA	False	CATAAA	-33	NA	88593143	88619310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607671_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
transcript_85378.known	chr3	+	3636	13	FSM	ENSMUSG00000028060.15	ENSMUST00000199684.5	3636	13	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_11	83.5129730441125	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTCATTTCTCTTTTT	3	True	NA	13	True	AATAAA	-14	NA	88593133	88620161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617164_88617250_88618067
transcript_8538.known	chr10	+	1274	7	FSM	ENSMUSG00000053219.16	ENSMUST00000065527.11	1274	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	14.8286509463568	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTATGTGCTCCAGAAG	NA	False	NA	2	True	AATAAA	-12	NA	22049419	22059813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_22049436_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_85383.known	chr3	+	2388	10	FSM	ENSMUSG00000028060.15	ENSMUST00000200364.5	2388	10	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_7	30.6195289897731	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTTAAAAAAAATCTGGA	9	True	NA	NA	False	AATGAA	-25	NA	88593139	88608920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567
transcript_85387.nic	chr3	+	2844	9	ISM	ENSMUSG00000028060.15	ENSMUST00000200364.5	2388	10	-77	-127	-47	127	intron_retention	FALSE	canonical	3	344	junction_7	29.8158410077596	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGGGTGTGGTGGCAT	6168	False	NA	NA	False	NA	NA	NA	88593062	88609047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257
transcript_85388.nic	chr3	+	3883	8	ISM	ENSMUSG00000028060.15	ENSMUST00000200364.5	2388	10	-77	-125	-47	125	intron_retention	FALSE	canonical	3	344	junction_7	31.8452892745472	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAATCTGGGTGTGGTGGC	6168	False	NA	NA	False	NA	NA	NA	88593062	88609045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155
transcript_85391.known	chr3	+	1793	2	FSM	ENSMUSG00000028060.15	ENSMUST00000200588.2	1793	2	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAAAGTTGCAT	-10	True	NA	NA	False	NA	NA	NA	88593120	88595369	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88593195_88593650
transcript_85392.known	chr3	+	993	6	FSM	ENSMUSG00000028057.15	ENSMUST00000172333.8	993	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	24.0881713710277	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACGCATGAACTCATCAGG	2278	False	NA	NA	False	NA	NA	NA	88624205	88636855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88624265_88624632_88624778_88624879_88624966_88633301_88633376_88633586_88633779_88636418
transcript_85394.known	chr3	+	1204	6	FSM	ENSMUSG00000028057.15	ENSMUST00000029692.15	1204	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	6.67532770731145	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCTTCAACCTGAACT	2217	False	NA	74	True	NA	NA	NA	88624144	88637034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633376_88633586_88633779_88636418
transcript_85398.known	chr3	-	5020	5	FSM	ENSMUSG00000068923.15	ENSMUST00000107505.8	5020	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	4.38748219369606	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGCTACAGCCTGGGTT	NA	False	NA	-6	True	AATAAA	-23	NA	88682471	88652006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88655318_88656085_88656210_88669032_88669857_88679597_88680298_88682410
transcript_85401.known	chr3	+	6190	19	FSM	ENSMUSG00000078684.9	ENSMUST00000135913.2	6190	19	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	108.309171094649	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTCCACTTTGACGGGC	NA	False	NA	NA	False	NA	NA	NA	88682522	88732894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88682582_88684290_88684822_88691614_88691807_88695643_88695746_88696664_88696706_88702770_88702795_88706921_88707026_88715213_88715410_88715859_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725073_88726971_88727094_88727354_88729107_88730848_88731105_88731656_88731842_88732696
transcript_85412.nic	chr3	+	815	3	ISM	ENSMUSG00000078684.9	ENSMUST00000135913.2	6190	19	-33	41088	-33	-41088	5prime_fragment	FALSE	canonical	3	143	junction_1	22.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGCTTTTTCTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	88682489	88691806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_88682582_88684290_88684822_88691614
transcript_85421.known	chr3	-	2093	15	FSM	ENSMUSG00000068922.15	ENSMUST00000107494.8	2093	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	254.728036244501	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTAACTCGATGCACAAG	NA	False	NA	NA	False	AATAAA	-19	NA	88821238	88812413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88812828_88817045_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820231_88820873_88821010_88821099
transcript_85427.known	chr3	-	1875	14	FSM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	0	0	0	0	multi-exon	FALSE	canonical	3	676	junction_13	37.3331396162909	804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACGCATTTGTACATTTA	NA	False	NA	-7	True	AATAAA	-44	NA	88821306	88816921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
transcript_8543.nnic	chr10	+	1322	7	NNC	ENSMUSG00000078452.11	novel	1271	7	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.5672032106274	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237763	22250038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_22237831_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
transcript_8544.known	chr10	+	1271	7	FSM	ENSMUSG00000078452.11	ENSMUST00000095795.5	1271	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	20.4402924527893	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237792	22250038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_22237809_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
transcript_85452.nic	chr3	+	802	3	ISM	ENSMUSG00000054199.19	ENSMUST00000081695.15	7587	33	-13	63520	-10	164	5prime_fragment	FALSE	canonical	3	15	junction_1	86.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGCTTTTTCTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	88742524	88753886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_88742604_88744296_88744828_88753694
transcript_85456.known	chr3	+	7537	32	FSM	ENSMUSG00000054199.19	ENSMUST00000107498.9	7537	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	95.1387507478449	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTTCGTTTTCTTCATG	NA	False	NA	15	True	AGTAAA	-19	NA	88742537	88817410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_88742604_88744296_88744828_88753694_88753887_88761911_88762103_88762932_88763008_88763121_88763173_88764434_88764534_88765693_88765814_88766195_88766367_88770726_88770920_88776056_88776159_88777109_88777151_88783213_88783238_88787377_88787482_88794212_88794412_88794865_88794953_88796977_88797147_88798119_88798265_88799824_88799976_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544
transcript_85476.nic	chr3	-	1899	13	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-219	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_12	242.200444994545	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857940	88830941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857422
transcript_85478.known	chr3	-	1409	13	FSM	ENSMUSG00000068921.15	ENSMUST00000173135.8	1409	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	248.441964495176	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGGACAGCGGCGGTGGC	NA	False	NA	NA	False	NA	NA	NA	88858488	88831134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858267
transcript_85489.known	chr3	-	1375	12	FSM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	248.490151458566	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88831221_88832600_88832719_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
transcript_8549.known	chr10	-	2873	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTAAGTATTCCCCCT	NA	False	NA	-7	True	AATAAA	-21	NA	22607346	22579777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
transcript_85490.known	chr3	-	1382	11	FSM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	899.425283166979	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009195	89000894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
transcript_85491.known	chr3	-	3316	10	FSM	ENSMUSG00000041263.15	ENSMUST00000052539.13	3316	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	13.9292746170798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	89000618	88991287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88998444_88999869_89000573
transcript_85494.known	chr3	-	1237	10	FSM	ENSMUSG00000059743.13	ENSMUST00000081848.13	1237	10	0	0	0	0	multi-exon	FALSE	canonical	3	1662	junction_9	235.997175124336	3188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009266	89000894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
transcript_85498.known	chr3	-	1922	9	FSM	ENSMUSG00000041263.15	ENSMUST00000166687.6	1922	9	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_8	11.2354072022335	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	88997352	88991287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88997277
transcript_8550.known	chr10	-	1195	7	FSM	ENSMUSG00000071359.14	ENSMUST00000095794.4	1195	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_6	96.5702104976248	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTCTCTTCATATC	NA	False	NA	-15	True	AATAAA	-8	NA	22607837	22581279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607681
transcript_85510.known	chr3	-	2953	1	FSM	ENSMUSG00000059743.13	ENSMUST00000198239.2	2953	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89009198	89006245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89006200_89009200
transcript_85514.known	chr3	-	4002	8	FSM	ENSMUSG00000028051.11	ENSMUST00000029686.4	4002	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.95759752107767	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	89067503	89053380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89055607_89056023_89056189_89057122_89057364_89057661_89057809_89058168_89058388_89058731_89058894_89059937_89060368_89067091
transcript_85516.nic	chr3	-	1604	2	ISM	ENSMUSG00000028051.11	ENSMUST00000029686.4	4002	8	-7	5802	-7	-395	5prime_fragment	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGGCTCTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	89067510	89059182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_89060368_89067091
transcript_85518.nnic	chr3	+	2954	20	Fusion	ENSMUSG00000028049.16_ENSMUSG00000068917.13	novel	2112	13	NA	NA	-33	-10	multi-exon	FALSE	canonical	3	36	junction_12	330.503695169624	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAACTGGAACTCACCCA	NA	False	NA	6	True	ATTAAA	-10	NA	89072068	89090060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
transcript_85520.nnic	chr3	+	2951	20	Fusion	ENSMUSG00000028049.16_ENSMUSG00000068917.13	novel	2154	13	NA	NA	-33	-10	multi-exon	FALSE	canonical	3	36	junction_12	335.943266216698	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAACTGGAACTCACCCA	NA	False	NA	6	True	ATTAAA	-10	NA	89072068	89090060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr3_+_89072414_89074341_89074512_89076001_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
transcript_85524.known	chr3	+	2112	13	FSM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	89.4627094877463	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89072146	89084228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
transcript_85525.known	chr3	+	2128	13	FSM	ENSMUSG00000068917.13	ENSMUST00000090927.12	2128	13	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	141.611043001596	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89072124	89084228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89072414_89074341_89074512_89076004_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
transcript_85530.nic	chr3	+	1895	12	ISM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	-78	953	-33	-3	5prime_fragment	FALSE	canonical	3	250	junction_3	91.6433979984058	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACACTTTACACTTTAATG	NA	False	NA	2	True	AATAAA	-16	NA	89072068	89083275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951
transcript_85540.known	chr3	+	1885	12	FSM	ENSMUSG00000068917.13	ENSMUST00000128318.8	1885	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	144.088987655672	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89072285	89084228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
transcript_85549.known	chr3	+	3168	11	FSM	ENSMUSG00000068917.13	ENSMUST00000138822.8	3168	11	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_2	65.9302661908778	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCCCCCAATCCCTGGA	NA	False	NA	16	True	AATAAA	-17	NA	89072125	89084226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89072414_89074341_89074512_89076001_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
transcript_8555.known	chr10	-	129	2	FSM	ENSMUSG00000118528.2	ENSMUST00000238910.2	129	2	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCGTGGTGGGAACCAAG	NA	False	NA	NA	False	CATAAA	-39	NA	22607136	22587983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_22587991_22607014
transcript_85561.known	chr3	+	1475	9	FSM	ENSMUSG00000028049.16	ENSMUST00000120697.8	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_2	249.13701049824	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084796	89090072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
transcript_85563.known	chr3	+	1489	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	0	0	0	0	multi-exon	TRUE	canonical	3	743	junction_2	141.598022585063	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084779	89090072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
transcript_85568.known	chr3	+	1338	8	FSM	ENSMUSG00000028049.16	ENSMUST00000098941.5	1338	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	394.282971004949	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCACCCATTTCCTGTAT	NA	False	NA	16	True	ATTAAA	-20	NA	89084826	89090070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89089232_89089351_89089605
transcript_8558.known	chr10	-	584	6	FSM	ENSMUSG00000061983.8	ENSMUST00000218107.2	584	6	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_5	774.773670177298	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663173	23661080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
transcript_85582.known	chr3	+	3083	12	FSM	ENSMUSG00000032657.16	ENSMUST00000041913.13	3083	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	4.5924839782964	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGGAGTATTCTGTTAT	1723	False	NA	9	True	AATAAA	-20	NA	89090509	89096598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89091256_89091458_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092740_89092917_89093040_89093141_89094085_89094156_89094365_89094912_89095382_89095452_89095529_89095784_89095872
transcript_85584.nic	chr3	+	3143	12	NIC	ENSMUSG00000032657.16	novel	3083	12	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	7.00649049745371	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGGAGTATTCTGTT	1658	False	NA	7	True	AATAAA	-18	NA	89090444	89096596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_89091256_89091458_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092743_89092917_89093040_89093141_89094085_89094156_89094365_89094912_89095382_89095452_89095529_89095784_89095872
transcript_85593.known	chr3	+	1938	12	FSM	ENSMUSG00000028048.12	ENSMUST00000167998.2	1938	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	111.217603696091	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	False	NA	3	True	ATTAAA	-13	NA	89110246	89115988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
transcript_85595.known	chr3	+	1779	11	FSM	ENSMUSG00000028048.12	ENSMUST00000077367.11	1779	11	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	28.1177879642051	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTCCTGTGCTATCTGTG	NA	False	NA	1	True	ATTAAA	-11	NA	89110234	89115986	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89110394_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
transcript_85599.known	chr3	+	3190	23	FSM	ENSMUSG00000028047.12	ENSMUST00000029682.11	3190	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.85061976732276	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGCAATTGTTTATTT	5777	False	NA	5	True	CATAAA	-19	NA	89122486	89134144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89122632_89123987_89124195_89124991_89125249_89125334_89125438_89126163_89126191_89126353_89126437_89126519_89126572_89126695_89126845_89127161_89127303_89127458_89127537_89128264_89128418_89128640_89128752_89128833_89128942_89130309_89130470_89130711_89130831_89130937_89130991_89131266_89131461_89131592_89131772_89131883_89131933_89132116_89132314_89132558_89132732_89133610_89133751_89133832
transcript_856.nic	chr1	+	871	7	ISM	ENSMUSG00000026126.16	ENSMUST00000027302.14	1559	15	11668	0	-1287	0	3prime_fragment	FALSE	canonical	2	6	junction_1	3.74165738677394	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCTTTGTTCCAGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	34510513	34512865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_34510641_34510721_34510800_34510892_34510983_34511183_34511273_34511843_34512050_34512415_34512491_34512659
transcript_8560.known	chr10	-	494	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	3174	junction_1	596.623153674076	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23662987	23661095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
transcript_85602.known	chr3	-	892	8	FSM	ENSMUSG00000064068.16	ENSMUST00000173477.8	892	8	0	0	0	0	multi-exon	FALSE	canonical	1	38	junction_5	268.396143407312	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGATGGCGTTCCTGTTC	NA	False	NA	-148	True	NA	NA	NA	89121147	89116519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117981_89119989_89120070_89120183_89120254_89121119
transcript_85604.known	chr3	-	1197	7	FSM	ENSMUSG00000064068.16	ENSMUST00000119222.9	1197	7	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_1	41.3417330174835	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAACTGGGATCAAAGAAT	NA	False	NA	-27	True	AATAAA	-10	NA	89121214	89116398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117984_89119989_89120254_89121119
transcript_85606.nic	chr3	-	1573	7	NIC	ENSMUSG00000064068.16	novel	1522	8	NA	NA	-38	0	intron_retention	FALSE	canonical	3	739	junction_1	41.4286535302963	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAACTGGGATCAAAGAAT	NA	False	NA	-27	True	AATAAA	-10	NA	89121257	89116398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_89116729_89116811_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119
transcript_85612.known	chr3	+	455	2	FSM	ENSMUSG00000028047.12	ENSMUST00000153129.2	455	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCCAGGAAAGACAACAGC	NA	False	NA	-46	True	NA	NA	NA	89133556	89134093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89133751_89133832
transcript_85613.known	chr3	+	2242	7	FSM	ENSMUSG00000042784.10	ENSMUST00000041142.4	2242	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.60727512683216	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGCTGTGGTTTTTCAT	205	False	NA	8	True	AATAAA	-21	NA	89136363	89140688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89136485_89137217_89138522_89138619_89138673_89138807_89138942_89139069_89139192_89139272_89139423_89140330
transcript_85614.known	chr3	+	582	5	FSM	ENSMUSG00000042747.13	ENSMUST00000168900.3	582	5	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	789.56613877496	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTCTTTGTAGCTGTG	7591	False	NA	7	True	AATAAA	-1	NA	89153740	89157016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89153901_89154087_89154240_89154371_89154436_89156380_89156448_89156877
transcript_85619.known	chr3	+	404	2	FSM	ENSMUSG00000042737.10	ENSMUST00000040824.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	0	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	6777	False	NA	17	True	ATTAAA	-18	NA	89173858	89174384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89173914_89174035
transcript_85620.known	chr3	-	1022	6	FSM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_5	11.5481600266016	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177877	89175552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177692
transcript_85623.known	chr3	-	1086	5	FSM	ENSMUSG00000027953.14	ENSMUST00000132445.8	1086	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	12.4373429638327	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177830	89175552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177447_89177692
transcript_85624.known	chr3	-	1176	5	FSM	ENSMUSG00000027953.14	ENSMUST00000133575.8	1176	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.3697808371514	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177833	89175552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176606_89177133_89177447_89177692
transcript_85626.known	chr3	-	1332	4	FSM	ENSMUSG00000027953.14	ENSMUST00000144777.8	1332	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_3	10.1434160364686	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGCAGAGTGATGTGTT	NA	False	NA	-33	True	AATAAA	-15	NA	89177832	89175554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133
transcript_85627.known	chr3	-	1480	5	FSM	ENSMUSG00000027954.10	ENSMUST00000029566.9	1480	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	2.77263412660235	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTCTGCCCCACCATG	1666	False	NA	NA	False	AATAAA	-21	NA	89186952	89179039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89179912_89180078_89180130_89180263_89180330_89183436_89183733_89186757
transcript_85628.known	chr3	-	2363	5	FSM	ENSMUSG00000028039.12	ENSMUST00000029673.10	2363	5	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	13.4047566184545	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAATGTCTCTTAACTGT	9189	False	NA	NA	False	NA	NA	NA	89230272	89221205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89222875_89223114_89223193_89223376_89223443_89223769_89224060_89230012
transcript_8563.nic	chr10	+	2788	14	NIC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	40.4205700752365	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTGTATTCATTCAAA	NA	False	NA	24	True	AATAAA	-17	NA	23672883	23703866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23680935_23681044_23681790_23681939_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
transcript_85630.known	chr3	-	742	4	FSM	ENSMUSG00000028039.12	ENSMUST00000200436.2	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	91.0103779186137	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTTCCCATGGTTGGG	9267	False	NA	NA	False	NA	NA	NA	89230194	89222670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89222875_89223376_89223443_89223769_89224060_89230012
transcript_85636.known	chr3	-	3914	24	FSM	ENSMUSG00000028041.18	ENSMUST00000184651.8	3914	24	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	40.1114232606179	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGACAGCCTTGGTAA	NA	False	NA	NA	False	NA	NA	NA	89257289	89245848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89246174_89246318_89247261_89247361_89247487_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_85638.nnic	chr3	-	3067	24	NNC	ENSMUSG00000028041.18	novel	2975	23	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	40.1852515525789	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATGTGTCTGCTCCTGGA	NA	False	NA	-19	True	AATAAA	-12	NA	89257339	89246954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_89247261_89247361_89247487_89247707_89247780_89248019_89248084_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_8564.known	chr10	+	2837	14	FSM	ENSMUSG00000037455.17	ENSMUST00000119597.8	2837	14	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_6	14.8148334428987	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTGTATTCATTCAAA	NA	False	NA	24	True	AATAAA	-17	NA	23672883	23703866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
transcript_85651.known	chr3	-	2975	23	FSM	ENSMUSG00000028041.18	ENSMUST00000029676.12	2975	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	32.1478056009843	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCCTGGAAGCTGGGT	NA	False	NA	-11	True	AATAAA	-20	NA	89257303	89246946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_85653.nnic	chr3	-	3065	23	NNC	ENSMUSG00000028041.18	novel	2975	23	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	39.5830542254913	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATGTGTCTGCTCCTGGA	NA	False	NA	-19	True	AATAAA	-12	NA	89257339	89246954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_89247261_89247361_89247487_89247707_89247780_89248420_89248558_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_85659.known	chr3	-	2893	22	FSM	ENSMUSG00000028041.18	ENSMUST00000107448.9	2893	22	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	33.3036602620203	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCCTGGAAGCTGGGT	NA	False	NA	-11	True	AATAAA	-20	NA	89257296	89246946	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_8566.nic	chr10	+	2694	13	NIC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	23.1336695460678	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTGTATTCATTCAAA	NA	False	NA	24	True	AATAAA	-17	NA	23672869	23703866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
transcript_85668.known	chr3	-	2799	21	FSM	ENSMUSG00000028041.18	ENSMUST00000074582.7	2799	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	31.553882486946	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATGTGTCTGCTCCTGGA	NA	False	NA	-19	True	AATAAA	-12	NA	89257282	89246954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89247261_89247361_89247487_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_85678.known	chr3	-	1034	6	FSM	ENSMUSG00000028041.18	ENSMUST00000155295.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	16.0549057923116	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATAGGTTTTGATTTGCT	NA	False	NA	NA	False	ATTAAA	-24	NA	89257267	89253834	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_8568.known	chr10	+	2416	7	FSM	ENSMUSG00000037440.9	ENSMUST00000041416.8	2416	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.59861050777091	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTGGCTCTCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	23770585	23781241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_23770990_23773190_23773322_23774305_23774499_23775291_23775584_23776482_23776842_23779283_23779455_23780375
transcript_85682.known	chr3	-	1599	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCTTCTTTGTGTGGCC	1612	False	NA	NA	False	AATAAA	-14	NA	89245335	89240696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
transcript_85690.nic	chr3	-	3842	4	NIC	ENSMUSG00000028042.16	novel	3851	3	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	12.2836838484589	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCCACTTTTGGTTC	NA	False	NA	-9	True	AAGAAA	-23	NA	89301001	89284950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_89287302_89287650_89288823_89300341_89300443_89300783
transcript_85691.nic	chr3	-	3704	4	NIC	ENSMUSG00000028042.16	novel	3851	3	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	13.5728487143349	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCCACTTTTGGTTC	NA	False	NA	-9	True	AAGAAA	-23	NA	89301000	89284950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_89287302_89287650_89288823_89300341_89300443_89300920
transcript_85697.nic	chr3	-	2195	4	NIC	ENSMUSG00000028042.16	novel	3851	3	NA	NA	-16	-1647	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	12.2836838484589	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTGTGTATATATATA	NA	False	NA	NA	False	NA	NA	NA	89301001	89286597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_89287302_89287650_89288823_89300341_89300443_89300783
transcript_8570.known	chr10	+	3435	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_6	15.4632180063243	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTTAGAATTGCTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	24025224	24066120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
transcript_85701.known	chr3	-	3650	3	FSM	ENSMUSG00000028042.16	ENSMUST00000107433.8	3650	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	20	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCCACTTTTGGTTC	NA	False	NA	-9	True	AAGAAA	-23	NA	89294496	89284950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89287302_89287650_89288823_89294369
transcript_85702.known	chr3	-	3639	3	FSM	ENSMUSG00000028042.16	ENSMUST00000107432.8	3639	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	17.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCCACTTTTGGTTC	NA	False	NA	-9	True	AAGAAA	-23	NA	89299376	89284950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89287302_89287650_89288823_89299260
transcript_85709.known	chr3	+	923	2	FSM	ENSMUSG00000074466.13	ENSMUST00000145400.8	923	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTAGGGTTGTTT	5257	False	NA	NA	False	NA	NA	NA	89299156	89305531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89299814_89305265
transcript_85711.known	chr3	-	3007	9	FSM	ENSMUSG00000042642.14	ENSMUST00000050398.11	3007	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	111.881633881527	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	3737	False	NA	NA	False	NA	NA	NA	89319177	89308310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89309620_89310476_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319090
transcript_85716.known	chr3	-	2238	8	FSM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_7	99.0019583397321	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCCTTCTGCTGAGCTGC	3738	False	NA	NA	False	AATAAA	-21	NA	89319176	89309973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319052
transcript_85717.known	chr3	-	2892	8	FSM	ENSMUSG00000042642.14	ENSMUST00000129308.9	2892	8	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_7	45.7504321380282	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAATGAGGGCATGTGTG	3744	False	NA	0	True	AATAAA	-35	NA	89319170	89309275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319090
transcript_8572.known	chr10	+	2398	5	FSM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.81534007106456	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGGCTTGGCTGTTCAT	NA	False	NA	5	True	AATAAA	-21	NA	24471339	24474576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
transcript_85725.nic	chr3	-	2014	8	NIC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	-5	-415	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	114.072300739129	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3732	False	NA	-15	True	AGTAAA	-18	NA	89319182	89310388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89318867
transcript_85728.nic	chr3	-	1793	8	NIC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	-41	-415	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	105.155666921542	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3696	False	NA	-15	True	AGTAAA	-18	NA	89319218	89310388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319124
transcript_8573.known	chr10	-	6777	25	FSM	ENSMUSG00000037370.14	ENSMUST00000105520.8	6777	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.10554159678513	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTATT	7747	False	NA	NA	False	AATAAA	-19	NA	24588056	24513811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_24517875_24521175_24521339_24523050_24523184_24523914_24523996_24525141_24525272_24527142_24527295_24528732_24528785_24529800_24529968_24530785_24530874_24531700_24531771_24533002_24533131_24533736_24533769_24536047_24536180_24537764_24537874_24540452_24540526_24540808_24540875_24544906_24545017_24545577_24545698_24545840_24545921_24547912_24548011_24550512_24550574_24551875_24552002_24553810_24553928_24555085_24555159_24587703
transcript_8575.known	chr10	+	5098	30	FSM	ENSMUSG00000019984.17	ENSMUST00000092646.13	5098	30	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_10	16.8422067632588	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTACAGCCTGGAGACT	NA	False	NA	NA	False	AATAAA	-26	NA	24745883	24789579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24759101_24759120_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
transcript_85751.known	chr3	-	488	3	FSM	ENSMUSG00000042642.14	ENSMUST00000162701.2	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	149	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGAGGAGCTCAAACCAC	3737	False	NA	NA	False	NA	NA	NA	89319177	89316261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89316474_89318464_89318688_89319124
transcript_85752.known	chr3	-	766	3	FSM	ENSMUSG00000028044.7	ENSMUST00000107422.2	766	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	1287.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTATTGGAAATTTTGC	NA	False	NA	23	True	NA	NA	NA	89325324	89322863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89323271_89323580_89323709_89325093
transcript_85753.known	chr3	-	849	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89325690	89322778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89323271_89323580_89323709_89325461
transcript_85765.known	chr3	+	3079	13	FSM	ENSMUSG00000042626.14	ENSMUST00000107417.9	3079	13	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	89.6222008705928	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89325920	89337322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_85767.nic	chr3	+	3118	13	NIC	ENSMUSG00000042626.14	novel	2617	12	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	152.973558898988	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89328920	89337322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_89329056_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_8577.known	chr10	+	4798	29	FSM	ENSMUSG00000019984.17	ENSMUST00000020159.15	4798	29	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_7	9.84419439392103	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGACTGCTTTGTAAC	NA	False	NA	13	True	AATAAA	-20	NA	24745944	24789358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
transcript_85776.nic	chr3	+	3150	12	NIC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	-68	0	combination_of_known_junctions	TRUE	canonical	3	123	junction_1	129.584906273394	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89325681	89337322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_89326017_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_85778.known	chr3	+	2617	12	FSM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	37.6308735565373	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCACGCCTTTAATCACAGC	NA	False	NA	NA	False	NA	NA	NA	89328934	89336406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_85790.known	chr3	+	584	3	FSM	ENSMUSG00000047824.14	ENSMUST00000136573.8	584	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	130	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCCCTGGCTACCCGCC	NA	False	NA	NA	False	NA	NA	NA	89337520	89340050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89337761_89338433_89338484_89339756
transcript_85791.known	chr3	+	382	3	FSM	ENSMUSG00000047824.14	ENSMUST00000133680.2	382	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	131.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCGGCAGCCCCCTCCTT	NA	False	NA	NA	False	NA	NA	NA	89338046	89339989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89338146_89338433_89338484_89339756
transcript_85794.nic	chr3	+	2512	11	NIC	ENSMUSG00000042613.10	novel	4479	11	NA	NA	0	-1988	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	22.5690052948729	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAGAAGAAGAAAAAAAAAA	4368	False	NA	NA	False	NA	NA	NA	89344012	89356271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_89344088_89346823_89346909_89350407_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
transcript_85797.known	chr3	+	4479	11	FSM	ENSMUSG00000042613.10	ENSMUST00000038942.10	4479	11	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	11.4367827643966	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTTCTTCTCTTCTC	4368	False	NA	35	True	AATAAA	-24	NA	89344012	89358259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89344088_89346823_89346909_89350428_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
transcript_85801.nic	chr3	+	2665	11	NIC	ENSMUSG00000042613.10	novel	4479	11	NA	NA	0	-1988	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	25.7984495658169	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAGAAGAAGAAAAAAAAAA	4368	False	NA	NA	False	NA	NA	NA	89344012	89356271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_89344262_89346823_89346909_89350428_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
transcript_85812.nnic	chr3	+	1213	6	NNC	ENSMUSG00000027952.17	novel	1194	5	NA	NA	-11	26517	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	269.5838274081	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTGCTGTGGCTGTGTTG	129	False	NA	NA	False	NA	NA	NA	89366413	89402837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89398000_89398206_89402534
transcript_85815.known	chr3	+	1194	5	FSM	ENSMUSG00000027952.17	ENSMUST00000029564.12	1194	5	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_1	43.1878165690279	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGGAGACTGATGATT	140	False	NA	21	True	AATAAA	-20	NA	89366424	89376320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89375820
transcript_85817.nnic	chr3	+	1008	5	NNC	ENSMUSG00000027952.17	novel	1194	5	NA	NA	-11	26517	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_4	230.312152306386	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTGCTGTGGCTGTGTTG	129	False	NA	NA	False	NA	NA	NA	89366413	89402837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89402534
transcript_8582.nic	chr10	-	2338	8	NIC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	-43	-4	combination_of_known_junctions	FALSE	canonical	3	110	junction_5	10.3430939199417	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCTTTTCTTCTTTTCT	NA	False	NA	-4	True	AATAAA	-15	NA	25173014	25044991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25172825
transcript_85820.known	chr3	+	1156	5	FSM	ENSMUSG00000027952.17	ENSMUST00000184515.2	1156	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	260.03076741032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTCAGAGCTGGAGACT	593	False	NA	14	True	AATAAA	-13	NA	89366877	89376313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89367194_89369188_89369253_89371602_89371756_89374853_89374984_89375820
transcript_85824.known	chr3	+	2884	8	FSM	ENSMUSG00000000794.10	ENSMUST00000000811.8	2884	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.57790871674104	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTGGTATTAGGTTTGGG	4079	False	NA	NA	False	NA	NA	NA	89427470	89575068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89428712_89472165_89472262_89516624_89517044_89552748_89552891_89559324_89559436_89568427_89568556_89570020_89570091_89574391
transcript_8583.nic	chr10	-	1701	8	NIC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	-43	196	combination_of_known_junctions	FALSE	canonical	3	110	junction_5	10.3430939199417	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCAACAGTATTCTAAGG	NA	False	NA	NA	False	AATAAA	-1	NA	25173014	25045628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496_25165629_25172825
transcript_85832.nic	chr3	+	3791	15	NIC	ENSMUSG00000027951.17	novel	5909	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_7	26.0458778907919	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCATATGTAGCACAGACA	NA	False	NA	20	True	ATTAAA	-20	NA	89622328	89658713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_89622458_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652831_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
transcript_85834.nic	chr3	+	5831	15	NIC	ENSMUSG00000027951.17	novel	5909	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_7	26.0458778907919	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGTTACAAAGTTTTAT	NA	False	NA	12	True	AATAAA	-16	NA	89622328	89660753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_89622458_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652831_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
transcript_85836.known	chr3	+	5909	15	FSM	ENSMUSG00000027951.17	ENSMUST00000098924.9	5909	15	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_7	20.181320925195	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGTTACAAAGTTTTAT	NA	False	NA	12	True	AATAAA	-16	NA	89622328	89660753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89622458_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652909_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
transcript_85841.known	chr3	+	3753	15	FSM	ENSMUSG00000027951.17	ENSMUST00000029563.14	3753	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	36.4602803173032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCATATGTAGCACAGACA	NA	False	NA	20	True	ATTAAA	-20	NA	89638054	89658713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89638146_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652831_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
transcript_85844.known	chr3	+	5871	15	FSM	ENSMUSG00000027951.17	ENSMUST00000107405.6	5871	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.9626411909864	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGTTACAAAGTTTTAT	NA	False	NA	12	True	AATAAA	-16	NA	89638054	89660753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89638146_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652909_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
transcript_85856.known	chr3	+	1668	1	FSM	ENSMUSG00000027951.17	ENSMUST00000197253.2	1668	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAGAAGAAGAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	89622328	89623996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89622300_89624000
transcript_85857.known	chr3	+	3077	13	FSM	ENSMUSG00000042572.13	ENSMUST00000038356.13	3077	13	0	0	0	0	multi-exon	TRUE	canonical	3	944	junction_1	76.7428968844819	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGGTTCATGTCCACTT	NA	False	NA	NA	False	AATAAA	-43	NA	89680922	89691307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89681346_89683383_89683489_89683818_89683924_89684537_89684589_89686735_89686877_89687061_89687147_89687743_89687805_89687993_89688085_89688195_89688255_89688353_89688403_89688674_89688771_89689077_89689145_89689563
transcript_85858.nnic	chr3	+	5869	7	NNC	ENSMUSG00000046280.10	novel	5733	6	NA	NA	-251	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	21.0844861344913	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTCATTTGCTTTGTT	2628	False	NA	26	True	AATAAA	-14	NA	89738425	89766144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_89739411_89741450_89741578_89756674_89756981_89758915_89759058_89759673_89759794_89761837_89764487_89764604
transcript_85859.known	chr3	+	5733	6	FSM	ENSMUSG00000046280.10	ENSMUST00000050401.6	5733	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	6.34350061086148	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACAGTCATTTGCTTT	2879	False	NA	23	True	AATAAA	-11	NA	89738676	89766141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89739411_89741450_89741578_89756674_89756981_89758915_89759058_89759673_89759794_89761837
transcript_85864.known	chr3	-	8639	10	FSM	ENSMUSG00000027947.12	ENSMUST00000197679.5	8639	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	3.80058475033046	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAGCCAAGTGTCCTTG	NA	False	NA	NA	False	AATAAA	-16	NA	89820503	89771365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89778694_89784115_89784216_89785150_89785221_89786155_89786200_89793208_89793351_89793848_89794016_89794328_89794514_89796493_89796618_89797543_89797781_89820261
transcript_85866.known	chr3	-	3343	10	FSM	ENSMUSG00000027947.12	ENSMUST00000029559.7	3343	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	3.80058475033046	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCAGGGGATCGGCGAC	NA	False	NA	NA	False	ATTAAA	-17	NA	89820469	89776630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89778694_89784115_89784216_89785150_89785221_89786155_89786203_89793208_89793351_89793848_89794016_89794328_89794514_89796493_89796618_89797543_89797781_89820261
transcript_85872.known	chr3	-	5559	27	FSM	ENSMUSG00000060671.13	ENSMUST00000069805.14	5559	27	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_26	26.7970677544519	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATTTGTCTCTTTTCTTT	3812	False	NA	1	True	TATAAA	-43	NA	89867936	89846787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89848739_89848981_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931_89854097_89855110_89855227_89855353_89855543_89855693_89855860_89856275_89856320_89857115_89857325_89859981_89860179_89861508_89861598_89861746_89861906_89864317_89864398_89864604_89864676_89865115_89865189_89865284_89865347_89865595_89865695_89865815_89865930_89866297_89866357_89867591
transcript_85879.known	chr3	-	3509	29	FSM	ENSMUSG00000042520.17	ENSMUST00000029553.16	3509	29	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	263.472271321105	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3557	False	NA	-9	True	AATAAA	-21	NA	89959772	89907446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89907561_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
transcript_8589.known	chr10	-	397	3	FSM	ENSMUSG00000039166.17	ENSMUST00000177124.2	397	3	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_2	4.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTCCATTCCGATCAC	NA	False	NA	42	True	AAAAAG	-18	NA	25172971	25159820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_25159940_25165496_25165629_25172825
transcript_85898.known	chr3	-	4073	28	FSM	ENSMUSG00000042520.17	ENSMUST00000064639.15	4073	28	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	252.379539778417	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCAGCCTCTGCCCATT	3547	False	NA	NA	False	AAAAAG	-23	NA	89959782	89907594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
transcript_85900.known	chr3	-	3975	28	FSM	ENSMUSG00000042520.17	ENSMUST00000196843.5	3975	28	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	196.719480946381	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTACCTTCAGCCTCTGC	3560	False	NA	99	True	AAAAAG	-18	NA	89959769	89907599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
transcript_85912.known	chr3	-	3516	26	FSM	ENSMUSG00000042520.17	ENSMUST00000195995.5	3516	26	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_21	259.732465433184	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGCGTTCTTTCCGT	3550	False	NA	-4	True	AATAAA	-19	NA	89959779	89913526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
transcript_85916.known	chr3	-	3494	26	FSM	ENSMUSG00000042520.17	ENSMUST00000199834.5	3494	26	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_21	230.048746138726	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGCGTTCTTTCCGT	3507	False	NA	-4	True	AATAAA	-19	NA	89959822	89913526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
transcript_85918.nic	chr3	-	3501	26	NIC	ENSMUSG00000042520.17	novel	3494	26	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	320	junction_1	177.654063843189	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGCGTTCTTTCCGT	3467	False	NA	-4	True	AATAAA	-19	NA	89959862	89913526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
transcript_85921.known	chr3	-	3629	25	FSM	ENSMUSG00000042520.17	ENSMUST00000090908.11	3629	25	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_17	264.856079891619	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTATGCTTTTATGTC	3570	False	NA	NA	False	AATAAA	-18	NA	89959759	89913300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
transcript_8593.known	chr10	+	4385	20	FSM	ENSMUSG00000019978.17	ENSMUST00000053748.16	4385	20	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_12	117.367122957183	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTGTCACTTCTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	25235695	25399413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25369464_25369528_25371342_25371490_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
transcript_85931.known	chr3	+	1545	10	FSM	ENSMUSG00000118504.2	ENSMUST00000239076.2	1545	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	192.823529633307	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGATTTGGGCTGGCAGG	NA	False	NA	7	True	AATAAA	-16	NA	89960210	89973179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944_89969240_89970515_89970557_89971731_89971862_89972816
transcript_85939.known	chr3	+	1411	7	FSM	ENSMUSG00000027942.18	ENSMUST00000162114.8	1411	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_6	165.248718267008	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTTGTTTGGGCTTTG	NA	False	NA	NA	False	ATTAAA	-43	NA	89960148	89968301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89967668
transcript_85942.known	chr3	+	2510	7	FSM	ENSMUSG00000027942.18	ENSMUST00000160640.8	2510	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	33.2549077413979	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGGAAAACACAGAGCA	NA	False	NA	NA	False	NA	NA	NA	89960120	89970648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944
transcript_85948.known	chr3	-	855	7	FSM	ENSMUSG00000027944.14	ENSMUST00000198782.2	855	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_6	657.328853940113	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTCTTAAACAGAGGCCTT	7498	False	NA	NA	False	NA	NA	NA	89905696	89902931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905631
transcript_85952.nic	chr3	-	1251	7	NIC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	656.238629531125	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7171	False	NA	NA	False	AATAAA	-19	NA	89906023	89902759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905411_89905834
transcript_85956.known	chr3	+	1080	6	FSM	ENSMUSG00000027942.18	ENSMUST00000029552.13	1080	6	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	34.2496715312717	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	89960143	89966404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048
transcript_85958.known	chr3	-	648	6	FSM	ENSMUSG00000027944.14	ENSMUST00000197725.5	648	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	740.896591974885	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCCTTCCTGTTGCCCA	7267	False	NA	NA	False	NA	NA	NA	89905927	89902900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905834
transcript_85962.known	chr3	-	410	5	FSM	ENSMUSG00000042520.17	ENSMUST00000196633.5	410	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_4	452.040028647906	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGACAAAAGGATGGTGGA	3940	False	NA	NA	False	AAGAAA	-8	NA	89959389	89946286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959335
transcript_85967.known	chr3	-	2271	4	FSM	ENSMUSG00000042520.17	ENSMUST00000198282.2	2271	4	0	0	0	0	multi-exon	FALSE	canonical	3	707	junction_3	238.630816674349	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACTCAAAAAAAGAAAAAA	3520	False	NA	NA	False	NA	NA	NA	89959809	89949102	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89951118_89952160_89952239_89955076_89955207_89959761
transcript_85968.known	chr3	+	453	2	FSM	ENSMUSG00000027942.18	ENSMUST00000162595.2	453	2	0	0	0	0	multi-exon	FALSE	canonical	3	516	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTTTCATTCCACAGTC	NA	False	NA	NA	False	TTTAAA	-21	NA	89960160	89961001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89960427_89960814
transcript_85969.known	chr3	-	1092	7	FSM	ENSMUSG00000027944.14	ENSMUST00000197767.5	1092	7	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	640.345588118027	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7221	False	NA	NA	False	AATAAA	-19	NA	89905973	89902759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904873_89905044_89905311_89905834
transcript_85970.known	chr3	-	1280	6	FSM	ENSMUSG00000027944.14	ENSMUST00000199014.5	1280	6	0	0	0	0	multi-exon	FALSE	canonical	3	1706	junction_4	119.761429517186	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7201	False	NA	NA	False	AATAAA	-15	NA	89905993	89902763	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89905311_89905834
transcript_85971.known	chr3	-	857	6	FSM	ENSMUSG00000027944.14	ENSMUST00000197786.5	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	742.362876226984	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7210	False	NA	NA	False	AATAAA	-16	NA	89905984	89902762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89905108_89905311_89905834
transcript_85979.known	chr3	+	2230	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	0	0	0	0	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	2217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGGCTTGACTTTGTTA	NA	False	NA	18	True	AATAAA	-21	NA	89986846	90008208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
transcript_85995.known	chr3	+	291	1	FSM	ENSMUSG00000104649.2	ENSMUST00000198020.2	291	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCATTCTCAAGTCAGT	NA	False	NA	-55	True	NA	NA	NA	90034073	90034364	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90034100_90034400
transcript_85996.known	chr3	-	458	5	FSM	ENSMUSG00000090733.7	ENSMUST00000195998.5	458	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	9237.94281753248	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120954	90119973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687_90120801_90120916
transcript_85997.known	chr3	-	546	4	FSM	ENSMUSG00000090733.7	ENSMUST00000200305.2	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8789.54951443285	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120930	90119977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687
transcript_85998.known	chr3	-	345	4	FSM	ENSMUSG00000090733.7	ENSMUST00000170122.4	345	4	0	0	0	0	multi-exon	FALSE	canonical	3	13930	junction_3	2970.01597451746	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120958	90119977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120916
transcript_85999.known	chr3	-	640	3	FSM	ENSMUSG00000090733.7	ENSMUST00000199031.5	640	3	0	0	0	0	multi-exon	TRUE	canonical	3	15374	junction_1	2726.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120941	90119973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90120061_90120240_90120352_90120499
transcript_86001.known	chr3	-	672	2	FSM	ENSMUSG00000090733.7	ENSMUST00000199428.2	672	2	0	0	0	0	multi-exon	FALSE	canonical	3	20827	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTTAGCACTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	90120953	90120133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90120352_90120499
transcript_86002.known	chr3	+	1415	8	FSM	ENSMUSG00000027935.15	ENSMUST00000107373.8	1415	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	8.56666534317997	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGGCAAGTTGATTTCT	NA	False	NA	NA	False	AATACA	-17	NA	90121001	90133692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90121130_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
transcript_86003.known	chr3	+	1107	8	FSM	ENSMUSG00000027935.15	ENSMUST00000065418.7	1107	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	3.88613443106727	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCCCATTTGCATTACT	NA	False	NA	6	True	ATTAAA	-18	NA	90128093	90133276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90128330_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
transcript_86005.known	chr3	+	878	5	FSM	ENSMUSG00000027937.16	ENSMUST00000119304.2	878	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	145.055808225662	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACTGTATTATGGTGG	NA	False	NA	NA	False	AAAAAG	-32	NA	90138918	90142851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142603
transcript_86006.known	chr3	+	1101	5	FSM	ENSMUSG00000027937.16	ENSMUST00000029546.15	1101	5	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_4	18.2260116317312	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138903	90143145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142689
transcript_86009.nic	chr3	+	1381	4	NIC	ENSMUSG00000027937.16	novel	1101	5	NA	NA	-84	0	intron_retention	FALSE	canonical	3	314	junction_3	19.2527054375915	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138819	90143145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_90139348_90139501_90139819_90141229_90141310_90142689
transcript_86011.known	chr3	-	1404	10	FSM	ENSMUSG00000027938.12	ENSMUST00000107369.2	1404	10	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_7	1.89215404065849	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAAGTTTTTCACTATG	NA	False	NA	NA	False	AATAAA	-19	NA	90150450	90144876	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90145229_90145356_90145454_90145618_90145704_90145789_90145859_90145951_90146059_90146190_90146287_90149238_90149361_90149517_90149753_90150028_90150144_90150324
transcript_86014.known	chr3	+	2364	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	8.60232526704263	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATGGTATCTGATTCT	NA	False	NA	-1	True	AATAAA	-16	NA	90155478	90160919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
transcript_86016.known	chr3	+	2747	14	FSM	ENSMUSG00000027936.19	ENSMUST00000029545.15	2747	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	29.1612533719806	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTTGGCTATTTGGT	NA	False	NA	NA	False	AATAAA	-19	NA	90161469	90171432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90161866_90164423_90164526_90164601_90164719_90165771_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170477_90170665_90170786
transcript_86022.known	chr3	+	2214	10	FSM	ENSMUSG00000027936.19	ENSMUST00000136970.8	2214	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	29.0814097846327	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGTGTGCTTGGCTAT	NA	False	NA	NA	False	AATAAA	-14	NA	90161647	90171427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90161866_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170477_90170665_90170786
transcript_86024.known	chr3	+	5647	28	FSM	ENSMUSG00000042404.17	ENSMUST00000129564.8	5647	28	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_1	11.4060845793856	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGTTCTCTGGATT	NA	False	NA	32	True	AGTAAA	-26	NA	90172491	90187976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90172869_90174719_90175060_90175549_90175803_90176054_90176125_90176294_90176465_90176540_90176786_90177361_90177429_90177519_90177579_90177753_90177899_90178135_90178312_90178440_90178542_90178873_90179090_90179562_90179709_90180021_90180162_90180243_90180371_90181110_90181318_90181595_90181725_90182752_90182952_90183529_90183698_90184186_90184576_90184727_90184851_90185041_90185212_90185294_90185437_90185617_90185855_90186466_90186594_90186684_90186851_90186926_90186992_90187083
transcript_86026.known	chr3	+	5423	28	FSM	ENSMUSG00000042404.17	ENSMUST00000098914.10	5423	28	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	13.5989993983561	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGTTCTCTGGATT	NA	False	NA	32	True	AGTAAA	-26	NA	90173820	90187976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90173974_90174719_90175060_90175549_90175803_90176054_90176125_90176294_90176465_90176540_90176786_90177361_90177429_90177519_90177579_90177753_90177899_90178135_90178312_90178440_90178542_90178873_90179090_90179562_90179709_90180021_90180162_90180243_90180371_90181110_90181318_90181595_90181725_90182752_90182952_90183529_90183698_90184186_90184576_90184727_90184851_90185041_90185212_90185294_90185437_90185617_90185855_90186466_90186594_90186684_90186851_90186926_90186992_90187083
transcript_86027.known	chr3	+	7438	11	FSM	ENSMUSG00000042390.10	ENSMUST00000199754.5	7438	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	3.87814388593306	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTGACTTGTGTTTTAG	NA	False	NA	11	True	AATAAA	-23	NA	90200484	90270714	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90200732_90248962_90249302_90255873_90256004_90256661_90256794_90257693_90257826_90258710_90258882_90259120_90259437_90261614_90261818_90262981_90263093_90263437_90263556_90265175
transcript_86029.known	chr3	-	2259	10	FSM	ENSMUSG00000027932.15	ENSMUST00000029541.12	2259	10	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_6	21.4101625806157	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCCCATCTTCGAGAGT	NA	False	NA	-17	True	AATAAA	-14	NA	90297234	90292545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90292841_90293556_90293688_90293786_90293885_90294054_90294254_90294370_90294462_90294561_90294757_90294942_90295068_90295634_90295794_90295996_90296207_90296478
transcript_8603.known	chr10	+	4115	18	FSM	ENSMUSG00000019978.17	ENSMUST00000218903.2	4115	18	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	40.1674694938122	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25235753	25399411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
transcript_86032.known	chr3	-	4038	31	FSM	ENSMUSG00000027933.12	ENSMUST00000071488.8	4038	31	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	39.1651914615801	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTTGACATCTCTGTTC	NA	False	NA	-3	True	AATGAA	-24	NA	90340610	90298694	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90299219_90299299_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
transcript_86034.known	chr3	-	4337	30	FSM	ENSMUSG00000027933.12	ENSMUST00000029542.12	4337	30	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_21	22.3924035870797	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGCCTGAGTTGACAT	NA	False	NA	-11	True	AATGAA	-16	NA	90340836	90298702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
transcript_86046.known	chr3	-	2226	9	FSM	ENSMUSG00000027933.12	ENSMUST00000198562.2	2226	9	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	14.517231140958	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAGGAAACAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	90340929	90315208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
transcript_86050.known	chr3	-	4066	22	FSM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_16	35.8067374802507	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90373173	90357897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90358490_90358612_90358705_90362124_90362224_90362398_90362574_90363007_90363077_90363202_90363327_90363469_90363617_90364215_90364385_90364627_90364784_90365378_90365536_90365628_90365701_90365938_90366044_90366351_90366430_90366629_90366705_90367239_90367361_90368396_90368482_90368671_90368808_90369472_90369565_90369874_90370011_90370441_90370556_90371117_90371318_90372101
transcript_86058.nnic	chr3	-	874	4	NNC	ENSMUSG00000027931.13	novel	4066	22	NA	NA	2337	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	63.2824356884805	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362446	90357897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_90358490_90358612_90358705_90362124_90362224_90362355
transcript_86060.nic	chr3	-	971	3	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10762	0	2372	0	intron_retention	FALSE	canonical	3	97	junction_2	38	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362411	90357897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_90358490_90358612_90358705_90362124
transcript_86063.known	chr3	+	2027	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	18	True	AATAAA	-23	NA	90383453	90395686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
transcript_86070.known	chr3	+	1702	13	FSM	ENSMUSG00000001016.13	ENSMUST00000196769.5	1702	13	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	69.553137160655	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCTTTTGGTTTTATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	90383432	90395270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394405_90394533_90394625_90394765
transcript_86082.known	chr3	+	3164	7	FSM	ENSMUSG00000001016.13	ENSMUST00000198325.5	3164	7	0	0	0	0	multi-exon	FALSE	canonical	3	1316	junction_1	43.5982288121382	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAAAAAGTAAAAG	NA	False	NA	NA	False	NA	NA	NA	90383463	90392769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083
transcript_86084.known	chr3	+	1373	6	FSM	ENSMUSG00000001016.13	ENSMUST00000198738.5	1373	6	0	0	0	0	multi-exon	FALSE	canonical	3	1316	junction_1	40.3464992285576	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACGAAAACAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	90383453	90389658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670
transcript_86086.known	chr3	-	1575	4	FSM	ENSMUSG00000001018.16	ENSMUST00000184877.8	1575	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	310.762860643861	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAATTTATTTTAT	NA	False	NA	-29	True	AATAAA	-20	NA	90398331	90395679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398143
transcript_86089.known	chr3	-	1505	3	FSM	ENSMUSG00000001018.16	ENSMUST00000185005.2	1505	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	341	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTTATTTTATTAT	NA	False	NA	-26	True	AATAAA	-23	NA	90398300	90395676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90396901_90397460_90397580_90398138
transcript_8609.nnic	chr10	+	4071	18	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-14839	0	intron_retention	TRUE	canonical	3	44	junction_1	79.0900236054462	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25259717	25399411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_25259800_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
transcript_86090.known	chr3	+	3167	1	FSM	ENSMUSG00000001016.13	ENSMUST00000197644.2	3167	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATATATATAT	NA	False	NA	NA	False	NA	NA	NA	90383446	90386613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90383400_90386600
transcript_8610.nnic	chr10	+	4153	18	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-67	0	intron_retention	FALSE	canonical	1	10	junction_1	86.2523456378299	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25308429	25399411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_25308594_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
transcript_86101.nic	chr3	-	2046	6	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	677	junction_3	303.893007487833	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90416842	90406271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_90407415_90409422_90409561_90410402_90410587_90413414_90413569_90414851_90414934_90416497
transcript_86104.known	chr3	-	2012	6	FSM	ENSMUSG00000001017.16	ENSMUST00000049937.13	2012	6	0	0	0	0	multi-exon	FALSE	canonical	3	892	junction_3	230.9202459725	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90416805	90406271	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90413569_90414851_90414934_90416497
transcript_86106.nic	chr3	-	1319	6	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	-37	3	combination_of_known_junctions	FALSE	canonical	3	677	junction_3	303.893007487833	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGAGTTTGTTTTGT	NA	False	NA	-25	True	TTTAAA	-1	NA	90416842	90406998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_90407415_90409422_90409561_90410402_90410587_90413414_90413569_90414851_90414934_90416497
transcript_86112.known	chr3	-	1842	5	FSM	ENSMUSG00000001017.16	ENSMUST00000076639.11	1842	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	581.611769138143	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGCTTTCTGTTTAT	NA	False	NA	-3	True	NA	NA	NA	90416769	90406264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90407415_90410402_90410587_90413414_90413569_90414851_90414934_90416497
transcript_86113.known	chr3	-	1321	5	FSM	ENSMUSG00000001017.16	ENSMUST00000107346.8	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	566.644233624591	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTACATCTTTCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	90416781	90406800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90407415_90410402_90410590_90413414_90413569_90414851_90414934_90416497
transcript_86115.known	chr3	-	3257	5	FSM	ENSMUSG00000001017.16	ENSMUST00000001043.14	3257	5	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_3	258.017804618208	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416758	90406262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90414934_90416497
transcript_86124.known	chr3	-	2411	4	FSM	ENSMUSG00000001017.16	ENSMUST00000107342.2	2411	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	627.621435792841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGTTGAGTTTGTTT	NA	False	NA	-28	True	NA	NA	NA	90416792	90407001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90407415_90410402_90410587_90413414_90414934_90416497
transcript_86125.known	chr3	-	3118	4	FSM	ENSMUSG00000001017.16	ENSMUST00000107343.8	3118	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	621.962664117032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416757	90406262	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90407415_90410402_90410590_90413414_90414934_90416497
transcript_86128.known	chr3	-	677	3	FSM	ENSMUSG00000044080.10	ENSMUST00000060738.9	677	3	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_1	21.5	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAATGTCTGTACCCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	90421699	90418340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_90418672_90419302_90419457_90421507
transcript_86129.known	chr3	+	715	4	FSM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	161.897772958398	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90421741	90431888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90421773_90422064_90422327_90423156_90423350_90431659
transcript_8613.nic	chr10	+	4287	18	NIC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-13	0	intron_retention	FALSE	canonical	3	30	junction_1	82.0204633087627	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25308483	25399411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_25308782_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
transcript_86132.known	chr3	+	1059	4	FSM	ENSMUSG00000042306.12	ENSMUST00000167598.6	1059	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTCTTGACTCTTTA	371	False	NA	15	True	AATAAA	-20	NA	90434176	90436144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90434207_90434478_90434601_90435020_90435168_90435384
transcript_86134.known	chr3	+	1127	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098911.10	1127	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTTGGCTGCTTCCTT	NA	False	NA	8	True	AATAAA	-19	NA	90444560	90450455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90444725_90449300_90449480_90449671
transcript_86135.known	chr3	+	1123	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098910.3	1123	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	10.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTGCTTCCTTTGT	NA	False	NA	11	True	AATAAA	-22	NA	90448467	90450458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90448625_90449300_90449480_90449671
transcript_86136.known	chr3	+	731	3	FSM	ENSMUSG00000001025.9	ENSMUST00000001051.9	731	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCATGTGTTCTGGCTTCC	5197	False	NA	22	True	AATAAA	-22	NA	90520188	90521721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90520534_90521049_90521212_90521497
transcript_86137.known	chr3	+	464	3	FSM	ENSMUSG00000001025.9	ENSMUST00000198128.2	464	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	15	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCATGTGTTCTGGCTTCC	5620	False	NA	22	True	AATAAA	-22	NA	90520611	90521721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_90520690_90521049_90521212_90521497
transcript_86138.known	chr3	-	1392	1	FSM	ENSMUSG00000042165.9	ENSMUST00000192538.2	1392	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTGTTCCAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	92336730	92335338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_92335300_92336700
transcript_86139.known	chr3	+	511	3	FSM	ENSMUSG00000027907.5	ENSMUST00000029515.5	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	9.5	388	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAGAGTCAGTAGATT	NA	False	NA	7	True	AATAAA	-25	NA	93427794	93433594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_93427861_93431357_93431507_93433298
transcript_86140.known	chr3	+	685	3	FSM	ENSMUSG00000041959.15	ENSMUST00000045756.14	685	3	0	0	0	0	multi-exon	TRUE	canonical	3	427	junction_2	41.5	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGACGTAGAGTGTTTC	NA	False	NA	20	True	AATAAA	-24	NA	93462386	93471950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_93462519_93468250_93468403_93471549
transcript_86141.known	chr3	+	1781	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217395	94239847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
transcript_86145.known	chr3	+	2136	11	FSM	ENSMUSG00000028150.15	ENSMUST00000029795.10	2136	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.32664991614216	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTCTTCTTCCTAGT	NA	False	NA	NA	False	AATATA	-17	NA	94280100	94305147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94280239_94282341_94282372_94294427_94294514_94294766_94294909_94296057_94296565_94296781_94296904_94298380_94298514_94298686_94298795_94298951_94299063_94300337_94300448_94304498
transcript_86146.known	chr3	+	5692	14	FSM	ENSMUSG00000041912.13	ENSMUST00000166032.8	5692	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	17.2732991609977	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGGAGCTTTTCTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	94320579	94341975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097_94333420_94335161_94335323_94335452_94335626_94335966_94336032_94336346_94336499_94336663_94336766_94337357_94337455_94337866_94337959_94338124
transcript_86147.known	chr3	+	2652	13	FSM	ENSMUSG00000041912.13	ENSMUST00000197901.5	2652	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	17.5283500522883	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATACTCAGTCACAACGT	NA	False	NA	NA	False	AATAAA	-23	NA	94320624	94338814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097_94333420_94335161_94335323_94335452_94335626_94335966_94336032_94336346_94336499_94336663_94336766_94337357_94337455_94337866
transcript_86150.known	chr3	+	1612	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_4	26.1002341411379	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAAGAACTTC	8490	False	NA	NA	False	NA	NA	NA	94350631	94356015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
transcript_86151.known	chr3	+	1050	6	FSM	ENSMUSG00000041912.13	ENSMUST00000196386.5	1050	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	15.7175061635108	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGAAATATGTTGACAAA	NA	False	NA	NA	False	AATAAA	-30	NA	94320624	94333615	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331898_94332869_94333010_94333097
transcript_86153.known	chr3	+	1231	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	0	0	0	0	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATGTGTATGTATGT	NA	False	NA	NA	False	ATTAAA	-26	NA	94320623	94333695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
transcript_86158.nnic	chr3	+	1589	6	NIC	ENSMUSG00000028140.14	novel	1612	7	NA	NA	-41	13	combination_of_known_splicesites	FALSE	canonical	3	10	junction_5	87.5337649138891	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTCTGTGTTATTTCTT	8442	False	NA	NA	False	NA	NA	NA	94350583	94356028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94355092
transcript_86160.known	chr3	+	716	5	FSM	ENSMUSG00000028140.14	ENSMUST00000199009.2	716	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_4	29.7195222034272	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGGAGTTATTCTTGGT	8483	False	NA	NA	False	TATAAA	-18	NA	94350624	94354148	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942
transcript_86164.known	chr3	-	3531	12	FSM	ENSMUSG00000028136.16	ENSMUST00000107283.8	3531	12	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	30.5951975921464	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAGTACAAAATATAGTA	NA	False	NA	NA	False	NA	NA	NA	94489856	94406619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94408579_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
transcript_86165.known	chr3	-	6261	12	FSM	ENSMUSG00000028136.16	ENSMUST00000029783.16	6261	12	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	37.6139590757922	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTTTCCTAGACTA	NA	False	NA	-2	True	AATAAA	-21	NA	94490023	94404850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94409373_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
transcript_86167.known	chr3	-	2510	12	FSM	ENSMUSG00000028136.16	ENSMUST00000199462.5	2510	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	66.0204075636923	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAAAAAGTCACTATGT	NA	False	NA	NA	False	AAGAAA	-5	NA	94489986	94408433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94409373_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489682
transcript_86170.nic	chr3	-	2718	11	NIC	ENSMUSG00000028136.16	novel	6261	12	NA	NA	37	10	intron_retention	FALSE	canonical	3	179	junction_10	12.2245654319489	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTATGTCCCAAAGTCC	NA	False	NA	NA	False	AAAAAG	-10	NA	94489949	94408423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
transcript_86178.known	chr3	-	2631	13	FSM	ENSMUSG00000005968.15	ENSMUST00000006123.11	2631	13	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_11	22.9474036294596	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCCGTGGGTCTTTTA	6441	False	NA	-5	True	AATAAA	-16	NA	94566178	94520063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94546701_94546777_94566031
transcript_86179.nnic	chr3	-	2608	13	Fusion	ENSMUSG00000005968.15_ENSMUSG00000081355.2	novel	2555	12	NA	NA	-44	0	multi-exon	FALSE	non_canonical	2	2	junction_11	35.2950854306312	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	94665467	94520065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94629191_94629282_94630124_94630212_94640266_94640369_94640735_94640811_94665341
transcript_86183.known	chr3	-	2555	12	FSM	ENSMUSG00000005968.15	ENSMUST00000196733.5	2555	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_9	16.8728840118112	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	6440	False	NA	-7	True	AATAAA	-14	NA	94566179	94520065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
transcript_86184.nnic	chr3	-	2561	12	Fusion	ENSMUSG00000005968.15_ENSMUSG00000081355.2	novel	2555	12	NA	NA	-72	0	multi-exon	FALSE	non_canonical	3	14	junction_10	28.4119634911332	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	94665495	94520065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94629191_94629282_94630124_94630212_94640266_94640369_94665341
transcript_86192.known	chr3	-	4963	21	FSM	ENSMUSG00000068876.17	ENSMUST00000107272.7	4963	21	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_12	7.64509646767129	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTCTTCATTTTTCTG	NA	False	NA	NA	False	ATTAAA	-28	NA	94693774	94667375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94668809_94669080_94669245_94669865_94669975_94670288_94670408_94670494_94670579_94671768_94671859_94672805_94672968_94674426_94674598_94676469_94676728_94677271_94677479_94677802_94678013_94680437_94680571_94680806_94680956_94681512_94681726_94682209_94682343_94683418_94683547_94685303_94685376_94685510_94685581_94685688_94685790_94686460_94687330_94693686
transcript_86193.known	chr3	-	5039	21	FSM	ENSMUSG00000068876.17	ENSMUST00000238849.2	5039	21	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_17	8.61553828846463	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTCTTCATTTTTCTG	NA	False	NA	NA	False	ATTAAA	-28	NA	94693826	94667375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94668809_94669080_94669245_94669865_94669975_94670288_94670408_94670494_94670579_94671768_94671859_94672805_94672968_94674426_94674598_94676469_94676728_94677271_94677479_94677802_94678013_94680437_94680571_94680806_94680956_94681512_94681726_94682209_94682343_94683418_94683547_94685303_94685400_94685510_94685581_94685688_94685790_94686460_94687330_94693686
transcript_86198.known	chr3	+	6399	19	FSM	ENSMUSG00000038902.15	ENSMUST00000107270.9	6399	19	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	12.0021860148809	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTGTTAAGTATATC	NA	False	NA	16	True	AATAAA	-18	NA	94744877	94789637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94745052_94761260_94761386_94763353_94763513_94768106_94768283_94769732_94769842_94771398_94771690_94771768_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
transcript_86199.known	chr3	+	4775	19	FSM	ENSMUSG00000038902.15	ENSMUST00000042402.12	4775	19	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	17.676796536773	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGAATCCCACTGAAC	NA	False	NA	68	True	TATAAA	-11	NA	94745023	94788186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94745052_94761260_94761386_94763353_94763513_94768106_94768283_94769732_94769842_94771398_94771690_94771795_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
transcript_86202.known	chr3	+	4100	18	FSM	ENSMUSG00000038902.15	ENSMUST00000107266.8	4100	18	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	17.1879494279083	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGGCTATGGAAGCT	NA	False	NA	NA	False	NA	NA	NA	94745023	94787643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94745052_94761260_94761386_94768106_94768283_94769732_94769842_94771398_94771690_94771768_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
transcript_86204.known	chr3	-	1183	7	FSM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	0	0	0	0	multi-exon	FALSE	canonical	3	1538	junction_1	134.402380931292	949	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTTGTCTTTCTCAATT	NA	False	NA	NA	False	NA	NA	NA	94794272	94791403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
transcript_86210.known	chr3	+	1712	12	FSM	ENSMUSG00000068874.14	ENSMUST00000090839.12	1712	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	7.58314791042644	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATCACTCTGTGACG	2654	False	NA	NA	False	AATAAA	-14	NA	94840366	94852069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94840474_94844007_94844065_94844205_94844319_94844518_94844705_94845265_94845387_94846956_94847140_94847358_94847538_94849774_94849854_94849935_94850058_94851149_94851243_94851385_94851505_94851716
transcript_86212.known	chr3	+	4014	10	FSM	ENSMUSG00000005774.13	ENSMUST00000144132.8	4014	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	12.4810968178994	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCCTTATGTTTCTTT	NA	False	NA	4	True	NA	NA	NA	94861445	94868660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94861493_94862325_94862448_94862662_94862697_94863056_94863140_94863582_94863703_94863797_94863918_94864031_94864114_94864407_94864610_94865092_94865197_94865560
transcript_86214.known	chr3	+	4333	10	FSM	ENSMUSG00000005774.13	ENSMUST00000137088.8	4333	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	4.21637021355784	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGCTCCTGAGTCGTTT	NA	False	NA	NA	False	NA	NA	NA	94861418	94868872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94861563_94862325_94862458_94862662_94862697_94863056_94863140_94863582_94863703_94863797_94863918_94864031_94864114_94864407_94864610_94865092_94865197_94865560
transcript_86217.known	chr3	+	2895	12	FSM	ENSMUSG00000038861.15	ENSMUST00000107251.9	2895	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	12.4389417848655	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCCACCTCTTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	94882186	94913457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94882397_94891293_94892231_94896613_94896659_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944_94912066_94913069
transcript_86219.known	chr3	+	3692	11	FSM	ENSMUSG00000038861.15	ENSMUST00000072287.12	3692	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	4.61410879802373	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCAGTTTTAATGGTCT	NA	False	NA	NA	False	ATTAAA	-3	NA	94882041	94914154	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_94882397_94891293_94892231_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944_94912066_94913069
transcript_86226.nic	chr3	-	4885	10	NIC	ENSMUSG00000019338.14	novel	4632	9	NA	NA	-19	26	combination_of_known_junctions	FALSE	canonical	3	16	junction_9	41.4428060444694	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTCCCTGGATGTGAG	NA	False	NA	NA	False	NA	NA	NA	94922568	94913874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922421
transcript_86227.nic	chr3	-	4908	10	NIC	ENSMUSG00000019338.14	novel	4632	9	NA	NA	-41	26	combination_of_known_junctions	FALSE	canonical	3	35	junction_9	37.0118432830611	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTCCCTGGATGTGAG	NA	False	NA	NA	False	NA	NA	NA	94922800	94913874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922630
transcript_86231.nic	chr3	-	4617	10	NIC	ENSMUSG00000019338.14	novel	4632	9	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_9	41.4428060444694	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94922568	94914142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922421
transcript_86232.nic	chr3	-	4640	10	NIC	ENSMUSG00000019338.14	novel	4617	8	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_9	37.0118432830611	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94922800	94914142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922630
transcript_86233.known	chr3	-	4632	9	FSM	ENSMUSG00000019338.14	ENSMUST00000019482.8	4632	9	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_8	42.3657807080195	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTGTGTTTGGTGCCT	NA	False	NA	-2	True	AAAAAG	-13	NA	94922549	94914012	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922421
transcript_86234.nic	chr3	-	4834	9	NIC	ENSMUSG00000019338.14	novel	4632	9	NA	NA	-63	26	combination_of_known_junctions	FALSE	canonical	3	70	junction_8	23.3422230089595	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTCCCTGGATGTGAG	NA	False	NA	NA	False	NA	NA	NA	94922822	94913874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922630
transcript_86239.nic	chr3	-	4566	9	NIC	ENSMUSG00000019338.14	novel	4617	8	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_8	23.3422230089595	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94922822	94914142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922630
transcript_86240.known	chr3	-	4617	8	FSM	ENSMUSG00000019338.14	ENSMUST00000147022.8	4617	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	24.2924360445714	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGGCTTTTCTTTTTAT	NA	False	NA	-1	True	ATTAAA	-22	NA	94922715	94914142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922630
transcript_86250.known	chr3	-	1276	10	FSM	ENSMUSG00000005625.16	ENSMUST00000071664.12	1276	10	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	370.873576676127	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTCAAATAGTGATAGCT	NA	False	NA	-13	True	AATAAA	-22	NA	94949863	94940007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
transcript_86252.known	chr3	-	1332	10	FSM	ENSMUSG00000005625.16	ENSMUST00000107237.8	1332	10	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_3	333.422654699207	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATAGTGATAGCTTTG	NA	False	NA	-10	True	AATAAA	-25	NA	94949925	94940004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
transcript_86261.known	chr3	-	1756	9	FSM	ENSMUSG00000005625.16	ENSMUST00000117355.2	1756	9	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_2	388.88942435479	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTTTTGCTTCAAATAG	NA	False	NA	-21	True	AATAAA	-14	NA	94949854	94940015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
transcript_86293.known	chr3	-	3480	15	FSM	ENSMUSG00000028126.17	ENSMUST00000005768.8	3480	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	13.4545720929386	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGTTCTAGCAATCATT	1349	False	NA	-27	True	AATAAA	-18	NA	95014090	94965879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990134_95013686
transcript_86294.known	chr3	-	3663	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107233.9	3663	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_14	7.6080650011172	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTAAATGCTTTTATT	1198	False	NA	-1	True	AATAAA	-44	NA	95014241	94965853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990140_95013686
transcript_86304.known	chr3	-	724	2	FSM	ENSMUSG00000028126.17	ENSMUST00000107229.2	724	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTTGTAGAGGAGTTG	1305	False	NA	NA	False	AATAAA	-33	NA	95014134	95004353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95004630_95013686
transcript_86305.nnic	chr3	-	849	2	NNC	ENSMUSG00000028126.17	novel	724	2	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTTGTAGAGGAGTTG	1241	False	NA	NA	False	AATAAA	-33	NA	95014198	95004353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_95004691_95013686
transcript_86307.known	chr3	+	1456	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAATAA	2560	False	NA	NA	False	NA	NA	NA	95018332	95030362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
transcript_86310.known	chr3	+	956	6	FSM	ENSMUSG00000008958.15	ENSMUST00000125548.8	956	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	357.37017223042	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTACCTGGCTCTGG	2611	False	NA	NA	False	NA	NA	NA	95018383	95030032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95018407_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
transcript_86312.nic	chr3	+	2334	5	ISM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	-23	117	-23	-117	intron_retention	FALSE	canonical	0	0	junction_1	386.814797416024	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTCTGATGTGTAAGGT	2537	False	NA	46	True	AATAAA	-14	NA	95018309	95030245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572
transcript_86317.known	chr3	+	1242	10	FSM	ENSMUSG00000005628.13	ENSMUST00000005769.13	1242	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.05409255338946	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCTCCTTGCCTGGAT	NA	False	NA	NA	False	AATAAA	-19	NA	95031824	95036520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95031890_95032825_95032989_95033130_95033288_95033721_95033839_95034650_95034741_95034899_95035031_95035114_95035223_95035579_95035724_95035910_95036056_95036398
transcript_86318.known	chr3	+	2394	3	FSM	ENSMUSG00000053769.6	ENSMUST00000066386.6	2394	3	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_2	5.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGCTTTAGTGGTTTTA	8611	False	NA	17	True	ATTAAA	-13	NA	95041398	95046829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95042308_95044935_95045298_95045706
transcript_86320.known	chr3	-	1122	2	FSM	ENSMUSG00000013707.4	ENSMUST00000013851.4	1122	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGGCTCACGGTTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	95049671	95046831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95047908_95049625
transcript_86331.nic	chr3	+	4031	20	NIC	ENSMUSG00000038777.20	novel	4029	21	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	26.8983929948681	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCAAGTCTTGTCCT	NA	False	NA	19	True	AATAAA	-28	NA	95067723	95081335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95068024_95069925_95069975_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
transcript_86340.nic	chr3	+	3566	19	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	-44	2	combination_of_known_junctions	TRUE	canonical	3	19	junction_2	24.8891989067994	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTGCCTGACTTTCCTC	NA	False	NA	11	True	AATACA	-14	NA	95067723	95080966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95068024_95069925_95069975_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
transcript_86341.nic	chr3	+	3935	19	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	24.8891989067994	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCAAGTCTTGTCCT	NA	False	NA	19	True	AATAAA	-28	NA	95067723	95081335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95068024_95069925_95069975_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
transcript_86353.nic	chr3	+	3960	19	NIC	ENSMUSG00000038777.20	novel	4029	21	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	25.7440512126492	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCAAGTCTTGTCCT	NA	False	NA	19	True	AATAAA	-28	NA	95067735	95081335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95068014_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079101_95079198_95079565
transcript_8636.known	chr10	+	633	1	FSM	ENSMUSG00000112808.2	ENSMUST00000218296.2	633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTCCTAAAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	25983686	25984319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_25983700_25984300
transcript_86363.nic	chr3	+	3495	18	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	-32	2	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	23.0883664290019	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTGCCTGACTTTCCTC	NA	False	NA	11	True	AATACA	-14	NA	95067735	95080966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95068014_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
transcript_86364.nic	chr3	+	3864	18	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	23.0883664290019	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCAAGTCTTGTCCT	NA	False	NA	19	True	AATAAA	-28	NA	95067735	95081335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95068014_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
transcript_86369.nic	chr3	+	3499	18	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	-26	2	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	22.3489160462629	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTGCCTGACTTTCCTC	NA	False	NA	11	True	AATACA	-14	NA	95067741	95080966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95068024_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
transcript_86370.nic	chr3	+	3868	18	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	22.3489160462629	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCAAGTCTTGTCCT	NA	False	NA	19	True	AATAAA	-28	NA	95067741	95081335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95068024_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868_95078914_95079565
transcript_8638.nic	chr10	-	4471	22	NIC	ENSMUSG00000039089.16	novel	4572	22	NA	NA	-94	0	combination_of_known_junctions	TRUE	canonical	3	15	junction_21	6.02037357305871	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTTTTTATATATGTA	NA	False	NA	-11	True	AATAAA	-12	NA	26252061	26150368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_26152162_26155514_26155578_26155835_26156312_26158677_26158758_26168538_26168692_26178550_26178654_26179520_26179636_26189744_26189856_26191389_26191476_26194274_26194352_26203584_26203737_26206072_26206165_26207717_26207854_26212130_26212236_26213665_26213758_26215116_26215202_26216805_26216939_26218405_26218566_26220074_26220150_26220509_26220622_26228156_26228274_26251906
transcript_86386.known	chr3	-	8661	10	FSM	ENSMUSG00000038766.17	ENSMUST00000136139.8	8661	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_7	7.40036702459854	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGTATTGTTGAATTCT	8776	False	NA	-22	True	AATAAA	-18	NA	95125227	95089076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95116150_95116248_95123524_95123580_95124899
transcript_86389.known	chr3	-	8357	9	FSM	ENSMUSG00000038766.17	ENSMUST00000107209.8	8357	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	6.12244844812923	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGTATTGTTGAATTCT	8983	False	NA	-22	True	AATAAA	-18	NA	95125020	95089076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95123524_95123580_95124899
transcript_86394.known	chr3	-	1539	6	FSM	ENSMUSG00000038766.17	ENSMUST00000107204.8	1539	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	8.88594395660922	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGGAAACATGCGCTTA	8938	False	NA	NA	False	AATAAA	-26	NA	95125065	95110323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95111237_95111951_95112120_95113773_95113914_95116150_95116248_95123524_95123580_95124899
transcript_86397.known	chr3	+	2805	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	780	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGGTTTCAGAGTAATC	1874	False	NA	21	True	AATAAA	-11	NA	95136042	95143720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
transcript_8641.nic	chr10	-	2110	19	NIC	ENSMUSG00000039089.16	novel	4572	22	NA	NA	-94	-7357	combination_of_known_junctions	FALSE	canonical	3	15	junction_18	6.35959467611297	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTAAAGACATCAGCCG	NA	False	NA	NA	False	AAAAAG	-5	NA	26252061	26158706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_26158758_26168538_26168692_26178550_26178654_26179520_26179636_26189744_26189856_26191389_26191476_26194274_26194352_26203584_26203737_26206072_26206165_26207717_26207854_26212130_26212236_26213665_26213758_26215116_26215202_26216805_26216939_26218405_26218566_26220074_26220150_26220509_26220622_26228156_26228274_26251906
transcript_86415.known	chr3	-	1923	2	FSM	ENSMUSG00000053192.10	ENSMUST00000065482.6	1923	2	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGGCTTAGTTTTTTC	6380	False	NA	0	True	AATAAA	-16	NA	95135988	95126445	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95127775_95135394
transcript_86418.known	chr3	-	1289	3	FSM	ENSMUSG00000068860.6	ENSMUST00000107197.2	1289	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	7.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGGTCTCATTTTTCT	NA	False	NA	-1	True	AATATA	-21	NA	95148909	95144417	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95144541_95147260_95147423_95147905
transcript_86419.known	chr3	-	1959	2	FSM	ENSMUSG00000068860.6	ENSMUST00000090815.6	1959	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCTTTTTTCCAGTAC	NA	False	NA	NA	False	AATAAA	-16	NA	95148909	95144230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95144541_95147260
transcript_8642.known	chr10	+	3651	15	FSM	ENSMUSG00000039031.17	ENSMUST00000039557.9	3651	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	3.14934395500694	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTCCTATTTACTACTA	NA	False	NA	103	True	AATAAA	-20	NA	26648472	26794644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_26648693_26721927_26722125_26725870_26726107_26730869_26730934_26736552_26736729_26745916_26746083_26748668_26748761_26753152_26753231_26754886_26755047_26756683_26756767_26763776_26763984_26765727_26765869_26788602_26788728_26792388_26792451_26793000
transcript_86423.known	chr3	-	4658	22	FSM	ENSMUSG00000015697.15	ENSMUST00000015841.12	4658	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_21	51.1160255943511	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1644	False	NA	-4	True	ATTAAA	-15	NA	95264511	95230835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264337
transcript_86424.known	chr3	-	4573	22	FSM	ENSMUSG00000015697.15	ENSMUST00000107171.10	4573	22	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	47.7030211966969	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1688	False	NA	-4	True	ATTAAA	-15	NA	95264467	95230835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247374_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
transcript_86430.known	chr3	-	5652	21	FSM	ENSMUSG00000015697.15	ENSMUST00000124638.8	5652	21	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_10	48.5557411641507	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1689	False	NA	-4	True	ATTAAA	-15	NA	95264466	95230835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95246344_95247217_95247374_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
transcript_86439.nic	chr3	+	2903	12	NIC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	-39	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_2	65.9633005905055	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATTTGCGTTCCTACCT	NA	False	NA	10	True	AATAAA	-11	NA	95188616	95203472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95188923_95189993_95190056_95190541_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
transcript_86452.known	chr3	+	2216	11	FSM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_10	31.9782738746168	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGGTTAGTTTTTTTCT	4318	False	NA	45	True	AATAAA	-31	NA	95222394	95230910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
transcript_86458.nic	chr3	+	2298	10	NIC	ENSMUSG00000015714.12	novel	2216	11	NA	NA	-57	0	intron_retention	FALSE	canonical	3	406	junction_9	33.6675834125276	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGGTTAGTTTTTTTCT	4424	False	NA	45	True	AATAAA	-31	NA	95222500	95230910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
transcript_8646.known	chr10	+	6177	32	FSM	ENSMUSG00000019889.11	ENSMUST00000166468.2	6177	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	60.4652272341261	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATGAGAATGTCACAAAA	NA	False	NA	94	True	AATAAA	-18	NA	27950815	28473393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427613_28427753_28436000_28436162_28438102_28438139_28442490_28442676_28444322_28444411_28445892_28445970_28446169_28446188_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
transcript_86480.known	chr3	-	3140	8	FSM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	23.7538396466589	486	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTGTTTCTTTTTAAAA	4350	False	NA	NA	False	ATTAAA	-19	NA	95189387	95160984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
transcript_8649.known	chr10	+	4669	31	FSM	ENSMUSG00000019889.11	ENSMUST00000218359.2	4669	31	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	49.2190229710243	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGGCTTTTACATTGGAG	NA	False	NA	-49	True	NA	NA	NA	27950849	28471955	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427613_28427753_28436000_28436162_28442490_28442676_28444322_28444411_28445892_28445970_28446169_28446188_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
transcript_86493.known	chr3	-	555	2	FSM	ENSMUSG00000093424.4	ENSMUST00000176569.3	555	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGTACATTGTTG	9735	False	NA	NA	False	NA	NA	NA	95222438	95218688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95218919_95222113
transcript_86494.known	chr3	+	2827	10	FSM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	26.9118359384908	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTTCCTACCTTGGAG	NA	False	NA	15	True	AATAAA	-16	NA	95190254	95203477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
transcript_86495.known	chr3	+	2800	10	FSM	ENSMUSG00000038712.17	ENSMUST00000039537.14	2800	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	52.7870167352017	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTTCCTACCTTGGAG	NA	False	NA	15	True	AATAAA	-16	NA	95190254	95203477	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202610_95202737_95202961
transcript_86497.nnic	chr3	+	1062	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-506	2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGTGTCTTCCTCTAT	NA	False	NA	10	True	AGTAAA	-24	NA	95334475	95338400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
transcript_86503.known	chr3	+	2559	2	FSM	ENSMUSG00000097532.3	ENSMUST00000181809.2	2559	2	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCAGTGTCTTCCTCT	NA	False	NA	8	True	AGTAAA	-22	NA	95334981	95338398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95335007_95335864
transcript_86515.known	chr3	+	2699	22	FSM	ENSMUSG00000015522.19	ENSMUST00000102749.11	2699	22	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	68.4937059524599	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTTTAGGATCCTCTGA	NA	False	NA	-2	True	ATTAAA	-11	NA	95341698	95402878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
transcript_86520.known	chr3	+	4325	21	FSM	ENSMUSG00000015522.19	ENSMUST00000090804.12	4325	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.9941174435031	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	TATAAA	-1	NA	95341700	95404551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
transcript_86526.known	chr3	+	4035	17	FSM	ENSMUSG00000015522.19	ENSMUST00000149051.8	4035	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	75.7685363046562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAGAAAAAAGAAATAATA	NA	False	NA	NA	False	NA	NA	NA	95341829	95400001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565
transcript_86528.known	chr3	+	783	4	FSM	ENSMUSG00000015522.19	ENSMUST00000107160.8	783	4	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	3.2659863237109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGGTTTTACTTTTAG	NA	False	NA	NA	False	ATTAAA	-21	NA	95341738	95368179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687
transcript_8653.known	chr10	+	1464	3	FSM	ENSMUSG00000019889.11	ENSMUST00000219761.2	1464	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCTGTGTTGATTATTC	NA	False	NA	NA	False	NA	NA	NA	27951005	28140669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_27951174_28082129_28082253_28139496
transcript_86531.known	chr3	+	1444	16	FSM	ENSMUSG00000028109.15	ENSMUST00000107154.4	1444	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	107.711260114974	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466988	95494907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845_95492901_95494691
transcript_86537.known	chr3	+	1385	15	FSM	ENSMUSG00000028109.15	ENSMUST00000029754.13	1385	15	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_6	50.4359059821958	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATATTGTGTTTACCTGA	NA	False	NA	NA	False	AATAAA	-11	NA	95466988	95494903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
transcript_86543.known	chr3	+	2836	5	FSM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	6.87386354243376	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTCTCTGTACAT	NA	False	NA	4	True	AATAAA	-15	NA	95496244	95526553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
transcript_86545.known	chr3	+	495	1	FSM	ENSMUSG00000060438.6	ENSMUST00000074353.6	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTTGGAGTTTATGTTG	106	False	NA	-23	True	NA	NA	NA	95529588	95530083	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95529600_95530100
transcript_86547.known	chr3	+	1130	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	204.491781959298	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	400	False	NA	10	True	AATAAA	-21	NA	95532321	95539413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
transcript_86548.known	chr3	+	3845	3	FSM	ENSMUSG00000038619.13	ENSMUST00000037983.6	3845	3	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	58	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	409	False	NA	10	True	AATAAA	-21	NA	95532330	95539413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95532488_95534059_95534186_95535851
transcript_86549.known	chr3	+	937	2	FSM	ENSMUSG00000038619.13	ENSMUST00000197050.2	937	2	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCCTTTAATCCCAGTAC	415	False	NA	NA	False	ATTAAA	-30	NA	95532336	95534845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95532488_95534059
transcript_86551.known	chr3	+	998	1	FSM	ENSMUSG00000038619.13	ENSMUST00000199421.2	998	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAATATAAAAATAAAAA	382	False	NA	NA	False	NA	NA	NA	95532303	95533301	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95532300_95533300
transcript_86554.known	chr3	+	858	4	FSM	ENSMUSG00000038612.17	ENSMUST00000178686.2	858	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	362.966481464428	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTGAGTGCAATAGGGG	6486	False	NA	NA	False	GGGGCT	-25	NA	95566167	95568134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95566220_95566357_95566799_95567071_95567320_95568017
transcript_86559.known	chr3	+	3418	3	FSM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_2	15.5	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAAGGTGTGGTATGGG	6417	False	NA	14	True	AATAAA	-14	NA	95566098	95570487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95566799_95567071_95567320_95568017
transcript_8656.nic	chr10	+	930	2	ISM	ENSMUSG00000019889.11	ENSMUST00000219761.2	1464	3	-575	58353	-385	-58353	5prime_fragment	FALSE	canonical	3	171	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGATTTTTTCACTTTACA	NA	False	NA	NA	False	NA	NA	NA	27950430	28082316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_27951174_28082129
transcript_86568.known	chr3	-	3856	18	FSM	ENSMUSG00000015850.12	ENSMUST00000015994.4	3856	18	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_17	6.21918006589627	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGCTCTTCGTTATGT	NA	False	NA	NA	False	ATTAAA	-15	NA	95595169	95583513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961_95589167_95589519_95589657_95590617_95590721_95590942_95591550_95591670_95592009_95592268_95592327_95592765_95592864_95595131
transcript_8657.known	chr10	+	2364	1	FSM	ENSMUSG00000019889.11	ENSMUST00000219107.2	2364	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCATTG	NA	False	NA	NA	False	ATTAAA	-19	NA	27950900	27953264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_27950900_27953300
transcript_86571.known	chr3	-	1895	11	FSM	ENSMUSG00000028108.17	ENSMUST00000029753.14	1895	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.90688837074973	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCGTTGTCTTTAGTGC	6907	False	NA	NA	False	AATAAA	-18	NA	95646879	95641459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95641784_95642134_95642223_95642510_95642732_95643158_95643534_95643783_95644104_95644324_95644367_95644944_95645026_95645119_95645201_95645323_95645429_95645550_95645614_95646684
transcript_8658.known	chr10	+	1845	6	FSM	ENSMUSG00000019883.12	ENSMUST00000160399.8	1845	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.6643536596088	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTTATGTCCATTCCAG	NA	False	NA	2	True	AATAGA	-13	NA	29189161	29221556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_29189294_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
transcript_86582.nic	chr3	-	2447	18	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	1	47	junction_13	145.096698456975	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662201	95647287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658149_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
transcript_86585.known	chr3	-	2400	18	FSM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	0	0	0	0	multi-exon	FALSE	canonical	1	178	junction_5	104.738626737206	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
transcript_866.nnic	chr1	+	2718	10	NNC	ENSMUSG00000037509.22	novel	3287	10	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	8.22522467703189	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGCTGGTCAGCTGG	NA	False	NA	10	True	CATAAA	-19	NA	34840761	34851820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_34841083_34843994_34844175_34845036_34845217_34845395_34845576_34846139_34846373_34846722_34846853_34848777_34848910_34849391_34849614_34850166_34850245_34850758
transcript_8660.known	chr10	+	3856	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	6.04648658313239	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTTCCGTGTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	29189495	29223465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
transcript_86605.nic	chr3	-	2522	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-9	0	intron_retention	FALSE	canonical	1	178	junction_5	104.120554376886	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662204	95647287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
transcript_86615.known	chr3	-	2313	17	FSM	ENSMUSG00000028107.15	ENSMUST00000074339.13	2313	17	0	0	0	0	multi-exon	TRUE	canonical	1	55	junction_5	130.985194177625	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662174	95647287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
transcript_8663.known	chr10	-	945	4	FSM	ENSMUSG00000038876.13	ENSMUST00000161508.3	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	93.3821301011185	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATCAGTTGATGGTCAG	NA	False	NA	NA	False	NA	NA	NA	29238022	29223214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237959
transcript_86630.known	chr3	-	2157	16	FSM	ENSMUSG00000028107.15	ENSMUST00000163530.8	2157	16	0	0	0	0	multi-exon	FALSE	canonical	1	51	junction_13	151.691997884602	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
transcript_8664.known	chr10	-	781	4	FSM	ENSMUSG00000038876.13	ENSMUST00000214896.2	781	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	95.3601360923712	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATATAATAGATATACCA	NA	False	NA	NA	False	AATATA	-37	NA	29238043	29223379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237979
transcript_8666.nic	chr10	-	2670	3	ISM	ENSMUSG00000038876.13	ENSMUST00000161508.3	945	4	-64	-1043	-43	0	intron_retention	FALSE	canonical	3	41	junction_2	92.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238086	29222171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_29223880_29230287_29230444_29237280
transcript_8667.known	chr10	-	1948	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	66.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_29223880_29230287_29230444_29237959
transcript_8668.known	chr10	-	4323	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	74.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGTTTCAACTTTTC	NA	False	NA	2	True	AATAAA	-20	NA	29238438	29220171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_29223880_29230287_29230444_29237979
transcript_86685.known	chr3	-	3298	9	FSM	ENSMUSG00000028106.14	ENSMUST00000197449.2	3298	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	23.6851087183488	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAAGTGTCATGAATTG	10010	False	NA	-4	True	ATTAAA	-15	NA	95726090	95679566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95693631_95693710_95694595_95694697_95697411_95697542_95725858
transcript_86687.nic	chr3	-	3350	8	ISM	ENSMUSG00000028106.14	ENSMUST00000200164.5	7498	10	-276	11914	-45	0	5prime_fragment	FALSE	canonical	3	55	junction_5	20.2957721544892	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAAGTGTCATGAATTG	9967	False	NA	-4	True	ATTAAA	-15	NA	95726220	95679566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95694595_95694697_95697411_95697542_95725858
transcript_86696.known	chr3	-	2933	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGAGGCAGGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	95763197	95737435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
transcript_867.known	chr1	+	3287	10	FSM	ENSMUSG00000037509.22	ENSMUST00000047664.16	3287	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	6.35959467611297	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCTGAGCCCATCTACT	NA	False	NA	NA	False	AATAAA	-18	NA	34840784	34852390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_34841083_34843994_34844175_34845036_34845217_34845395_34845576_34846139_34846373_34846722_34846853_34848777_34848910_34849391_34849636_34850166_34850245_34850758
transcript_86720.known	chr3	-	2732	16	FSM	ENSMUSG00000015748.14	ENSMUST00000161476.8	2732	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_15	112.760197863529	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95763065	95737933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95762631
transcript_86722.known	chr3	-	488	3	FSM	ENSMUSG00000054312.7	ENSMUST00000067298.5	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_2	92.5	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGCTGTCTTATTGGTC	NA	False	NA	NA	False	AATAAA	-37	NA	95778831	95769945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95770245_95777805_95777928_95778764
transcript_86724.known	chr3	-	405	2	FSM	ENSMUSG00000054312.7	ENSMUST00000072587.5	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAGGCTTGGACATA	NA	False	NA	NA	False	AATAAA	-17	NA	95777931	95769965	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95770245_95777805
transcript_86726.nnic	chr3	-	1540	7	NNC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	74.0954714465661	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789585	95785814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789266_95789365_95789466
transcript_86727.nic	chr3	-	1099	6	NIC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	70.7615714918769	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789552	95785814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788592_95789466
transcript_86728.known	chr3	-	1398	6	FSM	ENSMUSG00000038550.11	ENSMUST00000036418.10	1398	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_5	32.3604697122894	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAATGCTTTTTTTTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	95789543	95785816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789466
transcript_86729.known	chr3	-	752	6	FSM	ENSMUSG00000038543.14	ENSMUST00000036360.13	752	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	8.93532316147547	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTTGCCTACTTCTTA	NA	False	NA	NA	False	NA	NA	NA	95799267	95791269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95791550_95792281_95792381_95795452_95795609_95796168_95796228_95797034_95797122_95799196
transcript_86730.known	chr3	-	809	6	FSM	ENSMUSG00000038543.14	ENSMUST00000090476.10	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	2.22710574513201	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCCTACTTCTTAATGA	NA	False	NA	NA	False	NA	NA	NA	95799317	95791265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95791550_95792281_95792384_95795452_95795609_95796168_95796228_95797034_95797122_95799196
transcript_86732.known	chr3	-	710	5	FSM	ENSMUSG00000038550.11	ENSMUST00000161866.8	710	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	75.7396857664461	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGAGGAGCCTCGT	NA	False	NA	NA	False	AAGAAA	-2	NA	95789563	95786115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95789466
transcript_86733.known	chr3	-	1939	5	FSM	ENSMUSG00000038550.11	ENSMUST00000159739.8	1939	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_2	14.8723737177358	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789517	95785814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492
transcript_86734.known	chr3	+	1601	7	FSM	ENSMUSG00000015750.16	ENSMUST00000056710.10	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_6	85.2670641116617	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAAGGACTTTATAAT	NA	False	NA	-20	True	NA	NA	NA	95801366	95804757	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548_95803673_95804005
transcript_86735.known	chr3	+	2863	6	FSM	ENSMUSG00000015750.16	ENSMUST00000015894.12	2863	6	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_4	15.0651916682132	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	AATACA	-4	NA	95801280	95805600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
transcript_8674.known	chr10	-	635	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1418	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAATCAATAGAC	NA	False	NA	-8	True	AATAAA	-21	NA	29575376	29574741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_29574700_29575400
transcript_86741.known	chr3	-	984	2	FSM	ENSMUSG00000038526.15	ENSMUST00000149202.2	984	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTATCTATTTCCTCTT	7367	False	NA	NA	False	NA	NA	NA	95811996	95808824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95809444_95811631
transcript_86743.known	chr3	+	1381	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGGTGTAGTTTGGTGC	NA	False	NA	12	True	ATTAAA	-15	NA	95836589	95852877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
transcript_86745.known	chr3	+	3274	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	0	0	0	0	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTCAGTGTGTGATTG	NA	False	NA	105	True	AATAAA	-22	NA	95836557	95854702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
transcript_8675.known	chr10	-	1532	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	0	0	0	0	multi-exon	FALSE	canonical	3	2101	junction_1	71	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGAGTGATTGTACTACA	NA	False	NA	NA	False	NA	NA	NA	30076556	30072004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_30073223_30074461_30074576_30076356
transcript_86755.known	chr3	+	878	5	FSM	ENSMUSG00000015749.13	ENSMUST00000171368.8	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	694.522497835743	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATTCTCATTCATCTTC	NA	False	NA	NA	False	NA	NA	NA	95836636	95852754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_95836963_95844431_95844508_95845193_95845352_95851618_95851674_95852491
transcript_86763.known	chr3	-	1931	6	FSM	ENSMUSG00000015745.10	ENSMUST00000015889.10	1931	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	1.49666295470958	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGGCTTCTCACCAAGGT	1391	False	NA	NA	False	ATTAAA	-15	NA	95903313	95895740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95896946_95898112_95898215_95898755_95898861_95899449_95899591_95902833_95902981_95903082
transcript_86764.known	chr3	-	2637	15	FSM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_11	13.9571136130707	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTTCAGTGTTTGATGG	NA	False	NA	-5	True	AATAAA	-26	NA	95965778	95907143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95907464_95926920_95927053_95938317_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663_95953775_95954309_95954448_95954558_95954628_95955619_95955700_95960350_95960412_95964291_95964427_95964993
transcript_86766.known	chr3	-	266	2	FSM	ENSMUSG00000015747.6	ENSMUST00000140518.2	266	2	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGGCATCATAATTATC	NA	False	NA	NA	False	AATAAA	-16	NA	95965031	95964198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_95964427_95964993
transcript_86770.known	chr3	+	2778	17	FSM	ENSMUSG00000045934.16	ENSMUST00000054356.16	2778	17	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	1.93245310421754	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGGTATTTTCTTGTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	96069320	96079034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96069576_96069945_96070037_96070408_96070531_96070784_96070846_96070984_96071128_96071564_96071644_96071749_96071886_96072102_96072191_96072313_96072403_96072487_96072613_96075127_96075195_96075388_96075460_96075914_96076082_96076351_96076526_96077122_96077306_96077668_96077963_96078401
transcript_86773.known	chr3	+	4334	13	FSM	ENSMUSG00000038486.10	ENSMUST00000035371.9	4334	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.01900690659762	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTGTGTCTGCTCCTGG	1754	False	NA	4	True	AATAAA	-25	NA	96088466	96102837	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96088620_96091954_96092924_96094288_96094470_96095411_96095564_96095640_96095775_96096377_96096468_96096682_96096794_96096966_96097056_96097598_96097764_96097942_96098077_96099729_96099937_96100504_96100665_96101048
transcript_86774.known	chr3	+	444	1	FSM	ENSMUSG00000063689.5	ENSMUST00000073115.5	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATCCCTTTCCACACA	NA	False	NA	NA	False	AAGAAA	-34	NA	96127180	96127624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96127200_96127600
transcript_86775.known	chr3	-	520	1	FSM	ENSMUSG00000068855.4	ENSMUST00000090782.4	520	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACTTTGGTGGCTCTTA	NA	False	NA	54	True	NA	NA	NA	96128196	96127676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96127700_96128200
transcript_86776.known	chr3	-	1020	1	FSM	ENSMUSG00000081058.6	ENSMUST00000167403.4	1020	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTATTGTTGCTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	96146443	96145423	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96145400_96146400
transcript_86777.known	chr3	+	2427	1	FSM	ENSMUSG00000093577.2	ENSMUST00000176760.2	2427	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTGACTCTTCTATTTC	NA	False	NA	NA	False	TATAAA	-10	NA	96146708	96149135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96146700_96149100
transcript_86778.known	chr3	+	586	1	FSM	ENSMUSG00000064220.7	ENSMUST00000078756.7	586	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGTCTTGGTGGCCTTTC	NA	False	NA	NA	False	GATAAA	-17	NA	96152812	96153398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96152800_96153400
transcript_86779.known	chr3	+	1602	1	FSM	ENSMUSG00000103940.2	ENSMUST00000193036.2	1602	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAAGC	8638	False	NA	NA	False	NA	NA	NA	96171100	96172702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96171100_96172700
transcript_86780.known	chr3	+	488	1	FSM	ENSMUSG00000074403.3	ENSMUST00000098843.3	488	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGCCACCTACGTTGT	1980	False	NA	NA	False	NA	NA	NA	96175969	96176457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96176000_96176500
transcript_86781.known	chr3	-	166	1	FSM	ENSMUSG00000118677.1	ENSMUST00000240510.1	166	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACTGGTAACCAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	96367505	96367339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96367300_96367500
transcript_86782.known	chr3	+	2028	4	FSM	ENSMUSG00000038403.11	ENSMUST00000049208.11	2028	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGTCCTCTGTTGCCTC	NA	False	NA	NA	False	ATTAAA	-15	NA	96432487	96436526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96432647_96433744_96433919_96434350_96434899_96435379
transcript_86785.known	chr3	-	659	3	FSM	ENSMUSG00000074398.6	ENSMUST00000098839.3	659	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTCTTGTTTTTAAACC	NA	False	NA	NA	False	AATAAA	-16	NA	96465131	96463080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96463377_96464601_96464905_96465071
transcript_86787.known	chr3	+	2827	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATACTGGAGAAGTTAC	NA	False	NA	45	True	AATAAA	-40	NA	96465272	96469199	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
transcript_86788.known	chr3	+	2795	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAATGTTCTTTTCT	NA	False	NA	19	True	AATAAA	-14	NA	96465275	96469173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
transcript_86790.known	chr3	-	1427	8	FSM	ENSMUSG00000028104.15	ENSMUST00000091924.10	1427	8	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_6	13.8534604827436	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96501497	96485187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
transcript_86791.known	chr3	-	607	7	FSM	ENSMUSG00000028104.15	ENSMUST00000145001.2	607	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	26.9794160220137	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTGGGCATAGACTGA	NA	False	NA	NA	False	NA	NA	NA	96501475	96485817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
transcript_86798.known	chr3	+	2583	2	FSM	ENSMUSG00000049097.10	ENSMUST00000058943.8	2583	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGTCACTGCTGCCT	NA	False	NA	NA	False	AATAAA	-14	NA	96503951	96507091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96504125_96504681
transcript_86799.known	chr3	+	3312	6	FSM	ENSMUSG00000049288.5	ENSMUST00000062058.5	3312	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.71293199325011	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAATGACTTTTTTCCC	NA	False	NA	19	True	ATTAAA	-21	NA	96508464	96533487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96508790_96521707_96521872_96525916_96526058_96528624_96528721_96529458_96529537_96530979
transcript_86805.known	chr3	+	2604	6	FSM	ENSMUSG00000038374.11	ENSMUST00000196456.5	2604	6	0	0	0	0	multi-exon	FALSE	canonical	3	2213	junction_2	872.428931202995	1009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTACTATTCCTAATGT	8642	False	NA	NA	False	NA	NA	NA	96537255	96541107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96537345_96537617_96537678_96537792_96537871_96538181_96538319_96538747_96538885_96539004
transcript_86806.known	chr3	+	2608	6	FSM	ENSMUSG00000038374.11	ENSMUST00000048915.11	2608	6	0	0	0	0	multi-exon	FALSE	canonical	3	2531	junction_2	745.762804114016	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTACTATTCCTAATGT	8635	False	NA	NA	False	NA	NA	NA	96537248	96541107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004
transcript_86816.known	chr3	+	1122	5	FSM	ENSMUSG00000028102.16	ENSMUST00000048766.15	1122	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	117.48829728956	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96542987	96552042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890_96551332_96551751
transcript_86817.known	chr3	+	1017	4	FSM	ENSMUSG00000028102.16	ENSMUST00000156015.2	1017	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	117.382565428886	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGGTCACTGTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	96542815	96551349	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96543056_96543989_96544106_96544446_96544649_96550890
transcript_8682.known	chr10	-	2359	13	FSM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_10	17.7080882335979	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCTATTTGATTTGTGG	NA	False	NA	NA	False	AGTAAA	-21	NA	30476745	30410220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
transcript_86820.nic	chr3	+	2132	3	NIC	ENSMUSG00000028102.16	novel	1122	5	NA	NA	-7	0	intron_retention	FALSE	canonical	3	279	junction_2	10.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96542738	96552042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_96543060_96543989_96544649_96550890
transcript_86821.known	chr3	+	3295	14	FSM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	35.3650447551328	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAGCAGAAAACAGA	467	False	NA	-7	True	NA	NA	NA	96577642	96598325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96577766_96585448_96585584_96586495_96586585_96586945_96587011_96587786_96587845_96587942_96588014_96588277_96588385_96589342_96589528_96590309_96590348_96590498_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598154
transcript_86822.known	chr3	+	4052	13	FSM	ENSMUSG00000038354.14	ENSMUST00000048427.9	4052	13	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	35.4200978730061	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTATTGTTGTGGTTTTTG	271	False	NA	16	True	AATAAA	-16	NA	96577446	96598348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96577766_96585448_96585580_96586495_96586585_96586945_96587011_96587786_96587845_96587942_96588014_96588277_96588385_96589342_96589528_96590309_96590348_96590498_96592491_96596461_96596552_96596760_96596827_96597507
transcript_86827.known	chr3	+	2695	15	FSM	ENSMUSG00000028101.19	ENSMUST00000107077.4	2695	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	45.7727304969111	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGGGAAGGGATGTTGT	3321	False	NA	16	True	AATAAA	-26	NA	96604432	96613289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96604512_96606735_96606970_96607074_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_86830.known	chr3	+	2281	14	FSM	ENSMUSG00000028101.19	ENSMUST00000162934.8	2281	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	47.580141051548	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATCTGGTCTTTGACAT	2646	False	NA	NA	False	NA	NA	NA	96603757	96612790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610945_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_86831.known	chr3	+	2858	14	FSM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	28.3212760050852	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	2588	False	NA	5	True	AATAAA	-15	NA	96603699	96613278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_86834.known	chr3	+	2931	14	FSM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	24.6852374253431	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGTGTTTATTACTG	3287	False	NA	113	True	AAAAAG	-4	NA	96604398	96613386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_86837.nic	chr3	+	3330	13	ISM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	-12	2	-12	-2	intron_retention	FALSE	canonical	3	88	junction_1	28.0132657067247	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGAGCGTCATGGAGGG	2576	False	NA	3	True	AATAAA	-13	NA	96603687	96613276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
transcript_86838.nic	chr3	+	3267	13	NIC	ENSMUSG00000028101.19	novel	2931	14	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	24	junction_10	47.3723430799965	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGAGCGTCATGGAGGG	3272	False	NA	3	True	AATAAA	-13	NA	96604383	96613276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610945_96611054_96611224_96611374_96611509_96611664
transcript_86839.nic	chr3	+	3298	13	ISM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	-15	110	-8	-2	intron_retention	FALSE	canonical	3	105	junction_1	23.8449854966056	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGAGCGTCATGGAGGG	3272	False	NA	3	True	AATAAA	-13	NA	96604383	96613276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
transcript_86848.known	chr3	-	1110	8	FSM	ENSMUSG00000028100.12	ENSMUST00000171249.6	1110	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.53405521487387	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTTTTTTTTTTAAGTG	NA	False	NA	-2	True	AATAAA	-13	NA	96615878	96613384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615099_96615126_96615307_96615492_96615643
transcript_8685.known	chr10	-	1576	11	FSM	ENSMUSG00000019792.9	ENSMUST00000215595.2	1576	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	70.5592658691968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476691	30410710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
transcript_86852.known	chr3	-	1039	8	FSM	ENSMUSG00000028100.12	ENSMUST00000029742.9	1039	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	22.7075461699679	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGGAGAGGCCCTACTC	NA	False	NA	-101	True	NA	NA	NA	96615855	96613483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615125_96615203_96615307_96615492_96615643
transcript_86858.known	chr3	-	2406	15	FSM	ENSMUSG00000028099.9	ENSMUST00000154679.8	2406	15	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_14	52.4860039652944	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	96634757	96618838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634428
transcript_86859.known	chr3	-	2390	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGGTCAGCACGATAAGGA	NA	False	NA	NA	False	CATAAA	-34	NA	96634944	96618805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
transcript_8686.nic	chr10	-	2695	6	ISM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	22	53693	22	2037	5prime_fragment	FALSE	canonical	3	159	junction_3	17.7696370249929	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATCCAATAAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	30476723	30463913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
transcript_86869.nnic	chr3	-	2154	14	NIC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	37	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_13	58.8212617035912	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	96634907	96618838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96634664
transcript_86872.nic	chr3	-	2454	14	NIC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	175	junction_5	22.7614331762454	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	96634944	96618838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631369_96633149_96633316_96634664
transcript_86882.known	chr3	-	808	4	FSM	ENSMUSG00000028099.9	ENSMUST00000141377.8	808	4	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_1	11.8415464455544	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTGTGTGCCAGTCAT	NA	False	NA	-1	True	AATGAA	-22	NA	96634770	96630735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96631016_96631112_96631369_96633149_96633316_96634664
transcript_86884.known	chr3	-	923	3	FSM	ENSMUSG00000028099.9	ENSMUST00000125183.2	923	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	7.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTGGTGTGTGCCAGT	NA	False	NA	-4	True	AATGAA	-19	NA	96634791	96630738	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96631369_96633149_96633316_96634664
transcript_86888.known	chr3	+	2742	10	FSM	ENSMUSG00000028098.14	ENSMUST00000199051.5	2742	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	296.671701996385	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAAATAAAAAAG	4803	False	NA	NA	False	NA	NA	NA	96634987	96698954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96667023_96667079_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
transcript_8689.known	chr10	-	5105	16	FSM	ENSMUSG00000039697.17	ENSMUST00000068567.5	5105	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	2.09337579574768	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTCTTTCCTAAAGACTC	NA	False	NA	0	True	AATAAA	-22	NA	30679103	30521579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_30523648_30523962_30524037_30524440_30524537_30528931_30529085_30530306_30530439_30538289_30538438_30565699_30565869_30566752_30567784_30570064_30570250_30572063_30572190_30574125_30574240_30577914_30578023_30580596_30580677_30598641_30598863_30647715_30647837_30678824
transcript_86891.known	chr3	+	2209	9	FSM	ENSMUSG00000028098.14	ENSMUST00000029740.14	2209	9	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_7	60.034885691571	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGCTTCAGCGTCTCAA	4795	False	NA	14	True	AATAAA	-21	NA	96634979	96698468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
transcript_8690.nic	chr10	-	655	2	ISM	ENSMUSG00000039697.17	ENSMUST00000215725.2	1445	7	-36	75829	-36	-75829	5prime_fragment	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCATTTATTTTCCAAT	NA	False	NA	NA	False	NA	NA	NA	30679358	30647715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_30647837_30678824
transcript_86904.known	chr3	-	4598	14	FSM	ENSMUSG00000028096.14	ENSMUST00000029738.14	4598	14	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_5	18.4284960714547	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTGAGCAATTACACGT	1863	False	NA	NA	False	AATAAA	-14	NA	96812662	96775596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_96778911_96779792_96779859_96780775_96780866_96782943_96783040_96787389_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800813_96800921_96804648_96804753_96805807_96805868_96812497
transcript_8691.known	chr10	-	875	5	FSM	ENSMUSG00000019791.13	ENSMUST00000161074.8	875	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	42.7492689995981	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTGTCTTCAGACACAC	NA	False	NA	NA	False	NA	NA	NA	30494475	30484136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30494198
transcript_86911.known	chr3	+	2406	9	FSM	ENSMUSG00000038298.15	ENSMUST00000058865.14	2406	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	6.6226410894748	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTAAAATCTATCTGTT	7719	False	NA	NA	False	AATAAA	-22	NA	96737391	96778242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_96737473_96757543_96757756_96758806_96759057_96761849_96761987_96763170_96763367_96764510_96764708_96775623_96775849_96776256_96776548_96777425
transcript_86914.nic	chr3	+	2275	9	NIC	ENSMUSG00000038298.15	novel	531	2	NA	NA	-25	0	intron_retention	FALSE	canonical	2	4	junction_1	7.93626958967499	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCCTGTTATAGAAGTG	NA	False	NA	NA	False	ATTAAA	-10	NA	96740516	96777788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_96740921_96757543_96757756_96758806_96759057_96761849_96761987_96763170_96763367_96764510_96764708_96775623_96775849_96776256_96776548_96777425
transcript_86916.nic	chr3	+	2729	9	NIC	ENSMUSG00000038298.15	novel	531	2	NA	NA	-25	0	intron_retention	FALSE	canonical	2	4	junction_1	7.93626958967499	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTAAAATCTATCTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	96740516	96778242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_96740921_96757543_96757756_96758806_96759057_96761849_96761987_96763170_96763367_96764510_96764708_96775623_96775849_96776256_96776548_96777425
transcript_8692.known	chr10	-	509	5	FSM	ENSMUSG00000019791.13	ENSMUST00000019925.7	509	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	90.3562394082445	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGGACAAGTTCCTTAC	NA	False	NA	-32	True	AATAAA	-8	NA	30494333	30484378	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_30484420_30486312_30486458_30487643_30487714_30490708_30490827_30494198
transcript_8693.known	chr10	-	2550	5	FSM	ENSMUSG00000019789.10	ENSMUST00000019924.9	2550	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTGGAGGAGTTGCT	NA	False	NA	NA	False	ATTAAA	-19	NA	30718797	30708354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_30710424_30713470_30713553_30716386_30716471_30716599_30716679_30718561
transcript_86930.known	chr3	+	1754	10	FSM	ENSMUSG00000028093.16	ENSMUST00000090759.5	1754	10	0	0	0	0	multi-exon	FALSE	canonical	3	1030	junction_1	83.6891662236509	1362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTTTGCCTGTGTGT	NA	False	NA	11	True	NA	NA	NA	97066092	97083890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
transcript_86963.known	chr3	-	6102	10	FSM	ENSMUSG00000038256.16	ENSMUST00000046521.14	6102	10	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_9	9.10162107389884	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGCCTTTTTGTGCCT	NA	False	NA	-9	True	AATAAA	-21	NA	97134680	97110977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_97113294_97114462_97114724_97115793_97118033_97120187_97120288_97121000_97121191_97122427_97122745_97123628_97123942_97129094_97129178_97131157_97131294_97134533
transcript_8697.known	chr10	+	858	6	FSM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	15.6025638918737	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	False	NA	20	True	ATTAAA	-27	NA	31189378	31204200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
transcript_86970.nnic	chr3	-	3026	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.3504732250088	207	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTATGTTGCTTTTTT	NA	False	NA	-8	True	AATAGA	-13	NA	97517561	97468057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_86977.nnic	chr3	-	2570	21	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	-42	-802	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	68.2950217805076	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAAGCCTTCCCTCTGTGC	NA	False	NA	NA	False	AAAAAG	-4	NA	97517561	97470773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_8698.nnic	chr10	+	931	6	NNC	ENSMUSG00000000295.14	novel	631	3	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	195.023485765176	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCTGTTAAACACTCCA	NA	False	NA	0	True	ATTAAA	-7	NA	31189500	31204180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_31189695_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
transcript_86984.nnic	chr3	-	2076	16	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	-42	-1369	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	71.5978274034128	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCTAAAAGCATTGGTCA	NA	False	NA	NA	False	AATAAA	-32	NA	97517561	97479719	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_86988.nnic	chr3	+	2240	3	Antisense	novelGene_ENSMUSG00000028089.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	1.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGCTGGGGCTGCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	97453725	97481712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr3_+_97454027_97454151_97454205_97479826
transcript_86990.known	chr3	-	3008	23	FSM	ENSMUSG00000028089.6	ENSMUST00000029730.5	3008	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	88.0793336047933	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTATGTTGCTTTTTT	NA	False	NA	-8	True	AATAGA	-13	NA	97517519	97468057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488294_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_86991.known	chr3	+	5006	8	FSM	ENSMUSG00000038205.13	ENSMUST00000045743.13	5006	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	11.768168758068	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAGTTACTTACTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	97565527	97581128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_97565686_97565904_97566083_97569588_97569756_97570897_97570992_97571183_97571305_97573897_97574032_97574674_97574744_97577043
transcript_870.nic	chr1	+	3090	9	NIC	ENSMUSG00000037509.22	novel	3287	10	NA	NA	-23	0	intron_retention	FALSE	canonical	3	11	junction_5	6.35904867098845	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGCTGGTCAGCTGG	NA	False	NA	10	True	CATAAA	-19	NA	34840761	34851820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_+_34841083_34843994_34844175_34845036_34845217_34845395_34845576_34846139_34846853_34848777_34848910_34849391_34849636_34850166_34850245_34850758
transcript_8700.known	chr10	+	941	3	FSM	ENSMUSG00000000295.14	ENSMUST00000162076.2	941	3	0	0	0	0	multi-exon	FALSE	canonical	3	497	junction_1	13.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTTTCTCTGTGTAGCC	NA	False	NA	NA	False	NA	NA	NA	31189400	31193028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_31189480_31190510_31190633_31192288
transcript_87005.known	chr3	-	6185	17	FSM	ENSMUSG00000038170.16	ENSMUST00000045243.15	6185	17	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_16	8.347903928532	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATCAAGTTCTTATAG	NA	False	NA	-9	True	AATAAA	-15	NA	97675325	97646169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_97648762_97649804_97649918_97650480_97650619_97650801_97650919_97653987_97654080_97654832_97654915_97655080_97655252_97659124_97659320_97660331_97660512_97661441_97661580_97661747_97661862_97662754_97662914_97664199_97664413_97664519_97664613_97664847_97664968_97666114_97666247_97673789
transcript_87008.nic	chr3	-	2814	11	ISM	ENSMUSG00000038170.16	ENSMUST00000168438.9	8264	46	186025	0	-5415	0	3prime_fragment	FALSE	canonical	1	1	junction_10	3.10644491340181	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTCCTTTGCTTCTCA	191	False	NA	NA	False	ATTAAA	-21	NA	97609998	97597139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_97598170_97599636_97599684_97599911_97600051_97601251_97601396_97602207_97602435_97603194_97603315_97604305_97604531_97606424_97606550_97607110_97607301_97608873_97608994_97609551
transcript_87009.known	chr3	+	1355	5	FSM	ENSMUSG00000027879.10	ENSMUST00000130778.2	1355	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	133.810500335362	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGCCTTGAAATTATAT	NA	False	NA	-25	True	ATTAAA	-11	NA	97808531	97829167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_97808737_97814540_97814647_97819894_97820056_97821815_97821963_97828431
transcript_8701.known	chr10	-	969	8	FSM	ENSMUSG00000000296.9	ENSMUST00000213528.2	969	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	226.139563192327	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTTCTGAATTCTTGT	NA	False	NA	55	True	AATAGA	-19	NA	31321851	31208622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31219007_31219023_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_87012.known	chr3	+	1177	4	FSM	ENSMUSG00000027879.10	ENSMUST00000122288.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_2	4.18993502999218	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	TTTAAA	-29	NA	97808542	97822527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815
transcript_87014.known	chr3	+	640	2	FSM	ENSMUSG00000027879.10	ENSMUST00000130620.2	640	2	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTGTGTTGTTTCCTTGT	NA	False	NA	NA	False	AATAAA	-44	NA	97808540	97814980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_97808737_97814536
transcript_87016.known	chr3	+	3290	10	FSM	ENSMUSG00000027875.13	ENSMUST00000090746.3	3290	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.05409255338946	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCTGGCTGAGTGAATGA	NA	False	NA	NA	False	AATAAA	-23	NA	98187750	98218054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_98187904_98198202_98198658_98203451_98203578_98204285_98204451_98204693_98204860_98206435_98206607_98208888_98208996_98209937_98210064_98210480_98210593_98216345
transcript_87026.known	chr3	-	1893	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	0	0	0	0	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	5969	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98247306	98220485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
transcript_8703.known	chr10	-	1308	7	FSM	ENSMUSG00000000296.9	ENSMUST00000000305.7	1308	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	224.403654159196	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGATCTTTTATTTC	NA	False	NA	-3	True	ATTAAA	-17	NA	31321954	31208371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_87046.known	chr3	+	4410	6	FSM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	3.66606055596467	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAGTAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	99048383	99127519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971_99122091_99123774
transcript_87052.known	chr3	+	3566	8	FSM	ENSMUSG00000027868.12	ENSMUST00000029462.10	3566	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.73073281634303	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGTGTTTGTTCATA	NA	False	NA	NA	False	AATAAA	-15	NA	99161075	99261575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_99161402_99216145_99216360_99220328_99220431_99222059_99222232_99223506_99223675_99233699_99233765_99247865_99247964_99259154
transcript_87056.nic	chr3	-	3394	27	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_25	119.848400294933	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069740	100045495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335_100068539_100069659
transcript_87059.known	chr3	-	3432	27	FSM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_13	50.4098586206493	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069723	100045495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
transcript_8706.known	chr10	-	827	6	FSM	ENSMUSG00000000296.9	ENSMUST00000213639.2	827	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	219.239230066154	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATAGACAACCTGG	NA	False	NA	25	True	NA	NA	NA	31321793	31208652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_31208966_31214180_31214242_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_87066.nic	chr3	-	2423	22	ISM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	-17	4321	-17	0	5prime_fragment	FALSE	canonical	3	562	junction_8	49.8793555830334	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAAAAATGAAAGAACACAG	NA	False	NA	NA	False	AAGAAA	-3	NA	100069740	100049816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
transcript_8707.known	chr10	-	857	6	FSM	ENSMUSG00000000296.9	ENSMUST00000215515.2	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	227.386543137451	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTTCTGAATTCTTGT	NA	False	NA	55	True	AATAGA	-19	NA	31321815	31208622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_31208966_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_87071.known	chr3	+	3008	14	FSM	ENSMUSG00000027865.11	ENSMUST00000029459.10	3008	14	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_11	11.7054581917706	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTATAAGGTGTTCTAT	NA	False	NA	NA	False	AATAAA	-13	NA	100069696	100114297	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
transcript_87078.known	chr3	+	2014	13	FSM	ENSMUSG00000027865.11	ENSMUST00000106997.2	2014	13	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_11	11.971029845237	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100069833	100109786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289
transcript_87084.known	chr3	-	5640	2	FSM	ENSMUSG00000044468.15	ENSMUST00000061455.9	5640	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCAGTTATGCTCCTTA	NA	False	NA	NA	False	AATAAA	-24	NA	100396640	100375372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_100380782_100396409
transcript_87085.known	chr3	-	7969	13	FSM	ENSMUSG00000008763.17	ENSMUST00000008907.14	7969	13	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	6.86122357082823	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAAGTCTCTCTCTCTTTT	NA	False	NA	-1	True	AATAAA	-15	NA	100592819	100469523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344_100527469_100539819_100539915_100551856_100551938_100554307_100554427_100559854_100559952_100563334_100563591_100591876
transcript_87088.known	chr3	-	508	3	FSM	ENSMUSG00000008763.17	ENSMUST00000123442.2	508	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	61	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGACATGGAGATCAAGAA	NA	False	NA	NA	False	NA	NA	NA	100592624	100563376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_100563591_100591876_100592004_100592457
transcript_87089.nic	chr3	-	1671	2	ISM	ENSMUSG00000008763.17	ENSMUST00000123442.2	508	3	-709	0	-514	0	intron_retention	FALSE	canonical	3	133	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGACATGGAGATCAAGAA	NA	False	NA	NA	False	NA	NA	NA	100593333	100563376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_100563591_100591876
transcript_8709.known	chr10	-	1103	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTGGATCTTTTATTT	NA	False	NA	-4	True	ATTAAA	-16	NA	31321850	31208372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_87090.nic	chr3	-	1530	2	ISM	ENSMUSG00000008763.17	ENSMUST00000123442.2	508	3	-709	141	-514	-141	intron_retention	FALSE	canonical	3	133	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAAAGTCAAGAGAGGA	NA	False	NA	NA	False	AAGAAA	-3	NA	100593333	100563517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_100563591_100591876
transcript_87091.known	chr3	-	352	2	FSM	ENSMUSG00000008763.17	ENSMUST00000146818.2	352	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATCCATGGACCCGACG	NA	False	NA	NA	False	NA	NA	NA	100592775	100591909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_100591944_100592457
transcript_87093.known	chr3	+	4612	6	FSM	ENSMUSG00000033233.18	ENSMUST00000037409.13	4612	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	2.33238075793812	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTTTGGCTTTACT	4331	False	NA	NA	False	NA	NA	NA	100829790	100841327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_100830716_100832256_100832991_100834540_100834671_100835370_100835486_100837132_100837260_100838746
transcript_87099.nnic	chr3	-	4517	24	NNC	ENSMUSG00000033222.17	novel	4541	23	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	56.9387957813331	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGATGCTGTGTGTT	NA	False	NA	-7	True	AATAAA	-17	NA	100877015	100846175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870184_100870243_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
transcript_87102.known	chr3	-	4541	23	FSM	ENSMUSG00000033222.17	ENSMUST00000076941.12	4541	23	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_14	22.0712594988997	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGATGCTGTGTGTT	NA	False	NA	-7	True	AATAAA	-17	NA	100876979	100846175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
transcript_87114.known	chr3	-	4544	17	FSM	ENSMUSG00000033222.17	ENSMUST00000127357.2	4544	17	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_8	24.5750604017569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100876979	100853665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
transcript_87120.nic	chr3	-	1818	10	ISM	ENSMUSG00000033222.17	ENSMUST00000127357.2	4544	17	-36	9901	-36	2509	5prime_fragment	FALSE	canonical	3	226	junction_1	16.7339383098548	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAATCAGCAGAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	100877015	100863566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
transcript_87121.nic	chr3	-	458	5	ISM	ENSMUSG00000033222.17	ENSMUST00000127357.2	4544	17	-36	17000	-36	-4590	5prime_fragment	FALSE	canonical	3	252	junction_2	7.62807315119618	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTCGAACGAAAACAGTTT	NA	False	NA	NA	False	NA	NA	NA	100877015	100870665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
transcript_87127.known	chr3	-	5902	9	FSM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_8	11.5515150521479	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTTGTGTGAGGAAGTT	4781	False	NA	-3	True	ATTAAA	-18	NA	101017594	100947547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_100950839_100952759_100953066_100957405_100957514_100963551_100963972_100967952_100968379_100980125_100980507_100984358_100984773_100987443_100987813_101017407
transcript_87131.known	chr3	-	1153	5	FSM	ENSMUSG00000027863.9	ENSMUST00000029456.5	1153	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCCCACTCTTCCGTCT	NA	False	NA	NA	False	AATAAA	-31	NA	101195255	101183214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_101183590_101187103_101187227_101190346_101190578_101194722_101195032_101195140
transcript_87132.nic	chr3	+	4957	12	NIC	ENSMUSG00000042035.12	novel	7371	11	NA	NA	-12	417	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	19.1665169475527	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTTTCTTTTTTTTTCT	240	False	NA	NA	False	AATATA	-7	NA	101284386	101367889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101340230_101340291_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
transcript_87133.nic	chr3	+	5325	12	NIC	ENSMUSG00000042035.12	novel	7371	11	NA	NA	-73	724	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	19.1665169475527	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGCCAACCTGAAGGAAGG	179	False	NA	NA	False	NA	NA	NA	101284325	101368196	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101340230_101340291_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
transcript_87135.known	chr3	+	7371	11	FSM	ENSMUSG00000042035.12	ENSMUST00000043983.11	7371	11	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	19.1627242322171	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTTGCCACATGCTGAA	252	False	NA	14	True	NA	NA	NA	101284398	101370375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
transcript_87140.known	chr3	+	1855	2	FSM	ENSMUSG00000042035.12	ENSMUST00000198995.5	1855	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAGAAAAAAAAGAAA	252	False	NA	NA	False	NA	NA	NA	101284398	101286856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_101284519_101285121
transcript_8715.known	chr10	-	11013	6	FSM	ENSMUSG00000063760.10	ENSMUST00000081989.8	11013	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	4.8	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTCATGTCTTTTTTCC	NA	False	NA	NA	False	AATAAA	-15	NA	31485180	31369188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_31378728_31379746_31379819_31381768_31381971_31393379_31393545_31410658_31410893_31484379
transcript_87161.known	chr3	-	3679	23	FSM	ENSMUSG00000033161.11	ENSMUST00000036493.8	3679	23	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_17	44.2662166204014	4603	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGAGTCCTTGTCGTTT	NA	False	NA	-6	True	AATAAA	-24	NA	101512000	101483534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497082_101497282_101497762_101498032_101498436_101498555_101498655_101498791_101499096_101499211_101499693_101499898_101501518_101501579_101502313_101502425_101511718
transcript_8717.known	chr10	-	2717	6	FSM	ENSMUSG00000019785.15	ENSMUST00000019920.13	2717	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.82842712474619	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAGATGTCATGGAAAAT	NA	False	NA	NA	False	AATAAA	-18	NA	33500765	33388281	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_33389343_33404318_33404540_33419377_33419489_33471739_33471915_33498539_33499055_33500131
transcript_8719.known	chr10	-	1027	5	FSM	ENSMUSG00000019785.15	ENSMUST00000159533.9	1027	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.6809513236909	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAGCCATATATCTGCT	NA	False	NA	NA	False	ATTAAA	-16	NA	33500192	33388883	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_33389343_33404318_33404540_33419377_33419489_33471739_33471915_33500131
transcript_8721.known	chr10	+	3650	6	FSM	ENSMUSG00000039552.15	ENSMUST00000169670.8	3650	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAATTCACTA	NA	False	NA	NA	False	NA	NA	NA	33781106	33792017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_33781835_33784062_33784298_33785008_33785747_33787501_33787647_33788957_33789076_33790331
transcript_87235.known	chr3	-	3558	7	FSM	ENSMUSG00000044313.14	ENSMUST00000061831.11	3558	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.34370962471642	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGTGTCTTATGTAAC	NA	False	NA	NA	False	AGTAAA	-19	NA	101743539	101720391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_101722569_101725938_101726134_101726681_101726861_101730555_101730848_101734046_101734188_101742309_101742581_101743236
transcript_87236.known	chr3	-	6531	8	FSM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	79.9721890434929	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCATAGTGCAGTTCTTG	NA	False	NA	NA	False	AATAAA	-17	NA	102112009	102060898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153_102074288_102091266_102091875_102096724_102096864_102104107_102104293_102111827
transcript_87239.nic	chr3	-	1956	7	ISM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	-48	9424	-48	179	5prime_fragment	FALSE	canonical	3	72	junction_3	85.9348913745491	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCGTCTCTCTGGCCCA	NA	False	NA	-9	True	NA	NA	NA	102112057	102070322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_102070850_102072670_102072804_102074153_102074288_102091266_102091875_102096724_102096864_102104107_102104293_102111827
transcript_87247.nic	chr3	-	2793	4	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	514	-1463	-476	0	3prime_fragment	FALSE	canonical	3	141	junction_3	77.2801541291309	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	102073732	102064032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088
transcript_87254.known	chr3	-	472	3	FSM	ENSMUSG00000027860.16	ENSMUST00000162361.2	472	3	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_2	87.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGCATGGAGAGTATCC	NA	False	NA	NA	False	NA	NA	NA	102073256	102070678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_102070850_102072670_102072804_102073088
transcript_8726.known	chr10	-	2180	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218055.2	2180	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	16.213882940246	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827255	33795137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
transcript_87260.known	chr3	-	617	3	FSM	ENSMUSG00000027860.16	ENSMUST00000160226.8	617	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	64	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102074289	102070501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_102070850_102072670_102072804_102074153
transcript_87261.known	chr3	+	4484	8	FSM	ENSMUSG00000027858.14	ENSMUST00000029451.12	4484	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	8.2065180664829	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACAGAGGAACTACTGAA	NA	False	NA	NA	False	ATTAAA	-31	NA	102641844	102679608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102642382_102657073_102657177_102664608_102664707_102665472_102665548_102666625_102666725_102668212_102668285_102672500_102672585_102676192
transcript_87272.nic	chr3	-	885	11	NIC	ENSMUSG00000027855.14	novel	3189	33	NA	NA	-29	2476	combination_of_known_junctions	FALSE	canonical	3	35	junction_10	21.0667985227941	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGTAAGAATACATATAAA	NA	False	NA	NA	False	GATAAA	-23	NA	102843445	102827847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
transcript_87273.nic	chr3	-	890	11	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	-28	2476	combination_of_known_junctions	TRUE	canonical	3	68	junction_10	14.7118999452824	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGTAAGAATACATATAAA	NA	False	NA	NA	False	GATAAA	-23	NA	102843444	102827847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
transcript_87274.nic	chr3	-	822	11	NIC	ENSMUSG00000027855.14	novel	3189	33	NA	NA	-29	2413	combination_of_known_junctions	FALSE	canonical	3	35	junction_10	21.0667985227941	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGATTTAACATTTCTG	NA	False	NA	NA	False	AATAAA	-2	NA	102843445	102827910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
transcript_87275.nic	chr3	-	827	11	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	-28	2413	combination_of_known_junctions	FALSE	canonical	3	68	junction_10	14.7118999452824	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGATTTAACATTTCTG	NA	False	NA	NA	False	AATAAA	-2	NA	102843444	102827910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
transcript_87281.nic	chr3	-	493	6	ISM	ENSMUSG00000027855.14	ENSMUST00000199930.2	665	9	-38	8634	-28	-8634	5prime_fragment	FALSE	canonical	3	68	junction_5	10.1587400793602	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTAATAAAGGAGTAAGT	NA	False	NA	NA	False	AATAAA	-1	NA	102843444	102838957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
transcript_87284.known	chr3	-	665	9	FSM	ENSMUSG00000027855.14	ENSMUST00000199930.2	665	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	14.5666571319572	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGTGTAGGATTCCTAT	NA	False	NA	NA	False	NA	NA	NA	102843406	102830323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
transcript_87286.known	chr3	+	7375	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGGAAACCGTGGTGT	NA	False	NA	9	True	NA	NA	NA	102903023	102915775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
transcript_87292.nic	chr3	+	549	3	ISM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	-6	11040	-6	68	5prime_fragment	FALSE	canonical	3	384	junction_2	20	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGAAATCGTGGGGTC	NA	False	NA	NA	False	AATAAA	-13	NA	102903017	102904735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_102903284_102903471_102903578_102904558
transcript_87293.known	chr3	+	2418	2	FSM	ENSMUSG00000027854.13	ENSMUST00000151065.2	2418	2	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGGAAAGGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	102903045	102906567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102904702_102905805
transcript_87299.known	chr3	+	4185	20	FSM	ENSMUSG00000068823.11	ENSMUST00000199420.5	4185	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	5440.27575987562	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927928	102965502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102927986_102936104_102936529_102943890_102944038_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_87305.known	chr3	+	4318	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927741	102965502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_87319.known	chr3	+	3849	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACAATGACAAGGGTCAG	NA	False	NA	NA	False	NA	NA	NA	102927922	102965307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_87328.known	chr3	+	3827	19	FSM	ENSMUSG00000068823.11	ENSMUST00000197488.5	3827	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	4738.14950757918	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATCCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	102927979	102965120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102928208_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_87336.known	chr3	+	3457	18	FSM	ENSMUSG00000068823.11	ENSMUST00000199240.5	3457	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	5214.76529411098	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATCCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	102927928	102965120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102927986_102936104_102936529_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_8735.known	chr10	-	1090	7	FSM	ENSMUSG00000019782.11	ENSMUST00000019917.6	1090	7	0	0	0	0	multi-exon	FALSE	canonical	3	1217	junction_2	78.0243907733701	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTTTACTTCCTCTTA	NA	False	NA	-23	True	AATAAA	-23	NA	33895620	33872550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_33872845_33877132_33877196_33877653_33877787_33878419_33878564_33884988_33885120_33888067_33888134_33895361
transcript_87361.known	chr3	+	4470	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	0	0	0	0	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCCTACTGCCATAGGG	NA	False	NA	26	True	AATAAA	-28	NA	102965600	102975230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
transcript_8737.nic	chr10	-	694	5	ISM	ENSMUSG00000019782.11	ENSMUST00000019917.6	1090	7	-4	5146	-4	1671	5prime_fragment	FALSE	canonical	3	1224	junction_1	76.5583927469745	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGAATGAAAGAAGAGGAGCA	NA	False	NA	NA	False	ATTAAA	-7	NA	33895624	33877696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_33877787_33878419_33878564_33884988_33885120_33888067_33888134_33895361
transcript_87373.known	chr3	+	831	6	FSM	ENSMUSG00000027852.15	ENSMUST00000200069.5	831	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_5	301.169453962383	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAATAGACCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	102965682	102971715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971549
transcript_8738.nic	chr10	-	738	4	ISM	ENSMUSG00000019782.11	ENSMUST00000019917.6	1090	7	-191	5922	-191	895	5prime_fragment	FALSE	canonical	3	1330	junction_1	37.9678226338508	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAGAGGAAGAAAAGAAG	NA	False	NA	NA	False	AAGAAA	-34	NA	33895811	33878472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_33878564_33884988_33885120_33888067_33888134_33895361
transcript_87383.nic	chr3	+	4993	19	NIC	ENSMUSG00000007379.16	novel	4879	18	NA	NA	26	0	combination_of_known_junctions	FALSE	canonical	3	218	junction_1	23.362415738442	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCACAGATCTCTTGGAG	NA	False	NA	NA	False	GATAAA	-16	NA	103009945	103077054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
transcript_87385.known	chr3	+	4979	19	FSM	ENSMUSG00000007379.16	ENSMUST00000172288.3	4979	19	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	61.6686686361723	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCACAGATCTCTTGGAG	4717	False	NA	NA	False	GATAAA	-16	NA	103034871	103077054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103034967_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
transcript_87391.known	chr3	+	4879	18	FSM	ENSMUSG00000007379.16	ENSMUST00000173206.8	4879	18	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_4	64.3554145131754	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCACATAAGATGTGTAG	NA	False	NA	NA	False	TTTAAA	-36	NA	103009919	103077085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
transcript_87393.known	chr3	+	2626	15	FSM	ENSMUSG00000007379.16	ENSMUST00000174060.8	2626	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	95.2348332774713	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGAGTTTTGGTGTTTA	4007	False	NA	NA	False	ATTAAA	-22	NA	103047641	103075980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103047848_103048374_103048472_103053827_103053877_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
transcript_87397.nic	chr3	+	3155	7	NIC	ENSMUSG00000007379.16	novel	3060	12	NA	NA	26	-9206	combination_of_known_junctions	FALSE	canonical	3	218	junction_1	26.2466929133727	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTAGGAAGTTTCAGCTT	NA	False	NA	NA	False	NA	NA	NA	103009945	103055382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827
transcript_8740.known	chr10	-	5323	2	FSM	ENSMUSG00000049872.9	ENSMUST00000069125.8	5323	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGATTGGTCTAGTTTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	33972515	33963810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_33968512_33971893
transcript_87400.known	chr3	+	3578	14	FSM	ENSMUSG00000007379.16	ENSMUST00000173037.8	3578	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	71.904193325226	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	4649	False	NA	NA	False	GATAAA	-9	NA	103048283	103077047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103048472_103053827_103053877_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
transcript_87401.known	chr3	+	1405	7	FSM	ENSMUSG00000005687.15	ENSMUST00000135017.2	1405	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	1366.36225268249	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTCATTTTAATCCC	5046	False	NA	NA	False	NA	NA	NA	103079087	103086482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
transcript_87404.known	chr3	+	1467	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	0	0	0	0	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	2872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATATGTT	4929	False	NA	NA	False	NA	NA	NA	103078970	103086468	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
transcript_87405.known	chr3	+	2717	6	FSM	ENSMUSG00000005687.15	ENSMUST00000139489.8	2717	6	0	0	0	0	multi-exon	FALSE	canonical	3	3472	junction_4	182.433111029769	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATGTGTGGCTATAG	5023	False	NA	48	True	AATAAA	-16	NA	103079064	103086143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103084736_103085670
transcript_87408.known	chr3	+	3878	5	FSM	ENSMUSG00000005687.15	ENSMUST00000136937.8	3878	5	0	0	0	0	multi-exon	FALSE	canonical	3	3803	junction_1	91.1564589044572	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTTTATGTGTGGCTAT	4977	False	NA	46	True	AATAAA	-14	NA	103079018	103086141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103084736_103085670
transcript_8741.known	chr10	-	1094	2	FSM	ENSMUSG00000046031.8	ENSMUST00000062784.8	1094	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTCTCCCAAGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	34003980	34002062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_34002563_34003386
transcript_87412.known	chr3	+	8875	20	FSM	ENSMUSG00000033014.13	ENSMUST00000029444.13	8875	20	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_7	11.658340255239	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTCTTTTTGAGACC	NA	False	NA	NA	False	ATTAAA	-32	NA	103186608	103266091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103187763_103217624_103217744_103218139_103218285_103218696_103218830_103228860_103228978_103231960_103232076_103233403_103233551_103234107_103234226_103236353_103236629_103237395_103237561_103238925_103239124_103244714_103244848_103246595_103246660_103248875_103249036_103251609_103251960_103253960_103254085_103255636_103255712_103259318_103259472_103260882_103260934_103261012
transcript_87414.known	chr3	+	5025	19	FSM	ENSMUSG00000033014.13	ENSMUST00000106860.6	5025	19	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_18	26.2196914974647	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCTTTGGGTTGTTTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	103187194	103262878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103187763_103217624_103217744_103218139_103218285_103218696_103218830_103228860_103228978_103231960_103232076_103233403_103233551_103234107_103234226_103236353_103236629_103237395_103237561_103238925_103239124_103244714_103244848_103246595_103246660_103248875_103249036_103251609_103251960_103253960_103254085_103255636_103255712_103259318_103259472_103261012
transcript_87419.known	chr3	-	2115	1	FSM	ENSMUSG00000087119.5	ENSMUST00000117271.3	2115	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	103553384	103551269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_103551300_103553400
transcript_87420.known	chr3	-	4345	4	FSM	ENSMUSG00000027845.16	ENSMUST00000029435.15	4345	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	4.71404520791032	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTATACTGTTTCCTT	NA	False	NA	-1	True	AATAAA	-15	NA	103716760	103707920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_103711372_103714709_103714893_103715387_103715554_103716215
transcript_87423.known	chr3	-	4113	3	FSM	ENSMUSG00000027845.16	ENSMUST00000063502.13	4113	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	24.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTATACTGTTTCCTT	NA	False	NA	-1	True	AATAAA	-15	NA	103716694	103707920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_103711372_103714709_103714893_103716215
transcript_87428.nnic	chr3	+	2894	11	NNC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	-67	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.1099525101254	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716768	103729341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_103717104_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_87429.known	chr3	+	2692	11	FSM	ENSMUSG00000032952.12	ENSMUST00000076599.8	2692	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	21.5548138474912	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTGCCTGTCGTCAC	NA	False	NA	15	True	ATTAAA	-19	NA	103716835	103729339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103716971_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_87430.known	chr3	+	2799	10	FSM	ENSMUSG00000032952.12	ENSMUST00000047285.7	2799	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	8.73053390247253	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716943	103729341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_87435.known	chr3	+	2741	9	FSM	ENSMUSG00000032952.12	ENSMUST00000106823.8	2741	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	24.0468293128221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTGCCTGTCGTCAC	NA	False	NA	15	True	ATTAAA	-19	NA	103716915	103729339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_87438.known	chr3	+	3327	19	FSM	ENSMUSG00000058388.15	ENSMUST00000063717.14	3327	19	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	13.8399136513399	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGTTTCTAGGCTTT	NA	False	NA	6	True	AATAAA	-16	NA	103875573	103914804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103876104_103876370_103876447_103877069_103877127_103889201_103889272_103890261_103890421_103893068_103893226_103894742_103894878_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
transcript_8744.known	chr10	-	4389	6	FSM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	20.6164982477626	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTCTCCTGCTCTGGTG	NA	False	NA	-10	True	AATAAA	-14	NA	34083711	34027388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059687_34060157_34083075
transcript_87443.known	chr3	+	3006	18	FSM	ENSMUSG00000058388.15	ENSMUST00000090685.11	3006	18	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_6	21.1329618398503	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTTTCTAGGCTTTTT	NA	False	NA	8	True	AATAAA	-18	NA	103875761	103914806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103876104_103876370_103876447_103877069_103877127_103889201_103889272_103890261_103890421_103893068_103893226_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
transcript_87444.known	chr3	+	3060	18	FSM	ENSMUSG00000058388.15	ENSMUST00000055425.15	3060	18	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	22.8624592186075	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTTTCTAGGCTTTTT	NA	False	NA	8	True	AATAAA	-18	NA	103875683	103914806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_103876104_103876370_103876447_103877069_103877127_103889201_103889272_103893068_103893226_103894742_103894878_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
transcript_87445.nic	chr3	+	3236	18	NIC	ENSMUSG00000058388.15	novel	3327	19	NA	NA	34	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	19.101984534304	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGTTTCTAGGCTTT	NA	False	NA	6	True	AATAAA	-16	NA	103875607	103914804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_103876104_103876370_103876447_103889201_103889272_103890261_103890421_103893068_103893226_103894742_103894878_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
transcript_87467.nic	chr3	+	699	2	ISM	ENSMUSG00000044098.15	ENSMUST00000151927.4	3649	8	-32	35441	-32	-31706	5prime_fragment	FALSE	canonical	3	60	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCGAGAAGACATGAGAGG	NA	False	NA	NA	False	AATAAA	-20	NA	103821850	103835746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_103822470_103835666
transcript_87469.known	chr3	-	7099	18	FSM	ENSMUSG00000032913.14	ENSMUST00000046316.11	7099	18	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	14.2253246568117	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTGGTCTTCTCTTGCC	NA	False	NA	-20	True	AATAAA	-16	NA	104419156	104361295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_104365281_104368716_104369005_104369974_104370125_104371174_104371625_104372802_104373085_104374358_104374680_104375800_104375965_104387097_104387167_104387424_104387497_104389170_104389252_104397845_104397990_104398183_104398328_104398726_104398871_104399004_104399149_104401373_104401509_104401946_104402022_104404804_104404871_104418771
transcript_87470.known	chr3	-	3946	18	FSM	ENSMUSG00000032913.14	ENSMUST00000198332.2	3946	18	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	20.1729545898912	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGACCTTGTGTGTTGGAT	NA	False	NA	-6	True	CATAAA	-15	NA	104419172	104364443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_104365281_104368716_104369005_104369974_104370104_104371174_104371625_104372802_104373085_104374358_104374680_104375800_104375965_104387097_104387167_104387424_104387497_104389170_104389252_104397845_104397990_104398183_104398328_104398726_104398871_104399004_104399149_104401373_104401509_104401946_104402022_104404804_104404871_104418771
transcript_87482.known	chr3	+	4426	5	FSM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	0	0	0	0	multi-exon	FALSE	canonical	3	470	junction_2	50.2462685181696	957	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAATATTACTTGTATAT	NA	False	NA	NA	False	NA	NA	NA	104545983	104565778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_104546145_104556573_104556834_104558201_104558346_104560057_104560904_104562763
transcript_87485.known	chr3	+	2864	1	FSM	ENSMUSG00000105199.2	ENSMUST00000196766.2	2864	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAGAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	104550309	104553173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_104550300_104553200
transcript_87487.known	chr3	+	1721	10	FSM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	13.4200881305638	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104688371	104693334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
transcript_87495.known	chr3	+	959	5	FSM	ENSMUSG00000002233.14	ENSMUST00000106787.8	959	5	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	97.4586450757448	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGCTCACAGGAGGAGT	NA	False	NA	NA	False	NA	NA	NA	104696349	104701660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_104696418_104699204_104699369_104699880_104700002_104700215_104700347_104701185
transcript_8751.nnic	chr10	-	660	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-104	693	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	24.9131825880731	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109631	34106209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_34106388_34106902_34107071_34107314_34107400_34109402
transcript_87512.known	chr3	-	3584	21	FSM	ENSMUSG00000002227.16	ENSMUST00000166979.8	3584	21	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_20	290.136325716033	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725879	104702151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725438_104725672
transcript_87514.known	chr3	-	3460	21	FSM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_20	265.434944948852	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725621	104702151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725573
transcript_8752.nnic	chr10	-	626	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-50	693	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	34.5671648951558	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109577	34106209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_34106388_34106902_34107071_34107314_34107420_34109402
transcript_87529.nic	chr3	-	3882	20	ISM	ENSMUSG00000002227.16	ENSMUST00000166979.8	3584	21	-63	0	-63	0	intron_retention	FALSE	canonical	3	1102	junction_11	86.7727314610285	2605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725942	104702151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
transcript_8753.nnic	chr10	-	533	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-62	693	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	27.5	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109589	34106209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_34106388_34106902_34107071_34109402
transcript_8754.known	chr10	-	2727	12	FSM	ENSMUSG00000039480.15	ENSMUST00000105512.8	2727	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	20.4676725553911	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	-1	True	AATAAA	-17	NA	34294535	34179604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274192_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_87583.known	chr3	-	3498	20	FSM	ENSMUSG00000002227.16	ENSMUST00000002297.12	3498	20	0	0	0	0	multi-exon	TRUE	canonical	2	35	junction_17	294.113899959836	2400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725558	104702151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711702_104711786_104712030_104712219_104712424_104725251
transcript_87584.known	chr3	-	3718	21	FSM	ENSMUSG00000002227.16	ENSMUST00000106774.8	3718	21	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_17	372.241249057651	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725879	104702151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711702_104711786_104712030_104712219_104712424_104725251_104725473_104725573
transcript_87592.known	chr3	+	5728	14	FSM	ENSMUSG00000045576.17	ENSMUST00000059271.13	5728	14	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_11	6.94526359402813	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTTGTCCTGCTTCTTA	80	False	NA	NA	False	AGTAAA	-12	NA	104771818	104837380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
transcript_87594.known	chr3	+	2428	14	FSM	ENSMUSG00000045576.17	ENSMUST00000106769.8	2428	14	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_11	18.8082821993382	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTAGTGTATTTTCTTT	80	False	NA	29	True	AATACA	-40	NA	104771818	104834176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826762_104826818_104829502_104829596_104833745
transcript_87597.nnic	chr3	-	3021	11	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	0	-154	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	532.597230559829	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTCCTTTCTGTC	9278	False	NA	-11	True	AATACA	-18	NA	104771716	104730248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_104732441_104732722_104732786_104735240_104735328_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
transcript_87599.known	chr3	-	3193	10	FSM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	396.900211360208	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCTTCCTGAGTGTGA	9173	False	NA	NA	False	AGTAAA	-22	NA	104771821	104730094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
transcript_87602.known	chr3	+	2455	1	FSM	ENSMUSG00000045576.17	ENSMUST00000199186.2	2455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCATTTATTTTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	104771320	104773775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_104771300_104773800
transcript_87603.known	chr3	-	681	6	FSM	ENSMUSG00000062127.12	ENSMUST00000197437.5	681	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	30.009331881933	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGAGGAGCGCACCCGC	1469	False	NA	NA	False	AAAAAG	-35	NA	104960270	104913380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_104913445_104915263_104915372_104918508_104918740_104939968_104940069_104946180_104946304_104960215
transcript_87606.known	chr3	-	2905	11	FSM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	22.5302019520465	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTTTATTCTGTCGAG	NA	False	NA	0	True	AATAAA	-23	NA	105594890	105585585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041_105590101_105590192_105590332_105590468_105590612_105590731_105590847_105591600_105591770_105593954_105594050_105594439
transcript_87608.known	chr3	-	1264	10	FSM	ENSMUSG00000027905.16	ENSMUST00000200078.5	1264	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	96.9077453618188	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAGTCCCCCAAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	105594768	105586935	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041_105590101_105590192_105590332_105590468_105590612_105590731_105590847_105593954_105594050_105594439
transcript_8761.known	chr10	-	1978	11	FSM	ENSMUSG00000039480.15	ENSMUST00000130290.2	1978	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_6	26.4469279879535	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATACATAAAGAGACATG	NA	False	NA	NA	False	NA	NA	NA	34294524	34180260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_87613.known	chr3	-	2407	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	0	0	0	0	multi-exon	TRUE	canonical	3	409	junction_7	23.7667234354495	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCCCTTCTCTTTAT	NA	False	NA	-18	True	AATAAA	-12	NA	105708652	105634582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
transcript_87627.known	chr3	+	3682	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAATTGCTTTTGTTGTT	NA	False	NA	12	True	AATAAA	-31	NA	105866684	105877076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
transcript_8763.known	chr10	-	761	7	FSM	ENSMUSG00000039480.15	ENSMUST00000099973.4	761	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	35.3714417134627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTGCTTCGTAATAC	NA	False	NA	NA	False	AATAAA	-15	NA	34294477	34273063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_34273238_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_87631.known	chr3	+	4286	9	FSM	ENSMUSG00000000561.15	ENSMUST00000130994.8	4286	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	323.092067954322	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAAGGGACTTCATG	NA	False	NA	NA	False	NA	NA	NA	105866829	105877353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_105867004_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873742_105874478
transcript_87636.known	chr3	+	1095	8	FSM	ENSMUSG00000000561.15	ENSMUST00000127464.8	1095	8	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_4	52.8737425671876	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTGTGAGTCTGAGTA	NA	False	NA	NA	False	AATATA	-16	NA	105866823	105873408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080
transcript_87640.known	chr3	-	1604	8	FSM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1650.95260071146	1709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAGTTTCATACTCTG	NA	False	NA	-20	True	AATAAA	-16	NA	105867415	105850013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463_105866875_105867241
transcript_87652.known	chr3	-	2527	3	FSM	ENSMUSG00000000563.18	ENSMUST00000153666.2	2527	3	0	0	0	0	multi-exon	FALSE	canonical	3	4727	junction_2	168.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATAAAAGAAAAAAACCTA	NA	False	NA	NA	False	GATAAA	-23	NA	105866580	105860984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_105863358_105866177_105866215_105866463
transcript_87653.known	chr3	-	407	2	FSM	ENSMUSG00000000563.18	ENSMUST00000123959.2	407	2	0	0	0	0	multi-exon	FALSE	canonical	3	4727	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCAGATTTCCATCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	105866562	105865906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_105866215_105866463
transcript_87654.known	chr3	+	2566	18	FSM	ENSMUSG00000105852.5	ENSMUST00000167642.8	2566	18	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_12	483.678415570285	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAGGAAGAGGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	105866818	105891916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478_105874676_105881728_105882360_105883286_105883344_105884979_105885146_105885589_105885715_105887213_105887323_105887407_105887594_105888548_105888666_105891888
transcript_87655.known	chr3	+	429	1	FSM	ENSMUSG00000092072.4	ENSMUST00000170669.4	429	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	400	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATTATTTATTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105941979	105942408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_105942000_105942400
transcript_87658.known	chr3	+	4050	12	FSM	ENSMUSG00000027901.13	ENSMUST00000029508.11	4050	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.52662323852242	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCACATTATCTGCATGCT	NA	False	NA	NA	False	AATAAA	-16	NA	106389746	106410346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_106390030_106394188_106394365_106395166_106395280_106395887_106395958_106397650_106397729_106398541_106398683_106399744_106399894_106402146_106402325_106406133_106406176_106406536_106406622_106407070_106407311_106407851
transcript_8766.known	chr10	+	3879	1	FSM	ENSMUSG00000039485.9	ENSMUST00000047935.8	3879	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGTCTGGGTGAATGT	NA	False	NA	NA	False	AATAAA	-7	NA	34173437	34177316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_34173400_34177300
transcript_87661.known	chr3	-	2814	9	FSM	ENSMUSG00000040774.16	ENSMUST00000068301.11	2814	9	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_8	25.7924407530579	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTTTTCATCACAGAGG	NA	False	NA	NA	False	AATAAA	-15	NA	106455118	106409575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106454995
transcript_87662.known	chr3	+	3271	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTGGTAAGTTTTAATT	NA	False	NA	NA	False	ATTAAA	-20	NA	106455113	106483206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
transcript_8767.known	chr10	+	4696	9	FSM	ENSMUSG00000019779.16	ENSMUST00000019913.15	4696	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.87082869338697	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTTTGATTCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	34359394	34487274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_34359585_34359740_34360366_34423288_34423411_34459893_34460058_34462161_34462331_34467807_34467967_34481690_34481873_34483801_34483968_34484355
transcript_87673.known	chr3	-	2020	9	FSM	ENSMUSG00000040774.16	ENSMUST00000039153.14	2020	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	105.137930239281	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106455047	106410298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106427324_106427410_106438452_106438595_106440670_106440819_106446505_106446920_106454995
transcript_87677.known	chr3	-	2121	9	FSM	ENSMUSG00000040774.16	ENSMUST00000121231.8	2121	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.7074191137345	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106454898	106410298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446913_106454738
transcript_87680.known	chr3	+	3103	4	FSM	ENSMUSG00000056260.16	ENSMUST00000098750.5	3103	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	11.8415464455544	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATGTATGGCTTTGTTT	NA	False	NA	28	True	AATAAA	-40	NA	106629251	106643890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_106629423_106638978_106640459_106641673_106641956_106642720
transcript_87682.known	chr3	+	929	3	FSM	ENSMUSG00000056260.16	ENSMUST00000098751.10	929	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	16.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCCACTGGATGCCTGA	NA	False	NA	NA	False	NA	NA	NA	106592302	106643220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_106592450_106641673_106641956_106642720
transcript_87684.known	chr3	+	1669	3	FSM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	9.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGGCTTTGTTTTGT	NA	False	NA	31	True	AATAAA	-43	NA	106629208	106643893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_106629423_106641673_106641956_106642720
transcript_87686.known	chr3	+	743	4	FSM	ENSMUSG00000087260.6	ENSMUST00000199317.2	743	4	0	0	0	0	multi-exon	FALSE	canonical	3	1062	junction_2	64.8194072447099	331	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	3151	False	NA	12	True	AATAAA	-16	NA	107186314	107191398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
transcript_8769.known	chr10	+	3406	8	FSM	ENSMUSG00000019779.16	ENSMUST00000170771.3	3406	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.59078981795143	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	34359515	34485949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_34360366_34423288_34423411_34459893_34460058_34462161_34462331_34467807_34467967_34481690_34481873_34483801_34483968_34484355
transcript_87691.known	chr3	-	4343	2	FSM	ENSMUSG00000048109.11	ENSMUST00000061772.11	4343	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGAGGAGCTCCTCCGT	NA	False	NA	NA	False	AATAAA	-14	NA	107240989	107232736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107233621_107237530
transcript_87692.known	chr3	-	5967	1	FSM	ENSMUSG00000048109.11	ENSMUST00000197769.2	5967	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATAGAGACAAT	NA	False	NA	NA	False	NA	NA	NA	107240417	107234450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107234400_107240400
transcript_87693.known	chr3	+	1874	4	FSM	ENSMUSG00000014603.4	ENSMUST00000014747.3	1874	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCCTGATCCCCAGACC	NA	False	NA	NA	False	AATAAA	-25	NA	107502346	107513092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_107502769_107507769_107508087_107511586_107511716_107512086
transcript_87695.known	chr3	-	3215	21	FSM	ENSMUSG00000014601.14	ENSMUST00000064759.7	3215	21	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_2	23.6893963620857	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTGTGTGTAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	107539010	107519847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
transcript_8770.known	chr10	-	555	2	FSM	ENSMUSG00000111753.2	ENSMUST00000214107.2	555	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	35361392	35354822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_35355139_35361153
transcript_87700.nic	chr3	-	3224	21	NIC	ENSMUSG00000014601.14	novel	3215	21	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	51.0788361261296	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCGTGTTGCCTTGTGTGT	NA	False	NA	-4	True	ATTAAA	-14	NA	107539062	107519850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_107520783_107521950_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
transcript_87701.nnic	chr3	-	3192	20	NIC	ENSMUSG00000014601.14	novel	3215	21	NA	NA	-52	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_18	52.4607754802473	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTGTGTGTAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	107539062	107519847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107535471_107535542_107538816
transcript_8771.known	chr10	-	3218	1	FSM	ENSMUSG00000063953.4	ENSMUST00000080898.4	3218	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-38	NA	35587888	35584670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_35584700_35587900
transcript_87712.known	chr3	-	3863	17	FSM	ENSMUSG00000027893.15	ENSMUST00000029490.15	3863	17	0	0	0	0	multi-exon	FALSE	canonical	3	702	junction_5	41.8762593094226	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTAGTCGTGTGTCTTT	NA	False	NA	-4	True	ATTAAA	-23	NA	107603876	107570435	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207_107577272_107577519_107577637_107578453_107578561_107579357_107579453_107580751_107580855_107581323_107581425_107582326_107582471_107585035_107585148_107603473
transcript_87725.known	chr3	-	2580	4	FSM	ENSMUSG00000027893.15	ENSMUST00000138116.2	2580	4	0	0	0	0	multi-exon	FALSE	canonical	3	753	junction_3	35.9845645921816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATAAACAGAAGGAAATG	NA	False	NA	NA	False	NA	NA	NA	107603821	107579051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107579453_107580751_107582471_107585035_107585148_107603473
transcript_87726.known	chr3	-	4176	9	FSM	ENSMUSG00000014599.11	ENSMUST00000014743.10	4176	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.36358901432946	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGGGAAAACTTGTTTT	6405	False	NA	NA	False	AATAAA	-27	NA	107667785	107648363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107650462_107654041_107654101_107654422_107654476_107655469_107656486_107657626_107657775_107661047_107661219_107662746_107662810_107663932_107664056_107667340
transcript_87727.known	chr3	+	945	8	FSM	ENSMUSG00000004032.11	ENSMUST00000004134.11	945	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	3.52252228741084	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTCTAGATGGATTTC	NA	False	NA	11	True	AATAAA	-16	NA	107803136	107806002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_107803315_107803613_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
transcript_87728.known	chr3	-	1377	8	FSM	ENSMUSG00000004035.13	ENSMUST00000004137.11	1377	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_6	2.49897938350513	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTTCTTTGGTCGG	NA	False	NA	-7	True	NA	NA	NA	107839133	107833649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107834297_107836185_107836297_107836378_107836475_107837589_107837691_107837788_107837871_107838143_107838209_107838630_107838707_107838934
transcript_87734.known	chr3	-	1153	8	FSM	ENSMUSG00000068762.12	ENSMUST00000106685.9	1153	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	8.51649060616507	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCCTGTCGTATT	1790	False	NA	-1	True	AGTAAA	-16	NA	107851065	107846162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107846633_107848308_107848420_107848504_107848601_107849448_107849550_107849648_107849731_107850017_107850083_107850560_107850637_107850913
transcript_87739.known	chr3	-	1311	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876599	107871011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
transcript_87741.nnic	chr3	-	1152	7	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	77	0	combination_of_known_splicesites	FALSE	canonical	3	37	junction_4	86.6033422501054	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876522	107871011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875451_107875517_107876078_107876155_107876420
transcript_87743.nnic	chr3	-	1051	6	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	77	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_3	88.3388929068052	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876522	107871011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107875451_107875517_107876078_107876155_107876420
transcript_87747.known	chr3	-	1064	8	FSM	ENSMUSG00000040562.13	ENSMUST00000012348.9	1064	8	0	0	0	0	multi-exon	FALSE	canonical	3	626	junction_6	40.3692143766479	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2042	False	NA	-4	True	AATAAA	-13	NA	107893769	107889017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
transcript_87748.nic	chr3	-	1398	7	NIC	ENSMUSG00000040562.13	novel	1064	8	NA	NA	-15	0	intron_retention	FALSE	canonical	3	637	junction_1	38.7298334620742	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2059	False	NA	-4	True	AATAAA	-13	NA	107893752	107889017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107893426_107893673
transcript_87752.known	chr3	-	1289	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_3	56.1666616201374	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGTTGTGTCTTTTTCT	6583	False	NA	-4	True	AATAAA	-18	NA	107925289	107919570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
transcript_87753.known	chr3	-	828	8	FSM	ENSMUSG00000058135.13	ENSMUST00000126593.3	828	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	234.969559470054	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGGGACAGCACCCTGGC	6750	False	NA	NA	False	NA	NA	NA	107925122	107919942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107920095_107922068_107922180_107922260_107922435_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
transcript_87757.known	chr3	-	1707	8	FSM	ENSMUSG00000027890.18	ENSMUST00000029489.15	1707	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	25.3175747621437	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATGTCTTTTCCTAC	NA	False	NA	-4	True	AATAAA	-20	NA	107952210	107947723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107951952
transcript_87758.known	chr3	-	777	8	FSM	ENSMUSG00000027890.18	ENSMUST00000106670.2	777	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	31.2429583903252	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTCAAAGGTCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	107952182	107948452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952125
transcript_87759.known	chr3	-	1462	8	FSM	ENSMUSG00000027890.18	ENSMUST00000178808.8	1462	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	32.937169624258	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952175	107947725	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952160
transcript_87762.known	chr3	-	3586	19	FSM	ENSMUSG00000027889.18	ENSMUST00000102637.8	3586	19	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_18	33.5369705707258	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGCATGTGAAGGTGT	NA	False	NA	-8	True	AATAAA	-15	NA	107993967	107981379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533_107993669_107993754
transcript_87768.known	chr3	-	3368	18	FSM	ENSMUSG00000027889.18	ENSMUST00000078912.7	3368	18	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_17	58.315690197265	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAAAAAGATTATTTA	NA	False	NA	-31	True	NA	NA	NA	107992715	107981402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107992562
transcript_87769.known	chr3	-	3650	18	FSM	ENSMUSG00000027889.18	ENSMUST00000102638.8	3650	18	0	0	0	0	multi-exon	TRUE	canonical	3	198	junction_12	21.7907634157735	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	107993943	107981377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
transcript_8778.known	chr10	+	2005	14	FSM	ENSMUSG00000019777.17	ENSMUST00000019911.14	2005	14	0	0	0	0	multi-exon	TRUE	canonical	3	1084	junction_4	88.4199902429095	980	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTGTCTGTTTATT	NA	False	NA	14	True	ATTAAA	-15	NA	36850539	36877885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_36850800_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876423_36877524
transcript_87806.known	chr3	-	3262	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACTTTTATTTGTCTTG	NA	False	NA	-10	True	ATTAAA	-32	NA	108053462	108014595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
transcript_87814.nic	chr3	-	991	7	ISM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	-14	4693	-14	-4693	5prime_fragment	FALSE	canonical	3	376	junction_2	46.9633426786846	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAGTCCATTAACAATCT	NA	False	NA	NA	False	AATAAA	-1	NA	108053476	108019288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
transcript_87816.known	chr3	+	1360	3	FSM	ENSMUSG00000050947.10	ENSMUST00000106659.3	1360	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTGTGGTTGGTTTATT	551	False	NA	19	True	ATTAAA	-26	NA	108093665	108099093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108093995_108094441_108095369_108098989
transcript_87817.known	chr3	+	5030	2	FSM	ENSMUSG00000050947.10	ENSMUST00000050909.7	5030	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTGTGGTTGGTTTAT	536	False	NA	18	True	ATTAAA	-25	NA	108093650	108099092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108093995_108094406
transcript_87818.known	chr3	+	5482	2	FSM	ENSMUSG00000050947.10	ENSMUST00000106656.2	5482	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCGTGGTCTGTTTGTCC	559	False	NA	NA	False	CATAAA	-20	NA	108093673	108099602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108093995_108094441
transcript_87820.known	chr3	-	4275	3	FSM	ENSMUSG00000048796.8	ENSMUST00000106655.2	4275	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGACCCAAGTCTCAG	NA	False	NA	84	True	AATAAA	-18	NA	108108150	108103002	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108107032_108107440_108107479_108107942
transcript_87821.known	chr3	-	4058	3	FSM	ENSMUSG00000048796.8	ENSMUST00000065664.7	4058	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATGCTCTGTCCTTTTC	NA	False	NA	0	True	ATTAAA	-16	NA	108108150	108103086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108107032_108107440_108107479_108108075
transcript_87823.known	chr3	-	3044	12	FSM	ENSMUSG00000048997.18	ENSMUST00000102633.9	3044	12	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_11	14.3354153142281	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTCTCCCTGTTCTGTT	2934	False	NA	NA	False	AAGAAA	-28	NA	108118250	108109537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108116232_108116412_108117660
transcript_87825.known	chr3	-	2321	11	FSM	ENSMUSG00000048997.18	ENSMUST00000117409.8	2321	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	12.8124939024376	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTCTCCCTGTTCTGTT	3382	False	NA	NA	False	AAGAAA	-28	NA	108117802	108109537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114330_108114709_108114921_108115278_108115384_108115755_108115822_108117660
transcript_87826.known	chr3	-	2387	11	FSM	ENSMUSG00000048997.18	ENSMUST00000117784.8	2387	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_7	7.33212111192934	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAAGACTGTCTCCCTGT	3406	False	NA	NA	False	AAGAAA	-22	NA	108117778	108109543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108117660
transcript_87828.known	chr3	+	1239	9	FSM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	0	0	0	0	multi-exon	FALSE	canonical	3	2544	junction_4	248.775972262194	1562	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTAATAGTCTGTGATC	NA	False	NA	11	True	AATAAA	-15	NA	108164241	108187290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
transcript_87834.known	chr3	+	6836	21	FSM	ENSMUSG00000068747.15	ENSMUST00000135636.6	6836	21	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_17	14.3960932200372	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGTAATTTTCTGTATA	4980	False	NA	-45	True	AATAAA	-21	NA	108191397	108268759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108191757_108215792_108215853_108217459_108217534_108231911_108232015_108232964_108233130_108235323_108235398_108239226_108239277_108241881_108242013_108245106_108245252_108246126_108246283_108247914_108248022_108252169_108252273_108253029_108253199_108253972_108254164_108255883_108256074_108258987_108259105_108261448_108261558_108262787_108262887_108263546_108263654_108263892_108264005_108264544
transcript_87837.known	chr3	+	6796	20	FSM	ENSMUSG00000068747.15	ENSMUST00000102632.7	6796	20	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	9.89893527949294	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTACTAAGATGAGTAAGCT	4989	False	NA	23	True	AATAAA	-23	NA	108191406	108268827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108191757_108215792_108215853_108217459_108217534_108231911_108232015_108232964_108233130_108235323_108235398_108239226_108239277_108241881_108242013_108245106_108245252_108246126_108246283_108247914_108248022_108252169_108252273_108253029_108253199_108253972_108254164_108255883_108256074_108258987_108259105_108261448_108261558_108263546_108263654_108263892_108264005_108264544
transcript_87841.known	chr3	-	2439	3	FSM	ENSMUSG00000074281.4	ENSMUST00000142833.2	2439	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGTTTCTCACCCTGC	NA	False	NA	NA	False	AATAAA	-26	NA	108291057	108286592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108288251_108289786_108290113_108290602
transcript_87843.known	chr3	+	1687	8	FSM	ENSMUSG00000068744.13	ENSMUST00000102629.8	1687	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	112.452983372553	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGCTCTCAGACATAGG	7052	False	NA	68	True	AATAAA	-16	NA	108291174	108295547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108291212_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_87847.known	chr3	+	1686	8	FSM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	57.4402973103556	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	7032	False	NA	16	True	AATAAA	-24	NA	108291154	108295495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_87856.nic	chr3	+	1745	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	155	junction_1	118.602510747267	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	7030	False	NA	16	True	AATAAA	-24	NA	108291152	108295495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_108291212_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_87860.nic	chr3	+	1809	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-35	0	intron_retention	FALSE	canonical	3	329	junction_1	60.1405760605009	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	6997	False	NA	16	True	AATAAA	-24	NA	108291119	108295495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_108291243_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_87874.known	chr3	+	680	3	FSM	ENSMUSG00000068744.13	ENSMUST00000133405.8	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	174.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGTGGAGAGTGGACA	7044	False	NA	NA	False	CATAAA	-5	NA	108291166	108292724	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108291212_108291551_108291748_108292285
transcript_87876.known	chr3	-	1866	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	False	NA	-39	True	AATAAA	-18	NA	108352485	108333927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
transcript_87881.known	chr3	-	3570	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	0	0	0	0	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	2581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAAGGTGTGGTTTATTC	NA	False	NA	NA	False	NA	NA	NA	108352514	108332180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
transcript_879.nic	chr1	+	2364	6	ISM	ENSMUSG00000037509.22	ENSMUST00000047664.16	3287	10	-23	4398	-23	0	5prime_fragment	FALSE	canonical	3	14	junction_5	6.40624695121879	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAAGGCGTG	NA	False	NA	NA	False	NA	NA	NA	34840761	34847992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_+_34841083_34843994_34844175_34845036_34845217_34845395_34845576_34846139_34846373_34846722
transcript_87902.known	chr3	-	1801	3	FSM	ENSMUSG00000068739.14	ENSMUST00000197647.2	1801	3	0	0	0	0	multi-exon	FALSE	canonical	3	2675	junction_1	18	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTCGGCTTCCTTGTCCG	NA	False	NA	NA	False	NA	NA	NA	108352472	108341712	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108343283_108344824_108344896_108352312
transcript_87904.known	chr3	-	2864	3	FSM	ENSMUSG00000068732.6	ENSMUST00000090546.6	2864	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	15	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5274	False	NA	-14	True	AATAAA	-15	NA	108469782	108463740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108466277_108467502_108467635_108469586
transcript_87905.known	chr3	-	2752	3	FSM	ENSMUSG00000068732.6	ENSMUST00000106622.3	2752	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	80.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5570	False	NA	-14	True	AATAAA	-15	NA	108469486	108463740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108466277_108467502_108467635_108469402
transcript_87906.known	chr3	+	2443	4	FSM	ENSMUSG00000048100.14	ENSMUST00000143054.2	2443	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	10.4986771653491	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108479014	108490538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108479065_108480195_108480275_108485431_108485530_108488322
transcript_87907.known	chr3	+	1655	4	FSM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_1	76.856287243718	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108479014	108489385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108479430_108480195_108480275_108485431_108485530_108488322
transcript_87909.known	chr3	+	4222	15	FSM	ENSMUSG00000040389.16	ENSMUST00000051145.15	4222	15	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	8.19064922297845	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCCTTTTCTCACGGTC	NA	False	NA	3	True	AATAAA	-18	NA	108498594	108553035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108498914_108517192_108517360_108518671_108518756_108521648_108521734_108525805_108526609_108530638_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377_108550597_108551761
transcript_87913.known	chr3	+	1088	4	FSM	ENSMUSG00000040389.16	ENSMUST00000139626.3	1088	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	3.39934634239519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAACAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	108498704	108522276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108498914_108517192_108517360_108518671_108518756_108521648
transcript_87916.known	chr3	-	3498	15	FSM	ENSMUSG00000027883.16	ENSMUST00000029482.16	3498	15	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_14	18.8820182248852	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTAATCAAGTCTTC	NA	False	NA	NA	False	AATAAA	-19	NA	108629625	108585953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108587120_108589321_108589540_108589987_108590142_108594135_108594316_108597081_108597153_108604264_108604395_108604843_108604953_108606233_108606390_108607979_108608096_108608202_108608327_108609060_108609204_108609714_108609851_108610180_108610403_108618592_108618897_108629356
transcript_87918.nic	chr3	-	2760	14	NIC	ENSMUSG00000027883.16	novel	3498	15	NA	NA	-20	-454	combination_of_known_junctions	FALSE	canonical	3	40	junction_13	22.5826555427157	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGGTTATCTGTCTCC	NA	False	NA	-4	True	AATAAA	-14	NA	108629645	108586407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_108587120_108589321_108589540_108589987_108590142_108594135_108594316_108597081_108597153_108604264_108604395_108604843_108604953_108606233_108606390_108607979_108608096_108608202_108608327_108609060_108609204_108609714_108609851_108610180_108610403_108629356
transcript_87924.nic	chr3	+	2131	12	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-21	0	combination_of_known_junctions	TRUE	canonical	3	126	junction_1	23.1716555264122	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATTTTGGTCTGGTGTGC	6575	False	NA	2	True	AATAAA	-14	NA	108561207	108586152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
transcript_87927.known	chr3	+	2043	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	36.8117839559091	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6596	False	NA	6	True	AATAAA	-18	NA	108561228	108586156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
transcript_87940.known	chr3	+	358	4	FSM	ENSMUSG00000027884.17	ENSMUST00000124384.8	358	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	42.0079357582191	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGAAAGATTATGAAAG	6641	False	NA	NA	False	NA	NA	NA	108561273	108570860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839
transcript_87941.known	chr3	+	2224	13	FSM	ENSMUSG00000027884.17	ENSMUST00000029483.15	2224	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	68.2598690463307	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATTTTGGTCTGGTGTGC	6641	False	NA	2	True	AATAAA	-14	NA	108561273	108586152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_108561368_108561907_108562067_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
transcript_87943.known	chr3	-	2419	19	FSM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	0	0	0	0	multi-exon	FALSE	canonical	1	38	junction_10	22.0233461984726	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGAGTTTTTCTTTCT	NA	False	NA	3	True	AATAAA	-17	NA	108747827	108700491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
transcript_87947.known	chr3	-	1789	4	FSM	ENSMUSG00000027882.19	ENSMUST00000138552.6	1789	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	6.84754619472471	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAGAAAAGAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	108747842	108731848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108733399_108734341_108734424_108734888_108734939_108747735
transcript_87948.known	chr3	-	553	5	FSM	ENSMUSG00000027882.19	ENSMUST00000106596.4	553	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	53.7331368896326	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTGTACTGCTCCCA	NA	False	NA	NA	False	AATAAA	-21	NA	108747826	108732933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108733187_108733321_108733399_108734341_108734424_108734888_108734939_108747735
transcript_87955.known	chr3	-	3050	7	FSM	ENSMUSG00000027881.15	ENSMUST00000129273.8	3050	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	171.074707527313	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGGTGTTGGTTTCCCC	6881	False	NA	-7	True	AATAAA	-20	NA	108819012	108810120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108817658_108817712_108818479
transcript_87956.known	chr3	-	2508	7	FSM	ENSMUSG00000027881.15	ENSMUST00000199735.5	2508	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	184.380418941082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTGGGAGAGGGCGGGG	7109	False	NA	NA	False	ATTAAA	-40	NA	108818784	108810462	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108812079_108812426_108812651_108813233_108813305_108815102_108815164_108815247_108815400_108815641_108815721_108818479
transcript_87960.known	chr3	-	3026	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_4	114.013332553697	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	6850	False	NA	-9	True	AATAAA	-18	NA	108819043	108810122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
transcript_87968.known	chr3	+	3431	10	FSM	ENSMUSG00000040322.11	ENSMUST00000029477.11	3431	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	3.55902608401044	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTTTTCTAATTGTC	4475	False	NA	NA	False	ATTAAA	-22	NA	109030464	109075773	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_109030704_109043527_109043655_109056798_109056887_109062309_109062422_109064162_109064322_109065813_109065961_109066663_109066772_109068532_109068701_109070734_109070886_109073641
transcript_87969.known	chr3	-	3051	2	FSM	ENSMUSG00000049300.12	ENSMUST00000190378.2	3051	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGTAACCTGGTCTAT	NA	False	NA	-8	True	AATAAA	-18	NA	110158309	110153427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_110155172_110157002
transcript_87970.known	chr3	-	2450	1	FSM	ENSMUSG00000049300.12	ENSMUST00000106567.2	2450	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGCTGGGGCTCTATT	NA	False	NA	-12	True	ATTAAA	-19	NA	110158314	110155864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_110155900_110158300
transcript_87971.known	chr3	-	2616	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106535.2	2616	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	33.0729712691713	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAATTTAAATACA	NA	False	NA	NA	False	NA	NA	NA	113423798	113399984	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_113400949_113401988_113402058_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
transcript_87973.known	chr3	-	1839	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_8	14.9497457489813	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTCTAATTTTTCATTA	NA	False	NA	-1	True	AATAAA	-16	NA	113423798	113399112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
transcript_87977.nic	chr3	-	953	8	ISM	ENSMUSG00000027981.15	ENSMUST00000106535.2	2616	15	-19	10466	-19	0	5prime_fragment	FALSE	canonical	3	86	junction_1	15.4629247174112	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGCGAAAAATAAAGG	NA	False	NA	NA	False	AAAACA	-21	NA	113423817	113410450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
transcript_87979.known	chr3	-	1532	2	FSM	ENSMUSG00000027981.15	ENSMUST00000127068.2	1532	2	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	113423728	113420726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_113422042_113423511
transcript_87980.known	chr3	-	3046	2	FSM	ENSMUSG00000045092.9	ENSMUST00000055676.4	3046	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTTGTGAAGAAAACTT	NA	False	NA	1	True	AATAAA	-18	NA	115508721	115504081	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_115506764_115508357
transcript_87985.nnic	chr3	+	1293	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.812220405626	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATATTGTTTTATAATC	7718	False	NA	5	True	AATAAA	-15	NA	115681791	115722734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722480
transcript_87988.known	chr3	+	1576	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGCAGTCAGCGACTGAG	7758	False	NA	NA	False	TTTAAA	-6	NA	115681831	115722981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
transcript_87991.known	chr3	+	1558	8	FSM	ENSMUSG00000033554.18	ENSMUST00000189799.7	1558	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	96.1692810217738	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7412	False	NA	8	True	AATAAA	-18	NA	115681485	115722737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_115681807_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
transcript_87993.known	chr3	+	1836	4	FSM	ENSMUSG00000033554.18	ENSMUST00000106505.8	1836	4	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_1	9.41629792788369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAACAACCCTT	7748	False	NA	NA	False	NA	NA	NA	115681821	115694791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343
transcript_87996.known	chr3	-	739	3	FSM	ENSMUSG00000054426.12	ENSMUST00000188260.7	739	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	22	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	944	False	NA	-5	True	NA	NA	NA	115681743	115675229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_115675488_115679862_115680025_115681424
transcript_87997.nnic	chr3	-	820	3	NNC	ENSMUSG00000054426.12	novel	739	3	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	24.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	906	False	NA	-5	True	NA	NA	NA	115681781	115675229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_115675488_115679862_115680068_115681424
transcript_87999.known	chr3	-	433	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185424.2	433	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTGCCTTGGCTATGG	1086	False	NA	-7	True	NA	NA	NA	115681601	115675231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_115675488_115681424
transcript_88.known	SIRV2	+	523	1	FSM	SIRV2B	SIRV205	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	460	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCGTCTACCGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	1108	1631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV2_+_1100_1600
transcript_8800.known	chr10	-	4048	2	FSM	ENSMUSG00000069662.6	ENSMUST00000092584.6	4048	2	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAATCGTGTTATTAAGT	NA	False	NA	-3	True	AATAAA	-16	NA	37014916	37009370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_37012932_37014429
transcript_88002.known	chr3	-	9020	11	FSM	ENSMUSG00000054414.5	ENSMUST00000067485.4	9020	11	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_7	12.5940462123973	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGTCATGACTCTTG	108	False	NA	NA	False	ATTAAA	-17	NA	115801055	115732621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_115740361_115747700_115747851_115750519_115750611_115772292_115772429_115775410_115775462_115778473_115778624_115783660_115783788_115784375_115784464_115786574_115786689_115800482_115800585_115800783
transcript_8801.known	chr10	+	337	3	FSM	ENSMUSG00000046463.6	ENSMUST00000217338.2	337	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	7.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAGAAGACGAGCAAGGA	NA	False	NA	NA	False	NA	NA	NA	37017084	37026592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_37017182_37024872_37025003_37026482
transcript_88014.known	chr3	+	3000	5	FSM	ENSMUSG00000027963.15	ENSMUST00000029575.12	3000	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	7.08872343937891	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGTGCTCTGGTGACGTG	19	False	NA	23	True	AATAAA	-34	NA	115801110	115822666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_115801532_115804270_115804346_115817655_115818084_115818973_115819045_115820661
transcript_88021.known	chr3	+	2840	5	FSM	ENSMUSG00000027963.15	ENSMUST00000106502.2	2840	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	20.597329924046	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTCATCCACTGTCAAA	52	False	NA	-34	True	AATACA	-45	NA	115801868	115822609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_115802187_115804270_115804346_115817655_115818084_115818973_115819045_115820661
transcript_88028.known	chr3	+	2887	4	FSM	ENSMUSG00000027963.15	ENSMUST00000106501.8	2887	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.9786236911983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCACTGTGTTAATAACT	10	False	NA	1	True	AATAAA	-12	NA	115801126	115822644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_115801532_115817655_115818084_115818973_115819045_115820661
transcript_88029.known	chr3	-	4485	16	FSM	ENSMUSG00000033502.16	ENSMUST00000090464.7	4485	16	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_7	3.61232458243842	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGGGCATTCATTAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	116217681	116066201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116068358_116087374_116087736_116088399_116088523_116090779_116090828_116092085_116092199_116101788_116101949_116115730_116115870_116122127_116122359_116126443_116126532_116142102_116142166_116144854_116144922_116160275_116160356_116186470_116186564_116198191_116198268_116216215_116216307_116217085
transcript_88031.known	chr3	-	863	4	FSM	ENSMUSG00000033502.16	ENSMUST00000136994.2	863	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	7.25718035235908	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGAGTTAATGACCAAGT	NA	False	NA	NA	False	ATTAAA	-10	NA	116217544	116197756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116197994_116198191_116198268_116216215_116216307_116217085
transcript_88033.nic	chr3	-	1474	11	NIC	ENSMUSG00000000339.15	novel	1594	11	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_8	93.6707531730155	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301759	116282611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298096_116300483_116300628_116301399_116301501_116301593
transcript_88034.known	chr3	-	1594	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301857	116282611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
transcript_88039.nnic	chr3	-	1491	10	NIC	ENSMUSG00000000339.15	novel	1594	11	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	97.8116103083428	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301859	116282611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_116282988_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
transcript_8804.known	chr10	-	721	5	FSM	ENSMUSG00000051736.9	ENSMUST00000124941.8	721	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	11.3880419739304	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGGTGATGACAATGGTT	NA	False	NA	-17	True	AATAAA	-14	NA	39009896	38994814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_38995031_38996253_38996393_38998172_38998329_39008242_39008375_39009818
transcript_88043.known	chr3	-	876	9	FSM	ENSMUSG00000000339.15	ENSMUST00000140677.8	876	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	99.4029048871309	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGCTGAAATGCTATTA	NA	False	NA	NA	False	NA	NA	NA	116301673	116287799	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300643_116301399_116301501_116301593
transcript_88044.known	chr3	+	3301	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTATGCCTTCATAGTA	NA	False	NA	10	True	AATAAA	-19	NA	116306718	116343630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
transcript_88057.nic	chr3	+	2519	9	NIC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	-7	-540	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	69.7387983836831	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGTATTTTGAAATCTAG	NA	False	NA	104	True	NA	NA	NA	116306760	116343090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_116306841_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
transcript_88062.known	chr3	+	2404	17	FSM	ENSMUSG00000027959.15	ENSMUST00000198311.5	2404	17	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_15	13.4290671213603	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAATCTGCCACCTGAGA	NA	False	NA	NA	False	NA	NA	NA	116388656	116422796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031_116415158_116420721_116420817_116422166_116422262_116422356
transcript_88066.known	chr3	+	1894	14	FSM	ENSMUSG00000027959.15	ENSMUST00000198386.5	1894	14	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	10.1538461538462	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGATGTCTGCAGCATCT	NA	False	NA	NA	False	TATAAA	-22	NA	116388630	116415251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031
transcript_88069.nic	chr3	+	1507	12	ISM	ENSMUSG00000027959.15	ENSMUST00000198386.5	1894	14	3	2300	3	-797	5prime_fragment	FALSE	canonical	3	39	junction_7	10.7388227497052	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAACAACTTTTGAAAAAT	NA	False	NA	NA	False	AAGAAA	-1	NA	116388633	116412951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899
transcript_88076.known	chr3	-	1616	11	FSM	ENSMUSG00000033439.13	ENSMUST00000184963.8	1616	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	31.2251501197352	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATCTGAGTGTGAGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	116388485	116374742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116375260_116376142_116376374_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
transcript_88077.known	chr3	-	3402	12	FSM	ENSMUSG00000033439.13	ENSMUST00000041524.11	3402	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	35.6275499304904	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCTGAGTGTGAGGCTT	NA	False	NA	NA	False	AATAAA	-23	NA	116408236	116374741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287_116389243_116407407
transcript_88078.known	chr3	-	1723	11	FSM	ENSMUSG00000033439.13	ENSMUST00000183638.8	1723	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	35.5437758264369	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAATCTGAGTGTGAGGC	NA	False	NA	NA	False	AATAAA	-21	NA	116388509	116374743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382174_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
transcript_8808.known	chr10	+	2929	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCTCTGTGTTAAGTCC	NA	False	NA	NA	False	AATATA	-18	NA	39010018	39027054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
transcript_88090.known	chr3	-	459	7	FSM	ENSMUSG00000033439.13	ENSMUST00000134761.2	459	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	53.1238071761512	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCCATCCAGCATTGCAT	NA	False	NA	NA	False	NA	NA	NA	116388317	116383216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116383247_116383382_116383453_116383878_116383942_116384053_116384206_116385841_116385909_116386112_116386160_116388287
transcript_88095.nic	chr3	+	668	5	ISM	ENSMUSG00000027959.15	ENSMUST00000198386.5	1894	14	-54	14109	-54	2252	5prime_fragment	FALSE	canonical	3	55	junction_4	8.4372685153431	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAGTTTTTAAATTTAAG	NA	False	NA	NA	False	AATAAA	-34	NA	116388576	116401142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971
transcript_88099.known	chr3	-	880	1	FSM	ENSMUSG00000033439.13	ENSMUST00000198454.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTACTAACCTGCTATACA	NA	False	NA	NA	False	AAAAAG	-7	NA	116388487	116387607	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116387600_116388500
transcript_88102.known	chr3	-	2782	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	602	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTGATCTGTGAGTCCC	NA	False	NA	-1	True	AATAAA	-36	NA	116456326	116424812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
transcript_88115.known	chr3	-	5725	8	FSM	ENSMUSG00000027957.14	ENSMUST00000029569.9	5725	8	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	23.3779941878019	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTCAGTAGTTCCTCAGG	1796	False	NA	-9	True	AATAAA	-20	NA	116506299	116463118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116467368_116468819_116468954_116471511_116471631_116474753_116474926_116480710_116480834_116480919_116481075_116488078_116488284_116505731
transcript_88120.known	chr3	-	9625	34	FSM	ENSMUSG00000033400.15	ENSMUST00000040603.14	9625	34	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_28	10.2172903022423	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTATTATTCTATTGTAC	NA	False	NA	NA	False	AATAAA	-10	NA	116601815	116533647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_116538585_116540028_116540163_116540265_116540354_116544046_116544145_116545633_116545846_116546899_116547013_116548521_116548658_116551887_116552000_116552339_116552566_116562434_116562538_116564988_116565165_116566035_116566170_116566412_116566550_116570177_116570309_116572267_116572403_116572703_116572817_116572904_116573030_116574374_116574526_116574640_116574797_116574891_116574994_116575236_116575401_116576168_116576293_116578101_116578290_116578708_116578849_116580178_116580277_116580367_116580471_116580878_116581003_116581919_116582032_116582174_116582357_116584654_116584859_116585666_116585834_116587260_116587472_116600916_116601067_116601676
transcript_88125.known	chr3	+	2377	17	FSM	ENSMUSG00000033386.11	ENSMUST00000040260.11	2377	17	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	82.2666918852946	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116653112	116697127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_116653284_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
transcript_8813.known	chr10	+	4192	11	FSM	ENSMUSG00000019845.9	ENSMUST00000213459.2	4192	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	48.3434587095297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	39010063	39028538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39021568_39021710_39023307_39023449_39023758_39023934_39025454
transcript_88134.nnic	chr3	+	2719	16	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	1541	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	74.6183176795975	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116654756	116697127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_116655359_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
transcript_88136.known	chr3	-	2021	9	FSM	ENSMUSG00000028007.14	ENSMUST00000029639.12	2021	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4.05431868505671	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAGGTTTAAGTTATTA	NA	False	NA	NA	False	AATAAA	-32	NA	117662585	117575295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_117576026_117594489_117594643_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
transcript_88138.known	chr3	-	1588	8	FSM	ENSMUSG00000028007.14	ENSMUST00000169812.8	1588	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6.9045976991969	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGATGTGTTCATTT	NA	False	NA	NA	False	AATAAA	-20	NA	117662529	117575519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_117576026_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
transcript_88140.known	chr3	+	346	1	FSM	ENSMUSG00000106037.2	ENSMUST00000196114.2	346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGACAACTGAATAAATCG	NA	False	NA	-8	True	NA	NA	NA	119503164	119503510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_119503200_119503500
transcript_88142.known	chr3	-	3777	14	FSM	ENSMUSG00000028134.12	ENSMUST00000200097.5	3777	14	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	15.6821233920295	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCTGTTCCTTTTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	119577453	119512390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
transcript_88143.known	chr3	-	3364	14	FSM	ENSMUSG00000028134.12	ENSMUST00000029780.12	3364	14	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	15.6821233920295	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCTGTTCCTTTTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	119577037	119512390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_119514110_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
transcript_88147.known	chr3	-	1598	13	FSM	ENSMUSG00000028134.12	ENSMUST00000197833.5	1598	13	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	23.7888571020598	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAGATGGCGGGCAGAT	NA	False	NA	NA	False	NA	NA	NA	119576883	119513968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_119514110_119514255_119514334_119514437_119514655_119517742_119517836_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
transcript_88150.known	chr3	-	1484	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	13.1244047484067	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTGTGTCTGAGAAGGA	NA	False	NA	NA	False	ATTAAA	-23	NA	120965344	120949046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
transcript_88153.known	chr3	-	1145	4	FSM	ENSMUSG00000028133.18	ENSMUST00000039761.12	1145	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	14.8548533034381	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAATGATTTCTTAAAG	NA	False	NA	-22	True	NA	NA	NA	120965343	120949513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_120949952_120950049_120950166_120952416_120952905_120965240
transcript_88159.known	chr3	+	2037	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCCAGGTATTTTAAGCA	NA	False	NA	NA	False	NA	NA	NA	121085421	121156743	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
transcript_88162.nnic	chr3	+	871	4	NNC	ENSMUSG00000039887.12	novel	2037	4	NA	NA	-41	313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.1072795307661	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGGTTCTCTTGGGAC	NA	False	NA	25	True	AATAAA	-26	NA	121085380	121155669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_121085500_121092252_121092408_121113728_121113861_121155204
transcript_8817.known	chr10	+	3528	14	FSM	ENSMUSG00000019843.15	ENSMUST00000099967.10	3528	14	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_9	15.9414609592343	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAATTTTTGTTTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	39245793	39441368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_39246187_39271000_39271041_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405432_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
transcript_88174.known	chr3	+	2049	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	0	0	0	0	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	6284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTGGTTATTTTCT	NA	False	NA	27	True	AATAAA	-27	NA	121220145	121251856	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
transcript_88187.known	chr3	+	2214	6	FSM	ENSMUSG00000053931.12	ENSMUST00000199188.5	2214	6	0	0	0	0	multi-exon	FALSE	canonical	3	4363	junction_2	396.918329130817	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	19	True	AATAAA	-19	NA	121220193	121251848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_121220478_121243597_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
transcript_88197.known	chr3	-	2620	15	FSM	ENSMUSG00000039865.9	ENSMUST00000039197.9	2620	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	3.70672307009404	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTTTGTTCATCTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	121326053	121253176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_121253726_121254750_121254988_121257062_121257201_121279910_121279998_121283846_121284004_121291367_121291534_121303022_121303210_121303840_121303966_121305970_121306061_121307305_121307467_121318475_121318570_121319315_121319453_121320712_121320856_121325315_121325421_121325809
transcript_88199.known	chr3	+	1872	6	FSM	ENSMUSG00000028128.14	ENSMUST00000029771.13	1872	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	13.6176356244394	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCATTTATATCTTCCACT	NA	False	NA	NA	False	AATAAA	-22	NA	121517185	121528697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_121517452_121518625_121518732_121522985_121523204_121525172_121525352_121526029_121526190_121527754
transcript_8820.known	chr10	+	3562	14	FSM	ENSMUSG00000019843.15	ENSMUST00000063091.13	3562	14	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_8	31.8009712925239	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTATTTGTGTACA	NA	False	NA	NA	False	ATTAAA	-30	NA	39245759	39441377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_39246187_39271000_39271041_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405914_39406071_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
transcript_88200.known	chr3	-	3489	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGTGCCTGACCTTTT	7131	False	NA	-1	True	ATTAAA	-22	NA	121608951	121552555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
transcript_88204.known	chr3	-	638	2	FSM	ENSMUSG00000028127.11	ENSMUST00000199593.2	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAGAAAAGAAAAG	7236	False	NA	NA	False	NA	NA	NA	121608846	121589685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_121590135_121608657
transcript_88209.known	chr3	+	3311	12	FSM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	0	0	0	0	multi-exon	TRUE	canonical	3	116	junction_1	21.0877740616698	531	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTCTTTATTATTGA	NA	False	NA	NA	False	AATATA	-22	NA	122213426	122323840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_122213833_122220093_122220404_122248701_122248742_122298575_122298705_122301774_122302221_122304867_122304972_122305999_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
transcript_88221.known	chr3	+	5589	7	FSM	ENSMUSG00000028124.16	ENSMUST00000029769.14	5589	7	0	0	0	0	multi-exon	FALSE	canonical	3	413	junction_2	51.1826793619352	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGATTTGTAAATATTTT	NA	False	NA	NA	False	AATAAA	-17	NA	122039205	122064381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_122039761_122049193_122049260_122052855_122052941_122055516_122055577_122056248_122056452_122058442_122058558_122059876
transcript_88226.known	chr3	+	2429	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	0	0	0	0	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGCCTCTTGGAATAA	NA	False	NA	23	True	AATAAA	-19	NA	122068036	122078920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
transcript_88228.known	chr3	+	877	6	FSM	ENSMUSG00000028124.16	ENSMUST00000176445.8	877	6	0	0	0	0	multi-exon	FALSE	canonical	3	413	junction_2	53.2218000447185	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGAACGCAACCATTT	NA	False	NA	NA	False	AAAACA	-27	NA	122039729	122058874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_122039761_122049193_122049260_122052855_122052941_122055516_122055577_122056248_122056452_122058442
transcript_88232.nic	chr3	+	2188	5	ISM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	-115	2809	-115	-2636	5prime_fragment	FALSE	canonical	3	1211	junction_2	84.6740072277201	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGAGATGGTTTCCCTA	NA	False	NA	NA	False	AAGAAA	-3	NA	122067921	122076111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977
transcript_88234.known	chr3	+	762	3	FSM	ENSMUSG00000028124.16	ENSMUST00000137540.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	220.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGAGGATGAGAACTTC	NA	False	NA	NA	False	NA	NA	NA	122039360	122050620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_122039761_122049193_122049260_122050324
transcript_88237.nic	chr3	+	1869	3	ISM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	-30	6391	-30	-733	5prime_fragment	FALSE	canonical	3	1211	junction_2	59.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGTAAGCTATATGAACT	NA	False	NA	NA	False	AAAAAG	-6	NA	122068006	122072529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_122068128_122068846_122070460_122072394
transcript_88239.nic	chr3	+	692	2	ISM	ENSMUSG00000039756.13	ENSMUST00000197215.2	911	3	-41	423	-11	-423	intron_retention	FALSE	canonical	3	1330	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATTGTGGGTATGTCTG	NA	False	NA	NA	False	AATAAA	-3	NA	122068025	122069436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_122068128_122068846
transcript_8824.nic	chr10	+	2514	13	NIC	ENSMUSG00000019843.15	novel	3528	14	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_2	33.9276190342519	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTATTTTCCAAAAGTGG	NA	False	NA	NA	False	ACTAAA	-10	NA	39245720	39440351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_39246187_39271000_39271041_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405432_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
transcript_88240.nic	chr3	+	1110	2	ISM	ENSMUSG00000039756.13	ENSMUST00000197215.2	911	3	-269	233	-239	-233	intron_retention	FALSE	canonical	3	1330	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAAAACGAGCCAATGT	NA	False	NA	NA	False	NA	NA	NA	122067797	122069626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_122068128_122068846
transcript_88241.nic	chr3	+	980	2	ISM	ENSMUSG00000039756.13	ENSMUST00000197215.2	911	3	-43	137	-13	-137	intron_retention	FALSE	canonical	3	1330	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATTAATGAGAAAGATTC	NA	False	NA	NA	False	NA	NA	NA	122068023	122069722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_122068128_122068846
transcript_88242.nic	chr3	+	1736	2	ISM	ENSMUSG00000039756.13	ENSMUST00000197215.2	911	3	-175	-487	-145	487	intron_retention	FALSE	canonical	3	1330	junction_1	0	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAGAGGAGAAAGAGGA	NA	False	NA	26	True	AAGAAA	-3	NA	122067891	122070346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_122068128_122068846
transcript_88243.nic	chr3	-	4094	15	NIC	ENSMUSG00000039735.17	novel	5357	15	NA	NA	-90	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	12.9545910229319	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTACTTATCTTTTAC	NA	False	NA	1	True	AATAAA	-24	NA	122413454	122332367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
transcript_88246.nic	chr3	-	2514	15	NIC	ENSMUSG00000039735.17	novel	5357	15	NA	NA	-34	-1518	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	12.9545910229319	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCTGCTCTAGCCTGCA	NA	False	NA	NA	False	AAAAAG	-5	NA	122413398	122333891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
transcript_88247.known	chr3	-	5357	15	FSM	ENSMUSG00000039735.17	ENSMUST00000239148.2	5357	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	30.347981810987	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAAGATGTGTACTTATC	NA	False	NA	-5	True	AATAAA	-18	NA	122413364	122332373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122350060_122350220_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
transcript_8825.nic	chr10	+	2582	13	NIC	ENSMUSG00000019843.15	novel	3528	14	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_2	33.9276190342519	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGGACAGGTGTTTGG	NA	False	NA	NA	False	AATAAA	-27	NA	39245720	39440419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_39246187_39271000_39271041_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405432_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
transcript_88250.known	chr3	-	5198	14	FSM	ENSMUSG00000039735.17	ENSMUST00000162409.8	5198	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_7	9.36820759854666	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAAGATGTGTACTTATC	NA	False	NA	-5	True	AATAAA	-18	NA	122413364	122332373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
transcript_88257.nic	chr3	-	2648	6	ISM	ENSMUSG00000039735.17	ENSMUST00000239148.2	5357	15	-90	23224	-90	-4040	5prime_fragment	FALSE	canonical	3	69	junction_4	10.0915806492343	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTGCTGTGTAACTCAT	NA	False	NA	NA	False	AAGAAA	-12	NA	122413454	122355597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
transcript_88260.nic	chr3	-	587	5	ISM	ENSMUSG00000039735.17	ENSMUST00000239148.2	5357	15	-20	30028	-20	-10844	5prime_fragment	FALSE	canonical	3	69	junction_3	10.8714074525794	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTAACAGTGTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	122413384	122362401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
transcript_88263.nic	chr3	-	592	4	ISM	ENSMUSG00000039735.17	ENSMUST00000239148.2	5357	15	-90	30872	-90	-11688	5prime_fragment	FALSE	canonical	3	69	junction_2	11.9536140513607	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAATATTTATGATTTTC	NA	False	NA	NA	False	AAGAAA	-3	NA	122413454	122363245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_122363392_122364539_122364594_122383776_122383893_122413178
transcript_88265.known	chr3	+	6939	21	FSM	ENSMUSG00000053965.11	ENSMUST00000066728.10	6939	21	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	2.13541565040626	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGGTGTGATCATTA	NA	False	NA	NA	False	AATAAA	-16	NA	122522595	122653023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_122523017_122541537_122542127_122554526_122554617_122568201_122568274_122569904_122569995_122572583_122572722_122575215_122575284_122587908_122588018_122588882_122588971_122596680_122596857_122598198_122598259_122611569_122611717_122616704_122616831_122618563_122618659_122629201_122629290_122633190_122633292_122634619_122634698_122636693_122636758_122645298_122645374_122646186_122646271_122648843
transcript_88268.known	chr3	+	1160	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	0	0	0	0	multi-exon	FALSE	canonical	3	1657	junction_1	0	556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTTCACACTGTGTCA	NA	False	NA	22	True	NA	NA	NA	122717851	122719833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_122718306_122719127
transcript_88269.known	chr3	-	6185	16	FSM	ENSMUSG00000039701.12	ENSMUST00000090379.7	6185	16	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	6.61177400971597	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGAGTAGGATGTGATT	NA	False	NA	NA	False	AATAAA	-16	NA	122778159	122725141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_122728245_122729636_122729734_122741009_122741087_122742772_122743506_122744819_122744964_122746205_122746356_122746828_122746992_122750347_122750498_122751233_122751381_122752680_122752787_122754803_122754887_122754967_122755082_122756532_122756668_122757903_122757997_122762237_122762899_122777930
transcript_8827.known	chr10	+	2495	13	FSM	ENSMUSG00000019843.15	ENSMUST00000126486.8	2495	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	42.9213589667843	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGGACAGGTGTTTGG	NA	False	NA	NA	False	AATAAA	-27	NA	39245798	39440419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_39246187_39271000_39271041_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405914_39406071_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
transcript_88286.nnic	chr3	+	3940	23	NNC	ENSMUSG00000039234.12	novel	3649	20	NA	NA	-2673	0	at_least_one_novel_splicesite	TRUE	canonical	3	15	junction_1	16.1403964230813	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTACTGTGTTTTA	NA	False	NA	13	True	AATAAA	-13	NA	123058430	123159285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_123058555_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
transcript_88288.known	chr3	+	3903	23	FSM	ENSMUSG00000039234.12	ENSMUST00000047923.12	3903	23	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_9	11.2449253935915	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTACTGTGTTTTATGTCT	NA	False	NA	18	True	AATAAA	-18	NA	123061103	123159290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_123061186_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
transcript_88291.known	chr3	-	2741	11	FSM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	25.8534330408942	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179757	123161945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
transcript_88296.nnic	chr3	-	2430	10	NIC	ENSMUSG00000028114.17	novel	2741	11	NA	NA	-23	0	combination_of_known_splicesites	TRUE	canonical	3	34	junction_1	76.5041756304118	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179657	123161945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_123163340_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
transcript_883.known	chr1	+	1024	4	FSM	ENSMUSG00000037509.22	ENSMUST00000159059.2	1024	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	6.64997911442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTACTGAAGCAAGTCGAG	NA	False	NA	NA	False	NA	NA	NA	34840802	34845779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_34841083_34843994_34844175_34845036_34845217_34845395
transcript_88301.known	chr3	+	2602	11	FSM	ENSMUSG00000027978.10	ENSMUST00000029603.10	2602	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.458257569495584	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGCCTGCGATTCCTT	NA	False	NA	NA	False	AGTAAA	-43	NA	123240561	123300246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_123241286_123258385_123258537_123271625_123271805_123273213_123273356_123276322_123276520_123279071_123279214_123280605_123280812_123283204_123283284_123285150_123285274_123298926_123299208_123299868
transcript_88302.known	chr3	-	448	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	15.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCCTGTTTCTGGA	NA	False	NA	48	True	AATAAA	-21	NA	123302053	123301200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_123301310_123301465_123301512_123301760
transcript_88303.known	chr3	-	776	1	FSM	ENSMUSG00000104960.2	ENSMUST00000198509.2	776	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACTGTGTCCTGTTTCT	NA	False	NA	45	True	AATAAA	-18	NA	123301979	123301203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_123301200_123302000
transcript_88304.known	chr3	-	528	2	FSM	ENSMUSG00000104960.2	ENSMUST00000199645.2	528	2	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGACTGTGTCCTGTTT	NA	False	NA	43	True	AATAAA	-16	NA	123301982	123301205	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_123301512_123301760
transcript_88306.known	chr3	-	3740	6	FSM	ENSMUSG00000032854.13	ENSMUST00000057944.12	3740	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	3.44093010681705	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTCTCATTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	125732268	125658919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_125661229_125665233_125665454_125667797_125667875_125669137_125669281_125708286_125709111_125732101
transcript_88308.known	chr3	+	5524	19	FSM	ENSMUSG00000053819.17	ENSMUST00000199300.5	5524	19	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_9	3.34119443416775	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTTTTGTGGTCTCC	NA	False	NA	NA	False	AATAAA	-22	NA	126390655	126639975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_126391154_126392714_126392810_126478308_126478369_126523055_126523111_126561162_126561229_126564433_126564507_126574008_126574112_126577603_126577688_126589012_126589108_126590486_126590610_126591350_126591435_126591886_126591930_126595372_126595411_126604287_126604337_126628222_126628299_126631911_126632007_126633785_126634015_126635133_126635223_126636406
transcript_88309.known	chr3	+	2722	18	FSM	ENSMUSG00000053819.17	ENSMUST00000106400.9	2722	18	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_9	3.31714639526393	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAGTCAAGGTCTT	NA	False	NA	NA	False	AAAAAG	-28	NA	126390745	126637352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_126391154_126392714_126392810_126478308_126478369_126523055_126523111_126561162_126561229_126564433_126564507_126574008_126574112_126577603_126577688_126589012_126589108_126590486_126590610_126591350_126591435_126591886_126591930_126595372_126595411_126604287_126604337_126628222_126628299_126631911_126632007_126633785_126634015_126636406
transcript_88311.known	chr3	+	1960	17	FSM	ENSMUSG00000053819.17	ENSMUST00000169051.8	1960	17	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	3.24037034920393	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCTCATCTCAGTATCC	NA	False	NA	NA	False	NA	NA	NA	126390658	126634111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_126391154_126392714_126392810_126478308_126478369_126523055_126523111_126561162_126561229_126564433_126564507_126574008_126574112_126577603_126577688_126589012_126589108_126590486_126590610_126591350_126591435_126591886_126591930_126595372_126595411_126604287_126604337_126628222_126628299_126631911_126632007_126633785
transcript_88312.known	chr3	+	992	3	FSM	ENSMUSG00000053819.17	ENSMUST00000131156.8	992	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	AATATA	-33	NA	126390989	126479041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_126391154_126392714_126392810_126478308
transcript_88315.known	chr3	-	2121	13	FSM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_6	145.639680948108	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	-1	True	AATAAA	-17	NA	127346998	127330362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
transcript_88326.nic	chr3	-	806	6	ISM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	-19	9771	-19	-14	5prime_fragment	FALSE	canonical	3	772	junction_1	64.3011663968858	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAGCAGGTGAGTGCTTA	NA	False	NA	NA	False	AAAACA	-19	NA	127347017	127340133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
transcript_88330.known	chr3	-	411	3	FSM	ENSMUSG00000027968.12	ENSMUST00000197668.2	411	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	395	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGCTAATAGCCAGAGCA	NA	False	NA	NA	False	AATGAA	-18	NA	127346996	127340782	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_127340840_127341010_127341196_127346827
transcript_88332.known	chr3	+	7046	26	FSM	ENSMUSG00000051278.13	ENSMUST00000043108.9	7046	26	0	0	0	0	multi-exon	TRUE	canonical	1	17	junction_9	21.9453867589523	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTCTTATGTGGAAAAAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	127347137	127411670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123_127356868_127361276_127361351_127366788_127366975_127375094_127375219_127377232_127377820_127378304_127378444_127379667_127379853_127381589_127381787_127383617_127383758_127389527_127389672_127392349_127392465_127394628_127394889_127396046_127396207_127400017_127400096_127402133_127402282_127405432_127405561_127406991_127407116_127408775_127408953_127409085_127409221_127409907_127410170_127410315
transcript_88343.known	chr3	+	3804	6	FSM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	13.6	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTTATGTATGTGCAT	NA	False	NA	NA	False	NA	NA	NA	127347281	127358487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123
transcript_88353.known	chr3	-	2662	10	FSM	ENSMUSG00000074238.7	ENSMUST00000051737.8	2662	10	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_8	26.3288791357173	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATTTGCATCATGGCTT	NA	False	NA	-16	True	AATAAA	-16	NA	127631160	127600660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558_127610656_127614408_127614435_127616232_127616260_127616913_127616963_127630797
transcript_88356.known	chr3	-	2580	9	FSM	ENSMUSG00000074238.7	ENSMUST00000200409.5	2580	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	148.476376487979	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATCATGGCTTCATAA	NA	False	NA	-11	True	AATAAA	-21	NA	127631172	127600655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127610558_127610656_127614408_127614435_127616232_127616260_127616913_127616963_127630797
transcript_88360.known	chr3	-	198	4	FSM	ENSMUSG00000074238.7	ENSMUST00000200238.5	198	4	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_2	9.46337971105226	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	127630880	127614395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_127614435_127616232_127616260_127616913_127616963_127630797
transcript_88361.nic	chr3	-	2308	3	NIC	ENSMUSG00000074238.7	novel	198	4	NA	NA	-1	19	intron_retention	FALSE	canonical	3	416	junction_1	10.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAACAACAACAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127631173	127614376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_127616260_127616913_127616963_127630797
transcript_88362.known	chr3	-	2234	2	FSM	ENSMUSG00000050549.9	ENSMUST00000199273.2	2234	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGTTCTACCCGTGCT	2574	False	NA	NA	False	AATAAA	-23	NA	127689973	127662706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_127664650_127689682
transcript_88365.known	chr3	-	1320	1	FSM	ENSMUSG00000074236.4	ENSMUST00000098624.4	1320	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCTTGTAGAGGCAATGA	NA	False	NA	NA	False	NA	NA	NA	128748747	128747427	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_128747400_128748700
transcript_88366.known	chr3	+	2271	3	FSM	ENSMUSG00000028023.17	ENSMUST00000042587.12	2271	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTCTGGATTCTTTC	NA	False	NA	NA	False	AGTAAA	-14	NA	129007620	129013237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_129008431_129009287_129009494_129011982
transcript_88369.known	chr3	+	5951	5	FSM	ENSMUSG00000041220.11	ENSMUST00000071402.7	5951	5	0	0	0	0	multi-exon	FALSE	canonical	1	87	junction_1	129.619635858152	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTCTAGTTCTTTGTTG	NA	False	NA	17	True	AATAAA	-25	NA	129326034	129432144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
transcript_88375.known	chr3	+	797	5	FSM	ENSMUSG00000041220.11	ENSMUST00000197235.5	797	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	197.251584277541	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTTTGAGGCCTACATC	NA	False	NA	NA	False	NA	NA	NA	129326375	129427086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_129326418_129342476_129342570_129398689_129398822_129421931_129422084_129426708
transcript_88376.known	chr3	+	2275	4	FSM	ENSMUSG00000041220.11	ENSMUST00000197070.5	2275	4	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_3	88.9094420682578	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAGAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	129326015	129428601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129426708
transcript_88379.known	chr3	+	2610	4	FSM	ENSMUSG00000041220.11	ENSMUST00000199910.5	2610	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	79.2001683499894	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	129326003	129428620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_129326418_129398689_129398822_129421931_129422084_129426708
transcript_88388.known	chr3	-	4761	24	FSM	ENSMUSG00000028017.8	ENSMUST00000029653.7	4761	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.03438063072785	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGATGACGTTTGTTAT	NA	False	NA	NA	False	AATAAA	-30	NA	129548965	129471213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_129472205_129474747_129474854_129476839_129476961_129479833_129480002_129484419_129484565_129486566_129486690_129490439_129490566_129491366_129491484_129496104_129496231_129499752_129499900_129500857_129501026_129504901_129505126_129506602_129506708_129510278_129510428_129511572_129511710_129512705_129512832_129513879_129514003_129516918_129517042_129518763_129518890_129529450_129529654_129530405_129530631_129531043_129531226_129533490_129533691_129548465
transcript_88394.nnic	chr3	-	1052	7	NNC	ENSMUSG00000028010.17	novel	1271	7	NA	NA	202	0	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_6	620.417444593199	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTACGTTTATTGAACG	NA	False	NA	-8	True	AATAAA	-15	NA	129624807	129618567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624740
transcript_88395.known	chr3	-	1271	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	0	0	0	0	multi-exon	FALSE	canonical	3	868	junction_6	342.204130113397	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTTATTGAACGGAACCTA	NA	False	NA	-1	True	AATAAA	-22	NA	129625045	129618560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
transcript_884.known	chr1	+	6514	14	FSM	ENSMUSG00000037509.22	ENSMUST00000159747.9	6514	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	9.13281358748051	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGCTGGTCAGCTGG	NA	False	NA	10	True	CATAAA	-19	NA	34717268	34851820	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_34717344_34760784_34764241_34771189_34771490_34784398_34784526_34832306_34832444_34843994_34844175_34845036_34845217_34845395_34845576_34846139_34846373_34846722_34846853_34848777_34848910_34849391_34849636_34850166_34850245_34850758
transcript_88404.known	chr3	+	1561	4	FSM	ENSMUSG00000027999.16	ENSMUST00000029629.15	1561	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	3.68178700572909	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGAGTGTTTTCAAGTCT	NA	False	NA	25	True	AATAAA	-25	NA	129672254	129689474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_129672585_129682529_129682607_129683916_129684083_129688486
transcript_88406.known	chr3	+	1456	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGGCACTCTGAGGAT	NA	False	NA	NA	False	AATAAA	-14	NA	129695073	129707752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
transcript_88408.known	chr3	-	5128	24	FSM	ENSMUSG00000001052.16	ENSMUST00000001079.15	5128	24	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_20	16.4228159792433	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGAGTGCAATTTTATT	NA	False	NA	0	True	TATAAA	-22	NA	129854556	129776407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_129777656_129777815_129777920_129781335_129781429_129782544_129782650_129783297_129783436_129783943_129784120_129784979_129785091_129786623_129786798_129787378_129787538_129787917_129788042_129789562_129789770_129789989_129790046_129790329_129790449_129793160_129793274_129795953_129796064_129796588_129796716_129798642_129798746_129801059_129801245_129803310_129803544_129805440_129805522_129814186_129814292_129827479_129827624_129834322_129835097_129854217
transcript_88418.known	chr3	+	567	1	FSM	ENSMUSG00000063328.7	ENSMUST00000076703.7	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAACAAGAAAATATTTCAA	9169	False	NA	NA	False	NA	NA	NA	129862060	129862627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_129862100_129862600
transcript_88419.known	chr3	-	1067	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	0	0	0	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGGACTTTTTGTTGT	NA	False	NA	1	True	AATAAA	-24	NA	130503093	130489560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
transcript_88423.known	chr3	-	704	1	FSM	ENSMUSG00000041084.9	ENSMUST00000197152.2	704	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTAGAGTGTGGACTTT	NA	False	NA	-6	True	AATAAA	-17	NA	130490271	130489567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_130489600_130490300
transcript_88424.known	chr3	-	1720	1	FSM	ENSMUSG00000041084.9	ENSMUST00000197828.2	1720	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130503065	130501345	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_130501300_130503100
transcript_88428.known	chr3	-	624	5	FSM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_4	3512.03875085398	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTTATCTGTGATTTG	NA	False	NA	-11	True	AATAAA	-20	NA	130523986	130520479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523769
transcript_88429.known	chr3	-	495	5	FSM	ENSMUSG00000062006.13	ENSMUST00000196202.5	495	5	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	3611.9776092883	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGCACATTTTTTAAGT	NA	False	NA	-56	True	NA	NA	NA	130523970	130520524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523837
transcript_88430.known	chr3	-	480	5	FSM	ENSMUSG00000062006.13	ENSMUST00000079085.11	480	5	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_4	1283.0290331867	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130524047	130520487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523966
transcript_88434.known	chr3	-	477	4	FSM	ENSMUSG00000062006.13	ENSMUST00000135691.2	477	4	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_3	871.596619237745	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAGTAATAAAAATCAA	NA	False	NA	-44	True	AATAGA	-11	NA	130523991	130520512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522952_130523966
transcript_88437.known	chr3	+	3398	11	FSM	ENSMUSG00000027985.15	ENSMUST00000066849.13	3398	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	10.581115253129	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGTGGTGAACTGAACC	NA	False	NA	NA	False	AATAAA	-17	NA	130904119	131018005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_130998581_130998623_131016724
transcript_88438.known	chr3	+	3357	10	FSM	ENSMUSG00000027985.15	ENSMUST00000106341.9	3357	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_9	8.71779788708135	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGTGGTGAACTGAACC	NA	False	NA	NA	False	AATAAA	-17	NA	130904119	131018005	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_131016724
transcript_88442.known	chr3	-	1789	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	682	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCTGTCTTCTCTGA	NA	False	NA	NA	False	AATAAA	-43	NA	131065750	131027067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
transcript_88457.known	chr3	+	2648	13	FSM	ENSMUSG00000028032.14	ENSMUST00000199878.5	2648	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	13.8531484588242	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGGTTTGTGTGCATA	NA	False	NA	6	True	AATAAA	-17	NA	131270656	131349431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_131270745_131273262_131273440_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
transcript_88458.known	chr3	+	2600	12	FSM	ENSMUSG00000028032.14	ENSMUST00000029666.14	2600	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	6.54292880561694	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTTTGTGTGCATAT	NA	False	NA	7	True	AATAAA	-18	NA	131270528	131349432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_131270745_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
transcript_88461.known	chr3	+	6578	26	FSM	ENSMUSG00000028030.13	ENSMUST00000169172.5	6578	26	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_1	16.5633812973076	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGTAGTCTCGTCTATC	NA	False	NA	83	True	ATTAAA	-12	NA	132389904	132547449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_132390156_132392532_132392754_132400143_132400217_132411273_132411389_132413545_132413620_132421349_132421492_132424380_132424442_132426281_132426344_132428066_132428129_132428428_132428578_132430536_132430676_132431421_132431522_132432417_132432468_132432811_132432942_132437926_132438026_132440107_132440171_132440478_132440606_132441834_132441886_132443265_132443350_132448762_132448849_132456947_132456985_132458268_132458431_132480181_132480358_132507264_132507441_132520950_132521111_132543721
transcript_88468.known	chr3	+	5195	3	FSM	ENSMUSG00000028030.13	ENSMUST00000198147.5	5195	3	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_1	47	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATATTTCTAAATTAC	NA	False	NA	NA	False	NA	NA	NA	132389928	132404890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_132390156_132392532_132392754_132400143
transcript_88470.known	chr3	-	1126	7	FSM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	0	0	0	0	multi-exon	FALSE	canonical	3	854	junction_6	52.4195150259477	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTTGCTCATTTTTTG	NA	False	NA	-16	True	AATAAA	-31	NA	132389645	132366259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
transcript_88474.nic	chr3	-	704	4	ISM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	-240	13507	0	0	5prime_fragment	FALSE	canonical	3	854	junction_3	51.1490197581754	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGAGAAGAAAAGAAGGTGA	NA	False	NA	-27	True	NA	NA	NA	132389885	132379766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_132379891_132380509_132380624_132382765_132382900_132389553
transcript_88475.nic	chr3	-	274	3	ISM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	8	14308	8	0	5prime_fragment	FALSE	canonical	3	854	junction_2	49.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAATAGAAGAGCT	NA	False	NA	7	True	AAGAAA	-30	NA	132389637	132380567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_132380624_132382765_132382900_132389553
transcript_88476.known	chr3	-	4619	12	FSM	ENSMUSG00000040998.19	ENSMUST00000042744.16	4619	12	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	2.17802700922017	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCTCTTCCTTGGTTTT	NA	False	NA	NA	False	AATAAA	-40	NA	132656052	132587505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_132590275_132591516_132591774_132596524_132596624_132597162_132597250_132610418_132610815_132612107_132612231_132612455_132612591_132614103_132614224_132615656_132615777_132623221_132623315_132653807_132653909_132655733
transcript_88477.known	chr3	-	3503	12	FSM	ENSMUSG00000028018.16	ENSMUST00000029651.11	3503	12	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	19.4795930515641	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGACTCCTCTCAGAT	NA	False	NA	-3	True	NA	NA	NA	132797586	132687512	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_132688981_132692145_132692216_132701926_132701958_132704585_132704720_132709424_132709554_132711148_132711194_132711320_132711437_132768326_132768421_132777660_132777913_132787799_132788268_132790336_132790787_132797340
transcript_88482.known	chr3	+	3101	7	FSM	ENSMUSG00000028016.10	ENSMUST00000029650.9	3101	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	13.0213499897497	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTGTAGATGTTTTTG	NA	False	NA	NA	False	AATAAA	-23	NA	132797600	132816749	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_132797738_132802508_132802674_132804170_132804324_132806383_132806569_132808117_132808278_132812699_132812847_132814595
transcript_88487.known	chr3	+	1368	12	FSM	ENSMUSG00000028013.17	ENSMUST00000122334.8	1368	12	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_11	149.418321201731	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTATATTCATAACTTC	NA	False	NA	NA	False	AATAAA	-14	NA	133015882	133083996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083610
transcript_88497.known	chr3	-	9021	12	FSM	ENSMUSG00000040943.13	ENSMUST00000196398.5	9021	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	40.7374175676692	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGATTTTGGCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	133250129	133169599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182397_133185102_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133219789_133219935_133249960
transcript_885.known	chr1	-	5058	8	FSM	ENSMUSG00000037503.13	ENSMUST00000167518.8	5058	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	208.281990952415	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTTCGTGGGAGTGTTT	NA	False	NA	0	True	AATAAA	-25	NA	34882131	34852299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_34856486_34857077_34857208_34858672_34858851_34858947_34859091_34863100_34863137_34867847_34867929_34875813_34875895_34881908
transcript_88501.nic	chr3	-	4168	7	ISM	ENSMUSG00000040943.13	ENSMUST00000196398.5	9021	12	60	15201	-6	16	5prime_fragment	FALSE	canonical	3	102	junction_6	28.6845874217419	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCCAAAAACAAAAACTCAC	NA	False	NA	NA	False	NA	NA	NA	133250069	133184800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133219789_133219935_133249960
transcript_88502.nnic	chr3	-	4011	6	NNC	ENSMUSG00000040943.13	novel	9021	12	NA	NA	-26027	16	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_5	41.9494934415185	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCCAAAAACAAAAACTCAC	NA	False	NA	NA	False	NA	NA	NA	133212470	133184800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133212373
transcript_88504.nic	chr3	-	4039	6	ISM	ENSMUSG00000040943.13	ENSMUST00000196398.5	9021	12	-138	16295	-116	-1078	5prime_fragment	FALSE	canonical	3	102	junction_5	30.970954134479	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGGGTTTAGACCTT	NA	False	NA	NA	False	AATGAA	-2	NA	133250267	133185894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133219789_133219935_133249960
transcript_88508.nic	chr3	-	2736	3	ISM	ENSMUSG00000040943.13	ENSMUST00000196398.5	9021	12	-73	22530	-51	2166	5prime_fragment	FALSE	canonical	3	102	junction_2	6	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTTATTCGAAGATCT	NA	False	NA	NA	False	AATAAA	-3	NA	133250202	133192129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_133194479_133219789_133219935_133249960
transcript_88509.nic	chr3	-	1807	3	ISM	ENSMUSG00000040943.13	ENSMUST00000196398.5	9021	12	-41	23427	-19	1269	5prime_fragment	FALSE	canonical	3	102	junction_2	6	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCAAGAAAAATGTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	133250170	133193026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_133194479_133219789_133219935_133249960
transcript_88510.nic	chr3	-	810	3	ISM	ENSMUSG00000040943.13	ENSMUST00000196398.5	9021	12	-61	24444	-39	252	5prime_fragment	FALSE	canonical	3	102	junction_2	6	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACGGTAAAAGCAGCCGTC	NA	False	NA	NA	False	AAAAAG	-44	NA	133250190	133194043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_133194479_133219789_133219935_133249960
transcript_88511.known	chr3	-	484	2	FSM	ENSMUSG00000040943.13	ENSMUST00000195913.2	484	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTAGATTTCTTTCTGT	NA	False	NA	NA	False	AATAAA	-38	NA	133250047	133244522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_133244920_133249960
transcript_88512.known	chr3	+	7910	46	FSM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_28	46.2867818371455	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATAAGCCTTGTTGTGTG	NA	False	NA	101	True	TTTAAA	-43	NA	134918297	134979372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_134918476_134920864_134920957_134922092_134922183_134922306_134922426_134923013_134923134_134923793_134923876_134924234_134924303_134924384_134924451_134926040_134926093_134927988_134928077_134928930_134929061_134930717_134930838_134934517_134934677_134935808_134935966_134937125_134937215_134938657_134938826_134939488_134939564_134939731_134939852_134940593_134940717_134940826_134940984_134941217_134941373_134943263_134943579_134943687_134943961_134944075_134944232_134945517_134945710_134946708_134946868_134947823_134948115_134948237_134948394_134949360_134949640_134952247_134952407_134952577_134952863_134953098_134953387_134953830_134953990_134954142_134954425_134955416_134955576_134957182_134957444_134961207_134961310_134962237_134962457_134964952_134965148_134965739_134965944_134967279_134967508_134970068_134970182_134971671_134971770_134974700_134974882_134976434_134976722_134978911
transcript_8852.nnic	chr10	-	2073	6	NIC	ENSMUSG00000087177.8	novel	503	5	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	5.31413210223457	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGTTTTTTCAGCATAT	5649	False	NA	1	True	AATAAA	-18	NA	39608011	39497407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_39498724_39508945_39509013_39515559_39515763_39516375_39516508_39557468_39557546_39607733
transcript_88533.known	chr3	+	1172	10	FSM	ENSMUSG00000028167.16	ENSMUST00000120397.8	1172	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	10.4880884817015	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134986981	135010187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_134987130_134991275_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
transcript_88534.known	chr3	+	1059	10	FSM	ENSMUSG00000028167.16	ENSMUST00000029817.11	1059	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	15.3099660916801	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134987021	135010187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_134987130_134991348_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
transcript_88537.nic	chr3	+	2149	12	NIC	ENSMUSG00000050150.17	novel	2248	13	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	36.7153445976695	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCTATGTCTCATGATT	NA	False	NA	4	True	ATTAAA	-16	NA	135053753	135103585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720_135099830_135103356
transcript_88540.nic	chr3	+	1909	11	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	-36	1035	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	33.6964389809962	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053753	135099879	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
transcript_88546.nic	chr3	+	1402	7	ISM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	-65	18658	-36	0	5prime_fragment	FALSE	canonical	3	60	junction_5	29.9146935282461	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAGATTACACAGCTAA	NA	False	NA	-46	True	NA	NA	NA	135053753	135080186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
transcript_88550.known	chr3	+	1196	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160047.8	1196	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	29.6348143611905	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGGTCTTCAAATTTAA	NA	False	NA	14	True	AATAAA	-25	NA	135053806	135063828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217
transcript_88552.known	chr3	+	1407	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160941.8	1407	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	61.0136596727869	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTGTATTCATTG	NA	False	NA	NA	False	NA	NA	NA	135053806	135064067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135053859_135054090_135054535_135060771_135060833_135063217
transcript_88556.known	chr3	+	2248	13	FSM	ENSMUSG00000050150.17	ENSMUST00000078568.12	2248	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	40.4505013016595	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTCTCATGATTTAT	NA	False	NA	7	True	ATTAAA	-19	NA	135053794	135103588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720_135099830_135100604_135100742_135103356
transcript_88557.known	chr3	-	3361	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	1	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTTTTCTTTTTTATGT	NA	False	NA	1	True	ATTAAA	-20	NA	135129686	135112172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_135114652_135116771_135116987_135129019
transcript_8856.known	chr10	-	701	5	FSM	ENSMUSG00000087177.8	ENSMUST00000139356.8	701	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.78564169540279	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAGACTGACATAGAAAAT	5815	False	NA	NA	False	NA	NA	NA	39607845	39498650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_39498724_39515559_39515763_39516271_39516508_39557468_39557546_39607733
transcript_88562.known	chr3	+	787	9	FSM	ENSMUSG00000078578.10	ENSMUST00000198748.5	787	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	1137.45118027105	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTTTGATTTTCTTA	NA	False	NA	7	True	AATAAA	-14	NA	135144514	135171058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135162361_135162406_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_88565.known	chr3	+	1512	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	0	0	0	0	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTTAGCTGCCTGGAT	NA	False	NA	73	True	AATAAA	-13	NA	135143994	135171819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_8857.known	chr10	-	438	4	FSM	ENSMUSG00000087177.8	ENSMUST00000133302.8	438	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	8.65383665716478	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGTGTGGCCTGGAC	5663	False	NA	NA	False	NA	NA	NA	39607997	39498693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_39498724_39508945_39509013_39557468_39557546_39607733
transcript_88570.known	chr3	+	738	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	0	0	0	0	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTACTGTTCCTTTTT	NA	False	NA	-4	True	AATAAA	-3	NA	135144076	135171047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_8858.known	chr10	-	1660	3	FSM	ENSMUSG00000087177.8	ENSMUST00000151921.8	1660	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	10.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGTTTTTTCAGCAT	5658	False	NA	-1	True	AATAAA	-16	NA	39608002	39497409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_39498724_39557468_39557546_39607733
transcript_88581.known	chr3	+	2504	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	0	0	0	0	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATATGTAATTTGGACAT	NA	False	NA	NA	False	AATAAA	-29	NA	135144240	135172711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_88587.known	chr3	+	3833	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	0	0	0	0	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	5	True	ATTAAA	-18	NA	135144325	135173959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_886.known	chr1	-	778	7	FSM	ENSMUSG00000037503.13	ENSMUST00000185469.7	778	7	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_4	165.108802511152	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTTGTGCCTCCAACCA	NA	False	NA	NA	False	NA	NA	NA	34882066	34856432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_34856486_34857077_34857208_34858672_34858851_34858947_34859045_34867847_34867929_34875813_34875895_34881908
transcript_88603.known	chr3	+	666	7	FSM	ENSMUSG00000078578.10	ENSMUST00000198685.5	666	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	961.979339694985	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAGTATGCAATTGTTT	NA	False	NA	NA	False	TATAAA	-13	NA	135144303	135168802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135144460_135145421_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710
transcript_88604.known	chr3	+	2515	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	0	0	0	0	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGATTGTTTGACAAGT	NA	False	NA	11	True	AATAAA	-12	NA	135144897	135172434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_88608.known	chr3	+	3675	17	FSM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	0	0	0	0	multi-exon	TRUE	canonical	3	85	junction_8	25.1755554804656	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTGAACACCATGTC	NA	False	NA	11	True	AATAAA	-19	NA	135191371	135277165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
transcript_88616.known	chr3	+	2534	13	FSM	ENSMUSG00000028164.16	ENSMUST00000140893.8	2534	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_8	21.9291789378647	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAAAAAAAAAAACGGGC	NA	False	NA	NA	False	NA	NA	NA	135191379	135261288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520
transcript_88625.known	chr3	-	4117	25	FSM	ENSMUSG00000028163.18	ENSMUST00000029812.14	4117	25	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_17	10.9790678363673	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTGATCTCTGCAAA	NA	False	NA	0	True	AATAAA	-25	NA	135397307	135290415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969_135300140_135300625_135300828_135307186_135307302_135309470_135309613_135310817_135311007_135312332_135312423_135313912_135314057_135318174_135318314_135319411_135319504_135319667_135319773_135321032_135321192_135324564_135324729_135332355_135332505_135361260_135361360_135364788_135364827_135368675_135368755_135373513_135373554_135375030_135375101_135396883
transcript_88628.nic	chr3	-	1758	7	ISM	ENSMUSG00000028163.18	ENSMUST00000129428.8	2520	13	14024	-227	-18	0	3prime_fragment	FALSE	canonical	3	48	junction_1	5.39804491356722	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTGATCTCTGCAAA	NA	False	NA	0	True	AATAAA	-25	NA	135300220	135290415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969
transcript_88630.known	chr3	+	2194	14	FSM	ENSMUSG00000028161.18	ENSMUST00000056758.9	2194	14	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_13	74.4048576387099	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	TATAAA	-18	NA	136376530	136641540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_136376663_136503486_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136637771_136637802_136640789
transcript_88636.known	chr3	+	4758	13	FSM	ENSMUSG00000028161.18	ENSMUST00000070198.14	4758	13	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_9	19.2887416789057	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGATGTGAGTATTGCTTG	NA	False	NA	13	True	AATAAA	-22	NA	136375884	136643488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_136376663_136503486_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136640789
transcript_8864.known	chr10	+	2867	9	FSM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	7.56534037568701	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTTCTTTTCTTTCTT	NA	False	NA	NA	False	TATAAA	-16	NA	39488929	39531303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_39489343_39501845_39502656_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
transcript_88654.known	chr3	+	2722	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	6.5	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTGGCCTCTTTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	137329432	137334094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137329645_137329892_137330035_137331726
transcript_88657.known	chr3	+	437	5	FSM	ENSMUSG00000037894.14	ENSMUST00000173790.8	437	5	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_4	6198.34562605216	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGATTCCAGTGGACTGTA	NA	False	NA	NA	False	NA	NA	NA	137570373	137572268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571811_137572146
transcript_88658.known	chr3	+	1069	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	0	0	0	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	1192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570247	137572683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
transcript_88660.known	chr3	+	810	5	FSM	ENSMUSG00000037894.14	ENSMUST00000174561.8	810	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	6290.0667921732	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGCTTTAAACTTGCT	NA	False	NA	-3	True	AATAAA	-12	NA	137570333	137572579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571840_137571902_137572146
transcript_88664.known	chr3	+	361	4	FSM	ENSMUSG00000037894.14	ENSMUST00000173666.8	361	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	7077.14110515131	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATACGTGGAGATGAAGAA	NA	False	NA	NA	False	NA	NA	NA	137570351	137571844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137570448_137570893_137570972_137571280_137571395_137571771
transcript_88669.known	chr3	+	9477	8	FSM	ENSMUSG00000074212.8	ENSMUST00000090178.10	9477	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	5.20204041600946	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGGCTTGTCTTCATT	NA	False	NA	NA	False	AATAAA	-20	NA	137573435	137622318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137573818_137591033_137591206_137598568_137598715_137607947_137608134_137609643_137609739_137610505_137610616_137611645_137611819_137614105
transcript_88673.known	chr3	+	1295	7	FSM	ENSMUSG00000091512.6	ENSMUST00000168345.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_3	73.5090697351921	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTGTATAGGCCT	80	False	NA	2	True	AATAAA	-22	NA	137624286	137634526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
transcript_88674.known	chr3	+	733	7	FSM	ENSMUSG00000091512.6	ENSMUST00000197064.5	733	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	115.993773779266	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGGTCTGAGAACACCAC	60	False	NA	NA	False	TATAAA	-16	NA	137624266	137633980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137624389_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
transcript_88677.known	chr3	+	675	6	FSM	ENSMUSG00000091512.6	ENSMUST00000196632.5	675	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	119.774120744007	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGGTCATTCGATTGCA	116	False	NA	NA	False	TATAAA	-37	NA	137624322	137634001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137632569_137632704_137633107_137633172_137633707
transcript_88678.known	chr3	-	3083	9	FSM	ENSMUSG00000028159.15	ENSMUST00000029806.13	3083	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	5.49431524395898	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTCCAACTTTTATAACA	NA	False	NA	NA	False	ATTAAA	-25	NA	137687306	137636767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_137638951_137641342_137641431_137643497_137643584_137644897_137644961_137646621_137646670_137655407_137655539_137667202_137667337_137671641_137671765_137687079
transcript_8868.nnic	chr10	+	1223	8	NNC	ENSMUSG00000019842.7	novel	768	3	NA	NA	-8841	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	25.1452920898866	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTTTATCTCAGTGG	NA	False	NA	5	True	AATAAA	-18	NA	39508288	39530821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_39508350_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
transcript_88681.known	chr3	-	3072	20	FSM	ENSMUSG00000028158.15	ENSMUST00000098580.6	3072	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	5.34670530492644	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCGTGGGTTCCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	137849149	137796815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_137796991_137798339_137798511_137800719_137800845_137808847_137809076_137810427_137810550_137810703_137810802_137812862_137813072_137814716_137814930_137817404_137817513_137818220_137818390_137819816_137819975_137820896_137821048_137821762_137821903_137822167_137822285_137824073_137824182_137829493_137829638_137830818_137831007_137839760_137839897_137844662_137844758_137848932
transcript_88685.known	chr3	+	4025	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTCAGCTAATGTTAAT	NA	False	NA	NA	False	AATAAA	-22	NA	137849208	137865582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
transcript_88687.known	chr3	+	4064	8	FSM	ENSMUSG00000004127.13	ENSMUST00000162864.8	4064	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	64.2622179282759	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTGTCAGCTAATGTT	NA	False	NA	NA	False	AATAAA	-19	NA	137849277	137865579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137849469_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
transcript_88691.known	chr3	+	4258	6	FSM	ENSMUSG00000004127.13	ENSMUST00000161791.2	4258	6	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	13.1209755734854	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGACATA	NA	False	NA	NA	False	NA	NA	NA	137849229	137861579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952
transcript_88693.nic	chr3	+	361	2	ISM	ENSMUSG00000004127.13	ENSMUST00000161791.2	4258	6	-36	8247	-15	-791	5prime_fragment	FALSE	canonical	3	162	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGTACACAGAGCATGCAC	NA	False	NA	47	True	AAAACA	-29	NA	137849193	137853332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_137849358_137853135
transcript_88694.known	chr3	+	1492	9	FSM	ENSMUSG00000074207.11	ENSMUST00000004232.10	1492	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.01817411691241	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTTTCTGTGAAACCT	NA	False	NA	NA	False	AATAAA	-28	NA	137983254	137996459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_137983498_137985491_137985594_137986134_137986274_137988196_137988285_137988375_137988596_137992452_137992714_137994509_137994646_137995562_137995702_137996295
transcript_88698.known	chr3	+	1604	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	0	0	0	0	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	2442	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAGTATTCAGAAAACTT	4924	False	NA	NA	False	AATAAA	-18	NA	138148853	138161260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
transcript_887.known	chr1	-	5030	7	FSM	ENSMUSG00000037503.13	ENSMUST00000047534.12	5030	7	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_3	28.4702573847789	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGACCTTTTCGTGGG	NA	False	NA	-7	True	AATAAA	-18	NA	34882146	34852306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_34856486_34857077_34857208_34858672_34858851_34858947_34859091_34867847_34867929_34875813_34875895_34881908
transcript_88710.known	chr3	-	2686	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	-9	True	ATTAAA	-15	NA	138195276	138164716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
transcript_88718.known	chr3	+	4991	8	FSM	ENSMUSG00000028156.13	ENSMUST00000029803.12	4991	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	682.812550845279	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGCTTGCTTTTTTTGGG	NA	False	NA	NA	False	ATTAAA	-16	NA	138231939	138265457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_138232056_138233028_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
transcript_8872.nic	chr10	+	2027	3	ISM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	274	19695	274	-10146	5prime_fragment	FALSE	canonical	3	53	junction_2	6	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTATAAGAGAGTTGAAA	NA	False	NA	NA	False	AATAAA	-28	NA	39489203	39511608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_39489343_39501845_39502656_39510530
transcript_88722.known	chr3	+	6653	8	FSM	ENSMUSG00000028152.11	ENSMUST00000029800.9	6653	8	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_4	20.1990098767242	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAGTGCATTCTGTATTT	4825	False	NA	NA	False	AATAAA	-26	NA	138447955	138613666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_138448422_138574106_138574158_138596495_138596643_138600108_138600280_138602549_138602676_138603873_138603922_138604027_138604145_138608139
transcript_88723.known	chr3	+	3000	8	FSM	ENSMUSG00000028152.11	ENSMUST00000142890.8	3000	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	43.0926860596637	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGATCACGTCGTCTTA	4935	False	NA	19	True	AATAAA	-32	NA	138448065	138610187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_138448422_138574106_138574158_138596495_138596643_138600108_138600280_138602613_138602676_138603873_138603922_138604027_138604145_138608139
transcript_8873.nic	chr10	+	1865	2	ISM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	297	27709	297	-18160	5prime_fragment	FALSE	canonical	3	65	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATGACACATTTTATGTA	NA	False	NA	NA	False	ATTAAA	-22	NA	39489226	39503594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_39489343_39501845
transcript_88735.known	chr3	-	3598	15	FSM	ENSMUSG00000028149.13	ENSMUST00000196280.5	3598	15	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	20.5834538265222	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGATTACTTGGTTTCT	NA	False	NA	-6	True	AATAAA	-21	NA	138780898	138631666	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661220_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138689482_138689630_138721306_138721433_138727573_138727697_138756241_138756350_138780796
transcript_88736.known	chr3	-	3383	14	FSM	ENSMUSG00000028149.13	ENSMUST00000029796.11	3383	14	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_10	15.970386796752	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGTGAGATTACTTGGT	NA	False	NA	-10	True	AATAAA	-17	NA	138780831	138631670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661223_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138721306_138721433_138727573_138727697_138756241_138756350_138780796
transcript_88739.known	chr3	-	5016	13	FSM	ENSMUSG00000028273.16	ENSMUST00000029941.16	5016	13	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	21.3476514451174	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCACGCCTGGCCTTTTTT	7003	False	NA	-4	True	AATAAA	-19	NA	142101454	141945350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
transcript_8874.nic	chr10	+	3022	14	ISM	ENSMUSG00000019841.16	ENSMUST00000131186.8	10789	33	-41	53155	-32	-20810	5prime_fragment	FALSE	canonical	3	21	junction_2	8.87053496315439	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAGGTCTTCAGGAAAC	NA	False	NA	NA	False	AATAAA	-31	NA	39608081	39698009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_39608610_39618686_39618815_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101
transcript_88751.known	chr3	+	4206	14	FSM	ENSMUSG00000040213.14	ENSMUST00000044392.11	4206	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	23.3184793520062	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTTTTGGTTATAGTG	NA	False	NA	NA	False	NA	NA	NA	142406840	142452631	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_142406937_142412449_142412557_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
transcript_88755.nic	chr3	+	1613	13	NIC	ENSMUSG00000040213.14	novel	1798	15	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	27.8910330074421	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGTGTTGTACTTTC	NA	False	NA	23	True	AATACA	-37	NA	142406794	142450099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_142406937_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
transcript_88756.nnic	chr3	+	1725	13	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10327	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	24.2674622122344	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGTGTTGTACTTTC	NA	False	NA	23	True	AATACA	-37	NA	142418548	142450099	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
transcript_88757.nnic	chr3	+	1914	13	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10327	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	24.2674622122344	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATACCTCATCTGCAGCT	NA	False	NA	NA	False	NA	NA	NA	142418548	142450288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
transcript_88760.known	chr3	+	1455	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	8	True	AATAAA	-15	NA	142470805	142489367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
transcript_88761.known	chr3	+	3200	1	FSM	ENSMUSG00000028271.10	ENSMUST00000196311.2	3200	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAGAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	142470983	142474183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_142471000_142474200
transcript_88763.known	chr3	-	6207	22	FSM	ENSMUSG00000004591.17	ENSMUST00000043812.15	6207	22	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_13	40.9391451479165	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGTAGTGATTACATTT	NA	False	NA	NA	False	AATAAA	-15	NA	142587765	142496662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_142499776_142499863_142499945_142500148_142500257_142504663_142504807_142505565_142505643_142506800_142506864_142509314_142509492_142515233_142515326_142515402_142515479_142515584_142515716_142516121_142516249_142516451_142516627_142517287_142517364_142517674_142517819_142526297_142526408_142527279_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
transcript_88775.nic	chr3	-	1880	10	ISM	ENSMUSG00000004591.17	ENSMUST00000172521.8	2510	16	-76	6764	-62	0	5prime_fragment	FALSE	canonical	3	374	junction_1	53.9089309809253	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAATTTTTTCAAAAC	NA	False	NA	NA	False	NA	NA	NA	142587827	142517313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_142517364_142517674_142517819_142526297_142526408_142527279_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
transcript_88777.known	chr3	-	1206	4	FSM	ENSMUSG00000004591.17	ENSMUST00000172916.2	1206	4	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_1	9.41629792788369	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATCCACA	NA	False	NA	NA	False	NA	NA	NA	142587744	142535998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_142536376_142544968_142545124_142559174_142559476_142587371
transcript_8878.nic	chr10	+	2902	13	ISM	ENSMUSG00000019841.16	ENSMUST00000019986.13	10713	32	-40	53198	-40	-20810	5prime_fragment	FALSE	canonical	3	30	junction_10	6.11464544261471	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAGGTCTTCAGGAAAC	NA	False	NA	NA	False	AATAAA	-31	NA	39608073	39698009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_39608610_39659138_39659329_39666764_39666840_39670859_39671021_39675876_39675974_39680947_39681043_39681595_39681701_39682657_39682743_39682830_39682980_39689966_39690087_39693137_39693376_39696443_39696587_39697101
transcript_88780.nic	chr3	-	1066	2	ISM	ENSMUSG00000004591.17	ENSMUST00000172916.2	1206	4	-465	23249	-444	-543	5prime_fragment	FALSE	canonical	3	522	junction_1	0	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAGAAGAATTACATCACAA	NA	False	NA	58	True	AATAAA	-4	NA	142588209	142559247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_142559476_142587371
transcript_88783.nic	chr3	-	948	2	ISM	ENSMUSG00000004591.17	ENSMUST00000172916.2	1206	4	-465	23367	-444	-661	5prime_fragment	FALSE	canonical	3	522	junction_1	0	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAGAAATAAGGAAAGAAC	NA	False	NA	-60	True	AATAAA	-1	NA	142588209	142559365	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_142559476_142587371
transcript_88784.known	chr3	-	1669	5	FSM	ENSMUSG00000028266.18	ENSMUST00000120539.8	1669	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	8.32165848854662	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGTTTAAACGCTGCT	NA	False	NA	-1	True	AATAAA	-28	NA	143910981	143894290	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_143895067_143899656_143899813_143900167_143900265_143907573_143907813_143910580
transcript_88789.known	chr3	-	6177	7	FSM	ENSMUSG00000040151.10	ENSMUST00000043325.9	6177	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	15.667553166408	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGTAGTAGTATGCGC	NA	False	NA	NA	False	AATAAA	-15	NA	144275942	144135466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_144140476_144141222_144141381_144143355_144143454_144153030_144153170_144159712_144159799_144170807_144171047_144275494
transcript_88793.known	chr3	-	2321	1	FSM	ENSMUSG00000040151.10	ENSMUST00000199680.2	2321	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAGAAAAAAAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	144275919	144273598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_144273600_144275900
transcript_88795.known	chr3	+	1514	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	1132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCTTTGTCCTTTCGTG	NA	False	NA	28	True	AATAAA	-30	NA	144276186	144303441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
transcript_88798.known	chr3	-	3961	9	FSM	ENSMUSG00000037062.14	ENSMUST00000163279.6	3961	9	0	0	0	0	multi-exon	TRUE	canonical	3	282	junction_5	25.8444868395563	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	AAAACA	-20	NA	144426096	144394604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_144397294_144397660_144397890_144402614_144402716_144403138_144403229_144411273_144411367_144412358_144412493_144414993_144415123_144418347_144418490_144425742
transcript_888.known	chr1	-	941	7	FSM	ENSMUSG00000037503.13	ENSMUST00000170092.8	941	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	164.703521516694	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAGCAAATCCTGTTTT	NA	False	NA	-91	True	NA	NA	NA	34882045	34856315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_34856486_34857077_34857208_34858672_34858872_34858947_34859091_34867847_34867929_34875813_34875895_34881908
transcript_88800.nnic	chr3	+	2446	16	NNC	ENSMUSG00000028256.17	novel	2261	16	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	18.7538440503985	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTAATAACAGTATA	NA	False	NA	NA	False	AATAAA	-13	NA	144824302	144859646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_144824548_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_88801.known	chr3	+	2425	16	FSM	ENSMUSG00000028256.17	ENSMUST00000106192.9	2425	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	23.1944437791084	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCAAGTGTCTCGCTATA	NA	False	NA	NA	False	AATAAA	-43	NA	144824349	144859676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_88805.nnic	chr3	+	2317	15	NNC	ENSMUSG00000028256.17	novel	2261	16	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_3	24.2331363624105	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTAATAACAGTATA	NA	False	NA	NA	False	AATAAA	-13	NA	144824302	144859646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_144824548_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_88807.known	chr3	+	2239	15	FSM	ENSMUSG00000028256.17	ENSMUST00000029920.15	2239	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	27.9021614260419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824380	144859650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_88820.known	chr3	+	1127	11	FSM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	0	0	0	0	multi-exon	TRUE	canonical	3	509	junction_1	98.0487633782293	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145281959	145309868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
transcript_88821.nic	chr3	+	1246	11	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	227.48013100049	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145281965	145309868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_145282174_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
transcript_88822.nic	chr3	+	1176	11	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	233.890765102002	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145281976	145309868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_145282115_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
transcript_88826.nic	chr3	+	713	7	ISM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	-46	11229	-46	0	5prime_fragment	FALSE	canonical	3	509	junction_1	110.486801625051	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGTATGAGGCTATGCCG	NA	False	NA	NA	False	AAAAAG	-1	NA	145281913	145298639	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570
transcript_88827.nic	chr3	+	648	6	ISM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	-46	21477	-46	0	5prime_fragment	FALSE	canonical	3	509	junction_1	121.031235637748	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTCACTTTTACTGTAT	NA	False	NA	NA	False	NA	NA	NA	145281913	145288391	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283
transcript_88830.known	chr3	+	443	5	FSM	ENSMUSG00000074182.9	ENSMUST00000200574.5	443	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	344.835739882049	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTATTTCTTCTAATCT	NA	False	NA	NA	False	NA	NA	NA	145282001	145284285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145282040_145282605_145282752_145283856_145283923_145284006_145284114_145284199
transcript_88835.known	chr3	-	2019	5	FSM	ENSMUSG00000028195.5	ENSMUST00000029846.5	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	2.58602010819715	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGAATGTATGTTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	145355736	145352730	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
transcript_88837.known	chr3	+	3764	6	FSM	ENSMUSG00000028194.16	ENSMUST00000029845.15	3764	6	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_5	17.0105849399719	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTAGTGTCTGTCTCGT	NA	False	NA	9	True	AATAAA	-18	NA	145464429	145600032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145464920_145551459_145551560_145558005_145558080_145558911_145559032_145594838_145594983_145597196
transcript_88841.known	chr3	+	321	1	FSM	ENSMUSG00000105388.2	ENSMUST00000197973.2	321	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1553	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATTTTGTTATGAAGAC	8301	False	NA	NA	False	NA	NA	NA	145584774	145585095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145584800_145585100
transcript_88842.known	chr3	+	1949	3	FSM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_2	11.5	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATATTTCAGAG	NA	False	NA	87	True	AATATA	-9	NA	145630016	145640111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145630271_145636160_145636450_145638705
transcript_88843.nic	chr3	+	342	2	ISM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	-9	3872	-9	2553	5prime_fragment	FALSE	canonical	3	357	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACTAAGTAGAGAAGACACA	NA	False	NA	NA	False	NA	NA	NA	145630007	145636239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_145630271_145636160
transcript_88844.known	chr3	+	514	4	FSM	ENSMUSG00000036873.14	ENSMUST00000152783.2	514	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	20.0388511535855	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGGGCATCTAAGATTCG	NA	False	NA	NA	False	AAGAAA	-38	NA	145643944	145649565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649516
transcript_88846.known	chr3	+	1644	4	FSM	ENSMUSG00000036873.14	ENSMUST00000134575.8	1644	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	61.937244225282	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTTAGCATCTTGT	NA	False	NA	3	True	ATTAAA	-17	NA	145643796	145650582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649551
transcript_88850.known	chr3	+	724	3	FSM	ENSMUSG00000036873.14	ENSMUST00000190472.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	94.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGATGATCATGGAAATAA	NA	False	NA	-10	True	NA	NA	NA	145644039	145649997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145644084_145644652_145644852_145649516
transcript_88852.known	chr3	+	1547	3	FSM	ENSMUSG00000036873.14	ENSMUST00000039571.14	1547	3	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_2	10.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTAGCATCTTGTTT	NA	False	NA	5	True	ATTAAA	-19	NA	145643768	145650584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145644084_145644652_145644852_145649551
transcript_88855.known	chr3	+	3810	7	FSM	ENSMUSG00000036863.13	ENSMUST00000212479.2	3810	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	19.8445346520284	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGACGGCTTGTTTTATT	NA	False	NA	NA	False	AAAACA	-21	NA	145693891	145726054	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145694925_145704217_145704866_145707077_145708169_145712770_145712898_145720012_145720195_145721350_145721583_145725557
transcript_88856.known	chr3	+	4712	7	FSM	ENSMUSG00000036863.13	ENSMUST00000200546.2	4712	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	22.9685775692696	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTATTGTAATTGATTT	NA	False	NA	5	True	ATTAAA	-16	NA	145694407	145727475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145694925_145704220_145704866_145707077_145708169_145712770_145712898_145720012_145720195_145721350_145721583_145725557
transcript_88857.nic	chr3	+	2221	3	ISM	ENSMUSG00000036863.13	ENSMUST00000212479.2	3810	7	-384	18821	-117	2839	5prime_fragment	FALSE	canonical	3	37	junction_1	21	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGGTTGCCAGAATTC	NA	False	NA	NA	False	AATAAA	-36	NA	145693507	145707233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_145694925_145704217_145704866_145707077
transcript_88858.nic	chr3	+	2205	3	ISM	ENSMUSG00000036863.13	ENSMUST00000039517.11	5495	7	-104	20242	-104	2839	5prime_fragment	FALSE	canonical	3	28	junction_1	25.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGGTTGCCAGAATTC	NA	False	NA	NA	False	AATAAA	-36	NA	145693520	145707233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_145694925_145704220_145704866_145707077
transcript_88863.known	chr3	+	2464	3	FSM	ENSMUSG00000036832.6	ENSMUST00000039164.4	2464	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAGAAAAAAAAATCAAAT	2274	False	NA	NA	False	AATACA	-34	NA	145926717	145991941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_145926903_145946302_145947060_145990419
transcript_88868.known	chr3	+	2416	15	FSM	ENSMUSG00000036825.13	ENSMUST00000106149.8	2416	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	71.5439425408309	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAAGATGCTCAGAGTT	NA	False	NA	NA	False	CATAAA	-12	NA	146110440	146144661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_146110691_146120450_146120555_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138730_146138902_146142297_146142413_146142930_146143097_146144410
transcript_88869.known	chr3	+	3446	14	FSM	ENSMUSG00000036825.13	ENSMUST00000106153.9	3446	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	20.2423190195674	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGTTGTCCATTCAC	NA	False	NA	22	True	ATTAAA	-24	NA	146110396	146145899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_146110540_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138727_146138902_146142297_146142413_146142930_146143097_146144410
transcript_88873.known	chr3	+	3410	14	FSM	ENSMUSG00000036825.13	ENSMUST00000039021.11	3410	14	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_10	37.3226774028969	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAGTGAAGCCTTGTGT	NA	False	NA	11	True	ATTAAA	-13	NA	146110418	146145888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_146110540_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138730_146138902_146142297_146142413_146142930_146143097_146144410
transcript_88878.known	chr3	+	3232	14	FSM	ENSMUSG00000036825.13	ENSMUST00000106151.8	3232	14	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	53.8853703345785	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATCCCTCTACTAAAGAAA	NA	False	NA	NA	False	ATTAAA	-13	NA	146110396	146145537	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_146110691_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138730_146138902_146142297_146142413_146142930_146143097_146144410
transcript_8888.known	chr10	-	3528	4	FSM	ENSMUSG00000096687.9	ENSMUST00000178563.3	3528	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	4.98887651569859	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGACTGCTTTGTAGCA	NA	False	NA	NA	False	AATAAA	-26	NA	39775234	39766008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_39768926_39770011_39770129_39770767_39770937_39774909
transcript_8889.known	chr10	-	3990	5	FSM	ENSMUSG00000096687.9	ENSMUST00000178045.9	3990	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	6.80073525436772	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGACTGCTTTGTAGCA	NA	False	NA	NA	False	AATAAA	-26	NA	39775211	39766008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_39768926_39770011_39770129_39770767_39770937_39771507_39771993_39774909
transcript_88893.known	chr3	+	2892	7	FSM	ENSMUSG00000028189.13	ENSMUST00000061937.13	2892	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	4.91313432432789	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGACTTATTTTGATC	5954	False	NA	NA	False	AATAAA	-15	NA	146156224	146171604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_146156386_146160101_146160241_146160702_146160912_146163090_146163263_146164497_146164596_146165433_146165596_146169653
transcript_8890.known	chr10	-	5397	6	FSM	ENSMUSG00000019838.12	ENSMUST00000092566.8	5397	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	3.87814388593306	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTGTGATTGTGTTTCT	7143	False	NA	NA	False	AATAAA	-22	NA	40018250	39909527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_39913401_39916594_39916824_39932482_39932627_39952559_39953014_39956658_39956804_40017698
transcript_88901.known	chr3	+	593	3	FSM	ENSMUSG00000068523.13	ENSMUST00000090031.12	593	3	0	0	0	0	multi-exon	FALSE	canonical	3	3573	junction_2	41.5	1336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGGGTACTAATCTTT	NA	False	NA	26	True	AATAAA	-39	NA	146205561	146211327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_146205776_146209014_146209155_146211088
transcript_88903.known	chr3	+	593	3	FSM	ENSMUSG00000068523.13	ENSMUST00000119130.2	593	3	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_1	1761	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205863	146211303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_146206102_146209014_146209155_146211088
transcript_88904.known	chr3	+	2419	2	FSM	ENSMUSG00000068523.13	ENSMUST00000118280.2	2419	2	0	0	0	0	multi-exon	FALSE	canonical	3	3656	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCCTCCTTACTGATG	NA	False	NA	1	True	AATAAA	-14	NA	146205644	146211302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_146205776_146209014
transcript_88908.known	chr3	-	1661	9	FSM	ENSMUSG00000028187.11	ENSMUST00000029838.11	1661	9	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_1	36.008462547018	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCTGTGTGAGCCCAAA	NA	False	NA	NA	False	NA	NA	NA	146227184	146211710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_146212331_146212826_146212954_146213268_146213451_146213896_146213980_146217896_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
transcript_88913.known	chr3	-	1978	5	FSM	ENSMUSG00000028187.11	ENSMUST00000199079.2	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_4	35.3765459026175	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAACAAAAC	NA	False	NA	NA	False	AATACA	-16	NA	146227166	146216549	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
transcript_88915.known	chr3	-	4347	10	FSM	ENSMUSG00000005034.16	ENSMUST00000102515.10	4347	10	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	11.8415464455544	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGAGTCTTCTGTCCG	2698	False	NA	NA	False	ATTAAA	-20	NA	146518715	146435328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675_146453803_146456237_146456321_146457201_146457301_146461386_146461516_146463461_146463524_146518392
transcript_88917.known	chr3	-	3473	1	FSM	ENSMUSG00000005034.16	ENSMUST00000196344.2	3473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAGAAAAGGAAAAAGAG	2668	False	NA	NA	False	NA	NA	NA	146518745	146515272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_146515300_146518700
transcript_88918.known	chr3	-	537	1	FSM	ENSMUSG00000070343.4	ENSMUST00000084614.5	537	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2127	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTGATCCAAAAAGCTAAT	NA	False	NA	NA	False	NA	NA	NA	146545102	146544565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_146544600_146545100
transcript_8892.known	chr10	-	2325	3	FSM	ENSMUSG00000019838.12	ENSMUST00000213488.2	2325	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTGCTTCAGTTTTTCTT	7142	False	NA	NA	False	AATAAA	-27	NA	40018251	39951386	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_39953014_39956658_39956804_40017698
transcript_88924.known	chr3	-	5509	20	FSM	ENSMUSG00000028184.13	ENSMUST00000200543.5	5509	20	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_19	7.16253719419116	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAATAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	148696191	148521728	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_148523565_148528590_148528688_148529331_148529461_148532000_148532170_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198_148660372_148696075
transcript_88927.known	chr3	-	885	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGCTGTGCAGGTGCC	NA	False	NA	NA	False	NA	NA	NA	149779179	149778294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_149778300_149779200
transcript_88929.known	chr3	-	1596	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGGGTATTTTTCTT	NA	False	NA	NA	False	CATAAA	-17	NA	151871867	151799475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
transcript_8893.known	chr10	-	1296	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	0	0	0	0	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6557	False	NA	42	True	TTTAAA	-17	NA	40123032	40099422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
transcript_88930.known	chr3	-	2459	4	FSM	ENSMUSG00000028035.14	ENSMUST00000144950.8	2459	4	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_3	4.18993502999218	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTATAGTCTTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	151915720	151889618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_151891018_151892051_151892621_151899013_151899256_151915471
transcript_88950.known	chr3	+	2526	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196739.5	2526	20	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_19	415.06742768987	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916134	151938408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151937891
transcript_88952.nic	chr3	+	2476	20	NIC	ENSMUSG00000028034.16	novel	2526	20	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	1	416	junction_13	332.523108563197	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916044	151938408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
transcript_88953.known	chr3	+	2374	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196695.5	2374	20	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	300.522177130688	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916155	151938408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
transcript_88955.nic	chr3	+	2473	20	NIC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	1	416	junction_13	305.324648979145	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916044	151938408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
transcript_88957.known	chr3	+	6523	20	FSM	ENSMUSG00000028034.16	ENSMUST00000166984.8	6523	20	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	269.035426927065	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGAGTGTTTGTGTCTT	NA	False	NA	11	True	AATAAA	-16	NA	151916058	151942463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
transcript_88967.known	chr3	+	3163	16	FSM	ENSMUSG00000028034.16	ENSMUST00000198227.5	3163	16	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	270.598809227897	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAGAAAAATAAATAAAGC	NA	False	NA	NA	False	NA	NA	NA	151916128	151930503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922
transcript_88971.known	chr3	+	1040	12	FSM	ENSMUSG00000028034.16	ENSMUST00000199202.5	1040	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	499.405894973101	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAGAAATGGAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	151916109	151926136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_151916338_151919613_151919705_151920461_151920525_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101
transcript_88973.nic	chr3	+	1045	11	ISM	ENSMUSG00000028034.16	ENSMUST00000200524.5	2552	20	-74	12273	-14	0	5prime_fragment	FALSE	canonical	3	549	junction_4	245.266161547002	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAGAAATGGAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	151916044	151926136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101
transcript_88974.nic	chr3	+	1042	11	ISM	ENSMUSG00000028034.16	ENSMUST00000198227.5	3163	16	-84	4367	-14	0	5prime_fragment	FALSE	canonical	3	849	junction_4	159.629226647253	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAGAAATGGAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	151916044	151926136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101
transcript_88980.known	chr3	+	2552	20	FSM	ENSMUSG00000028034.16	ENSMUST00000200524.5	2552	20	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_19	393.500738277491	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	26	True	AATAAA	-16	NA	151916118	151938409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151937891
transcript_88983.known	chr3	-	4965	16	FSM	ENSMUSG00000054942.14	ENSMUST00000073089.13	4965	16	0	0	0	0	multi-exon	TRUE	canonical	3	131	junction_7	24.7194030852059	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTTGTTCTTAATGACT	NA	False	NA	-34	True	AATAAA	-13	NA	152046044	151979485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_151982491_151984529_151984647_151989418_151989473_151990838_151990974_151993141_151993241_151994692_151994780_151996096_151996170_151996427_151996547_152002753_152002855_152023250_152023375_152026246_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
transcript_88995.known	chr3	-	2689	14	FSM	ENSMUSG00000054942.14	ENSMUST00000068243.11	2689	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	50.9351600816605	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAATTAAAAATGT	NA	False	NA	NA	False	ATTAAA	-24	NA	152046042	151981567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_151982491_151984529_151984647_151989418_151989473_151990838_151990974_151993141_151993241_151994692_151994780_152002753_152002855_152023250_152023375_152026246_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
transcript_88998.nic	chr3	-	1730	6	ISM	ENSMUSG00000054942.14	ENSMUST00000199334.5	4024	14	-38	38368	-14	11450	5prime_fragment	FALSE	canonical	3	188	junction_4	9.69535971483266	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTTAACTGTGGGCTTC	NA	False	NA	3	True	NA	NA	NA	152046058	152025581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
transcript_89.known	SIRV2	+	424	1	FSM	SIRV2C	SIRV206	424	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	518	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAACACACTTCCATCCAC	NA	False	NA	NA	False	NA	NA	NA	4033	4457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV2_+_4000_4500
transcript_8900.known	chr10	-	799	8	FSM	ENSMUSG00000038510.13	ENSMUST00000181995.8	799	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	422.287550740256	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGAAGCGACCTGCAGA	6590	False	NA	18	True	AATGAA	-5	NA	40122999	40099808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40120580_40120714_40122948
transcript_89000.known	chr3	-	2842	4	FSM	ENSMUSG00000054942.14	ENSMUST00000199397.2	2842	4	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	10.6770782520313	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTTCTTCTGGACCTA	NA	False	NA	NA	False	NA	NA	NA	152046010	152037031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_152039255_152040888_152041067_152043362_152043682_152045888
transcript_89014.known	chr3	+	4183	24	FSM	ENSMUSG00000025437.16	ENSMUST00000197748.5	4183	24	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_13	66.1683137664235	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGATTTTCTAACTCTAG	NA	False	NA	NA	False	AATAAA	-25	NA	152052125	152099254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
transcript_89015.known	chr3	+	3886	24	FSM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_13	62.1055263911158	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGAATGTTGAATTT	NA	False	NA	NA	False	AATAAA	-17	NA	152052114	152098970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
transcript_8902.known	chr10	-	526	6	FSM	ENSMUSG00000019837.9	ENSMUST00000213628.2	526	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	263.125369358411	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCACTCGGAAGTGGAGG	8654	False	NA	NA	False	NA	NA	NA	40133599	40125643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133561
transcript_89024.nic	chr3	+	2597	21	ISM	ENSMUSG00000025437.16	ENSMUST00000197748.5	4183	24	-18	9416	-7	-53	5prime_fragment	FALSE	canonical	3	245	junction_13	69.5534866128219	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATTGGAAATTTTTATT	NA	False	NA	NA	False	AAGAAA	-3	NA	152052107	152089838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752
transcript_89025.nic	chr3	+	2573	21	ISM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	-7	9132	-7	-53	5prime_fragment	FALSE	canonical	3	273	junction_13	65.1907010239957	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATTGGAAATTTTTATT	NA	False	NA	NA	False	AAGAAA	-3	NA	152052107	152089838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752
transcript_8903.known	chr10	-	2526	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	0	0	0	0	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATAGTTGATGGTTGCA	8586	False	NA	-31	True	AATAAA	-15	NA	40133667	40123698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
transcript_89034.known	chr3	-	3323	14	FSM	ENSMUSG00000039058.12	ENSMUST00000045262.11	3323	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.13575562001795	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTATTTGTAACTCACAT	NA	False	NA	NA	False	AATAAA	-25	NA	152373997	152168451	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_152169654_152178393_152178586_152183977_152184095_152187174_152187339_152204947_152204993_152209485_152209529_152232354_152232432_152238991_152239083_152321494_152321687_152359011_152359126_152359211_152359382_152361505_152361674_152366152_152366340_152373436
transcript_89037.nnic	chr3	+	4373	15	NIC	ENSMUSG00000039068.17	novel	7607	14	NA	NA	-57	0	combination_of_known_splicesites	FALSE	canonical	2	16	junction_4	74.0165797752953	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAAGCTTGTTGTGGAT	NA	False	NA	17	True	AATAAA	-26	NA	152101582	152165111	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_152101776_152125651_152125778_152128254_152128409_152132913_152134470_152152265_152152327_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
transcript_8904.known	chr10	-	452	6	FSM	ENSMUSG00000019837.9	ENSMUST00000216847.2	452	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	265.119897404929	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAAACCTGTGGAGCTGG	8695	False	NA	NA	False	NA	NA	NA	40133558	40125721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133516
transcript_89040.known	chr3	+	7607	14	FSM	ENSMUSG00000039068.17	ENSMUST00000106100.9	7607	14	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	24.8676972569618	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTTCCATTTATTTC	NA	False	NA	13	True	AATAAA	-15	NA	152101639	152168463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_152101776_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
transcript_89043.known	chr3	+	7539	14	FSM	ENSMUSG00000039068.17	ENSMUST00000106101.2	7539	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	63.1683202752023	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTTCCATTTATTTC	NA	False	NA	13	True	AATAAA	-15	NA	152102330	152168463	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_152102399_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
transcript_89053.known	chr3	+	2491	12	FSM	ENSMUSG00000039068.17	ENSMUST00000200570.5	2491	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	80.0980803723712	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGTCTGTTTTTCATCT	NA	False	NA	95	True	GATAAA	-17	NA	152101768	152165189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_152101776_152125651_152125778_152152435_152152575_152154415_152154564_152154652_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
transcript_89059.nic	chr3	+	437	3	ISM	ENSMUSG00000039068.17	ENSMUST00000197987.5	588	6	-133	26091	-57	-5119	5prime_fragment	FALSE	canonical	3	170	junction_1	28	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATATTTCCACAATGATAG	NA	False	NA	NA	False	TATAAA	-10	NA	152101582	152128372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_+_152101776_152125651_152125778_152128254
transcript_89061.nnic	chr3	+	4513	12	NNC	ENSMUSG00000039047.18	novel	4737	11	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	119.183863792167	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCTTGTGCAGTAAGCC	3941	False	NA	NA	False	NA	NA	NA	152419720	152494663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032_152491870_152492109
transcript_89064.known	chr3	+	4737	11	FSM	ENSMUSG00000039047.18	ENSMUST00000159899.8	4737	11	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_8	39.6252444787411	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCTTGTGCAGTAAGCC	3957	False	NA	NA	False	NA	NA	NA	152419736	152494663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
transcript_89072.nnic	chr3	-	2355	3	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134276	1899	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	46	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	-4	True	AATAAA	-24	NA	153065696	152909103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_-_152911229_152912254_152912363_153065574
transcript_89073.known	chr3	-	1399	10	FSM	ENSMUSG00000038975.15	ENSMUST00000198350.5	1399	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	303.195735987477	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGTATATAGCT	6182	False	NA	-4	True	AATAAA	-44	NA	153618564	153612927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
transcript_89074.nic	chr3	-	1504	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	217.717962306997	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGTATATAGCT	6073	False	NA	-4	True	AATAAA	-44	NA	153618673	153612927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
transcript_89075.nic	chr3	-	1341	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	217.717962306997	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	6073	False	NA	-29	True	AATAAA	-16	NA	153618673	153613090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
transcript_89077.known	chr3	-	1381	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_5	268.62508724987	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6100	False	NA	-2	True	AATAAA	-15	NA	153618646	153612925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
transcript_89088.known	chr3	-	2047	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	0	0	0	0	multi-exon	TRUE	canonical	3	875	junction_11	59.2580851965116	804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	NA	False	NA	-6	True	AATAAA	-16	NA	153650269	153627993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
transcript_8909.nic	chr10	-	424	5	ISM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	-27	3453	-22	0	5prime_fragment	FALSE	canonical	3	403	junction_4	116.911291157014	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGTTCACTTCCTTCTCT	8559	False	NA	NA	False	AAGAAA	-7	NA	40133694	40127151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
transcript_89098.nic	chr3	-	792	8	ISM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	122	10671	-43	-2904	5prime_fragment	FALSE	canonical	3	875	junction_7	65.6129653688186	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAACAGCGTGTTTCTTC	114	False	NA	NA	False	AATACA	-13	NA	153650147	153638664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
transcript_89099.nic	chr3	-	681	6	ISM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	-46	15386	-46	552	5prime_fragment	FALSE	canonical	3	875	junction_5	71.7924787146955	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTATTTGGGGAGGATGA	NA	False	NA	NA	False	NA	NA	NA	153650315	153643379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
transcript_8910.known	chr10	-	3206	8	FSM	ENSMUSG00000075232.7	ENSMUST00000238969.2	3206	8	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGTTTTCTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-29	NA	40178184	40163453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
transcript_89100.known	chr3	-	437	2	FSM	ENSMUSG00000062908.13	ENSMUST00000135724.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATTAACTGTAACATAC	161	False	NA	NA	False	AATAAA	-28	NA	153650100	153647238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_153647608_153650032
transcript_89104.known	chr3	+	1059	9	FSM	ENSMUSG00000028199.19	ENSMUST00000194876.6	1059	9	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTATCCATTGGAGA	NA	False	NA	NA	False	AATAGA	-28	NA	154302780	154327804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
transcript_89107.nic	chr3	+	2294	9	NIC	ENSMUSG00000028199.19	novel	2507	9	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	57.5769865050265	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTCTGTCTCGTGTG	NA	False	NA	18	True	AGTAAA	-18	NA	154302803	154328819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_154303165_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
transcript_89108.known	chr3	-	4490	6	FSM	ENSMUSG00000047583.10	ENSMUST00000052774.8	4490	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.35163526410386	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATAAGCCTTAAAAGCAC	NA	False	NA	91	True	NA	NA	NA	154302732	154282067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_154285929_154293113_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
transcript_89109.known	chr3	-	4270	5	FSM	ENSMUSG00000047583.10	ENSMUST00000170461.8	4270	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	28.314086600136	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTGTTCTGTTGCAG	NA	False	NA	2	True	AATAAA	-20	NA	154302735	154282156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_154285929_154296720_154296793_154299353_154299453_154300090_154300172_154302489
transcript_89110.known	chr3	-	875	4	FSM	ENSMUSG00000053870.8	ENSMUST00000194095.2	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	10.0332779621949	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTGAAAACATGCACCGC	NA	False	NA	NA	False	NA	NA	NA	154798834	154793355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_154793707_154795748_154795842_154797027_154797196_154798571
transcript_89111.known	chr3	-	3518	4	FSM	ENSMUSG00000053870.8	ENSMUST00000066568.6	3518	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	2.16024689946929	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGAAATTTTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	154799040	154790554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_154793707_154795748_154795842_154797027_154797196_154798935
transcript_89113.known	chr3	+	2737	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	297.644569915193	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCTCTGACTGAATGTT	NA	False	NA	3	True	AATAAA	-11	NA	157240024	157254013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
transcript_89114.known	chr3	+	2924	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	0	0	0	0	multi-exon	TRUE	canonical	3	697	junction_8	81.8057017542553	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTGTCACTGT	NA	False	NA	37	True	AATAAA	-45	NA	157239796	157254047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
transcript_89115.known	chr3	+	765	8	FSM	ENSMUSG00000028180.19	ENSMUST00000198915.5	765	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	301.425592402341	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGTTCCAGAGAACATTCC	NA	False	NA	NA	False	NA	NA	NA	157240012	157248838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_157240112_157241970_157242024_157242119_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794
transcript_89116.known	chr3	-	410	1	FSM	ENSMUSG00000104862.2	ENSMUST00000200636.2	410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTGTGTGCATGTTTT	NA	False	NA	NA	False	AAGAAA	-9	NA	157594511	157594101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157594100_157594500
transcript_89125.known	chr3	-	1815	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	0	0	0	0	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	-16	True	AATAAA	-18	NA	157630714	157599884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
transcript_89143.known	chr3	-	675	3	FSM	ENSMUSG00000028179.13	ENSMUST00000129805.2	675	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	531.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGGTTTTTTTTTGA	NA	False	NA	-18	True	ATTAAA	-19	NA	157603349	157600059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157600465_157602828_157602968_157603218
transcript_89144.nnic	chr3	+	4170	14	NNC	ENSMUSG00000039988.15	novel	3903	13	NA	NA	-253	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	93.5941762209872	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGTGCCTATTAATCC	NA	False	NA	15	True	AATAAA	-23	NA	157652622	157713671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_157652952_157653112_157653594_157666620_157666663_157667914_157668020_157677868_157677955_157678636_157678683_157680864_157680932_157694276_157694422_157697317_157697450_157700233_157700396_157705293_157705374_157706710_157706810_157709345_157709447_157711376
transcript_89146.nnic	chr3	+	3965	14	NNC	ENSMUSG00000039988.15	novel	3903	13	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	93.5941762209872	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGTGCCTATTAATCC	NA	False	NA	15	True	AATAAA	-23	NA	157652823	157713671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr3_+_157652929_157653093_157653594_157666620_157666663_157667914_157668020_157677868_157677955_157678636_157678683_157680864_157680932_157694276_157694422_157697317_157697450_157700233_157700396_157705293_157705374_157706710_157706810_157709345_157709447_157711376
transcript_89148.known	chr3	+	3903	13	FSM	ENSMUSG00000039988.15	ENSMUST00000040787.13	3903	13	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_4	30.2143959433615	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGTGCCTATTAATCC	NA	False	NA	15	True	AATAAA	-23	NA	157653050	157713671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_157653594_157666620_157666663_157667914_157668020_157677868_157677955_157678636_157678683_157680864_157680932_157694276_157694422_157697317_157697450_157700233_157700396_157705293_157705374_157706710_157706810_157709345_157709447_157711376
transcript_89154.known	chr3	+	3426	12	FSM	ENSMUSG00000039988.15	ENSMUST00000199727.5	3426	12	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	98.369517552294	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACTGAGCCATCTCTCC	NA	False	NA	NA	False	NA	NA	NA	157652875	157713065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_157653594_157666620_157666663_157667914_157668020_157677868_157677955_157680864_157680932_157694276_157694422_157697317_157697450_157700233_157700396_157705293_157705374_157706710_157706810_157709345_157709447_157711376
transcript_89161.known	chr3	-	3106	13	FSM	ENSMUSG00000055436.19	ENSMUST00000121326.8	3106	13	0	0	0	0	multi-exon	TRUE	canonical	3	316	junction_12	95.9239788698437	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGAGTAACTTTTTAAA	NA	False	NA	0	True	ATTAAA	-38	NA	157742276	157716109	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
transcript_89162.known	chr3	-	1643	13	FSM	ENSMUSG00000055436.19	ENSMUST00000069025.14	1643	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	173.80710492446	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAAGCTATAAAGTGGTA	NA	False	NA	NA	False	NA	NA	NA	157742188	157717505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157717841_157717946_157718086_157718416_157718534_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
transcript_89166.known	chr3	-	2654	12	FSM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_1	36.7913482463625	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157737403	157716555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
transcript_8917.known	chr10	-	1442	7	FSM	ENSMUSG00000075232.7	ENSMUST00000213620.2	1442	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	51.8183258016784	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGAAGAAGAAAAAAC	NA	False	NA	NA	False	AAGAAA	-27	NA	40178182	40165319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_40165466_40166113_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
transcript_89179.nic	chr3	-	1262	11	ISM	ENSMUSG00000055436.19	ENSMUST00000121326.8	3106	13	-26	2307	-26	-429	5prime_fragment	FALSE	canonical	3	316	junction_10	104.06944796625	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGGGTATCATTTATATC	NA	False	NA	-1	True	AAGAAA	-28	NA	157742302	157718416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
transcript_89182.nic	chr3	-	1244	10	ISM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	-14	1861	-14	-429	5prime_fragment	FALSE	canonical	3	622	junction_4	28.4839135887843	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGGGTATCATTTATATC	NA	False	NA	-1	True	AAGAAA	-28	NA	157737417	157718416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
transcript_89193.nic	chr3	-	1076	9	ISM	ENSMUSG00000055436.19	ENSMUST00000069025.14	1643	13	-114	4453	-26	0	5prime_fragment	FALSE	canonical	3	316	junction_8	116.256115430544	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACGTTTGTGCAAAGCAGA	NA	False	NA	-2	True	NA	NA	NA	157742302	157721958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
transcript_89195.nic	chr3	-	1058	8	ISM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	-14	5403	-14	0	5prime_fragment	FALSE	canonical	3	622	junction_2	28.5228157868076	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACGTTTGTGCAAAGCAGA	NA	False	NA	-2	True	NA	NA	NA	157737417	157721958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr3_-_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
transcript_8920.known	chr10	+	5807	13	FSM	ENSMUSG00000038481.14	ENSMUST00000044672.11	5807	13	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_12	6.08447477875727	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCGTGGGTTATTTTA	NA	False	NA	8	True	AATAAA	-16	NA	40225303	40359814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_40225718_40270320_40270397_40310299_40310411_40312067_40312209_40330010_40330069_40342633_40342766_40345574_40345719_40345881_40345952_40351564_40351638_40352152_40352251_40352884_40352964_40353697_40353965_40355670
transcript_89201.known	chr3	-	2415	3	FSM	ENSMUSG00000055436.19	ENSMUST00000133090.2	2415	3	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	185	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAAAAAAAAATACTCTT	NA	False	NA	NA	False	NA	NA	NA	157742248	157730373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157732496_157737088_157737286_157742152
transcript_89204.known	chr3	-	642	2	FSM	ENSMUSG00000055436.19	ENSMUST00000196034.2	642	2	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTTTTGCTATCTTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	157737397	157732162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157732496_157737088
transcript_89206.known	chr3	-	930	2	FSM	ENSMUSG00000055436.19	ENSMUST00000197292.2	930	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAGCCAAATTTTGGTGG	NA	False	NA	NA	False	AGTAAA	-3	NA	157742251	157736454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157737286_157742152
transcript_89207.known	chr3	-	1570	1	FSM	ENSMUSG00000055436.19	ENSMUST00000199742.2	1570	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157737391	157735821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157735800_157737400
transcript_89208.known	chr3	-	2470	1	FSM	ENSMUSG00000105201.2	ENSMUST00000198192.2	2470	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAATAAGCAA	NA	False	NA	NA	False	NA	NA	NA	157742046	157739576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_-_157739600_157742000
transcript_89214.known	chr3	+	4142	15	FSM	ENSMUSG00000063052.10	ENSMUST00000072080.10	4142	15	0	0	0	0	multi-exon	FALSE	canonical	3	641	junction_2	81.4479926714224	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGTAGTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-24	NA	157742298	157774124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_89218.known	chr3	+	2701	15	FSM	ENSMUSG00000063052.10	ENSMUST00000150525.8	2701	15	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	284.951275820686	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742338	157772726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_157742514_157746077_157746260_157747499_157747571_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_8922.known	chr10	+	3814	12	FSM	ENSMUSG00000038481.14	ENSMUST00000214659.2	3814	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	10.2900095976953	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTATGTATGTGTAT	NA	False	NA	NA	False	NA	NA	NA	40225521	40358097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_40225718_40270320_40270397_40310299_40310411_40312067_40312209_40342633_40342766_40345574_40345719_40345881_40345952_40351564_40351638_40352152_40352251_40352884_40352964_40353697_40353965_40355670
transcript_89224.nic	chr3	+	2681	14	NIC	ENSMUSG00000063052.10	novel	2701	15	NA	NA	-11	0	combination_of_known_junctions	TRUE	canonical	3	146	junction_2	190.962278254048	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742287	157772726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_89232.known	chr3	+	2450	13	FSM	ENSMUSG00000063052.10	ENSMUST00000156597.8	2450	13	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	215.046296694973	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742336	157772726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_157742514_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_8924.known	chr10	+	2408	5	FSM	ENSMUSG00000063428.9	ENSMUST00000213442.2	2408	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1.29903810567666	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTCTACTGTTCTTCCT	NA	False	NA	NA	False	CATAAA	-16	NA	40506041	40517564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_40506088_40507601_40507777_40508933_40509043_40513340_40513518_40515663
transcript_89244.known	chr3	+	3323	12	FSM	ENSMUSG00000028175.16	ENSMUST00000120272.8	3323	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	13.4778667659976	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTATTTTTTTCAATC	NA	False	NA	NA	False	AATAAA	-20	NA	159201069	159235592	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159228162_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234635
transcript_89248.known	chr3	+	1971	11	FSM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	17.3262806164508	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTGCTTCTTTATTTAT	NA	False	NA	NA	False	AAAACA	-43	NA	159201094	159235096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159229413_159229587_159232167_159232345_159233580_159233767_159234635
transcript_8925.known	chr10	+	3000	5	FSM	ENSMUSG00000063428.9	ENSMUST00000019977.8	3000	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTGTGTGTGATCTCTT	NA	False	NA	NA	False	AATAAA	-16	NA	40506006	40525927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_40506088_40507601_40507777_40508933_40509043_40513340_40513518_40523469
transcript_89253.known	chr3	+	2453	13	FSM	ENSMUSG00000028173.11	ENSMUST00000200191.2	2453	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12.3153021346074	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAAACTTCATGAGAAAT	NA	False	NA	NA	False	TATAAA	-3	NA	159545375	159640539	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_159545685_159554201_159554283_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886
transcript_89254.known	chr3	+	2050	13	FSM	ENSMUSG00000028173.11	ENSMUST00000198878.2	2050	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	7.78888096369861	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATTATTTCCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	159545373	159644300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886_159640006_159644090
transcript_89255.known	chr3	+	3559	12	FSM	ENSMUSG00000028173.11	ENSMUST00000068952.10	3559	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	6.38697020736374	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATGGAGTGAGGTGTC	NA	False	NA	NA	False	AATAAA	-29	NA	159545308	159641659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886
transcript_89259.known	chr3	+	2371	1	FSM	ENSMUSG00000105990.2	ENSMUST00000199465.2	2371	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAGAAAAGAA	NA	False	NA	NA	False	AATAAA	-35	NA	159581482	159583853	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr3_+_159581500_159583900
transcript_89261.known	chr4	-	2773	9	FSM	ENSMUSG00000028232.14	ENSMUST00000154922.8	2773	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	30.0083321762473	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAAACTATTTTTGG	-11	True	NA	NA	False	AATAAA	-14	NA	3574809	3549040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3562019_3562147_3564092_3564258_3569363_3569753_3570320_3570373_3574703
transcript_89263.known	chr4	-	2690	8	FSM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	11.6233403467474	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAAACTATTTTTGG	280	False	NA	NA	False	AATAAA	-14	NA	3574853	3549040	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574703
transcript_89264.known	chr4	+	4327	13	FSM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	0	0	0	0	multi-exon	FALSE	canonical	2	97	junction_11	33.5186515241887	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATTTTGTTTTATTTTT	-18	True	NA	11	True	NA	NA	NA	3574874	3616619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356_3595658_3598513_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858
transcript_8927.known	chr10	-	3534	15	FSM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_10	18.6027208894236	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	-3	True	AATAAA	-19	NA	40759307	40707616	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
transcript_89270.nic	chr4	+	1995	8	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	-19	20962	-19	-2949	5prime_fragment	FALSE	canonical	3	152	junction_6	22.2049819745434	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAATGCATGTGCTTGG	-8	True	NA	NA	False	AAGAAA	-31	NA	3574855	3595657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356
transcript_89275.nic	chr4	+	548	4	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	-19	31117	-19	1571	5prime_fragment	FALSE	canonical	3	157	junction_3	13.1402688962847	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAGAAGCGGTATTTAGA	-8	True	NA	NA	False	AATAAA	-28	NA	3574855	3585502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451
transcript_89276.nic	chr4	+	1270	4	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	-19	30395	-19	2293	5prime_fragment	FALSE	canonical	3	157	junction_3	13.1402688962847	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATATATCTGAGAACAGAA	-8	True	NA	NA	False	AAGAAA	-2	NA	3574855	3586224	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451
transcript_89277.nic	chr4	+	497	3	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	-19	31431	-19	1257	5prime_fragment	FALSE	canonical	3	170	junction_2	9.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGGGTCTACTCTTCATA	-8	True	NA	NA	False	NA	NA	NA	3574855	3585188	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_3575130_3583424_3583490_3585030
transcript_89278.known	chr4	+	3387	13	FSM	ENSMUSG00000042228.15	ENSMUST00000103010.4	3387	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	11.3023473471468	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCATCTTGTCTTACTT	5	True	NA	NA	False	ACTAAA	-17	NA	3678126	3791612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3678365_3738724_3738799_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
transcript_89281.known	chr4	+	3463	13	FSM	ENSMUSG00000042228.15	ENSMUST00000041377.13	3463	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	7.08823359911026	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATCTTGTCTTACTTC	-7	True	NA	NA	False	ACTAAA	-18	NA	3678114	3791613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3678365_3738724_3738862_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
transcript_89286.known	chr4	-	3706	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	0	0	0	0	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	4729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTAGTTGCTCATGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	3835665	3831333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
transcript_89288.known	chr4	-	582	3	FSM	ENSMUSG00000028234.7	ENSMUST00000103009.5	582	3	0	0	0	0	multi-exon	FALSE	canonical	3	6653	junction_2	831.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	110	False	NA	-40	True	AATAAA	-15	NA	3835488	3834472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_3834684_3834935_3835010_3835191
transcript_89289.known	chr4	-	1449	1	FSM	ENSMUSG00000078365.6	ENSMUST00000105158.2	1449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAAGTGCTTTTCCTAA	3131	False	NA	NA	False	AATAAA	-17	NA	3872105	3870656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_3870700_3872100
transcript_89290.known	chr4	+	526	6	FSM	ENSMUSG00000042198.13	ENSMUST00000123769.8	526	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	191.556153646914	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGACAAAATGGAGTTCAG	124	False	NA	-92	True	NA	NA	NA	3939042	3943406	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3939132_3939378_3939527_3940778_3940884_3941245_3941312_3942720_3942820_3943387
transcript_89291.known	chr4	+	711	6	FSM	ENSMUSG00000042198.13	ENSMUST00000120732.8	711	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	192.067279878693	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3942987_3943027_3943387
transcript_89295.known	chr4	+	672	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	68.1762421962372	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
transcript_89296.known	chr4	+	426	5	FSM	ENSMUSG00000042198.13	ENSMUST00000149544.8	426	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	158.419537936455	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAAAGATGCCCTACTGA	NA	False	NA	-26	True	NA	NA	NA	3938889	3943472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3938963_3939423_3939527_3941245_3941312_3942720_3942820_3943387
transcript_89297.known	chr4	+	524	5	FSM	ENSMUSG00000042198.13	ENSMUST00000108386.8	524	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	133.401649165218	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	NA	False	NA	25	True	ATTAAA	-18	NA	3938887	3943523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3938963_3939378_3939527_3941245_3941312_3942720_3942820_3943387
transcript_89298.known	chr4	+	620	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	167.916645988419	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACATGTTTTGGGGTTT	-5	True	NA	23	True	ATTAAA	-16	NA	3938913	3943521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
transcript_893.known	chr1	+	3279	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	21.365621823817	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTCTCATTGTGACTTC	NA	False	NA	18	True	ATTAAA	-18	NA	34889072	34918661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
transcript_89300.known	chr4	+	548	4	FSM	ENSMUSG00000042198.13	ENSMUST00000121210.8	548	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	176.426251510999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGAGCACTGGATCCAG	-5	True	NA	NA	False	CATAAA	-4	NA	3938913	3943050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_3938963_3939423_3939527_3941245_3941312_3942720
transcript_89303.known	chr4	-	504	1	FSM	ENSMUSG00000068240.6	ENSMUST00000089430.6	504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2975	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATCCAAGGCTACATC	6	True	NA	NA	False	AATAAA	-41	NA	3973595	3973091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_3973100_3973600
transcript_89304.nnic	chr4	-	1342	3	NNC	ENSMUSG00000045573.10	novel	721	3	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGTAAGAACTGGCTGT	149	False	NA	-7	True	AATAAA	-24	NA	4138858	4133530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_4134508_4138005_4138147_4138634
transcript_89305.known	chr4	-	6543	5	FSM	ENSMUSG00000066324.3	ENSMUST00000084949.3	6543	5	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	6.90561365846657	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATGCTGTGTTGGTGTTT	-27	True	NA	-4	True	AATAAA	-22	NA	4793355	4762483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_4767973_4769311_4769474_4776313_4776410_4778192_4778356_4792722
transcript_8931.nic	chr10	-	726	6	ISM	ENSMUSG00000038446.9	ENSMUST00000215051.2	2925	8	-31	4630	-14	-4630	5prime_fragment	FALSE	canonical	3	163	junction_1	15.9749804381727	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGCAAACAGGAAGAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	40759119	40725789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
transcript_89315.known	chr4	+	618	4	FSM	ENSMUSG00000049119.15	ENSMUST00000124256.8	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	25.9272486435067	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACGGCCTGGAAGGGGA	-17	True	NA	NA	False	ATTAAA	-31	NA	5644089	5798382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_5644411_5678902_5678999_5729570_5729658_5798268
transcript_89317.known	chr4	+	3210	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	17	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGCTGATTTCTTTGTC	14	True	NA	12	True	AATAAA	-21	NA	5644120	5801101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_5644411_5729570_5729658_5798268
transcript_89323.known	chr4	+	6642	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_2	16.4614577676685	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCGTGCCTCAGTGTGAC	-10	True	NA	22	True	AATAAA	-24	NA	6191097	6221688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
transcript_8933.nic	chr10	-	828	5	ISM	ENSMUSG00000038446.9	ENSMUST00000215051.2	2925	8	-281	5866	-62	5345	5prime_fragment	FALSE	canonical	3	197	junction_1	4.32290411644765	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGGAAAAAGTTCAAAGAAA	NA	False	NA	6	True	AAGAAA	-9	NA	40759369	40727025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
transcript_89333.known	chr4	-	3507	31	FSM	ENSMUSG00000028245.16	ENSMUST00000029910.12	3507	31	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_12	11.571804814577	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTCTTATCTTATTTAAA	25	True	NA	NA	False	ATTAAA	-21	NA	6454271	6396206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_6396818_6398318_6398429_6398544_6398648_6398808_6398960_6406786_6406871_6408557_6408682_6409089_6409158_6409843_6409912_6413567_6413627_6414963_6415073_6416499_6416664_6417164_6417208_6417745_6417878_6418260_6418382_6418471_6418524_6419863_6419928_6420049_6420141_6421056_6421137_6423321_6423499_6424878_6424988_6426401_6426474_6428391_6428522_6432679_6432733_6432829_6432878_6433262_6433335_6435056_6435108_6437741_6437779_6437853_6437922_6438042_6438122_6440899_6440990_6453984
transcript_89342.known	chr4	+	2086	9	FSM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	110.946425697271	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCGTCTGTCTGTGCCTG	-5	True	NA	13	True	ATTAAA	-18	NA	6365676	6395655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
transcript_89346.known	chr4	-	3853	9	FSM	ENSMUSG00000041261.10	ENSMUST00000066674.8	3853	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	2.31503239718152	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTTGCTTTGATGATG	-1	True	NA	NA	False	AATAAA	-23	NA	8239041	8143361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_8146217_8169595_8169766_8183252_8183366_8184583_8184633_8185575_8185639_8189296_8189393_8221549_8221675_8237918_8238111_8238851
transcript_8935.known	chr10	+	2609	9	FSM	ENSMUSG00000019831.15	ENSMUST00000019975.14	2609	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	81.4024531264261	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTCGCTCTTCGAG	NA	False	NA	17	True	AATAAA	-19	NA	40759470	40814565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_40759606_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809108_40809282_40810472_40810653_40812105_40812735_40813641
transcript_89353.known	chr4	+	2133	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	0	0	0	0	multi-exon	FALSE	canonical	3	1070	junction_6	76.6414924655499	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTAATGGCTGCCTTT	-17	True	NA	86	True	NA	NA	NA	8535643	8607778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
transcript_89358.nic	chr4	+	777	7	ISM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	-59	3380	-59	-3380	5prime_fragment	FALSE	canonical	3	1070	junction_6	78.2469381722591	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTATGAAAAAATCCAAGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	8535584	8604398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373
transcript_8936.known	chr10	+	2719	9	FSM	ENSMUSG00000019831.15	ENSMUST00000105509.2	2719	9	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	32.5209067370515	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTGTCGCTCTTCGAGT	NA	False	NA	18	True	AATAAA	-20	NA	40759822	40814566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_40760067_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809108_40809282_40810472_40810653_40812105_40812735_40813641
transcript_89364.known	chr4	+	2381	3	FSM	ENSMUSG00000041235.13	ENSMUST00000127476.8	2381	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	6	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAGAAAAAGAAA	43	False	NA	NA	False	NA	NA	NA	8690469	8785591	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_8690776_8751323_8753149_8785341
transcript_89366.known	chr4	+	4953	2	FSM	ENSMUSG00000041235.13	ENSMUST00000170457.2	4953	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	-21	True	NA	NA	False	NA	NA	NA	8690405	8755906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_8690776_8751323
transcript_89372.known	chr4	-	6694	24	FSM	ENSMUSG00000028207.19	ENSMUST00000078139.13	6694	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	108.084473020543	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATGTTTTGTGTTTT	NA	False	NA	NA	False	AATAAA	-30	NA	9669162	9449078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_89381.known	chr4	-	6646	23	FSM	ENSMUSG00000028207.19	ENSMUST00000108340.9	6646	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	115.972932507461	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATGTTTTGTGTTTT	NA	False	NA	NA	False	AATAAA	-30	NA	9669162	9449078	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_89411.known	chr4	-	2884	14	FSM	ENSMUSG00000028207.19	ENSMUST00000084915.11	2884	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	124.875606744325	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	False	NA	-4	True	AATAAA	-17	NA	9669162	9575266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_89416.known	chr4	-	2836	13	FSM	ENSMUSG00000028207.19	ENSMUST00000108337.8	2836	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	142.503411265212	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	False	NA	-4	True	AATAAA	-17	NA	9669162	9575266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_8942.known	chr10	-	3282	23	FSM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_19	28.6394298502739	496	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGTTTTGCTTCTGACT	NA	False	NA	-25	True	AATAAA	-17	NA	41179256	41064167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
transcript_89424.known	chr4	+	636	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	85	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	20	False	NA	NA	False	AAAAAG	-44	NA	10848419	10849055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_10848400_10849100
transcript_89427.known	chr4	+	2116	6	FSM	ENSMUSG00000059482.16	ENSMUST00000080517.14	2116	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	10.0079968025574	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATGTCTCTGTGCAA	NA	False	NA	11	True	AATAAA	-15	NA	10874497	10899421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
transcript_89432.known	chr4	-	2977	2	FSM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	0	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTTATATTG	NA	False	NA	-1	True	AATAAA	-17	NA	11007676	10988661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_10991355_11007392
transcript_89433.known	chr4	-	668	2	FSM	ENSMUSG00000049969.4	ENSMUST00000137891.2	668	2	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGCCTGTGCGGATTTGT	NA	False	NA	NA	False	NA	NA	NA	11007927	10990748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_10991355_11007865
transcript_89436.known	chr4	-	863	9	FSM	ENSMUSG00000050323.15	ENSMUST00000126468.8	863	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_7	109.001146782958	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTACTTAAAGAAAATCCAG	36	False	NA	NA	False	NA	NA	NA	11076149	11051212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073139_11073244_11075979
transcript_89439.nic	chr4	-	1053	8	NIC	ENSMUSG00000050323.15	novel	1082	9	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_6	137.492263233171	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	NA	False	NA	-3	True	TTTAAA	-3	NA	11076228	11051044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11070199_11070323_11073139_11073244_11075979
transcript_89443.nic	chr4	-	531	4	ISM	ENSMUSG00000050323.15	ENSMUST00000126468.8	863	9	-79	15440	-23	3601	5prime_fragment	FALSE	canonical	3	35	junction_2	140.31630933953	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAAGTTGGAGTTATCCA	NA	False	NA	NA	False	ACTAAA	-29	NA	11076228	11066652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_11066708_11070199_11070323_11073139_11073244_11075979
transcript_89444.known	chr4	-	1082	9	FSM	ENSMUSG00000050323.15	ENSMUST00000058183.9	1082	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	119.468549731718	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	-19	True	NA	-3	True	TTTAAA	-3	NA	11076204	11051044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073143_11073244_11075979
transcript_89445.known	chr4	+	5432	5	FSM	ENSMUSG00000028211.12	ENSMUST00000132010.8	5432	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	77.6997425993163	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGAGGATTCTTTTAT	8	True	NA	16	True	AATAAA	-17	NA	11156440	11174379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11167896_11167935_11169709
transcript_89448.known	chr4	+	5404	4	FSM	ENSMUSG00000028211.12	ENSMUST00000029865.4	5404	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	56.8409085860605	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGAGGATTCTTTTAT	-2	True	NA	16	True	AATAAA	-17	NA	11156430	11174379	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11169709
transcript_89449.known	chr4	+	1674	3	FSM	ENSMUSG00000028211.12	ENSMUST00000132693.2	1674	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_2	19	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAAAATCATGTCTTT	11	True	NA	NA	False	AATATA	-19	NA	11156443	11166400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11156548_11164310_11164570_11165089
transcript_89455.known	chr4	-	3220	27	FSM	ENSMUSG00000040738.11	ENSMUST00000108319.9	3220	27	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_22	31.9212464720813	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTACAATTTAGTGGT	-1	True	NA	-14	True	ATTAAA	-20	NA	11254258	11204382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
transcript_89466.known	chr4	-	3169	26	FSM	ENSMUSG00000040738.11	ENSMUST00000108318.3	3169	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	92.871920406547	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTACAATTTAGTGGT	-1	True	NA	-14	True	ATTAAA	-20	NA	11254258	11204382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
transcript_89468.nic	chr4	-	3119	26	ISM	ENSMUSG00000040738.11	ENSMUST00000108319.9	3220	27	-29	4372	-29	0	5prime_fragment	FALSE	canonical	3	373	junction_21	32.4407151585781	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAGATCTTGTTTGTTC	NA	False	NA	NA	False	ATTAAA	-22	NA	11254287	11208754	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
transcript_89481.known	chr4	+	2908	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAAAAAATGGCATCAC	309	False	NA	NA	False	NA	NA	NA	11191729	11204682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
transcript_89486.nic	chr4	-	1420	10	ISM	ENSMUSG00000040738.11	ENSMUST00000108319.9	3220	27	-29	30205	-29	-2020	5prime_fragment	FALSE	canonical	3	373	junction_5	29.3602570042911	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTTCTCCTTGAGGTA	NA	False	NA	NA	False	AAGAAA	-4	NA	11254287	11234587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
transcript_89488.known	chr4	-	3433	28	FSM	ENSMUSG00000040738.11	ENSMUST00000044616.10	3433	28	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	89.9121351314479	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAATATTAATACTTCAA	-1	True	NA	NA	False	AATAAA	-18	NA	11254258	11199157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11199452_11204463_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
transcript_89489.nnic	chr4	-	6709	20	NNC	ENSMUSG00000045205.17	novel	6754	19	NA	NA	-15	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	16.2903026742549	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTAACTCGTACTTG	NA	False	NA	-14	True	AATAAA	-19	NA	11322152	11261319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_11262879_11262933_11265943_11267612_11267772_11273006_11273140_11276863_11276947_11277928_11277986_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11309365_11309491_11317072_11317181_11321999
transcript_89490.known	chr4	-	6754	19	FSM	ENSMUSG00000045205.17	ENSMUST00000084892.12	6754	19	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_13	8.17176711475418	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTCGTACTTGATCTT	-10	True	NA	-9	True	AATAAA	-24	NA	11322137	11261314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11265943_11267612_11267772_11273006_11273140_11276863_11276947_11277928_11277986_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11309365_11309491_11317072_11317181_11321999
transcript_89497.known	chr4	-	3696	14	FSM	ENSMUSG00000040728.16	ENSMUST00000108313.8	3696	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.1902217466658	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGCACTCTTCTTCTTG	7117	False	NA	2	True	AATAAA	-21	NA	11386783	11331932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11333474_11353294_11353464_11357471_11357659_11359737_11359957_11360953_11361256_11365003_11365047_11365143_11365277_11365373_11365485_11366907_11366963_11367084_11367184_11379290_11379406_11384348_11384463_11385646_11385776_11386304
transcript_89500.known	chr4	+	6506	24	FSM	ENSMUSG00000040720.16	ENSMUST00000059914.13	6506	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_9	10.2468585254619	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAAGTGTATGAGTCT	2	True	NA	NA	False	TATAAA	-29	NA	11485957	11550684	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594_11527140_11527647_11527884_11528537_11528791_11530827_11531046_11534188_11534322_11539909_11540063_11540480_11540642_11542106_11542204_11544830_11544998_11545968_11546301_11548730_11548875_11549544
transcript_89503.known	chr4	+	3954	13	FSM	ENSMUSG00000040720.16	ENSMUST00000055372.14	3954	13	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_9	7.54799458281617	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACACACATTATACTTTTT	2	True	NA	NA	False	AATAAA	-15	NA	11485957	11527621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594
transcript_89509.nnic	chr4	+	2849	15	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	83.7823955011932	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	NA	False	NA	19	True	AGTAAA	-16	NA	11558867	11615805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610441_11612371_11612439_11612617_11612819_11615442
transcript_89510.known	chr4	+	2870	15	FSM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_12	66.7496464868725	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	25	True	NA	19	True	AGTAAA	-16	NA	11558971	11615805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
transcript_89515.nnic	chr4	+	2711	14	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	84	junction_13	71.5348220745028	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	-17	True	NA	19	True	AGTAAA	-16	NA	11558929	11615805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11615442
transcript_89534.nnic	chr4	+	2563	5	NNC	ENSMUSG00000078773.12	novel	2403	4	NA	NA	-54	6	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	91.7261549395809	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGAATTTATGTTATG	NA	False	NA	NA	False	AATAAA	-15	NA	11558867	11585750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633_11578714_11583676
transcript_89538.known	chr4	+	652	4	FSM	ENSMUSG00000078773.12	ENSMUST00000108306.9	652	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	82.7056359761668	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACGTACGATACAGGTA	2	True	NA	NA	False	GATAAA	-13	NA	11558948	11578957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633
transcript_89539.known	chr4	+	2403	4	FSM	ENSMUSG00000078773.12	ENSMUST00000095145.12	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	85.9883713068226	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTATATATTGAATTTAT	-5	True	NA	NA	False	AATAAA	-9	NA	11558941	11585744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676
transcript_89541.nic	chr4	+	470	4	ISM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	-50	22070	0	82	5prime_fragment	FALSE	canonical	3	199	junction_3	10.9645894689324	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGAAGGCGATGCTATTC	-25	True	NA	-36	True	AAGAAA	-12	NA	11558921	11593735	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620
transcript_89544.known	chr4	+	2006	5	FSM	ENSMUSG00000028214.14	ENSMUST00000108304.9	2006	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.17944947177034	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTGCTATCCTCCATG	10	False	NA	NA	False	AATAAA	-26	NA	11704456	11714752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_11704567_11705904_11706242_11711138_11711216_11711969_11712175_11713475
transcript_89545.known	chr4	-	2506	3	FSM	ENSMUSG00000049225.15	ENSMUST00000095144.10	2506	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	21.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTGCTATGTTTAATTC	487	False	NA	NA	False	AATAAA	-20	NA	11965927	11959806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11962234_11965613_11965649_11965883
transcript_89546.known	chr4	-	2588	3	FSM	ENSMUSG00000049225.15	ENSMUST00000108299.2	2588	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	3	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTGCTATGTTTAATTC	-13	True	NA	NA	False	AATAAA	-20	NA	11966427	11959806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11962234_11965613_11965649_11966301
transcript_89548.known	chr4	-	4201	2	FSM	ENSMUSG00000049225.15	ENSMUST00000108297.3	4201	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGAAATCTGGCTGTC	-38	True	NA	-7	True	AATAAA	-21	NA	11966452	11958183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_11962234_11966301
transcript_8955.nnic	chr10	+	2914	8	NNC	ENSMUSG00000019826.12	novel	2844	7	NA	NA	-48	-59	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_7	38.0542040907387	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCCAAAGTATGAAACTGG	NA	False	NA	-55	True	ATTAAA	-16	NA	41326330	41341511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41339957_41340039_41340272
transcript_89550.known	chr4	-	3533	29	FSM	ENSMUSG00000049488.15	ENSMUST00000131145.9	3533	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	12.8747399418951	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAAATTTTGGTTTGCG	23	True	NA	NA	False	AATAAA	-24	NA	12087938	12039362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_12039893_12040634_12040778_12043464_12043568_12045794_12045900_12046002_12046120_12047197_12047315_12047809_12047891_12051387_12051529_12053446_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12059787_12059896_12061754_12061861_12063034_12063159_12063673_12063831_12068867_12068934_12069413_12069492_12070236_12070346_12070448_12070604_12073893_12073957_12075454_12075526_12075622_12075693_12077335_12077436_12079874_12079969_12085911_12086001_12087714
transcript_89551.known	chr4	-	3456	28	FSM	ENSMUSG00000049488.15	ENSMUST00000050686.10	3456	28	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_10	5.81280927905584	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGCGTTATTGAT	4	True	NA	NA	False	AATAAA	-32	NA	12087957	12039354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_12039893_12040634_12040778_12043464_12043568_12045794_12045900_12046002_12046120_12047197_12047315_12047809_12047891_12051387_12051529_12053446_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12061754_12061861_12063034_12063159_12063673_12063831_12068867_12068934_12069413_12069492_12070236_12070346_12070448_12070604_12073893_12073957_12075454_12075530_12075622_12075693_12077335_12077436_12079874_12079969_12085911_12086001_12087714
transcript_8956.nnic	chr10	+	2976	8	NNC	ENSMUSG00000019826.12	novel	2844	7	NA	NA	-48	3	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_7	38.0542040907387	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATACTTGATCTTTATCAA	NA	False	NA	7	True	AATAAA	-19	NA	41326330	41341573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41339957_41340039_41340272
transcript_89560.known	chr4	+	3327	4	FSM	ENSMUSG00000052137.12	ENSMUST00000063839.6	3327	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	21.6692306175267	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATTGCTCTTGA	56	False	NA	-16	True	NA	NA	NA	12089440	12096243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_12089524_12089662_12089728_12092522_12092573_12093114
transcript_89562.nnic	chr4	+	3382	4	NNC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-71	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	14.4299072146089	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATTGCTCTTGA	NA	False	NA	-16	True	NA	NA	NA	12089367	12096243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_12089506_12089662_12089728_12092522_12092573_12093114
transcript_89566.known	chr4	+	2949	4	FSM	ENSMUSG00000046667.15	ENSMUST00000050069.9	2949	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	18.4089350286454	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATTAAAAATAAAAAATAT	-1	True	NA	NA	False	TATAAA	-20	NA	12140266	12146700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_12140402_12140540_12140606_12143409_12143460_12144001
transcript_89570.known	chr4	+	3069	3	FSM	ENSMUSG00000046667.15	ENSMUST00000069128.8	3069	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	12.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTGGAAGAGAATTTCCT	16	False	NA	NA	False	AATAAA	-18	NA	12140316	12146731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_12140606_12143409_12143460_12144001
transcript_89573.nnic	chr4	-	1318	8	NNC	ENSMUSG00000028218.20	novel	648	7	NA	NA	-9	52908	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	128.843204821098	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGATTACACAGTCTTTCT	-27	False	NA	NA	False	ATTAAA	-36	NA	12172024	12100500	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_12100753_12155648_12155769_12157650_12157765_12164087_12164193_12168228_12168325_12168964_12169034_12170983_12171219_12171697
transcript_89575.known	chr4	-	1292	8	FSM	ENSMUSG00000028218.20	ENSMUST00000087052.11	1292	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	133.555614037061	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTACATAGTCTTTCTTTC	2	True	NA	-42	True	ATTAAA	-39	NA	12171995	12153723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168228_12168325_12168964_12169034_12170983_12171219_12171697
transcript_8958.known	chr10	+	2844	7	FSM	ENSMUSG00000019826.12	ENSMUST00000080771.10	2844	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_6	14.3807355707403	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGATACTTGATCTTTAT	NA	False	NA	4	True	AATAAA	-16	NA	41326378	41341570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41340272
transcript_89583.nnic	chr4	+	368	2	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-52	-737	multi-exon	FALSE	canonical	3	4269	junction_1	0	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTTGGTGGTATTAAA	-4	True	NA	NA	False	AAGAAA	-2	NA	12232780	12233214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_+_12232839_12232904
transcript_89584.nnic	chr4	+	483	2	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-52	-622	multi-exon	FALSE	canonical	3	4269	junction_1	0	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGATTTGCTTTTGTAA	-4	True	NA	NA	False	NA	NA	NA	12232780	12233329	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_+_12232839_12232904
transcript_89585.known	chr4	+	3545	5	FSM	ENSMUSG00000055963.13	ENSMUST00000183345.2	3545	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.87082869338697	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGAATTTAGCATTTTTG	-3	True	NA	NA	False	AATAAA	-26	NA	12906857	12983553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_12906939_12917915_12918066_12962944_12963024_12974729_12974816_12980404
transcript_89587.known	chr4	+	5783	11	FSM	ENSMUSG00000006586.16	ENSMUST00000006761.10	5783	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.05182845286832	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTATTCTGTCTCCCTT	-16	True	NA	NA	False	AATAAA	-16	NA	13743435	13893649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_13743730_13835632_13835771_13837759_13838002_13841797_13841888_13846775_13846958_13859810_13860062_13865200_13865287_13865830_13866033_13875476_13875546_13881049_13881241_13889611
transcript_89590.known	chr4	-	3257	7	FSM	ENSMUSG00000040550.18	ENSMUST00000236953.2	3257	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGTGTATATTCAAATT	-2	True	NA	0	True	AATAAA	-19	NA	14826587	14809506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
transcript_89597.nic	chr4	-	2461	2	ISM	ENSMUSG00000040550.18	ENSMUST00000151012.3	2647	8	-155	13407	37	-13407	5prime_fragment	FALSE	canonical	3	328	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGATTCATAGAGTTGATG	-1	True	NA	NA	False	AAAAAG	-6	NA	14826550	14823452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_14825654_14826290
transcript_89598.known	chr4	+	2339	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAAGAGAAAATGATAAAT	21	False	NA	-79	True	NA	NA	NA	14864075	14915176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
transcript_89604.nic	chr4	-	773	5	ISM	ENSMUSG00000040536.16	ENSMUST00000108273.2	2135	14	574	97579	-89	58454	internal_fragment	FALSE	canonical	3	19	junction_2	1.4790199457749	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTTCATTTTTTATA	544	False	NA	NA	False	AATACA	-15	NA	15149220	15052507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
transcript_89605.known	chr4	+	740	6	FSM	ENSMUSG00000086587.8	ENSMUST00000152024.2	740	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	20.2445054273993	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGTGGGAAGACTGTAT	15	True	NA	NA	False	NA	NA	NA	14930675	14952905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_14930775_14936440_14936540_14938483_14938558_14942199_14942276_14947438_14947546_14952620
transcript_89606.known	chr4	+	4670	3	FSM	ENSMUSG00000043252.9	ENSMUST00000062684.9	4670	3	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_2	4.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTCTTCTCTTTCTTT	27	False	NA	18	True	AATAAA	-19	NA	15265830	15286753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_15266750_15281006_15281163_15283158
transcript_89609.known	chr4	-	2959	10	FSM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_6	12.6207745648706	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTTGTAGAGGTTGCAT	NA	False	NA	NA	False	ATTAAA	-19	NA	15945507	15917239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892_15933096_15945282
transcript_89612.known	chr4	+	2533	16	FSM	ENSMUSG00000028224.15	ENSMUST00000029879.15	2533	16	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	27.9629914152418	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	-45	True	NA	9	True	AATAAA	-15	NA	15957924	15992589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
transcript_89614.nnic	chr4	+	2457	16	NNC	ENSMUSG00000028224.15	novel	2533	16	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	canonical	3	34	junction_3	53.2213825032341	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	NA	False	NA	9	True	AATAAA	-15	NA	15957918	15992589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_15958111_15962310_15962445_15963771_15963921_15964328_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
transcript_89619.known	chr4	+	1752	11	FSM	ENSMUSG00000028224.15	ENSMUST00000149069.2	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	24.0407986556187	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGATGTTGATTTAGCT	-3	True	NA	NA	False	NA	NA	NA	15957966	15981554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306
transcript_89630.known	chr4	-	2658	6	FSM	ENSMUSG00000041153.10	ENSMUST00000037198.10	2658	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	19.0305018325844	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTGTGCCCTTTCCCATT	0	True	NA	NA	False	ATTAAA	-18	NA	16013888	15997120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_15999001_16001929_16002022_16005356_16005549_16006356_16006494_16008600_16008756_16013686
transcript_89639.nic	chr4	-	2546	6	NIC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	32.8852550545073	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTTGTGTGAACACTG	NA	False	NA	-4	True	AATAAA	-17	NA	16013911	15997226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013686
transcript_89644.nic	chr4	-	1857	6	NIC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	-23	-689	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	32.8852550545073	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTGCAGTGTATTGGCT	NA	False	NA	-6	True	ATTAAA	-15	NA	16013911	15997915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013686
transcript_89647.nnic	chr4	-	2850	12	NNC	ENSMUSG00000041135.16	novel	2804	12	NA	NA	-89	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_10	29.5707583951801	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTTTATCTTCTGGTAA	NA	False	NA	-8	True	AATAAA	-19	NA	16163736	16122740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_16123892_16124424_16124587_16127620_16127715_16129022_16129110_16132776_16132863_16138073_16138236_16139204_16139255_16151916_16152075_16155034_16155191_16157571_16157649_16158276_16158431_16163223
transcript_89650.nnic	chr4	-	2145	12	NNC	ENSMUSG00000041135.16	novel	2804	12	NA	NA	-18	-634	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_10	29.5707583951801	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTAGTTCAGTTTTT	NA	False	NA	-9	True	AGTAAA	-13	NA	16163665	16123374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_16123892_16124424_16124587_16127620_16127715_16129022_16129110_16132776_16132863_16138073_16138236_16139204_16139255_16151916_16152075_16155034_16155191_16157571_16157649_16158276_16158431_16163223
transcript_89651.known	chr4	-	2692	11	FSM	ENSMUSG00000041135.16	ENSMUST00000037035.12	2692	11	0	0	0	0	multi-exon	TRUE	canonical	3	70	junction_4	17.1373860317144	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCTGGTAATTAGCGTA	NA	False	NA	0	True	AATAAA	-27	NA	16163647	16122732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_16123892_16124424_16124587_16127620_16127715_16129022_16129110_16132776_16132863_16138073_16138236_16139204_16139255_16151916_16152075_16155034_16155191_16158276_16158431_16163223
transcript_89658.known	chr4	-	5648	16	FSM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	15.541199724889	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATAGCTGTGTTTGGTTT	-13	True	NA	-6	True	AATAAA	-15	NA	19570108	19519253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_19523295_19525002_19525240_19526283_19526418_19528059_19528112_19528187_19528243_19532398_19532533_19533054_19533115_19535211_19535299_19536526_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717_19553898_19555361_19555502_19570000
transcript_89661.nic	chr4	-	923	9	ISM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	-29	15999	-29	5359	5prime_fragment	FALSE	canonical	3	133	junction_4	14.7986485869487	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACAAGAACTCAGGTGTT	NA	False	NA	NA	False	CATAAA	-27	NA	19570137	19535252	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_19535299_19536526_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717_19553898_19555361_19555502_19570000
transcript_89662.nic	chr4	-	877	8	ISM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	-29	17273	-29	4085	5prime_fragment	FALSE	canonical	3	133	junction_3	15.8152600035406	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTATATCTTTGCAGC	NA	False	NA	NA	False	NA	NA	NA	19570137	19536526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717_19553898_19555361_19555502_19570000
transcript_89663.known	chr4	-	6440	25	FSM	ENSMUSG00000041058.16	ENSMUST00000108246.9	6440	25	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_17	21.4877225927324	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAACTATTGCTTGAAC	-30	True	NA	NA	False	NA	NA	NA	19708993	19608302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_19611814_19618284_19618358_19619155_19619253_19621927_19622033_19623101_19623223_19627632_19627774_19627871_19628006_19631045_19631206_19635253_19635343_19638604_19638677_19638774_19638851_19639951_19640081_19640194_19640280_19640360_19640416_19641733_19641909_19643365_19643462_19650115_19650441_19659562_19659748_19661965_19662033_19662121_19662260_19672418_19672544_19673155_19673295_19678344_19678436_19687790_19687887_19708838
transcript_89678.nic	chr4	-	780	5	ISM	ENSMUSG00000041058.16	ENSMUST00000108246.9	6440	25	-175	64117	-175	-62747	5prime_fragment	FALSE	canonical	3	179	junction_4	12.1937483982572	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAGTGGCTTTCGAATCT	8	False	NA	-1	True	NA	NA	NA	19709168	19672419	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_19672544_19673155_19673295_19678344_19678436_19687790_19687887_19708838
transcript_89680.nic	chr4	-	545	4	ISM	ENSMUSG00000041058.16	ENSMUST00000108246.9	6440	25	-175	64964	-175	-63594	5prime_fragment	FALSE	canonical	3	179	junction_3	13.6381816969859	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGGTTTGGAACAGCAA	8	False	NA	NA	False	AAAAAG	-7	NA	19709168	19673266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_19673295_19678344_19678436_19687790_19687887_19708838
transcript_89681.known	chr4	+	1734	10	FSM	ENSMUSG00000028229.12	ENSMUST00000029888.4	1734	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_9	10.5736686696625	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTGGATTTAAGGTATT	29	True	NA	NA	False	CATAAA	-17	NA	19575206	19606932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642_19602674_19605402_19605537_19606084
transcript_89686.known	chr4	+	3053	5	FSM	ENSMUSG00000073988.14	ENSMUST00000098244.2	3053	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	18.1934053986603	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATTAAAATCTATTAAA	5	True	NA	NA	False	AGTAAA	-10	NA	20008427	20030785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_20008644_20014630_20014785_20021191_20021386_20023784_20023896_20028407
transcript_89687.known	chr4	+	1965	9	FSM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_6	14.9080515158756	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACTGTTTTTGAAGATAA	-25	True	NA	NA	False	AATAAA	-20	NA	20042051	20066750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
transcript_89691.known	chr4	+	6003	18	FSM	ENSMUSG00000040455.18	ENSMUST00000065111.15	6003	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	7.72986837222362	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTAGTTCCCTGGCTTG	-8	True	NA	3	True	AATAAA	-16	NA	21776271	21837870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
transcript_89695.known	chr4	+	5861	17	FSM	ENSMUSG00000040455.18	ENSMUST00000040429.12	5861	17	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_12	7.05226027596827	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGTTCCCTGGCTTGCT	-8	True	NA	5	True	AATAAA	-18	NA	21776271	21837872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
transcript_8970.known	chr10	+	2476	2	FSM	ENSMUSG00000019826.12	ENSMUST00000216656.2	2476	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTTTAGACTCTTCAGT	NA	False	NA	NA	False	AATAAA	-16	NA	41326430	41329464	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_41326527_41327084
transcript_89701.known	chr4	+	3484	13	FSM	ENSMUSG00000028252.21	ENSMUST00000065928.11	3484	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	125.983023547707	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	-5	True	NA	NA	False	NA	NA	NA	21727700	21750546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482_21747577_21748136
transcript_89704.known	chr4	+	1406	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_11	64.4238290701982	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTTTTCTGGATTTT	-5	True	NA	12	True	AATAAA	-14	NA	21727754	21747962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
transcript_89705.known	chr4	+	3365	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	20	False	NA	NA	False	NA	NA	NA	21727725	21750546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
transcript_89715.known	chr4	+	818	8	FSM	ENSMUSG00000040455.18	ENSMUST00000148304.8	818	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	8.2931001564	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTTCACAGCATGAAGGA	1	True	NA	NA	False	NA	NA	NA	21776280	21798661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21776318_21780340_21780451_21781738_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604
transcript_89718.nnic	chr4	-	1491	4	NNC	ENSMUSG00000028251.6	novel	1588	4	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	127.017933991841	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	5193	False	NA	0	True	AATAAA	-24	NA	21767220	21757381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_21758476_21759369_21759425_21759622_21759794_21767049
transcript_89719.known	chr4	-	1588	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	27.288581250528	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	-17	True	NA	0	True	AATAAA	-24	NA	21767212	21757381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
transcript_89722.known	chr4	+	1453	12	FSM	ENSMUSG00000028252.21	ENSMUST00000120679.8	1453	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	132.289502216518	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGTTCCTGACTCCTG	20	False	NA	NA	False	AATAAA	-19	NA	21727725	21759922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21759424
transcript_89723.known	chr4	+	592	5	FSM	ENSMUSG00000040455.18	ENSMUST00000125262.2	592	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	2.77263412660235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACTTTGCCTGATAATC	9082	False	NA	NA	False	ATTAAA	-11	NA	21776260	21784840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692
transcript_89724.known	chr4	+	3977	19	FSM	ENSMUSG00000040455.18	ENSMUST00000108232.9	3977	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	9.19087711930816	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGTTCCCTGGCTTGCT	18	False	NA	5	True	AATAAA	-18	NA	21776297	21837872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234_21834572_21836573
transcript_89725.known	chr4	+	4545	12	FSM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_11	60.0897400518935	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGCTATGATACATACA	5	False	NA	18	True	AATAAA	-18	NA	21847582	21876475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
transcript_89727.nic	chr4	+	2159	11	ISM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	438	2188	-27	423	5prime_fragment	FALSE	canonical	3	310	junction_8	50.2622124463299	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAGAAAGAAAGACAAGGAA	443	False	NA	-53	True	AAAAAG	-29	NA	21848020	21874287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585
transcript_89728.nic	chr4	+	2223	11	ISM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	434	2128	-31	483	5prime_fragment	FALSE	canonical	3	310	junction_8	50.2622124463299	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAGAAAAAGATTTTAAA	439	False	NA	7	True	NA	NA	NA	21848016	21874347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585
transcript_89733.nic	chr4	+	1421	10	ISM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	434	4907	-31	226	5prime_fragment	FALSE	canonical	3	310	junction_8	52.97122442689	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGAACAGCAGCTGTT	439	False	NA	NA	False	AAAACA	-20	NA	21848016	21871568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437
transcript_89736.nic	chr4	+	2949	10	NIC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	-21	483	intron_retention	FALSE	canonical	3	402	junction_3	31.0876895964374	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAGAAAAAGATTTTAAA	449	False	NA	7	True	NA	NA	NA	21848026	21874347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21870406_21871437_21871609_21873585
transcript_89744.nic	chr4	+	3991	9	NIC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	-31	483	intron_retention	FALSE	canonical	3	402	junction_3	32.8785644455472	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAGAAAAAGATTTTAAA	439	False	NA	7	True	NA	NA	NA	21848016	21874347	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21871609_21873585
transcript_89749.known	chr4	+	2922	8	FSM	ENSMUSG00000028248.16	ENSMUST00000108229.2	2922	8	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_3	34.8401597971921	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATAAAGTTTCTCCTC	-1	True	NA	NA	False	NA	NA	NA	21848057	21871342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515
transcript_89754.nic	chr4	+	864	6	ISM	ENSMUSG00000028248.16	ENSMUST00000108229.2	2922	8	-41	9299	-31	0	5prime_fragment	FALSE	canonical	3	402	junction_3	41.0346195303429	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACGTGAAAAGCAGAAGAAG	439	False	NA	-9	True	NA	NA	NA	21848016	21862043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986
transcript_89755.nic	chr4	+	1407	6	ISM	ENSMUSG00000028248.16	ENSMUST00000108229.2	2922	8	-504	9219	-29	0	5prime_fragment	FALSE	canonical	3	402	junction_3	41.0346195303429	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAGATGCGGAAGGAGG	NA	False	NA	71	True	AAAAAG	-12	NA	21847553	21862123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986
transcript_89757.known	chr4	+	822	6	FSM	ENSMUSG00000028248.16	ENSMUST00000150368.8	822	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	174.396100873844	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAGATGCGGAAGGAGG	22	False	NA	71	True	AAAAAG	-12	NA	21848080	21862123	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860877_21860992_21861986
transcript_8976.known	chr10	+	3563	24	FSM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	27.5095446574272	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9093	False	NA	29	True	AATAAA	-18	NA	41352309	41363026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
transcript_89763.known	chr4	+	2651	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	443	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGCCATTGTGC	-10	True	NA	11	True	NA	NA	NA	21879672	21912162	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
transcript_89767.known	chr4	+	2627	6	FSM	ENSMUSG00000028246.14	ENSMUST00000029908.8	2627	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	4.02988833592198	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGAGATGCGTTGGGAAG	2	True	NA	NA	False	NA	NA	NA	21931330	21994751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21931830_21936632_21936769_21948691_21948889_21958443_21958668_21982385_21982503_21993297
transcript_89768.known	chr4	+	4465	5	FSM	ENSMUSG00000028246.14	ENSMUST00000123481.2	4465	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	3.56195171219375	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCCACTCTGTCTTTTAT	28	True	NA	NA	False	NA	NA	NA	21931356	21996839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21931830_21936632_21936769_21948691_21948889_21982385_21982503_21993297
transcript_89769.known	chr4	+	1603	4	FSM	ENSMUSG00000028246.14	ENSMUST00000124440.8	1603	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	6.16441400296898	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCATTATCAACCCTGC	0	True	NA	NA	False	NA	NA	NA	21931328	21994146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_21931830_21936632_21936769_21982385_21982503_21993297
transcript_89772.known	chr4	+	2570	10	FSM	ENSMUSG00000040410.15	ENSMUST00000184582.2	2570	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	25.9019995414816	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTTTGCACATCTTTC	34	True	NA	NA	False	AATAAA	-28	NA	22357615	22434075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433145_22433259_22433566
transcript_89776.known	chr4	+	2546	9	FSM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	14.7627063914446	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGTTAAGAATCTTT	NA	False	NA	NA	False	AATAAA	-44	NA	22357542	22434091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
transcript_89777.known	chr4	+	3641	9	FSM	ENSMUSG00000040410.15	ENSMUST00000185029.8	3641	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	23.5156198089695	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAATAAAGTTGATTTT	-22	True	NA	NA	False	AATAAA	-17	NA	22357559	22434064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22423928_22427149_22427463_22433566
transcript_89779.known	chr4	+	2478	9	FSM	ENSMUSG00000040410.15	ENSMUST00000184455.8	2478	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	22.7156333832011	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTCTTTGTTAAGAATC	-11	True	NA	NA	False	AATAAA	-41	NA	22357570	22434088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390713_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
transcript_89786.known	chr4	+	4478	24	FSM	ENSMUSG00000045751.17	ENSMUST00000108222.9	4478	24	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_15	74.8650203134992	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCTCTGTGAATATTTA	-16	True	NA	NA	False	ATTAAA	-23	NA	24496450	24602950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
transcript_89793.known	chr4	+	3224	17	FSM	ENSMUSG00000045751.17	ENSMUST00000173079.8	3224	17	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_15	87.5590648862241	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGTCATATCGTTAGTT	-16	True	NA	NA	False	AATAAA	-17	NA	24496450	24581338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101
transcript_89799.known	chr4	+	1350	5	FSM	ENSMUSG00000045751.17	ENSMUST00000138567.9	1350	5	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	29.9457843443781	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-5	True	NA	9	True	AATAAA	-18	NA	24496461	24503413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
transcript_898.known	chr1	+	5176	7	FSM	ENSMUSG00000026123.12	ENSMUST00000156687.8	5176	7	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	21.2733531808118	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34889056	34913037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380
transcript_89804.known	chr4	-	7143	11	FSM	ENSMUSG00000040387.17	ENSMUST00000108218.10	7143	11	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_4	2.76405499221705	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCTGTCTAATAAAACAT	NA	False	NA	NA	False	ATTAAA	-24	NA	24851124	24612553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_24617547_24626896_24626992_24629159_24629353_24632642_24632702_24649539_24650267_24682054_24682271_24708952_24709052_24743857_24743966_24792616_24792798_24800805_24800891_24850737
transcript_89806.known	chr4	-	2287	10	FSM	ENSMUSG00000040387.17	ENSMUST00000084781.6	2287	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	2.94811092476036	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGCAAAAAAAAAAAAAAAGA	9	True	NA	NA	False	NA	NA	NA	24851086	24617272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_24617547_24626896_24626992_24629159_24629353_24632642_24632702_24649539_24650267_24682054_24682271_24743857_24743966_24792616_24792798_24800805_24800891_24850737
transcript_89807.known	chr4	+	673	4	FSM	ENSMUSG00000028261.14	ENSMUST00000151249.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	218.397700435594	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTGCACATTAGCCCA	56	False	NA	-6	True	AATAAA	-7	NA	24898175	24903485	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_24898303_24898572_24898677_24901693_24901782_24903131
transcript_89808.known	chr4	+	3632	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	23.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGCCTGCCTACTTCT	-37	True	NA	NA	False	AATAAA	-16	NA	24898082	24905001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_24898303_24898572_24898677_24901693
transcript_89812.known	chr4	+	2358	2	FSM	ENSMUSG00000028261.14	ENSMUST00000146721.2	2358	2	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTGGTTTTTTCTTTC	11	True	NA	14	True	AATAAA	-27	NA	24898130	24903505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_24898677_24901693
transcript_89815.nic	chr4	-	3896	20	NIC	ENSMUSG00000040359.15	novel	5189	19	NA	NA	-31	0	combination_of_known_junctions	TRUE	canonical	3	78	junction_1	36.6180404503927	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTTATACAGTCTAT	-5	True	NA	-10	True	AATAAA	-19	NA	25281852	25248599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_25249970_25250425_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_89818.known	chr4	-	4316	19	FSM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_3	22.816024799564	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATTTTATGTTATACAG	-6	True	NA	-15	True	AATAAA	-14	NA	25281821	25248604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_89822.nic	chr4	-	1996	16	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	-31	3694	-31	-2152	5prime_fragment	FALSE	canonical	3	186	junction_1	19.4862914777429	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCAGTGCTAAGTGGT	-5	True	NA	NA	False	AAGAAA	-45	NA	25281852	25252298	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_89825.nic	chr4	-	1915	15	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	-31	5954	-31	-4412	5prime_fragment	FALSE	canonical	3	188	junction_2	18.7215089658709	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTAGTGAATTGTCTG	-5	True	NA	NA	False	NA	NA	NA	25281852	25254558	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_89826.nic	chr4	-	1442	12	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	-31	10670	-31	-9128	5prime_fragment	FALSE	canonical	3	188	junction_2	16.3489833383714	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAAGAAGAAGGGAAGAAAA	-5	True	NA	-2	True	TATAAA	-11	NA	25281852	25259274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_89827.nic	chr4	-	1354	11	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	-31	13626	-31	6918	5prime_fragment	FALSE	canonical	3	188	junction_1	17.1230838344032	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAACGCAGGAAGAAAGC	-5	True	NA	NA	False	AGTAAA	-13	NA	25281852	25262230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_89828.nic	chr4	-	959	9	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	-31	19206	-31	1338	5prime_fragment	FALSE	canonical	3	192	junction_3	15.6679409942723	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTATAAGAATACCCAACTC	-5	True	NA	NA	False	TATAAA	-6	NA	25281852	25267810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_89832.known	chr4	-	12134	3	FSM	ENSMUSG00000055373.9	ENSMUST00000084770.5	12134	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	8.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTTTGGTTCTGTACA	303	False	NA	0	True	AATAAA	-21	NA	25800146	25609331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_25620821_25709027_25709115_25799588
transcript_89836.known	chr4	-	1859	2	FSM	ENSMUSG00000055373.9	ENSMUST00000149875.2	1859	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGGAGATATTTGTATT	-29	True	NA	NA	False	ATTAAA	-17	NA	25799855	25797702	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_25799295_25799588
transcript_89837.known	chr4	-	4867	5	FSM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_4	9.33742469849155	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAAATCTATTCATTGTT	0	True	NA	-4	True	AATAAA	-25	NA	26346891	26324505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416_26340999_26346596
transcript_89844.nic	chr4	+	3737	17	NIC	ENSMUSG00000028289.13	novel	6746	17	NA	NA	-112	-2422	combination_of_known_junctions	FALSE	canonical	2	3	junction_7	5.85768725692999	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGATTTCAGACTATTC	202	False	NA	NA	False	AATGAA	-16	NA	28813018	28964393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660_28871997_28935703_28935829_28938595_28938765_28942585_28942695_28943322_28943379_28947527_28947654_28948597_28948784_28949328_28949391_28950358_28950569_28951262_28951413_28961288_28961483_28962409_28962566_28963888
transcript_89845.nic	chr4	+	4009	17	NIC	ENSMUSG00000028289.13	novel	6746	17	NA	NA	3	-2035	combination_of_known_junctions	FALSE	canonical	2	3	junction_7	5.85768725692999	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAATAATGATCCATAAATA	3	True	NA	NA	False	NA	NA	NA	28813133	28964780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660_28871997_28935703_28935829_28938595_28938765_28942585_28942695_28943322_28943379_28947527_28947654_28948597_28948784_28949328_28949391_28950358_28950569_28951262_28951413_28961288_28961483_28962409_28962566_28963888
transcript_89846.known	chr4	+	6615	17	FSM	ENSMUSG00000028289.13	ENSMUST00000108191.2	6615	17	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_9	6.28987281270456	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAAAGAAAATCCTGTCT	86	False	NA	NA	False	NA	NA	NA	28813249	28967499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660_28871997_28935703_28935829_28938595_28938780_28942585_28942695_28943322_28943379_28947539_28947654_28948597_28948784_28949328_28949391_28950358_28950569_28951262_28951413_28961288_28961483_28962409_28962566_28963888
transcript_89857.known	chr4	+	5773	17	FSM	ENSMUSG00000028284.14	ENSMUST00000037607.11	5773	17	0	0	0	0	multi-exon	TRUE	canonical	3	147	junction_6	19.7680890262564	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACAGTTTACTGAGTTT	-24	True	NA	22	True	NA	NA	NA	31964096	32023467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_31964383_31974822_31974934_31977323_31977390_31978430_31978477_31979735_31979875_31981457_31981583_31985685_31985815_31988588_31988720_31989933_31990016_31991712_31991844_31992386_31992517_31994873_31994955_32002088_32002154_32010315_32010422_32015938_32016001_32017036_32017153_32019500
transcript_89861.known	chr4	+	5669	16	FSM	ENSMUSG00000028284.14	ENSMUST00000080933.13	5669	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_11	45.1522855333912	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACAGTTTACTGAGTTT	-1	True	NA	22	True	NA	NA	NA	31964119	32023467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_31964383_31974822_31974934_31977323_31977390_31978430_31978477_31979735_31979875_31981457_31981583_31985685_31985815_31988588_31988720_31989933_31990016_31991712_31991844_31992386_31992517_32002088_32002154_32010315_32010422_32015938_32016001_32017036_32017153_32019500
transcript_89865.known	chr4	+	8882	7	FSM	ENSMUSG00000040270.17	ENSMUST00000108180.9	8882	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.23608130649127	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTCAAAGCTCCCCAAT	46	False	NA	NA	False	AATAAA	-15	NA	32238803	32586104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_32239090_32317197_32317305_32417434_32417584_32501612_32501868_32561777_32563368_32575239_32575447_32579816
transcript_89872.nic	chr4	+	3551	8	ISM	ENSMUSG00000028282.13	ENSMUST00000178925.8	6557	11	-44	8878	-22	4886	5prime_fragment	FALSE	canonical	3	150	junction_1	35.729139768142	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAGAGAGAACCCAACA	-20	True	NA	NA	False	NA	NA	NA	32615428	32644387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539
transcript_89873.known	chr4	+	595	7	FSM	ENSMUSG00000028282.13	ENSMUST00000127619.2	595	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	91.4702440991362	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACACTGCACAGCCAAACT	21	False	NA	NA	False	NA	NA	NA	32615469	32639501	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631815_32631881_32634767_32634884_32639363
transcript_89879.known	chr4	+	6799	11	FSM	ENSMUSG00000028282.13	ENSMUST00000029950.10	6799	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	76.4659401302305	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTAGTATGCTTCTT	-5	True	NA	7	True	AATAAA	-20	NA	32615477	32653265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_32615740_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
transcript_89887.nic	chr4	+	2814	19	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	8	88783	8	6855	5prime_fragment	TRUE	canonical	2	9	junction_6	3.41565025531987	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAACTTTGTTTTCTTA	-10	True	NA	NA	False	AAGAAA	-25	NA	32657126	32686424	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_32657353_32662832_32663060_32666392_32666618_32667090_32667199_32667271_32667465_32668798_32669042_32669462_32669595_32670566_32670671_32671515_32671631_32672830_32673016_32673953_32674036_32674930_32675027_32676741_32676855_32678298_32678448_32679530_32679592_32683542_32683755_32684638_32684740_32685658_32685804_32686327
transcript_89889.known	chr4	+	1508	2	FSM	ENSMUSG00000058006.13	ENSMUST00000151626.2	1508	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGAAGGCGGCTAAGG	46	False	NA	NA	False	AAAAAG	-3	NA	32657182	32664170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_32657353_32662832
transcript_89890.known	chr4	+	465	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_2	3	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTGGAATCCTCAATTG	-15	True	NA	22	True	ATTAAA	-22	NA	32800252	32801383	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_32800336_32800609_32800751_32801142
transcript_89893.known	chr4	-	4444	16	FSM	ENSMUSG00000040183.14	ENSMUST00000084750.8	4444	16	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_10	6.1369554521947	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAGTATTCTACTTTTTA	13	True	NA	-7	True	ATTAAA	-16	NA	32950826	32804034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_32806643_32808683_32808811_32810197_32810312_32815234_32815388_32816910_32817097_32817418_32817551_32818604_32818710_32821256_32821335_32822152_32822252_32823405_32823505_32824395_32824495_32827088_32827188_32828709_32828809_32836334_32836434_32860321_32860589_32950746
transcript_89901.known	chr4	+	345	1	FSM	ENSMUSG00000094344.2	ENSMUST00000180255.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTTTTGTTAAGTTGGC	38	False	NA	-6	True	NA	NA	NA	32964887	32965232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_32964900_32965200
transcript_89902.known	chr4	+	5008	7	FSM	ENSMUSG00000028278.15	ENSMUST00000098190.10	5008	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	9.38823140367177	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGAAGTGGGGTCTCT	13	True	NA	4	True	AATAAA	-19	NA	32983036	33022180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646
transcript_89905.known	chr4	+	3530	8	FSM	ENSMUSG00000028277.14	ENSMUST00000124992.8	3530	8	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	15.4813910675932	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTACTGGTGTTACTA	-32	True	NA	28	True	AATAAA	-38	NA	33031415	33052363	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_33031617_33036708_33036783_33038198_33038331_33040732_33040818_33041355_33041462_33043856_33043987_33045079_33045200_33049681
transcript_89908.nic	chr4	+	1948	6	ISM	ENSMUSG00000028280.10	ENSMUST00000029947.6	2286	10	19746	0	19746	0	3prime_fragment	FALSE	canonical	3	14	junction_2	4.22374241638857	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGATGTCATCACTGACT	NA	False	NA	8	True	AATAAA	-15	NA	33152266	33163588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_33152637_33157059_33157143_33158036_33158178_33160116_33160270_33161629_33161827_33162584
transcript_89912.known	chr4	-	1445	7	FSM	ENSMUSG00000054659.14	ENSMUST00000098181.9	1445	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.71558280160133	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTAAGTGAGGACAGATA	-1	True	NA	NA	False	NA	NA	NA	33189433	33174229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_33174481_33174743_33174852_33179204_33179341_33181704_33181860_33183076_33183220_33187047_33187197_33188930
transcript_89915.known	chr4	-	1339	4	FSM	ENSMUSG00000054659.14	ENSMUST00000119167.2	1339	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTTGTGCTGATTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	33189737	33181619	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_33181860_33183076_33183220_33187047_33187197_33188930
transcript_89916.known	chr4	+	829	5	FSM	ENSMUSG00000054679.9	ENSMUST00000108159.2	829	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTCCTCCCAGCAGAGC	-27	True	NA	NA	False	CATAAA	-13	NA	33209262	33231293	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_33209371_33223567_33223673_33225764_33225869_33226027_33226170_33230923
transcript_89919.known	chr4	-	1648	2	FSM	ENSMUSG00000040128.10	ENSMUST00000049357.10	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	0	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGGCTTTTTGTGTGTG	-1	True	NA	2	True	TTTAAA	-38	NA	33248510	33245422	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_33246508_33247947
transcript_8992.nnic	chr10	+	3434	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_3	52.4446973581861	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9083	False	NA	29	True	AATAAA	-18	NA	41352299	41363026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
transcript_89921.known	chr4	+	4157	16	FSM	ENSMUSG00000028274.18	ENSMUST00000108153.9	4157	16	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_12	34.6965256025569	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTTTCCTGTCTCG	-36	True	NA	11	True	AATAAA	-18	NA	33310310	33502614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
transcript_89928.nic	chr4	+	789	6	ISM	ENSMUSG00000028274.18	ENSMUST00000029942.8	2379	16	-56	169916	-39	4960	5prime_fragment	TRUE	canonical	3	283	junction_5	17.7718879132184	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAGGATGAAGATGGAAA	NA	False	NA	NA	False	NA	NA	NA	33310271	33330998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841
transcript_89929.nnic	chr4	+	1298	6	NNC	ENSMUSG00000028291.8	novel	1397	5	NA	NA	-373	-340	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	311.730396336321	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGATGAAGTTAGTGTGAT	NA	False	NA	16	True	AATAAA	-17	NA	34550563	34566568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_34550778_34550909_34551274_34562311_34562456_34565127_34565278_34565933_34566006_34566214
transcript_89930.nnic	chr4	+	1638	6	NNC	ENSMUSG00000028291.8	novel	1397	5	NA	NA	-373	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	311.730396336321	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTGTTTCCGAATTG	NA	False	NA	13	True	AATAAA	-14	NA	34550563	34566908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_34550778_34550909_34551274_34562311_34562456_34565127_34565278_34565933_34566006_34566214
transcript_89934.known	chr4	+	1397	5	FSM	ENSMUSG00000028291.8	ENSMUST00000084299.6	1397	5	0	0	0	0	multi-exon	FALSE	canonical	3	720	junction_1	39.7138200126858	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTGTTTCCGAATTG	-2	True	NA	13	True	AATAAA	-14	NA	34550936	34566908	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_34551274_34562311_34562456_34565127_34565278_34565933_34566006_34566214
transcript_89942.known	chr4	+	781	2	FSM	ENSMUSG00000028291.8	ENSMUST00000132230.2	781	2	0	0	0	0	multi-exon	FALSE	canonical	3	720	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGACCAAAAGAGGATGTCA	12	False	NA	NA	False	NA	NA	NA	34550950	34562769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_34551274_34562311
transcript_8995.nnic	chr10	+	3375	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	71	junction_2	35.4241128130973	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9073	False	NA	29	True	AATAAA	-18	NA	41352289	41363026	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
transcript_89952.known	chr4	-	2266	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	-5	True	NA	-17	True	CATAAA	-21	NA	34614913	34570795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
transcript_89953.known	chr4	-	2300	20	FSM	ENSMUSG00000040044.12	ENSMUST00000048706.10	2300	20	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_6	85.9268193438375	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	NA	False	NA	-17	True	CATAAA	-21	NA	34614944	34570795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
transcript_89970.nnic	chr4	+	2006	21	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	-39	0	at_least_one_novel_splicesite	TRUE	canonical	3	83	junction_9	178.38710715744	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGTGTAGTAGTGTG	NA	False	NA	8	True	AATAGA	-23	NA	34614917	34660163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34640873_34640977_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
transcript_89976.known	chr4	+	1843	20	FSM	ENSMUSG00000028292.15	ENSMUST00000142045.8	1843	20	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	142.027152021567	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGTGTAGTAGTGTG	5	True	NA	8	True	AATAGA	-23	NA	34614973	34660163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630476_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
transcript_89979.nic	chr4	+	2336	19	ISM	ENSMUSG00000028292.15	ENSMUST00000029968.14	1868	20	-39	0	-39	0	intron_retention	FALSE	canonical	3	576	junction_1	52.339495980628	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTAGTAGTGTGTTTT	NA	False	NA	12	True	AATAGA	-27	NA	34614917	34660167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490
transcript_89990.known	chr4	+	434	2	FSM	ENSMUSG00000028292.15	ENSMUST00000149620.2	434	2	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTCTTTGGTTGTGT	-8	True	NA	NA	False	NA	NA	NA	34614960	34618921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_34615027_34618553
transcript_89994.known	chr4	-	2039	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	-21	True	NA	-13	True	AATAAA	-14	NA	34687438	34663256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
transcript_89995.known	chr4	-	1688	11	FSM	ENSMUSG00000028294.16	ENSMUST00000108136.8	1688	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.88679622641132	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTACTGTGTATTTTTT	16	True	NA	NA	False	ATTAAA	-15	NA	34730178	34711331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730059
transcript_89997.known	chr4	-	892	4	FSM	ENSMUSG00000028295.15	ENSMUST00000108131.8	892	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	75.9780670105963	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	2	True	NA	NA	False	AATAAA	-6	NA	34778349	34768663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_34769148_34771257_34771415_34771873_34772054_34778278
transcript_89999.known	chr4	-	782	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	76	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	-13	True	NA	NA	False	AATAAA	-6	NA	34778364	34768663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_34769148_34771257_34771415_34778223
transcript_9.known	ERCC-00025	+	1978	1	FSM	ERCC-00025A	DQ883689	1978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1978	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_ERCC-00025_+_0_2000
transcript_90.known	SIRV2	-	740	3	FSM	SIRV2A	SIRV204	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_1	198	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTATCCTATATCGGA	NA	False	NA	NA	False	NA	NA	NA	4732	3643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV2_-_3826_3966_4480_4687
transcript_90000.known	chr4	-	786	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	5.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	34778423	34768663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_34769148_34771257_34771415_34778278
transcript_90004.nnic	chr4	-	1803	9	NNC	ENSMUSG00000039967.15	novel	9986	8	NA	NA	11	-8394	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_8	58.5062763727106	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGATAAAAGAATTAAAAGA	-8	True	NA	NA	False	AAGAAA	-1	NA	34882949	34811506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34847810_34848033_34882757
transcript_90005.known	chr4	-	9986	8	FSM	ENSMUSG00000039967.15	ENSMUST00000047950.6	9986	8	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	23.430313524081	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATAATGTTTTGTTCAT	-19	True	NA	5	True	AATAAA	-37	NA	34882960	34803112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34882757
transcript_90009.known	chr4	-	6030	4	FSM	ENSMUSG00000073910.11	ENSMUST00000102975.10	6030	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	2.86744175568088	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTAGTCTGTCGTCTTT	-32	True	NA	NA	False	AATAAA	-16	NA	35157484	34949073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_34954048_34985915_34986119_35083769_35084390_35157251
transcript_90011.known	chr4	-	1023	2	FSM	ENSMUSG00000073910.11	ENSMUST00000155725.2	1023	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAAAAAATCT	-32	True	NA	NA	False	NA	NA	NA	35157484	35083599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_35084390_35157251
transcript_90012.known	chr4	-	3193	11	FSM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_8	10.8355895086516	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	NA	False	NA	-5	True	AATAAA	-16	NA	35225880	35191286	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
transcript_90016.known	chr4	+	3832	21	FSM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	0	0	0	0	multi-exon	TRUE	canonical	3	234	junction_5	35.2306684580353	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGGCTTTGGAGTTGA	-13	True	NA	9	True	ATTAAA	-17	NA	40143080	40198338	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
transcript_90020.known	chr4	-	3874	18	FSM	ENSMUSG00000040296.16	ENSMUST00000037907.13	3874	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	34.3834473735139	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTCCAATTCATTCCCT	-23	True	NA	-10	True	AATAAA	-22	NA	40239828	40204848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398_40220504_40222034_40222198_40223797_40224057_40225039_40225194_40225597_40225706_40226596_40226720_40227965_40228114_40229494_40229677_40235247_40235383_40239590
transcript_90021.known	chr4	-	3533	9	FSM	ENSMUSG00000040296.16	ENSMUST00000137903.8	3533	9	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	6.68487097856047	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATATGGGTGTTTTTT	-9	True	NA	NA	False	NA	NA	NA	40220600	40203776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398
transcript_90025.known	chr4	-	659	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTAGCTACTTTTTTCT	-10	True	NA	63	True	AGTAAA	-20	NA	40279421	40270590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
transcript_90027.known	chr4	-	3856	3	FSM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	19	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTGCAACATTGATT	9561	False	NA	0	True	AATAAA	-28	NA	40269850	40259600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40263082_40268303_40268502_40269673
transcript_90034.known	chr4	-	480	3	FSM	ENSMUSG00000071014.11	ENSMUST00000108108.3	480	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1267.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCACTGTCCGTGTTACT	2	True	NA	-11	True	AATAAA	-17	NA	40279409	40270664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40270848_40272809_40272855_40279157
transcript_90035.known	chr4	+	1044	2	FSM	ENSMUSG00000028407.5	ENSMUST00000129758.3	1044	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGATACTTTCTTTACA	-1	True	NA	NA	False	AATAAA	-6	NA	40269578	40270940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_40269720_40270037
transcript_90039.known	chr4	-	1378	8	FSM	ENSMUSG00000028411.16	ENSMUST00000129021.9	1378	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	41.4453168128111	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGGATTGTGTAGTAT	21	False	NA	-8	True	AATATA	-17	NA	40703187	40686241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695419_40697216_40697354_40703136
transcript_90042.known	chr4	-	2391	7	FSM	ENSMUSG00000028411.16	ENSMUST00000108103.9	2391	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	56.8812115045225	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATATAAATTATGAC	8	True	NA	NA	False	TTTAAA	-20	NA	40703162	40684923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40695376_40695424_40697216_40697354_40703136
transcript_90044.known	chr4	-	2418	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	402	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTCCATGTTGATGTCC	8535	False	NA	61	True	ACTAAA	-34	NA	40757923	40736541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
transcript_90047.known	chr4	+	3376	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	0	0	0	0	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGCTGTTCAGCATTTT	-7	True	NA	NA	False	ATTAAA	-13	NA	40722479	40734964	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
transcript_90050.known	chr4	+	5622	9	FSM	ENSMUSG00000028410.14	ENSMUST00000164233.8	5622	9	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	940.162278213182	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAATCAATCCGAAGCT	-35	True	NA	NA	False	ATTAAA	-9	NA	40722921	40737149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
transcript_90063.nic	chr4	+	834	5	ISM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	-46	6800	-46	0	5prime_fragment	FALSE	canonical	3	1814	junction_2	420.619483619102	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTCATATTGATAAAGG	1290	False	NA	NA	False	AAGAAA	-26	NA	40722433	40728164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955
transcript_90065.known	chr4	+	826	5	FSM	ENSMUSG00000028410.14	ENSMUST00000125442.8	826	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	1104.9410617766	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTCATATTGATAAAGG	-12	True	NA	NA	False	AAGAAA	-26	NA	40722944	40728164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955
transcript_90070.nic	chr4	+	391	3	ISM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	-46	10943	-46	-90	5prime_fragment	FALSE	canonical	3	1814	junction_2	455	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAACTATATGATAAAGGA	1290	False	NA	NA	False	TTTAAA	-44	NA	40722433	40724021	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_40722634_40723702_40723845_40723972
transcript_90075.known	chr4	-	3983	6	FSM	ENSMUSG00000028413.14	ENSMUST00000030121.13	3983	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	16.0872620417522	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTCTTTTCTTTTTTG	-20	True	NA	-1	True	AATAAA	-18	NA	40854005	40804601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40807318_40807732_40807838_40809678_40809802_40812684_40812873_40823438_40823675_40853390
transcript_90086.known	chr4	-	1295	7	FSM	ENSMUSG00000028416.14	ENSMUST00000030125.5	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	1821	junction_3	173.811599791907	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTGGCTCTGTGGTGG	3	True	NA	-9	True	AAAAAG	-37	NA	40948243	40936400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721
transcript_90091.nic	chr4	-	1112	6	ISM	ENSMUSG00000028416.14	ENSMUST00000191273.7	1348	7	-68	759	-68	-757	5prime_fragment	FALSE	canonical	3	1821	junction_2	185.918907053586	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAATTTGGTGAAAAAG	NA	False	NA	NA	False	TTTAAA	-17	NA	40948362	40937157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721
transcript_90099.known	chr4	+	1519	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	379	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATTGTAGTATCGCTTT	0	True	NA	14	True	AATAAA	-16	NA	40948406	40965303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
transcript_901.known	chr1	+	566	2	FSM	ENSMUSG00000102531.2	ENSMUST00000194261.2	566	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATCCTTTGTCAGCAT	NA	False	NA	NA	False	NA	NA	NA	35918925	35920200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_35919054_35919762
transcript_90104.known	chr4	+	4594	24	FSM	ENSMUSG00000028423.16	ENSMUST00000098143.11	4594	24	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_17	193.960434840598	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATTTTGTTTATTGAG	6045	False	NA	34	True	ATTAAA	-19	NA	40970905	41025993	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
transcript_90116.known	chr4	+	3617	16	FSM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_15	162.820473733086	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	6045	False	NA	16	True	NA	NA	NA	40970905	41012608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41011526
transcript_90118.nnic	chr4	+	3377	16	NNC	ENSMUSG00000028423.16	novel	3617	16	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_15	149.55756974044	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	-31	True	NA	16	True	NA	NA	NA	40970960	41012608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41011711
transcript_90119.known	chr4	+	4349	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGCCTCTTCATTTTT	6045	False	NA	NA	False	AATAAA	-15	NA	40970905	41013871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
transcript_90132.nic	chr4	+	500	2	ISM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	-20	35930	-20	-35491	5prime_fragment	FALSE	canonical	3	562	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAAGGGCTCTCTGAGCA	6025	False	NA	NA	False	AAGAAA	-1	NA	40970885	40976678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_40971060_40976352
transcript_90134.known	chr4	-	1765	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	659	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	-4	True	AATAAA	-21	NA	41098183	41092721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
transcript_90142.known	chr4	-	4599	26	FSM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_9	34.7585960591046	506	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	NA	False	NA	-4	True	NA	NA	NA	41124455	41114426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
transcript_90167.known	chr4	+	3600	5	FSM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_4	37.5857353260516	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGTATTGCTATTTCCC	7	False	NA	NA	False	AATAAA	-17	NA	41135742	41193380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_41136247_41174040_41174128_41183244_41183343_41189151_41189287_41190604
transcript_90173.known	chr4	-	4368	29	FSM	ENSMUSG00000028433.15	ENSMUST00000030143.13	4368	29	0	0	0	0	multi-exon	TRUE	canonical	3	748	junction_17	84.4073804080362	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGGTCTCCGTGTTCT	218	False	NA	-6	True	AATAAA	-12	NA	41275135	41194315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
transcript_90197.nic	chr4	-	474	5	ISM	ENSMUSG00000028433.15	ENSMUST00000030143.13	4368	29	16	35465	-3	-8189	5prime_fragment	FALSE	canonical	3	926	junction_4	58.8488530049652	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGAGAAGAGGACGGAGA	234	False	NA	NA	False	AAGAAA	-2	NA	41275119	41229780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
transcript_90200.known	chr4	-	3442	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTGAGTGACTATATA	1860	False	NA	0	True	AATAAA	-18	NA	41314889	41291299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
transcript_90218.known	chr4	+	3456	7	FSM	ENSMUSG00000028437.15	ENSMUST00000072866.12	3456	7	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_5	24.6981780704569	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAGTTCTTAAATGTATG	NA	False	NA	NA	False	AATATA	-14	NA	41348995	41390525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41387174_41387358_41388095_41388198_41388680
transcript_90221.known	chr4	+	2514	6	FSM	ENSMUSG00000028437.15	ENSMUST00000108060.10	2514	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	125.151108664686	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGCTGCCTTAACCTC	NA	False	NA	5	True	AATAAA	-14	NA	41348995	41389766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41388095_41388198_41388680
transcript_90225.known	chr4	-	5593	13	FSM	ENSMUSG00000028438.17	ENSMUST00000108055.9	5593	13	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_12	8.49632273398321	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTACTCCAGGCTTTCT	14	True	NA	NA	False	NA	NA	NA	41464840	41390744	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41392253_41392877_41392972_41393437_41395664_41397546_41397657_41400436_41400509_41403789_41403896_41404676_41404799_41409731_41409820_41413828_41414045_41414901_41415000_41423451_41423636_41428344_41428983_41464709
transcript_90228.known	chr4	+	845	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	26.5	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGATGCTTTCTTGGAC	4	True	NA	32	True	AATAAA	-28	NA	41465150	41480926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_41465181_41477513_41477648_41480245
transcript_9023.known	chr10	-	1602	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTCTACCTTGTTCCTT	NA	False	NA	0	True	AATAAA	-20	NA	41366336	41363167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
transcript_90231.known	chr4	-	4173	2	FSM	ENSMUSG00000046312.5	ENSMUST00000054920.5	4173	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATTTGTTGTTTTCTTGCT	8	True	NA	-2	True	NA	NA	NA	41503076	41495603	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41499691_41502990
transcript_90232.known	chr4	-	1269	2	FSM	ENSMUSG00000028445.8	ENSMUST00000127306.2	1269	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGCCTTTATTTGTGC	9	True	NA	-1	True	AATAAA	-18	NA	41640324	41638143	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41639002_41639913
transcript_90234.known	chr4	+	2009	13	FSM	ENSMUSG00000073889.11	ENSMUST00000098132.11	2009	13	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	3.12138680005467	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCGTCTAATGTTGCT	3938	False	NA	4	True	AATAAA	-20	NA	41760195	41769474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_41760552_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
transcript_90235.known	chr4	+	1768	13	FSM	ENSMUSG00000073889.11	ENSMUST00000108042.3	1768	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.0714111667687	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCGTCTAATGTTGCT	1803	False	NA	4	True	AATAAA	-20	NA	41762308	41769474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_41762424_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
transcript_90237.known	chr4	+	1595	11	FSM	ENSMUSG00000036073.19	ENSMUST00000084695.12	1595	11	0	0	0	0	multi-exon	FALSE	canonical	2	236	junction_6	31.3438989278615	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	-11	True	NA	32	True	AATAAA	-33	NA	41755227	41758695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
transcript_90248.known	chr4	-	973	7	FSM	ENSMUSG00000028447.12	ENSMUST00000030158.11	973	7	0	0	0	0	multi-exon	FALSE	canonical	3	869	junction_5	34.1829229619443	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGTGGGGCATTGTAT	-16	True	NA	NA	False	GATAAA	-22	NA	41723170	41714797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
transcript_90250.known	chr4	-	885	6	FSM	ENSMUSG00000028447.12	ENSMUST00000171641.2	885	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	342.598657323697	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGTGGGGCATTGTAT	-9	True	NA	NA	False	GATAAA	-22	NA	41723163	41714797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41715239_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
transcript_90252.known	chr4	-	590	6	FSM	ENSMUSG00000073888.14	ENSMUST00000108037.9	590	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	16.7020956768904	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	28	False	NA	5	True	AATAAA	-28	NA	41774142	41769466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735_41773804_41774099
transcript_90258.known	chr4	-	1640	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3747	False	NA	NA	False	AATAAA	-17	NA	41741359	41738492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
transcript_90259.nic	chr4	-	1629	4	NIC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	247.10906274131	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3711	False	NA	NA	False	AATAAA	-17	NA	41741395	41738492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_41739581_41740549_41740643_41740822_41740977_41741101
transcript_90261.known	chr4	-	556	4	FSM	ENSMUSG00000073888.14	ENSMUST00000136768.8	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	19.3045763140937	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	569	False	NA	5	True	AATAAA	-28	NA	41773601	41769466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464
transcript_90264.known	chr4	-	468	3	FSM	ENSMUSG00000036078.17	ENSMUST00000146655.2	468	3	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_2	229.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTTCCACCAATGGAAAG	3	True	NA	NA	False	NA	NA	NA	41741320	41740602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41740643_41740775_41740977_41741093
transcript_90265.known	chr4	-	613	2	FSM	ENSMUSG00000036078.17	ENSMUST00000142840.2	613	2	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTCCCTGGTAAGCCACA	3920	False	NA	NA	False	NA	NA	NA	41741186	41740448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41740977_41741101
transcript_90266.known	chr4	-	856	2	FSM	ENSMUSG00000036114.4	ENSMUST00000038434.4	856	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	9620	False	NA	-17	True	AATAAA	-14	NA	41713534	41712032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41712815_41713460
transcript_90267.known	chr4	-	1547	3	FSM	ENSMUSG00000036078.17	ENSMUST00000071561.7	1547	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	290.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3747	False	NA	NA	False	AATAAA	-17	NA	41741359	41738492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41739581_41740775_41740977_41741101
transcript_90268.known	chr4	-	552	4	FSM	ENSMUSG00000073888.14	ENSMUST00000138337.8	552	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	40.1192666378083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	633	False	NA	5	True	AATAAA	-28	NA	41773537	41769466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771296_41773464
transcript_90269.known	chr4	-	350	4	FSM	ENSMUSG00000073888.14	ENSMUST00000108032.3	350	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	26.6124448749494	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTGCCTCCCTGACTT	12	False	NA	NA	False	ATTAAA	-14	NA	41774158	41773187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_41773351_41773464_41773525_41773735_41773804_41774099
transcript_90270.nic	chr4	+	2675	5	NIC	ENSMUSG00000036052.15	novel	3302	4	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	12.7549010188241	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCTGCGCAGAAGCAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	42949858	42958732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_42950005_42950475_42950743_42953140_42953386_42956525_42957128_42957317
transcript_90272.known	chr4	+	3291	5	FSM	ENSMUSG00000036052.15	ENSMUST00000037872.10	3291	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13.4721935853075	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGGGGTTGTCTGTCC	NA	False	NA	NA	False	ATTAAA	-29	NA	42949813	42959425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_42950005_42950798_42950944_42953140_42953386_42956525_42957128_42957317
transcript_90273.known	chr4	+	3093	4	FSM	ENSMUSG00000036052.15	ENSMUST00000098112.9	3093	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.32049379893857	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGGGGTTGTCTGTCC	-26	True	NA	NA	False	ATTAAA	-29	NA	42949866	42959425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_42950005_42953140_42953386_42956525_42957128_42957317
transcript_90274.known	chr4	+	3302	4	FSM	ENSMUSG00000036052.15	ENSMUST00000084662.12	3302	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	12.4721912892465	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGGGGTTGTCTGTCC	-12	True	NA	NA	False	ATTAAA	-29	NA	42950395	42959425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_42950743_42953140_42953386_42956525_42957128_42957317
transcript_90283.known	chr4	-	3316	17	FSM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	0	0	0	0	multi-exon	FALSE	canonical	2	1390	junction_12	381.614124271823	1419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	10011	False	NA	-15	True	AATAAA	-18	NA	43000507	42979962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
transcript_903.known	chr1	+	3719	2	FSM	ENSMUSG00000045216.8	ENSMUST00000088174.4	3719	2	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGCTGTGGTCTGTGG	1763	False	NA	20	True	AATAAA	-15	NA	36107480	36145527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36108266_36142593
transcript_90342.nic	chr4	-	2923	15	NIC	ENSMUSG00000028453.11	novel	2974	14	NA	NA	-84	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_14	28.3574127371109	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	NA	False	NA	-6	True	ATTAAA	-16	NA	43010590	43002342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001_43010173_43010255
transcript_90349.nnic	chr4	-	2681	14	NNC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-64	0	intron_retention	FALSE	canonical	3	6	junction_5	34.1794775616968	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	232	False	NA	-6	True	ATTAAA	-16	NA	43010286	43002342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005009_43005206_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001
transcript_90355.nnic	chr4	-	2585	14	NNC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-52	0	intron_retention	FALSE	canonical	1	3	junction_7	35.0747300259109	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	244	False	NA	-6	True	ATTAAA	-16	NA	43010274	43002342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006509_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001
transcript_90362.known	chr4	-	2771	14	FSM	ENSMUSG00000028453.11	ENSMUST00000030165.5	2771	14	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_11	17.9578731229673	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	163	False	NA	-6	True	ATTAAA	-16	NA	43010355	43002342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001
transcript_90375.nnic	chr4	-	2852	13	NIC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-62	0	intron_retention	FALSE	canonical	0	0	junction_11	36.250191570375	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	NA	False	NA	-6	True	ATTAAA	-16	NA	43010568	43002342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009706_43009801_43010001
transcript_90376.nic	chr4	-	2924	13	NIC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-52	0	intron_retention	FALSE	canonical	3	92	junction_5	14.74482018277	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	244	False	NA	-6	True	ATTAAA	-16	NA	43010274	43002342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43009280_43009706_43009801_43010001
transcript_9038.known	chr10	+	3292	23	FSM	ENSMUSG00000019823.18	ENSMUST00000099934.11	3292	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	48.6000926775296	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTTATGCTCTGTGCTGG	9147	False	NA	31	True	AATAAA	-20	NA	41352363	41363028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_41352537_41354005_41354311_41354969_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
transcript_9039.known	chr10	+	3408	23	FSM	ENSMUSG00000019823.18	ENSMUST00000126436.2	3408	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	64.9317664746668	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTTATGCTCTGTGCTGG	9156	False	NA	31	True	AATAAA	-20	NA	41352372	41363028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355068_41355394_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362367_41362468_41362589_41362664_41362753
transcript_90393.known	chr4	-	3525	11	FSM	ENSMUSG00000028454.17	ENSMUST00000067481.6	3525	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	53.2560794651653	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	-7	True	NA	-7	True	AATAAA	-21	NA	43025819	43017634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019782_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
transcript_90397.nnic	chr4	-	3693	11	NNC	ENSMUSG00000028454.17	novel	4239	10	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_10	54.7749030122373	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	-2	True	NA	-7	True	AATAAA	-21	NA	43025814	43017634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43024868_43025471
transcript_90398.nic	chr4	-	4086	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	5	0	intron_retention	FALSE	canonical	3	30	junction_10	46.9541265492182	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	-2	True	NA	-7	True	AATAAA	-21	NA	43025814	43017634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025285
transcript_90399.nic	chr4	-	3617	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	-20	0	intron_retention	FALSE	canonical	3	84	junction_10	34.3634980757198	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	5592	False	NA	-7	True	AATAAA	-21	NA	43025839	43017634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
transcript_90414.known	chr4	-	4239	10	FSM	ENSMUSG00000028454.17	ENSMUST00000098109.9	4239	10	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_4	26.4280995238864	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	5675	False	NA	-7	True	AATAAA	-21	NA	43025756	43017634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562
transcript_9042.known	chr10	+	2922	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	0	0	0	0	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	676	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCATATTTTGATTATGA	NA	False	NA	20	True	AATAAA	-25	NA	41395409	41407044	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
transcript_90421.known	chr4	-	1874	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	0	0	0	0	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	3794	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGAGATGGCTGTGGTG	8589	False	NA	-4	True	AATAAA	-19	NA	43031710	43027689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
transcript_90437.known	chr4	-	3280	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_8	13.7636296085008	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	11	True	NA	2	True	AATAAA	-21	NA	43040288	43032413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43039965
transcript_90439.known	chr4	-	3107	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107956.8	3107	9	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	6.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	409	False	NA	2	True	AATAAA	-21	NA	43045797	43032413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43045647
transcript_90440.known	chr4	-	3074	9	FSM	ENSMUSG00000036002.13	ENSMUST00000036462.12	3074	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	15.8779524813497	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	NA	False	NA	2	True	AATAAA	-21	NA	43046220	43032413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43046103
transcript_90447.known	chr4	+	6354	39	FSM	ENSMUSG00000028456.19	ENSMUST00000079978.13	6354	39	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_23	5.54732847284128	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGGAGTCTGGAATTC	18	False	NA	12	True	AATAAA	-14	NA	43058968	43264871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43059286_43087902_43087933_43091227_43091328_43095745_43095864_43096898_43097023_43101800_43101875_43115102_43115161_43165743_43165979_43180327_43180643_43182768_43182860_43230117_43230165_43232529_43232609_43234665_43234741_43235181_43235402_43236919_43237148_43237696_43237839_43239296_43239467_43239845_43239962_43240224_43240389_43241006_43241158_43243234_43243304_43244701_43244792_43245467_43245597_43249456_43249582_43250216_43250303_43255474_43255602_43255820_43255918_43256128_43256273_43256775_43256854_43257275_43257354_43257846_43257936_43258149_43258303_43258420_43258545_43258650_43258708_43258868_43258950_43259461_43259610_43261681_43261775_43262976_43263137_43263299
transcript_90449.known	chr4	+	3617	8	FSM	ENSMUSG00000028456.19	ENSMUST00000171234.2	3617	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	2.99659670905758	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTTGTTTAAGCCAGAT	-10	True	NA	NA	False	AATAAA	-15	NA	43058983	43168554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43059286_43087902_43087933_43091227_43091328_43095745_43095864_43096898_43097023_43101800_43101875_43115102_43115161_43165743
transcript_90453.known	chr4	+	5300	12	FSM	ENSMUSG00000035969.16	ENSMUST00000035645.12	5300	12	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_11	6.00550711451409	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTTTCTTTGTGCCCCT	NA	False	NA	17	True	AATAAA	-19	NA	43381978	43427088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43382200_43414627_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227_43426366_43426447
transcript_90454.known	chr4	+	5325	12	FSM	ENSMUSG00000035969.16	ENSMUST00000098106.9	5325	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	11.6178830520698	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTTTCTTTGTGCCCCT	163	False	NA	17	True	AATAAA	-19	NA	43406434	43427088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43406681_43414627_43416719_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227_43426366_43426447
transcript_90456.nnic	chr4	+	3212	11	NIC	ENSMUSG00000035969.16	novel	5300	12	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	12.4422666745252	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATTTTCTTTGTGCCCCT	NA	False	NA	17	True	AATAAA	-19	NA	43381975	43427088	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_43382200_43421604_43422250_43422440_43422627_43422718_43422860_43423674_43423752_43423919_43424095_43424183_43424290_43424897_43424945_43425296_43426129_43426227_43426366_43426447
transcript_90459.known	chr4	+	817	6	FSM	ENSMUSG00000028461.13	ENSMUST00000030181.12	817	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	16.9162643630324	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	-26	True	NA	14	True	AGTAAA	-45	NA	43493361	43495921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508_43495622_43495696
transcript_90460.known	chr4	+	865	5	FSM	ENSMUSG00000028461.13	ENSMUST00000107922.3	865	5	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	11.5433963806152	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	1	True	NA	14	True	AGTAAA	-45	NA	43493388	43495921	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508
transcript_90464.known	chr4	+	863	4	FSM	ENSMUSG00000028461.13	ENSMUST00000137113.2	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_1	2.94392028877595	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAATGGGGAACAACCAC	29	True	NA	-36	True	GGGGCT	-40	NA	43493416	43495871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341
transcript_90470.known	chr4	-	1659	9	FSM	ENSMUSG00000051517.15	ENSMUST00000054538.13	1659	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	13.833270582187	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCTGTCTAAATCACG	9051	False	NA	-3	True	AATAAA	-18	NA	43499695	43496141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43496721_43496820_43496910_43497086_43497317_43497581_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
transcript_90475.known	chr4	-	1508	8	FSM	ENSMUSG00000051517.15	ENSMUST00000125834.8	1508	8	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	13.3248272186983	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCAGTGGAACAAGTCC	-14	True	NA	NA	False	NA	NA	NA	43499661	43496523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43496721_43496820_43496910_43497086_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
transcript_90476.nic	chr4	-	2193	7	NIC	ENSMUSG00000051517.15	novel	1659	9	NA	NA	-21	0	intron_retention	FALSE	canonical	3	106	junction_4	12.5088857306405	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCTGTCTAAATCACG	9030	False	NA	-3	True	AATAAA	-18	NA	43499716	43496141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_43496721_43496820_43496910_43497086_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
transcript_90484.known	chr4	-	775	5	FSM	ENSMUSG00000051517.15	ENSMUST00000146781.2	775	5	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	13.9463256809814	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCACTGGGTGTTGTTCCA	9135	False	NA	NA	False	NA	NA	NA	43499611	43497731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
transcript_90486.known	chr4	-	978	3	FSM	ENSMUSG00000087142.8	ENSMUST00000139119.2	978	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGAGACCAGTTCTTAC	-1	True	NA	NA	False	AATAAA	-16	NA	43508747	43505656	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43506285_43507776_43507964_43508584
transcript_90490.known	chr4	-	1164	9	FSM	ENSMUSG00000028464.17	ENSMUST00000107914.10	1164	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2.31503239718152	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGGCCCTTTAAGCCT	9769	False	NA	-14	True	AATAAA	-16	NA	43523595	43514710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43514862_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
transcript_90491.known	chr4	-	2175	9	FSM	ENSMUSG00000028464.17	ENSMUST00000030184.12	2175	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.8309518948453	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGGCCCTTTAAGCCT	-1	True	NA	-14	True	AATAAA	-16	NA	43523464	43514710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43516004_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
transcript_90493.known	chr4	-	8393	57	FSM	ENSMUSG00000028465.17	ENSMUST00000030187.14	8393	57	0	0	0	0	multi-exon	FALSE	canonical	2	114	junction_34	45.4919257244893	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCAGCCTGGCTTTATG	-9	True	NA	-6	True	AATAAA	-12	NA	43562422	43531518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43532086_43532191_43532321_43532829_43533013_43533125_43533189_43533303_43533430_43533553_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090_43539224_43539365_43539548_43539636_43539778_43539975_43540138_43540529_43540674_43542480_43542604_43542701_43542792_43542874_43542969_43543143_43543284_43543435_43543634_43543816_43543937_43544279_43544489_43544575_43544679_43544840_43544970_43545093_43545229_43545406_43545521_43545605_43545723_43545859_43545989_43546749_43546917_43547501_43547797_43547978_43548147_43549085_43549185_43549320_43549530_43549722_43549832_43549937_43550052_43550197_43550379_43550961_43551039_43551185_43551288_43552985_43553142_43553445_43553551_43554277_43554339_43555046_43555175_43555268_43555412_43555601_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129
transcript_90495.nic	chr4	-	3610	25	ISM	ENSMUSG00000028465.17	ENSMUST00000030187.14	8393	57	-108	13395	-108	496	5prime_fragment	FALSE	canonical	2	114	junction_2	22.9107189251378	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAGAGAAAGACCTACAGG	NA	False	NA	NA	False	NA	NA	NA	43562530	43544913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_43544970_43545093_43545229_43545406_43545521_43545605_43545723_43545859_43545989_43546749_43546917_43547501_43547797_43547978_43548147_43549085_43549185_43549320_43549530_43549722_43549832_43549937_43550052_43550197_43550379_43550961_43551039_43551185_43551288_43552985_43553142_43553445_43553551_43554277_43554339_43555046_43555175_43555268_43555412_43555601_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129
transcript_90496.known	chr4	-	3544	17	FSM	ENSMUSG00000028467.16	ENSMUST00000030189.14	3544	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_8	9.51314879522022	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGTGGTGTGTCTGAG	-7	True	NA	-1	True	AATAAA	-16	NA	43578873	43566927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43567468_43567724_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569286_43569488_43569662_43569829_43569956_43570036_43570191_43570345_43570449_43570671_43570912_43571188_43571408_43573750_43573867_43574027_43574120_43578015
transcript_90504.known	chr4	-	3531	15	FSM	ENSMUSG00000028467.16	ENSMUST00000152251.8	3531	15	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_8	9.18544767442457	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGTGGTGTGTCTGAG	9	True	NA	-1	True	AATAAA	-16	NA	43578537	43566927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43567468_43567724_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569286_43569488_43569956_43570036_43570449_43570671_43570912_43571188_43571408_43573750_43573867_43574027_43574120_43578015
transcript_90506.known	chr4	-	3543	13	FSM	ENSMUSG00000028467.16	ENSMUST00000128403.8	3543	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	7.77817459305202	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGTGGTGTGTCTGAG	6300	False	NA	-1	True	AATAAA	-16	NA	43578089	43566927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569956_43570036_43570449_43570671_43570912_43571188_43571408_43573750_43573867_43574027_43574120_43578015
transcript_90510.nic	chr4	-	1526	11	ISM	ENSMUSG00000028465.17	ENSMUST00000030187.14	8393	57	-2	19675	-2	2257	5prime_fragment	FALSE	canonical	3	142	junction_4	10.992724866929	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGAAGGTGAGTGCTTCC	-11	True	NA	NA	False	NA	NA	NA	43562424	43551193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_43551288_43552985_43553142_43553445_43553551_43554277_43554339_43555046_43555175_43555268_43555412_43555601_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129
transcript_90511.nnic	chr4	+	1620	10	NNC	ENSMUSG00000028466.16	novel	1884	9	NA	NA	-3498	70	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_1	30.2426401617091	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTTTGCTCACGTGC	2910	False	NA	14	True	AATAAA	-16	NA	43558833	43566867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_43558890_43562458_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
transcript_90515.known	chr4	+	1292	9	FSM	ENSMUSG00000028468.16	ENSMUST00000030190.9	1292	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_8	1.21834929310112	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTCAACCCCTGGACTC	10	True	NA	NA	False	AAGAAA	-4	NA	43578957	43583130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43579008_43579374_43579510_43579886_43580024_43580295_43580380_43580476_43580627_43580863_43581011_43581187_43581316_43581486_43581677_43582859
transcript_90520.nic	chr4	-	901	5	ISM	ENSMUSG00000028465.17	ENSMUST00000130670.2	1376	7	-373	1132	-108	-82	5prime_fragment	FALSE	canonical	3	155	junction_3	9.65336728815391	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGATGGAGAAGCTAAAGC	NA	False	NA	NA	False	NA	NA	NA	43562530	43555645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129
transcript_90521.nic	chr4	-	831	5	ISM	ENSMUSG00000028465.17	ENSMUST00000130670.2	1376	7	-373	1202	-108	-152	5prime_fragment	FALSE	canonical	3	155	junction_3	9.65336728815391	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGATGGAAGAAAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	43562530	43555715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129
transcript_90525.known	chr4	-	937	2	FSM	ENSMUSG00000028465.17	ENSMUST00000123985.2	937	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCTTCATATTTTTAAAA	NA	False	NA	-30	True	NA	NA	NA	43562691	43559342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43559718_43562129
transcript_90526.known	chr4	+	1884	9	FSM	ENSMUSG00000028466.16	ENSMUST00000102944.11	1884	9	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_5	10.0615294563004	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCTTTTTACTGGCACA	6408	False	NA	5	True	AATAAA	-14	NA	43562331	43567060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
transcript_90527.known	chr4	-	1549	7	FSM	ENSMUSG00000066196.12	ENSMUST00000084646.11	1549	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTAATTCATTGATTCT	-3	True	NA	NA	False	CATAAA	-17	NA	43653552	43651334	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43651655_43651746_43651810_43651927_43652043_43652116_43652163_43652344_43652520_43652640_43653422_43653503
transcript_90529.known	chr4	-	610	5	FSM	ENSMUSG00000028470.11	ENSMUST00000030192.5	610	5	0	0	0	0	multi-exon	FALSE	canonical	3	693	junction_3	25.1433390781734	367	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	-12	True	NA	-7	True	AATAAA	-14	NA	43656466	43654228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43654412_43654512_43654586_43654715_43654821_43654905_43655047_43656358
transcript_90534.known	chr4	+	5102	13	FSM	ENSMUSG00000078716.11	ENSMUST00000107866.9	5102	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	2.419538523493	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTCCTTCCCTTATCT	197	False	NA	NA	False	AAGAAA	-1	NA	43669505	43692668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43670035_43673899_43674090_43674436_43674645_43680658_43680793_43681045_43681315_43681958_43682285_43685296_43685391_43685525_43685650_43685727_43685871_43686010_43686190_43689426_43689574_43689690_43689808_43690026
transcript_90535.known	chr4	-	2045	7	FSM	ENSMUSG00000043633.7	ENSMUST00000056474.7	2045	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.372677996249965	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAATCTGACCTGGCTCT	68	False	NA	NA	False	AATAAA	-11	NA	43669141	43659621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_43659693_43660036_43660157_43660281_43660480_43660643_43660755_43665459_43665604_43665756_43666610_43668593
transcript_90536.known	chr4	+	4549	22	FSM	ENSMUSG00000028476.14	ENSMUST00000128463.8	4549	22	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_15	20.296107330942	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATTATTTGTACTTCCAA	-12	True	NA	NA	False	AATAAA	-12	NA	43875529	43944745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43875706_43890963_43891023_43894818_43894894_43895849_43895887_43897994_43898081_43900069_43900118_43909579_43909614_43911931_43912130_43913784_43914053_43918313_43918494_43922811_43923025_43925060_43925198_43927145_43927287_43928276_43928466_43930192_43930316_43930575_43930753_43930888_43931061_43937309_43937503_43938888_43939100_43940656_43940731_43942273_43942430_43943143
transcript_90539.known	chr4	+	4433	21	FSM	ENSMUSG00000028476.14	ENSMUST00000030198.7	4433	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_14	9.31812749429841	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGTGTCTTTACTGT	-12	True	NA	NA	False	AATGAA	-19	NA	43875529	43944806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43875706_43890963_43891023_43894818_43894894_43895849_43895887_43897994_43898081_43900069_43900118_43909579_43909614_43911931_43912130_43913784_43914053_43918313_43918494_43922811_43923025_43925060_43925198_43927145_43927287_43928276_43928466_43930192_43930316_43930888_43931061_43937309_43937503_43938888_43939100_43940656_43940731_43942273_43942430_43943143
transcript_9054.known	chr10	-	2255	12	FSM	ENSMUSG00000019813.17	ENSMUST00000186239.7	2255	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_11	75.4430440303278	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	384	False	NA	4	True	AATAAA	-25	NA	41685609	41594836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685568
transcript_90543.nnic	chr4	+	2280	6	NNC	ENSMUSG00000028480.15	novel	2320	5	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	106.640705173963	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCTTCCTCTAATGCG	NA	False	NA	33	True	AATAAA	-18	NA	43957385	43979115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_43957774_43968111_43968221_43968571_43968676_43970499_43970578_43977462_43978518_43978569
transcript_90545.known	chr4	+	2320	5	FSM	ENSMUSG00000028480.15	ENSMUST00000030202.14	2320	5	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_4	22.0567450001128	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCTAATGCGATT	NA	False	NA	36	True	AATAAA	-21	NA	43957400	43979118	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_43957774_43968111_43968221_43968571_43968676_43970499_43970578_43977462
transcript_90550.known	chr4	+	1710	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107846.10	1710	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	535.834078796786	1177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	5	True	NA	21	True	AATAAA	-21	NA	44004451	44032846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_44004701_44012261_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44032400
transcript_90553.known	chr4	+	1099	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107849.10	1099	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	631.636794368409	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	0	True	NA	21	True	AATAAA	-21	NA	44012677	44032846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44030214_44030269_44032400
transcript_90554.known	chr4	+	1031	5	FSM	ENSMUSG00000028478.19	ENSMUST00000107845.4	1031	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	565.255860208455	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	8	True	NA	21	True	AATAAA	-21	NA	44012685	44032846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_44013003_44018812_44018851_44019873_44019992_44025448_44025561_44032400
transcript_90555.nic	chr4	-	2887	13	NIC	ENSMUSG00000028479.19	novel	2920	12	NA	NA	51	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	21.6082545955629	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATATCTGGTCCCAGAA	333	False	44072721	-6	True	NA	NA	NA	44072685	44036825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44063086_44063147_44066754_44066961_44072361
transcript_90557.known	chr4	-	2920	12	FSM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_9	6.79693659727954	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATATCTGGTCCCAGAA	240	False	NA	-6	True	NA	NA	NA	44072778	44036825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072361
transcript_90558.nnic	chr4	-	2785	12	NNC	ENSMUSG00000028479.19	novel	2920	12	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	17.3009339068614	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATATCTGGTCCCAGAA	3	True	NA	-6	True	NA	NA	NA	44072718	44036825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072436
transcript_9056.nic	chr10	-	2375	12	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	60.5360353033458	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	73	False	NA	4	True	AATAAA	-25	NA	41685920	41594836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
transcript_90565.nic	chr4	-	3139	3	ISM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	32	20854	-10	2020	5prime_fragment	FALSE	canonical	3	64	junction_2	4	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTAAGCTTATTTTGT	272	False	NA	NA	False	AATAAA	-15	NA	44072746	44057679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_44060228_44066754_44066961_44072361
transcript_9057.nnic	chr10	-	2369	11	NNC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	-5643	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_8	73.1956282847548	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	5869	False	NA	4	True	AATAAA	-25	NA	41628277	41594836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616910_41619037_41619218_41621766_41621918_41628007
transcript_90572.known	chr4	-	5240	12	FSM	ENSMUSG00000035696.16	ENSMUST00000102934.9	5240	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_10	22.7367253069995	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGTCGTGTTTCATGTA	-11	True	NA	-5	True	AATAAA	-21	NA	44167951	44126214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44158902_44159053_44167626
transcript_90574.nic	chr4	-	5162	11	NIC	ENSMUSG00000035696.16	novel	5240	12	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_10	15.9874951133691	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGTCGTGTTTCATGTA	20	True	NA	-5	True	AATAAA	-21	NA	44168023	44126214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294_44142466_44143447_44143616_44149024_44149239_44152359_44152554_44167626
transcript_90578.known	chr4	+	2955	18	FSM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	0	0	0	0	multi-exon	FALSE	canonical	2	288	junction_12	49.6985375708199	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATAGCACTGTTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	44300875	44364675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
transcript_90591.nnic	chr4	+	2407	16	NIC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	1	-379	combination_of_known_splicesites	FALSE	canonical	2	9	junction_8	119.239926199239	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACTATTTGGAGTGT	NA	False	NA	26	True	AATAAA	-27	NA	44300876	44364296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
transcript_90600.known	chr4	+	2503	9	FSM	ENSMUSG00000035649.18	ENSMUST00000107824.9	2503	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	42.9270820694815	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTAAATAAATGTGTTTA	-10	True	NA	NA	False	AATAAA	-14	NA	44756567	44932203	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_44756693_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
transcript_90603.known	chr4	+	437	2	FSM	ENSMUSG00000035649.18	ENSMUST00000143385.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTTCTCATTCTAATAAA	-7	True	NA	NA	False	AAGAAA	-42	NA	44756638	44762228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_44756697_44761849
transcript_90606.known	chr4	+	1280	9	FSM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_3	33.5326333591622	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	-31	True	NA	13	True	NA	NA	NA	44981394	44990734	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
transcript_90613.known	chr4	-	3867	2	FSM	ENSMUSG00000049657.10	ENSMUST00000107817.3	3867	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCCTGGAGGACAAGCATG	NA	False	NA	NA	False	NA	NA	NA	45012412	44992980	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_44995387_45010951
transcript_90614.known	chr4	-	4316	2	FSM	ENSMUSG00000049657.10	ENSMUST00000055028.9	4316	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACGGTCTCCTTTGCTTC	NA	False	NA	0	True	ATTAAA	-26	NA	45012394	44991241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_44995387_45012223
transcript_9062.nnic	chr10	-	2417	11	NNC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	-5643	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_10	58.0965575572254	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	5869	False	NA	4	True	AATAAA	-25	NA	41628277	41594836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
transcript_90624.known	chr4	+	2986	12	FSM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	16.5753974809925	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATGCTGACGACAATAT	5049	False	NA	33	True	ATTAAA	-15	NA	45018582	45033692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
transcript_90631.known	chr4	-	4635	11	FSM	ENSMUSG00000048232.13	ENSMUST00000052236.13	4635	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	5.25737577123797	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCTGGGGTCATAATT	NA	False	NA	0	True	AATAAA	-20	NA	45084604	45034246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_45036083_45040525_45040708_45041731_45042046_45043639_45043904_45044715_45044869_45046343_45046415_45048439_45048577_45051552_45051703_45058328_45059151_45061939_45062531_45084489
transcript_90639.known	chr4	-	679	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107808.3	679	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	2	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	-10	True	NA	NA	False	AATAAA	-14	NA	45108108	45105211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_45105645_45106838_45106889_45107912
transcript_9064.nnic	chr10	-	2303	11	NIC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	-72	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_10	60.7736785129878	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	6	True	NA	4	True	AATAAA	-25	NA	41685939	41594836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685783
transcript_90640.known	chr4	-	442	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107807.2	442	2	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCATGAACTCCACCCCT	-10	True	NA	NA	False	AAAAAG	-26	NA	45108108	45105394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_45105645_45107916
transcript_90642.known	chr4	-	738	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107809.9	738	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	60	False	NA	NA	False	AATAAA	-14	NA	45108038	45105211	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_45105645_45106614_45106794_45107912
transcript_90643.known	chr4	+	4812	16	FSM	ENSMUSG00000035615.13	ENSMUST00000044773.12	4812	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	1.63299316185545	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTCTGCCTTTCGAGT	72	False	NA	NA	False	AATAAA	-17	NA	45184905	45285936	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_45184958_45229830_45229936_45243629_45243788_45244571_45244675_45249173_45249220_45256841_45256950_45261832_45261929_45268468_45268595_45269899_45270020_45271129_45271267_45273077_45273205_45273358_45273455_45274311_45274495_45275249_45275398_45278825_45279642_45283545
transcript_90645.known	chr4	+	2064	9	FSM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	41.8103979292233	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGGAAAAAAAAACTGAATA	NA	False	NA	NA	False	ATTAAA	-25	NA	45297126	45316131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
transcript_90650.known	chr4	+	2421	8	FSM	ENSMUSG00000035572.17	ENSMUST00000107798.4	2421	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	29.3250606763817	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGTGTGTCTTTACTTGGT	83	False	NA	NA	False	NA	NA	NA	45342181	45374956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_45342728_45348105_45348220_45349536_45349592_45359760_45359959_45370305_45370509_45372663_45372775_45372923_45373070_45373908
transcript_90654.known	chr4	+	7250	7	FSM	ENSMUSG00000035572.17	ENSMUST00000155551.8	7250	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	12.6315302143309	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGAATGTAGTGGAAAAT	2	True	NA	50	True	NA	NA	NA	45342100	45379759	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_45342728_45348105_45348220_45359760_45359959_45370305_45370509_45372663_45372775_45372923_45373070_45373908
transcript_90658.known	chr4	-	1077	4	FSM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	46.9065264352651	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTGTAGTTCTACAGT	-22	True	NA	-1	True	AATAAA	-17	NA	45320629	45316612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_45317029_45317677_45317830_45319549_45319700_45320270
transcript_90665.known	chr4	-	4438	3	FSM	ENSMUSG00000045973.19	ENSMUST00000116341.4	4438	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	5.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCGGTTGCTCTTTGGAG	-22	True	NA	1	True	ATTAAA	-17	NA	45408766	45395922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_45400180_45404726_45404836_45408694
transcript_90666.known	chr4	-	1005	2	FSM	ENSMUSG00000045973.19	ENSMUST00000132815.3	1005	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATCATTATGTGAGATG	-16	True	NA	NA	False	NA	NA	NA	45408760	45399240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_45400180_45408694
transcript_90667.known	chr4	-	2244	6	FSM	ENSMUSG00000044813.16	ENSMUST00000061986.12	2244	6	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	2.71293199325011	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTAGTCGGGTTTTTT	454	False	NA	NA	False	AATAAA	-17	NA	45530330	45423277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_45424124_45444678_45444799_45447505_45447678_45458126_45458343_45489054_45489176_45529561
transcript_90668.known	chr4	+	445	2	FSM	ENSMUSG00000035561.6	ENSMUST00000172750.2	445	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGGAGTCTTATGTCT	16	True	NA	NA	False	NA	NA	NA	45799120	45802858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_45799170_45802462
transcript_9067.known	chr10	-	1769	11	FSM	ENSMUSG00000019813.17	ENSMUST00000187143.7	1769	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	86.4694165586886	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGGAGGGCACAGTAATT	126	False	NA	NA	False	NA	NA	NA	41685867	41595220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685841
transcript_90674.known	chr4	+	3010	23	FSM	ENSMUSG00000028330.9	ENSMUST00000030014.9	3010	23	0	0	0	0	multi-exon	TRUE	canonical	3	296	junction_19	36.3529529761015	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	27	False	NA	21	True	AATAAA	-21	NA	46138612	46172403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
transcript_90681.nnic	chr4	-	3625	10	NNC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_3	52.704627669473	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTGGGAAGAGTGCTCT	-29	True	NA	-3	True	AATAAA	-25	NA	46138460	46114745	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_46117084_46119142_46119282_46119840_46119914_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
transcript_90684.known	chr4	-	2700	10	FSM	ENSMUSG00000035495.16	ENSMUST00000107770.2	2700	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_9	51.5344784502162	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAACTCCCCAAAACAA	-7	True	NA	NA	False	NA	NA	NA	46138438	46115731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135592_46138379
transcript_90694.known	chr4	-	1241	6	FSM	ENSMUSG00000028329.14	ENSMUST00000058232.11	1241	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	31.2064095980297	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAGTAACAAGAGTATGT	4	True	NA	NA	False	AATAAA	-19	NA	46196311	46155346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_46155827_46183117_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
transcript_90695.known	chr4	-	955	6	FSM	ENSMUSG00000028329.14	ENSMUST00000030013.12	955	6	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	5.6	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATGCAGTCTTCACAGA	4	True	NA	-1	True	AATAAA	-18	NA	46196311	46175221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_46175416_46183117_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
transcript_90697.known	chr4	-	903	5	FSM	ENSMUSG00000028329.14	ENSMUST00000142380.2	903	5	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	6.25999201277446	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCATTTTTGCACAGCA	11	True	NA	NA	False	AATAAA	-17	NA	46196304	46182968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_46183236_46184287_46184454_46185590_46185697_46193049_46193158_46196048
transcript_907.known	chr1	-	9033	41	FSM	ENSMUSG00000037470.15	ENSMUST00000046875.14	9033	41	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_21	76.4630261956719	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTGCTTGTTCATTC	NA	False	NA	1	True	AATAAA	-20	NA	36283386	36179107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36215856_36215881_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
transcript_90700.known	chr4	-	1527	5	FSM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	13.5346776836392	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCTGAGCTTTGAAT	-14	True	NA	NA	False	ATTAAA	-27	NA	46389437	46379863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
transcript_90703.known	chr4	-	2127	6	FSM	ENSMUSG00000028331.13	ENSMUST00000151903.8	2127	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	59.5126877228713	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTATATTTTCCATCAC	5	True	NA	NA	False	AGTAAA	-12	NA	46389418	46376504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_46377249_46379984_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389321
transcript_90715.known	chr4	+	1716	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	0	0	0	0	multi-exon	FALSE	canonical	3	5377	junction_1	313.520688666988	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	4	True	NA	8	True	AATAAA	-20	NA	46450901	46472657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
transcript_90729.nic	chr4	+	1213	6	ISM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	-85	1207	-85	-1207	5prime_fragment	FALSE	canonical	3	5377	junction_1	336.790379910116	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGATGAGGATGAAGGTG	NA	False	NA	30	True	NA	NA	NA	46450816	46471450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397
transcript_9073.nnic	chr10	-	2330	10	NNC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-5643	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_9	71.4082334361321	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	5869	False	NA	4	True	AATAAA	-25	NA	41628277	41594836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
transcript_90734.nic	chr4	+	1079	5	ISM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	-85	2731	-85	-2731	5prime_fragment	FALSE	canonical	3	5377	junction_1	364.527776719415	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGATGAAGACGAAGA	NA	False	NA	NA	False	NA	NA	NA	46450816	46469926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882
transcript_90741.nic	chr4	+	1030	4	ISM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	-80	3870	-80	-3870	5prime_fragment	FALSE	canonical	3	5377	junction_1	388.218437938689	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTAGACTGGGCATCCT	NA	False	NA	31	True	NA	NA	NA	46450821	46468787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558
transcript_90746.known	chr4	-	4154	12	FSM	ENSMUSG00000028337.15	ENSMUST00000107756.4	4154	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	1.27920429813366	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCAATGCTTGGCGATT	6	True	NA	NA	False	AATAAA	-19	NA	46602202	46536942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_46539268_46540417_46540690_46541892_46541984_46542234_46542348_46543347_46543445_46544062_46544168_46545611_46545729_46546648_46546829_46548767_46548918_46551328_46551446_46562894_46563096_46601816
transcript_90752.nnic	chr4	+	1080	6	NNC	ENSMUSG00000028334.11	novel	2179	6	NA	NA	0	-958	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	361.736146935857	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTGCTGCTGTCCAGT	NA	False	NA	12	True	AATAAA	-25	NA	46489247	46502674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500914_46502509
transcript_90755.known	chr4	+	2179	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_3	76.1377698648969	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACTTTGATGTGTGTGT	NA	False	NA	14	True	NA	NA	NA	46489247	46503632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
transcript_90760.known	chr4	+	2603	2	FSM	ENSMUSG00000028334.11	ENSMUST00000132345.2	2603	2	0	0	0	0	multi-exon	FALSE	canonical	3	1023	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAGTGAAAAGACCTC	3	True	NA	NA	False	AAAAAG	-7	NA	46489318	46495136	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_46489491_46492705
transcript_90761.known	chr4	-	4315	13	FSM	ENSMUSG00000039813.15	ENSMUST00000084621.12	4315	13	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_12	4.63381292481928	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTGGGCTGCCTGA	-14	True	NA	1	True	AATAAA	-15	NA	46650209	46604389	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_46605969_46606382_46606505_46606969_46607156_46608982_46609104_46613947_46614425_46615026_46615209_46616253_46616365_46620446_46620822_46628340_46628538_46629875_46630010_46637588_46637737_46646116_46646259_46649668
transcript_90765.known	chr4	-	3438	16	FSM	ENSMUSG00000066191.13	ENSMUST00000229609.2	3438	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	1.85711843695788	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGTCTGAGGAAGAGCCA	NA	False	NA	NA	False	NA	NA	NA	47057427	47016127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_47016817_47017522_47017620_47023743_47023861_47025685_47025754_47027100_47027285_47030663_47030852_47033115_47033270_47035715_47035920_47038913_47038964_47039669_47039869_47041014_47041164_47043535_47043643_47044819_47045025_47046009_47046055_47049068_47049572_47056948
transcript_90767.known	chr4	+	2288	10	FSM	ENSMUSG00000039774.13	ENSMUST00000045041.12	2288	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	5.3748384988657	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAATGTTCATTACTGAC	NA	False	NA	33	True	AATAAA	-43	NA	47091908	47123070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_47092329_47104099_47104270_47108390_47108581_47111455_47111642_47112321_47112440_47113727_47113905_47117903_47118036_47119514_47119629_47120361_47120509_47122436
transcript_90770.known	chr4	-	3021	2	FSM	ENSMUSG00000039740.7	ENSMUST00000044148.3	3021	2	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	0	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCAGTTTATGGTTGCG	-17	True	NA	-2	True	AATAAA	-15	NA	47474333	47469832	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_47472459_47473938
transcript_90771.known	chr4	-	531	2	FSM	ENSMUSG00000039740.7	ENSMUST00000143104.2	531	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGACAGAAGATCTCACTC	339	False	NA	NA	False	NA	NA	NA	47473977	47471893	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_47472386_47473938
transcript_90772.known	chr4	+	564	4	FSM	ENSMUSG00000053317.12	ENSMUST00000065678.6	564	4	0	0	0	0	multi-exon	FALSE	canonical	3	2329	junction_2	60.4225859169308	1171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTGCCTGTGCTTTATT	-22	True	NA	NA	False	AATAAA	-25	NA	47474657	47483242	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_47474754_47474911_47475010_47480130_47480233_47482974
transcript_90774.known	chr4	+	5770	8	FSM	ENSMUSG00000061455.14	ENSMUST00000107720.9	5770	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	8.24621125123532	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTCCTGTTGTATATT	5	True	NA	NA	False	AATAAA	-25	NA	48124925	48186507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_48124959_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
transcript_90776.nic	chr4	+	2493	8	NIC	ENSMUSG00000061455.14	novel	5770	8	NA	NA	4	884	intron_retention	FALSE	canonical	2	7	junction_1	13.490737563232	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGAGTATTTATTTCTT	-2	True	NA	14	True	ATTAAA	-11	NA	48124918	48183115	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_48125067_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
transcript_90780.known	chr4	-	2624	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	0	0	0	0	multi-exon	TRUE	canonical	3	625	junction_9	43.7020339182862	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCAGCTTCCAGTTCTTA	20	True	NA	NA	False	AATAAA	-29	NA	48279558	48193322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
transcript_90785.known	chr4	+	5633	17	FSM	ENSMUSG00000028344.13	ENSMUST00000030029.10	5633	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	2.59506743650334	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCCCTGATGCCTTTAT	-22	True	NA	12	True	AATAAA	-19	NA	48279801	48431954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_48279976_48283225_48283356_48307682_48307850_48382104_48382279_48385104_48385273_48389958_48390140_48392583_48392694_48396234_48396407_48397504_48397661_48398049_48398280_48402832_48402940_48407597_48407811_48415905_48416199_48421446_48422150_48425994_48426225_48427033_48427109_48429604
transcript_90791.known	chr4	+	1866	3	FSM	ENSMUSG00000028344.13	ENSMUST00000156602.2	1866	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	48279759	48309202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_48279976_48283225_48283356_48307682
transcript_90802.nnic	chr4	-	3365	15	NNC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	139	junction_14	171.623282279556	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473476	48430857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473019
transcript_90803.known	chr4	-	3102	15	FSM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_12	54.2776309771327	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473459	48430857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
transcript_90805.nic	chr4	-	2641	15	NIC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_12	196.22390636355	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473471	48430857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468753_48468994_48469883_48470073_48473265
transcript_90818.nic	chr4	-	1445	5	ISM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	4	31912	4	-4601	5prime_fragment	FALSE	canonical	3	662	junction_2	67.4333003789671	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATTGCAATTGTTTTCCA	-25	True	NA	NA	False	AATAAA	-2	NA	48473455	48462769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
transcript_90820.nic	chr4	-	1038	3	ISM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	-66	37547	-66	-698	5prime_fragment	FALSE	canonical	3	823	junction_2	0.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCCATGCCACTAGCAAC	NA	False	NA	NA	False	AAAAAG	-4	NA	48473525	48468404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_48468994_48469883_48470073_48473265
transcript_90822.known	chr4	-	942	2	FSM	ENSMUSG00000028345.16	ENSMUST00000132911.2	942	2	0	0	0	0	multi-exon	FALSE	canonical	3	823	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAATAACTGAAG	4	True	NA	NA	False	TTTAAA	-35	NA	48473343	48469208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_48470073_48473265
transcript_90825.nnic	chr4	+	1939	4	NIC	ENSMUSG00000039693.12	novel	1589	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	136.514549489138	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	18	False	NA	14	True	NA	NA	NA	48539934	48561918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_48540272_48549921_48549998_48552379_48552831_48560843
transcript_90829.known	chr4	+	1378	3	FSM	ENSMUSG00000039693.12	ENSMUST00000064807.9	1378	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	89	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGACTTTATCTTTT	2	True	NA	65	True	GATAAA	-14	NA	48540078	48561577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_48540272_48552379_48552831_48560843
transcript_90831.known	chr4	+	1589	3	FSM	ENSMUSG00000039693.12	ENSMUST00000061135.8	1589	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	140.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	18	False	NA	14	True	NA	NA	NA	48539934	48561918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_48539998_48552379_48552831_48560843
transcript_90832.known	chr4	+	1597	3	FSM	ENSMUSG00000039693.12	ENSMUST00000107704.2	1597	3	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	75.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTACACTGTGTATGTT	38	True	NA	15	True	NA	NA	NA	48540498	48561919	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_48540569_48552379_48552831_48560843
transcript_90836.known	chr4	+	1426	10	FSM	ENSMUSG00000028347.15	ENSMUST00000130834.8	1426	10	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_4	69.1178989163971	602	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAATCTAGAGGAC	248	False	NA	NA	False	AGTAAA	-24	NA	48585550	48662470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617231_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
transcript_9084.known	chr10	-	2177	11	FSM	ENSMUSG00000019813.17	ENSMUST00000019951.16	2177	11	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_4	38.3583107031579	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	390	False	NA	-1	True	AATAAA	-20	NA	41685603	41594841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
transcript_90840.known	chr4	-	2114	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	0	0	0	0	multi-exon	FALSE	canonical	3	1281	junction_1	0	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_49514578_49520961
transcript_90843.known	chr4	+	2835	4	FSM	ENSMUSG00000039634.13	ENSMUST00000042964.13	2835	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	22.553639765383	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAAAAATGACCT	NA	False	NA	NA	False	AAGAAA	-35	NA	49521175	49531517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_49521252_49521422_49521596_49522397_49522483_49529016
transcript_90844.known	chr4	+	2965	3	FSM	ENSMUSG00000039634.13	ENSMUST00000107696.2	2965	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	6.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAAAAATGACCT	-39	True	NA	NA	False	AAGAAA	-35	NA	49521216	49531517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_49521596_49522397_49522483_49529016
transcript_90847.known	chr4	+	4154	21	FSM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	16.7996279720713	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTTGTGGTGTTCT	-13	True	NA	5	True	ATTAAA	-17	NA	49632065	49656887	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
transcript_90849.known	chr4	+	4312	20	FSM	ENSMUSG00000028309.15	ENSMUST00000167496.8	4312	20	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	16.450883834839	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTGTTTGTGGTGTTC	-19	True	NA	4	True	ATTAAA	-16	NA	49632059	49656886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
transcript_9085.known	chr10	-	1949	10	FSM	ENSMUSG00000019813.17	ENSMUST00000190022.7	1949	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	66.7229392134665	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	390	False	NA	-1	True	AATAAA	-20	NA	41685603	41594841	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616910_41621766_41621918_41685568
transcript_90852.nic	chr4	+	2425	16	ISM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	-61	4337	-1	0	5prime_fragment	FALSE	canonical	3	46	junction_1	14.0412091913608	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGGAAGATAAGGAGAAGA	0	True	NA	NA	False	NA	NA	NA	49632004	49652550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521
transcript_90855.nic	chr4	+	2080	14	ISM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	-61	6758	-1	-122	5prime_fragment	FALSE	canonical	3	46	junction_1	7.70460555418395	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAACGAGAAAGGAGGG	0	True	NA	0	True	NA	NA	NA	49632004	49650129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962
transcript_90856.nic	chr4	+	2134	14	ISM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	-61	6704	-1	-68	5prime_fragment	FALSE	canonical	3	46	junction_1	7.70460555418395	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAGGAGAGAGAACGAG	0	True	NA	54	True	NA	NA	NA	49632004	49650183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962
transcript_9086.known	chr10	+	3809	10	FSM	ENSMUSG00000038332.14	ENSMUST00000099931.11	3809	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	18.7662686623146	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	-8	True	NA	8	True	AATAAA	-15	NA	41685930	41784420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_41687297_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
transcript_90861.known	chr4	+	2300	13	FSM	ENSMUSG00000028309.15	ENSMUST00000156314.8	2300	13	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	7.28535441065765	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAGAGAAAGGGAAACAT	-19	True	NA	NA	False	NA	NA	NA	49632059	49650251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962
transcript_90869.known	chr4	+	5328	25	FSM	ENSMUSG00000028312.20	ENSMUST00000117280.8	5328	25	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_1	79.8595990195014	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	-19	True	NA	21	True	ATTAAA	-21	NA	52439242	52488260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_52439335_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
transcript_9087.known	chr10	+	2600	10	FSM	ENSMUSG00000038332.14	ENSMUST00000041438.7	2600	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	20.085619202938	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	NA	False	NA	8	True	AATAAA	-15	NA	41763434	41784420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_41763592_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
transcript_90870.known	chr4	+	5404	25	FSM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	46.9361083164006	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	-19	True	NA	21	True	ATTAAA	-21	NA	52439242	52488260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
transcript_90873.known	chr4	+	1552	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_3	32.5785205311721	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATCAAGTGAGTCTT	NA	False	NA	10	True	AATAAA	-21	NA	53011879	53022060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
transcript_90877.known	chr4	+	848	5	FSM	ENSMUSG00000015247.11	ENSMUST00000107665.4	848	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	242.862615484557	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTACTCCGTGCCCTG	2	True	NA	NA	False	NA	NA	NA	53011949	53021576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53021110_53021198_53021283
transcript_9088.known	chr10	-	1135	3	FSM	ENSMUSG00000071324.12	ENSMUST00000162405.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAATCCTGAGTCTCATC	NA	False	NA	NA	False	AATAAA	-33	NA	41894376	41875803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_41876495_41887763_41888020_41894188
transcript_90881.known	chr4	+	4382	16	FSM	ENSMUSG00000028412.18	ENSMUST00000107651.9	4382	16	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_12	25.9286199658473	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTATGTGTGTAACCAT	138	False	NA	33	True	AATAAA	-33	NA	53440670	53567818	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_53440717_53481463_53481554_53491387_53491531_53517544_53517682_53528654_53528749_53536322_53536493_53538389_53538480_53541300_53541441_53542364_53542552_53543541_53543708_53544540_53544698_53545684_53545769_53553485_53553624_53560914_53561152_53563140_53563222_53565396
transcript_90882.known	chr4	+	3102	16	FSM	ENSMUSG00000028412.18	ENSMUST00000102911.10	3102	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_15	93.8563914830643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCGTTGTCCGTGACTCC	-33	True	NA	NA	False	NA	NA	NA	53440412	53622478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_53440717_53481463_53481554_53491387_53491531_53517544_53517682_53528654_53528749_53536322_53536493_53538389_53538480_53541300_53541441_53542364_53542552_53543541_53543708_53544540_53544698_53545684_53545769_53553485_53553624_53560914_53561152_53563140_53563222_53621594
transcript_90887.known	chr4	+	3326	12	FSM	ENSMUSG00000028414.18	ENSMUST00000107638.4	3326	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	18.8556938372112	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAGGAAAGAAAAAGA	-8	True	NA	NA	False	NA	NA	NA	53714162	53762787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_53714196_53720006_53720210_53724604_53724743_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53742495_53742767_53744618_53744749_53747008_53747143_53748368_53748497_53761173
transcript_90888.nic	chr4	+	3264	11	ISM	ENSMUSG00000028414.18	ENSMUST00000222290.2	3123	12	-14	14908	-14	195	5prime_fragment	FALSE	canonical	2	9	junction_2	14.4377976159801	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCCCCAAAACAACAACAAAA	-22	True	NA	NA	False	NA	NA	NA	53714148	53762982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_53714196_53720006_53720210_53724604_53724743_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
transcript_90891.known	chr4	+	6080	10	FSM	ENSMUSG00000028414.18	ENSMUST00000128667.8	6080	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6.81501610008696	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGTGTTTGTTTTTGA	1326	False	NA	5	True	AATAAA	-18	NA	53713997	53765785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_53714196_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
transcript_90893.known	chr4	+	6241	10	FSM	ENSMUSG00000028414.18	ENSMUST00000221657.2	6241	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	14.3819159423506	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGTGTTTGTTTTTGA	17	True	NA	5	True	AATAAA	-18	NA	53714187	53765785	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_53714547_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
transcript_90896.known	chr4	+	2862	6	FSM	ENSMUSG00000028420.14	ENSMUST00000030127.13	2862	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	9.52050418832952	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGGTATTCTTCTTC	-16	True	NA	NA	False	ATTAAA	-31	NA	53826044	53862019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_53826221_53840626_53840784_53848865_53849051_53850473_53850562_53854311_53854430_53859881
transcript_9090.known	chr10	-	2889	4	FSM	ENSMUSG00000048756.12	ENSMUST00000056974.4	2889	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	60.8604962188118	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACTTAACACATTGCATA	NA	False	NA	NA	False	NA	NA	NA	42152738	42061781	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_42062292_42072461_42073898_42150811_42151538_42152521
transcript_90901.nnic	chr4	+	2750	5	NIC	ENSMUSG00000028420.14	novel	2862	6	NA	NA	-45	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	42.4345083628879	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGGTATTCTTCTTC	NA	False	NA	NA	False	ATTAAA	-31	NA	53825999	53862019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_53826221_53848865_53849051_53850473_53850562_53854311_53854430_53859881
transcript_90906.known	chr4	+	10465	13	FSM	ENSMUSG00000060206.12	ENSMUST00000098070.10	10465	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.78803124001735	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGCATCTGTTAAGT	127	False	NA	10	True	AATAAA	-19	NA	54947975	55083563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_54948233_55007532_55007783_55008255_55013850_55014682_55014848_55016996_55017101_55020088_55020208_55023414_55023607_55050185_55050454_55051190_55051328_55060013_55060238_55072972_55073106_55079263_55079388_55080665
transcript_90920.known	chr4	+	3810	10	FSM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	0	0	0	0	multi-exon	FALSE	canonical	3	1075	junction_8	117.532764016184	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCATTTCTCATTTTTT	NA	False	NA	30	True	TATAAA	-20	NA	55350042	55392237	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
transcript_90931.nic	chr4	+	813	3	ISM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	-304	24151	-304	-488	5prime_fragment	FALSE	canonical	3	1170	junction_2	132	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGATGAGAAAAACTTTGTG	NA	False	NA	NA	False	TATAAA	-2	NA	55349738	55368086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_55350428_55366776_55366859_55368044
transcript_90933.known	chr4	+	2176	2	FSM	ENSMUSG00000028426.11	ENSMUST00000127266.2	2176	2	0	0	0	0	multi-exon	FALSE	canonical	3	1434	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAATAAAAAAATAAAA	-11	True	NA	NA	False	NA	NA	NA	55350049	55368574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_55350428_55366776
transcript_9094.nic	chr10	-	3698	3	ISM	ENSMUSG00000048756.12	ENSMUST00000056974.4	2889	4	866	-691	820	691	3prime_fragment	FALSE	canonical	3	128	junction_1	3	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCTGCTTCTGTGGAA	NA	False	NA	NA	False	AATACA	-36	NA	42151872	42061090	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_42062292_42072461_42073898_42150811
transcript_90942.known	chr4	-	3029	5	FSM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_2	61.7267162580353	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAATCTCTTTGTTTTTT	9	True	NA	-7	True	AATAAA	-21	NA	55532466	55527142	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629_55531751_55531866
transcript_90943.known	chr4	-	1439	1	FSM	ENSMUSG00000070980.5	ENSMUST00000095080.5	1439	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTCATGTCTGGTCTGGAG	3	False	NA	NA	False	CATAAA	-15	NA	56741443	56740004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_56740000_56741400
transcript_90944.known	chr4	-	6160	37	FSM	ENSMUSG00000028431.12	ENSMUST00000030140.3	6160	37	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_24	36.3764927995411	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTCTCTCTTCTGCTGA	NA	False	NA	NA	False	AATGAA	-15	NA	56802331	56749679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_56751720_56755303_56755380_56757116_56757272_56758212_56758341_56758963_56759076_56759800_56759915_56762248_56762310_56762840_56762904_56767814_56767877_56769013_56769216_56770980_56771079_56771432_56771557_56772380_56772530_56773015_56773102_56773198_56773337_56774521_56774602_56774687_56774767_56775016_56775091_56775424_56775541_56776689_56776796_56776884_56776939_56778958_56779063_56779656_56779764_56781025_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
transcript_9095.known	chr10	-	2535	3	FSM	ENSMUSG00000048756.12	ENSMUST00000175881.8	2535	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	12.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCACTCTTTATGTCCTCT	NA	False	NA	NA	False	AATAAA	-24	NA	42152692	42072263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_42073898_42150811_42151542_42152521
transcript_90969.known	chr4	+	4275	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTTTCTGTGTACGTT	0	True	NA	13	True	AATAAA	-22	NA	56802348	56809601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
transcript_90973.known	chr4	+	4360	6	FSM	ENSMUSG00000038827.12	ENSMUST00000131520.8	4360	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	52.8189359983709	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTTTCTGTGTACGTT	3	True	NA	13	True	AATAAA	-22	NA	56802351	56809601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_56802727_56803507_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
transcript_90978.known	chr4	-	3664	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	-17	True	NA	-6	True	AATAAA	-21	NA	56865188	56810934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
transcript_9098.known	chr10	-	1316	3	FSM	ENSMUSG00000048756.12	ENSMUST00000105501.2	1316	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	54.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATCAGGGAATGTGTAAT	NA	False	NA	NA	False	AATAAA	-27	NA	42152751	42123426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_42123783_42150811_42151542_42152521
transcript_90982.nic	chr4	-	3457	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	NA	False	NA	-6	True	AATAAA	-21	NA	56846158	56810934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_90985.nic	chr4	-	2902	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	-66	-555	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGGATTTAAACCTTTT	NA	False	NA	-4	True	AATAAA	-19	NA	56846158	56811489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_91.nnic	SIRV3	+	1047	8	NNC	SIRV3A	novel	1083	8	NA	NA	-8	-70	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1147.84278593564	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGGAAATAATAATCAAAAG	NA	False	NA	NA	False	AATAGA	-7	NA	1936	8867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7363_7861_7989_8124_8208_8755
transcript_910.known	chr1	-	5399	40	FSM	ENSMUSG00000037470.15	ENSMUST00000174266.8	5399	40	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_33	91.5716164908405	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTGTGCTTTTTCTTC	NA	False	NA	-5	True	NA	NA	NA	36283242	36182566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250477_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
transcript_9100.nic	chr10	-	2634	2	ISM	ENSMUSG00000048756.12	ENSMUST00000175881.8	2535	3	881	0	881	0	3prime_fragment	FALSE	canonical	3	134	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCACTCTTTATGTCCTCT	NA	False	NA	NA	False	AATAAA	-24	NA	42151811	42072263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_42073898_42150811
transcript_91000.known	chr4	-	654	5	FSM	ENSMUSG00000038816.15	ENSMUST00000131231.2	654	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	112.62548557054	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACACTGTGCTCAGGG	NA	False	NA	NA	False	NA	NA	NA	56814319	56812139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56814169
transcript_91002.nic	chr4	-	743	4	ISM	ENSMUSG00000038816.15	ENSMUST00000107612.3	850	5	-68	816	-34	-816	5prime_fragment	FALSE	canonical	3	229	junction_3	12.2292908852294	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACGTACTTATCACTTTG	9395	False	NA	NA	False	NA	NA	NA	56865222	56841561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_56841681_56844446_56844635_56847809_56848000_56864976
transcript_91006.known	chr4	-	2643	18	FSM	ENSMUSG00000055296.15	ENSMUST00000107609.4	2643	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	24.2388632437555	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTCCCTGCAGTGAC	18	False	NA	NA	False	NA	NA	NA	56947411	56880246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_56880293_56886017_56886213_56888534_56888710_56890799_56890901_56899025_56899172_56899305_56899429_56903211_56903248_56903917_56904050_56906214_56906314_56910156_56910248_56912047_56912131_56916701_56916807_56923338_56923509_56924978_56925216_56926176_56926294_56936368_56936471_56937861_56937980_56946844
transcript_91007.known	chr4	-	15981	18	FSM	ENSMUSG00000055296.15	ENSMUST00000068792.13	15981	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	24.2097238035381	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGTGATAAACTTAGCCTC	-8	True	NA	NA	False	AATAAA	-21	NA	56947437	56866922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_56880293_56886017_56886213_56888534_56888710_56890799_56890901_56899025_56899172_56899305_56899429_56903917_56904050_56906214_56906314_56910156_56910248_56912047_56912131_56916701_56916807_56922386_56922411_56923338_56923509_56924978_56925216_56926176_56926294_56936368_56936471_56937861_56937980_56946844
transcript_91019.nic	chr4	-	4208	26	NIC	ENSMUSG00000038764.15	novel	6369	26	NA	NA	-41	-2131	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	7.95044652834041	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTGGTATTTTTAAATA	1393	False	NA	-15	True	AATAAA	-15	NA	57300416	57192971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57300280
transcript_91020.nic	chr4	-	4313	26	NIC	ENSMUSG00000038764.15	novel	6369	26	NA	NA	-77	-2131	combination_of_known_junctions	FALSE	canonical	2	9	junction_25	11.3804042107475	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTGGTATTTTTAAATA	-38	True	NA	-15	True	AATAAA	-15	NA	57300833	57192971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57300592
transcript_91025.nnic	chr4	+	3131	5	NNC	ENSMUSG00000038729.25	novel	7211	4	NA	NA	15228	-3825	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	7.36121593216773	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	NA	False	NA	NA	False	AATACA	-45	NA	57757322	57893157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_57757427_57757600_57757684_57854561_57857038_57883023_57883203_57892868
transcript_91028.nnic	chr4	+	2952	4	NNC	ENSMUSG00000038729.25	novel	7211	4	NA	NA	15228	-3825	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	7.11805216802087	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	NA	False	NA	NA	False	AATACA	-45	NA	57757322	57893157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_57757427_57757600_57757684_57854561_57857038_57892868
transcript_9103.nnic	chr10	-	2350	13	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	9281	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	15.99717857068	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42344995	42188580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42344855
transcript_91030.nic	chr4	+	3137	4	ISM	ENSMUSG00000038729.25	ENSMUST00000107600.8	7231	5	15396	3825	15396	-3825	3prime_fragment	FALSE	canonical	2	4	junction_1	6.48074069840786	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	NA	False	NA	NA	False	AATACA	-45	NA	57757490	57893157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_57757684_57854561_57857038_57883023_57883203_57892868
transcript_91033.nic	chr4	+	3138	4	NIC	ENSMUSG00000038729.25	novel	7211	4	NA	NA	-51	-3825	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.29983164553722	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	961	False	NA	NA	False	AATACA	-45	NA	57782128	57893157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_57782323_57854561_57857038_57883023_57883203_57892868
transcript_91035.nnic	chr4	+	3107	4	NNC	ENSMUSG00000038729.25	novel	6830	4	NA	NA	-77	-3825	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	6.48074069840786	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	NA	False	NA	NA	False	AATACA	-45	NA	57845169	57893157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_57845333_57854561_57857038_57883023_57883203_57892868
transcript_91036.nic	chr4	+	2958	3	NIC	ENSMUSG00000038729.25	novel	7231	5	NA	NA	15396	-3825	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	7	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	NA	False	NA	NA	False	AATACA	-45	NA	57757490	57893157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_57757684_57854561_57857038_57892868
transcript_91037.nic	chr4	+	2959	3	NIC	ENSMUSG00000038729.25	novel	7172	3	NA	NA	-51	-3825	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.5	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	961	False	NA	NA	False	AATACA	-45	NA	57782128	57893157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_57782323_57854561_57857038_57892868
transcript_91039.nnic	chr4	+	2988	3	NNC	ENSMUSG00000038729.25	novel	6650	3	NA	NA	-137	-3825	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	7	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGCGAAGCAAACA	NA	False	NA	NA	False	AATACA	-45	NA	57845109	57893157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_57845333_57854561_57857038_57892868
transcript_91040.known	chr4	+	784	2	FSM	ENSMUSG00000038729.25	ENSMUST00000124581.2	784	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTTGAGCTGCGTGCCT	10	True	NA	NA	False	NA	NA	NA	57782179	57855202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_57782323_57854561
transcript_91042.known	chr4	-	2830	2	FSM	ENSMUSG00000052117.6	ENSMUST00000063816.6	2830	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTTTTCTTCTCAATT	-3	True	NA	NA	False	NA	NA	NA	57916297	57908482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_57910612_57915596
transcript_91046.known	chr4	-	1051	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	0	0	0	0	multi-exon	TRUE	canonical	3	4612	junction_4	90.890043459116	2129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGAGTGTGACTGAT	24	False	NA	NA	False	AATAAA	-13	NA	57956411	57943372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
transcript_9105.nnic	chr10	-	2440	13	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	3116	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	15.7524248574272	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42351160	42188580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42350930
transcript_91054.nnic	chr4	-	3626	5	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	2	16	junction_4	115.15288750179	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	426	False	NA	-5	True	AATAAA	-22	NA	58553332	58435254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58543809_58543949_58553133
transcript_91055.nnic	chr4	-	3493	5	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	103	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	115.15288750179	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	NA	False	NA	-5	True	AATAAA	-22	NA	58553795	58435254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58543809_58543949_58553729
transcript_91070.known	chr4	-	3512	4	FSM	ENSMUSG00000038668.15	ENSMUST00000055018.11	3512	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	72.8941393772885	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	401	False	NA	-5	True	AATAAA	-22	NA	58553357	58435254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_58437635_58486476_58487225_58504621_58504782_58553133
transcript_91072.nic	chr4	-	3458	4	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_3	79.7927871983984	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	NA	False	NA	-5	True	AATAAA	-22	NA	58553899	58435254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553729
transcript_91076.known	chr4	-	3421	4	FSM	ENSMUSG00000038668.15	ENSMUST00000107575.9	3421	4	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_3	114.601725796585	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	205	False	NA	-5	True	AATAAA	-22	NA	58553553	58435254	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_58437635_58486476_58487225_58504621_58504782_58553420
transcript_91078.nic	chr4	-	2315	4	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-1	-1143	combination_of_known_junctions	FALSE	canonical	3	105	junction_3	79.7927871983984	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTGATATACGACCTG	NA	False	NA	NA	False	NA	NA	NA	58553899	58436397	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553729
transcript_9108.known	chr10	-	2513	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42354561	42188580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
transcript_91086.known	chr4	-	7045	49	FSM	ENSMUSG00000050812.19	ENSMUST00000102889.10	7045	49	0	0	0	0	multi-exon	TRUE	canonical	3	80	junction_48	23.9024347899725	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATAATGTGTGTGTGTCT	-22	True	NA	-3	True	AATAAA	-18	NA	58912749	58798910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_58800321_58801732_58801805_58803669_58803759_58805540_58805647_58807750_58807890_58809395_58809589_58809681_58809726_58810615_58810825_58811370_58811563_58811708_58811776_58811851_58811944_58812643_58812711_58813991_58814082_58815258_58815325_58817399_58817551_58819142_58819265_58820127_58820176_58821362_58821469_58822035_58822116_58824165_58824334_58824697_58824816_58826401_58826471_58827036_58827152_58828007_58828063_58828506_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58912475
transcript_91096.nic	chr4	-	2861	22	ISM	ENSMUSG00000050812.19	ENSMUST00000102889.10	7045	49	-60	35019	-60	-1224	5prime_fragment	FALSE	canonical	3	80	junction_21	19.3609935840689	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCAAGCCTTTTTATTT	2670	False	NA	NA	False	AGTAAA	-9	NA	58912809	58833929	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58912475
transcript_9110.nnic	chr10	-	2298	12	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	9281	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_11	18.5374314195997	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42344995	42188580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42344855
transcript_91102.known	chr4	-	2296	10	FSM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_9	57.656068390259	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGCTGTGCCTTCTCT	5	True	NA	NA	False	NA	NA	NA	58987119	58965438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
transcript_9111.nnic	chr10	-	2388	12	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	3116	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	18.3127106650224	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42351160	42188580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42350930
transcript_91111.known	chr4	+	2393	5	FSM	ENSMUSG00000070972.14	ENSMUST00000153467.3	2393	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	45.2189119727576	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCATGCTGCCTGGTAGG	24	True	NA	NA	False	AATAAA	-12	NA	59003192	59023740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59003558_59013631_59013856_59017669_59017823_59020058_59020530_59022560
transcript_91113.known	chr4	+	4023	4	FSM	ENSMUSG00000070972.14	ENSMUST00000095070.4	4023	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	16.2685791225499	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTAGTCCTTTCTTCA	3	True	NA	17	True	TATAAA	-17	NA	59003171	59025573	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59003558_59017669_59017823_59020058_59020530_59022560
transcript_91114.nic	chr4	+	922	4	ISM	ENSMUSG00000070972.14	ENSMUST00000153467.3	2393	5	-66	3568	-45	0	5prime_fragment	FALSE	canonical	2	4	junction_1	33.1595469745224	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAGGGAAAAACAA	-42	True	NA	NA	False	AAAAAG	-3	NA	59003126	59020172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_59003558_59013631_59013856_59017669_59017823_59020058
transcript_91115.nic	chr4	+	704	3	ISM	ENSMUSG00000070972.14	ENSMUST00000095070.4	4023	4	-51	5401	-51	0	5prime_fragment	FALSE	canonical	3	77	junction_1	0.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAGGGAAAAACAA	8805	False	NA	NA	False	AAAAAG	-3	NA	59003120	59020172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_59003558_59017669_59017823_59020058
transcript_91116.known	chr4	+	1192	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	16.5	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTGTTTGGTGTCT	1876	False	NA	35	True	AATAAA	-35	NA	59035087	59041903	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59035319_59039226_59039359_59041074
transcript_91117.known	chr4	+	1294	3	FSM	ENSMUSG00000092345.2	ENSMUST00000174664.2	1294	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	128.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCCATGACAGCAGTAGT	41	True	NA	20	True	AATAAA	-20	NA	59003209	59041888	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59003558_59039226_59039359_59041074
transcript_91120.nnic	chr4	-	2614	12	NNC	ENSMUSG00000038598.10	novel	4664	28	NA	NA	-6776	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	5.11681719253465	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTAAGACCTATTGTAAG	NA	False	NA	NA	False	AATAAA	-12	NA	59117889	59081131	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_59082492_59084250_59084346_59085233_59085343_59086879_59086982_59092350_59092502_59093848_59093934_59094129_59094284_59099251_59099431_59109585_59109668_59111092_59111205_59113897_59113978_59117784
transcript_91122.known	chr4	+	4012	9	FSM	ENSMUSG00000028381.9	ENSMUST00000030074.8	4012	9	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_7	33.8664657146269	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAGTAATGGACTGGCTT	9	False	NA	NA	False	AATAAA	-19	NA	59189256	59222833	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59189742_59207760_59207903_59211875_59211979_59213158_59213261_59213864_59213978_59217035_59217215_59218494_59218582_59219488_59219679_59220222
transcript_91126.known	chr4	-	3295	17	FSM	ENSMUSG00000038578.16	ENSMUST00000040166.14	3295	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	14.4566971936885	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTGGGTTTTGTGGT	31	False	NA	NA	False	TATAAA	-21	NA	59438633	59314682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
transcript_91128.nnic	chr4	-	3461	16	NIC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	201	481	combination_of_known_splicesites	FALSE	canonical	3	11	junction_15	21.7220829776725	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGCTCAACTCCAAGG	232	False	NA	NA	False	NA	NA	NA	59438432	59314201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59438205
transcript_91133.nnic	chr4	-	3434	15	NIC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	39	481	combination_of_known_splicesites	FALSE	canonical	3	9	junction_7	22.6805679661094	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGCTCAACTCCAAGG	70	False	NA	NA	False	NA	NA	NA	59438594	59314201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
transcript_9114.nnic	chr10	-	2307	12	NIC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_10	11.696577164084	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42354407	42188580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42354258
transcript_91142.nnic	chr4	-	2391	14	NNC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	237	3	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	21.203717436716	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGCATTTACCTTTCT	-11	True	NA	NA	False	NA	NA	NA	59438396	59329206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_59329660_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
transcript_91144.nic	chr4	-	2578	14	ISM	ENSMUSG00000038578.16	ENSMUST00000040166.14	3295	17	109	14527	109	0	5prime_fragment	FALSE	canonical	3	63	junction_6	11.6248051456597	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGATTTGCATTTACCTT	140	False	NA	NA	False	NA	NA	NA	59438524	59329209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
transcript_91157.nnic	chr4	-	2813	10	NNC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	-86	-35846	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	26.2429296768614	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATACTATGAATTTTTACA	NA	False	NA	NA	False	AATAAA	-15	NA	59438719	59367802	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_59368924_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
transcript_91160.known	chr4	-	3409	15	FSM	ENSMUSG00000028382.16	ENSMUST00000102883.11	3409	15	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_12	53.5489953029857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTTTGTTAATTATTTC	5	True	NA	-18	True	NA	NA	NA	59549284	59475258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524403_59524477_59546148_59546183_59549147
transcript_91164.known	chr4	-	2016	14	FSM	ENSMUSG00000028382.16	ENSMUST00000148331.9	2016	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_12	40.1538461538462	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGGGGAAAAAATCAGGAAA	5	True	NA	NA	False	NA	NA	NA	59549314	59476647	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524403_59524477_59549147
transcript_91176.known	chr4	+	2611	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATGTGCCTTTTATTTC	0	True	NA	20	True	NA	NA	NA	59581562	59618689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
transcript_91180.known	chr4	+	10856	4	FSM	ENSMUSG00000045071.15	ENSMUST00000070150.11	10856	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	17.7200451466693	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTATGTCTGTTTTCTT	-11	True	NA	NA	False	NA	NA	NA	59626210	59761439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59626492_59690143_59691339_59737561_59737735_59752232
transcript_91182.known	chr4	+	3205	3	FSM	ENSMUSG00000045071.15	ENSMUST00000052420.7	3205	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	48.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTCATTTTTACTGTGG	21	True	NA	NA	False	AATAAA	-11	NA	59626242	59721401	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59626492_59690143_59691339_59719640
transcript_91186.known	chr4	-	3237	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACTGCATATGTTAA	-28	True	NA	NA	False	NA	NA	NA	59783866	59769636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
transcript_91190.known	chr4	-	1438	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACTTTGTAAGGATCCT	30	True	NA	-6	True	ATTAAA	-18	NA	59783808	59771296	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
transcript_91204.known	chr4	-	1654	3	FSM	ENSMUSG00000038544.15	ENSMUST00000128548.2	1654	3	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_2	17	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTTATATAATTATTTT	0	True	NA	NA	False	AATAAA	-20	NA	59783838	59774087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_59775550_59782253_59782335_59783727
transcript_91208.known	chr4	-	1450	2	FSM	ENSMUSG00000038544.15	ENSMUST00000138097.2	1450	2	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAAATACTAA	-11	True	NA	NA	False	AATGAA	-23	NA	59783849	59781006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_59782335_59783727
transcript_9121.known	chr10	+	1401	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	0	0	0	0	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	1267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	12	True	AATAAA	-13	NA	42378026	42411366	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
transcript_91212.known	chr4	+	7314	9	FSM	ENSMUSG00000028385.15	ENSMUST00000030080.7	7314	9	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	10.264471491509	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCATGTGCTCATTTTTG	-32	True	NA	18	True	AATAAA	-27	NA	59805839	59904737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59806226_59857444_59857637_59868237_59868349_59879221_59879381_59884979_59885176_59886406_59886607_59892461_59892549_59894524_59894678_59898907
transcript_91219.known	chr4	+	642	7	FSM	ENSMUSG00000078689.9	ENSMUST00000107521.8	642	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	4.92442890089805	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGTGCAATCCTGGTT	16	False	NA	NA	False	NA	NA	NA	59964293	60007120	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_59964368_60003977_60004112_60004813_60004888_60005471_60005583_60005921_60006024_60006188_60006235_60007019
transcript_91220.known	chr4	-	927	7	FSM	ENSMUSG00000073842.11	ENSMUST00000079697.10	927	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTCTTTGTGTCCAGA	64	False	NA	NA	False	AATAAA	-21	NA	60070411	60066469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_60066723_60067509_60067556_60067719_60067822_60068164_60068276_60068900_60068975_60069732_60069867_60070204
transcript_91221.known	chr4	-	928	7	FSM	ENSMUSG00000078672.3	ENSMUST00000074018.4	928	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCGTCTGTGTCCAAA	NA	False	NA	NA	False	AATAAA	-21	NA	61972395	61968470	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_61968724_61969508_61969555_61969718_61969821_61970137_61970249_61970872_61970947_61971716_61971851_61972187
transcript_91222.known	chr4	-	1776	4	FSM	ENSMUSG00000028389.13	ENSMUST00000221329.2	1776	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	10.3708994574027	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGGAAACCTGACAACTG	NA	False	NA	NA	False	NA	NA	NA	62126598	62109400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126565
transcript_91225.known	chr4	+	1820	4	FSM	ENSMUSG00000066152.12	ENSMUST00000084530.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	15.369522511198	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGTTGGTCCGTTTC	NA	False	NA	9	True	AATAAA	-20	NA	62204685	62216648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_62204812_62210868_62210936_62214123_62214314_62215211
transcript_91229.known	chr4	-	4264	28	FSM	ENSMUSG00000066151.13	ENSMUST00000084527.10	4264	28	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_18	17.8933741789013	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTTCCTTTTTGGG	6994	False	NA	-1	True	NA	NA	NA	62278707	62218578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239195_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
transcript_91231.nnic	chr4	-	4300	28	NIC	ENSMUSG00000066151.13	novel	4264	28	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	24.7540992988791	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTTCCTTTTTGGG	6928	False	NA	-1	True	NA	NA	NA	62278773	62218578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239225_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
transcript_91235.nic	chr4	-	2862	26	ISM	ENSMUSG00000066151.13	ENSMUST00000084527.10	4264	28	-24	4529	0	-3661	5prime_fragment	FALSE	canonical	3	62	junction_16	15.6401534519326	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAGGAAGAGGAAGAGGA	6970	False	NA	NA	False	NA	NA	NA	62278731	62223107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239195_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
transcript_91237.known	chr4	-	3329	21	FSM	ENSMUSG00000066151.13	ENSMUST00000084528.10	3329	21	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_11	12.2723265927859	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCAAGGCCAGCCTCCT	6916	False	NA	NA	False	NA	NA	NA	62278785	62229508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62230632_62232490_62232663_62239195_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
transcript_91238.known	chr4	-	2337	19	FSM	ENSMUSG00000066151.13	ENSMUST00000107461.2	2337	19	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_9	12.2877033786216	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAGAAAACAAAAA	6930	False	NA	NA	False	NA	NA	NA	62278771	62238878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
transcript_9124.known	chr10	+	1057	3	FSM	ENSMUSG00000019804.13	ENSMUST00000105499.2	1057	3	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	903	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTGCACGGCCTCCAG	NA	False	NA	23	True	AATAAA	-24	NA	42378285	42411377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_42378489_42409144_42409270_42410648
transcript_91243.nnic	chr4	-	2417	10	NNC	ENSMUSG00000066151.13	novel	3279	18	NA	NA	17626	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_9	34.5643075733435	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTTCCTTTTTGGG	NA	False	NA	-1	True	NA	NA	NA	62232905	62218578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62232796
transcript_91244.known	chr4	-	1739	4	FSM	ENSMUSG00000066151.13	ENSMUST00000131977.2	1739	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	12.5698050899765	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAAATAAATTAT	6995	False	NA	NA	False	NA	NA	NA	62278706	62262373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62263815_62264293_62264379_62270669_62270783_62278606
transcript_91249.known	chr4	+	3718	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	0	0	0	0	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTCTGTCTACACACT	NA	False	NA	23	True	AATAAA	-23	NA	62278963	62310006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
transcript_91251.known	chr4	-	819	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGACGTCCTTAAAGGT	2664	False	NA	NA	False	AATAAA	-18	NA	62326879	62312819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
transcript_91253.known	chr4	-	654	3	FSM	ENSMUSG00000066149.12	ENSMUST00000107459.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	175	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCTTAACTGATTTTTG	2681	False	NA	NA	False	NA	NA	NA	62326862	62312870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62313259_62320960_62321153_62326788
transcript_9126.known	chr10	+	3006	6	FSM	ENSMUSG00000038280.13	ENSMUST00000040718.6	3006	6	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_2	7.54718490564528	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATGTTGTAATTGAAT	NA	False	NA	9	True	AATAAA	-18	NA	42554911	42578455	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_42555394_42559155_42559271_42568906_42569005_42572245_42572414_42574103_42574270_42576478
transcript_91271.known	chr4	+	5223	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGACAGCTTAGTCTAT	NA	False	NA	NA	False	AATAAA	-18	NA	62327033	62345227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
transcript_91292.known	chr4	-	2549	11	FSM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	54.6457683631587	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	62389124	62370868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388948
transcript_91293.known	chr4	-	1437	11	FSM	ENSMUSG00000028391.17	ENSMUST00000107452.8	1437	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	57	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGATTTGAAAAATCAGG	NA	False	NA	96	True	NA	NA	NA	62389124	62371870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381711_62382163_62382307_62387073_62387171_62389055
transcript_9131.known	chr10	+	6032	21	FSM	ENSMUSG00000019802.14	ENSMUST00000019937.5	6032	21	0	0	0	0	multi-exon	TRUE	canonical	3	208	junction_15	23.0789947788026	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCCCTGATTTCGGTG	NA	False	NA	NA	False	NA	NA	NA	42637491	42708510	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_42637885_42659437_42659538_42665295_42665411_42667174_42667288_42670770_42670833_42672201_42672261_42673678_42673730_42674742_42674852_42677628_42677724_42677817_42677951_42679885_42679979_42681071_42681227_42682519_42682668_42686838_42686922_42688431_42688492_42688660_42688835_42691050_42691210_42692363_42692466_42699876_42699976_42703872_42703978_42704886
transcript_91318.known	chr4	+	1757	7	FSM	ENSMUSG00000028392.16	ENSMUST00000030088.12	1757	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_6	6.83130051063973	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTTTGCTGGTAACTG	9556	False	NA	28	True	AATAAA	-39	NA	62398289	62415535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_62398675_62400854_62400954_62404649_62404881_62406422_62406449_62412969_62413095_62414234_62414809_62415218
transcript_91320.known	chr4	+	2167	6	FSM	ENSMUSG00000028392.16	ENSMUST00000107449.4	2167	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	4.63033476111609	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTTTGCTGGTAACTG	9556	False	NA	28	True	AATAAA	-39	NA	62398289	62415535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_62398675_62400854_62400954_62404649_62404881_62406422_62406449_62412969_62413095_62414234
transcript_91322.known	chr4	-	1205	2	FSM	ENSMUSG00000038422.3	ENSMUST00000037820.3	1205	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTGTGTTCCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	62420513	62417244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62418331_62420394
transcript_91324.known	chr4	-	1206	12	FSM	ENSMUSG00000028393.11	ENSMUST00000030090.4	1206	12	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	45.4718149012465	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438155	62427405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
transcript_91327.known	chr4	-	1769	11	FSM	ENSMUSG00000028393.11	ENSMUST00000137448.2	1769	11	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	41.725771412881	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438118	62427405	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
transcript_91331.known	chr4	-	1945	4	FSM	ENSMUSG00000028394.10	ENSMUST00000128100.2	1945	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	150.086641644085	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCATACAATGTGCTTT	NA	False	NA	1	True	AATAAA	-22	NA	62443305	62440885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62442348_62442554_62442674_62442846_62443073_62443167
transcript_91332.known	chr4	-	1805	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCATACAATGTGCTTT	NA	False	NA	1	True	AATAAA	-22	NA	62443305	62440885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
transcript_91340.nic	chr4	+	4408	23	NIC	ENSMUSG00000059810.19	novel	2072	18	NA	NA	-193	0	combination_of_known_junctions	TRUE	canonical	2	39	junction_18	14.1957973061405	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGTGTATTCCTGGT	NA	False	NA	1	True	AATAAA	-21	NA	62501644	62621255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62533537_62533599_62534710_62534802_62535311_62535368_62542081_62542164_62543333_62543440_62543978_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62607735_62608864_62615507_62615570_62618234_62618337_62618590_62618653_62619270_62619438_62620296
transcript_91342.known	chr4	+	2072	18	FSM	ENSMUSG00000059810.19	ENSMUST00000098031.10	2072	18	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_17	16.975863182644	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAAAACAGGAGGCTAAGT	NA	False	NA	NA	False	NA	NA	NA	62501837	62575676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62533537_62533599_62534710_62534802_62535311_62535368_62542081_62542164_62543333_62543440_62543978_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62575339
transcript_91350.nic	chr4	+	2636	7	NIC	ENSMUSG00000059810.19	novel	496	2	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	17.9071680247511	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGTGTATTCCTGGT	NA	False	NA	1	True	AATAAA	-21	NA	62581873	62621255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_62582030_62607735_62608864_62615507_62615570_62618234_62618337_62618590_62618653_62619270_62619438_62620296
transcript_91351.nnic	chr4	+	669	5	NNC	ENSMUSG00000059810.19	novel	2072	18	NA	NA	-193	-16513	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	32.2286751201473	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCGTGTGTTCTGGCCTC	NA	False	NA	NA	False	NA	NA	NA	62501644	62525640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525482
transcript_91358.nnic	chr4	-	5306	22	NNC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	-7367	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	7.87947763499926	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGTGGCTGTGCTGTGT	NA	False	NA	NA	False	AATAAA	-38	NA	63328958	63285361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124_63298326_63298435_63298600_63299964_63300167_63300579_63300708_63302123_63302184_63304466_63304622_63305233_63305391_63310368_63310444_63312822_63313872_63316111_63316477_63328903
transcript_91361.nic	chr4	-	2256	8	ISM	ENSMUSG00000039158.12	ENSMUST00000035724.5	5387	22	26264	0	4113	0	3prime_fragment	FALSE	canonical	3	30	junction_5	4.59369576880387	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGTGGCTGTGCTGTGT	NA	False	NA	NA	False	AATAAA	-38	NA	63295327	63285361	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067
transcript_91365.known	chr4	-	4049	13	FSM	ENSMUSG00000039137.19	ENSMUST00000084510.8	4049	13	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	13.1664029509455	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGCCAGTGTTCTATGCT	4518	False	NA	-7	True	AATAAA	-18	NA	63414188	63333146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_63333904_63334238_63334362_63334648_63334831_63336324_63336860_63337658_63337731_63347322_63347356_63350086_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
transcript_91367.known	chr4	-	4013	12	FSM	ENSMUSG00000039137.19	ENSMUST00000102867.8	4013	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	11.3705433554579	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGCCAGTGTTCTATGCT	4518	False	NA	-7	True	AATAAA	-18	NA	63414188	63333146	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_63333904_63334238_63334362_63334648_63334828_63336324_63336860_63337658_63337731_63350086_63350297_63350901_63351115_63352346_63352384_63353596_63353800_63379518_63379645_63390886_63391106_63412849
transcript_91373.nic	chr4	-	2572	4	ISM	ENSMUSG00000039137.19	ENSMUST00000063672.10	2804	7	-86	3368	-86	0	5prime_fragment	FALSE	canonical	3	35	junction_2	7.71722460186015	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTTCTGGTTGTTTCTT	4392	False	NA	NA	False	AGTAAA	-1	NA	63414314	63353037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_63353800_63379518_63379645_63390886_63391106_63412849
transcript_91374.known	chr4	-	797	4	FSM	ENSMUSG00000039137.19	ENSMUST00000133425.2	797	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	15.1070255914995	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGTGTAATGAAACTCACT	5710	False	NA	NA	False	AATAAA	-15	NA	63412996	63378399	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_63378705_63379518_63379645_63390886_63391106_63412849
transcript_91375.known	chr4	-	872	3	FSM	ENSMUSG00000039137.19	ENSMUST00000140720.2	872	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	9	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTGGTGTAAGGTGGGT	5792	False	NA	NA	False	NA	NA	NA	63412914	63379056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_63379645_63390886_63391106_63412849
transcript_91379.known	chr4	+	1135	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	2211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGAGCAGAATTTCATCT	NA	False	NA	NA	False	AATACA	-20	NA	63463008	63468987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_63463237_63466821_63466923_63468181
transcript_91390.nnic	chr4	+	3860	10	NNC	ENSMUSG00000045917.18	novel	3765	10	NA	NA	-323	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	20.5414365925061	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGTAAGGGACCATGTT	NA	False	NA	18	True	AATAAA	-18	NA	63476694	63504594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_63476967_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
transcript_91391.known	chr4	+	3765	10	FSM	ENSMUSG00000045917.18	ENSMUST00000077709.11	3765	10	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.4901997962622	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGTAAGGGACCATGTT	NA	False	NA	18	True	AATAAA	-18	NA	63477017	63504594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_63477195_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
transcript_91399.nic	chr4	+	3821	10	NIC	ENSMUSG00000045917.18	novel	3765	10	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	22.7888861801829	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGTAAGGGACCATGTT	NA	False	NA	18	True	AATAAA	-18	NA	63476991	63504594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_63477195_63479118_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
transcript_91407.known	chr4	+	3194	2	FSM	ENSMUSG00000051675.14	ENSMUST00000050850.14	3194	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	20	True	AATAAA	-21	NA	65523222	65534475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_65523307_65531365
transcript_91408.known	chr4	+	3191	2	FSM	ENSMUSG00000051675.14	ENSMUST00000107366.2	3191	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	20	True	AATAAA	-21	NA	65523222	65534475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_65523307_65531368
transcript_91409.known	chr4	-	3212	8	FSM	ENSMUSG00000028351.6	ENSMUST00000030036.6	3212	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.451753951452626	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTCCTCTTTATGC	NA	False	NA	NA	False	GATAAA	-21	NA	68872634	68679750	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_68681384_68711061_68711285_68716924_68717162_68745052_68745159_68747522_68747693_68759453_68759645_68822973_68823242_68872250
transcript_91412.nnic	chr4	-	898	2	Genic_Genomic	ENSMUSG00000046341.6	novel	450	1	NA	NA	-94	456	multi-exon	FALSE	canonical	2	29	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAGGGAAGGATGTGAT	NA	False	NA	NA	False	AATAAA	-43	NA	69844410	69843410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_-_69844194_69844295
transcript_91418.known	chr4	-	11847	37	FSM	ENSMUSG00000039298.17	ENSMUST00000144099.8	11847	37	0	0	0	0	multi-exon	TRUE	canonical	3	146	junction_29	30.4796025702355	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTATTATATTCATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	70328680	70135092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
transcript_91428.nic	chr4	-	4643	30	NIC	ENSMUSG00000039298.17	novel	11847	37	NA	NA	-1	-2906	combination_of_known_junctions	FALSE	canonical	3	51	junction_2	33.0968743472502	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTCAGAGGCCACCAGCA	NA	False	NA	NA	False	NA	NA	NA	70328681	70163613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_70163735_70165184_70165212_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
transcript_91430.nic	chr4	-	4790	29	ISM	ENSMUSG00000039298.17	ENSMUST00000144099.8	11847	37	-175	28521	-175	-2906	5prime_fragment	FALSE	canonical	3	146	junction_21	15.2534288550717	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTCAGAGGCCACCAGCA	NA	False	NA	NA	False	NA	NA	NA	70328855	70163613	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_70163735_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
transcript_91436.nic	chr4	-	1200	10	ISM	ENSMUSG00000039298.17	ENSMUST00000144099.8	11847	37	-104	135877	-104	46153	5prime_fragment	FALSE	canonical	3	146	junction_2	17.5632894357085	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACTTAAAGAGTTATAAAG	NA	False	NA	NA	False	AAGAAA	-3	NA	70328784	70270969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
transcript_91439.known	chr4	-	459	1	FSM	ENSMUSG00000083914.4	ENSMUST00000120838.2	459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGGCCTTTGCTGTT	NA	False	NA	NA	False	AAGAAA	-4	NA	71289433	71288974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_71289000_71289400
transcript_91446.known	chr4	-	2569	20	FSM	ENSMUSG00000008305.19	ENSMUST00000030095.11	2569	20	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_14	72.1381791945633	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAACAGAAACAACAT	NA	False	NA	NA	False	AATAGA	-17	NA	72118389	72036441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72075699_72075717_72076449_72076655_72087328_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
transcript_91448.known	chr4	-	3644	20	FSM	ENSMUSG00000008305.19	ENSMUST00000072695.13	3644	20	0	0	0	0	multi-exon	TRUE	canonical	3	132	junction_8	62.2917361117158	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTCCTCCTTGACTC	NA	False	NA	81	True	AGTAAA	-18	NA	72119094	72036041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72075699_72075717_72076449_72076655_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
transcript_91449.known	chr4	-	3660	20	FSM	ENSMUSG00000008305.19	ENSMUST00000102848.9	3660	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_19	75.9211575298008	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGTCTTCCTCCTTGAC	NA	False	NA	79	True	AGTAAA	-16	NA	72119091	72036043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056923_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72075699_72075717_72076449_72076655_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117659_72118218
transcript_9146.known	chr10	+	2127	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	43097481	43316598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
transcript_91466.nnic	chr4	-	3526	18	NIC	ENSMUSG00000008305.19	novel	3644	20	NA	NA	-42	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_12	75.0867088160778	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTCCTCCTTGACTC	NA	False	NA	81	True	AGTAAA	-18	NA	72119198	72036041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546_72063658_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
transcript_91482.known	chr4	-	2067	7	FSM	ENSMUSG00000008305.19	ENSMUST00000107337.8	2067	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	41.6959896819293	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGCCTGTGTTCTAATTA	NA	False	NA	0	True	AATAAA	-20	NA	72119099	72075816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_72076655_72087358_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
transcript_91486.nic	chr4	-	2289	7	ISM	ENSMUSG00000008305.19	ENSMUST00000030095.11	2569	20	-905	39378	-138	-3	5prime_fragment	FALSE	canonical	3	29	junction_1	99.9656885580692	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGGCCTGTGTTCTAA	NA	False	NA	-3	True	AATAAA	-17	NA	72119294	72075819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_72076655_72087328_72087434_72088944_72089008_72116009_72116055_72116154_72116219_72117533_72117635_72118218
transcript_91493.known	chr4	+	4196	22	FSM	ENSMUSG00000028397.14	ENSMUST00000030102.12	4196	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	55.9303502727513	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTCTTCTGTCTGTCA	NA	False	NA	14	True	ATTAAA	-15	NA	74170172	74324097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_74170324_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
transcript_91495.nnic	chr4	+	4365	22	NNC	ENSMUSG00000028397.14	novel	1844	8	NA	NA	158	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	71.2580822483617	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTCTTCTGTCTGTCA	NA	False	NA	14	True	ATTAAA	-15	NA	74170330	74324097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_74170651_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
transcript_91499.nnic	chr4	+	4161	21	NIC	ENSMUSG00000028397.14	novel	4196	22	NA	NA	-80	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	72.8474433319386	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTCTTCTGTCTGTCA	NA	False	NA	14	True	ATTAAA	-15	NA	74170092	74324097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_74170324_74181045_74181207_74189430_74189607_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
transcript_91514.nic	chr4	+	1343	9	ISM	ENSMUSG00000028397.14	ENSMUST00000030102.12	4196	22	-80	75032	-80	-732	5prime_fragment	FALSE	canonical	0	0	junction_5	74.7959724851546	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGAAAGCCTCCCAAGAG	NA	False	NA	NA	False	AGTAAA	-26	NA	74170092	74249065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_74170324_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891
transcript_91518.nic	chr4	+	581	4	ISM	ENSMUSG00000028397.14	ENSMUST00000030102.12	4196	22	-36	124907	-36	7294	5prime_fragment	FALSE	canonical	3	203	junction_1	11.6714276000077	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACTTTTGTGGCACCTA	NA	False	NA	NA	False	NA	NA	NA	74170136	74199190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_74170324_74181045_74181207_74189430_74189607_74199133
transcript_91519.known	chr4	-	741	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	0	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTAGTTCTTTTAATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	75196542	75195590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_75196007_75196217
transcript_91521.known	chr4	+	749	1	FSM	ENSMUSG00000083496.2	ENSMUST00000121853.2	749	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	79245944	79246693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_79245900_79246700
transcript_91522.known	chr4	+	3066	2	FSM	ENSMUSG00000048706.4	ENSMUST00000055922.4	3066	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTGGTGTTATATTTT	NA	False	NA	NA	False	ATTAAA	-2	NA	80828882	80873865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_80829883_80871799
transcript_91524.known	chr4	-	8429	9	FSM	ENSMUSG00000008575.18	ENSMUST00000064770.9	8429	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6.11861912526021	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTCTGGCCTCGTGTTTT	NA	False	NA	-3	True	AATAAA	-15	NA	82423545	82208412	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_82215049_82245965_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
transcript_91526.known	chr4	-	2699	8	FSM	ENSMUSG00000008575.18	ENSMUST00000122918.8	2699	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	4.89064079103534	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAGAAAAAAAAACCTT	NA	False	NA	NA	False	NA	NA	NA	82423547	82245061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
transcript_91527.known	chr4	-	3835	2	FSM	ENSMUSG00000008575.18	ENSMUST00000135024.2	3835	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAGAAAAAAAATATTTATA	NA	False	NA	NA	False	AAGAAA	-28	NA	82424016	82414220	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_82417007_82422967
transcript_91530.known	chr4	-	8763	9	FSM	ENSMUSG00000028403.16	ENSMUST00000030110.15	8763	9	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	13.8293166859393	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGTTTTTATCCTCTTA	NA	False	NA	-10	True	AATAAA	-18	NA	82777910	82716974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_82724699_82725249_82725294_82738566_82738684_82753682_82753822_82756512_82756625_82762340_82762440_82765779_82765977_82772205_82772353_82777726
transcript_91536.known	chr4	-	8831	20	FSM	ENSMUSG00000038172.15	ENSMUST00000102823.10	8831	20	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	31.1407314036548	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTCTTCTATTTGATG	NA	False	NA	-12	True	AATAAA	-16	NA	83242492	83138536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_83145462_83148644_83148762_83150947_83151066_83155478_83155588_83158304_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_9154.known	chr10	-	860	4	FSM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	0	0	0	0	multi-exon	TRUE	canonical	3	617	junction_3	154.165135127528	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTCACCGGAGCACTCT	NA	False	NA	-12	True	AATAAA	-17	NA	43416964	43401128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_43401405_43406593_43406667_43408671_43409154_43416935
transcript_91547.known	chr4	-	1804	16	FSM	ENSMUSG00000038172.15	ENSMUST00000048274.11	1804	16	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	23.0820757780192	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAATTCAATTTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	83242476	83158046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_91551.known	chr4	-	842	7	FSM	ENSMUSG00000038172.15	ENSMUST00000030205.14	842	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	86.0905531015647	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGCTCTATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	83242426	83177434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_83177704_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_91553.known	chr4	-	3251	16	FSM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_5	345.826738892951	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTATTAGTAAGTTATTAT	NA	False	NA	-4	True	ATTAAA	-16	NA	83404696	83373916	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_83375317_83376311_83376424_83378080_83378295_83378390_83378493_83378695_83378767_83379422_83379479_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91558.nnic	chr4	-	1946	11	NNC	ENSMUSG00000028484.17	novel	1898	11	NA	NA	-101	0	at_least_one_novel_splicesite	FALSE	canonical	3	221	junction_1	470.836925060047	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	NA	False	NA	94	True	AATAAA	-19	NA	83404797	83380107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_83380657_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91559.known	chr4	-	1898	11	FSM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	432.133081353418	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	NA	False	NA	94	True	AATAAA	-19	NA	83404695	83380107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_83380711_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91560.known	chr4	-	1973	11	FSM	ENSMUSG00000028484.17	ENSMUST00000107214.9	1973	11	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	501.525034270474	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	NA	False	NA	94	True	AATAAA	-19	NA	83404690	83380107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_83380791_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91561.nic	chr4	-	3045	10	ISM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	-25	6191	-25	0	5prime_fragment	FALSE	canonical	3	1502	junction_9	115.542200082913	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	NA	False	NA	94	True	AATAAA	-19	NA	83404721	83380107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91565.known	chr4	+	1405	9	FSM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_6	50.2767341819255	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGATTCTTTTCTCCAA	NA	False	NA	18	True	TATAAA	-18	NA	83335960	83371577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
transcript_91567.nic	chr4	-	1096	9	ISM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	-22	3156	-21	-2197	5prime_fragment	FALSE	canonical	3	1502	junction_8	119.309471543545	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGGAAGAAAGAAGTTGA	NA	False	NA	65	True	NA	NA	NA	83404717	83383263	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91568.nic	chr4	-	1235	9	ISM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	-215	3210	-214	-2251	5prime_fragment	FALSE	canonical	3	1502	junction_8	119.309471543545	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAAGAAGGCCAAAAGGA	NA	False	NA	11	True	AAAAAG	-40	NA	83404910	83383317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91569.nic	chr4	-	999	8	ISM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	-48	4836	-47	-3877	5prime_fragment	FALSE	canonical	3	1502	junction_7	121.112024378175	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTTTGGAATACAAAATT	NA	False	NA	NA	False	NA	NA	NA	83404743	83384943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91570.known	chr4	+	942	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	22.8875512014719	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTCTAGTCCCCTTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	83335967	83360323	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
transcript_91571.nic	chr4	-	795	6	ISM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	-22	11176	-21	3251	5prime_fragment	FALSE	canonical	3	1502	junction_5	125.585667972106	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAAGGTAATTTCTTAAA	NA	False	NA	NA	False	ACTAAA	-45	NA	83404717	83391283	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91575.nic	chr4	-	618	4	ISM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	-22	14427	-21	0	5prime_fragment	FALSE	canonical	3	1502	junction_3	112.270506664336	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTCAAGTCAACAGGTGA	NA	False	NA	NA	False	AATGAA	-36	NA	83404717	83394534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_83394658_83400693_83400771_83403953_83404166_83404511
transcript_91577.known	chr4	-	354	1	FSM	ENSMUSG00000066116.4	ENSMUST00000084445.4	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	83423775	83423421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_83423400_83423800
transcript_9158.nic	chr10	-	375	2	ISM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	-61	7740	-35	281	5prime_fragment	FALSE	canonical	3	617	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTACGAAAAAGACCCTGCA	NA	False	NA	NA	False	TATAAA	-11	NA	43417025	43408868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_43409154_43416935
transcript_91587.known	chr4	-	4133	8	FSM	ENSMUSG00000028487.19	ENSMUST00000102820.9	4133	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	4.23782770691181	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	84593271	84193331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_84194685_84209929_84211900_84309125_84309362_84332482_84332586_84424764_84424849_84464441_84464643_84474015_84474142_84593211
transcript_91588.known	chr4	-	3948	7	FSM	ENSMUSG00000028487.19	ENSMUST00000107198.9	3948	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	2.98142396999972	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAATTGTATTGATGGT	NA	False	NA	NA	False	NA	NA	NA	84593304	84193465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_84194685_84209929_84211900_84309125_84309362_84332482_84332586_84464441_84464643_84474015_84474142_84593211
transcript_9159.known	chr10	+	563	1	FSM	ENSMUSG00000045886.8	ENSMUST00000057649.8	563	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	387	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	43400079	43400642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_43400100_43400600
transcript_91590.known	chr4	+	2822	9	FSM	ENSMUSG00000028488.16	ENSMUST00000030212.15	2822	9	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	17.2191753577226	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	28	True	AATAAA	-18	NA	85123677	85307617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790
transcript_91596.nic	chr4	+	2049	2	ISM	ENSMUSG00000028488.16	ENSMUST00000107184.8	671	5	-109	28715	-15	-28715	5prime_fragment	FALSE	canonical	3	264	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTAACTCAGTGTCTCT	NA	False	NA	NA	False	CATAAA	-4	NA	85123662	85267213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_85123859_85265360
transcript_91599.known	chr4	+	1618	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	290	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTTTGAAATAATTTGC	NA	False	NA	19	True	AATAAA	-19	NA	86493904	86495522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_86493900_86495500
transcript_916.known	chr1	-	3064	19	FSM	ENSMUSG00000037470.15	ENSMUST00000174716.8	3064	19	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_12	108.960747264528	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36283188	36217685	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250477_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
transcript_9160.known	chr10	+	456	2	FSM	ENSMUSG00000045886.8	ENSMUST00000216543.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCGGTGGTCATGGTGT	NA	False	NA	NA	False	AATAAA	-45	NA	43400101	43400641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_43400172_43400255
transcript_91602.known	chr4	-	6158	17	FSM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_2	24.1993672437938	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGAATTCCCTGTATT	NA	False	NA	-7	True	AATAAA	-16	NA	86530292	86497091	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_86500256_86501117_86502111_86503564_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
transcript_91614.nic	chr4	-	1276	9	ISM	ENSMUSG00000038047.19	ENSMUST00000128381.8	2302	15	-16	10379	-16	7467	5prime_fragment	FALSE	canonical	3	135	junction_6	18.4390889145858	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAATTTCAGAGGGAAAGA	NA	False	NA	NA	False	AATAAA	-24	NA	86530308	86513642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
transcript_91615.nic	chr4	-	898	6	ISM	ENSMUSG00000038047.19	ENSMUST00000128381.8	2302	15	-16	16203	-16	1643	5prime_fragment	FALSE	canonical	3	135	junction_3	22.7771815640127	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGGCAAGTGACTTTT	NA	False	NA	NA	False	NA	NA	NA	86530308	86519466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
transcript_9162.known	chr10	+	1816	2	FSM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTCTGTTGAATTTAT	NA	False	NA	10	True	AATAAA	-19	NA	43455164	43460261	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_43455319_43458599
transcript_91620.known	chr4	-	1888	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTATGTTGTTACATGT	NA	False	NA	NA	False	AAGAAA	-42	NA	86588297	86574801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
transcript_91624.known	chr4	+	7940	33	FSM	ENSMUSG00000038024.18	ENSMUST00000082026.14	7940	33	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_19	11.8372756050537	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCTGTTGAATTTC	8171	False	NA	NA	False	AATAAA	-16	NA	86666791	86768840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_86667150_86692474_86692797_86695949_86696203_86698071_86698142_86699778_86699949_86704284_86704524_86707061_86707129_86708140_86708200_86709563_86709709_86713358_86713535_86716280_86716382_86717589_86717809_86721143_86721290_86723606_86723643_86723731_86723863_86725664_86725798_86729649_86729857_86730561_86730691_86731629_86731775_86732018_86732166_86738098_86738219_86739563_86739708_86743154_86744318_86746204_86746386_86747156_86747267_86747727_86747904_86754616_86754800_86755617_86755814_86757868_86758115_86759221_86759340_86763063_86763215_86766194_86766260_86767006
transcript_91627.known	chr4	-	878	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775649	86772896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
transcript_9163.known	chr10	-	1981	11	FSM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	11.040380428228	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGGATTTTACTATAAT	NA	False	NA	NA	False	TATAAA	-6	NA	43777741	43750183	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
transcript_91630.known	chr4	-	639	4	FSM	ENSMUSG00000028495.15	ENSMUST00000123229.8	639	4	0	0	0	0	multi-exon	FALSE	canonical	3	18159	junction_1	2678.8979077225	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGATTACGAAGGCATT	NA	False	NA	NA	False	NA	NA	NA	86775591	86773988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_86774251_86774382_86774594_86774964_86775097_86775557
transcript_91632.known	chr4	+	4216	6	FSM	ENSMUSG00000038007.15	ENSMUST00000045224.14	4216	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.00665927567458	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAAATTATTTCTTTC	NA	False	NA	26	True	AATAAA	-17	NA	86792632	86839112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_86792834_86804394_86804510_86805260_86805403_86818718_86818857_86829852_86829991_86835630
transcript_91633.nic	chr4	+	4279	5	ISM	ENSMUSG00000038007.15	ENSMUST00000045224.14	4216	6	11498	0	11480	0	3prime_fragment	FALSE	canonical	2	7	junction_3	2.29128784747792	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAAATTATTTCTTTC	7564	False	NA	26	True	AATAAA	-17	NA	86804130	86839112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_86804510_86805260_86805403_86818718_86818857_86829852_86829991_86835630
transcript_91634.known	chr4	+	2943	2	FSM	ENSMUSG00000038007.15	ENSMUST00000135874.2	2943	2	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATGGGATAGAAAGTAT	4120	False	NA	NA	False	NA	NA	NA	86848927	86853059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_86849080_86850268
transcript_91637.known	chr4	-	6069	11	FSM	ENSMUSG00000028496.18	ENSMUST00000078090.12	6069	11	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_9	3.7	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGACTCCTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	87951601	87688161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_87692384_87700523_87700596_87701885_87701958_87707523_87707624_87710089_87710220_87712172_87712249_87758918_87759627_87792074_87792219_87798302_87798386_87949760_87949942_87951320
transcript_91640.known	chr4	+	5791	44	FSM	ENSMUSG00000038368.17	ENSMUST00000097992.10	5791	44	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_35	26.0666035463672	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATGTGACTTTTATTTT	NA	False	NA	10	True	AGTAAA	-19	NA	88012866	88329243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88114995_88115254_88147559_88147665_88148069_88148172_88148688_88148820_88150892_88151020_88192334_88192470_88196445_88196497_88197456_88197541_88215220_88215339_88221681_88221868_88228028_88228151_88244379_88244473_88249205_88249295_88254404_88254450_88257421_88257531_88260439_88260557_88262815_88263055_88267040_88267131_88273604_88273753_88275680_88275801_88277483_88277607_88278063_88278142_88278753_88278826_88286909_88287013_88288991_88289073_88310195_88310325_88311769_88311886_88315211_88315473_88316078_88316169_88319253_88319432_88321547_88321646_88325349_88325602_88327157_88327234_88328853
transcript_91641.nic	chr4	+	5558	43	NIC	ENSMUSG00000038368.17	novel	5791	44	NA	NA	-26	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_34	31.831445611301	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAATGTGACTTTTATT	NA	False	NA	8	True	AGTAAA	-17	NA	88012839	88329241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88147559_88147665_88148069_88148172_88148688_88148820_88150892_88151020_88192334_88192470_88196445_88196497_88197456_88197541_88215220_88215339_88221681_88221868_88228028_88228151_88244379_88244473_88249205_88249295_88254404_88254450_88257421_88257531_88260439_88260557_88262815_88263055_88267040_88267131_88273604_88273753_88275680_88275801_88277483_88277607_88278063_88278142_88278753_88278826_88286909_88287013_88288991_88289073_88310195_88310325_88311769_88311886_88315211_88315473_88316078_88316169_88319253_88319432_88321547_88321646_88325349_88325602_88327157_88327234_88328853
transcript_91647.known	chr4	-	2089	7	FSM	ENSMUSG00000028497.13	ENSMUST00000030221.3	2089	7	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	2.26691175145591	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAAAAAAAAAAGTGAAACA	NA	False	NA	NA	False	NA	NA	NA	88357163	88331166	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_88332584_88337935_88338062_88341227_88341335_88344972_88345086_88353175_88353304_88355696_88355801_88357069
transcript_91648.known	chr4	-	4174	1	FSM	ENSMUSG00000070923.5	ENSMUST00000094993.3	4174	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTGTATTGCTTTTTT	NA	False	NA	-1	True	NA	NA	NA	88640702	88636528	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_88636500_88640700
transcript_91652.known	chr4	+	2797	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATCAGATTATACTTGA	5048	False	NA	NA	False	NA	NA	NA	89055358	89099318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
transcript_91658.known	chr4	-	895	3	FSM	ENSMUSG00000044303.7	ENSMUST00000107131.2	895	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGGCCGCGAAGGGAATAA	NA	False	NA	-73	True	NA	NA	NA	89212890	89192777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_89193012_89194881_89195223_89212570
transcript_91659.known	chr4	-	1390	2	FSM	ENSMUSG00000073802.6	ENSMUST00000097981.6	1390	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAGTTCAACTTGGTTT	NA	False	NA	NA	False	AAGAAA	-18	NA	89229276	89224535	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_89225552_89228902
transcript_91664.known	chr4	-	3730	7	FSM	ENSMUSG00000008489.19	ENSMUST00000008633.15	3730	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	42.0571700849636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTATCTTTAAATACAT	NA	False	NA	2	True	AATAAA	-20	NA	91260291	91138999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_91141808_91142377_91142417_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
transcript_91666.known	chr4	-	3671	6	FSM	ENSMUSG00000008489.19	ENSMUST00000107110.8	3671	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	41.6461282714252	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTATCTTTAAATACAT	NA	False	NA	2	True	AATAAA	-20	NA	91260271	91138999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_91141808_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
transcript_91670.nic	chr4	-	2824	6	NIC	ENSMUSG00000008489.19	novel	3797	7	NA	NA	-27	-900	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	36.2082863444267	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTATAACCATAGGTTTT	NA	False	NA	NA	False	TATAAA	-31	NA	91260333	91139905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_91141805_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
transcript_91674.known	chr4	-	1374	1	FSM	ENSMUSG00000054000.6	ENSMUST00000066774.6	1374	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCATGACTGTTATTTGA	NA	False	NA	5	True	AATAAA	-22	NA	93223748	93222374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_93222400_93223700
transcript_91677.known	chr4	-	2107	6	FSM	ENSMUSG00000028578.9	ENSMUST00000030313.9	2107	6	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_2	22.29798197147	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGATATCTTTTGCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	94445033	94388317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_94389654_94409298_94409373_94437355_94437432_94438658_94438744_94439501_94439703_94444698
transcript_91680.nnic	chr4	-	1964	4	NIC	ENSMUSG00000028578.9	novel	2107	6	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_2	128.416855937563	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGATATCTTTTGCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	94445051	94388317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_94389654_94409298_94409373_94439501_94439703_94444698
transcript_91681.known	chr4	-	2075	2	FSM	ENSMUSG00000028578.9	ENSMUST00000153294.2	2075	2	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAATAAAAATACAATAAA	NA	False	NA	NA	False	NA	NA	NA	94445003	94437932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_94439703_94444698
transcript_91684.known	chr4	-	2784	14	FSM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	0	0	0	0	multi-exon	TRUE	canonical	3	626	junction_12	53.7532164993284	534	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTGAGGTTTTCCTGTG	NA	False	NA	-12	True	AATAAA	-15	NA	94491481	94457403	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478312_94491113
transcript_91705.known	chr4	+	2139	20	FSM	ENSMUSG00000028576.13	ENSMUST00000030311.11	2139	20	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_8	18.5526129152575	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCCTTTTCCTGTGTT	NA	False	NA	10	True	AATAAA	-11	NA	94502727	94581466	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
transcript_91706.nic	chr4	+	1650	17	ISM	ENSMUSG00000028576.13	ENSMUST00000030311.11	2139	20	16	7451	16	-1192	5prime_fragment	FALSE	canonical	3	154	junction_8	18.8447605450428	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAGGTAAATGTTTAAC	NA	False	NA	NA	False	AAGAAA	-2	NA	94502743	94574015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858
transcript_91709.nic	chr4	+	1178	13	ISM	ENSMUSG00000028576.13	ENSMUST00000107104.3	1713	14	16	2068	16	-2068	5prime_fragment	FALSE	canonical	3	154	junction_8	18.1903515328563	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGACAACTTGACATGGAT	NA	False	NA	NA	False	AATAAA	-18	NA	94502743	94550867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823
transcript_9171.known	chr10	-	2290	8	FSM	ENSMUSG00000019863.8	ENSMUST00000154405.2	2290	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_5	8.8456146173787	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTATAAAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	43777741	43756909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
transcript_91710.nic	chr4	+	1193	12	ISM	ENSMUSG00000028576.13	ENSMUST00000107104.3	1713	14	-41	3708	-41	-3708	5prime_fragment	FALSE	canonical	3	154	junction_8	18.8942249255478	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACCTTTGAACCGGGAC	NA	False	NA	NA	False	NA	NA	NA	94502686	94549227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184
transcript_91715.nic	chr4	+	805	8	ISM	ENSMUSG00000028576.13	ENSMUST00000107104.3	1713	14	-41	28862	-41	-28862	5prime_fragment	FALSE	canonical	3	184	junction_4	8.69200899724358	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGTACATATGCATAAATG	NA	False	NA	NA	False	NA	NA	NA	94502686	94524073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010
transcript_91718.known	chr4	+	4654	23	FSM	ENSMUSG00000006386.16	ENSMUST00000102798.8	4654	23	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_15	3.20027116619671	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCCCAGGATTGTGTCT	281	False	NA	NA	False	AATAAA	-18	NA	94627536	94763176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_94627930_94669052_94669365_94686847_94686959_94687363_94687517_94692521_94692654_94693049_94693191_94699524_94699654_94708320_94708473_94715492_94715638_94715906_94716063_94718120_94718256_94725353_94725642_94737857_94738158_94739959_94740115_94741605_94741817_94743558_94743670_94747124_94747316_94747807_94747922_94751849_94751921_94752841_94752883_94753659_94753757_94761278_94761379_94762160
transcript_91719.known	chr4	-	7420	20	FSM	ENSMUSG00000062627.10	ENSMUST00000075872.4	7420	20	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_15	17.5783170388094	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATTAGCAATGTTATT	NA	False	NA	0	True	AATAAA	-25	NA	94867337	94830276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_94835361_94836338_94836397_94836565_94836672_94839162_94839296_94840410_94840600_94841099_94841175_94841734_94841786_94842108_94842164_94845286_94845376_94847149_94847228_94848564_94848669_94849939_94850071_94853365_94854109_94856106_94856206_94857216_94857296_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
transcript_91721.known	chr4	-	1995	8	FSM	ENSMUSG00000062627.10	ENSMUST00000149954.8	1995	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	25.2627013922235	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTTTGCTC	NA	False	NA	NA	False	TTTAAA	-16	NA	94867312	94852612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_94854109_94856106_94856206_94857216_94857296_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
transcript_91724.known	chr4	-	730	8	FSM	ENSMUSG00000062627.10	ENSMUST00000134730.8	730	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	26.4737066323766	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAAGGAGAATTATGCC	NA	False	NA	NA	False	AGTAAA	-12	NA	94867279	94853839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_94854109_94856106_94856206_94857216_94857291_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
transcript_91725.known	chr4	-	3189	1	FSM	ENSMUSG00000052684.5	ENSMUST00000107094.2	3189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTCCCTTTGCTAAT	5509	False	NA	NA	False	AATAAA	-33	NA	94940459	94937270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_94937300_94940500
transcript_91728.known	chr4	+	1891	16	FSM	ENSMUSG00000028573.19	ENSMUST00000079223.11	1891	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	4.66476151587624	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGTCACTTATGTCTGT	NA	False	NA	10	True	AATAAA	-23	NA	95445743	95815176	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
transcript_91732.known	chr4	+	5517	22	FSM	ENSMUSG00000028572.14	ENSMUST00000030306.14	5517	22	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_6	15.5427871146882	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGGTTTTAGTGGC	4714	False	NA	32	True	AATAAA	-45	NA	95855476	95913650	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_95855794_95862622_95862709_95877874_95877948_95880385_95880437_95881302_95881436_95884000_95884069_95884995_95885059_95886931_95887016_95889406_95889574_95890680_95890822_95891718_95891921_95892533_95892645_95897538_95897627_95897705_95897767_95901434_95901576_95903044_95903139_95904645_95904681_95905179_95905263_95905824_95905926_95907839_95907942_95909804_95909874_95910403
transcript_91736.known	chr4	+	2336	16	FSM	ENSMUSG00000028572.14	ENSMUST00000125627.8	2336	16	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_6	15.7160922482516	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGTAG	4837	False	NA	NA	False	AAGAAA	-27	NA	95855599	95903717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_95855794_95862622_95862709_95877874_95877948_95880385_95880437_95881302_95881436_95884000_95884069_95884995_95885059_95886931_95887016_95889406_95889574_95890680_95890822_95891718_95891921_95892533_95892645_95897538_95897627_95897705_95897767_95901434_95901576_95903044
transcript_91738.nic	chr4	+	1020	9	ISM	ENSMUSG00000028572.14	ENSMUST00000125627.8	2336	16	-107	14150	16	1792	5prime_fragment	FALSE	canonical	3	114	junction_6	15.2515368078105	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAGGTAGTAATTTCAGT	4730	False	NA	NA	False	AAGAAA	-45	NA	95855492	95889567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_95855794_95862622_95862709_95877874_95877948_95880385_95880437_95881302_95881436_95884000_95884069_95884995_95885059_95886931_95887016_95889406
transcript_91741.known	chr4	-	1648	8	FSM	ENSMUSG00000028571.16	ENSMUST00000097973.3	1648	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.451753951452626	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAACTGTGGTTCCTCCTT	1250	False	NA	NA	False	GATAAA	-23	NA	95965761	95933467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_95933866_95945009_95945198_95947220_95947363_95950135_95950313_95956420_95956585_95956966_95957117_95959781_95959945_95965495
transcript_91742.known	chr4	-	2037	9	FSM	ENSMUSG00000015224.11	ENSMUST00000055693.9	2037	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.31695671910659	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACCTTGCGTGCTTCTT	NA	False	NA	NA	False	CATAAA	-21	NA	96479815	96456665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_96457140_96460171_96460311_96462088_96462277_96465828_96465971_96467623_96467801_96471645_96471807_96472213_96472364_96474065_96474229_96479372
transcript_91743.known	chr4	-	1027	7	FSM	ENSMUSG00000028563.17	ENSMUST00000102793.11	1027	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	212.976328888134	368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271543	98243606	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268929_98271306
transcript_91746.nic	chr4	+	3405	20	ISM	ENSMUSG00000061859.18	ENSMUST00000238306.2	7416	45	-35	221970	-29	0	5prime_fragment	FALSE	canonical	2	11	junction_1	4.26088308379139	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTCTTTTAAATTCCCT	NA	False	NA	NA	False	AATAAA	-20	NA	98283992	98385870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_98284162_98293615_98293672_98293771_98293939_98297391_98297587_98299263_98299404_98301240_98301437_98304867_98304997_98312512_98312732_98314249_98314350_98317171_98317264_98319994_98320137_98325566_98325708_98329290_98329380_98331987_98332045_98344366_98344502_98353270_98353433_98357709_98357842_98379774_98379985_98383261_98383376_98385110
transcript_91747.known	chr4	+	2104	15	FSM	ENSMUSG00000061859.18	ENSMUST00000107030.9	2104	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	5.57554792768187	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTCTGTGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	98284128	98342944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_98284162_98293615_98293672_98293771_98293939_98297391_98297587_98299263_98299404_98301240_98301437_98304867_98304997_98312512_98312732_98314249_98314350_98317171_98317264_98319994_98320137_98325566_98325708_98329290_98329380_98331987_98332045_98342596
transcript_91764.nic	chr4	+	1290	4	NIC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	-7	-1513	combination_of_known_junctions	FALSE	canonical	3	192	junction_2	120.477752671972	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGGGGGAAGAAGAAGAAA	NA	False	NA	NA	False	AATAAA	-18	NA	98614977	98624840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_98615078_98615631_98615708_98621359_98622316_98624682
transcript_91765.nic	chr4	+	1405	4	NIC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	-14	-1419	combination_of_known_junctions	FALSE	canonical	3	192	junction_2	120.477752671972	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGGAGGAAGAGAGTTC	NA	False	NA	NA	False	NA	NA	NA	98614956	98624934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_98615078_98615631_98615708_98621359_98622316_98624682
transcript_91767.nic	chr4	+	3195	4	NIC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	-23	-2	intron_retention	FALSE	canonical	3	192	junction_2	120.477752671972	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGTTTACTTAATGTCC	NA	False	NA	30	True	NA	NA	NA	98614947	98626715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_98615078_98615631_98615708_98621359_98622316_98624682
transcript_9177.known	chr10	+	2981	9	FSM	ENSMUSG00000019864.15	ENSMUST00000054418.12	2981	9	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_8	16.985287751463	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGGTTTTTGGTCACTG	NA	False	NA	8	True	NA	NA	NA	43777802	43823858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43811994_43812088_43822416
transcript_91770.nic	chr4	+	1280	4	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-17	1877	-3	-1513	5prime_fragment	FALSE	canonical	3	363	junction_2	40.8765077873452	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGGGGGAAGAAGAAGAAA	NA	False	NA	NA	False	AATAAA	-18	NA	98614967	98624840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682
transcript_91771.nic	chr4	+	1368	4	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-11	1783	3	-1419	5prime_fragment	FALSE	canonical	3	363	junction_2	40.8765077873452	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGGAGGAAGAGAGTTC	NA	False	NA	NA	False	NA	NA	NA	98614973	98624934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682
transcript_91773.nic	chr4	+	3182	4	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-44	2	-30	-2	intron_retention	FALSE	canonical	3	363	junction_2	40.8765077873452	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGTTTACTTAATGTCC	NA	False	NA	30	True	NA	NA	NA	98614940	98626715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682
transcript_91784.known	chr4	+	705	3	FSM	ENSMUSG00000087166.10	ENSMUST00000152889.9	705	3	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	120.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGCCCTGCGTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	98614970	98621881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_98615078_98615631_98615708_98621359
transcript_91787.nic	chr4	+	668	3	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-242	5081	-228	-161	5prime_fragment	FALSE	canonical	3	363	junction_2	35	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGATATAAAGGAAATGCTGT	NA	False	NA	NA	False	TATAAA	-3	NA	98614742	98621636	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_98615078_98615631_98615708_98621379
transcript_91788.nic	chr4	+	1089	3	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-21	4439	-7	397	5prime_fragment	FALSE	canonical	3	363	junction_2	35	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGGAGGAAGAAGAAACG	NA	False	NA	NA	False	NA	NA	NA	98614963	98622278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_98615078_98615631_98615708_98621379
transcript_91793.known	chr4	+	466	2	FSM	ENSMUSG00000087166.10	ENSMUST00000171708.2	466	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTGAGAAGCAAGAAGGGT	NA	False	NA	NA	False	NA	NA	NA	98615029	98621797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_98615078_98621379
transcript_91797.known	chr4	+	2942	5	FSM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	184.711937892492	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACTTAATGTCCCT	NA	False	NA	32	True	NA	NA	NA	98614984	98626717	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682_98624985_98625182
transcript_91798.known	chr4	-	4795	10	FSM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	7.99228022593531	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTACGATTTCTTTG	NA	False	NA	-11	True	ATTAAA	-15	NA	98705774	98643134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_98644823_98649639_98649841_98653699_98653843_98659492_98659713_98661619_98661708_98662910_98663130_98665235_98665348_98666500_98668430_98673895_98673979_98705662
transcript_91801.nic	chr4	-	2382	4	ISM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	-214	22169	-214	-20758	5prime_fragment	FALSE	canonical	1	2	junction_1	6.59966329107444	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTATGGCTTCCGTGCAGG	NA	False	NA	NA	False	AAAAAG	-4	NA	98705988	98665303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_98665348_98666500_98668430_98673895_98673979_98705662
transcript_91803.known	chr4	+	3527	9	FSM	ENSMUSG00000028560.12	ENSMUST00000091358.11	3527	9	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	145.930152384625	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTTTTTTTTTTAA	NA	False	NA	18	True	AATAAA	-24	NA	98812115	98823780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_98812481_98814672_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
transcript_91804.known	chr4	+	3577	9	FSM	ENSMUSG00000028560.12	ENSMUST00000030289.9	3577	9	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	150.352710318105	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTTTTTTTTTTAA	NA	False	NA	18	True	AATAAA	-24	NA	98812046	98823780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_98812481_98814691_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
transcript_91806.nic	chr4	+	3544	8	NIC	ENSMUSG00000028560.12	novel	3577	9	NA	NA	-187	0	combination_of_known_junctions	FALSE	canonical	3	214	junction_1	120.154492387161	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTTTTTTTTTTAA	NA	False	NA	18	True	AATAAA	-24	NA	98811859	98823780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_98812481_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
transcript_91815.nic	chr4	+	1316	6	ISM	ENSMUSG00000028560.12	ENSMUST00000091358.11	3527	9	-208	4567	-139	95	5prime_fragment	FALSE	canonical	3	170	junction_1	165.632122488363	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTGAATTATCCGGCA	NA	False	NA	NA	False	AATAAA	-4	NA	98811907	98819213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_98812481_98814672_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096
transcript_91818.nic	chr4	+	1799	6	ISM	ENSMUSG00000028560.12	ENSMUST00000091358.11	3527	9	-363	4239	-294	423	5prime_fragment	FALSE	canonical	3	170	junction_1	165.632122488363	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAAGTTAAAATAAATTG	NA	False	NA	NA	False	AAGAAA	-1	NA	98811752	98819541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_98812481_98814672_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096
transcript_91819.nic	chr4	+	1297	6	ISM	ENSMUSG00000028560.12	ENSMUST00000030289.9	3577	9	-139	4567	-139	95	5prime_fragment	FALSE	canonical	3	153	junction_1	170.862049618984	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTGAATTATCCGGCA	NA	False	NA	NA	False	AATAAA	-4	NA	98811907	98819213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_98812481_98814691_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096
transcript_91823.nic	chr4	+	1232	5	NIC	ENSMUSG00000028560.12	novel	3577	9	NA	NA	-294	95	combination_of_known_junctions	FALSE	canonical	3	214	junction_1	148.103637700092	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTGAATTATCCGGCA	NA	False	NA	NA	False	AATAAA	-4	NA	98811752	98819213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_98812481_98816470_98816592_98817100_98817206_98817930_98818092_98819096
transcript_91826.nic	chr4	+	1159	5	NIC	ENSMUSG00000028560.12	novel	3577	9	NA	NA	38	423	combination_of_known_junctions	FALSE	canonical	3	214	junction_1	148.103637700092	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAAGTTAAAATAAATTG	NA	False	NA	NA	False	AAGAAA	-1	NA	98812153	98819541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_98812481_98816470_98816592_98817100_98817206_98817930_98818092_98819096
transcript_91831.known	chr4	-	6704	49	FSM	ENSMUSG00000028556.16	ENSMUST00000075836.12	6704	49	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	28.4259515622999	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAATGAGTGGGATTT	NA	False	NA	-6	True	ATTAAA	-19	NA	99008999	98825093	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_98825538_98829130_98829299_98830826_98830934_98832876_98833021_98833364_98833602_98833721_98833812_98834865_98834992_98842102_98842118_98843552_98843685_98846298_98846443_98847213_98847407_98849573_98849675_98850437_98850597_98854528_98854682_98855459_98855595_98857866_98857964_98859031_98859129_98861363_98861500_98861599_98861783_98864109_98864265_98866100_98866271_98872926_98873067_98875560_98875732_98877239_98877354_98877453_98877595_98879600_98879697_98880605_98880696_98889269_98889440_98891988_98892154_98896168_98896401_98897489_98897577_98903931_98904034_98904863_98905003_98908257_98908329_98911578_98911697_98943558_98943722_98945037_98945132_98949415_98949559_98952186_98952353_98953614_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
transcript_91834.nic	chr4	-	1361	10	ISM	ENSMUSG00000028556.16	ENSMUST00000205650.2	6297	48	-163	128038	-10	-1543	5prime_fragment	FALSE	canonical	3	117	junction_1	10.3171916936948	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAATGCTAATTCATTTA	NA	False	NA	NA	False	AATAAA	-23	NA	99009162	98953532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
transcript_91835.known	chr4	-	7127	49	FSM	ENSMUSG00000028556.16	ENSMUST00000030286.14	7127	49	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_27	28.048685042955	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGAATCTAATGCCAGT	NA	False	NA	NA	False	AATAAA	-22	NA	99009152	98824907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_98825538_98829130_98829299_98830826_98830934_98832876_98833021_98833364_98833602_98833721_98833812_98834865_98835001_98843552_98843685_98846298_98846443_98847213_98847407_98849573_98849675_98850437_98850597_98854528_98854682_98855459_98855595_98857866_98857964_98859031_98859129_98861363_98861500_98861599_98861783_98864109_98864265_98866100_98866271_98872926_98873067_98875560_98875732_98877239_98877354_98877453_98877595_98879600_98879697_98880605_98880696_98881883_98881974_98889269_98889440_98891988_98892154_98896168_98896401_98897489_98897577_98903931_98904034_98904863_98905003_98908257_98908329_98911578_98911697_98943558_98943722_98945037_98945132_98949415_98949559_98952186_98952353_98953614_98953696_98958414_98958565_98960641_98960709_98967102_98967189_98967656_98967870_98967956_98968087_98970930_98971000_98971243_98971420_98977752_98977859_99008961
transcript_91837.known	chr4	+	2792	11	FSM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	10.6155546251715	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACACTTTTGTTTTGG	NA	False	NA	9	True	NA	NA	NA	99082383	99148020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
transcript_91838.known	chr4	+	3178	11	FSM	ENSMUSG00000028550.16	ENSMUST00000030279.15	3178	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	14.1265707091282	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	False	NA	13	True	NA	NA	NA	99082170	99148024	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_99082690_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
transcript_91840.known	chr4	+	354	2	FSM	ENSMUSG00000087332.2	ENSMUST00000132108.2	354	2	0	0	0	0	multi-exon	TRUE	canonical	3	84	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACTACAATGAAATTCAAG	NA	False	NA	NA	False	NA	NA	NA	99457736	99461248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_99457876_99461033
transcript_91844.known	chr4	+	2324	1	FSM	ENSMUSG00000067261.5	ENSMUST00000087285.5	2324	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCCATCGTGTTGTACA	NA	False	NA	-45	True	TATAAA	-43	NA	99544535	99546859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_99544500_99546900
transcript_91846.known	chr4	+	3079	15	FSM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	55.2805922322746	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603901	99651697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
transcript_91852.nic	chr4	+	2640	10	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	60.5042596194579	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603827	99651697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
transcript_91855.known	chr4	-	2806	9	FSM	ENSMUSG00000028549.18	ENSMUST00000146258.2	2806	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	47.6377935572167	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTAGGGTGCAAGGCAA	NA	False	NA	NA	False	AATATA	-39	NA	99717423	99653638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319
transcript_91857.nic	chr4	-	620	7	NIC	ENSMUSG00000028549.18	novel	2806	9	NA	NA	0	-54	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	78.2206636524021	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATATGCCTGTATG	NA	False	NA	4	True	AATAAA	-35	NA	99717423	99655621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99702294_99702338_99717319
transcript_91860.known	chr4	+	2121	14	FSM	ENSMUSG00000073791.14	ENSMUST00000136874.4	2121	14	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	5.10481846862679	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTGTCTTGTTAATTG	2075	False	NA	NA	False	AATACA	-19	NA	99717736	99769985	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_99717792_99719629_99719818_99731496_99731709_99732648_99732736_99735289_99735486_99735908_99736028_99746056_99746199_99754598_99754709_99757733_99757892_99758840_99758975_99761882_99762032_99766776_99766987_99768120_99768229_99769732
transcript_91863.known	chr4	+	2371	11	FSM	ENSMUSG00000025791.19	ENSMUST00000058351.16	2371	11	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	14.102836594104	344	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTCGCTTTTATTC	NA	False	NA	16	True	ATTAAA	-19	NA	99786610	99844491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_99787009_99818652_99818816_99819240_99819388_99820714_99820841_99821871_99822063_99824255_99824411_99827183_99827300_99836061_99836198_99839080_99839265_99841165_99841301_99843871
transcript_91867.known	chr4	+	5765	27	FSM	ENSMUSG00000028532.15	ENSMUST00000030257.15	5765	27	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	18.5926832335326	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGCTGCTGGTATCTGA	NA	False	NA	18	True	AATAAA	-20	NA	100633871	100861741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_100634566_100722178_100722242_100754853_100755003_100775238_100775346_100806269_100806397_100809202_100809348_100810230_100810448_100816646_100816797_100821622_100821857_100823381_100823532_100824142_100824267_100825253_100825372_100828077_100828247_100831202_100831346_100831975_100832158_100833542_100833654_100838167_100838291_100840501_100840602_100840690_100840808_100845278_100845440_100845747_100845835_100846575_100846693_100848020_100848173_100849925_100850088_100851231_100851310_100851931_100852034_100860058
transcript_91882.known	chr4	-	4906	25	FSM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_18	17.726657186283	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATATGCCTTTTAATA	NA	False	NA	-7	True	AATAAA	-17	NA	101122479	101009563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_101010788_101011734_101011846_101012212_101012331_101013589_101013763_101014148_101014274_101014950_101015144_101016010_101016106_101016211_101016363_101017228_101017381_101019003_101019140_101020045_101020174_101020854_101020943_101021654_101021799_101023739_101023847_101028431_101028619_101031282_101031407_101032270_101032429_101034764_101034954_101036651_101036992_101038976_101039141_101041533_101041688_101046275_101046400_101048671_101048871_101050979_101051061_101122238
transcript_91897.known	chr4	+	4045	12	FSM	ENSMUSG00000035275.15	ENSMUST00000038463.15	4045	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	7.48773101162691	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTAGTATGTTTATTGT	NA	False	NA	8	True	ATTAAA	-18	NA	100926179	101009567	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_100926527_100953449_100953517_100959804_100960275_100964399_100964592_100977649_100977777_100988460_100988544_100990783_100990889_100991051_100991164_100993193_100993451_100994907_100995017_100996291_100996429_101007528
transcript_91898.known	chr4	+	2893	8	FSM	ENSMUSG00000035275.15	ENSMUST00000106955.2	2893	8	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	8.41524370001322	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAAAATTTTTAATCATT	NA	False	NA	NA	False	AATAAA	-19	NA	100926179	100992553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_100926527_100953449_100953517_100959804_100960275_100964399_100964592_100977649_100977777_100988460_100988544_100990783_100990889_100991051
transcript_919.nic	chr1	-	840	6	ISM	ENSMUSG00000037470.15	ENSMUST00000174716.8	3064	19	-208	37571	-10	-20201	5prime_fragment	FALSE	canonical	3	419	junction_4	18.7552659272003	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAACGAAGGCAAAATTAAT	NA	False	NA	NA	False	NA	NA	NA	36283396	36255256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
transcript_91901.known	chr4	+	4186	6	FSM	ENSMUSG00000028527.19	ENSMUST00000102780.8	4186	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	98.0848612172133	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276473	101324192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_101276568_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
transcript_91902.known	chr4	+	4175	6	FSM	ENSMUSG00000028527.19	ENSMUST00000106945.8	4175	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	107.967402487973	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276515	101324192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_101276599_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
transcript_91903.known	chr4	+	4360	6	FSM	ENSMUSG00000028527.19	ENSMUST00000106946.8	4360	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	102.253410701062	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276485	101324192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_101276754_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
transcript_91904.known	chr4	+	791	5	FSM	ENSMUSG00000028527.19	ENSMUST00000151561.2	791	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	115.655739157207	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACCAAGAAGACGTGGTC	NA	False	NA	NA	False	NA	NA	NA	101277693	101320877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_101277945_101304356_101304477_101317696_101317870_101320145_101320265_101320749
transcript_9191.nnic	chr10	+	2377	9	NNC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	122.27198166383	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTATGTGGTGGCTCA	NA	False	NA	NA	False	AATAAA	-18	NA	44144382	44240287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_44144581_44150636_44150691_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
transcript_91911.known	chr4	+	5127	20	FSM	ENSMUSG00000028528.18	ENSMUST00000106930.8	5127	20	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	19.3392228428705	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTAGAAATATACATTAT	NA	False	NA	7	True	ATTAAA	-15	NA	101353844	101499996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_101353961_101389194_101389260_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
transcript_91913.nic	chr4	+	5233	19	NIC	ENSMUSG00000028528.18	novel	5127	20	NA	NA	-155	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_1	23.5903830583462	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTTAGAAATATACATTA	NA	False	NA	6	True	ATTAAA	-14	NA	101353672	101499995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_101353961_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
transcript_91914.known	chr4	+	5128	19	FSM	ENSMUSG00000028528.18	ENSMUST00000106929.10	5128	19	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	26.7460046629791	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTTAGAAATATACATTA	9325	False	NA	6	True	ATTAAA	-14	NA	101365196	101499995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_101365380_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
transcript_91918.known	chr4	+	1898	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8215	False	NA	8	True	AATAAA	-20	NA	101504914	101516561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
transcript_91920.known	chr4	+	1754	4	FSM	ENSMUSG00000035212.15	ENSMUST00000106927.2	1754	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	275.740215903786	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8290	False	NA	8	True	AATAAA	-20	NA	101504989	101516561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_101505023_101509595_101509672_101513374_101513493_101515034
transcript_91923.known	chr4	+	5542	19	FSM	ENSMUSG00000057722.18	ENSMUST00000106921.9	5542	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.86007433808702	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTTTGTGCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	101574600	101670864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_101575136_101585206_101585267_101590463_101590794_101592756_101592881_101602707_101602914_101607483_101607627_101609257_101609403_101622057_101622349_101622500_101622619_101625243_101625444_101628493_101628643_101630032_101630193_101631397_101631481_101637101_101637319_101639741_101639925_101646459_101646556_101647997_101648104_101649191_101649268_101668544
transcript_91929.nnic	chr4	-	1027	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9919	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	190.887983441133	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101760905	101747216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760802
transcript_9193.known	chr10	+	2352	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTATGTGGTGGCTCA	NA	False	NA	NA	False	AATAAA	-18	NA	44144353	44240287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
transcript_91930.known	chr4	-	913	3	FSM	ENSMUSG00000046133.4	ENSMUST00000051043.4	913	3	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	115.5	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101750986	101747216	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_101747741_101747885_101748198_101750909
transcript_91936.nnic	chr4	-	2010	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9719	1203	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGACTGTTTGTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	101828527	101823446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_101824980_101825125_101825438_101828362
transcript_91939.known	chr4	+	4830	15	FSM	ENSMUSG00000028522.17	ENSMUST00000106858.8	4830	15	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	48.3934238237775	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGTCTAGTTAT	2517	False	NA	17	True	ATTAAA	-18	NA	102971591	103022951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_102971717_102972756_102972858_102975438_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
transcript_91943.nnic	chr4	+	4803	14	NIC	ENSMUSG00000028522.17	novel	4830	15	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	42.5459028127721	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTGTGGTGTCTAGTT	2468	False	NA	15	True	ATTAAA	-16	NA	102971542	103022949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_102971717_102972756_102972858_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
transcript_91946.known	chr4	+	4752	13	FSM	ENSMUSG00000028522.17	ENSMUST00000106857.8	4752	13	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	18.0662361572323	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTGTGGTGTCTAGTT	343	False	NA	15	True	ATTAAA	-16	NA	102976482	103022949	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
transcript_91950.nic	chr4	+	1157	11	ISM	ENSMUSG00000028522.17	ENSMUST00000106857.8	4752	13	102	10161	-2	-7163	5prime_fragment	FALSE	canonical	3	89	junction_1	19.3442497916047	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATCTTCATCCTGGTGT	445	False	NA	NA	False	AAAAAG	-4	NA	102976584	103012788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683
transcript_91959.known	chr4	+	1918	7	FSM	ENSMUSG00000028522.17	ENSMUST00000124348.2	1918	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	20.8619803044251	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAGA	467	False	NA	NA	False	NA	NA	NA	102976606	103001620	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330
transcript_91965.nic	chr4	+	452	4	ISM	ENSMUSG00000028522.17	ENSMUST00000151588.8	2320	6	-2	3057	-2	-3057	5prime_fragment	FALSE	canonical	3	89	junction_1	23.1564725772779	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTAGTGCATGTTCAG	445	False	NA	NA	False	AATAAA	-1	NA	102976584	102996713	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554
transcript_91967.nnic	chr4	+	2031	10	NNC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	38.2935381197454	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	21	False	NA	16	True	AATAAA	-28	NA	103170987	103223640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_103171081_103173440_103173536_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
transcript_91968.known	chr4	+	1915	9	FSM	ENSMUSG00000035069.4	ENSMUST00000035780.4	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	14.2560294261761	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	42	False	NA	16	True	AATAAA	-28	NA	103171008	103223640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
transcript_91970.nnic	chr4	+	2011	9	NNC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	31.8313426515439	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	61	False	NA	16	True	AATAAA	-28	NA	103171027	103223640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_103171196_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
transcript_91972.nnic	chr4	+	1812	8	NIC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	-26	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	32.5739347406756	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	16	False	NA	16	True	AATAAA	-28	NA	103170982	103223640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103188501_103188577_103210698_103210849_103223169
transcript_91976.nnic	chr4	+	1790	2	Genic_Genomic	ENSMUSG00000059195.11	novel	1128	1	NA	NA	-78	728	multi-exon	FALSE	canonical	0	0	junction_1	0	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTCAAGAGATATGAAT	NA	False	NA	NA	False	NA	NA	NA	103420520	103422454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_+_103421939_103422082
transcript_91989.nic	chr4	+	1104	8	NIC	ENSMUSG00000028519.17	novel	5278	15	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_7	7.28991475552747	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACTGTTGTAACTTT	NA	False	NA	8	True	AATAAA	-15	NA	104224734	104537579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266_104537306_104537387
transcript_9199.nnic	chr10	+	2280	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_5	103.891636921468	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTATGTGGTGGCTCA	NA	False	NA	NA	False	AATAAA	-18	NA	44144330	44240287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44222952_44223071_44238911
transcript_91991.nic	chr4	+	1186	7	ISM	ENSMUSG00000028519.17	ENSMUST00000106830.9	5278	15	-52	64462	-52	0	5prime_fragment	FALSE	canonical	3	42	junction_1	2.40947204913349	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACTGTTGTAACTTT	NA	False	NA	8	True	AATAAA	-15	NA	104224734	104537579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266
transcript_91992.known	chr4	+	974	6	FSM	ENSMUSG00000028519.17	ENSMUST00000143644.8	974	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	17.6340579561257	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATGAGCTGAAGCAAAGAG	NA	False	NA	NA	False	NA	NA	NA	104224309	104536693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_104224667_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649
transcript_91996.known	chr4	-	7969	9	FSM	ENSMUSG00000028518.9	ENSMUST00000030243.8	7969	9	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_5	8.06903804675625	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTCTGAAGCTGCCTT	NA	False	NA	0	True	AATAAA	-15	NA	104967087	104887070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_104893528_104893895_104894023_104896918_104897424_104904287_104904513_104906530_104906619_104908398_104908544_104909112_104909207_104932610_104932753_104966901
transcript_92.nnic	SIRV3	+	1117	8	NNC	SIRV3A	novel	1083	8	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1147.84278593564	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTTAACGTCTCGTAAG	NA	False	NA	NA	False	NA	NA	NA	1936	8937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7363_7861_7989_8124_8208_8755
transcript_920.known	chr1	+	4640	7	FSM	ENSMUSG00000037447.17	ENSMUST00000115032.8	4640	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.46572158042361	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGTTTGCTTTATGG	NA	False	NA	NA	False	AATAAA	-31	NA	36346834	36362072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36346918_36355289_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
transcript_92000.nnic	chr4	-	2942	8	NIC	ENSMUSG00000028518.9	novel	7969	9	NA	NA	-13	-4898	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	26.3733012800477	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACATTGCCTTGACAGGT	NA	False	NA	NA	False	NA	NA	NA	104967100	104891968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_104893528_104893895_104894023_104896918_104897424_104904287_104904513_104906530_104906619_104908398_104908544_104909112_104909207_104966901
transcript_92004.known	chr4	+	3159	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACTGGTGCCTGAGCTGT	NA	False	NA	13	True	AATAAA	-23	NA	105014543	105089961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
transcript_92018.known	chr4	+	10575	68	FSM	ENSMUSG00000028514.16	ENSMUST00000094933.5	10575	68	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_13	48.8076771804264	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAATTGGAGTCTCACA	NA	False	NA	12	True	AATAAA	-12	NA	106173430	106298519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106173984_106198410_106198577_106199538_106199607_106203731_106203876_106204475_106204599_106209129_106209166_106209878_106209945_106212870_106212937_106215596_106215672_106216212_106216372_106217319_106217435_106217614_106217719_106219099_106219208_106219353_106219450_106219534_106219697_106219884_106219933_106225223_106225332_106225919_106226070_106227265_106227398_106228180_106228293_106229884_106229962_106230855_106230997_106231187_106231242_106232843_106232960_106234525_106234593_106234705_106234817_106236235_106236335_106236425_106236600_106237265_106237352_106237624_106237719_106239431_106239588_106242619_106242718_106244675_106244772_106244886_106245116_106245697_106245858_106247389_106247546_106249554_106249626_106254365_106254527_106256246_106256309_106258167_106258360_106259236_106259355_106261120_106261266_106263587_106263708_106264209_106264336_106265133_106265233_106266008_106266092_106266480_106266623_106266807_106266928_106267328_106267550_106267980_106268106_106268496_106268639_106269288_106269440_106270775_106270872_106271571_106271676_106273164_106273279_106275388_106275486_106277630_106277748_106278155_106278249_106280656_106280760_106282501_106282624_106283682_106283797_106285684_106285751_106287721_106287789_106288810_106288890_106292175_106292252_106293529_106293617_106293941_106294053_106295973
transcript_92022.known	chr4	+	3179	10	FSM	ENSMUSG00000028514.16	ENSMUST00000106798.7	3179	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	119.167586114039	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAACAAAATAAAAAAAAAA	NA	False	NA	NA	False	TTTAAA	-6	NA	106173416	106218080	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106173984_106198410_106198577_106199538_106199607_106203731_106203876_106204475_106204599_106209129_106209166_106209878_106209945_106212870_106212937_106215596_106215672_106216212
transcript_92025.known	chr4	-	3521	12	FSM	ENSMUSG00000044254.7	ENSMUST00000049507.6	3521	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	3.44016144153173	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTGCCTGCTTACCAGG	NA	False	NA	NA	False	AATAAA	-33	NA	106321526	106299525	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_106300756_106301873_106302056_106303792_106303971_106304326_106304476_106304703_106304878_106306056_106306241_106307236_106307434_106311421_106311564_106311709_106311844_106314061_106314186_106316033_106316226_106320891
transcript_92026.known	chr4	-	2756	4	FSM	ENSMUSG00000025418.8	ENSMUST00000054472.4	2756	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	0.942809041582063	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCACCTTTATTCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	106349480	106340652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_106342643_106343780_106344036_106345175_106345268_106349061
transcript_92028.known	chr4	+	4028	9	FSM	ENSMUSG00000034926.4	ENSMUST00000047973.4	4028	9	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_6	36.7353287041235	822	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTGTCATTTATTCAG	NA	False	NA	18	True	AATAAA	-18	NA	106418234	106446310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106418595_106421597_106421754_106428608_106428715_106429421_106429541_106430924_106431189_106435386_106435531_106442986_106443185_106443541_106443721_106443808
transcript_92035.nic	chr4	-	2085	8	ISM	ENSMUSG00000054362.10	ENSMUST00000106788.2	1569	10	1417	-400	1417	-1	3prime_fragment	FALSE	canonical	1	5	junction_3	4.52656557650139	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGGTTCTACCAGTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	106473018	106448106	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_106448885_106464485_106464620_106467596_106467723_106468609_106468772_106470305_106470450_106470564_106470700_106472231_106472355_106472535
transcript_92037.known	chr4	+	2191	2	FSM	ENSMUSG00000043572.8	ENSMUST00000058905.8	2191	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGTGTGTGTGTGTG	NA	False	NA	5	True	AATAAA	-20	NA	106508302	106512479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106508329_106510314
transcript_92038.known	chr4	+	502	2	FSM	ENSMUSG00000043572.8	ENSMUST00000106782.2	502	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCAGGGAGCTGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	106508265	106510736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106508346_106510314
transcript_92039.known	chr4	+	644	2	FSM	ENSMUSG00000043572.8	ENSMUST00000146966.2	644	2	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTCTACATAGCCCTTA	NA	False	NA	NA	False	NA	NA	NA	106508299	106510063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106508346_106509465
transcript_92041.known	chr4	-	2121	10	FSM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	0	0	0	0	multi-exon	TRUE	canonical	3	276	junction_4	15.561903466677	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTTTGTGTCCT	NA	False	NA	1	True	ATTAAA	-41	NA	106536141	106519452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_106520429_106522852_106522936_106524692_106524775_106525233_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
transcript_92045.nic	chr4	-	2572	9	NIC	ENSMUSG00000025413.14	novel	2121	10	NA	NA	4	0	intron_retention	FALSE	canonical	3	276	junction_3	16.3893067272536	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGATCTTGTGTTGTTTGTG	NA	False	NA	-3	True	ATTAAA	-37	NA	106536137	106519456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_106520429_106522852_106522936_106524692_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
transcript_92048.known	chr4	-	725	3	FSM	ENSMUSG00000025413.14	ENSMUST00000132572.2	725	3	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_2	18.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGGCAAGCGGATCTAG	NA	False	NA	NA	False	NA	NA	NA	106536086	106533486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_106533957_106535381_106535500_106535949
transcript_92056.known	chr4	-	5689	16	FSM	ENSMUSG00000034853.17	ENSMUST00000102762.10	5689	16	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	3.45382235919697	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCATGTTTCTGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	106657043	106601751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_106605682_106606458_106606586_106607079_106607212_106610023_106610155_106610910_106610995_106611270_106611338_106612502_106612559_106613041_106613187_106615502_106615623_106617277_106617432_106619160_106619297_106619641_106619741_106620590_106620652_106627900_106627971_106628539_106628754_106656880
transcript_92058.known	chr4	-	2939	16	FSM	ENSMUSG00000034853.17	ENSMUST00000065253.13	2939	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	6.50606554600312	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGTGTGTGGCTTATTG	NA	False	NA	NA	False	NA	NA	NA	106662195	106604431	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_106605682_106606458_106606586_106607079_106607212_106610023_106610155_106610910_106610995_106611270_106611338_106612502_106612559_106613041_106613187_106615502_106615623_106617277_106617432_106619160_106619297_106619641_106619741_106620590_106620652_106627900_106627971_106628539_106628754_106662102
transcript_92061.nnic	chr4	+	2459	9	NNC	ENSMUSG00000034871.3	novel	1923	8	NA	NA	-47	5085	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	2.82566363886433	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAGTAACTGAGGCGGC	2066	False	NA	NA	False	NA	NA	NA	106591038	106610574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_106591286_106592646_106592794_106599341_106599495_106600393_106600554_106602669_106602895_106603252_106603393_106604169_106604314_106604735_106605463_106610058
transcript_92064.known	chr4	+	1923	8	FSM	ENSMUSG00000034871.3	ENSMUST00000047620.3	1923	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.64189171555813	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACTGTGTAAGACCTGGG	2113	False	NA	4	True	NA	NA	NA	106591085	106605489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106591286_106592646_106592794_106599341_106599495_106600393_106600554_106602669_106602895_106603252_106603393_106604169_106604314_106604735
transcript_92069.known	chr4	+	3195	18	FSM	ENSMUSG00000061887.15	ENSMUST00000030367.15	3195	18	0	0	0	0	multi-exon	TRUE	canonical	3	121	junction_13	39.9235428457496	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCCTGACATACTTGT	NA	False	NA	16	True	ATTAAA	-20	NA	106768666	106906891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106884413_106884495_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
transcript_9207.known	chr10	-	4025	7	FSM	ENSMUSG00000038151.14	ENSMUST00000105490.3	4025	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_6	13.6218778278017	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGCTGGGTGGTTCGGTCC	NA	False	NA	-105	True	NA	NA	NA	44334683	44314288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44334462
transcript_92075.known	chr4	+	1924	17	FSM	ENSMUSG00000061887.15	ENSMUST00000072753.13	1924	17	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_5	51.1955503437555	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAAACCCCACAAGCC	NA	False	NA	NA	False	NA	NA	NA	106768729	106905764	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
transcript_92081.known	chr4	+	1128	5	FSM	ENSMUSG00000061887.15	ENSMUST00000132506.8	1128	5	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	7.51664818918645	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTTTATTGTGACAGCAT	NA	False	NA	NA	False	NA	NA	NA	106769057	106867731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875
transcript_92086.known	chr4	-	1498	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	529	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGTCTGTGAGATATTA	NA	False	NA	-8	True	AATAAA	-23	NA	106924065	106913070	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
transcript_92092.known	chr4	+	2516	7	FSM	ENSMUSG00000028621.18	ENSMUST00000106758.8	2516	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.2687494916219	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGACACTTTGTTTTGT	931	False	NA	16	True	ATTAAA	-16	NA	106924184	106943023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_106924243_106925808_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
transcript_921.nnic	chr1	+	2474	7	NNC	ENSMUSG00000037447.17	novel	563	4	NA	NA	-770	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.92094912738176	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGGGTGTACAGCACT	NA	False	NA	NA	False	AATAAA	-25	NA	36354302	36359609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_+_36354683_36355289_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
transcript_92100.known	chr4	+	1775	8	FSM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	0	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_5	112.332959889567	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGAGTGTTGGGCTTTCT	NA	False	NA	15	True	ATTAAA	-27	NA	107035595	107058193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
transcript_92101.known	chr4	+	1332	8	FSM	ENSMUSG00000028618.12	ENSMUST00000127652.2	1332	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	584.439518701814	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGAGTGTTGGGCTTT	72	False	NA	13	True	ATTAAA	-25	NA	107036214	107058191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107036293_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
transcript_92108.known	chr4	-	6431	5	FSM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	11	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATATCTATTTATTGG	NA	False	NA	NA	False	AATAAA	-17	NA	107035744	106991351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035434
transcript_92109.known	chr4	+	808	4	FSM	ENSMUSG00000028618.12	ENSMUST00000141013.8	808	4	0	0	0	0	multi-exon	FALSE	canonical	3	1542	junction_2	144.642855183226	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTTAGTGGTTATGTGG	NA	False	NA	NA	False	NA	NA	NA	107035863	107048087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731
transcript_92117.known	chr4	-	1755	8	FSM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_4	9.55755924781585	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	-5	True	AATAAA	-20	NA	107110729	107090710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
transcript_9212.known	chr10	+	1853	4	FSM	ENSMUSG00000019848.15	ENSMUST00000019994.14	1853	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGATGACTTTCTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	45165400	45194548	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_45165672_45190656_45191376_45192526_45192636_45193794
transcript_92126.known	chr4	+	581	6	FSM	ENSMUSG00000063172.14	ENSMUST00000152717.8	581	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	155.089135660755	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATTACAACAAAATGCTC	NA	False	NA	-93	True	NA	NA	NA	107110789	107137034	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107110925_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
transcript_92127.known	chr4	+	607	6	FSM	ENSMUSG00000063172.14	ENSMUST00000106749.8	607	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_1	69.6746725862418	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCATTTTTTTTATATAA	NA	False	NA	8	True	ATTAAA	-19	NA	107111099	107137135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107111160_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
transcript_92128.known	chr4	+	608	6	FSM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	99.534114754691	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACTCTGATTCCATTTT	NA	False	NA	-2	True	ATTAAA	-9	NA	107111121	107137125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107111193_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
transcript_92133.nnic	chr4	+	1418	11	NNC	ENSMUSG00000057375.14	novel	1321	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	152.184887554579	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTGTCCTTCAGCTCT	NA	False	NA	28	True	AGTAAA	-18	NA	107171560	107217019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107197523_107197622_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
transcript_92134.known	chr4	+	1321	10	FSM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_9	32.5261528202145	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTGTCCTTCAGCTCT	NA	False	NA	28	True	AGTAAA	-18	NA	107171559	107217019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
transcript_92146.known	chr4	+	4584	18	FSM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_11	46.6085071760132	500	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATCTCTGTGTGTTT	NA	False	NA	22	True	AATAAA	-33	NA	107224980	107273543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
transcript_92166.known	chr4	-	1861	4	FSM	ENSMUSG00000028610.17	ENSMUST00000069271.5	1861	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	4.18993502999218	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTGAAAGCTTTTCTG	NA	False	NA	NA	False	AATAAA	-15	NA	107541427	107533488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_107534267_107536449_107536673_107537842_107538052_107540776
transcript_92167.known	chr4	+	2531	19	FSM	ENSMUSG00000028613.16	ENSMUST00000106732.10	2531	19	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_18	26.8477646953299	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTCCTATGCACTACTC	NA	False	NA	NA	False	NA	NA	NA	107659636	107729540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704640_107704764_107707300_107707340_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107727208_107727386_107729469
transcript_92168.known	chr4	+	4618	18	FSM	ENSMUSG00000028613.16	ENSMUST00000238584.2	4618	18	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_17	23.2122745240813	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTATAGAATTTTCTTC	NA	False	NA	8	True	AATAAA	-17	NA	107659065	107731095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412_107700542_107704640_107704764_107708504_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107727208_107727386_107729469
transcript_92172.nic	chr4	-	3221	4	NIC	ENSMUSG00000073779.8	novel	3078	3	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	1.63299316185545	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTGTCCCTTATTTTAT	4008	False	NA	NA	False	NA	NA	NA	107680221	107663229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_107666035_107667959_107668144_107673123_107673265_107680130
transcript_92173.known	chr4	+	737	4	FSM	ENSMUSG00000028613.16	ENSMUST00000238405.2	737	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_2	7.71722460186015	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCACCTCATGAATAGCC	NA	False	NA	NA	False	NA	NA	NA	107659487	107700678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107659716_107660447_107660568_107691823_107691947_107700412
transcript_92174.known	chr4	-	3078	3	FSM	ENSMUSG00000073779.8	ENSMUST00000188737.7	3078	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTGTCCCTTATTTTAT	4010	False	NA	NA	False	NA	NA	NA	107680219	107663229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_107666035_107667959_107668144_107680130
transcript_92175.known	chr4	+	692	5	FSM	ENSMUSG00000028609.7	ENSMUST00000030348.6	692	5	0	0	0	0	multi-exon	FALSE	canonical	3	977	junction_1	47.9446295219809	520	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAATATGTGAATTCTC	NA	False	NA	50	True	AATAAA	-35	NA	107736951	107744621	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107737143_107738089_107738149_107740264_107740376_107742113_107742197_107744373
transcript_92179.known	chr4	+	741	8	FSM	ENSMUSG00000028608.16	ENSMUST00000119394.8	741	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	260.88131635763	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTATTCTCAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	107747062	107753058	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107752747
transcript_92182.known	chr4	+	2997	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_1	98.5130261769001	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCTAGTGATGAAAAACA	NA	False	NA	NA	False	AATAAA	-11	NA	107747009	107756581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
transcript_92186.known	chr4	+	835	7	FSM	ENSMUSG00000028608.16	ENSMUST00000120473.8	835	7	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_1	106.405931330082	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTTTATCCCAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	107747065	107752543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069
transcript_92193.known	chr4	+	1551	7	FSM	ENSMUSG00000028608.16	ENSMUST00000125107.8	1551	7	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_4	47.0558179187229	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGTGTATTTATGT	NA	False	NA	23	True	NA	NA	NA	107747095	107754999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
transcript_92195.known	chr4	-	2372	5	FSM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_2	11.5866302262565	287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTCCTTTTTCCTTA	NA	False	NA	0	True	AATAAA	-18	NA	107780807	107761177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_107761761_107764117_107765423_107769837_107769945_107771460_107771542_107780511
transcript_92198.known	chr4	+	3005	11	FSM	ENSMUSG00000008932.11	ENSMUST00000238795.2	3005	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	1.32664991614216	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACAGACTATGTGTTT	2396	False	NA	NA	False	AATAAA	-28	NA	107825530	107870729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_107825908_107834800_107834881_107850135_107850352_107859373_107859417_107861466_107861687_107864686_107864787_107865337_107865572_107866875_107867071_107867566_107867702_107868089_107868193_107869427
transcript_92202.known	chr4	-	2640	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_7	132.795314509043	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGGCTTTTACTGTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	107975729	107901035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
transcript_92203.known	chr4	-	3170	13	FSM	ENSMUSG00000028600.16	ENSMUST00000106709.9	3170	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.924211375534118	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGTGTCTGTGTGTGCT	497	False	NA	NA	False	TATAAA	-24	NA	107889287	107871987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_107872893_107874903_107875102_107875990_107876140_107878350_107879009_107879259_107879376_107879677_107879835_107880499_107880610_107881473_107881539_107882712_107882807_107884172_107884493_107885804_107885866_107887134_107887251_107889066
transcript_9221.known	chr10	-	5402	5	FSM	ENSMUSG00000063804.9	ENSMUST00000079390.7	5402	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	19.8368344248774	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATATTTTGTGTGCTGTGA	NA	False	NA	0	True	AATAAA	-33	NA	45346297	45252715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_45257528_45295232_45295305_45296619_45296805_45345132_45345315_45346146
transcript_92215.known	chr4	+	1307	10	FSM	ENSMUSG00000028601.19	ENSMUST00000052999.13	1307	10	0	0	0	0	multi-exon	TRUE	canonical	3	713	junction_3	43.9463758530471	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	24	True	AATAAA	-17	NA	108022633	108036505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_92217.known	chr4	+	1319	10	FSM	ENSMUSG00000028601.19	ENSMUST00000130942.8	1319	10	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_3	222.335582197522	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCACCTTGGCTAGTGA	NA	False	NA	NA	False	NA	NA	NA	108022662	108036268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_9222.known	chr10	+	3785	24	FSM	ENSMUSG00000038822.16	ENSMUST00000037044.13	3785	24	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_19	16.6879511224538	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTCTTAAGTTTGTT	1778	False	NA	82	True	ATTAAA	-13	NA	45453924	45588441	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_45454247_45464475_45464531_45465576_45465667_45466363_45466469_45481604_45481681_45494593_45494726_45514416_45514500_45524686_45524784_45524949_45525052_45525976_45526084_45528683_45528835_45546441_45546777_45547227_45547297_45547534_45547623_45548423_45548536_45548634_45548733_45548869_45548958_45552476_45552627_45553162_45553360_45562697_45562830_45576672_45576772_45577049_45577121_45585976_45586091_45587529
transcript_92224.known	chr4	+	893	9	FSM	ENSMUSG00000028601.19	ENSMUST00000116307.8	893	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	263.258428165178	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGCTCACCTTGGCTAG	NA	False	NA	NA	False	NA	NA	NA	108022714	108036265	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_92248.known	chr4	+	1186	9	FSM	ENSMUSG00000028601.19	ENSMUST00000125647.8	1186	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	262.339951208351	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGTGCTGGAATTGTT	NA	False	NA	22	True	AATAAA	-15	NA	108022684	108036503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108022859_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_92249.known	chr4	-	2283	14	FSM	ENSMUSG00000034645.15	ENSMUST00000223127.2	2283	14	0	0	0	0	multi-exon	FALSE	canonical	1	26	junction_8	15.5010974988431	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGCGGCCTTTCAGGGGT	5669	False	NA	-114	True	NA	NA	NA	108075119	108038934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108039111_108040844_108040943_108041629_108041692_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
transcript_92250.known	chr4	-	2421	14	FSM	ENSMUSG00000034645.15	ENSMUST00000106690.9	2421	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23.6810662641758	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGTGTTTTCTTTTAG	5543	False	NA	NA	False	TTTAAA	-19	NA	108075245	108039130	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108039319_108040844_108040943_108041629_108041692_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
transcript_92252.nnic	chr4	-	2538	13	NIC	ENSMUSG00000034645.15	novel	2283	14	NA	NA	-80	111	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	23.8692910568277	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTGGTTACTTTTCTCT	5463	False	NA	-3	True	NA	NA	NA	108075325	108038823	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_108039111_108040844_108040943_108044436_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
transcript_92254.nic	chr4	-	2246	11	ISM	ENSMUSG00000034645.15	ENSMUST00000106690.9	2421	14	-26	5159	-26	-5159	5prime_fragment	FALSE	canonical	1	26	junction_5	16.8110082981361	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGATTTTGTTTT	5517	False	NA	NA	False	NA	NA	NA	108075271	108044289	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_108044632_108046643_108046689_108046765_108046928_108049106_108049161_108049248_108049349_108051179_108051245_108053340_108053518_108058389_108058531_108061791_108062544_108067252_108067419_108075029
transcript_92259.known	chr4	-	8691	14	FSM	ENSMUSG00000034636.10	ENSMUST00000043616.7	8691	14	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_8	23.507269428335	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGTCTACTTTCACGTC	NA	False	NA	3	True	AATAAA	-21	NA	108158293	108086920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108093392_108094538_108094637_108099017_108099071_108099196_108099395_108101922_108101971_108102072_108102235_108107691_108107743_108107970_108108071_108109348_108109414_108112397_108112575_108117146_108117288_108123014_108123770_108129414_108129581_108158087
transcript_92267.nic	chr4	-	2531	12	ISM	ENSMUSG00000034636.10	ENSMUST00000043616.7	8691	14	-54	11742	-54	0	5prime_fragment	FALSE	canonical	1	32	junction_6	24.3177994872239	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108158347	108098662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_108099071_108099196_108099395_108101922_108101971_108102072_108102235_108107691_108107743_108107970_108108071_108109348_108109414_108112397_108112575_108117146_108117288_108123014_108123770_108129414_108129581_108158087
transcript_92273.known	chr4	+	341	4	FSM	ENSMUSG00000048351.15	ENSMUST00000141423.8	341	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	200.824965247518	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAGGAAAGAAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	108185374	108195375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108185488_108186384_108186416_108189407_108189549_108195319
transcript_92276.known	chr4	+	3714	3	FSM	ENSMUSG00000048351.15	ENSMUST00000131656.2	3714	3	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_2	33.5	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTGTTGGTTGGAATTT	NA	False	NA	NA	False	AATAAA	-25	NA	108185336	108198741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108185488_108189407_108189549_108195319
transcript_92281.known	chr4	-	593	3	FSM	ENSMUSG00000059816.6	ENSMUST00000053157.7	593	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	6	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATCATTACTTCTGGAA	NA	False	NA	-11	True	AATAAA	-6	NA	108240546	108224973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108225239_108234543_108234684_108240358
transcript_92282.known	chr4	-	1289	3	FSM	ENSMUSG00000028597.12	ENSMUST00000030332.7	1289	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	16.5	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAAATGTGTTTGCCATT	NA	False	NA	-11	True	AATAAA	-40	NA	108264158	108257586	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108258195_108260397_108260660_108263739
transcript_92283.known	chr4	+	6054	31	FSM	ENSMUSG00000034610.15	ENSMUST00000043368.12	6054	31	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	32.7154227985653	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAATTTGGTTAATTCAT	NA	False	NA	15	True	AATAAA	-15	NA	108316622	108416612	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108316837_108317213_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406437_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
transcript_92285.known	chr4	-	1516	10	FSM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	0	0	0	0	multi-exon	TRUE	canonical	3	462	junction_7	44.4233283170614	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCTTTTTGTTTCTT	NA	False	NA	-8	True	ATTAAA	-20	NA	108436533	108422066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
transcript_92287.nnic	chr4	-	1170	8	NNC	ENSMUSG00000063800.6	novel	1516	10	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	189.176302610522	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTGGCTTTTTGTTT	NA	False	NA	-11	True	ATTAAA	-17	NA	108436513	108422069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108434240_108434286_108436181
transcript_92296.known	chr4	+	3014	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTATGGTTTGGGGT	5272	False	NA	21	True	NA	NA	NA	108436650	108472030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
transcript_923.known	chr1	+	739	6	FSM	ENSMUSG00000037447.17	ENSMUST00000145179.8	739	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	10	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTCAGCAAGGCAGAG	NA	False	NA	NA	False	AAAAAG	-11	NA	36346834	36358295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36346918_36355292_36355409_36356690_36356744_36357164_36357263_36357568_36357735_36358072
transcript_92336.known	chr4	+	3303	25	FSM	ENSMUSG00000028582.15	ENSMUST00000030320.13	3303	25	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_8	22.4730934798829	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTAGCCATTTTTA	3533	False	NA	13	True	NA	NA	NA	108477136	108491320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
transcript_92337.nic	chr4	+	3287	25	NIC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_7	45.4064973324303	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTAGCCATTTTTA	3492	False	NA	13	True	NA	NA	NA	108477095	108491320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483234_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
transcript_9236.known	chr10	+	782	1	FSM	ENSMUSG00000110841.2	ENSMUST00000217344.2	782	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2729	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGATACACAAAATG	NA	False	NA	NA	False	AATAAA	-34	NA	45751400	45752182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_45751400_45752200
transcript_92370.known	chr4	+	2917	23	FSM	ENSMUSG00000028582.15	ENSMUST00000134844.2	2917	23	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_5	47.2028329448194	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTAGCCATTTTTA	1542	False	NA	13	True	NA	NA	NA	108480759	108491320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483234_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
transcript_92372.known	chr4	-	6459	19	FSM	ENSMUSG00000034557.15	ENSMUST00000106657.8	6459	19	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	6.31771954481311	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTACACTCTTGATTTT	634	False	NA	NA	False	NA	NA	NA	108637995	108494662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108496618_108499284_108499462_108501532_108501639_108507380_108507544_108514123_108514205_108517761_108517913_108531649_108531755_108534906_108534990_108538098_108538324_108539330_108539487_108542105_108542229_108546345_108546467_108548818_108548989_108550516_108550694_108552965_108553066_108574985_108577010_108581003_108581110_108584652_108584743_108637649
transcript_9238.known	chr10	+	7760	42	FSM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_25	18.281297269701	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTCCTGTCTTAGACG	NA	False	NA	NA	False	TATAAA	-21	NA	50468764	50727581	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807_50494368_50514003_50514125_50518618_50518827_50521038_50521181_50521758_50521885_50525204_50525406_50525888_50526030_50526642_50526808_50535013_50535191_50536750_50536823_50566210_50566346_50576035_50576228_50576527_50576753_50583758_50583879_50586975_50587141_50589271_50589359_50590361_50590539_50592580_50592807_50594387_50594543_50596707_50596807_50597868_50598038_50604185_50604407_50606007_50606094_50607708_50607876_50608517_50608664_50608782_50608904_50611305_50611449_50624901_50625040_50625130_50625252_50626548_50626682_50630092_50630219_50643186_50643299_50643468_50643604_50699731_50699957_50716393_50716546_50718238_50718387_50721626_50721837_50725566_50725743_50726556
transcript_92382.nic	chr4	-	2341	4	ISM	ENSMUSG00000034557.15	ENSMUST00000106657.8	6459	19	-109	80657	-109	-78864	5prime_fragment	FALSE	canonical	3	17	junction_1	0.471404520791032	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTTCTTGGGAAAGCAA	525	False	NA	NA	False	AGTAAA	-9	NA	108638104	108575319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_108577010_108581003_108581110_108584652_108584743_108637649
transcript_92383.nic	chr4	-	2022	4	ISM	ENSMUSG00000034557.15	ENSMUST00000106657.8	6459	19	-109	80976	-109	-79183	5prime_fragment	FALSE	canonical	3	17	junction_1	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAGAGAGCAAGTCAGAA	525	False	NA	NA	False	AAAAAG	-4	NA	108638104	108575638	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_108577010_108581003_108581110_108584652_108584743_108637649
transcript_92384.known	chr4	+	1812	4	FSM	ENSMUSG00000094958.2	ENSMUST00000178992.2	1812	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCCTAACACTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	108576845	108639101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108577010_108581003_108581110_108584652_108584743_108637649
transcript_92386.known	chr4	-	1033	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102741.8	1033	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_5	414.71464888523	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGATGCTGTCTGCTCAG	NA	False	NA	NA	False	TATAAA	-13	NA	108690761	108673914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690339
transcript_92387.known	chr4	-	3141	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	0	0	0	0	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTGTGGTTGTTAAA	NA	False	NA	-3	True	ATTAAA	-14	NA	108690811	108671491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
transcript_92388.known	chr4	-	723	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102739.2	723	6	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_5	429.740852142311	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTTTGGAAGCTGGCATG	NA	False	NA	NA	False	ACTAAA	-8	NA	108689128	108674028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108688902
transcript_92399.known	chr4	+	1359	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCCTTTGGTTACTGG	NA	False	NA	28	True	ATTAAA	-22	NA	108691797	108719324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
transcript_9240.nic	chr10	+	3757	21	ISM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	-49	134819	-49	-17797	5prime_fragment	FALSE	canonical	3	83	junction_4	10.5114223585583	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACTGTGGATAAACTCA	NA	False	NA	NA	False	AAGAAA	-5	NA	50468715	50592762	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807_50494368_50514003_50514125_50518618_50518827_50521038_50521181_50521758_50521885_50525204_50525406_50525888_50526030_50526642_50526808_50535013_50535191_50536750_50536823_50566210_50566346_50576035_50576228_50576527_50576753_50583758_50583879_50586975_50587141_50589271_50589359_50590361_50590539_50592580
transcript_92404.known	chr4	+	744	2	FSM	ENSMUSG00000028567.9	ENSMUST00000147581.2	744	2	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATTGGTACAACTATGA	NA	False	NA	NA	False	NA	NA	NA	108691831	108703669	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108692054_108703147
transcript_92406.known	chr4	+	1629	1	FSM	ENSMUSG00000073775.5	ENSMUST00000102738.4	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	229	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCTCTTGATGTA	NA	False	NA	9	True	AATAAA	-15	NA	108704981	108706610	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108705000_108706600
transcript_92407.known	chr4	+	3327	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106650.9	3327	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	5.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTGTATCTGCCTC	NA	False	NA	NA	False	AATAAA	-31	NA	108736259	108800521	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786724_108797822
transcript_92408.known	chr4	+	1078	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106651.9	1078	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	20.6458228220626	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAACCTGCTTGTTTCCT	NA	False	NA	4	True	ATTAAA	-15	NA	108736396	108798382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786751_108797822
transcript_92409.known	chr4	+	1053	4	FSM	ENSMUSG00000003411.11	ENSMUST00000003502.4	1053	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	6.34209919681348	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGCTTGTTTCCTATC	NA	False	NA	7	True	ATTAAA	-18	NA	108747486	108798385	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108747733_108781102_108781222_108786598_108786724_108797822
transcript_92411.known	chr4	-	2871	24	FSM	ENSMUSG00000028559.18	ENSMUST00000030288.14	2871	24	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_18	119.667039647815	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	109059469	108918851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
transcript_92412.known	chr4	-	2903	24	FSM	ENSMUSG00000028559.18	ENSMUST00000194478.6	2903	24	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_19	122.628536784985	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAACCTGGCAGCCTTTT	NA	False	NA	34	True	TTTAAA	-38	NA	109059431	108918811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108965077_108965147_108990940_108991018_109013851_109013931_109029470_109029522_109059301
transcript_92415.known	chr4	-	2408	23	FSM	ENSMUSG00000028559.18	ENSMUST00000162787.9	2408	23	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	111.643220473462	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGTTACAATTTTGACT	NA	False	NA	2	True	ATTAAA	-29	NA	109059469	108919275	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
transcript_92423.known	chr4	-	3134	21	FSM	ENSMUSG00000028559.18	ENSMUST00000084366.13	3134	21	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_18	113.002776514562	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGACTGCAGTTTATTT	NA	False	NA	NA	False	CATAAA	-38	NA	108975219	108918341	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
transcript_92427.known	chr4	-	2604	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	-1	True	CATAAA	-25	NA	108975233	108918846	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
transcript_9243.nic	chr10	+	3380	19	ISM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	-49	138241	-49	-21219	5prime_fragment	FALSE	canonical	3	83	junction_4	9.75897813917972	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTGATCAAATTAAGGT	NA	False	NA	NA	False	AAAACA	-37	NA	50468715	50589340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807_50494368_50514003_50514125_50518618_50518827_50521038_50521181_50521758_50521885_50525204_50525406_50525888_50526030_50526642_50526808_50535013_50535191_50536750_50536823_50566210_50566346_50576035_50576228_50576527_50576753_50583758_50583879_50586975_50587141_50589271
transcript_9244.nic	chr10	+	1264	6	ISM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	9	208883	9	0	5prime_fragment	FALSE	canonical	3	83	junction_4	7.57891812859857	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTTAATGAAACAATATCG	NA	False	NA	NA	False	AAGAAA	-3	NA	50468773	50518698	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807_50494368_50514003_50514125_50518618
transcript_92440.known	chr4	-	2765	23	FSM	ENSMUSG00000028559.18	ENSMUST00000160774.8	2765	23	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_22	125.659943846889	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	109059414	108918851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109059301
transcript_92441.known	chr4	+	3784	33	FSM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	0	0	0	0	multi-exon	FALSE	canonical	1	36	junction_3	173.040085222326	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGACGTGTGTGCAT	NA	False	NA	39	True	AATAAA	-31	NA	108857966	108918358	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108858362_108870706_108871038_108873848_108873983_108874823_108874894_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
transcript_92446.known	chr4	+	4311	31	FSM	ENSMUSG00000053510.13	ENSMUST00000065977.11	4311	31	0	0	0	0	multi-exon	FALSE	canonical	1	202	junction_11	90.2713440442511	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTAACACTTGATTTTC	9940	False	NA	NA	False	AATAAA	-23	NA	108857851	108918974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
transcript_9245.nic	chr10	+	1751	4	ISM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	9	232526	9	23	5prime_fragment	FALSE	canonical	3	92	junction_3	4.71404520791032	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGATCAATTTCCATTT	NA	False	NA	NA	False	AAAAAG	-5	NA	50468773	50495055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807
transcript_92456.known	chr4	+	4179	29	FSM	ENSMUSG00000053510.13	ENSMUST00000102736.9	4179	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	139.898300342697	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTAACACTTGATTTTC	9940	False	NA	NA	False	AATAAA	-23	NA	108857851	108918974	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
transcript_92462.nic	chr4	+	2153	16	ISM	ENSMUSG00000053510.13	ENSMUST00000065977.11	4311	31	-44	17111	-44	0	5prime_fragment	FALSE	canonical	1	202	junction_11	99.3866970753911	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGTGAGTTACTGTGAT	9896	False	NA	NA	False	NA	NA	NA	108857807	108901863	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744
transcript_92467.nic	chr4	+	642	2	ISM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	-159	47564	-44	-19121	5prime_fragment	FALSE	canonical	3	601	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAGGAAGAAGAGGAGGA	9896	False	NA	29	True	NA	NA	NA	108857807	108870794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_108858362_108870706
transcript_92469.nnic	chr4	+	1785	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16193	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.12195031213697	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGGGTTTTTCTTTTGT	NA	False	NA	NA	False	TATAAA	-17	NA	109075488	109111542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
transcript_92470.nnic	chr4	+	2011	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16193	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.12195031213697	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCTTGTCTTATTTCTA	NA	False	NA	4	True	TTTAAA	-21	NA	109075488	109111768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
transcript_92475.known	chr4	+	5190	25	FSM	ENSMUSG00000028552.14	ENSMUST00000102729.10	5190	25	0	0	0	0	multi-exon	TRUE	canonical	3	117	junction_16	21.9326225188771	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTATCTTGTCCTGTT	NA	False	NA	NA	False	AATAAA	-27	NA	109137464	109245014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178415_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
transcript_92478.known	chr4	+	2963	25	FSM	ENSMUSG00000028552.14	ENSMUST00000176251.8	2963	25	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_23	38.7344726955202	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTAGACCCCTGTTCTGG	NA	False	NA	-3	True	ATTAAA	-7	NA	109137499	109242884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178415_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109240043_109240164_109242515
transcript_92479.known	chr4	+	2802	25	FSM	ENSMUSG00000028552.14	ENSMUST00000175776.8	2802	25	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_9	34.7439043414653	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTATCTGTCCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	109137608	109242662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178523_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
transcript_9248.known	chr10	+	3024	11	FSM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	11.5134703716994	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCCTGACTTCTATTTG	NA	False	NA	6	True	AATAAA	-16	NA	52109714	52197472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
transcript_92497.known	chr4	+	2356	18	FSM	ENSMUSG00000028555.16	ENSMUST00000064129.14	2356	18	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_14	2.90923835738311	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTTTTCATATACATTT	NA	False	NA	NA	False	NA	NA	NA	109264283	109301942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_109264407_109273183_109273289_109278489_109278622_109279642_109279720_109280071_109280140_109283497_109283563_109285327_109285428_109286083_109286150_109288052_109288162_109288587_109288656_109288735_109288796_109290185_109290348_109295945_109296038_109297718_109297840_109299423_109299536_109299893_109300009_109300704_109300822_109301278
transcript_92500.known	chr4	-	4061	3	FSM	ENSMUSG00000028557.11	ENSMUST00000030284.10	4061	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_2	15	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTAAACCAGAGTGGCC	NA	False	NA	-6	True	AGTAAA	-16	NA	109333872	109308294	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_109311620_109314094_109314265_109333306
transcript_92503.known	chr4	-	2471	3	FSM	ENSMUSG00000028551.15	ENSMUST00000097921.10	2471	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	1	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATTTTCCTGTGATTTT	6843	False	NA	NA	False	ATTAAA	-22	NA	109524386	109518072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_109518824_109522214_109522355_109522806
transcript_92514.known	chr4	+	4468	19	FSM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	0	0	0	0	multi-exon	FALSE	canonical	3	1050	junction_10	116.73236245551	3259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAGTTGAAAAGCCCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	109533784	109821157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_109534270_109567986_109568056_109577952_109578000_109584586_109584790_109593787_109593880_109600062_109600155_109614776_109614883_109651964_109652052_109687002_109687099_109697512_109697640_109698505_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783081_109783160_109792679_109792896_109818995
transcript_9253.known	chr10	+	2795	10	FSM	ENSMUSG00000019891.16	ENSMUST00000218582.2	2795	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	48.9166587797331	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTGACTTCTATTTGGC	NA	False	NA	8	True	AATAAA	-18	NA	52109732	52197474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_52109932_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
transcript_9255.nic	chr10	+	994	8	ISM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	-41	8475	-41	-8475	5prime_fragment	FALSE	canonical	3	170	junction_2	12.1117247967009	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTGAATTTAAACTTTT	NA	False	NA	NA	False	NA	NA	NA	52109673	52188997	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909
transcript_92554.known	chr4	+	2922	3	FSM	ENSMUSG00000047143.4	ENSMUST00000061187.4	2922	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACGCTCGAATCCCGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	109835249	109840884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_109835534_109837051_109837607_109838801
transcript_92559.known	chr4	-	3761	6	FSM	ENSMUSG00000028546.18	ENSMUST00000106603.9	3761	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6.48074069840786	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTTCCCAAATTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110209106	110060933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_110063857_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
transcript_92560.known	chr4	+	1448	6	FSM	ENSMUSG00000028545.14	ENSMUST00000129760.8	1448	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	5.19230199429887	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATAAGGCCTTTGCATTT	NA	False	NA	1	True	AATAAA	-13	NA	111272284	111317117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_111272598_111288213_111288348_111290283_111290751_111305702_111305852_111311281_111311496_111316946
transcript_92561.known	chr4	+	1826	6	FSM	ENSMUSG00000028545.14	ENSMUST00000030274.7	1826	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	5.19230199429887	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTGTTCTCATTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	111272202	111317495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_111272598_111288213_111288348_111290365_111290751_111305702_111305852_111311281_111311496_111316946
transcript_92564.known	chr4	+	2239	13	FSM	ENSMUSG00000034401.17	ENSMUST00000084354.4	2239	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	28.7691964897643	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCCACACTTTAAAGGGA	NA	False	NA	62	True	NA	NA	NA	111577401	111686381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663180_111679937_111680030_111685382
transcript_92565.known	chr4	+	2466	13	FSM	ENSMUSG00000034401.17	ENSMUST00000038868.14	2466	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	15.2103309190388	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGTATTTTCATAGGT	NA	False	NA	20	True	AATAAA	-35	NA	111577180	111686339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
transcript_92573.nic	chr4	+	2237	11	NIC	ENSMUSG00000034401.17	novel	2466	13	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	35.5550277738606	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTACCTCTGGTATTT	NA	False	NA	12	True	AATAAA	-27	NA	111577214	111686331	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_111577455_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
transcript_92575.known	chr4	+	2415	11	FSM	ENSMUSG00000034401.17	ENSMUST00000122820.8	2415	11	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	11.3934191531779	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAGAAAAAGACAAAGC	NA	False	NA	NA	False	NA	NA	NA	111577206	111664251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127
transcript_92576.known	chr4	-	3170	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTGGTTCTGATATCTG	NA	False	NA	NA	False	AATAAA	-25	NA	114844438	114816532	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
transcript_9258.nic	chr10	+	1219	6	ISM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	-41	16302	-41	-16302	5prime_fragment	TRUE	canonical	3	170	junction_2	13.4669966956259	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCGAGTTTCAACGGCAT	NA	False	NA	NA	False	TTTAAA	-2	NA	52109673	52181170	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682
transcript_92581.known	chr4	+	5285	17	FSM	ENSMUSG00000028718.17	ENSMUST00000030490.13	5285	17	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_15	11.7923107892389	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAACTGACTTCTCTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	114857355	114900393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114866467_114866716_114867260_114867345_114868990_114869078_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
transcript_92585.nic	chr4	+	3187	16	ISM	ENSMUSG00000028718.17	ENSMUST00000030490.13	5285	17	-66	4019	-66	0	5prime_fragment	TRUE	canonical	3	47	junction_15	11.9368709840095	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGAAAAAAAGACACAATT	NA	False	NA	NA	False	NA	NA	NA	114857289	114896374	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114866467_114866716_114867260_114867345_114868990_114869078_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264
transcript_92593.known	chr4	+	887	5	FSM	ENSMUSG00000028716.16	ENSMUST00000106548.9	887	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.87082869338697	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCACGGGCCTATTTCT	NA	False	NA	NA	False	NA	NA	NA	114945919	114951096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_114946004_114946235_114946410_114948338_114948448_114950117_114950214_114950672
transcript_92599.known	chr4	+	2792	11	FSM	ENSMUSG00000034210.15	ENSMUST00000106525.9	2792	11	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	11.0657128102983	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTCAGAATATGTCTTTT	NA	False	NA	141	True	NA	NA	NA	115594940	115631632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768_115621881_115623589_115623710_115631034
transcript_92601.nic	chr4	+	2007	8	ISM	ENSMUSG00000034210.15	ENSMUST00000106522.9	2636	11	-81	6794	-46	4002	5prime_fragment	FALSE	canonical	3	140	junction_6	12.3271725741741	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAGGAACAGGAAGCTTC	NA	False	NA	NA	False	NA	NA	NA	115594894	115619494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414
transcript_92603.nic	chr4	+	2303	2	ISM	ENSMUSG00000034210.15	ENSMUST00000132306.2	2368	4	-82	12381	-46	-12381	5prime_fragment	FALSE	canonical	3	178	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGCTTAGAGAAGTTAAGT	NA	False	NA	NA	False	NA	NA	NA	115594894	115598748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_115596038_115597588
transcript_92606.known	chr4	+	2160	9	FSM	ENSMUSG00000028710.19	ENSMUST00000239030.2	2160	9	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_5	26.518566609076	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCCACACCCCCACACAC	NA	False	NA	NA	False	NA	NA	NA	115642180	115669511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_115642502_115645458_115645568_115647777_115647829_115648419_115648483_115652600_115652652_115653951_115654000_115655162_115655259_115657514_115657623_115668198
transcript_92615.known	chr4	+	2884	4	FSM	ENSMUSG00000028709.4	ENSMUST00000030477.4	2884	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	9.42809041582063	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTGGGAAGTGGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	115685288	115693382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_115685439_115688419_115688887_115690829_115691033_115691318
transcript_9262.known	chr10	-	3875	9	FSM	ENSMUSG00000019861.16	ENSMUST00000217753.2	3875	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	57.8325978579555	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAAATATTTTGGTTTA	NA	False	NA	-35	True	AATAAA	-18	NA	52257814	52213155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_52215950_52222144_52222326_52225167_52225333_52226696_52226793_52229422_52229589_52230667_52230844_52233437_52233462_52234868_52235034_52257706
transcript_92620.nnic	chr4	+	2714	14	NNC	ENSMUSG00000028708.17	novel	2552	14	NA	NA	-22	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_3	57.857302526313	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696372	115736447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_115696479_115705416_115705560_115713764_115713914_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_92628.known	chr4	+	2552	14	FSM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	55.5404857930697	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696429	115736447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_115696479_115702818_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_92629.nnic	chr4	+	2524	14	NNC	ENSMUSG00000028708.17	novel	2552	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	56.7430625533113	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696417	115736447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_115696439_115702818_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_9263.known	chr10	-	4216	8	FSM	ENSMUSG00000019861.16	ENSMUST00000020008.10	4216	8	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_5	13.2125481483107	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGGTTTATTATGGGT	NA	False	NA	-27	True	AATAAA	-26	NA	52258171	52213147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_52215950_52222144_52222326_52225167_52225333_52226696_52226793_52229422_52229589_52230667_52230844_52234868_52235034_52257706
transcript_92631.known	chr4	+	2543	13	FSM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	27.9607860325055	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696394	115736447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_92634.nnic	chr4	+	2497	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	42.5606593255112	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696400	115736447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_115696439_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_92657.known	chr4	+	1377	9	FSM	ENSMUSG00000028708.17	ENSMUST00000153766.8	1377	9	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	26.830195209875	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGCTTATAGCGTGTC	NA	False	NA	NA	False	TTTAAA	-12	NA	115696419	115731067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407
transcript_92660.known	chr4	-	3827	15	FSM	ENSMUSG00000034171.14	ENSMUST00000049095.6	3827	15	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	8.32257809350258	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAAGAGTGAATAAATAAT	NA	False	NA	NA	False	NA	NA	NA	115875123	115853865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_115855813_115856017_115856164_115856695_115856805_115857245_115857286_115857983_115858025_115858300_115858401_115859654_115859753_115860173_115860300_115861551_115861677_115861910_115861952_115862196_115862404_115862497_115862632_115862783_115862919_115865376_115865491_115874659
transcript_92669.known	chr4	-	2439	6	FSM	ENSMUSG00000028706.15	ENSMUST00000030475.3	2439	6	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	15.8417170786503	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCTTTCTTGAGATTTG	NA	False	NA	NA	False	ATTAAA	-38	NA	115911073	115890038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115910880
transcript_92672.known	chr4	-	579	4	FSM	ENSMUSG00000063882.13	ENSMUST00000134760.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	488.184618993903	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_115924370_115927059_115927222_115927864_115927955_115932112
transcript_92673.known	chr4	-	547	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	0	0	0	0	multi-exon	FALSE	canonical	3	1017	junction_2	25.9272486435067	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7657	False	NA	-7	True	AATAAA	-17	NA	115932268	115924161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
transcript_92687.known	chr4	-	2780	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGTGTTAGGCATTC	NA	False	NA	4	True	NA	NA	NA	115980882	115954112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
transcript_92688.nnic	chr4	-	2729	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980912	115954171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980697
transcript_92690.nnic	chr4	-	2988	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_18	118.034272591366	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980916	115954171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980610
transcript_92691.nnic	chr4	-	2931	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980924	115954171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980675
transcript_92697.known	chr4	-	3025	18	FSM	ENSMUSG00000028702.16	ENSMUST00000102704.4	3025	18	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_11	50.1315225199974	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980856	115954171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
transcript_927.known	chr1	-	2907	22	FSM	ENSMUSG00000010453.13	ENSMUST00000188961.7	2907	22	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_8	60.2515512921168	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGCTGAGCCGGCTGA	NA	False	NA	NA	False	NA	NA	NA	36408252	36376653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36386297_36386376_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406830_36407116_36408185
transcript_9272.known	chr10	+	4605	5	FSM	ENSMUSG00000023068.17	ENSMUST00000023830.16	4605	5	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_2	27.0370116691915	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTAGAATTTGAGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	52293642	52316279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_52294265_52305288_52305415_52306162_52306313_52309440_52309541_52312672
transcript_92734.known	chr4	+	3065	10	FSM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_3	24.5573151707401	1037	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCCTTCTTGATGATT	NA	False	NA	9	True	AATAAA	-17	NA	115932465	115954240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_115932805_115936585_115936673_115937745_115937817_115945643_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519
transcript_92755.known	chr4	+	2719	22	FSM	ENSMUSG00000028700.15	ENSMUST00000106498.8	2719	22	0	0	0	0	multi-exon	TRUE	canonical	3	321	junction_9	36.7984644262092	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGGTGTATTTTGTAATA	NA	False	NA	6	True	ATTAAA	-16	NA	116007714	116017041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116007815_116008261_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011038_116011138_116011288_116011417_116011738_116011810_116012027_116012104_116012259_116012344_116012425_116012468_116012656_116012716_116012925_116012999_116013082_116013212_116013292_116013419_116015089_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
transcript_92766.known	chr4	+	2613	21	FSM	ENSMUSG00000028700.15	ENSMUST00000106496.8	2613	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	95.8541991777095	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGGTGTATTTTGTAATA	NA	False	NA	6	True	ATTAAA	-16	NA	116007721	116017041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116007815_116008261_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011288_116011417_116011738_116011810_116012027_116012104_116012259_116012344_116012425_116012468_116012656_116012716_116012925_116012999_116013082_116013212_116013292_116013419_116015089_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
transcript_9277.nnic	chr10	+	3046	5	NNC	ENSMUSG00000023068.17	novel	4605	5	NA	NA	6	-977	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	165.410663199202	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAGTAGTATGTGAATGT	NA	False	NA	9	True	AATAAA	-22	NA	52293648	52315302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_+_52293689_52305288_52305415_52306162_52306313_52309440_52309541_52312672
transcript_9278.known	chr10	-	7425	13	FSM	ENSMUSG00000038594.10	ENSMUST00000220443.2	7425	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	3.73794358200097	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTTTCATGGTGCCTA	NA	False	NA	NA	False	AATAAA	-15	NA	53256043	53149538	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_53154341_53157444_53157677_53159932_53160041_53167859_53167911_53168353_53168472_53172309_53172465_53174148_53174302_53177597_53177778_53188603_53188722_53195693_53195816_53224567_53225356_53234144_53234304_53255604
transcript_92783.known	chr4	+	557	3	FSM	ENSMUSG00000028700.15	ENSMUST00000144311.2	557	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTCATGCATATAACT	NA	False	NA	NA	False	AATGAA	-36	NA	115981036	115996047	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_115981314_115994890_115995026_115995902
transcript_92784.known	chr4	-	5742	2	FSM	ENSMUSG00000028701.5	ENSMUST00000030469.5	5742	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGCTTAAGTGTCTTCC	NA	False	NA	NA	False	NA	NA	NA	116001806	115989602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_115995032_116001493
transcript_92787.known	chr4	-	1985	8	FSM	ENSMUSG00000028699.10	ENSMUST00000030465.10	1985	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.48461497791618	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTGTTGTTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	116024797	116019065	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116020233_116020503_116020588_116020824_116020978_116021058_116021158_116021263_116021339_116021515_116021723_116024204_116024270_116024662
transcript_92788.known	chr4	+	5257	10	FSM	ENSMUSG00000028698.14	ENSMUST00000030464.14	5257	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	3.32591767713239	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTTTTTGGTTTTCTTGG	3291	False	NA	NA	False	AATAAA	-15	NA	116078857	116160253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116079611_116113364_116113474_116116741_116116841_116127984_116128166_116129935_116130062_116143252_116143396_116144019_116144197_116148871_116148947_116149293_116149465_116156830
transcript_92791.known	chr4	-	5723	30	FSM	ENSMUSG00000003810.14	ENSMUST00000106486.8	5723	30	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_24	83.2550770091545	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGGCCTGTGTTTGCTT	8487	False	NA	-3	True	AATACA	-15	NA	116321380	116163959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116165532_116165843_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173746_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116190609_116190631_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
transcript_92795.known	chr4	-	5705	29	FSM	ENSMUSG00000003810.14	ENSMUST00000106485.8	5705	29	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_2	30.4319246978617	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGGCCTGTGTTTGCTT	8487	False	NA	-3	True	AATACA	-15	NA	116321380	116163959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116165535_116165843_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173746_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
transcript_92798.nic	chr4	-	2398	10	ISM	ENSMUSG00000003810.14	ENSMUST00000106485.8	5705	29	-33	14595	-33	1076	5prime_fragment	FALSE	canonical	3	250	junction_7	35.0442401177725	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCTGGGAGGAACTGAAA	8454	False	NA	NA	False	NA	NA	NA	116321413	116178554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169_116210262_116248799_116248832_116287602_116287746_116292640_116292789_116320932
transcript_9280.known	chr10	-	4882	14	FSM	ENSMUSG00000058298.11	ENSMUST00000237608.2	4882	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	11.0630254697519	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTCTTTCTGTGTGCTT	NA	False	NA	-17	True	AATAAA	-41	NA	53506535	53412410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_53414864_53417033_53417180_53417632_53417716_53423498_53423703_53424592_53424796_53439378_53439554_53487447_53487568_53488922_53489049_53491947_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819_53506228_53506490
transcript_92800.nnic	chr4	+	1990	10	NNC	ENSMUSG00000028696.13	novel	2118	9	NA	NA	38	2868	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_9	22.8958996814325	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCACTAGAGTTGGGGACA	NA	False	NA	NA	False	NA	NA	NA	116364786	116398308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996_116395118_116398080
transcript_92804.known	chr4	+	2118	9	FSM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	9.43977621556783	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAGCAACAGTACAA	NA	False	NA	NA	False	AATAAA	-19	NA	116364745	116395432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996
transcript_92814.known	chr4	-	1962	5	FSM	ENSMUSG00000055900.15	ENSMUST00000106478.9	1962	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	29.1150734156725	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTCAT	NA	False	NA	-108	True	NA	NA	NA	116413133	116408829	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116409321_116409518_116409542_116409678_116410927_116411964_116412101_116413069
transcript_92818.nic	chr4	-	2238	4	NIC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-37	102	intron_retention	TRUE	non_canonical	0	0	junction_1	27.6204433144888	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGGATTGTCTAAGCCT	NA	False	NA	-6	True	AATAAA	-27	NA	116413170	116408727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_116409321_116409518_116410927_116411964_116412101_116413069
transcript_92820.nnic	chr4	-	1187	4	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-37	-214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.6204433144888	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTCAAAGTAACTTATT	NA	False	NA	NA	False	NA	NA	NA	116413170	116409315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_116409428_116410088_116410927_116411964_116412101_116413069
transcript_92821.known	chr4	-	974	3	FSM	ENSMUSG00000055900.15	ENSMUST00000069674.6	974	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTTTTTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	116413132	116410151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116410927_116411964_116412101_116413069
transcript_92828.nnic	chr4	+	3193	13	NNC	ENSMUSG00000034042.17	novel	3588	12	NA	NA	18	-180	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	89.5750383756546	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGATTGTCTTGTGTAA	NA	False	NA	9	True	AATAAA	-13	NA	116414872	116450899	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_116415026_116426360_116427077_116427273_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
transcript_92838.known	chr4	+	3588	12	FSM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	28.7128847743677	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTTTTACTGAAGGAA	NA	False	NA	12	True	AATAAA	-18	NA	116414854	116451079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
transcript_92840.known	chr4	+	2642	12	FSM	ENSMUSG00000034042.17	ENSMUST00000106475.2	2642	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	94.7459412768154	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTTGTTGAATACTTCA	NA	False	NA	NA	False	TATAAA	-18	NA	116415275	116450233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116415347_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
transcript_92852.nic	chr4	+	1708	5	ISM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	-40	19310	-40	-6870	5prime_fragment	FALSE	canonical	3	268	junction_2	24.9136007032304	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGATAAAGTAGAAAAGTT	NA	False	NA	NA	False	AAGAAA	-33	NA	116414814	116431769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533
transcript_92857.nic	chr4	-	3146	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	391	-557	-53	0	3prime_fragment	TRUE	canonical	3	774	junction_12	215.450595691155	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCTTGTTCTGGAATT	NA	False	NA	NA	False	AATAAA	-16	NA	116484747	116458248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_92860.nic	chr4	-	2589	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	391	0	-53	0	3prime_fragment	FALSE	canonical	3	774	junction_12	215.450595691155	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116484747	116458805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_92866.known	chr4	-	2118	14	FSM	ENSMUSG00000028693.16	ENSMUST00000030457.12	2118	14	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_9	345.747385294336	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCTTGTTCTGGAATT	NA	False	NA	NA	False	AATAAA	-16	NA	116484694	116458248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_9287.nic	chr10	-	1664	8	NIC	ENSMUSG00000058298.11	novel	2421	8	NA	NA	-85	1	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	12.5795428358579	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCCTTTCTAAAACTGC	NA	False	NA	NA	False	ATTAAA	-21	NA	53506140	53484932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_53485111_53487447_53487568_53488922_53489049_53491947_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819
transcript_92877.nic	chr4	-	1544	6	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	391	8794	-53	1064	internal_fragment	FALSE	canonical	3	774	junction_3	75.380103475652	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACCGGGATATGATAGAG	NA	False	NA	6	True	AATGAA	-41	NA	116484747	116467599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_92878.nic	chr4	-	966	6	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	391	9372	-53	486	internal_fragment	FALSE	canonical	3	774	junction_3	75.380103475652	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAAAAGAAACTTCAGAAG	NA	False	NA	NA	False	NA	NA	NA	116484747	116468177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_92879.nic	chr4	-	877	6	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	391	9461	-53	397	internal_fragment	FALSE	canonical	3	774	junction_3	75.380103475652	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAATCAATTTCAGGAGC	NA	False	NA	NA	False	NA	NA	NA	116484747	116468266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_9288.known	chr10	-	4132	8	FSM	ENSMUSG00000058298.11	ENSMUST00000219838.3	4132	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	13.5586405916625	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATCCTTTCTAAAACTG	NA	False	NA	NA	False	ATTAAA	-20	NA	53506535	53484933	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_53487568_53488922_53489049_53491947_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819_53506228_53506490
transcript_92881.nic	chr4	-	693	6	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	391	9645	-53	213	internal_fragment	FALSE	canonical	3	774	junction_3	75.380103475652	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGGTGGAAGAGAAGACA	NA	False	NA	2	True	GATAAA	-21	NA	116484747	116468450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_92882.nic	chr4	-	634	6	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	391	9704	-53	154	internal_fragment	FALSE	canonical	3	774	junction_3	75.380103475652	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAAGGCAAGTCTCTGAC	NA	False	NA	-57	True	AAAAAG	-12	NA	116484747	116468509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_92886.known	chr4	-	1017	5	FSM	ENSMUSG00000028693.16	ENSMUST00000154811.8	1017	5	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	71.8487995724355	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGGGAATGTATTTCT	NA	False	NA	NA	False	GATAAA	-8	NA	116484690	116468663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_92887.known	chr4	-	3153	2	FSM	ENSMUSG00000028693.16	ENSMUST00000134038.2	3153	2	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAAAAAAAAAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	116481119	116474180	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116476178_116479963
transcript_92890.known	chr4	-	1420	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	0	0	0	0	multi-exon	FALSE	canonical	3	1447	junction_3	104.145331148352	1437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	-1	True	AATAAA	-15	NA	116508877	116493706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
transcript_92895.known	chr4	-	2227	8	FSM	ENSMUSG00000028692.15	ENSMUST00000128010.2	2227	8	0	0	0	0	multi-exon	FALSE	canonical	3	1447	junction_2	89.468042407582	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACGTTGTGTGCCTGACTT	NA	False	NA	-2	True	AATAAA	-14	NA	116508593	116493707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
transcript_92905.known	chr4	+	2294	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	0	0	0	0	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	11339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGTTCATTGGGTATC	NA	False	NA	NA	False	AATAAA	-15	NA	116542740	116558019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
transcript_92913.known	chr4	+	877	6	FSM	ENSMUSG00000028691.13	ENSMUST00000106470.8	877	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9266.17147693696	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCAGGCAGCATTGAGCA	NA	False	NA	NA	False	NA	NA	NA	116543083	116556469	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116543334_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
transcript_92920.known	chr4	+	553	2	FSM	ENSMUSG00000028691.13	ENSMUST00000156145.7	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	23986	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTGTAATTAAAAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	116542795	116545094	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116542858_116544603
transcript_92922.known	chr4	-	2106	4	FSM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	0	0	0	0	multi-exon	TRUE	canonical	3	184	junction_2	7.07106781186548	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCATGTTTCCTTGAAC	NA	False	NA	NA	False	ACTAAA	-25	NA	116565603	116559475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116561065_116561703_116561857_116563077_116563273_116565434
transcript_9293.known	chr10	+	2201	4	FSM	ENSMUSG00000019857.8	ENSMUST00000020004.8	2201	4	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_3	57.7119282875444	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTTTGTCTAACTACA	1521	False	NA	NA	False	AATAAA	-35	NA	53473047	53485321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_53473395_53478443_53478560_53482204_53482382_53483760
transcript_92934.known	chr4	+	3033	11	FSM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_7	8.01810451416044	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGAAATATGATTTTGC	NA	False	NA	3	True	ATTAAA	-16	NA	116578144	116661439	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116578454_116598812_116599116_116608301_116608424_116628996_116629046_116649284_116649432_116657729_116657813_116658356_116658442_116658645_116658730_116658916_116659004_116659420_116659539_116659793
transcript_92939.known	chr4	+	1112	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106462.9	1112	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.3680624821877	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTCTCTGTAAATCTT	5618	False	NA	15	True	AATAAA	-19	NA	116565767	116572300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116565854_116566458_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
transcript_92955.nnic	chr4	-	2012	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	241	0	intron_retention	FALSE	canonical	2	4	junction_7	42.0500188065672	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	2272	False	NA	0	True	TTTAAA	-42	NA	116664504	116661198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664409
transcript_92957.nic	chr4	-	2131	8	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	4	0	intron_retention	FALSE	canonical	2	10	junction_7	40.0209129004794	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1943	False	NA	0	True	TTTAAA	-42	NA	116664833	116661198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116664002_116664664
transcript_92966.known	chr4	-	2090	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1939	False	NA	0	True	TTTAAA	-42	NA	116664837	116661198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
transcript_92969.nnic	chr4	+	1830	18	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	65.0266913523616	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664929	116676628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_116664969_116667792_116667886_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_9297.known	chr10	-	5137	13	FSM	ENSMUSG00000003746.17	ENSMUST00000003843.16	5137	13	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_11	2.28977194400568	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTCTTGTCACTGTG	5483	False	NA	NA	False	AATAAA	-19	NA	53951892	53780880	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_53783660_53784038_53784155_53795253_53795427_53796138_53796359_53801525_53801642_53809587_53809682_53810984_53811109_53853118_53853214_53890510_53890592_53901809_53901926_53906793_53906891_53950511_53951367_53951621
transcript_92972.nnic	chr4	+	1777	17	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_16	59.4809580874417	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTGTGTGTGTATAT	NA	False	NA	NA	False	AAGAAA	-23	NA	116664917	116675971	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116675766
transcript_92973.nic	chr4	+	1898	17	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-151	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	43.6183286446191	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664768	116676628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_92974.nnic	chr4	+	2033	17	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-5	0	intron_retention	FALSE	canonical	2	3	junction_1	67.020052969242	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664929	116676628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_116664969_116667792_116667886_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675480_116676451
transcript_92981.known	chr4	+	1654	16	FSM	ENSMUSG00000028687.18	ENSMUST00000102699.8	1654	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	29.5893374188894	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664919	116676628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_92988.nic	chr4	+	1860	15	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-3	0	intron_retention	FALSE	canonical	3	103	junction_1	29.7890542834451	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664916	116676628	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675480_116676451
transcript_9299.known	chr10	-	2847	13	FSM	ENSMUSG00000003746.17	ENSMUST00000105470.9	2847	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	3.57848509226398	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAAGCTTTTTTTTCCT	5570	False	NA	NA	False	AATAAA	-15	NA	53951805	53783105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_53783660_53784038_53784155_53795253_53795427_53796138_53796359_53801525_53801642_53809587_53809682_53810984_53811109_53853118_53853214_53890510_53890592_53901809_53901926_53906793_53906891_53950511_53951367_53951599
transcript_9300.known	chr10	-	7240	33	FSM	ENSMUSG00000038122.10	ENSMUST00000099739.5	7240	33	0	0	0	0	multi-exon	TRUE	non_canonical	1	5	junction_4	4.26639759486853	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCTTGTGAGAACATTAT	NA	False	NA	NA	False	AATAAA	-16	NA	56104785	55890388	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_55893801_55903994_55904184_55916234_55916376_55924958_55925114_55925857_55925974_55927484_55927555_55940569_55940654_55948571_55948698_55963626_55963721_55964401_55964511_55965812_55965936_55999606_55999696_56005156_56005274_56026889_56027009_56027861_56027950_56031775_56031915_56037230_56037314_56038106_56038309_56046939_56047068_56049937_56050081_56053587_56053681_56056575_56056717_56063838_56063930_56068935_56068996_56071451_56071597_56072503_56072566_56072653_56072758_56072883_56072963_56074530_56074657_56077983_56078053_56091045_56091215_56100659_56100822_56104573
transcript_93008.known	chr4	+	1483	14	FSM	ENSMUSG00000028687.18	ENSMUST00000155346.8	1483	14	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	50.6509110766964	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGATTCCCTACCCAAAAT	3020	False	NA	-22	True	NA	NA	NA	116671515	116676580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116671634_116672760_116672910_116672995_116673036_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_93009.known	chr4	-	1804	1	FSM	ENSMUSG00000043155.5	ENSMUST00000055436.5	1804	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGCCTCTGTGTCTT	7088	False	NA	-6	True	AATAAA	-26	NA	116678904	116677100	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116677100_116678900
transcript_93010.known	chr4	+	636	2	FSM	ENSMUSG00000086417.2	ENSMUST00000151670.2	636	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGTGTATAGAGTGCT	3311	False	NA	NA	False	AGTAAA	-16	NA	116682099	116687800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116682180_116687244
transcript_93011.known	chr4	-	1489	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGGCTCCTTTGTTCCT	NA	False	NA	-8	True	NA	NA	NA	116851610	116847161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
transcript_93017.known	chr4	+	4583	21	FSM	ENSMUSG00000046861.10	ENSMUST00000050067.10	4583	21	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_7	8.68964901477614	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATATATATGGATGTCTA	NA	False	NA	NA	False	ATTAAA	-19	NA	116852513	116862474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116852969_116853143_116853305_116853557_116853651_116853728_116853865_116854110_116854227_116854314_116854429_116854544_116854628_116855573_116855740_116855940_116856023_116856774_116856958_116857085_116857139_116857285_116857351_116857443_116857548_116857793_116857914_116858018_116858109_116859312_116859520_116859706_116859837_116859933_116860009_116860130_116860213_116860315_116860388_116860478
transcript_93026.known	chr4	+	1555	12	FSM	ENSMUSG00000028683.15	ENSMUST00000106448.9	1555	12	0	0	0	0	multi-exon	TRUE	canonical	3	567	junction_7	49.9305302519377	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCAGTGGTAGAG	NA	False	NA	20	True	AATAAA	-20	NA	116876598	116944049	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
transcript_9303.known	chr10	+	2140	2	FSM	ENSMUSG00000047669.9	ENSMUST00000063138.8	2140	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAAGCTTCTCTATTC	NA	False	NA	NA	False	AATAAA	-23	NA	55983012	55992976	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_55983126_55990949
transcript_9304.known	chr10	+	3071	2	FSM	ENSMUSG00000050953.11	ENSMUST00000068581.9	3071	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATAACCTGCATGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	56253425	56266511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_56253615_56263629
transcript_93046.nic	chr4	+	555	4	ISM	ENSMUSG00000028683.15	ENSMUST00000106447.9	3754	10	-26	28669	-20	-14734	5prime_fragment	FALSE	canonical	3	604	junction_1	61.4220373047546	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGGTAAGGTAATTACAGT	NA	False	NA	25	True	NA	NA	NA	116876578	116901788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632
transcript_93047.known	chr4	+	1369	10	FSM	ENSMUSG00000028683.15	ENSMUST00000070610.6	1369	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	208.510650466648	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTAGGTGTGGCTCAGT	1864	False	NA	13	True	AATAAA	-13	NA	116879351	116944042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116943885
transcript_93048.known	chr4	+	4382	22	FSM	ENSMUSG00000028681.12	ENSMUST00000030443.12	4382	22	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	13.5888776715328	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGATGGCTGGAGTTTT	NA	False	NA	2	True	AATATA	-16	NA	116953271	116972580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_116953625_116954043_116954237_116961929_116962120_116962226_116962297_116962430_116962523_116963131_116963328_116965095_116965218_116965351_116965500_116965579_116965712_116965800_116965957_116966052_116966146_116966489_116966616_116966708_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
transcript_9305.nic	chr10	+	2438	13	NIC	ENSMUSG00000019878.9	novel	2430	14	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_11	71.7650487509221	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTATTGTTTGTTGAGT	NA	False	NA	14	True	AATAAA	-15	NA	57362441	57388961	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592_57373718_57375511_57375588_57377465_57377528_57378718_57378807_57380677_57380827_57381241_57381479_57382292_57382399_57385156_57385211_57387539_57387625_57387998
transcript_93051.nic	chr4	+	2538	10	ISM	ENSMUSG00000028681.12	ENSMUST00000144620.8	4356	22	13389	0	-750	0	3prime_fragment	FALSE	canonical	3	29	junction_6	5.35412613473634	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGATGGCTGGAGTTTT	NA	False	NA	2	True	AATATA	-16	NA	116966681	116972580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
transcript_93053.known	chr4	-	1620	8	FSM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_7	6.73401357108153	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAAGCTTTTCCTCCTGAG	9747	False	NA	NA	False	NA	NA	NA	116982815	116977371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925_116980980_116981135_116981338_116982525
transcript_93056.known	chr4	-	1956	4	FSM	ENSMUSG00000073771.12	ENSMUST00000153924.8	1956	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	4.96655480858378	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAATGTCAGCATTCAA	NA	False	NA	-14	True	NA	NA	NA	116979527	116976415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116978059_116978394_116978527_116978610_116978680_116979415
transcript_93059.known	chr4	-	2378	15	FSM	ENSMUSG00000028680.15	ENSMUST00000076859.12	2378	15	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_10	17.1138146846699	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGGCCTTATCATTCC	3219	False	NA	2	True	AATAAA	-15	NA	116991160	116985851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116986376_116986482_116986597_116987156_116987287_116987439_116987603_116987704_116987789_116987920_116988015_116988258_116988351_116988569_116988697_116988806_116989006_116989097_116989194_116989923_116990012_116990101_116990232_116990385_116990503_116990591_116990700_116990848
transcript_93067.known	chr4	-	2512	14	FSM	ENSMUSG00000028680.15	ENSMUST00000126135.2	2512	14	0	0	0	0	multi-exon	TRUE	canonical	3	135	junction_9	17.6963206151338	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGGCCTTATCATTCC	3238	False	NA	2	True	AATAAA	-15	NA	116991141	116985851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_116986376_116986482_116986597_116987156_116987603_116987704_116987789_116987920_116988015_116988258_116988351_116988569_116988697_116988806_116989006_116989097_116989194_116989923_116990012_116990101_116990232_116990385_116990503_116990591_116990700_116990848
transcript_9307.known	chr10	+	2604	12	FSM	ENSMUSG00000019878.9	ENSMUST00000079833.6	2604	12	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_10	23.7006119808005	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTCCTTCTCATTGTT	NA	False	NA	13	True	NA	NA	NA	57362491	57389231	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592_57373718_57375511_57375588_57377465_57377528_57378718_57378807_57380677_57380827_57381241_57381479_57382292_57382399_57387539_57387625_57387998
transcript_93081.known	chr4	-	860	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_5	1894.95893359197	1211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTTTGGAGAGGCTGG	NA	False	NA	-13	True	AATAAA	-30	NA	117013440	117011023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
transcript_93087.nic	chr4	-	697	5	ISM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	-71	545	-71	0	5prime_fragment	FALSE	canonical	3	8358	junction_4	1998.07512058481	2365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACGATGAAAGGAAAAAGAA	NA	False	NA	NA	False	AAGAAA	-13	NA	117013511	117011568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
transcript_93094.known	chr4	-	523	4	FSM	ENSMUSG00000047675.16	ENSMUST00000144051.8	523	4	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_3	2305.8312070825	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGCGACTTGGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	117013266	117011706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117012011_117012204_117012305_117012767_117012875_117013254
transcript_93096.known	chr4	-	1120	3	FSM	ENSMUSG00000047675.16	ENSMUST00000140226.2	1120	3	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_2	2777.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAATTCAAAAGAAAT	NA	False	NA	NA	False	TTTAAA	-13	NA	117013281	117011587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117012011_117012204_117012875_117013254
transcript_93098.known	chr4	-	353	2	FSM	ENSMUSG00000047675.16	ENSMUST00000137423.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	3	13045	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	-20	True	AATAAA	-23	NA	117011694	117011030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117011185_117011495
transcript_931.known	chr1	-	4663	21	FSM	ENSMUSG00000010453.13	ENSMUST00000010597.10	4663	21	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_19	30.7481300244421	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTTCAGCTTGTTTTC	NA	False	NA	-7	True	AATAAA	-21	NA	36408262	36374810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406849_36407116_36408185
transcript_93100.known	chr4	-	2842	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGCAGATTCTGTGTGA	NA	False	NA	88	True	AATAAA	-17	NA	117039836	117016835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
transcript_93110.known	chr4	-	1009	5	FSM	ENSMUSG00000028678.14	ENSMUST00000141675.8	1009	5	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_2	14.142135623731	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAACAGCAGA	NA	False	NA	NA	False	NA	NA	NA	117039789	117031604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
transcript_93111.known	chr4	+	991	3	FSM	ENSMUSG00000048772.16	ENSMUST00000062824.12	991	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTATCTATCCTGGGG	NA	False	NA	NA	False	AATAAA	-18	NA	117109147	117125777	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_117109332_117123056_117123173_117125086
transcript_93114.nic	chr4	-	3207	15	NIC	ENSMUSG00000028677.20	novel	3029	15	NA	NA	-101	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	471.87085313761	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	NA	False	NA	NA	False	ATTAAA	-14	NA	117354350	117128660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117346785_117347528_117353879
transcript_93115.known	chr4	-	3029	15	FSM	ENSMUSG00000028677.20	ENSMUST00000030439.15	3029	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	470.113273367088	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTCTGTGTTTGAAGA	NA	False	NA	NA	False	ATTAAA	-15	NA	117354249	117128659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117346785_117347528_117353879
transcript_9313.known	chr10	-	2880	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTGGTAGCATTACA	NA	False	NA	NA	False	AATAAA	-16	NA	57408626	57391869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
transcript_93134.nic	chr4	-	2142	11	NIC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	-181	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	343.341753942045	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9389	False	NA	NA	False	ATTAAA	-14	NA	117146824	117128660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146395
transcript_93135.known	chr4	-	1949	11	FSM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	319.717437747771	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACAAGCTGCTGTCTGT	9570	False	NA	NA	False	ATTAAA	-6	NA	117146643	117128668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146399
transcript_93138.known	chr4	-	1330	11	FSM	ENSMUSG00000028677.20	ENSMUST00000128122.9	1330	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	401.226232940968	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTATAAATGGGACACTTT	9186	False	NA	-38	True	AATATA	-23	NA	117147027	117129150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146920
transcript_93144.nic	chr4	-	2064	11	NIC	ENSMUSG00000028677.20	novel	3029	15	NA	NA	-181	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	375.814528723944	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9389	False	NA	NA	False	ATTAAA	-14	NA	117146824	117128660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117146395
transcript_93145.nic	chr4	-	2010	11	NIC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	-131	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	357.390878451032	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9439	False	NA	NA	False	ATTAAA	-14	NA	117146774	117128660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117146399
transcript_9317.nic	chr10	+	539	6	ISM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	-78	36264	-78	0	5prime_fragment	FALSE	canonical	3	81	junction_2	9.76524449258696	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCTGTAAAAATGAGCTGA	NA	False	NA	NA	False	AAGAAA	-5	NA	58091240	58105157	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_58091394_58091650_58091705_58092641_58092727_58094062_58094131_58103788_58103894_58105083
transcript_93176.nnic	chr4	+	1424	9	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-89	0	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	225.311693826574	165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407472	117531478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_117407560_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_93182.known	chr4	+	1719	9	FSM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	182.065535934179	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCTTGTGTCTAAGGC	NA	False	NA	25	True	AATAAA	-32	NA	117407561	117531494	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_117407928_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_93184.nnic	chr4	+	1358	8	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-99	0	at_least_one_novel_splicesite	TRUE	canonical	3	100	junction_1	221.525785111774	125	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407462	117531478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_117407560_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_9319.nic	chr10	+	894	6	ISM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	-12	35843	-12	293	5prime_fragment	FALSE	canonical	3	81	junction_2	9.76524449258696	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAAGAGAACAGAGTGAC	NA	False	NA	NA	False	AATAAA	-5	NA	58091306	58105578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_58091394_58091650_58091705_58092641_58092727_58094062_58094131_58103788_58103894_58105083
transcript_93198.nnic	chr4	+	1035	7	NNC	ENSMUSG00000033423.17	novel	596	4	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	242.081769931842	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407507	117531478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_117407560_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_93203.known	chr4	-	1566	11	FSM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	49.3527101586124	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539470	117531877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539410
transcript_93204.nic	chr4	-	1572	11	NIC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_10	51.6295458047037	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539470	117531882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
transcript_93208.known	chr4	-	1771	10	FSM	ENSMUSG00000009640.12	ENSMUST00000135582.8	1771	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	54.4190416928251	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539450	117531877	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
transcript_93213.known	chr4	-	2400	3	FSM	ENSMUSG00000048626.6	ENSMUST00000062747.6	2400	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAGAAAAAAAAGA	NA	False	NA	NA	False	ATTAAA	-14	NA	117622845	117615032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117616486_117617511_117618311_117622697
transcript_93219.known	chr4	+	3479	14	FSM	ENSMUSG00000028542.18	ENSMUST00000030269.14	3479	14	0	0	0	0	multi-exon	FALSE	canonical	2	62	junction_6	13.9750411501337	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGATGTGCTTTGTCT	NA	False	NA	27	True	AATGAA	-21	NA	117692247	117726502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_117692675_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
transcript_9323.nic	chr10	+	440	5	ISM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	-78	37553	-78	0	5prime_fragment	FALSE	canonical	3	81	junction_2	9.09670269933013	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTAAAATGAAGCAAGAGG	NA	False	NA	NA	False	AAAAAG	-41	NA	58091240	58103868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_58091394_58091650_58091705_58092641_58092727_58094062_58094131_58103788
transcript_93230.known	chr4	-	2312	8	FSM	ENSMUSG00000028541.15	ENSMUST00000030266.12	2312	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_2	8.55951553082585	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTGTCTGTCTGTGA	NA	False	NA	-9	True	AGTAAA	-17	NA	117740684	117730327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738868_117738972_117739015_117740298
transcript_93234.known	chr4	-	1801	8	FSM	ENSMUSG00000028541.15	ENSMUST00000106421.9	1801	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	24.2630146014674	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGGGACCATGGGGTT	NA	False	NA	NA	False	NA	NA	NA	117740309	117730498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511_117738903_117738972_117739015_117740298
transcript_93237.known	chr4	-	1365	8	FSM	ENSMUSG00000078588.11	ENSMUST00000106422.9	1365	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.53143502095276	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAGTTCTGCACACACTG	NA	False	NA	NA	False	ATTAAA	-18	NA	117729751	117726456	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117727026_117727106_117727186_117727302_117727373_117727712_117727768_117728260_117728387_117728943_117729058_117729185_117729378_117729591
transcript_93239.known	chr4	-	1000	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGCTTCTGTTGGCCCC	NA	False	NA	-1	True	AATAAA	-21	NA	117744526	117741522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
transcript_9324.known	chr10	+	6547	23	FSM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_12	11.5498381084143	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGACTACTGTTCTT	NA	False	NA	12	True	ATTAAA	-22	NA	58091318	58141421	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_58091394_58091650_58091705_58092641_58092727_58094062_58094131_58103788_58103894_58105083_58107529_58108154_58108228_58110557_58110659_58110757_58110857_58112399_58112520_58114608_58114774_58116413_58116519_58117178_58117342_58121764_58121866_58121954_58122033_58122963_58123102_58124454_58124577_58126121_58126299_58128386_58128605_58130532_58130728_58131909_58132062_58134485_58134688_58139915
transcript_93240.nic	chr4	-	1094	8	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_7	877.288982709616	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	117744568	117741526	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743892_117744366
transcript_9325.known	chr10	+	4327	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTACATATCATTTAG	NA	False	NA	10	True	AATAAA	-19	NA	58159287	58260513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
transcript_93257.known	chr4	-	2555	6	FSM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	6.70522184569608	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTGGGCCTAAACAAA	NA	False	NA	NA	False	AATAAA	-13	NA	117749229	117745839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748906
transcript_93261.nic	chr4	-	2505	5	NIC	ENSMUSG00000028540.7	novel	2555	6	NA	NA	-21	0	intron_retention	FALSE	canonical	3	66	junction_1	6.75925291729789	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	-7	True	AATAAA	-15	NA	117749250	117746103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117746874_117746951_117747129_117747214_117748316_117748511_117748625_117748906
transcript_93263.nic	chr4	-	2388	5	NIC	ENSMUSG00000028540.7	novel	2555	6	NA	NA	-21	-2	intron_retention	FALSE	canonical	3	70	junction_2	5.11737237261468	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTTTCTCTTTATTC	NA	False	NA	-9	True	AATAAA	-13	NA	117749250	117746105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748906
transcript_93266.known	chr4	-	2558	4	FSM	ENSMUSG00000028540.7	ENSMUST00000139332.2	2558	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	7.78888096369861	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	-7	True	AATAAA	-15	NA	117749217	117746103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117746874_117746951_117748316_117748511_117748625_117748906
transcript_93267.nic	chr4	-	2787	3	NIC	ENSMUSG00000028540.7	novel	2558	4	NA	NA	-21	0	intron_retention	FALSE	canonical	3	66	junction_1	8	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	-7	True	AATAAA	-15	NA	117749250	117746103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117746874_117746951_117748625_117748906
transcript_93271.known	chr4	-	627	2	FSM	ENSMUSG00000028540.7	ENSMUST00000126554.2	627	2	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCTTGTGCACTTCGGT	NA	False	NA	NA	False	NA	NA	NA	117749183	117748274	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117748625_117748906
transcript_93272.known	chr4	-	2149	5	FSM	ENSMUSG00000028540.7	ENSMUST00000183773.2	2149	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	31.1889403475014	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTCTCCTGTTTCTC	NA	False	NA	-16	True	AATAAA	-6	NA	117749220	117746112	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748917
transcript_93273.nic	chr4	-	3532	20	NIC	ENSMUSG00000033365.15	novel	3595	20	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	17.6376266140367	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTCCTTTCTCTGT	NA	False	NA	0	True	AGTAAA	-19	NA	117772213	117751682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117751855_117751940_117752043_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114_117758253_117758754_117758836_117760317_117760462_117760594_117760730_117760890_117760918_117760994_117761177_117761573_117761722_117761806_117761928_117762101_117762269_117762377_117762520_117762639_117762781_117768969_117769707_117771484
transcript_93277.known	chr4	-	3595	20	FSM	ENSMUSG00000033365.15	ENSMUST00000036156.6	3595	20	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_19	11.8213853822033	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTCCTTTCTCTGT	NA	False	NA	0	True	AGTAAA	-19	NA	117772196	117751682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117751855_117751940_117752123_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114_117758253_117758754_117758836_117760317_117760462_117760594_117760730_117760890_117760918_117760994_117761177_117761573_117761722_117761806_117761928_117762101_117762269_117762377_117762520_117762639_117762781_117768969_117769707_117771484
transcript_93297.nic	chr4	-	2704	13	NIC	ENSMUSG00000028538.13	novel	2549	12	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	23.5914297056273	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTCCTGTTGTTTTC	1811	False	NA	-5	True	AATAAA	-14	NA	117992162	117789354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117814631_117814716_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991586
transcript_9330.known	chr10	+	4351	10	FSM	ENSMUSG00000019920.19	ENSMUST00000238939.2	4351	10	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	82.3939647795806	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTACATATCATTTAG	NA	False	NA	10	True	AATAAA	-19	NA	58207275	58260513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_58207522_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
transcript_93305.nic	chr4	-	2656	12	NIC	ENSMUSG00000028538.13	novel	2549	12	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	26.3545438866066	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTCCTGTTGTTTTC	1811	False	NA	-5	True	AATAAA	-14	NA	117992162	117789354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117814631_117814716_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991586
transcript_93309.known	chr4	-	2549	12	FSM	ENSMUSG00000028538.13	ENSMUST00000030263.9	2549	12	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_11	17.3052325722645	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGTTGTTTTCTCTG	1886	False	NA	-1	True	AATAAA	-18	NA	117992087	117789350	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991586
transcript_93310.known	chr4	-	2225	12	FSM	ENSMUSG00000028538.13	ENSMUST00000106410.8	2225	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_11	18.1899981599189	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTCCTGTTGTTTTC	1862	False	NA	-5	True	AATAAA	-14	NA	117992111	117789354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991930
transcript_93314.nic	chr4	-	2572	11	NIC	ENSMUSG00000028538.13	novel	2549	12	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	21.0437639218843	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTCCTGTTGTTTTC	1811	False	NA	-5	True	AATAAA	-14	NA	117992162	117789354	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991586
transcript_93315.known	chr4	-	2143	11	FSM	ENSMUSG00000028538.13	ENSMUST00000097912.8	2143	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	21.8286508973871	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGCCTCCTGTTGTTT	1894	False	NA	-7	True	AATAAA	-12	NA	117992079	117789356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991930
transcript_93328.known	chr4	-	4550	22	FSM	ENSMUSG00000033326.16	ENSMUST00000097911.9	4550	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	19.1806071752168	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTGACTGTGGTCTGCC	NA	False	NA	-3	True	AATAAA	-14	NA	118036851	117994155	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034761_118036798
transcript_93329.known	chr4	-	4536	22	FSM	ENSMUSG00000033326.16	ENSMUST00000106403.8	4536	22	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_21	18.9977919709961	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGTGCATTACCTTG	NA	False	NA	-10	True	TATAAA	-14	NA	118037175	117994202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034761_118037089
transcript_9333.nic	chr10	+	1432	2	ISM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	92	24369	92	-10014	5prime_fragment	FALSE	canonical	3	317	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCATTTGTGAATTGTC	NA	False	NA	NA	False	AAAACA	-43	NA	58159379	58236144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_58159510_58234842
transcript_93335.known	chr4	-	7656	33	FSM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	0	0	0	0	multi-exon	TRUE	canonical	3	357	junction_20	50.8611774834205	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCTGTCTCAGCTCCTG	NA	False	NA	-2	True	AATAAA	-30	NA	118148602	118065409	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_118067087_118067565_118067702_118067813_118067969_118068197_118068324_118068555_118068683_118068896_118069076_118069160_118069447_118069523_118069679_118069916_118070037_118070653_118070830_118070937_118071062_118074288_118074387_118077689_118077806_118080422_118080578_118080914_118081134_118081695_118081790_118081874_118082129_118082225_118082324_118082995_118083575_118083650_118083769_118087891_118088086_118088682_118088989_118092155_118092301_118092745_118092883_118093109_118093692_118094935_118095206_118106095_118106207_118114685_118114875_118126372_118126515_118126675_118126822_118134545_118134682_118141969_118142050_118148376
transcript_93342.known	chr4	+	936	8	FSM	ENSMUSG00000006395.17	ENSMUST00000194248.2	936	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	6.43333157097011	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217186	118219941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_118217429_118217502_118217587_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
transcript_93344.nic	chr4	+	1011	7	NIC	ENSMUSG00000006395.17	novel	936	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	22	junction_3	5.56776436283002	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217185	118219941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_118217587_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
transcript_93346.known	chr4	+	843	7	FSM	ENSMUSG00000006395.17	ENSMUST00000106393.8	843	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.6249253283145	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217195	118219941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_118217429_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
transcript_93347.known	chr4	+	1296	1	FSM	ENSMUSG00000006395.17	ENSMUST00000179719.2	1296	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATACA	-12	NA	118217195	118218491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_118217200_118218500
transcript_93350.known	chr4	+	1145	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	88.2754527349226	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266562	118272308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
transcript_93351.known	chr4	+	1134	7	FSM	ENSMUSG00000006392.17	ENSMUST00000084319.11	1134	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	198.998673920763	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266533	118272308	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
transcript_93357.nic	chr4	+	568	5	ISM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	-61	2367	-32	0	5prime_fragment	FALSE	canonical	3	450	junction_1	106.862937915818	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGGAGGGATGTGGCAG	NA	False	NA	NA	False	NA	NA	NA	118266501	118269941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860
transcript_9336.nic	chr10	+	5365	20	ISM	ENSMUSG00000003226.8	ENSMUST00000003310.7	9608	29	-82	15672	-80	-15672	5prime_fragment	TRUE	canonical	3	152	junction_18	19.0043004318246	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAAATCAAGAGAAAAAGA	NA	False	NA	NA	False	TTTAAA	-18	NA	58282661	58314506	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_58282874_58287805_58287874_58289133_58289246_58290394_58290548_58291040_58291272_58291630_58291777_58293413_58293607_58296339_58296428_58297657_58297868_58299640_58299823_58299904_58300081_58300226_58300351_58300886_58301049_58301265_58301404_58301484_58301632_58302936_58303117_58303211_58303296_58306448_58306585_58311065_58311161_58311978
transcript_93364.known	chr4	-	1793	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	0	0	0	0	multi-exon	TRUE	canonical	3	1043	junction_4	200.755117703013	1457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGCATCCTTCCTAC	NA	False	NA	-11	True	AATAAA	-17	NA	118294549	118290097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
transcript_93371.known	chr4	+	1811	8	FSM	ENSMUSG00000006390.16	ENSMUST00000006557.13	1811	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_5	11.9505785019225	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTGTTCAACGGATGC	NA	False	NA	NA	False	AATAAA	-20	NA	118285289	118290150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_118285413_118287692_118287753_118287911_118288103_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
transcript_9338.known	chr10	+	9608	29	FSM	ENSMUSG00000003226.8	ENSMUST00000003310.7	9608	29	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_18	69.5662490738439	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGCAGATAATTTTATTT	NA	False	NA	NA	False	NA	NA	NA	58282743	58330178	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_58282874_58287805_58287874_58289133_58289246_58290394_58290548_58291040_58291272_58291630_58291777_58293413_58293607_58296339_58296428_58297657_58297868_58299640_58299823_58299904_58300081_58300226_58300351_58300886_58301049_58301265_58301404_58301484_58301632_58302936_58303117_58303211_58303296_58306448_58306585_58311065_58311161_58311978_58316642_58318850_58319022_58319718_58319806_58320263_58320443_58321501_58321704_58324394_58324497_58326431_58326578_58328232_58328507_58328623_58328959_58329484
transcript_93389.known	chr4	-	4091	23	FSM	ENSMUSG00000033191.15	ENSMUST00000047421.6	4091	23	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.78334945180064	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGGTGTGTCTGCACT	NA	False	NA	NA	False	AATAAA	-14	NA	118347258	118328387	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_118328790_118329768_118329869_118329988_118330086_118330164_118330206_118331306_118331378_118331496_118331611_118332620_118332812_118333007_118333119_118333256_118333468_118335594_118335786_118336058_118336350_118336809_118337101_118337298_118337437_118337607_118337767_118339452_118339598_118339843_118339990_118340943_118341073_118341272_118341414_118341544_118341677_118341813_118341970_118343383_118343495_118343573_118343883_118346844
transcript_93391.known	chr4	+	958	3	FSM	ENSMUSG00000028536.13	ENSMUST00000030261.6	958	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTTTTTATATTTTTC	8940	False	NA	NA	False	NA	NA	NA	118384439	118387425	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_118384535_118386395_118386509_118386675
transcript_93393.known	chr4	-	1864	4	FSM	ENSMUSG00000050854.10	ENSMUST00000060214.10	1864	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.18993502999218	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTCTGCACCATGGCA	8325	False	NA	NA	False	AATAAA	-23	NA	118400925	118398137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118400796
transcript_93395.known	chr4	-	929	4	FSM	ENSMUSG00000050854.10	ENSMUST00000128098.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACCCTGGCTGGGCTGG	8009	False	NA	NA	False	NA	NA	NA	118401241	118399055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118401129
transcript_93396.known	chr4	-	717	2	FSM	ENSMUSG00000050854.10	ENSMUST00000150044.2	717	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGCCCTGCTGGTTCT	9091	False	NA	NA	False	NA	NA	NA	118400159	118399213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_118399569_118399797
transcript_93401.known	chr4	+	2960	9	FSM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_5	110.190105612981	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTCATGATGTCTGTT	NA	False	NA	6	True	NA	NA	NA	118477995	118484973	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
transcript_93408.known	chr4	+	805	3	FSM	ENSMUSG00000028729.16	ENSMUST00000130219.2	805	3	0	0	0	0	multi-exon	FALSE	canonical	3	2481	junction_2	26.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGTTGGTGTGTCTGTC	NA	False	NA	NA	False	AATAAA	-40	NA	118478044	118479128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_118478195_118478278_118478363_118478557
transcript_9341.known	chr10	+	2455	16	FSM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_12	10.0598210719674	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTAGAGTCCCTTCTTT	943	False	NA	NA	False	AATAAA	-24	NA	58333769	58412066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619_58376737_58380738_58380932_58397722_58397900_58409410_58409550_58411510
transcript_93414.known	chr4	-	1588	2	FSM	ENSMUSG00000045268.14	ENSMUST00000106355.5	1588	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTACTTATTTGGGGA	NA	False	NA	2	True	AGTAAA	-19	NA	119031392	119026709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119028240_119031334
transcript_93415.known	chr4	-	241	2	FSM	ENSMUSG00000045268.14	ENSMUST00000154226.2	241	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCGAGGAAGGAGAAGGGG	NA	False	NA	NA	False	NA	NA	NA	119031053	119028192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119028240_119030859
transcript_93416.known	chr4	+	733	3	FSM	ENSMUSG00000028643.12	ENSMUST00000030395.9	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_2	4.5	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052502	119058495	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_119052684_119053068_119053219_119058093
transcript_93425.known	chr4	-	657	6	FSM	ENSMUSG00000078584.10	ENSMUST00000046260.13	657	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	170.314532556679	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGCACTGAACCCACCT	NA	False	NA	NA	False	NA	NA	NA	119089875	119083578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119085861_119085942_119089550_119089667_119089779
transcript_93430.known	chr4	-	7151	5	FSM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_4	34.1869858279434	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCTTGTTCCCCGACT	NA	False	NA	NA	False	NA	NA	NA	119089909	119077038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
transcript_93431.nnic	chr4	-	941	5	NNC	ENSMUSG00000078584.10	novel	7151	5	NA	NA	-2	370	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	164.079820514285	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCATTTGTCTTTCTTTG	NA	False	NA	-8	True	NA	NA	NA	119089911	119083208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089821
transcript_93432.known	chr4	-	441	5	FSM	ENSMUSG00000078584.10	ENSMUST00000144309.2	441	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	161.922049147113	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTCGTGGACTCCATATG	NA	False	NA	NA	False	NA	NA	NA	119089882	119083668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089832
transcript_93436.nnic	chr4	-	742	5	NNC	ENSMUSG00000078584.10	novel	7151	5	NA	NA	-2	171	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	164.079820514285	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTTGATGATGTAGCTG	NA	False	NA	NA	False	NA	NA	NA	119089911	119083407	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089821
transcript_93445.known	chr4	+	3188	15	FSM	ENSMUSG00000028641.17	ENSMUST00000121111.9	3188	15	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_5	38.1110755769586	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGTGTGTGGTTTGTG	NA	False	NA	1	True	NA	NA	NA	119090111	119106169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_119090628_119092442_119092596_119093973_119094164_119095061_119095194_119095842_119095983_119098313_119098404_119098678_119098732_119098879_119099002_119101218_119101347_119101581_119101678_119102153_119102305_119103831_119103950_119104327_119104404_119104641_119104783_119105087
transcript_93448.known	chr4	+	3188	15	FSM	ENSMUSG00000028641.17	ENSMUST00000030393.13	3188	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	108.340567524028	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTGTGGTTTGTGTAT	NA	False	NA	4	True	NA	NA	NA	119090135	119106172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_119090628_119092442_119092596_119093973_119094164_119095061_119095194_119095842_119095983_119098313_119098404_119098678_119098732_119098858_119099002_119101218_119101347_119101581_119101678_119102153_119102305_119103831_119103950_119104327_119104404_119104641_119104783_119105087
transcript_9347.nic	chr10	+	1909	12	ISM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	-60	34871	-60	-34871	5prime_fragment	FALSE	canonical	3	46	junction_9	6.71497647731614	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACCACACATACACAGAG	883	False	NA	NA	False	NA	NA	NA	58333709	58377195	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619
transcript_93475.known	chr4	-	1628	8	FSM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	0	0	0	0	multi-exon	FALSE	canonical	3	9851	junction_2	327.608589257214	8826	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119151801	119135177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151400
transcript_93495.known	chr4	-	800	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106318.8	800	10	0	0	0	0	multi-exon	TRUE	canonical	2	32	junction_8	163.771144144263	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9582	False	NA	-3	True	AATAAA	-19	NA	119177743	119157206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119157381_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_93496.known	chr4	-	1288	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106321.9	1288	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	172.260640876149	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTACCTTGTCTAGCCTG	9644	False	NA	-2	True	NA	NA	NA	119177681	119164356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_93500.nic	chr4	-	1901	9	NIC	ENSMUSG00000028637.17	novel	1789	5	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	4.28478412525065	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTTAGTAATTT	9689	False	NA	NA	False	NA	NA	NA	119272752	119209443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
transcript_93504.nic	chr4	-	731	4	ISM	ENSMUSG00000028637.17	ENSMUST00000238609.2	1034	6	-24	5359	-1	-5359	5prime_fragment	FALSE	canonical	3	15	junction_3	4.32049379893857	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTGGAAATAGAAAAACTG	9741	False	NA	NA	False	NA	NA	NA	119272700	119255415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_119255437_119258196_119258348_119261270_119261462_119272332
transcript_93505.known	chr4	-	2523	15	FSM	ENSMUSG00000028637.17	ENSMUST00000063642.10	2523	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	6.95062763279662	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAATTGTTTGATATAC	9723	False	NA	NA	False	ATTAAA	-22	NA	119272718	119181042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119181391_119181737_119181806_119188319_119188435_119188678_119188816_119190776_119190919_119196957_119197071_119206926_119207072_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258342_119261270_119261462_119272332
transcript_93506.known	chr4	-	1128	4	FSM	ENSMUSG00000028637.17	ENSMUST00000131141.3	1128	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	4.92160768674447	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTTAGTAATTT	2105	False	NA	NA	False	NA	NA	NA	119217111	119209443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754
transcript_93507.known	chr4	-	1034	6	FSM	ENSMUSG00000028637.17	ENSMUST00000238609.2	1034	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.84081444212014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCTTGGCAGTTTATC	9765	False	NA	NA	False	TTTAAA	-5	NA	119272676	119250056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119250217_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
transcript_93509.known	chr4	-	1443	3	FSM	ENSMUSG00000028636.15	ENSMUST00000030385.13	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_2	22	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5505	False	NA	-4	True	AATAAA	-30	NA	119279617	119275726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119276491_119278776_119278881_119279042
transcript_93510.known	chr4	-	954	3	FSM	ENSMUSG00000028636.15	ENSMUST00000106316.2	954	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	146.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5549	False	NA	-4	True	AATAAA	-30	NA	119279573	119275726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119276491_119278776_119278881_119279487
transcript_93511.known	chr4	-	1543	2	FSM	ENSMUSG00000028636.15	ENSMUST00000140641.2	1543	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5567	False	NA	-4	True	AATAAA	-30	NA	119279555	119275726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119276491_119278776
transcript_93512.known	chr4	-	4097	5	FSM	ENSMUSG00000048899.9	ENSMUST00000049994.8	4097	5	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_2	4.35889894354067	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTCCTATGTCTTGTCT	9973	False	NA	-4	True	AATATA	-24	NA	119349825	119322479	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_119325723_119327663_119327868_119331715_119331803_119334987_119335219_119349493
transcript_93513.known	chr4	+	4789	13	FSM	ENSMUSG00000032998.17	ENSMUST00000044564.15	4789	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	28.6078611962206	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCAGCCTGATGGTCTGT	NA	False	NA	23	True	AATAAA	-19	NA	119396857	119486316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605_119459690_119467186_119467289_119473704_119473834_119476480_119476662_119477131_119477546_119478797_119478900_119480417_119480610_119482093_119482202_119483485
transcript_93515.known	chr4	+	4660	12	FSM	ENSMUSG00000032998.17	ENSMUST00000106310.9	4660	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	23.2197550545519	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCAGCCTGATGGTCTGT	NA	False	NA	23	True	AATAAA	-19	NA	119396884	119486316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605_119459690_119473704_119473834_119476480_119476662_119477131_119477546_119478797_119478900_119480417_119480610_119482093_119482202_119483485
transcript_93518.known	chr4	+	3071	5	FSM	ENSMUSG00000032998.17	ENSMUST00000161196.2	3071	5	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	12.9903810567666	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAAGCAATATA	NA	False	NA	NA	False	NA	NA	NA	119396888	119462061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605
transcript_93519.known	chr4	+	594	3	FSM	ENSMUSG00000023247.3	ENSMUST00000024015.3	594	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTGCCTTCGTTTCTT	NA	False	NA	NA	False	AATAAA	-18	NA	119494900	119496668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_119495023_119495798_119496010_119496407
transcript_93520.known	chr4	+	1359	3	FSM	ENSMUSG00000028634.18	ENSMUST00000136547.2	1359	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGCATTATTATTACCA	NA	False	NA	NA	False	ATTAAA	-32	NA	119671551	119730534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_119671988_119729233_119729470_119729847
transcript_93524.known	chr4	+	3353	17	FSM	ENSMUSG00000000085.17	ENSMUST00000000087.13	3353	17	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_13	8.94776508408664	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTGTCTTTTTAACCAG	NA	False	NA	12	True	AATAAA	-14	NA	120262503	120387381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_120262654_120304229_120304359_120310440_120310504_120310948_120310973_120319209_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120382194_120382261_120385352_120385496_120386330
transcript_93525.nnic	chr4	+	3278	17	NNC	ENSMUSG00000000085.17	novel	3353	17	NA	NA	-14	-1	intron_retention	FALSE	canonical	0	0	junction_16	17.5316677757708	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCGTGTCTTTTTAACCA	NA	False	NA	11	True	AATAAA	-13	NA	120262463	120387380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_120262654_120304229_120304359_120310440_120310504_120310948_120310973_120319209_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120382194_120382261_120385352_120385496_120386444
transcript_9353.known	chr10	-	1821	10	FSM	ENSMUSG00000019917.11	ENSMUST00000220156.2	1821	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16.7582668009803	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATTTTGCTCTTTCATG	NA	False	NA	NA	False	NA	NA	NA	59057669	58977448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_58977563_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
transcript_93530.known	chr4	+	1536	5	FSM	ENSMUSG00000000085.17	ENSMUST00000136801.8	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	26.8735464723211	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTGTCTTTTTAACCAG	NA	False	NA	12	True	AATAAA	-14	NA	120374822	120387381	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_120374904_120379651_120379847_120382194_120382261_120385352_120385496_120386330
transcript_93536.nnic	chr4	-	3488	19	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	292	0	at_least_one_novel_splicesite	TRUE	canonical	3	24	junction_18	179.180610999139	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	-18	True	AATAAA	-14	NA	120427181	120397064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120426272
transcript_93538.known	chr4	-	2705	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_8	52.1791784782653	1183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	-18	True	AATAAA	-14	NA	120427473	120397064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
transcript_9355.known	chr10	-	2532	10	FSM	ENSMUSG00000019917.11	ENSMUST00000165971.3	2532	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	10.8639169436269	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCTATGTATTTCCTAA	NA	False	NA	-29	True	AATAAA	-15	NA	59057669	58999941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_59000767_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
transcript_93569.known	chr4	+	1249	1	FSM	ENSMUSG00000070803.7	ENSMUST00000094814.6	1249	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAGTTTCCATTTCCTT	6119	False	NA	9	True	AATAAA	-18	NA	120523768	120525017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_120523800_120525000
transcript_9357.nic	chr10	-	4046	9	ISM	ENSMUSG00000019917.11	ENSMUST00000220156.2	1821	10	49	22489	49	4	5prime_fragment	FALSE	canonical	3	43	junction_1	6.39824194603486	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATGTATTTCCTAAAATG	NA	False	NA	-25	True	AATAAA	-19	NA	59057620	58999937	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
transcript_93578.known	chr4	-	2006	10	FSM	ENSMUSG00000032897.18	ENSMUST00000120779.8	2006	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	134.081235740792	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120672909	120614634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120672658
transcript_93582.known	chr4	-	1932	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_8	23.5424491839793	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682903	120614634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
transcript_936.known	chr1	-	2177	2	FSM	ENSMUSG00000010453.13	ENSMUST00000185614.2	2177	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAACTTTAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36408238	36404991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36407116_36408185
transcript_9360.known	chr10	+	4482	1	FSM	ENSMUSG00000098188.2	ENSMUST00000182161.2	4482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGAGTGTCTGTGGTTC	NA	False	NA	5	True	AATAAA	-22	NA	59057774	59062256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59057800_59062300
transcript_93603.known	chr4	+	6505	8	FSM	ENSMUSG00000032890.18	ENSMUST00000071093.9	6505	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	8.02546966010751	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGGCTTTCTGAGGAT	NA	False	NA	16	True	AATAAA	-21	NA	120712015	120753776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_120712320_120729673_120729848_120735034_120735283_120740271_120740414_120744130_120744241_120746184_120746287_120746551_120746692_120748491
transcript_93609.known	chr4	+	2099	4	FSM	ENSMUSG00000032890.18	ENSMUST00000132895.8	2099	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	1.24721912892465	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAACAACTTTTTCCTCC	NA	False	NA	NA	False	NA	NA	NA	120712012	120741641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_120712320_120729673_120729848_120735034_120735283_120740271
transcript_93612.known	chr4	-	1996	2	FSM	ENSMUSG00000028629.10	ENSMUST00000030375.9	1996	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGATGTTTGTGTG	NA	False	NA	-9	True	AATAAA	-22	NA	120782202	120778392	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_120779894_120781707
transcript_93613.known	chr4	-	914	2	FSM	ENSMUSG00000028629.10	ENSMUST00000156836.2	914	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCCCCATCGCCACAAAAG	NA	False	NA	NA	False	NA	NA	NA	120782214	120779465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_120779873_120781707
transcript_93616.nic	chr4	-	2424	6	NIC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	13.3476589707709	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACTGATTTACAGATTAG	6771	False	NA	NA	False	NA	NA	NA	120808961	120787333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_120788704_120791529_120791626_120792263_120792391_120804485_120804767_120806528_120806758_120808640
transcript_93617.nnic	chr4	-	2346	6	NNC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	17.91758912354	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACTGATTTACAGATTAG	6771	False	NA	NA	False	NA	NA	NA	120808961	120787333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_120788704_120791529_120791626_120792263_120792391_120804563_120804767_120806528_120806758_120808640
transcript_93618.known	chr4	-	2362	6	FSM	ENSMUSG00000064141.15	ENSMUST00000106280.8	2362	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	16.2898741554378	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACTGATTTACAGATTAG	6836	False	NA	NA	False	NA	NA	NA	120808896	120787333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_120788704_120791529_120791629_120792263_120792391_120804485_120804767_120806528_120806758_120808640
transcript_93623.nnic	chr4	-	1016	4	NNC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	-65	-3624	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.9241115365405	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATCCTTGTTTGCTTGCT	6771	False	NA	NA	False	NA	NA	NA	120808961	120792127	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_120792391_120804563_120804767_120806528_120806758_120808640
transcript_93626.known	chr4	-	2905	10	FSM	ENSMUSG00000032870.9	ENSMUST00000043200.8	2905	10	0	0	0	0	multi-exon	TRUE	canonical	3	186	junction_3	19.2841007882109	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTCGGCTGTCACTGTG	NA	False	NA	-2	True	AATAAA	-21	NA	120874444	120825513	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_120826862_120829086_120829404_120830289_120830456_120831582_120831690_120832568_120832651_120834147_120834235_120839323_120839403_120840303_120840390_120842391_120842526_120873945
transcript_9363.known	chr10	+	4043	15	FSM	ENSMUSG00000019916.15	ENSMUST00000009789.15	4043	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	56.7996838163088	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTATGTACAACTGTTT	NA	False	NA	NA	False	AATACA	-40	NA	59159117	59209126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59190161_59190233_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
transcript_93631.nic	chr4	-	933	5	ISM	ENSMUSG00000032870.9	ENSMUST00000043200.8	2905	10	-48	8634	-48	-5061	5prime_fragment	FALSE	canonical	3	212	junction_1	9.41740410091868	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGGGGAGCTTCTCAC	NA	False	NA	NA	False	AGTAAA	-5	NA	120874492	120834147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_120834235_120839323_120839403_120840303_120840390_120842391_120842526_120873945
transcript_93639.known	chr4	+	2924	32	FSM	ENSMUSG00000028626.6	ENSMUST00000030372.6	2924	32	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	8.6239508704552	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTCTTGTGGATGAGG	NA	False	NA	21	True	AATAAA	-22	NA	120896581	120912519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_120896984_120898161_120898237_120899490_120899527_120899612_120899676_120900892_120900947_120901058_120901095_120901191_120901216_120901471_120901526_120901861_120901916_120902019_120902068_120902195_120902253_120902337_120902392_120902680_120902735_120903122_120903177_120903266_120903321_120903425_120903480_120906858_120906913_120907272_120907327_120907551_120907606_120908410_120908456_120908847_120908902_120909164_120909219_120909423_120909478_120909554_120909627_120909777_120909814_120909949_120909995_120910087_120910121_120910254_120910402_120910635_120910691_120910966_120911156_120911449_120911528_120911792
transcript_9364.known	chr10	+	2918	15	FSM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	20.6288880070682	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGGGCTCCGGCTCATT	NA	False	NA	NA	False	NA	NA	NA	59159189	59208073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
transcript_93647.nnic	chr4	+	2635	31	NIC	ENSMUSG00000028626.6	novel	2924	32	NA	NA	-149	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	12.6901536633722	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTCTTGTGGATGAGG	NA	False	NA	21	True	AATAAA	-22	NA	120896795	120912519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_120896984_120899490_120899527_120899612_120899676_120900892_120900947_120901058_120901095_120901191_120901216_120901471_120901526_120901861_120901916_120902019_120902068_120902195_120902253_120902337_120902392_120902680_120902735_120903122_120903177_120903266_120903321_120903425_120903480_120906858_120906913_120907272_120907327_120907551_120907606_120908410_120908456_120908847_120908902_120909164_120909219_120909423_120909478_120909554_120909627_120909777_120909814_120909949_120909995_120910087_120910121_120910254_120910402_120910635_120910691_120910966_120911156_120911449_120911528_120911792
transcript_93663.nic	chr4	-	3521	11	NIC	ENSMUSG00000043207.11	novel	3429	10	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_9	109.30969764847	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	-1	True	ATTAAA	-20	NA	120955473	120916433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120946053_120946111_120952748_120952896_120955073
transcript_93665.known	chr4	-	3429	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	-1	True	ATTAAA	-20	NA	120955438	120916433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
transcript_93667.nnic	chr4	-	3377	9	NIC	ENSMUSG00000043207.11	novel	3429	10	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	91.8218383610348	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	-1	True	ATTAAA	-20	NA	120955473	120916433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120952748_120952896_120955073
transcript_93676.known	chr4	-	6242	8	FSM	ENSMUSG00000049878.14	ENSMUST00000056635.13	6242	8	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3290569453457	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTTACTCATAGAGTCT	6464	False	NA	-1	True	AATAAA	-18	NA	121072281	121003079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_121008220_121012052_121012195_121016388_121016526_121027814_121028018_121039802_121039936_121045411_121045494_121047300_121047456_121072031
transcript_9368.known	chr10	+	2387	14	FSM	ENSMUSG00000019916.15	ENSMUST00000092512.11	2387	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	50.4085087210412	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTCTCTGTGTGGTAT	NA	False	NA	18	True	NA	NA	NA	59159185	59207778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
transcript_93685.nic	chr4	-	3362	7	ISM	ENSMUSG00000049878.14	ENSMUST00000056635.13	6242	8	-57	6770	-57	-6770	5prime_fragment	FALSE	canonical	3	168	junction_3	17.3557547292598	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGTAGAAGGAAAGAATATG	6407	False	NA	NA	False	NA	NA	NA	121072338	121009849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_121012195_121016388_121016526_121027814_121028018_121039802_121039936_121045411_121045494_121047300_121047456_121072031
transcript_93692.known	chr4	-	2752	1	FSM	ENSMUSG00000049878.14	ENSMUST00000222814.2	2752	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	6464	False	NA	NA	False	NA	NA	NA	121072281	121069529	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_121069500_121072300
transcript_937.known	chr1	-	4527	21	FSM	ENSMUSG00000010453.13	ENSMUST00000185912.7	4527	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	57.849459807331	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTTCAGCTTGTTTTC	NA	False	NA	-7	True	AATAAA	-21	NA	36408238	36374810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404726_36406830_36406993_36408185
transcript_93704.known	chr4	-	2620	13	FSM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_12	208.332399997909	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779704	122752839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779606
transcript_93707.known	chr4	-	2768	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106257.10	2768	13	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_12	172.387322297462	1386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779849	122752839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
transcript_93708.known	chr4	-	2737	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	1437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779837	122752839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
transcript_9372.known	chr10	+	1091	4	FSM	ENSMUSG00000009646.14	ENSMUST00000009790.14	1091	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGATGAATGAATTCCAT	9407	False	NA	NA	False	AATAAA	-24	NA	59239481	59257798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59239804_59246798_59246888_59252169_59252336_59257284
transcript_93733.known	chr4	+	2381	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	20.6579282601136	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTGTATAATTTTAAG	NA	False	NA	103	True	ACTAAA	-25	NA	122730034	122752871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
transcript_93741.known	chr4	+	986	5	FSM	ENSMUSG00000028657.15	ENSMUST00000121870.8	986	5	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	15.8015030930605	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCTCGATGTAGTGGTAG	NA	False	NA	NA	False	AATAAA	-32	NA	122730038	122742768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225
transcript_93743.known	chr4	-	2151	14	FSM	ENSMUSG00000028655.12	ENSMUST00000030408.12	2151	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.06587742004239	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGCTTCTATTTGTG	9706	False	NA	NA	False	CATAAA	-16	NA	122854981	122840642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_122841098_122842324_122842502_122842593_122842738_122843059_122843173_122843271_122843356_122843944_122844029_122844206_122844329_122844453_122844545_122844983_122845142_122845581_122845661_122845782_122845922_122850524_122850650_122853062_122853195_122854733
transcript_93747.known	chr4	+	3293	3	FSM	ENSMUSG00000028654.14	ENSMUST00000106252.9	3293	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	34.5	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGTGGGGGTAGCAT	3471	False	NA	NA	False	AATAAA	-18	NA	122889736	122896278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_122889944_122890306_122890812_122893697
transcript_93748.known	chr4	+	3501	2	FSM	ENSMUSG00000028654.14	ENSMUST00000030407.8	3501	2	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGTGGGGGTAGCAT	3626	False	NA	NA	False	AATAAA	-18	NA	122889891	122896278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_122890812_122893697
transcript_93749.nnic	chr4	+	2208	12	NNC	ENSMUSG00000028653.17	novel	2074	11	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	39.9505893170158	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910340	122948742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122938958_122939044_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122945858_122945969_122946276_122946395_122947915
transcript_9375.known	chr10	-	2872	8	FSM	ENSMUSG00000009647.14	ENSMUST00000020312.13	2872	8	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_7	16.9957977999605	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGCATCTCGTTCTTTA	5630	False	NA	-1	True	AATAAA	-20	NA	59452514	59282805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_59284681_59287027_59287145_59290767_59290972_59292470_59292632_59302275_59302381_59303447_59303619_59326908_59326979_59452345
transcript_93750.known	chr4	+	2074	11	FSM	ENSMUSG00000028653.17	ENSMUST00000102649.4	2074	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	10.336343647538	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122945858_122945969_122946276_122946395_122947915
transcript_93753.known	chr4	+	1964	10	FSM	ENSMUSG00000028653.17	ENSMUST00000147165.8	1964	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	29.573929126016	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122946276_122946395_122947915
transcript_93768.nic	chr4	-	1300	10	NIC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_6	304.035816603534	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033785	123020907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030593_123030692_123031318_123031363_123032658_123032758_123033694
transcript_93771.known	chr4	-	1188	10	FSM	ENSMUSG00000028651.13	ENSMUST00000030404.5	1188	10	0	0	0	0	multi-exon	TRUE	canonical	3	832	junction_9	90.3078411481501	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033744	123020907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
transcript_93777.nic	chr4	-	2423	9	NIC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	-41	0	intron_retention	FALSE	canonical	3	832	junction_8	93.9161860384034	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033785	123020907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123030692_123031318_123031363_123032658_123032758_123033694
transcript_93782.known	chr4	+	2940	7	FSM	ENSMUSG00000002384.3	ENSMUST00000002457.2	2940	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.18993502999218	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTGGTCATGGTGTT	116	False	NA	NA	False	NA	NA	NA	122998957	123019884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_122999469_123008360_123008551_123008938_123009088_123015678_123015874_123016308_123016389_123016739_123016851_123018180
transcript_93785.known	chr4	+	3050	15	FSM	ENSMUSG00000011257.20	ENSMUST00000106241.8	3050	15	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_10	103.994922364272	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	False	NA	8	True	AATAAA	-31	NA	123176624	123192625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189067_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
transcript_93786.known	chr4	+	3019	15	FSM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	59.8703105189263	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	False	NA	8	True	AATAAA	-31	NA	123176703	123192625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
transcript_93790.known	chr4	+	2700	14	FSM	ENSMUSG00000011257.20	ENSMUST00000078734.12	2700	14	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_10	114.785830929817	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	False	NA	8	True	AATAAA	-31	NA	123176887	123192625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189067_123189722_123189851_123191471_123191566_123191653_123191887_123192305
transcript_93792.nic	chr4	+	2928	14	ISM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	-229	739	-143	87	5prime_fragment	FALSE	canonical	3	253	junction_1	60.6898215343382	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTTGACAGTTCGTGTT	NA	False	NA	NA	False	AAGAAA	-5	NA	123176474	123191886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653
transcript_93804.known	chr4	-	1917	7	FSM	ENSMUSG00000032726.13	ENSMUST00000102641.10	1917	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	3.09569593683445	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAAAAAGAACCAT	NA	False	NA	NA	False	NA	NA	NA	123236596	123206437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_123207210_123209636_123209748_123210145_123210226_123210654_123210850_123218353_123218503_123218891_123219082_123236176
transcript_93805.nnic	chr4	-	2443	7	NNC	ENSMUSG00000032726.13	novel	1917	7	NA	NA	-51	57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	7.28964257620968	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACATGTGTCCTGGGCCTG	NA	False	NA	NA	False	AGTAAA	-19	NA	123237096	123206380	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_123207210_123209636_123209748_123210145_123210226_123210654_123210850_123218353_123218472_123218891_123219082_123236176
transcript_93807.known	chr4	-	2405	7	FSM	ENSMUSG00000032726.13	ENSMUST00000040496.6	2405	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.08676387515643	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAAAAAGAACCAT	NA	False	NA	NA	False	NA	NA	NA	123237045	123206437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_123207210_123209597_123209748_123210145_123210226_123210654_123210850_123218353_123218503_123218891_123219082_123236176
transcript_9381.known	chr10	-	535	2	FSM	ENSMUSG00000009647.14	ENSMUST00000162012.2	535	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGAAACTCACGTTCTAA	5667	False	NA	NA	False	AATAAA	-43	NA	59452477	59438596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_59439000_59452345
transcript_93812.known	chr4	-	5706	39	FSM	ENSMUSG00000028649.22	ENSMUST00000147030.2	5706	39	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_14	13.4995896110804	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGTCTTAGAAACAGAAA	7085	False	NA	NA	False	NA	NA	NA	123558545	123350141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_123350543_123351579_123351805_123352946_123353181_123354877_123355028_123373979_123374116_123377439_123377529_123377819_123377973_123380121_123380221_123380459_123380568_123382121_123382206_123383002_123383166_123384380_123384575_123385486_123385626_123386433_123386613_123386878_123387049_123387727_123387912_123388676_123388804_123391520_123391676_123393665_123393819_123395956_123396083_123396976_123397073_123398237_123398343_123400124_123400287_123401076_123401155_123402205_123402335_123403564_123403842_123404437_123404593_123404738_123404833_123404910_123405039_123405598_123405695_123405839_123405960_123406554_123406662_123406762_123406876_123407627_123407795_123429994_123430088_123433588_123433667_123438534_123438625_123448096_123448159_123558258
transcript_93821.nic	chr4	-	1388	11	NIC	ENSMUSG00000028649.22	novel	17268	94	NA	NA	-79	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	10.7093417164642	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGAAGCATATTTCTGG	7006	False	NA	NA	False	AAAAAG	-33	NA	123558624	123405598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_123405695_123405839_123405960_123406554_123406662_123406762_123406876_123407627_123407795_123429994_123430088_123433588_123433667_123436284_123436381_123438534_123438625_123448096_123448159_123558258
transcript_93823.nic	chr4	-	1292	10	ISM	ENSMUSG00000028649.22	ENSMUST00000147030.2	5706	39	-79	55457	-79	0	5prime_fragment	FALSE	canonical	3	21	junction_7	10.1007272687676	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGAAGCATATTTCTGG	7006	False	NA	NA	False	AAAAAG	-33	NA	123558624	123405598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_123405695_123405839_123405960_123406554_123406662_123406762_123406876_123407627_123407795_123429994_123430088_123433588_123433667_123438534_123438625_123448096_123448159_123558258
transcript_93824.nic	chr4	-	1865	3	ISM	ENSMUSG00000028649.22	ENSMUST00000147030.2	5706	39	-79	87046	-79	-4515	5prime_fragment	FALSE	canonical	3	50	junction_1	1	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAACAAACAGAATTGCC	7006	False	NA	NA	False	NA	NA	NA	123558624	123437187	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_123438625_123448096_123448159_123558258
transcript_93825.known	chr4	-	1083	10	FSM	ENSMUSG00000028649.22	ENSMUST00000238866.2	1083	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	17.3076733143296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGAAGCATATTTCTGG	6439	False	NA	NA	False	AAAAAG	-33	NA	123507536	123405598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_123405695_123405839_123405960_123406554_123406662_123406762_123406876_123407627_123407795_123429994_123430088_123433588_123433667_123438534_123438625_123448096_123448159_123507379
transcript_93826.nnic	chr4	+	481	3	NNC	ENSMUSG00000087307.2	novel	678	3	NA	NA	-2743	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	3	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAGCCGCCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	123556930	123562520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_123557174_123561406_123561541_123562416
transcript_93827.nnic	chr4	+	676	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2743	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	12.5	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACCATTGTGGTTCAC	NA	False	NA	9	True	NA	NA	NA	123556930	123565010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_123557174_123561406_123561541_123564711
transcript_93830.known	chr4	-	599	3	FSM	ENSMUSG00000028648.14	ENSMUST00000106206.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	1021.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1848	False	NA	-25	True	AATAAA	-17	NA	123611979	123606502	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_123606720_123609656_123609875_123611815
transcript_93831.known	chr4	-	350	3	FSM	ENSMUSG00000028648.14	ENSMUST00000137312.2	350	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	1039.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCCCTCCACCTCACCAT	1853	False	NA	NA	False	AAGAAA	-32	NA	123611974	123606661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_123606720_123609656_123609875_123611900
transcript_93833.known	chr4	-	3052	5	FSM	ENSMUSG00000023075.10	ENSMUST00000102636.4	3052	5	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_3	40.3198152277512	552	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATGCATTGGAATGTG	NA	False	NA	NA	False	AATAAA	-15	NA	123644138	123628351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_123630658_123631801_123631874_123632935_123633071_123637225_123637367_123643740
transcript_93836.known	chr4	+	1683	2	FSM	ENSMUSG00000043333.13	ENSMUST00000124290.2	1683	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAATGTTCAT	NA	False	NA	NA	False	NA	NA	NA	123681666	123705291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_123681765_123703706
transcript_93841.known	chr4	+	2593	7	FSM	ENSMUSG00000028646.17	ENSMUST00000030399.7	2593	7	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_1	23.3553467587664	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGTTGTGTGATGTGT	NA	False	NA	20	True	AATAAA	-20	NA	123811238	123830790	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_123811561_123813641_123813846_123814743_123814944_123817752_123817868_123818539_123818683_123823624_123823774_123829330
transcript_93842.known	chr4	+	2950	7	FSM	ENSMUSG00000028646.17	ENSMUST00000155757.8	2950	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	186.947779399014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGTTTGTTGTGTGAT	NA	False	NA	16	True	AATAAA	-16	NA	123811266	123830786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_123811561_123813641_123814235_123814743_123814944_123817752_123817868_123818539_123818683_123823624_123823774_123829330
transcript_93845.known	chr4	+	1685	5	FSM	ENSMUSG00000028647.14	ENSMUST00000030400.14	1685	5	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	22.6163657557973	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTCTTTCTTTTTGGT	NA	False	NA	40	True	NA	NA	NA	123798624	123806062	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629_123803760_123804885
transcript_93849.known	chr4	+	1536	4	FSM	ENSMUSG00000028647.14	ENSMUST00000106202.4	1536	4	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_3	15.9652400197707	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTGCCCCATAGCTTG	NA	False	NA	NA	False	AATAAA	-17	NA	123798706	123804869	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629
transcript_93853.known	chr4	-	658	2	FSM	ENSMUSG00000085875.4	ENSMUST00000153814.2	658	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCGGCGTAGCTGGCGCCG	NA	False	NA	NA	False	NA	NA	NA	123811062	123798854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_123799355_123810904
transcript_93854.known	chr4	+	3849	1	FSM	ENSMUSG00000090125.4	ENSMUST00000053491.9	3849	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCCTGTTCTCTTTA	NA	False	NA	28	True	AGTAAA	-34	NA	124550599	124554448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124550600_124554400
transcript_93857.known	chr4	-	1603	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	0	0	0	0	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	418	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCCTTGTGTGTGTGTG	NA	False	NA	NA	False	TATAAA	-16	NA	124587393	124571952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
transcript_9386.known	chr10	+	2442	12	FSM	ENSMUSG00000020111.16	ENSMUST00000165563.8	2442	12	0	0	0	0	multi-exon	FALSE	canonical	2	105	junction_7	32.1836157690049	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTCTGTGTCCTTTCTTT	NA	False	NA	27	True	NA	NA	NA	59538298	59699954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59603959_59604075_59623762_59623846_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000
transcript_93865.known	chr4	+	1664	6	FSM	ENSMUSG00000032643.13	ENSMUST00000038684.6	1664	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGCCCCGTGTATTTG	NA	False	NA	4	True	AATAAA	-15	NA	124594512	124602404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124594645_124599405_124599583_124599676_124599852_124601046_124601217_124601309_124601524_124601608
transcript_93867.known	chr4	+	1820	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	0	0	0	0	multi-exon	FALSE	canonical	3	1027	junction_12	104.342509913266	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTATGAATTTTTTGTT	NA	False	NA	51	True	AATAAA	-38	NA	124608568	124626253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
transcript_93868.known	chr4	+	788	6	FSM	ENSMUSG00000028902.5	ENSMUST00000154712.2	788	6	0	0	0	0	multi-exon	FALSE	canonical	3	1208	junction_5	48.8630739925355	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAGAAAAAAAAAGAA	NA	False	NA	NA	False	AAGAAA	-33	NA	124608675	124612520	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120
transcript_93869.known	chr4	+	3809	24	FSM	ENSMUSG00000028894.19	ENSMUST00000094782.10	3809	24	0	0	0	0	multi-exon	FALSE	non_canonical	1	6	junction_2	64.214933278441	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGGTTCTCTCTTTTTTT	NA	False	NA	22	True	AATATA	-30	NA	124635642	124695304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124635710_124636256_124636384_124636728_124636824_124637428_124637527_124637666_124637697_124639864_124639976_124645104_124645486_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
transcript_93870.nic	chr4	+	3833	24	NIC	ENSMUSG00000028894.19	novel	3809	24	NA	NA	-2	0	combination_of_known_junctions	FALSE	non_canonical	1	2	junction_1	65.4918861047508	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGGTTCTCTCTTTTTTT	NA	False	NA	22	True	AATATA	-30	NA	124635640	124695304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_124635710_124636234_124636384_124636728_124636824_124637428_124637527_124637666_124637697_124639864_124639976_124645104_124645486_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
transcript_93879.known	chr4	+	1634	5	FSM	ENSMUSG00000028889.18	ENSMUST00000102628.11	1634	5	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_1	43.7121264639459	605	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTAAATGGTTTATTTTT	1534	False	NA	43	True	ATTAAA	-18	NA	124744471	124749035	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124744960_124745485_124745601_124745692_124745813_124747666_124747810_124748267
transcript_93885.known	chr4	-	968	3	FSM	ENSMUSG00000078570.11	ENSMUST00000106190.10	968	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	88.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGACCTTTCTTTTCTG	7576	False	NA	-2	True	ATTAAA	-21	NA	124744602	124743277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_124743756_124744024_124744227_124744314
transcript_93886.known	chr4	-	761	3	FSM	ENSMUSG00000078570.11	ENSMUST00000125776.8	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	71	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGACCTTTCTTTTCT	7724	False	NA	-3	True	ATTAAA	-20	NA	124744454	124743278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_124743756_124744024_124744227_124744372
transcript_93887.known	chr4	-	1223	3	FSM	ENSMUSG00000078570.11	ENSMUST00000185036.2	1223	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	68	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGACTGACCTTTCTT	7189	False	NA	-7	True	ATTAAA	-16	NA	124744989	124743282	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_124743756_124744024_124744227_124744441
transcript_93889.known	chr4	+	781	2	FSM	ENSMUSG00000028890.14	ENSMUST00000147452.2	781	2	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAATTCATGTTTATA	352	False	NA	4	True	AATAAA	-15	NA	124696374	124699171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124696437_124698452
transcript_93894.nnic	chr4	-	1537	11	NNC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	207	junction_10	436.918573649599	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830709	124812257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381_124830522_124830609
transcript_93898.known	chr4	-	1626	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830710	124812257	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
transcript_93914.nic	chr4	+	2861	6	NIC	ENSMUSG00000044730.18	novel	2911	5	NA	NA	-12	0	intron_retention	FALSE	non_canonical	3	26	junction_1	9.3936148526539	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGACATTTGGTAAATATA	NA	False	NA	5	True	AATAAA	-19	NA	124830828	124838449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_124830884_124830971_124831127_124832232_124832511_124834158_124834339_124836145_124836265_124836375
transcript_93921.known	chr4	-	645	5	FSM	ENSMUSG00000028873.17	ENSMUST00000125801.8	645	5	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_1	172.905140178076	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGGGCTTCTCTGGCA	NA	False	NA	NA	False	AATACA	-42	NA	124830574	124817416	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
transcript_93924.known	chr4	+	4749	4	FSM	ENSMUSG00000044730.18	ENSMUST00000233434.2	4749	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	10.7806410858642	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGACATTTGGTAAATAT	NA	False	NA	4	True	AATAAA	-18	NA	124830857	124838448	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124830884_124830971_124831127_124832232_124832511_124834158
transcript_93925.known	chr4	-	3358	4	FSM	ENSMUSG00000028873.17	ENSMUST00000147074.2	3358	4	0	0	0	0	multi-exon	FALSE	canonical	3	1608	junction_2	138.468608556436	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAGGAAGAAGAAGAAGA	NA	False	NA	-13	True	NA	NA	NA	124830635	124817596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_124820531_124824864_124824906_124830147_124830277_124830381
transcript_93926.known	chr4	+	1203	3	FSM	ENSMUSG00000044730.18	ENSMUST00000233530.2	1203	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	13	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTCTGTTTTCTGCTTTT	NA	False	NA	NA	False	AAGAAA	-26	NA	124830850	124833247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124830884_124830971_124831127_124832232
transcript_93928.known	chr4	-	712	8	FSM	ENSMUSG00000028873.17	ENSMUST00000135571.8	712	8	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_5	70.1211779125018	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTCTGAGTAGCACAGCC	NA	False	NA	NA	False	NA	NA	NA	124830200	124813348	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147
transcript_93929.known	chr4	+	2911	5	FSM	ENSMUSG00000044730.18	ENSMUST00000094769.13	2911	5	0	0	0	0	multi-exon	FALSE	non_canonical	3	27	junction_4	9.02773504263389	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGACATTTGGTAAATATA	NA	False	NA	5	True	AATAAA	-19	NA	124830866	124838449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124831127_124832232_124832511_124834158_124834339_124836145_124836265_124836375
transcript_93934.known	chr4	+	2366	16	FSM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_4	51.4673575083168	483	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGGAACTGTGTTCGCTT	NA	False	NA	24	True	ATTAAA	-18	NA	124923784	124949169	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
transcript_9394.known	chr10	+	1732	5	FSM	ENSMUSG00000020111.16	ENSMUST00000165405.2	1732	5	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	28.4725745235657	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAACAAACAA	NA	False	NA	NA	False	GATAAA	-5	NA	59538479	59587527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325
transcript_93964.known	chr4	+	2345	4	FSM	ENSMUSG00000050213.7	ENSMUST00000052183.7	2345	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	6.84754619472471	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGAGGGTATTACTTTT	NA	False	NA	14	True	AATAAA	-20	NA	124960464	124967835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124960746_124961882_124961986_124964899_124965484_124966458
transcript_93965.nic	chr4	+	2420	4	NIC	ENSMUSG00000050213.7	novel	2345	4	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	40.7785346584314	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGAGGGTATTACTTTT	NA	False	NA	14	True	AATAAA	-20	NA	124960472	124967835	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_124960746_124961799_124961986_124964899_124965484_124966458
transcript_93970.known	chr4	+	1054	8	FSM	ENSMUSG00000028863.14	ENSMUST00000184205.8	1054	8	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	102.612805025016	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCATTCTCTTGTTT	NA	False	NA	-10	True	NA	NA	NA	124978956	125003507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125001444_125001503_125002115_125002150_125003091
transcript_93974.known	chr4	+	4550	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_5	63.7427555796648	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACTGCTGATACTGAAAT	NA	False	NA	NA	False	NA	NA	NA	124978926	125007031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
transcript_93976.nic	chr4	+	1055	6	NIC	ENSMUSG00000028863.14	novel	872	6	NA	NA	-26	379	combination_of_known_junctions	FALSE	canonical	3	30	junction_5	120.208818312135	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCATCAACAGATTCTT	NA	False	NA	14	True	ATTAAA	-20	NA	124978900	124997675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_124997222
transcript_93977.known	chr4	+	872	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCAGCTGCCTCTTT	NA	False	NA	40	True	ACTAAA	-16	NA	124978943	125003682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
transcript_93984.known	chr4	+	504	3	FSM	ENSMUSG00000028863.14	ENSMUST00000124154.2	504	3	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_2	8	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTGTTTGTCAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	124978957	124983953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_124979060_124979937_124980054_124983667
transcript_93985.known	chr4	-	2755	6	FSM	ENSMUSG00000042677.8	ENSMUST00000036188.8	2755	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_5	0.748331477354788	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGCCAGTCGTTTTGA	NA	False	NA	NA	False	AAGAAA	-7	NA	125021633	125012215	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_125013938_125014118_125014226_125014664_125014900_125016046_125016187_125020398_125020876_125021559
transcript_9399.known	chr10	+	3041	9	FSM	ENSMUSG00000020109.14	ENSMUST00000147914.8	3041	9	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_8	46.5154544210846	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGGTCTGCATTGAAC	NA	False	NA	37	True	NA	NA	NA	59715377	59735124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732270_59733312
transcript_940.known	chr1	-	2290	9	FSM	ENSMUSG00000001143.14	ENSMUST00000115011.8	2290	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	79.4618619213016	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTCTGGCTCAGTGGCC	NA	False	NA	-3	True	CATAAA	-21	NA	36484352	36462266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36468503_36468537_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_94000.known	chr4	+	937	8	FSM	ENSMUSG00000028861.14	ENSMUST00000030675.8	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	1282	junction_7	51.9186962510439	599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAATGATGGAAGATGG	NA	False	NA	27	True	AATAAA	-12	NA	125940717	125949325	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753_125948946_125949172
transcript_94015.known	chr4	+	1473	11	FSM	ENSMUSG00000042616.9	ENSMUST00000143712.3	1473	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.32148056909416	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTTCCCCATTATTCTC	2402	False	NA	7	True	AATATA	-17	NA	125952396	125982457	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_125952586_125958742_125958773_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
transcript_94016.known	chr4	+	5013	10	FSM	ENSMUSG00000042616.9	ENSMUST00000035497.5	5013	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	4.26296135405575	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTGAGTCGGTGAT	2363	False	NA	NA	False	AATAAA	-15	NA	125952357	125985988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_125952586_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
transcript_94018.known	chr4	-	393	1	FSM	ENSMUSG00000079942.6	ENSMUST00000116058.3	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACCCCGGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	125964052	125963659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_125963700_125964100
transcript_94019.known	chr4	+	943	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTGCCTGATGCCCTG	NA	False	NA	30	True	CATAAA	-21	NA	125990415	125992377	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_125990603_125991621
transcript_94020.known	chr4	+	352	2	FSM	ENSMUSG00000050188.9	ENSMUST00000151831.2	352	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGCAGCAGCTGCAGATC	NA	False	NA	NA	False	NA	NA	NA	125990452	125991925	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_125990501_125991621
transcript_94024.nnic	chr4	+	3217	12	NNC	ENSMUSG00000042608.16	novel	3860	13	NA	NA	-17	-100	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	104.66830726373	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGAAAAAGTCACAAAAAAG	NA	False	NA	-79	True	NA	NA	NA	125997732	126034721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_125997940_126017508_126017629_126018875_126018962_126019467_126019612_126022611_126022840_126023490_126023544_126028804_126028921_126030562_126030708_126030869_126030990_126031553_126031639_126032602_126033732_126033937
transcript_94025.nnic	chr4	+	3308	12	NNC	ENSMUSG00000042608.16	novel	3860	13	NA	NA	-17	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	104.66830726373	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCCACCATGGTCTGTAG	NA	False	NA	12	True	AATAAA	-13	NA	125997732	126034812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_125997940_126017508_126017629_126018875_126018962_126019467_126019612_126022611_126022840_126023490_126023544_126028804_126028921_126030562_126030708_126030869_126030990_126031553_126031639_126032602_126033732_126033937
transcript_9403.known	chr10	+	2238	9	FSM	ENSMUSG00000020109.14	ENSMUST00000020309.7	2238	9	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	81.8458917722814	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGCGCACCAAGGACTC	NA	False	NA	NA	False	NA	NA	NA	59715447	59734343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732318_59733312
transcript_94031.known	chr4	+	3492	11	FSM	ENSMUSG00000042608.16	ENSMUST00000094761.11	3492	11	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	16.9944108459223	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTGTAGCCTGCCTCTG	NA	False	NA	22	True	AATAAA	-23	NA	125997764	126034822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_125997940_126017508_126017629_126018875_126018962_126019467_126019612_126022611_126022840_126023490_126023544_126028804_126028921_126030562_126030708_126030869_126030990_126031553_126031639_126032602
transcript_94041.known	chr4	+	1364	3	FSM	ENSMUSG00000050212.5	ENSMUST00000106152.3	1364	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	47.5	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTCTCACTGGTTAC	6601	False	NA	21	True	AATGAA	-16	NA	126041795	126043668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126042425_126042743_126042839_126043028
transcript_94042.known	chr4	+	1689	3	FSM	ENSMUSG00000050212.5	ENSMUST00000052876.3	1689	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	143	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGTCTCTCACTGGTTA	6342	False	NA	20	True	AATGAA	-15	NA	126041536	126043667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126042425_126042676_126042839_126043028
transcript_94046.known	chr4	+	1144	2	FSM	ENSMUSG00000050212.5	ENSMUST00000106150.3	1144	2	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	7130	False	NA	11	True	AATGAA	-6	NA	126042324	126043658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126042839_126043028
transcript_94047.known	chr4	-	2384	16	FSM	ENSMUSG00000073758.11	ENSMUST00000097891.4	2384	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	4.1505019776729	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCAGTCTGGTCCTTGTGG	1138	False	NA	0	True	AGTAAA	-21	NA	126057284	126044394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126055968_126056060_126056245_126056365_126056594_126056659_126056758_126056917_126057017
transcript_94051.known	chr4	-	1859	12	FSM	ENSMUSG00000073758.11	ENSMUST00000094760.9	1859	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	4.41260403618604	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCAGTCTGGTCCTTGTGG	2003	False	NA	0	True	AGTAAA	-21	NA	126056419	126044394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126056245
transcript_94066.nic	chr4	-	4475	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	517	junction_11	115.160039556887	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6665	False	NA	-3	True	AATAAA	-28	NA	126096562	126057874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
transcript_94068.nic	chr4	-	3886	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_7	237.221554913761	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6741	False	NA	-3	True	AATAAA	-28	NA	126096486	126057874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126072167_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
transcript_9407.known	chr10	+	1495	8	FSM	ENSMUSG00000020109.14	ENSMUST00000142819.8	1495	8	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_6	22.8937207325413	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAAGCCTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	59715439	59732597	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171
transcript_94073.nic	chr4	-	3698	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-9	682	combination_of_known_junctions	FALSE	canonical	3	517	junction_11	115.160039556887	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTTGGGACCAAACTGC	6665	False	NA	NA	False	AATAAA	-17	NA	126096562	126058651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
transcript_94082.known	chr4	-	4378	11	FSM	ENSMUSG00000043962.17	ENSMUST00000080919.12	4378	11	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_10	137.634443363571	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6674	False	NA	-3	True	AATAAA	-28	NA	126096553	126057874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
transcript_9410.known	chr10	-	1755	3	FSM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_1	4.5	1018	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTCTCATCGGCGCCA	NA	False	NA	-4	True	AATAAA	-17	NA	59787656	59785490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_59786852_59787138_59787395_59787518
transcript_94110.nic	chr4	-	2480	9	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-16	1113	combination_of_known_junctions	FALSE	canonical	3	517	junction_8	121.539088362551	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAGAGAAAACCCACAAAG	6748	False	NA	-16	True	NA	NA	NA	126096479	126065522	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
transcript_94129.known	chr4	-	2744	7	FSM	ENSMUSG00000043962.17	ENSMUST00000106142.8	2744	7	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_6	159.124078071869	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTTATTGACCATCATT	6845	False	NA	NA	False	AATAAA	-23	NA	126096382	126066635	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
transcript_9413.known	chr10	+	1450	11	FSM	ENSMUSG00000044475.15	ENSMUST00000050516.14	1450	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	12.5797456254091	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838660	59935808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
transcript_94134.nic	chr4	-	2296	7	NIC	ENSMUSG00000043962.17	novel	2744	7	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	517	junction_6	126.229178701105	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATAAGAAAAGCCCAG	6665	False	NA	NA	False	ACTAAA	-33	NA	126096562	126069158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
transcript_9414.known	chr10	+	1473	11	FSM	ENSMUSG00000044475.15	ENSMUST00000164083.4	1473	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	64.3808201252516	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGTGGTCTGTGCACG	NA	False	NA	28	True	AATAAA	-18	NA	59839148	59935810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59839239_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
transcript_94144.nic	chr4	-	2148	6	ISM	ENSMUSG00000043962.17	ENSMUST00000106142.8	2744	7	-120	2523	-39	0	5prime_fragment	FALSE	canonical	3	431	junction_5	165.904791974192	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATAAGAAAAGCCCAG	6725	False	NA	NA	False	ACTAAA	-33	NA	126096502	126069158	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
transcript_94149.nic	chr4	-	2044	6	NIC	ENSMUSG00000043962.17	novel	2744	7	NA	NA	-39	-928	combination_of_known_junctions	FALSE	canonical	3	517	junction_5	120.577609861864	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCAGGAGTTCCGTTCCA	6725	False	NA	NA	False	NA	NA	NA	126096502	126070086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
transcript_9417.nnic	chr10	+	1381	10	NIC	ENSMUSG00000044475.15	novel	1450	11	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	69.3265666213622	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838631	59935808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_59838730_59840616_59840750_59843548_59843649_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
transcript_94178.known	chr4	-	2238	3	FSM	ENSMUSG00000043962.17	ENSMUST00000151728.2	2238	3	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_2	228	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGTATCCTAAATAACTT	6822	False	NA	NA	False	AGTAAA	-12	NA	126096405	126072566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126074608_126080227_126080382_126096362
transcript_94184.known	chr4	-	3249	18	FSM	ENSMUSG00000028849.18	ENSMUST00000122129.8	3249	18	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_13	57.8802606030247	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150070	126125959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130853_126130948_126131072_126132314_126132426_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
transcript_94185.nnic	chr4	-	3328	18	NIC	ENSMUSG00000028849.18	novel	3249	18	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	52	junction_13	63.2753635019	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150158	126125959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130853_126130948_126131072_126132314_126132426_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
transcript_94187.nnic	chr4	-	3159	17	NNC	ENSMUSG00000028849.18	novel	3351	17	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	75.6410107018673	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150158	126125959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130828_126130990_126131072_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
transcript_94188.known	chr4	-	3195	17	FSM	ENSMUSG00000028849.18	ENSMUST00000106132.3	3195	17	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_12	60.9301598143317	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150136	126125959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126130853_126130948_126131072_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
transcript_94190.known	chr4	-	3351	17	FSM	ENSMUSG00000028849.18	ENSMUST00000061143.15	3351	17	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_12	56.4079726191254	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150076	126125959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126132314_126132426_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
transcript_94191.nnic	chr4	-	3424	17	NIC	ENSMUSG00000028849.18	novel	3351	17	NA	NA	-22	0	intron_retention	FALSE	canonical	3	52	junction_12	62.4189474438652	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150158	126125959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126132314_126132426_126133824_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
transcript_94198.nic	chr4	-	3322	16	NIC	ENSMUSG00000028849.18	novel	3351	17	NA	NA	-22	0	intron_retention	FALSE	canonical	3	98	junction_11	48.1315789153949	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	0	True	AATAAA	-21	NA	126150158	126125959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559_126128889_126130425_126130566_126130688_126131072_126133815_126133931_126134506_126134671_126135573_126135643_126135809_126136161_126149809
transcript_942.nic	chr1	-	1104	8	NIC	ENSMUSG00000001143.14	novel	705	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	59.6068753738756	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGAGAGTTTCTACTCCC	NA	False	NA	-1	True	AATAAA	-16	NA	36484352	36458951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_36459117_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_9420.known	chr10	+	1230	6	FSM	ENSMUSG00000044475.15	ENSMUST00000219778.2	1230	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	94.044670237074	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAATCTGTATTTTAT	NA	False	NA	NA	False	ATTAAA	-35	NA	59838626	59862161	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59861544
transcript_94213.known	chr4	+	1336	5	FSM	ENSMUSG00000028847.9	ENSMUST00000030660.9	1336	5	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_3	21.2882009573378	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGTTTTCCTTCT	7625	False	NA	45	True	AATAAA	-25	NA	126156117	126169676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126156331_126166470_126166569_126166767_126166868_126167682_126167866_126168934
transcript_94214.nnic	chr4	+	1228	5	NNC	ENSMUSG00000028847.9	novel	1336	5	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	162.187391618461	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGTTTTCCTTCT	7659	False	NA	45	True	AATAAA	-25	NA	126156151	126169676	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_126156257_126166470_126166569_126166767_126166868_126167682_126167866_126168934
transcript_94220.known	chr4	-	1672	6	FSM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_3	41.9218320210365	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCCTGTTCCTGTCTC	7076	False	NA	NA	False	AATAAA	-20	NA	126215496	126209839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126210659_126211095_126211197_126211512_126211698_126211776_126211985_126212191_126212289_126215234
transcript_94227.nic	chr4	-	1973	5	NIC	ENSMUSG00000042558.17	novel	1672	6	NA	NA	10	0	intron_retention	FALSE	canonical	3	286	junction_2	42.9418211071678	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCATGTCCTGTTCCT	7086	False	NA	NA	False	AATAAA	-15	NA	126215486	126209844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_126210659_126211095_126211698_126211776_126211985_126212191_126212289_126215234
transcript_94228.known	chr4	-	1826	4	FSM	ENSMUSG00000042558.17	ENSMUST00000128188.8	1826	4	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_1	27.3901847788988	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCATGTCCTGTTCCT	7312	False	NA	NA	False	AATAAA	-15	NA	126215260	126209844	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126210659_126211095_126211985_126212191_126212289_126215234
transcript_9423.known	chr10	-	1379	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGCTGTGCGTATCCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	59838933	59823729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
transcript_94234.known	chr4	-	1542	11	FSM	ENSMUSG00000028845.16	ENSMUST00000102616.8	1542	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	4.52658811910251	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGCTCTTTTCTGCTAC	3091	False	NA	NA	False	AATAAA	-15	NA	126219481	126215913	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022_126218229_126218386_126218513_126218595_126218802_126218926_126218997_126219437
transcript_94235.known	chr4	-	15595	19	FSM	ENSMUSG00000028842.16	ENSMUST00000069097.13	15595	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	10.4927958825138	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTGTCTTCAGTATTTC	2364	False	NA	2	True	AATAAA	-15	NA	126323349	126226524	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126239376_126240423_126240624_126241560_126241663_126243978_126244114_126244647_126244843_126247473_126247565_126248798_126248959_126257438_126257624_126261440_126261575_126262276_126262400_126264055_126264176_126265260_126265409_126265531_126265620_126270699_126270835_126296957_126297095_126297997_126298207_126301534_126301656_126311020_126311193_126323060
transcript_94241.known	chr4	-	7065	19	FSM	ENSMUSG00000041530.18	ENSMUST00000239428.2	7065	19	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	3.48364786813131	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCAGTCTGTTTTTTTTTT	NA	False	NA	-20	True	TATAAA	-26	NA	126362214	126328804	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126333405_126333634_126333835_126334156_126334259_126334969_126335105_126335681_126335877_126336608_126336700_126336873_126337034_126342559_126342745_126347350_126347485_126347618_126347742_126348097_126348218_126352901_126353050_126353572_126353661_126353793_126353929_126354159_126354297_126354698_126354881_126355477_126355599_126357464_126357649_126362189
transcript_9425.known	chr10	-	1852	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGAGTTGAAACTATT	NA	False	NA	2	True	AATAAA	-28	NA	59838957	59823230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
transcript_94253.nic	chr4	-	537	3	ISM	ENSMUSG00000041530.18	ENSMUST00000097888.10	7227	19	-91	26719	-91	-2416	5prime_fragment	FALSE	canonical	3	15	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAATATTTACACGGTCA	NA	False	NA	NA	False	NA	NA	NA	126362467	126355523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_126355599_126357464_126357649_126362189
transcript_94261.known	chr4	+	5027	26	FSM	ENSMUSG00000042489.16	ENSMUST00000048391.15	5027	26	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	26.925794324402	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTCCAGCTCTAGTG	NA	False	NA	30	True	AATAAA	-23	NA	126450727	126487696	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467102_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444_126486595_126486835
transcript_94262.nic	chr4	+	2897	15	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	1	26	junction_4	14.8839044690867	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCTGAGGAGAAATGTCA	NA	False	NA	NA	False	NA	NA	NA	126450742	126471541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405
transcript_94264.known	chr4	+	608	3	FSM	ENSMUSG00000042489.16	ENSMUST00000147675.2	608	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	24	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAGAAAGAGGAGAGAAC	NA	False	NA	NA	False	NA	NA	NA	126450787	126454079	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126450919_126453000_126453110_126453711
transcript_94265.known	chr4	+	2855	2	FSM	ENSMUSG00000073755.5	ENSMUST00000164362.2	2855	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCCAGGATATGTTTTT	7798	False	NA	9	True	AATAAA	-19	NA	126503646	126508164	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126503806_126505468
transcript_94269.known	chr4	+	859	6	FSM	ENSMUSG00000028837.9	ENSMUST00000030642.3	859	6	0	0	0	0	multi-exon	FALSE	canonical	3	3349	junction_3	129.102439945959	2440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	5380	False	NA	19	True	AATAAA	-21	NA	126571422	126603507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603271
transcript_94272.known	chr4	+	708	5	FSM	ENSMUSG00000028837.9	ENSMUST00000150372.2	708	5	0	0	0	0	multi-exon	FALSE	canonical	3	3349	junction_3	124.252515065088	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTTATTCTCTCATGGG	5454	False	NA	NA	False	NA	NA	NA	126571496	126601555	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346
transcript_94278.known	chr4	-	3681	7	FSM	ENSMUSG00000028833.14	ENSMUST00000030637.14	3681	7	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_6	31.1216252074913	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTCTGCCTTGCAC	NA	False	NA	-1	True	NA	NA	NA	126647202	126637542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733_126645875_126646763
transcript_94279.known	chr4	-	2375	7	FSM	ENSMUSG00000028833.14	ENSMUST00000127079.2	2375	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	61.3969326052477	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCCAGCTTTCTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	126647231	126638523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733_126645875_126647117
transcript_9428.known	chr10	-	566	3	FSM	ENSMUSG00000020107.11	ENSMUST00000182912.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	171	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGGACAGCCAGGGCTA	NA	False	NA	NA	False	NA	NA	NA	59838908	59824300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_59824661_59826654_59826730_59838777
transcript_94282.nic	chr4	+	4298	21	ISM	ENSMUSG00000028830.15	ENSMUST00000102608.10	4073	24	-32	15734	-21	0	5prime_fragment	FALSE	canonical	2	17	junction_1	12.2363188909083	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTATGAGGTTGTG	NA	False	NA	18	True	ATTAAA	-18	NA	126647315	126748129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_126647456_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
transcript_94283.nic	chr4	+	4382	21	NIC	ENSMUSG00000028830.15	novel	4073	24	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	14.5995719115322	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTATGAGGTTGTG	NA	False	NA	18	True	ATTAAA	-18	NA	126647336	126748129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_126647561_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
transcript_94284.known	chr4	+	4384	21	FSM	ENSMUSG00000028830.15	ENSMUST00000047431.11	4384	21	0	0	0	0	multi-exon	FALSE	canonical	2	36	junction_1	9.66643677887566	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTATGAGGTTGTG	NA	False	NA	18	True	ATTAAA	-18	NA	126647562	126748129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126647789_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
transcript_94291.nic	chr4	+	2300	13	ISM	ENSMUSG00000028830.15	ENSMUST00000047431.11	4384	21	13	14589	-11	0	5prime_fragment	FALSE	canonical	3	36	junction_1	10.8176168047003	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCGTCTTGCTGTGGGCAT	NA	False	NA	NA	False	NA	NA	NA	126647575	126733540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_126647789_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391
transcript_94292.known	chr4	-	7102	30	FSM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_15	43.6375461501576	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGAGTTCTTTTTCTTT	NA	False	NA	-10	True	AATAAA	-20	NA	126861928	126755731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126758111_126759289_126759420_126762509_126762759_126763975_126764088_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794542_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861608
transcript_94306.nic	chr4	-	3302	18	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	-120	36370	-120	6973	5prime_fragment	FALSE	canonical	3	101	junction_3	46.9461887343179	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCCAGACAGGTACGTT	NA	False	NA	NA	False	ACTAAA	-34	NA	126862048	126792101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_126792234_126793724_126793763_126794397_126794542_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861608
transcript_94309.nic	chr4	-	1706	7	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	-120	53009	-120	0	5prime_fragment	FALSE	canonical	3	222	junction_3	34.4141443789226	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACATT	NA	False	NA	NA	False	NA	NA	NA	126862048	126808740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861608
transcript_9431.known	chr10	+	5238	11	FSM	ENSMUSG00000058297.17	ENSMUST00000121820.9	5238	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.37045990927054	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTGAGAAACCTTTGCT	9231	False	NA	4	True	AATAAA	-17	NA	59942040	59971020	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_59942479_59957053_59957063_59957299_59957346_59957505_59957621_59959631_59959747_59961531_59961647_59961975_59962093_59962655_59962875_59965502_59965566_59966905_59967044_59967157
transcript_94312.nic	chr4	-	1138	5	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	-120	61228	-120	-332	5prime_fragment	FALSE	canonical	3	222	junction_1	26.3818119165458	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTAGAATTAAAGAAGAAC	NA	False	NA	NA	False	AGTAAA	-42	NA	126862048	126816959	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_126817028_126817361_126817424_126819294_126819817_126842226_126842273_126861608
transcript_94313.nic	chr4	-	904	3	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	-120	63667	-120	-13	5prime_fragment	FALSE	canonical	3	258	junction_2	18	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAGAAAAATAGAGACCTAA	NA	False	NA	NA	False	AAAACA	-23	NA	126862048	126819398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_126819817_126842226_126842273_126861608
transcript_94314.nic	chr4	-	793	3	ISM	ENSMUSG00000042446.17	ENSMUST00000106108.9	7102	30	-120	63778	-120	-124	5prime_fragment	FALSE	canonical	3	258	junction_2	18	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGTTAAAAAAAGACTTTC	NA	False	NA	NA	False	AATACA	-10	NA	126862048	126819509	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_126819817_126842226_126842273_126861608
transcript_94318.nic	chr4	+	2308	12	NIC	ENSMUSG00000028820.14	novel	925	10	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_9	288.88503246702	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126915079	126930806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126929600_126929648_126930355_126930443_126930724
transcript_94326.known	chr4	+	3465	10	FSM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_1	123.17016233199	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTTCTTCCCAGTGT	NA	False	NA	26	True	AATAAA	-22	NA	126915116	126925029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126923619
transcript_9433.known	chr10	-	6108	4	FSM	ENSMUSG00000057337.14	ENSMUST00000135158.9	6108	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTCTGTAGTGGTTAT	NA	False	NA	NA	False	AATGAA	-7	NA	60055082	60017353	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_60022706_60023894_60024141_60029914_60030068_60054725
transcript_94345.known	chr4	-	2982	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106099.8	2982	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	144.172515708488	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAACTTGCAACTTTGAG	NA	False	NA	NA	False	AATGAA	-11	NA	126954917	126941434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126943406_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
transcript_94349.known	chr4	-	3852	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAGAGGCCTAACT	NA	False	NA	NA	False	ACTAAA	-36	NA	126954945	126940886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
transcript_9435.known	chr10	+	2657	15	FSM	ENSMUSG00000004207.15	ENSMUST00000179238.8	2657	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	365.052281690372	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGCCTTGTGTCTCT	6990	False	NA	NA	False	AATAAA	-16	NA	60113449	60138376	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60133316_60133326_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
transcript_94367.known	chr4	-	621	4	FSM	ENSMUSG00000043872.15	ENSMUST00000136186.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_3	174.76269624837	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAACTTTTGTAGCCAA	NA	False	NA	NA	False	NA	NA	NA	126954879	126948119	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_126948176_126952585_126952825_126953302_126953453_126954703
transcript_94371.known	chr4	+	4210	15	FSM	ENSMUSG00000042408.14	ENSMUST00000046751.13	4210	15	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	19.4952898550038	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCCTTTATGTTGGTGA	2744	False	NA	17	True	NA	NA	NA	126971175	127018163	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126971394_126972200_126972340_126980767_126980835_126982121_126982348_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_126999066_126999240_127000368_127000517_127002340_127002509_127003717_127003756_127014220_127014366_127016141
transcript_94374.nic	chr4	+	5277	14	NIC	ENSMUSG00000042408.14	novel	4210	15	NA	NA	-258	0	intron_retention	TRUE	canonical	3	69	junction_3	8.41103811251486	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTTTATGTTGGTGATT	2486	False	NA	19	True	NA	NA	NA	126970917	127018165	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_126972340_126980767_126980835_126982121_126982348_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_126999066_126999240_127000368_127000517_127002340_127002509_127003717_127003756_127014220_127014366_127016141
transcript_94379.known	chr4	+	404	3	FSM	ENSMUSG00000042408.14	ENSMUST00000129926.2	404	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAAAACTGCTTCTTAAG	3652	False	NA	NA	False	NA	NA	NA	126972083	126982202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_126972340_126980767_126980835_126982121
transcript_94380.nnic	chr4	+	1066	3	NNC	ENSMUSG00000070737.11	novel	1120	3	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	45	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019799	127023437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_127019894_127021611_127021793_127022646
transcript_94381.known	chr4	+	1120	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	3.5	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019838	127023437	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_127019987_127021611_127021793_127022646
transcript_94383.known	chr4	+	3884	12	FSM	ENSMUSG00000042388.15	ENSMUST00000046659.14	3884	12	0	0	0	0	multi-exon	TRUE	canonical	3	99	junction_1	32.2174943493246	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAATCTCTCCAGAAGAG	NA	False	NA	17	True	AATAAA	-20	NA	127062996	127130815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_127063159_127086867_127086951_127088354_127089507_127093465_127093672_127094056_127094130_127108098_127108313_127108475_127108790_127109090_127109177_127127327_127127813_127128760_127128853_127129177_127129322_127129942
transcript_94386.known	chr4	+	1022	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	0	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGGAGTCCTGCTCTCT	NA	False	NA	29	True	ATTAAA	-18	NA	127137576	127141602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_127137692_127140695
transcript_94388.known	chr4	-	1685	2	FSM	ENSMUSG00000050234.8	ENSMUST00000053753.8	1685	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGTGTGCACTGATGTT	NA	False	NA	0	True	AATAAA	-17	NA	127207832	127205213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_127206779_127207712
transcript_94396.known	chr4	-	1623	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_1	0	994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127222954	127219027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_127220565_127222868
transcript_94398.known	chr4	-	1880	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_1	0	2161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224637	127219027	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_127220565_127224294
transcript_94399.known	chr4	-	1445	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGTCAGGCGGAGAA	4504	False	NA	-10	True	AATAAA	-17	NA	127247874	127244878	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_127246275_127247825
transcript_944.known	chr1	-	3378	8	FSM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	29.2707278728098	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTCTTGTCAGAAGTG	NA	False	NA	NA	False	AATAGA	-13	NA	36484352	36461145	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_94400.known	chr4	-	1721	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_1	0	365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGAGGGGCCCTTCCTT	404	False	NA	NA	False	AATAAA	-16	NA	127251974	127248601	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_127250167_127251818
transcript_94401.known	chr4	-	5364	8	FSM	ENSMUSG00000061894.16	ENSMUST00000097877.9	5364	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	4.69041575982343	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAACATTTTGTATTT	NA	False	NA	-6	True	NA	NA	NA	128503891	128477339	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_128480638_128481808_128482238_128483244_128483935_128485265_128485351_128485608_128485686_128486127_128486300_128497997_128498506_128503786
transcript_94404.known	chr4	-	3323	2	FSM	ENSMUSG00000061894.16	ENSMUST00000151226.2	3323	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128503827	128495223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_128498506_128503786
transcript_94405.known	chr4	+	3949	15	FSM	ENSMUSG00000028796.18	ENSMUST00000030588.13	3949	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	86.1216806475061	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTTCTCCCAGTGAT	NA	False	NA	20	True	AATAAA	-21	NA	128548494	128646674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_128548610_128598790_128599028_128601729_128601889_128602769_128602848_128603291_128603457_128604850_128604938_128605851_128606153_128616701_128617094_128617340_128617507_128637146_128637350_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
transcript_94410.nic	chr4	+	2457	7	NIC	ENSMUSG00000028796.18	novel	2535	7	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_2	50.0513625078168	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTTCTCCCAGTGAT	NA	False	NA	20	True	AATAAA	-21	NA	128621360	128646674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_128621664_128637146_128637255_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
transcript_94411.known	chr4	+	2535	7	FSM	ENSMUSG00000028796.18	ENSMUST00000106079.10	2535	7	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	20.8865985742054	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTTCTCCCAGTGAT	NA	False	NA	20	True	AATAAA	-21	NA	128621377	128646674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_128621664_128637146_128637350_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
transcript_94412.known	chr4	+	2417	7	FSM	ENSMUSG00000028796.18	ENSMUST00000143632.8	2417	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	86.4542268101065	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTTCTCCCAGTGAT	NA	False	NA	20	True	AATAAA	-21	NA	128621373	128646674	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_128621664_128637148_128637255_128638794_128638925_128639582_128639698_128640893_128641036_128641825_128642078_128645292
transcript_94413.known	chr4	+	3752	5	FSM	ENSMUSG00000041000.9	ENSMUST00000035667.9	3752	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	1.78535710713571	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTACGTTCCATTCAT	NA	False	NA	NA	False	ATTAAA	-17	NA	128777380	128805121	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_128778371_128790612_128790709_128794338_128794596_128796265_128796382_128802828
transcript_94414.known	chr4	-	2063	11	FSM	ENSMUSG00000028789.17	ENSMUST00000030581.10	2063	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	8.67698104181403	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTAAACCCTTCAGTG	NA	False	NA	NA	False	AATAAA	-18	NA	128856232	128825814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251_128841412_128842584_128842751_128843382_128843518_128844392_128844566_128853576_128853751_128855155_128855353_128855876_128855998_128856093
transcript_94421.known	chr4	-	1104	3	FSM	ENSMUSG00000028789.17	ENSMUST00000156739.2	1104	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGGTTTCTCTCCAGATC	NA	False	NA	NA	False	ATTAAA	-20	NA	128856221	128854497	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_128855353_128855876_128855998_128856093
transcript_94429.known	chr4	+	749	7	FSM	ENSMUSG00000028792.15	ENSMUST00000152762.2	749	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	971.101207678971	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGACCTGGTCATGTTT	2998	False	NA	NA	False	NA	NA	NA	128887145	128902022	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_128887230_128892926_128893053_128895288_128895353_128895943_128896055_128896166_128896262_128901505_128901579_128901826
transcript_94433.known	chr4	+	1781	7	FSM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	122.234746833023	1834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2869	False	NA	29	True	AATAAA	-19	NA	128887016	128905322	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
transcript_94438.known	chr4	+	986	6	FSM	ENSMUSG00000028792.15	ENSMUST00000030583.13	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	119.822535443046	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGCACTCATCTATGT	2869	False	NA	22	True	ATTAAA	-26	NA	128887016	128902194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826
transcript_94445.known	chr4	-	1009	2	FSM	ENSMUSG00000085085.3	ENSMUST00000149472.3	1009	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCCTTATGACTTACAC	NA	False	NA	-18	True	AATAAA	-16	NA	128951776	128943889	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_128944703_128951580
transcript_94447.nnic	chr4	+	2442	10	NNC	ENSMUSG00000028793.16	novel	2532	9	NA	NA	-208	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	51.6012728333778	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCATGTCACTGTCCTTGG	NA	False	NA	16	True	AATAAA	-19	NA	128951855	128978319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_128951952_128952249_128952690_128965529_128965736_128967294_128967437_128969362_128969526_128969954_128970070_128972699_128972841_128974134_128974343_128976539_128976672_128977520
transcript_94448.known	chr4	+	1992	9	FSM	ENSMUSG00000028793.16	ENSMUST00000097874.9	1992	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	45.8214946831724	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCATGTCACTGTCCTTGG	NA	False	NA	16	True	AATAAA	-19	NA	128952606	128978319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_128952690_128965529_128965736_128967291_128967437_128969362_128969526_128969954_128970070_128972699_128972841_128974134_128974343_128976539_128976672_128977520
transcript_94451.known	chr4	-	4084	9	FSM	ENSMUSG00000040928.16	ENSMUST00000106059.8	4084	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	66.0793793478722	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1003	False	NA	-5	True	AATAAA	-15	NA	129083520	129041797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129075894_129076124_129076326_129077393_129077511_129083334
transcript_94458.known	chr4	-	1053	7	FSM	ENSMUSG00000040928.16	ENSMUST00000117497.8	1053	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	68.8226383943216	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAACAAGCGGAGCCACC	1121	False	NA	NA	False	NA	NA	NA	129083402	129044824	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129076326_129083334
transcript_94459.known	chr4	-	4426	7	FSM	ENSMUSG00000040928.16	ENSMUST00000106061.9	4426	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	60.2301142840246	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1188	False	NA	-5	True	AATAAA	-15	NA	129083335	129041797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083164
transcript_9446.known	chr10	+	2646	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	3022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGATCTGGCCTTGTGTC	6989	False	NA	NA	False	AATAAA	-13	NA	60113448	60138373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
transcript_94460.nic	chr4	-	4391	7	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	-7	0	intron_retention	FALSE	canonical	3	119	junction_6	30.1482448355898	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1053	False	NA	-5	True	AATAAA	-15	NA	129083470	129041797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083334
transcript_94462.nic	chr4	-	4274	6	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	-7	0	intron_retention	FALSE	canonical	3	52	junction_5	57.9931030382062	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1053	False	NA	-5	True	AATAAA	-15	NA	129083470	129041797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129083334
transcript_94482.known	chr4	+	2909	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	0	0	0	0	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	4025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAACACAGCTTTGTCA	713	False	NA	NA	False	AAAACA	-42	NA	129083552	129113400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
transcript_94504.known	chr4	-	5049	7	FSM	ENSMUSG00000050390.13	ENSMUST00000106051.8	5049	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	86.8210164009204	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTGCTGTTTTCCA	12	True	NA	0	True	ATTAAA	-28	NA	129121704	129113370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129121519
transcript_94505.known	chr4	-	5033	7	FSM	ENSMUSG00000050390.13	ENSMUST00000097873.10	5033	7	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_6	50.045534821356	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTGCTGTTTTCCA	NA	False	NA	0	True	ATTAAA	-28	NA	129132967	129113370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129132798
transcript_94506.known	chr4	-	5187	7	FSM	ENSMUSG00000050390.13	ENSMUST00000052602.6	5187	7	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_6	42.0713679359253	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTGCTGTTTTCCA	NA	False	NA	0	True	ATTAAA	-28	NA	129142236	129113370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129115271_129115607_129118110_129118190_129118305_129119144_129119266_129119499_129119556_129119635_129119807_129141913
transcript_94515.known	chr4	+	647	3	FSM	ENSMUSG00000028811.13	ENSMUST00000128287.2	647	3	0	0	0	0	multi-exon	FALSE	canonical	3	1802	junction_1	30	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAAAAATATACTGGCTC	855	False	NA	NA	False	ATTAAA	-32	NA	129083694	129091234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129083866_129090622_129090770_129090905
transcript_94518.nnic	chr4	-	1857	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-8	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	10008	False	NA	-27	True	AATAAA	-16	NA	129229171	129203307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_129203674_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
transcript_94520.nnic	chr4	-	2404	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-588	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	147	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	9469	False	NA	-29	True	AATAAA	-14	NA	129229751	129203309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_129203670_129203843_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
transcript_94528.known	chr4	-	4407	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	0	0	0	0	multi-exon	TRUE	canonical	3	482	junction_1	226.647613038099	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATATTTTATGTTTGA	2492	False	NA	-8	True	AATAAA	-7	NA	129229163	129200892	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
transcript_94549.nic	chr4	-	917	5	NIC	ENSMUSG00000057236.11	novel	722	4	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_1	413.387454454051	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	9974	False	NA	-29	True	AATAAA	-14	NA	129229205	129203309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289_129228438_129229010
transcript_94556.known	chr4	-	722	4	FSM	ENSMUSG00000057236.11	ENSMUST00000140291.2	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	460.816666365269	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	3218	False	NA	-29	True	AATAAA	-14	NA	129228437	129203309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289
transcript_94557.known	chr4	+	3833	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCACTTCGTAAAAAATACAG	NA	False	NA	NA	False	ATTAAA	-19	NA	129229487	129243664	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
transcript_94560.known	chr4	+	618	6	FSM	ENSMUSG00000057572.16	ENSMUST00000106047.4	618	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	246.415421595321	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	17	True	TTTAAA	-24	NA	129229839	129240826	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129229933_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
transcript_94568.nnic	chr4	-	2252	5	NNC	ENSMUSG00000028807.3	novel	2321	5	NA	NA	3009	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	62.8191849676514	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	0	True	AATAAA	-24	NA	129268900	129247420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129268592
transcript_94570.known	chr4	-	2321	5	FSM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	9.35414346693485	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	0	True	AATAAA	-24	NA	129271909	129247420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
transcript_94577.known	chr4	-	3323	4	FSM	ENSMUSG00000048485.13	ENSMUST00000106046.8	3323	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAGGAAGGAAGGAAGG	704	False	NA	NA	False	NA	NA	NA	129334646	129319557	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129321621_129322220_129322400_129326103_129327105_129334566
transcript_94581.known	chr4	+	2823	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	64	True	ATTAAA	-15	NA	129355373	129382291	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
transcript_94583.nic	chr4	+	2586	11	NIC	ENSMUSG00000040859.15	novel	2823	11	NA	NA	-2	-57	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	36.7662889070953	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCCTGAACCTTTTAC	NA	False	NA	7	True	AATAAA	-3	NA	129355462	129382234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_129355499_129355734_129355796_129359022_129359140_129360706_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
transcript_94594.known	chr4	+	1605	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	0	0	0	0	multi-exon	FALSE	canonical	3	8029	junction_1	0	3451	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTGGTCTTCTGGGGT	NA	False	NA	24	True	AATAAA	-24	NA	129407373	129409778	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129407710_129408509
transcript_94601.known	chr4	-	2038	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	0	0	0	0	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	3014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8808	False	NA	-5	True	AATAAA	-22	NA	129436506	129409896	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
transcript_94622.nic	chr4	-	1466	12	ISM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	-35	1277	-35	702	5prime_fragment	FALSE	canonical	3	1463	junction_8	194.952590125636	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAGATCCTGAAGAGAA	8773	False	NA	NA	False	AAAAAG	-30	NA	129436541	129411173	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
transcript_94628.known	chr4	-	2185	12	FSM	ENSMUSG00000000409.15	ENSMUST00000067240.11	2185	12	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_9	59.1335510476424	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	0	True	NA	NA	NA	129452184	129442141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873
transcript_94631.nic	chr4	-	1630	7	ISM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	1803	5	-110	0	3prime_fragment	FALSE	canonical	3	108	junction_2	13.2214052035158	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	0	True	NA	NA	NA	129450362	129442141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080
transcript_94635.known	chr4	-	1123	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	1314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGCAGCCTGTCTGT	6377	False	NA	0	True	AATAAA	-32	NA	129494441	129485752	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
transcript_94647.known	chr4	-	1023	9	FSM	ENSMUSG00000078552.11	ENSMUST00000106037.3	1023	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.5612494995996	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGGGAGCTCCAGATAC	NA	False	NA	NA	False	NA	NA	NA	129508047	129502540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129502637_129502874_129502979_129503407_129503535_129504008_129504049_129504123_129504271_129504701_129504834_129505055_129505133_129505561_129505614_129507799
transcript_94651.known	chr4	+	1366	7	FSM	ENSMUSG00000028797.21	ENSMUST00000129515.8	1366	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	321.763068456003	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAGAAAAGCATTAA	3164	False	NA	NA	False	NA	NA	NA	129494460	129501910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129494525_129494775_129495037_129495199_129495327_129495662_129495755_129495987_129496055_129500879_129500973_129501248
transcript_94663.known	chr4	+	875	6	FSM	ENSMUSG00000028797.21	ENSMUST00000151969.8	875	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	309.843831631356	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCGCACG	3183	False	NA	NA	False	NA	NA	NA	129494479	129501530	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129494525_129494775_129495037_129495199_129495327_129495987_129496055_129500879_129500973_129501248
transcript_94667.known	chr4	+	680	6	FSM	ENSMUSG00000028797.21	ENSMUST00000172774.8	680	6	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	325.590786110418	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCGACCGTCAGCTCTGC	3164	False	NA	NA	False	NA	NA	NA	129494460	129501351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129494525_129494775_129495037_129495662_129495755_129495987_129496055_129500879_129500973_129501248
transcript_94671.nic	chr4	-	1299	6	NIC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	-26	140	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	35.7960891718635	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCACGCCTTTAATCCC	NA	False	NA	-20	True	NA	NA	NA	129512918	129509411	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_129509881_129510753_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
transcript_94673.known	chr4	-	744	6	FSM	ENSMUSG00000028795.16	ENSMUST00000151838.8	744	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	33.5535393066067	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTACTCGGTGCTCTCCTT	NA	False	NA	-4	True	ATTAAA	-14	NA	129517630	129513068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514647_129514776_129514944_129516392_129516581_129517606
transcript_94674.known	chr4	-	879	6	FSM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	6.82934843158555	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCGGTGCTCTCCTTGT	NA	False	NA	-2	True	ATTAAA	-16	NA	129517740	129513066	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392_129516581_129517606
transcript_94675.known	chr4	+	449	5	FSM	ENSMUSG00000028797.21	ENSMUST00000181579.8	449	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	266.321703959704	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGGGCCAACCCCGACC	3177	False	NA	NA	False	NA	NA	NA	129494473	129501340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501254
transcript_94677.known	chr4	+	453	5	FSM	ENSMUSG00000028797.21	ENSMUST00000173758.8	453	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	300.683388300717	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTGGATGCTGGGCCCA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129494525_129494775_129494928_129496014_129496055_129500879_129500973_129501248
transcript_94681.known	chr4	+	1519	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3196	False	NA	9	True	AATAAA	-9	NA	129494492	129502314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
transcript_94686.known	chr4	-	2639	5	FSM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	0	0	0	0	multi-exon	TRUE	canonical	3	109	junction_1	14.396180048888	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGTACAAATATATGTA	NA	False	NA	NA	False	NA	NA	NA	129512892	129508918	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
transcript_94689.known	chr4	-	615	5	FSM	ENSMUSG00000028795.16	ENSMUST00000124630.8	615	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	36.8874978820738	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTACTCGGTGCTCTCCTT	NA	False	NA	-4	True	ATTAAA	-14	NA	129515214	129513068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129515154
transcript_94690.known	chr4	+	652	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174819.8	652	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	255.064697674923	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAGTCCAGGACAGCCA	3191	False	NA	NA	False	NA	NA	NA	129494487	129501618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129494525_129494775_129494928_129500879_129500973_129501248
transcript_94692.known	chr4	+	756	4	FSM	ENSMUSG00000028797.21	ENSMUST00000173937.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	291.296336323606	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTACAGAGTGAGTCCA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129494525_129494775_129495037_129500879_129500973_129501248
transcript_94696.known	chr4	-	491	3	FSM	ENSMUSG00000040795.13	ENSMUST00000121442.2	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	58	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGACTTGTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	129512889	129511891	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129512156_129512284_129512429_129512806
transcript_94697.known	chr4	+	1124	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174350.8	1124	4	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	212.397426224205	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCCAA	3198	False	NA	NA	False	NA	NA	NA	129494494	129501670	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129495037_129495987_129496055_129500879_129500973_129501248
transcript_94699.known	chr4	-	4569	11	FSM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_10	28.2349074728429	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCAGCCAATCGAATTAT	7860	False	NA	-5	True	ATTAAA	-22	NA	129534858	129519870	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
transcript_9471.known	chr10	-	5240	6	FSM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	5.08330601085553	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTTGGTGTCTCCATT	NA	False	NA	-5	True	AATAAA	-21	NA	60588561	60547850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_60552270_60556639_60556803_60559542_60559770_60566348_60566432_60586164_60586464_60588512
transcript_94713.nic	chr4	-	1373	9	ISM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	-22	4235	-22	1852	5prime_fragment	FALSE	canonical	3	279	junction_8	26.8933077177204	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAACACAGGGAGGCCCTC	7838	False	NA	4	True	NA	NA	NA	129534880	129524105	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
transcript_94716.known	chr4	-	4847	10	FSM	ENSMUSG00000053841.16	ENSMUST00000084264.12	4847	10	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	24.9225962224873	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTATCTCAGCCAATCGA	8120	False	NA	-10	True	ATTAAA	-17	NA	129534598	129519875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048
transcript_94717.known	chr4	-	989	6	FSM	ENSMUSG00000053841.16	ENSMUST00000133803.8	989	6	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_5	33.2349213930167	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGCGCCAGGAGAATAT	7860	False	NA	NA	False	NA	NA	NA	129534858	129525957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
transcript_94718.known	chr4	-	4918	9	FSM	ENSMUSG00000053841.16	ENSMUST00000142577.2	4918	9	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	26.4007575648882	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTATCTCAGCCAATCGA	8285	False	NA	-10	True	ATTAAA	-17	NA	129534433	129519875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048
transcript_9472.known	chr10	-	2107	6	FSM	ENSMUSG00000020100.16	ENSMUST00000150845.8	2107	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	17.1510932596147	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGACGCAATT	NA	False	NA	NA	False	NA	NA	NA	60588562	60551007	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_60552270_60556639_60556803_60559542_60559770_60566348_60566455_60586164_60586464_60588512
transcript_94720.known	chr4	-	5710	14	FSM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_4	15.2943505832485	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTTCTTTGGTTTGGAG	8834	False	NA	3	True	AATAAA	-22	NA	129566560	129537772	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098_129555233_129566469
transcript_94727.known	chr4	-	1851	10	FSM	ENSMUSG00000053730.16	ENSMUST00000125445.8	1851	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	9.25896295822207	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	10001	False	NA	NA	False	AAAAAG	-21	NA	129590589	129570147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586428_129586512_129586858_129587079_129587678_129587806_129590507
transcript_9473.known	chr10	-	5869	17	FSM	ENSMUSG00000020099.9	ENSMUST00000077925.7	5869	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.845484328654293	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTGGTCTGATGTCTTCT	NA	False	NA	NA	False	AATAAA	-38	NA	60667360	60598371	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_60601153_60602758_60602941_60604102_60604268_60604886_60605037_60607956_60608191_60608267_60608437_60609522_60609611_60610131_60610522_60610744_60610940_60612963_60612997_60613168_60613334_60613946_60614115_60614562_60614744_60615446_60615551_60615873_60616018_60618836_60619062_60666865
transcript_94733.known	chr4	-	1810	9	FSM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_6	5.99869777535091	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	9992	False	NA	NA	False	AAAAAG	-21	NA	129590631	129570147	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590507
transcript_94745.known	chr4	-	3738	9	FSM	ENSMUSG00000028790.14	ENSMUST00000066257.6	3738	9	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_8	66.0235516690825	1661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAAACCATATGC	4981	False	NA	NA	False	AATAAA	-10	NA	129636089	129607611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129609980_129612875_129612935_129613831_129613900_129614444_129614647_129616437_129616572_129619368_129619516_129621347_129621465_129623993_129624119_129635571
transcript_9475.known	chr10	-	3653	16	FSM	ENSMUSG00000020099.9	ENSMUST00000218637.2	3653	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.85374989832438	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATCCTTGAATGTGG	NA	False	NA	NA	False	NA	NA	NA	60667161	60600355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_60601153_60602758_60602941_60604102_60604268_60604886_60605037_60607956_60608191_60608267_60608437_60609522_60609611_60610131_60610522_60610744_60610940_60613168_60613334_60613946_60614115_60614562_60614744_60615446_60615551_60615873_60616018_60618836_60619062_60666865
transcript_94754.known	chr4	-	1916	2	FSM	ENSMUSG00000028790.14	ENSMUST00000139281.2	1916	2	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGACAGCCTCGGCTACA	4974	False	NA	NA	False	NA	NA	NA	129636096	129622727	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_129624119_129635571
transcript_94758.nnic	chr4	+	1571	7	NNC	ENSMUSG00000028788.15	novel	3646	6	NA	NA	-49	1518	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1184.54867167017	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGGGGATTAATTTAGT	NA	False	NA	NA	False	AATAAA	-25	NA	129713964	129741812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_129714128_129714292_129714395_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
transcript_94759.nnic	chr4	+	1985	7	NNC	ENSMUSG00000028788.15	novel	3646	6	NA	NA	-49	-1545	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1184.54867167017	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTGGCGCATATATTCT	NA	False	NA	5	True	NA	NA	NA	129713964	129742226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_129714128_129714292_129714395_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
transcript_94761.nnic	chr4	+	1530	7	NNC	ENSMUSG00000028788.15	novel	3646	6	NA	NA	-37	1518	at_least_one_novel_splicesite	FALSE	non_canonical	1	7	junction_1	1182.69223243694	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGGGGATTAATTTAGT	NA	False	NA	NA	False	AATAAA	-25	NA	129713976	129741812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_129714097_129714290_129714395_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
transcript_94762.nnic	chr4	+	1944	7	NNC	ENSMUSG00000028788.15	novel	3646	6	NA	NA	-37	-1545	at_least_one_novel_splicesite	FALSE	non_canonical	1	7	junction_1	1182.69223243694	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTGGCGCATATATTCT	NA	False	NA	5	True	NA	NA	NA	129713976	129742226	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_129714097_129714290_129714395_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
transcript_94767.nnic	chr4	+	1224	6	NNC	ENSMUSG00000028788.15	novel	3646	6	NA	NA	-37	38	at_least_one_novel_splicesite	FALSE	non_canonical	1	7	junction_1	1262.18784655851	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTATGAAGCTGTATGT	NA	False	NA	16	True	AATGAA	-31	NA	129713976	129740332	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_129714097_129714290_129714395_129732770_129733472_129736462_129736556_129738854_129738986_129740257
transcript_94769.known	chr4	+	3382	6	FSM	ENSMUSG00000028788.15	ENSMUST00000165853.2	3382	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	1089.03101884198	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAGTTCATGTTTGCTC	NA	False	NA	40	True	AATAAA	-41	NA	129714500	129743796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129714593_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
transcript_9477.known	chr10	+	789	4	FSM	ENSMUSG00000020098.8	ENSMUST00000020298.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	1.24721912892465	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGCTTCTAGAACCTTC	NA	False	NA	6	True	AATAAA	-17	NA	60925137	60930103	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_60925196_60927842_60927975_60928382_60928464_60929585
transcript_94772.known	chr4	+	3646	6	FSM	ENSMUSG00000028788.15	ENSMUST00000030578.14	3646	6	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	910.936792538319	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTGAATTTCTTCCCC	NA	False	NA	15	True	AATAAA	-16	NA	129714013	129743771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_129714395_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
transcript_94774.nic	chr4	+	3887	25	NIC	ENSMUSG00000028782.15	novel	4871	29	NA	NA	-3189	0	combination_of_known_junctions	TRUE	canonical	2	12	junction_14	5.46055934253382	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGCCCGGATTGTTT	1434	False	NA	9	True	AATAAA	-15	NA	129900479	129916426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_129900710_129901354_129901520_129901602_129901771_129901864_129901967_129902115_129902223_129903003_129903199_129903274_129903344_129903446_129903556_129903850_129904188_129905105_129905212_129905394_129905439_129905617_129905745_129906068_129906173_129906266_129906370_129907285_129907437_129907614_129907685_129908115_129908183_129908343_129908430_129910854_129911027_129911321_129911418_129911707_129911748_129912453_129913074_129915011_129915048_129915355_129915455_129915942
transcript_94785.known	chr4	+	1551	5	FSM	ENSMUSG00000028779.17	ENSMUST00000030563.6	1551	5	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	25.1047804212664	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	9278	False	NA	25	True	AATAAA	-32	NA	130001348	130021927	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
transcript_94791.known	chr4	-	1952	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_11	29.3189922368611	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGTCTGGGAGTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	130068595	130059394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068515
transcript_94792.known	chr4	-	1976	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105998.8	1976	12	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	72.1002516014454	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATCTCCCTAGCCTCC	NA	False	NA	NA	False	NA	NA	NA	130068915	130059511	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068694
transcript_948.nic	chr1	-	2228	8	NIC	ENSMUSG00000001143.14	novel	2290	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	65.1654096299939	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTCTGGCTCAGTGGCC	NA	False	NA	-3	True	CATAAA	-21	NA	36484352	36462266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482600_36482691_36484130
transcript_94802.known	chr4	-	1878	10	FSM	ENSMUSG00000023232.18	ENSMUST00000105996.8	1878	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	3.01027048536535	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCCCATGTCTTGTG	7796	False	NA	-1	True	AATAAA	-17	NA	130169379	130147287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_130147859_130149148_130149359_130152020_130152157_130152493_130152585_130154435_130154606_130156820_130156959_130157374_130157455_130158053_130158245_130158861_130159024_130169250
transcript_94804.known	chr4	-	2113	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGGTCCAGGCTGATGC	NA	False	NA	NA	False	AATAAA	-17	NA	130253736	130209175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
transcript_94813.nnic	chr4	-	1381	7	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	-22	200	combination_of_known_splicesites	FALSE	canonical	3	73	junction_5	86.0503728444373	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTATTCCTATAATCCT	NA	False	NA	-6	True	CATAAA	-34	NA	130253758	130209871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130247928_130248050_130253668
transcript_94816.nic	chr4	-	699	7	ISM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	-22	11820	-22	9653	5prime_fragment	FALSE	canonical	3	221	junction_5	39.6007856263259	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAAGAAGGTAAGAGCTG	NA	False	NA	-11	True	NA	NA	NA	130253758	130220995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
transcript_94818.nnic	chr4	-	1265	6	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	-27	200	combination_of_known_splicesites	FALSE	canonical	3	25	junction_5	110.937099295051	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTATTCCTATAATCCT	NA	False	NA	-6	True	CATAAA	-34	NA	130253763	130209871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130253668
transcript_9482.known	chr10	-	4102	15	FSM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_14	78.4471744785844	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	-2	True	AATAAA	-16	NA	60983423	60934420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983301
transcript_94820.nnic	chr4	-	641	6	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	-22	9653	combination_of_known_splicesites	FALSE	canonical	3	73	junction_4	91.6493316942355	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAAGAAGGTAAGAGCTG	NA	False	NA	-11	True	NA	NA	NA	130253758	130220995	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130247928_130248050_130253668
transcript_94823.nnic	chr4	+	901	5	NNC	ENSMUSG00000028773.9	novel	823	4	NA	NA	83	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	2159.9895109699	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202470	130209256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_130202644_130203234_130203396_130206083_130206257_130207746_130207849_130208964
transcript_94827.known	chr4	+	823	4	FSM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	4337	junction_3	149.244765402342	1281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202387	130209256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130202644_130206083_130206257_130207746_130207849_130208964
transcript_94828.nic	chr4	+	2181	3	NIC	ENSMUSG00000028773.9	novel	823	4	NA	NA	132	0	intron_retention	FALSE	canonical	3	4337	junction_2	181.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202519	130209256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_130202644_130206083_130207849_130208964
transcript_9483.known	chr10	-	4070	15	FSM	ENSMUSG00000020097.15	ENSMUST00000092498.12	4070	15	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_14	85.0811437417726	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	-2	True	AATAAA	-16	NA	60983453	60934420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983363
transcript_94830.known	chr4	+	1584	10	FSM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_7	51.5407066738946	734	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACCTTGTGACTTGG	NA	False	NA	22	True	ATTAAA	-23	NA	130253924	130283819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
transcript_9484.nic	chr10	-	4127	15	NIC	ENSMUSG00000020097.15	novel	4070	15	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_14	117.157773440566	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	-2	True	AATAAA	-16	NA	60983541	60934420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983394
transcript_94840.known	chr4	+	1028	7	FSM	ENSMUSG00000078532.10	ENSMUST00000180884.8	1028	7	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_3	30.3790863735052	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGCTCTACTCCTTACC	NA	False	NA	NA	False	NA	NA	NA	130297403	130339644	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130297542_130332055_130332194_130333903_130333985_130337183_130337399_130338581_130338643_130339094_130339177_130339331
transcript_94891.nic	chr4	+	4138	22	NIC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	0	91	combination_of_known_junctions	FALSE	canonical	3	218	junction_8	114.255134797804	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAGAAATTTGAATTTTA	NA	False	NA	NA	False	ATTAAA	-10	NA	130390669	130507668	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_94893.known	chr4	+	5389	22	FSM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_8	122.217214904643	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390631	130508875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_94897.known	chr4	+	4017	22	FSM	ENSMUSG00000028580.16	ENSMUST00000097864.9	4017	22	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_8	95.9617506945964	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAAAAAAAGGTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	130390696	130507577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_94901.known	chr4	+	3991	22	FSM	ENSMUSG00000028580.16	ENSMUST00000097862.3	3991	22	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_17	105.62885866236	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTTAAAAAAAAAGACAAAAA	NA	False	NA	NA	False	NA	NA	NA	130390716	130507565	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_9492.known	chr10	-	5188	22	FSM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_20	4.41446807041021	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGCCCTTGGTGTTTTGT	4942	False	NA	-4	True	TTTAAA	-19	NA	61109217	61032890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_61034739_61036141_61036253_61036954_61037085_61038601_61038810_61040625_61040759_61041142_61041312_61043078_61043243_61047366_61047448_61048902_61049027_61049308_61049443_61054136_61054313_61057636_61057786_61058562_61058677_61060051_61060185_61061115_61061260_61062885_61062992_61065434_61065583_61066196_61066281_61081704_61081896_61085382_61085540_61106635_61107037_61108934
transcript_94985.known	chr4	+	5058	20	FSM	ENSMUSG00000028580.16	ENSMUST00000105992.9	5058	20	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	153.52394310997	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390669	130508873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_950.nnic	chr1	-	1481	8	NNC	ENSMUSG00000001143.14	novel	3378	8	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	65.9619556398742	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGTTCTGGCTCAGTGG	NA	False	NA	-5	True	CATAAA	-19	NA	36484352	36462268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_36462811_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_9501.nnic	chr10	-	4266	21	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	-36	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	86.6294407231168	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGCTTTGCTGATTGG	NA	False	NA	-5	True	ATTAAA	-18	NA	61219345	61155438	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_61156821_61156868_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
transcript_95040.known	chr4	+	4614	18	FSM	ENSMUSG00000028580.16	ENSMUST00000105991.9	4614	18	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	156.174288231124	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390669	130508873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_95069.known	chr4	+	1273	4	FSM	ENSMUSG00000028580.16	ENSMUST00000122847.2	1273	4	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_3	83.2119115404893	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAACAAAAGAATT	NA	False	NA	NA	False	AAAAAG	-7	NA	130390676	130446192	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464
transcript_95072.known	chr4	+	4973	5	FSM	ENSMUSG00000025743.15	ENSMUST00000070478.4	4973	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	11.1018016555873	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGGTGGCCCACGTGTG	NA	False	NA	10	True	AATAAA	-18	NA	130519847	130553630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130520114_130544155_130544274_130545892_130546516_130548678_130548968_130549953
transcript_95074.known	chr4	+	528	2	FSM	ENSMUSG00000025743.15	ENSMUST00000146093.2	528	2	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCCCGTGGCTCCTGCC	NA	False	NA	NA	False	NA	NA	NA	130520014	130544584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130520114_130544155
transcript_95076.nnic	chr4	+	2773	9	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	-215	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	159.179487921654	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTCTGTCTCATGTGGT	NA	False	NA	17	True	AATAAA	-13	NA	130640220	130663447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662433_130662469
transcript_95079.known	chr4	+	2600	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCATGTGGTTCTTG	NA	False	NA	22	True	AATAAA	-18	NA	130640435	130663452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
transcript_95081.known	chr4	+	2001	8	FSM	ENSMUSG00000040533.8	ENSMUST00000102576.4	2001	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	5.36808406515884	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGAATTAGTGGTGGTGA	1491	False	NA	NA	False	AATAAA	-32	NA	130671695	130682786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_130671841_130673139_130673487_130677245_130677469_130678599_130678726_130679149_130679567_130680143_130680297_130681646_130681728_130682277
transcript_95085.known	chr4	+	1337	10	FSM	ENSMUSG00000028910.13	ENSMUST00000030742.11	1337	10	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	17.6243378301319	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131570780	131595097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
transcript_95089.nic	chr4	+	2951	9	NIC	ENSMUSG00000028911.17	novel	3100	6	NA	NA	-129	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_3	167.217625790465	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACCGCGCTTGAATCTA	NA	False	NA	22	True	AATAAA	-22	NA	131600798	131629017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_131601182_131611586_131611794_131612619_131612804_131613441_131613616_131618517_131618661_131619391_131619505_131624967_131625183_131627372_131627463_131627575
transcript_951.known	chr1	-	2174	7	FSM	ENSMUSG00000001143.14	ENSMUST00000001171.13	2174	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	67.569717082926	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTCTGGCTCAGTGGCC	NA	False	NA	-3	True	CATAAA	-21	NA	36484352	36462266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36478689_36478808_36482571_36482691_36484130
transcript_9510.known	chr10	-	4282	20	FSM	ENSMUSG00000020092.10	ENSMUST00000020289.10	4282	20	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_14	26.6759563689748	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTGCTGATTGGTCTT	NA	False	NA	-1	True	ATTAAA	-22	NA	61219309	61155434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
transcript_95101.known	chr4	+	2257	6	FSM	ENSMUSG00000028911.17	ENSMUST00000053819.6	2257	6	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	33.990586932267	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACCGCGCTTGAATCTA	NA	False	NA	22	True	AATAAA	-22	NA	131600927	131629017	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_131601182_131618517_131618661_131619391_131619505_131624967_131625183_131627372_131627463_131627575
transcript_95108.nic	chr4	-	5624	20	NIC	ENSMUSG00000028906.18	novel	5235	21	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	36.2164162896367	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	5272	False	NA	NA	False	AATAAA	-21	NA	131802669	131650723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
transcript_95110.nic	chr4	-	5561	19	NIC	ENSMUSG00000028906.18	novel	5074	18	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	31.5264439267525	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	5272	False	NA	NA	False	AATAAA	-21	NA	131802669	131650723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
transcript_95111.nic	chr4	-	5687	19	NIC	ENSMUSG00000028906.18	novel	5141	18	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	34.7035060668707	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	131776469	131650723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734750_131776181
transcript_95112.nic	chr4	-	5174	19	NIC	ENSMUSG00000028906.18	novel	5074	18	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	31.5274229054918	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	5272	False	NA	NA	False	AATAAA	-21	NA	131802669	131650723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
transcript_95113.nic	chr4	-	5300	19	NIC	ENSMUSG00000028906.18	novel	5303	21	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	34.6963903911176	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	131776469	131650723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734750_131776181
transcript_95116.known	chr4	-	5074	18	FSM	ENSMUSG00000028906.18	ENSMUST00000146021.8	5074	18	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_5	24.1593613426437	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	5309	False	NA	NA	False	AATAAA	-21	NA	131802632	131650723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
transcript_95117.known	chr4	-	5141	18	FSM	ENSMUSG00000028906.18	ENSMUST00000084253.10	5141	18	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_17	28.8854077694417	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCCT	NA	False	NA	NA	False	AATAAA	-5	NA	131776389	131650739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734750_131776181
transcript_95125.known	chr4	-	3654	8	FSM	ENSMUSG00000028906.18	ENSMUST00000135579.8	3654	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	43.9884029243701	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTGTGAGGATTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	131695187	131650723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131695098
transcript_95126.known	chr4	-	4021	3	FSM	ENSMUSG00000050511.2	ENSMUST00000056336.2	4021	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGTGTGTGTGTGTGTG	1634	False	NA	NA	False	ATTAAA	-23	NA	131871797	131838036	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_131841380_131844429_131844780_131871469
transcript_95132.known	chr4	-	4129	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	0	0	0	0	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGGCCTGCATGTATA	NA	False	NA	NA	False	ATTAAA	-19	NA	131939614	131912222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
transcript_95133.known	chr4	-	955	4	FSM	ENSMUSG00000040025.18	ENSMUST00000085181.5	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	419.072255769283	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGTTCTTGTGTATTA	NA	False	NA	NA	False	AGTAAA	-21	NA	131939402	131913600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_131914259_131938062_131938143_131938742_131938768_131939210
transcript_95134.known	chr4	-	2536	4	FSM	ENSMUSG00000040025.18	ENSMUST00000102570.5	2536	4	0	0	0	0	multi-exon	FALSE	canonical	3	871	junction_2	49.2815043060443	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGGAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	131939416	131914060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742
transcript_95136.known	chr4	-	4632	11	FSM	ENSMUSG00000028901.14	ENSMUST00000105965.8	4632	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	24.0074988284911	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAACGCCAACTGATTGCG	1993	False	NA	NA	False	AATAAA	-30	NA	131988832	131950256	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131979741_131979805_131988801
transcript_95137.known	chr4	-	1925	10	FSM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	18.219511993573	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1912	False	NA	-58	True	NA	NA	NA	131988913	131952981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
transcript_95141.nnic	chr4	-	1877	9	NIC	ENSMUSG00000028901.14	novel	1925	10	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	25.6795151823394	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1877	False	NA	-58	True	NA	NA	NA	131988948	131952981	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131978985_131979144_131988801
transcript_95144.nnic	chr4	+	1509	7	NNC	ENSMUSG00000028899.12	novel	3787	6	NA	NA	0	614	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	223.982886251011	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTTAGTGTCCATAGGA	NA	False	NA	23	True	AATAAA	-19	NA	132001685	132020637	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_132001799_132003933_132004096_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
transcript_95145.known	chr4	+	777	7	FSM	ENSMUSG00000028899.12	ENSMUST00000105963.2	777	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	231.697180244675	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACCTCAGCCATCTCAT	NA	False	NA	NA	False	NA	NA	NA	132001726	132020023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132001799_132009304_132009390_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
transcript_95148.known	chr4	+	3787	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGACTTGGGTGGAATTG	NA	False	NA	NA	False	NA	NA	NA	132001685	132023077	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
transcript_95154.known	chr4	-	761	2	FSM	ENSMUSG00000089687.3	ENSMUST00000040411.7	761	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132030696	132029507	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132029994_132030421
transcript_95155.known	chr4	+	606	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035988	132038335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
transcript_95156.known	chr4	+	896	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232260.2	896	4	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035933	132038335	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037816_132038144
transcript_95157.known	chr4	-	1017	10	FSM	ENSMUSG00000028898.16	ENSMUST00000147652.8	1017	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	205.952229868128	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGAAGGCAGAGGCCTAG	2465	False	NA	-102	True	NA	NA	NA	132056700	132039175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132052662_132052801_132053256_132053357_132055779_132055878_132056663
transcript_95159.nnic	chr4	-	1195	9	NIC	ENSMUSG00000028898.16	novel	1017	10	NA	NA	-27	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	220.972813655888	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2289	False	NA	0	True	AATAAA	-17	NA	132056876	132039073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132052662_132052801_132055779_132055878_132056663
transcript_95161.known	chr4	-	1130	9	FSM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	39.2324801663112	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2316	False	NA	0	True	AATAAA	-17	NA	132056849	132039073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
transcript_95163.nic	chr4	-	1064	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	168.067042016705	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2284	False	NA	0	True	AATAAA	-17	NA	132056881	132039073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132056663
transcript_95164.nic	chr4	-	1057	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	2	19	junction_6	176.968693184266	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2289	False	NA	0	True	AATAAA	-17	NA	132056876	132039073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132055779_132055878_132056663
transcript_95165.known	chr4	-	1791	8	FSM	ENSMUSG00000028898.16	ENSMUST00000146166.8	1791	8	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_7	40.7315752763111	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGCTTCTTCAACTGT	2338	False	NA	-2	True	AATAAA	-15	NA	132056827	132039075	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132053357_132055779_132055878_132056663
transcript_95168.known	chr4	-	961	8	FSM	ENSMUSG00000028898.16	ENSMUST00000105962.10	961	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	178.321310549015	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
transcript_95171.nic	chr4	-	941	7	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	188.905399605199	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2307	False	NA	0	True	AATAAA	-17	NA	132056858	132039073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132056663
transcript_95185.known	chr4	-	2278	11	FSM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_9	136.55039362814	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5481	False	NA	-14	True	AATAAA	-17	NA	132073016	132059233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
transcript_95194.known	chr4	-	2285	10	FSM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	35.0019399815087	2187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTTATGCGTGTCC	5439	False	NA	-10	True	AATAAA	-21	NA	132073058	132059229	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
transcript_95219.known	chr4	-	437	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_1	21	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGATTTAATGTGT	NA	False	NA	-9	True	ATTAAA	-15	NA	132080997	132079243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132079555_132079973_132080010_132080907
transcript_95220.nic	chr4	-	865	2	ISM	ENSMUSG00000028896.14	ENSMUST00000155129.2	507	6	-91	14111	-91	-12443	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132081007	132079244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_132080010_132080907
transcript_95221.known	chr4	-	205	1	FSM	ENSMUSG00000065353.3	ENSMUST00000083419.3	205	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	235	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAATTCCTAAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	132079837	132079632	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132079600_132079800
transcript_95222.known	chr4	-	426	3	FSM	ENSMUSG00000085241.8	ENSMUST00000151374.2	426	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	490.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132079555_132079930_132080010_132080907
transcript_95223.known	chr4	-	4614	14	FSM	ENSMUSG00000066043.14	ENSMUST00000102568.10	4614	14	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_11	24.1391430016078	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATTTGTGTTACTTTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	132149800	132083233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132110592_132110674_132114202_132114377_132140380_132140435_132149655
transcript_95225.known	chr4	-	4483	13	FSM	ENSMUSG00000066043.14	ENSMUST00000084170.12	4483	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_10	11.8591268181468	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTGAATTTGTGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	132149757	132083240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132114202_132114377_132140380_132140435_132149655
transcript_95230.known	chr4	-	1675	3	FSM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	8.5	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1047	False	NA	-15	True	AATAAA	-13	NA	132191232	132186041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132187425_132190175_132190320_132191084
transcript_95237.known	chr4	-	3475	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	0	0	0	0	multi-exon	TRUE	canonical	3	666	junction_4	59.9637750728526	1819	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTAATGGGATGTT	NA	False	NA	-31	True	AATAAA	-22	NA	132237812	132219342	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
transcript_95261.known	chr4	-	539	3	FSM	ENSMUSG00000054428.13	ENSMUST00000067496.7	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_2	284	1594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9241	False	NA	-20	True	AATAAA	-19	NA	132260970	132257865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132258135_132260606_132260699_132260792
transcript_95262.known	chr4	-	1014	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAACAAAAAA	9305	False	NA	NA	False	NA	NA	NA	132260906	132259798	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132260699_132260792
transcript_95265.known	chr4	-	462	2	FSM	ENSMUSG00000054428.13	ENSMUST00000152993.8	462	2	0	0	0	0	multi-exon	FALSE	canonical	3	8437	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9412	False	NA	-20	True	AATAAA	-19	NA	132260799	132257865	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132258135_132260606
transcript_95267.known	chr4	+	1401	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	0	0	0	0	multi-exon	TRUE	canonical	3	2684	junction_8	233.065676097962	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGTCTCCTCCTCGGGT	2331	False	NA	19	True	AATAAA	-19	NA	132262860	132281053	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
transcript_95271.known	chr4	+	613	8	FSM	ENSMUSG00000054405.15	ENSMUST00000138334.8	613	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	1070.81689206256	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCAGGACCAGAGCCTCC	2421	False	NA	NA	False	NA	NA	NA	132262950	132280450	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132273947_132274020_132277687_132277780_132278845_132278922_132280327
transcript_95273.known	chr4	+	1837	8	FSM	ENSMUSG00000054405.15	ENSMUST00000142281.8	1837	8	0	0	0	0	multi-exon	FALSE	canonical	3	2684	junction_7	240.501516818162	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCCGTTGTGTCCTTGCT	2348	False	NA	1	True	NA	NA	NA	132262877	132280972	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
transcript_95274.known	chr4	+	772	8	FSM	ENSMUSG00000054405.15	ENSMUST00000105940.10	772	8	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_2	1077.48700451465	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCACCCCACCAGAGAG	2358	False	NA	-50	True	NA	NA	NA	132262887	132280508	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132262975_132265497_132265600_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
transcript_95277.nic	chr4	+	624	7	ISM	ENSMUSG00000054405.15	ENSMUST00000150207.8	932	8	-145	3001	-36	0	5prime_fragment	FALSE	canonical	3	2894	junction_4	170.699297010855	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATGAGAGGTGCCTATC	2295	False	NA	NA	False	ATTAAA	-25	NA	132262824	132277768	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687
transcript_95279.nic	chr4	+	481	6	ISM	ENSMUSG00000054405.15	ENSMUST00000150207.8	932	8	-145	6812	-36	0	5prime_fragment	FALSE	canonical	3	2894	junction_4	181.8960142499	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAACAACTGAAGAAG	2295	False	NA	NA	False	NA	NA	NA	132262824	132273957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947
transcript_95282.nic	chr4	+	473	5	ISM	ENSMUSG00000054405.15	ENSMUST00000150207.8	932	8	-145	8705	-36	137	5prime_fragment	FALSE	canonical	3	2894	junction_4	150.941006688044	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATCTCTAGTGCTGCTG	2295	False	NA	NA	False	NA	NA	NA	132262824	132272064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967
transcript_95290.nic	chr4	+	2658	18	NIC	ENSMUSG00000028886.16	novel	5186	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	22.5258021989425	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGAAGTTCTGTCCCAG	NA	False	NA	28	True	NA	NA	NA	132366366	132449446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132408066_132408205_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
transcript_95296.known	chr4	+	5160	17	FSM	ENSMUSG00000028886.16	ENSMUST00000081726.13	5160	17	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_15	5.48542101848163	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTTTTCTCCTTTGTCTTT	NA	False	NA	21	True	AATAAA	-17	NA	132366356	132452076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
transcript_95298.known	chr4	+	2320	16	FSM	ENSMUSG00000028886.16	ENSMUST00000157029.8	2320	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	19.7337837786427	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGAAGTTCTGTCCCAG	NA	False	NA	28	True	NA	NA	NA	132366389	132449446	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397527_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
transcript_95306.known	chr4	-	4245	3	FSM	ENSMUSG00000037752.5	ENSMUST00000045550.5	4245	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	6.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTGTTTATTTTCCAGGA	4044	False	NA	NA	False	AATAAA	-20	NA	132459857	132452207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132455882_132458186_132458384_132459483
transcript_95307.known	chr4	-	376	3	FSM	ENSMUSG00000037752.5	ENSMUST00000150104.2	376	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	21.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTACCTGTCTTCCCTCCAA	4062	False	NA	NA	False	NA	NA	NA	132459839	132455816	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132455882_132458186_132458384_132459725
transcript_95308.known	chr4	-	2006	8	FSM	ENSMUSG00000028885.9	ENSMUST00000030709.9	2006	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	8.56666534317997	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCGTGAGGGATCACAGC	NA	False	NA	-1	True	AATAAA	-31	NA	132484563	132460276	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132461071_132465329_132465464_132465547_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
transcript_95309.known	chr4	+	1813	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	0	0	0	0	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCGCCCCTGGCCGTGCT	NA	False	NA	7	True	AGTAAA	-24	NA	132495645	132506063	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
transcript_95312.known	chr4	+	823	5	FSM	ENSMUSG00000028884.15	ENSMUST00000130090.8	823	5	0	0	0	0	multi-exon	FALSE	canonical	3	1348	junction_4	96.0676844729798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	132495686	132501546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137
transcript_95314.known	chr4	-	3079	6	FSM	ENSMUSG00000037731.6	ENSMUST00000045154.6	3079	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.16619037896906	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAATGTCTTGTCTTGTC	9912	False	NA	NA	False	AATAAA	-23	NA	132523698	132509153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132510317_132510658_132510810_132512493_132513582_132516855_132517264_132519788_132519930_132523570
transcript_95319.nnic	chr4	-	2145	8	NNC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	76.5037013910478	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	-6	True	ATTAAA	-16	NA	132570472	132554239	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570119_132570236_132570367
transcript_95322.known	chr4	-	1090	7	FSM	ENSMUSG00000028882.14	ENSMUST00000105919.2	1090	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	56.674509261219	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGGTGGAGGGATGACAA	NA	False	NA	NA	False	NA	NA	NA	132570434	132555137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132555515_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
transcript_95324.known	chr4	-	883	5	FSM	ENSMUSG00000028882.14	ENSMUST00000131725.8	883	5	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_4	11.2998893799895	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTGTGAAAGATCTCCA	NA	False	NA	NA	False	NA	NA	NA	132570435	132557701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
transcript_95325.known	chr4	-	2934	9	FSM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_5	25.18928343562	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTGCACTTGATTGT	6093	False	NA	-4	True	AATAAA	-14	NA	132611820	132580811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
transcript_95330.known	chr4	-	3053	9	FSM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	24.0676130931175	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTGTGATTCAGTTG	NA	False	NA	0	True	AATAAA	-19	NA	132649869	132626523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
transcript_95332.known	chr4	-	1863	8	FSM	ENSMUSG00000028878.12	ENSMUST00000097856.10	1863	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	31.9367998345712	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGATCTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	132649804	132627561	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
transcript_95338.nic	chr4	-	820	6	ISM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	-136	11514	-136	3014	5prime_fragment	FALSE	canonical	3	69	junction_1	24.5161171477051	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGTTTGAGTCAATCAC	NA	False	NA	NA	False	AAGAAA	-4	NA	132650005	132638037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
transcript_95339.known	chr4	+	3363	13	FSM	ENSMUSG00000028874.15	ENSMUST00000030693.13	3363	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.27766007321619	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCAGGCTGACCTTAAAT	NA	False	NA	NA	False	AAGAAA	-28	NA	132701412	132729221	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132701582_132711462_132711526_132713463_132713664_132714499_132714603_132715993_132716093_132721957_132722062_132722228_132722379_132724431_132724588_132724702_132724883_132725278_132725356_132725651_132725806_132727218_132727351_132727445
transcript_95346.known	chr4	+	5898	6	FSM	ENSMUSG00000037692.15	ENSMUST00000105914.2	5898	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	36.5217743271052	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAGCGAGAGAGCGAGC	NA	False	NA	NA	False	AAAAAG	-12	NA	132766803	132804553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132767098_132782323_132782515_132787986_132788204_132788337_132788376_132788686_132793589_132804297
transcript_95353.known	chr4	+	5642	9	FSM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_8	37.0776212829248	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGGTGTCTGTGTGTGT	NA	False	NA	44	True	GATAAA	-22	NA	132857815	132927067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027
transcript_9536.known	chr10	+	2095	3	FSM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	2.5	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCTCACAATGTGTT	NA	False	NA	20	True	ATTAAA	-17	NA	61253750	61261117	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61254275_61258760_61259477_61260262
transcript_95361.known	chr4	+	986	6	FSM	ENSMUSG00000028865.15	ENSMUST00000105910.2	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	9.2736184954957	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGACCTATGTCTTGGG	NA	False	NA	20	True	AATAAA	-22	NA	132948120	132951866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132948379_132948753_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
transcript_95363.known	chr4	+	4334	29	FSM	ENSMUSG00000028862.7	ENSMUST00000030677.7	4334	29	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_2	5.06727697273075	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTCTTGGCAACTTCA	8449	False	NA	18	True	ATTAAA	-18	NA	132968128	132980240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_132968743_132970128_132970269_132970363_132970388_132970621_132970813_132970985_132971155_132972292_132972400_132972816_132972988_132973088_132973202_132973568_132973729_132973940_132974104_132974185_132974294_132974390_132974441_132974512_132974609_132974724_132974813_132974891_132975026_132975323_132975452_132975698_132975836_132976102_132976209_132976972_132977131_132977240_132977434_132977518_132977658_132977959_132978117_132978234_132978412_132978652_132978759_132978921_132979085_132979169_132979283_132979365_132979440_132979710_132979788_132979962
transcript_95365.known	chr4	-	1951	15	FSM	ENSMUSG00000028860.14	ENSMUST00000030674.8	1951	15	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_9	2.42541812090709	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCTTAACTGGGTATGA	NA	False	NA	4	True	AATAAA	-20	NA	132990424	132980400	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132980620_132980765_132980972_132982843_132982944_132983044_132983124_132983352_132983512_132983798_132983896_132984175_132984343_132984446_132984561_132984727_132984823_132985044_132985133_132986171_132986218_132986292_132986369_132986598_132986748_132988163_132988393_132990297
transcript_95367.known	chr4	-	2484	13	FSM	ENSMUSG00000028860.14	ENSMUST00000142039.8	2484	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	2.59272486435067	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTACTGACTGCTTAACT	NA	False	NA	-4	True	AATAAA	-12	NA	132990398	132980408	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132980620_132980765_132980972_132982843_132982944_132983044_132983124_132983352_132984343_132984446_132984561_132984727_132984823_132985044_132985133_132986171_132986218_132986292_132986369_132986598_132986748_132988163_132988393_132990297
transcript_95369.known	chr4	-	613	7	FSM	ENSMUSG00000028857.17	ENSMUST00000134781.8	613	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	347.535609686259	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCTCCTCGGCATTATC	NA	False	NA	NA	False	NA	NA	NA	133004929	132994197	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132997980_132998126_132998273_132998359_133004841
transcript_95371.known	chr4	-	1484	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_4	52.562343935559	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	-12	True	AATAAA	-14	NA	133005103	132993355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
transcript_95372.known	chr4	-	546	5	FSM	ENSMUSG00000028857.17	ENSMUST00000139030.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	309.884151740614	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTATCCTGACCGTCAG	NA	False	NA	NA	False	NA	NA	NA	133005081	132994186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_133004841
transcript_95379.nic	chr4	-	4257	17	NIC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_16	112.020575676971	1365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCATTTGTTGGGGC	8348	False	NA	1	True	ATTAAA	-22	NA	133080831	133019769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096_133080261_133080600
transcript_95381.known	chr4	-	4191	16	FSM	ENSMUSG00000037622.15	ENSMUST00000043305.14	4191	16	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_15	124.591599502802	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCATTTGTTGGGGC	4264	False	NA	1	True	ATTAAA	-22	NA	133066635	133019769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133066306
transcript_95382.nnic	chr4	-	4010	16	NNC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	-320	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_15	123.385394417474	193	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCATTTGTTGGGGC	3944	False	NA	1	True	ATTAAA	-22	NA	133066955	133019769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133066807
transcript_95390.known	chr4	+	4676	12	FSM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	11.7922793063796	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCAGGGCTGCTTCCTGGG	157	False	NA	22	True	AATAAA	-23	NA	133097016	133151013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133098219_133139147_133139609_133142611_133142863_133143591_133143810_133145210_133145414_133146764_133146855_133147235_133147307_133147412_133147587_133147815_133147931_133148096_133148199_133148812_133148886_133149297
transcript_95393.known	chr4	+	2287	2	FSM	ENSMUSG00000046694.7	ENSMUST00000051676.7	2287	2	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAACTGTATCTTTCTCCT	NA	False	NA	13	True	AATAAA	-17	NA	133207442	133215249	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133207875_133213394
transcript_95394.known	chr4	-	1654	2	FSM	ENSMUSG00000056596.9	ENSMUST00000125541.2	1654	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACGTGTGGTTTTAAGG	NA	False	NA	-4	True	AATAAA	-18	NA	133225861	133218410	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133219142_133224938
transcript_95395.nic	chr4	+	2158	4	NIC	ENSMUSG00000037600.17	novel	1708	4	NA	NA	-219	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	23.3666428910958	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5252	False	NA	9	True	NA	NA	NA	133246054	133258101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_133246364_133255050_133256321_133257141_133257217_133257597
transcript_95396.known	chr4	+	1708	4	FSM	ENSMUSG00000037600.17	ENSMUST00000042919.16	1708	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	34.6698716467194	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5500	False	NA	9	True	NA	NA	NA	133246302	133258101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133246364_133255252_133256321_133257141_133257217_133257597
transcript_95397.nic	chr4	+	1970	4	NIC	ENSMUSG00000037600.17	novel	1708	4	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	21.9544984001001	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5499	False	NA	9	True	NA	NA	NA	133246301	133258101	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_133246423_133255050_133256321_133257141_133257217_133257597
transcript_95398.known	chr4	+	1699	4	FSM	ENSMUSG00000037600.17	ENSMUST00000105901.2	1699	4	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	34.198765409815	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACACCTGCCTGGTCAT	5563	False	NA	4	True	NA	NA	NA	133246365	133258096	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133246423_133255252_133256321_133257141_133257217_133257597
transcript_95406.known	chr4	-	1316	8	FSM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	0	0	0	0	multi-exon	FALSE	canonical	3	2323	junction_4	508.87928082108	4827	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTCCCTCGTCTAGAC	4460	False	NA	NA	False	ATTAAA	-19	NA	133273307	133259852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
transcript_95431.known	chr4	+	1132	2	FSM	ENSMUSG00000037583.3	ENSMUST00000042706.3	1132	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTAGTTGCTTGTGGAA	NA	False	NA	NA	False	AATAAA	-17	NA	133280686	133283847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133281277_133283305
transcript_95433.nnic	chr4	+	3496	11	Fusion	ENSMUSG00000028848.14_ENSMUSG00000028850.3	novel	2004	7	NA	NA	-8	-1	multi-exon	FALSE	canonical	3	33	junction_3	55.2959311342164	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTTTTTTTAGTGTGTG	NA	False	NA	40	True	NA	NA	NA	133302047	133319045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_133302522_133305217_133305646_133307096_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
transcript_95435.known	chr4	+	2004	7	FSM	ENSMUSG00000028850.3	ENSMUST00000030662.3	2004	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	9.82626864865578	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGCCTTAGTGAAGCCT	NA	False	NA	13	True	AATAAA	-20	NA	133302055	133311554	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133302522_133305217_133305646_133307096_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929
transcript_95436.known	chr4	+	1367	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_3	14.7394029729837	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTTTTTTAGTGTGTGT	NA	False	NA	41	True	NA	NA	NA	133311672	133319046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
transcript_95438.known	chr4	+	996	5	FSM	ENSMUSG00000028848.14	ENSMUST00000105899.2	996	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	62.5154980784765	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCAAAGGACTTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	133311729	133318801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133312112_133313220_133313378_133315810_133315972_133317077_133317209_133318636
transcript_95440.nnic	chr4	-	1392	2	Genic_Genomic	ENSMUSG00000047281.4	novel	1613	1	NA	NA	129	0	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTTCAGTTATTGGC	9958	False	NA	-10	True	AATAAA	-18	NA	133329350	133327866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_-_133328289_133328380
transcript_95441.known	chr4	-	1613	1	FSM	ENSMUSG00000047281.4	ENSMUST00000057311.4	1613	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	376	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTTCAGTTATTGGC	9829	False	NA	-10	True	AATAAA	-18	NA	133329479	133327866	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133327900_133329500
transcript_95442.known	chr4	-	4580	8	FSM	ENSMUSG00000037553.15	ENSMUST00000084238.5	4580	8	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_4	22.238961949053	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGTGTTTGAGCCACTT	NA	False	NA	NA	False	AATAAA	-28	NA	133360780	133332609	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133336085_133337680_133337794_133340233_133340337_133340949_133340999_133341111_133341250_133342490_133342641_133354510_133354672_133360389
transcript_95447.known	chr4	-	3979	4	FSM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.7248384425711	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTGCGTGG	NA	False	NA	NA	False	NA	NA	NA	133399958	133387697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133390103_133391968_133393091_133397048_133397172_133399629
transcript_9545.known	chr10	-	5784	3	FSM	ENSMUSG00000020091.16	ENSMUST00000020288.15	5784	3	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	2.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGGTGGTTTGTGGTA	NA	False	NA	-1	True	AATAAA	-16	NA	61288440	61264269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_61269608_61270696_61270883_61288180
transcript_95454.known	chr4	-	990	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	36	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTCTTCTTGTTTT	NA	False	NA	-2	True	NA	NA	NA	133399958	133389564	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133390103_133397048_133397172_133399629
transcript_95458.nic	chr4	-	2179	3	ISM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	-10	3676	-10	-1809	5prime_fragment	FALSE	canonical	3	69	junction_1	27.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTCAATACCATCCT	NA	False	NA	NA	False	NA	NA	NA	133399968	133391373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_133393091_133397048_133397172_133399629
transcript_95459.known	chr4	-	653	3	FSM	ENSMUSG00000043257.16	ENSMUST00000151837.2	653	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	56.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTGGCAGGAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	133399958	133396067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133396269_133397048_133397172_133399629
transcript_95470.known	chr4	-	3085	22	FSM	ENSMUSG00000003644.18	ENSMUST00000003741.16	3085	22	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_13	262.602024229159	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCGCCCGCTCTTCCTT	7977	False	NA	-9	True	AATAAA	-14	NA	133615095	133574604	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592710_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133614880
transcript_95472.known	chr4	-	3135	22	FSM	ENSMUSG00000003644.18	ENSMUST00000105894.11	3135	22	0	0	0	0	multi-exon	FALSE	canonical	3	996	junction_6	97.2257582771271	1492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCCGCTCTTCCTTCTGC	7964	False	NA	-5	True	AATAAA	-18	NA	133615108	133574600	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133614880
transcript_9548.known	chr10	+	3216	5	FSM	ENSMUSG00000037151.9	ENSMUST00000049242.9	3216	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	4.84767985741633	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGCTGGTGCTTGGTGTCT	1774	False	NA	3	True	AATAAA	-20	NA	61311579	61418570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61311669_61318114_61318262_61362838_61362989_61383826_61383995_61415908
transcript_95491.known	chr4	-	2296	21	FSM	ENSMUSG00000003644.18	ENSMUST00000137486.3	2296	21	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_20	252.994486105923	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGCAGACGAACTCCTCAG	1548	False	NA	NA	False	NA	NA	NA	133600350	133575362	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133600154
transcript_95521.known	chr4	-	881	6	FSM	ENSMUSG00000003038.16	ENSMUST00000100472.10	881	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	1086.09951661899	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTCTGCCTAAAAGTCA	NA	False	NA	NA	False	TATAAA	-22	NA	133695204	133692330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694070_133694107_133694267_133694313_133695105
transcript_95523.known	chr4	-	711	5	FSM	ENSMUSG00000003038.16	ENSMUST00000130809.8	711	5	0	0	0	0	multi-exon	FALSE	canonical	3	1835	junction_3	507.001664198452	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATTTTTTATCAAGTTT	NA	False	NA	NA	False	NA	NA	NA	133695220	133692796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133694107_133694267_133694313_133695105
transcript_95528.known	chr4	-	3133	9	FSM	ENSMUSG00000012117.14	ENSMUST00000012262.12	3133	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	23.2025725944344	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACAAGGTTTGTGTGGT	NA	False	NA	NA	False	AAAAAG	-21	NA	133728198	133696367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727651_133728035
transcript_95529.known	chr4	-	2038	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105887.8	2038	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	18.0346887968714	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACGAGGACTGAACAGAAC	NA	False	NA	NA	False	AATACA	-19	NA	133728182	133697503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133698568_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728035
transcript_95530.known	chr4	-	890	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105889.4	890	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	21.5928228816892	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTACGCTGAGGAGCGGA	NA	False	NA	NA	False	NA	NA	NA	133728229	133698553	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728177
transcript_9554.known	chr10	+	1364	11	FSM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	0	0	0	0	multi-exon	FALSE	canonical	3	3777	junction_3	128.102654148929	2103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2052	False	NA	15	True	AATAAA	-16	NA	61484330	61509947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
transcript_95542.known	chr4	-	3505	4	FSM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	2.62466929133727	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTCTGATGCTTAGGAC	8250	False	NA	9	True	AATAAA	-30	NA	133746152	133730640	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133733633_133735221_133735407_133745363_133745561_133746021
transcript_95543.known	chr4	+	5578	22	FSM	ENSMUSG00000012123.18	ENSMUST00000227683.2	5578	22	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	46.1690672034849	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGTGGTCTCGTCTCT	NA	False	NA	17	True	NA	NA	NA	133788125	133819815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133788242_133790613_133790684_133792549_133793266_133799740_133802247_133802621_133802670_133802751_133802865_133803009_133803140_133806148_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_95544.nic	chr4	+	2005	15	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	10257	3	-129	0	3prime_fragment	FALSE	canonical	3	24	junction_2	42.4615071781106	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133806019	133819812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_95545.nnic	chr4	+	1913	15	NNC	ENSMUSG00000012123.18	novel	2714	6	NA	NA	745	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	44.8184546537586	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133806974	133819812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_133807152_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_95546.nic	chr4	+	1309	8	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	13696	3	-164	0	3prime_fragment	FALSE	canonical	3	103	junction_1	10.7532624380336	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133809458	133819812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_95548.nic	chr4	+	1045	7	NIC	ENSMUSG00000012123.18	novel	4761	20	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	39.282806530197	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133809609	133819812	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_133809759_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_95554.known	chr4	+	1573	15	FSM	ENSMUSG00000012126.17	ENSMUST00000074690.11	1573	15	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_2	24.8785827078437	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTCACAAGGCTCTC	NA	False	NA	15	True	AATAAA	-15	NA	133829893	133854087	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
transcript_95578.known	chr4	-	743	3	FSM	ENSMUSG00000028843.9	ENSMUST00000030651.9	743	3	0	0	0	0	multi-exon	FALSE	canonical	3	1437	junction_2	42.5	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGGTGTCCGGGTC	9226	False	NA	-5	True	ATTAAA	-22	NA	133856100	133854716	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133855118_133855228_133855397_133855926
transcript_95579.known	chr4	-	518	2	FSM	ENSMUSG00000028843.9	ENSMUST00000105879.2	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGACTGCTTGTGGTGT	9276	False	NA	-12	True	ATTAAA	-15	NA	133856050	133854723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133855118_133855926
transcript_95580.known	chr4	-	368	2	FSM	ENSMUSG00000028843.9	ENSMUST00000136408.2	368	2	0	0	0	0	multi-exon	FALSE	canonical	3	1437	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGACTCAGGTGACTGC	9278	False	NA	NA	False	NA	NA	NA	133856048	133855150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133855397_133855926
transcript_95581.known	chr4	-	3893	14	FSM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_5	49.639648211447	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	133914423	133857168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
transcript_95583.nic	chr4	-	2100	9	ISM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	0	17884	0	4503	5prime_fragment	FALSE	canonical	3	365	junction_5	45.0692175991552	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGAGCAGGGAATGTGT	NA	False	NA	NA	False	AAAAAG	-10	NA	133914423	133875052	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
transcript_95584.nic	chr4	-	1929	9	ISM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	0	18055	0	4332	5prime_fragment	FALSE	canonical	3	365	junction_5	45.0692175991552	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGAGCTTTGTGTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	133914423	133875223	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
transcript_95586.known	chr4	-	2468	21	FSM	ENSMUSG00000028841.15	ENSMUST00000030645.9	2468	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.41816045786875	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGTGTCTTTGCTTTAG	2906	False	NA	NA	False	AATAAA	-21	NA	133965710	133955351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133955896_133956249_133956432_133956516_133956602_133956692_133956755_133956896_133956974_133957490_133957563_133957722_133957797_133959351_133959525_133959948_133959980_133960057_133960165_133960304_133960364_133960450_133960513_133960596_133960699_133961012_133961076_133961178_133961239_133961799_133961905_133961980_133962023_133962419_133962505_133963181_133963364_133963470_133963629_133965567
transcript_95591.known	chr4	-	1994	3	FSM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_2	27	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTTATCTCTTGCTTT	7668	False	NA	7	True	NA	NA	NA	133972903	133970599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133972242_133972335_133972399_133972614
transcript_95594.known	chr4	-	2020	2	FSM	ENSMUSG00000028840.11	ENSMUST00000129183.2	2020	2	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATCAGTGTGCATGTAT	7718	False	NA	-11	True	NA	NA	NA	133972853	133970617	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133972399_133972614
transcript_95597.known	chr4	-	1226	2	FSM	ENSMUSG00000050105.6	ENSMUST00000060050.6	1226	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGGACCATGAGTTTGG	3414	False	NA	-23	True	AATAAA	-18	NA	133981417	133978420	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_133979570_133981340
transcript_95598.known	chr4	-	4509	3	FSM	ENSMUSG00000050890.16	ENSMUST00000105876.9	4509	3	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	10	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGAAAGTTCTCTTGCT	4291	False	NA	NA	False	AATAAA	-18	NA	134014564	134002313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134006428_134011556_134011859_134014471
transcript_95599.known	chr4	-	4686	3	FSM	ENSMUSG00000050890.16	ENSMUST00000061234.14	4686	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	24	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAAAGTTCTCTTGCTA	3649	False	NA	NA	False	AATAAA	-19	NA	134015206	134002312	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134006428_134011556_134011859_134014937
transcript_95609.known	chr4	-	1039	2	FSM	ENSMUSG00000050890.16	ENSMUST00000142504.2	1039	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACCCAACAA	4319	False	NA	NA	False	ATTAAA	-11	NA	134014536	134010884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134011859_134014471
transcript_95611.known	chr4	-	573	3	FSM	ENSMUSG00000050890.16	ENSMUST00000127857.2	573	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAAAGACTTACTAA	4294	False	NA	NA	False	NA	NA	NA	134014561	134006671	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134006853_134011556_134011859_134014471
transcript_95612.known	chr4	+	1886	9	FSM	ENSMUSG00000028834.14	ENSMUST00000105875.8	1886	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	6.8545149354276	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTATGAAAGAAGTGTGA	NA	False	NA	NA	False	AATAAA	-28	NA	134042430	134056940	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134042694_134043697_134043871_134046942_134047112_134048493_134048590_134050314_134050549_134052355_134052379_134052894_134053020_134055015_134055094_134056215
transcript_95613.known	chr4	+	1855	9	FSM	ENSMUSG00000028834.14	ENSMUST00000030638.7	1855	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	9.40661336507459	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAATGCTCTTTTCCTG	NA	False	NA	NA	False	AATAAA	-8	NA	134042432	134056920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134042694_134043697_134043871_134046942_134047112_134048493_134048590_134050314_134050549_134052355_134052379_134052894_134053020_134055015_134055085_134056215
transcript_95617.known	chr4	+	3153	8	FSM	ENSMUSG00000028836.15	ENSMUST00000105874.9	3153	8	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_4	12.5324069711207	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTTGCCTTGCAGA	2081	False	NA	16	True	AATAAA	-21	NA	134070516	134081795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134070648_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
transcript_95621.known	chr4	+	3102	8	FSM	ENSMUSG00000028836.15	ENSMUST00000105872.8	3102	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	95.9345014654716	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTATGAGTGTTTTGCC	2341	False	NA	9	True	AATAAA	-14	NA	134070776	134081788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134070864_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
transcript_95624.known	chr4	+	1224	7	FSM	ENSMUSG00000028836.15	ENSMUST00000105873.8	1224	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	102.834278763887	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCAGATGAGGCCCCACT	2056	False	NA	NA	False	GGGGCT	-35	NA	134070491	134079988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134070648_134071318_134071528_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
transcript_95627.nnic	chr4	-	2982	12	NNC	ENSMUSG00000028838.12	novel	4126	11	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	14.4032824541681	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGGGCTATAAATACGCT	6998	False	NA	0	True	AATAAA	-23	NA	134099894	134083682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_134085142_134085288_134085458_134086395_134086557_134087059_134087147_134087842_134087933_134089611_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268_134098623_134099791
transcript_95628.nnic	chr4	-	3410	12	NNC	ENSMUSG00000028838.12	novel	4126	11	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_11	13.8879816048932	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGGGCTATAAATACGCT	6997	False	NA	0	True	AATAAA	-23	NA	134099895	134083682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_134085142_134085288_134085458_134086395_134086557_134087059_134087147_134087842_134087933_134089611_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268_134099050_134099791
transcript_95631.known	chr4	-	4126	11	FSM	ENSMUSG00000028838.12	ENSMUST00000030643.3	4126	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	6.57951365983839	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGGGCTATAAATACGCT	7023	False	NA	0	True	AATAAA	-23	NA	134099869	134083682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134085142_134085288_134085458_134086395_134086557_134087059_134087147_134087842_134087933_134089611_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268
transcript_95642.known	chr4	+	2248	11	FSM	ENSMUSG00000037366.15	ENSMUST00000105869.9	2248	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	4.79687398208458	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGAAACTATTAACAGAGC	1779	False	NA	NA	False	NA	NA	NA	134123630	134153803	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134123736_134130280_134130416_134131403_134131555_134132316_134132414_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
transcript_95651.known	chr4	+	802	5	FSM	ENSMUSG00000028832.12	ENSMUST00000105867.8	802	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	432.634011030108	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGGCTAGTTCTGTATT	NA	False	NA	NA	False	NA	NA	NA	134195719	134200975	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200632
transcript_95656.known	chr4	+	3550	3	FSM	ENSMUSG00000037348.16	ENSMUST00000095074.4	3550	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCCTTGATTCGATTTTT	NA	False	NA	NA	False	NA	NA	NA	134224314	134237546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134224348_134227910_134227995_134234113
transcript_95657.known	chr4	+	2351	2	FSM	ENSMUSG00000037348.16	ENSMUST00000081525.4	2351	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGTTTTGACTCCTGT	NA	False	NA	19	True	AATAAA	-20	NA	134224007	134236124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134224348_134234113
transcript_9566.known	chr10	+	897	8	FSM	ENSMUSG00000020088.11	ENSMUST00000219506.2	897	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	587.872053273846	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCCAGTGGTGACATGTG	NA	False	NA	121	True	NA	NA	NA	61516143	61527317	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61516193_61520012_61520111_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
transcript_95662.known	chr4	+	1275	3	FSM	ENSMUSG00000078521.3	ENSMUST00000105866.3	1275	3	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_2	7.5	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGGTGTCGTGCTTCC	NA	False	NA	20	True	AATAAA	-20	NA	134238309	134251238	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134238481_134248782_134248913_134250264
transcript_95666.nic	chr4	-	2011	7	NIC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	192.098643641461	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTGAATTTTTTTCTTG	NA	False	NA	-7	True	ATTAAA	-16	NA	134262402	134252874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262215
transcript_95667.known	chr4	-	2025	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTTCATCTCTGAGT	NA	False	NA	7	True	ATTAAA	-30	NA	134262579	134252860	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
transcript_95669.known	chr4	-	1969	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTTCTTGGTTCATC	NA	False	NA	0	True	ATTAAA	-23	NA	134262698	134252867	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
transcript_95672.nic	chr4	-	1590	7	NIC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	47	-541	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	192.098643641461	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTCTCCATAATTG	NA	False	NA	-2	True	AATGAA	-18	NA	134262522	134253415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262215
transcript_95675.nnic	chr4	-	1363	7	NNC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	0	-541	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	178.015604809117	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTCTCCATAATTG	NA	False	NA	-2	True	AATGAA	-18	NA	134262579	134253415	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262499
transcript_9568.known	chr10	+	2613	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	0	0	0	0	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516088	61529076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
transcript_95686.known	chr4	-	925	6	FSM	ENSMUSG00000046671.19	ENSMUST00000146808.2	925	6	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_5	112.150969679268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCATCTCTCTGTCCAAG	NA	False	NA	NA	False	NA	NA	NA	134262698	134256487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
transcript_95690.known	chr4	-	4715	12	FSM	ENSMUSG00000037306.14	ENSMUST00000054096.13	4715	12	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	6.8947219003122	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGCTGTATAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	134431601	134289000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134291144_134291815_134291932_134293138_134293312_134296206_134296427_134303250_134303367_134305596_134305691_134308081_134308200_134311610_134311706_134318666_134318748_134320560_134320677_134367597_134367695_134430255
transcript_95694.known	chr4	-	6549	9	FSM	ENSMUSG00000037295.8	ENSMUST00000037828.8	6549	9	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_1	8.8175960442742	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	134495335	134468864	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134474511_134475592_134475628_134476647_134476779_134477269_134477354_134477692_134477766_134482503_134482619_134484651_134484765_134486229_134486373_134495126
transcript_957.nic	chr1	-	2588	7	NIC	ENSMUSG00000001143.14	novel	3378	8	NA	NA	0	-3	intron_retention	FALSE	canonical	3	153	junction_5	19.8997487421324	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGAGTTCTGGCTCAGTG	NA	False	NA	-6	True	CATAAA	-18	NA	36484352	36462269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_9570.known	chr10	+	2286	4	FSM	ENSMUSG00000020087.6	ENSMUST00000020284.5	2286	4	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	6.12825877028341	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTTGGCTGCTTTT	NA	False	NA	21	True	AATAAA	-24	NA	61531292	61538552	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61532522_61534076_61534208_61535221_61535408_61537812
transcript_9571.known	chr10	+	512	4	FSM	ENSMUSG00000020087.6	ENSMUST00000218280.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	128.489515352637	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGCAAGCTCTGAAGCTA	NA	False	NA	NA	False	NA	NA	NA	61532488	61538015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61532522_61534076_61534208_61535262_61535408_61537812
transcript_95710.known	chr4	-	3826	11	FSM	ENSMUSG00000028826.15	ENSMUST00000030628.15	3826	11	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	24.8628236529965	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTCCTGCCTTTTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	134580656	134530069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134531876_134533827_134534003_134536910_134537032_134538446_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134563633_134563761_134565159_134565302_134580348
transcript_95719.nic	chr4	-	1638	8	ISM	ENSMUSG00000028826.15	ENSMUST00000030628.15	3826	11	28	8435	0	0	5prime_fragment	FALSE	canonical	3	158	junction_5	21.2401237553564	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAGTTAGAAGAAGCC	NA	False	NA	NA	False	NA	NA	NA	134580628	134538504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134563633_134563761_134565159_134565302_134580348
transcript_9572.known	chr10	+	595	3	FSM	ENSMUSG00000020087.6	ENSMUST00000218135.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	134.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACCTGGGTGGCCTCCGA	NA	False	NA	NA	False	NA	NA	NA	61532171	61537926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61532522_61534076_61534208_61537812
transcript_95720.nic	chr4	-	1602	8	ISM	ENSMUSG00000028826.15	ENSMUST00000030628.15	3826	11	-30	8529	-30	-94	5prime_fragment	FALSE	canonical	3	158	junction_5	21.2401237553564	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAGCAGAATATCAGCCA	NA	False	NA	NA	False	AATGAA	-8	NA	134580686	134538598	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134563633_134563761_134565159_134565302_134580348
transcript_95724.known	chr4	-	1011	2	FSM	ENSMUSG00000028826.15	ENSMUST00000136113.2	1011	2	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAAAATAAAACAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	134580628	134564570	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134565302_134580348
transcript_95726.nic	chr4	+	1222	8	ISM	ENSMUSG00000028825.8	ENSMUST00000030627.8	1514	10	15249	0	-25	0	3prime_fragment	FALSE	canonical	3	9	junction_1	5.80288457473997	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAAGGTCTCTTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	134607095	134623483	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_134607352_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
transcript_9573.known	chr10	+	306	3	FSM	ENSMUSG00000020087.6	ENSMUST00000219768.2	306	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	138	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACAACACGGGAGCCACC	NA	False	NA	NA	False	NA	NA	NA	61532425	61537836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61532522_61535221_61535408_61537812
transcript_95730.known	chr4	-	1204	7	FSM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_1	61.5938759582116	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	False	NA	-20	True	ATTAAA	-19	NA	134642335	134625159	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
transcript_95731.known	chr4	-	719	7	FSM	ENSMUSG00000028822.12	ENSMUST00000105863.2	719	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	233.0748568355	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCACCCTGCTCACCC	NA	False	NA	NA	False	NA	NA	NA	134642326	134625701	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640573_134642199
transcript_95741.known	chr4	+	2151	6	FSM	ENSMUSG00000037266.19	ENSMUST00000145364.8	2151	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	379.006385170488	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650955	134654683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134653133_134653336_134654130_134654241
transcript_95747.nic	chr4	+	2470	5	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	-62	0	intron_retention	FALSE	canonical	3	141	junction_3	314.200075588788	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650840	134654683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134654130_134654241
transcript_95748.nnic	chr4	+	2221	5	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	-62	0	intron_retention	FALSE	canonical	3	19	junction_3	366.739945329112	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650840	134654683	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653336_134654130_134654241
transcript_95749.known	chr4	+	1749	5	FSM	ENSMUSG00000037266.19	ENSMUST00000078084.7	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_3	305.166348079207	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTAGTTGTGAATGGTAG	NA	False	NA	9	True	NA	NA	NA	134650902	134654982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134654045_134654130_134654241
transcript_9575.known	chr10	+	1512	10	FSM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	38.6497408676411	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTGGAGCTTTTATTTT	NA	False	NA	8	True	AATAAA	-19	NA	61551041	61574432	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574177
transcript_9576.known	chr10	+	1442	10	FSM	ENSMUSG00000020085.16	ENSMUST00000067857.11	1442	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	41.9205597927	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCGATCCTCCTCCTTCG	NA	False	NA	NA	False	AATAAA	-21	NA	61551089	61575039	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
transcript_95763.known	chr4	+	3051	4	FSM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	0	0	0	0	multi-exon	FALSE	canonical	3	813	junction_2	40.8493165997507	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTAGTTGTGAATGGTAG	NA	False	NA	9	True	NA	NA	NA	134650902	134654982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134654130_134654241
transcript_95770.known	chr4	+	1369	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGTCTGTAACTTAAACA	NA	False	NA	NA	False	AATAAA	-24	NA	134658208	134664859	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
transcript_95776.known	chr4	+	816	3	FSM	ENSMUSG00000028821.9	ENSMUST00000156334.8	816	3	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_1	40	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACAGCTGGCCTGGGCCTC	NA	False	NA	NA	False	NA	NA	NA	134658212	134662360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_134658330_134658490_134658596_134661766
transcript_95781.known	chr4	-	4119	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-19	NA	135000125	134941279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
transcript_95798.known	chr4	-	3152	18	FSM	ENSMUSG00000028809.17	ENSMUST00000136342.9	3152	18	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_5	197.323579826916	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGTTTGACTATTGTTGG	NA	False	NA	-16	True	TTTAAA	-4	NA	135080555	135048404	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_9580.known	chr10	+	3086	9	FSM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	25.5706741209535	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACGCTGGAGCTTT	NA	False	NA	2	True	AATAAA	-13	NA	61551101	61574426	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361
transcript_95809.known	chr4	-	3797	17	FSM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_5	249.404846271579	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACTCACATTTATTCG	NA	False	NA	0	True	AATAAA	-19	NA	135080632	135047794	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_95813.known	chr4	-	2940	17	FSM	ENSMUSG00000028809.17	ENSMUST00000030613.11	2940	17	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_4	198.310008257274	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCCCATAAGGGACAAAAG	NA	False	NA	NA	False	TTTAAA	-14	NA	135080447	135049343	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_95839.nnic	chr4	-	1048	8	NNC	ENSMUSG00000028809.17	novel	3740	18	NA	NA	0	1441	at_least_one_novel_splicesite	FALSE	canonical	3	160	junction_5	510.526898689691	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTCCAAAAAGGAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	135080555	135068280	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135073626_135073757_135074045_135074169_135074425_135074516_135080407
transcript_9585.nic	chr10	+	714	5	ISM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	-7	10343	-7	389	5prime_fragment	FALSE	canonical	3	116	junction_1	28.6050694807756	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTTGTTTGATTGTT	NA	False	NA	NA	False	AAAAAG	-13	NA	61551034	61564089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907
transcript_95850.known	chr4	-	2847	4	FSM	ENSMUSG00000028809.17	ENSMUST00000134854.8	2847	4	0	0	0	0	multi-exon	FALSE	canonical	3	1232	junction_3	55.3955473541571	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGACAAAG	NA	False	NA	NA	False	NA	NA	NA	135080462	135070947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135071291_135071809_135074169_135074425_135074516_135080407
transcript_95857.known	chr4	-	619	6	FSM	ENSMUSG00000028809.17	ENSMUST00000131373.8	619	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	490.131655782403	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGAAGGACTCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	135080453	135069721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135069795_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_95860.known	chr4	-	2000	6	FSM	ENSMUSG00000043924.17	ENSMUST00000105860.9	2000	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	9.45727233402951	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	5698	False	NA	0	True	ATTAAA	-17	NA	135125532	135096886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135098022_135099187_135099273_135104301_135104385_135107432_135107604_135107962_135108150_135125193
transcript_95864.known	chr4	-	1616	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105858.8	1616	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	8.87059749960509	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	7519	False	NA	0	True	ATTAAA	-17	NA	135112966	135096886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135098022_135099187_135099273_135104301_135104385_135107962_135108150_135112840
transcript_95865.nic	chr4	-	1542	5	NIC	ENSMUSG00000043924.17	novel	2000	6	NA	NA	-5	-297	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	5.8309518948453	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACAGTATTCTTCAAA	5687	False	NA	NA	False	NA	NA	NA	135125543	135097184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_135098022_135099187_135099273_135104301_135104385_135107962_135108150_135125193
transcript_95867.known	chr4	-	1801	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105859.8	1801	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	5.49431524395898	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	5729	False	NA	0	True	ATTAAA	-17	NA	135125501	135096886	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135098022_135099187_135099273_135104301_135104388_135107962_135108150_135125193
transcript_95869.nic	chr4	-	1033	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	31.244999599936	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATTGAGCAGTCTCTTC	NA	False	NA	-4	True	AATAAA	-22	NA	135161197	135139618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_135139802_135145690_135145863_135147556_135147731_135152524_135152754_135160922
transcript_9587.known	chr10	-	2175	9	FSM	ENSMUSG00000020086.7	ENSMUST00000020283.5	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	26.0813031691286	478	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGCGTCTTTCTTATA	NA	False	NA	-26	True	NA	NA	NA	61619926	61574443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561
transcript_95870.known	chr4	-	5111	5	FSM	ENSMUSG00000059713.13	ENSMUST00000030606.14	5111	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	34.9311823447189	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATTGAGCAGTCTCTTC	NA	False	NA	-4	True	AATAAA	-22	NA	135161164	135139618	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135143910_135145690_135145863_135147556_135147731_135152524_135152757_135160922
transcript_95873.known	chr4	-	724	4	FSM	ENSMUSG00000059713.13	ENSMUST00000156635.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	5.43650214343336	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAGATGCGATGCCAGTG	NA	False	NA	NA	False	NA	NA	NA	135161134	135145753	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135145863_135147556_135147731_135152524_135152754_135160922
transcript_95875.nic	chr4	-	5113	13	NIC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	-47	-2	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	20.9103576142436	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTCGGGTCCTGTGTTGC	4258	False	NA	-5	True	ATTAAA	-20	NA	135221864	135176204	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_135179884_135182183_135182216_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
transcript_95877.nic	chr4	-	2475	13	NIC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	-26	375	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	20.9103576142436	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCAGCTTTCTTCCTG	4279	False	NA	-1	True	NA	NA	NA	135221843	135178821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_135179884_135182183_135182216_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
transcript_95885.known	chr4	-	5153	12	FSM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_10	9.94031776933574	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGGGTCCTGTGTTGCAC	4188	False	NA	-3	True	ATTAAA	-22	NA	135221934	135176202	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
transcript_95897.nic	chr4	+	1932	4	ISM	ENSMUSG00000028801.15	ENSMUST00000063707.3	2380	9	29093	104	29093	-104	3prime_fragment	FALSE	canonical	3	11	junction_1	4.02768199119819	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAAGCCGGGTTCTTTGTG	NA	False	NA	7	True	ATTAAA	-19	NA	135252390	135265010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_135252843_135256802_135256969_135260949_135261141_135263887
transcript_95901.known	chr4	-	2789	16	FSM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_6	62.4956531821747	309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTTTTCATGCGCTTC	NA	False	NA	-2	True	AATAAA	-20	NA	135300941	135269198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279194_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
transcript_95909.known	chr4	+	1002	2	FSM	ENSMUSG00000086788.3	ENSMUST00000134416.2	1002	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCCTGTGGTGTGAGCA	NA	False	NA	NA	False	TATAAA	-23	NA	135354084	135355796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135354357_135355066
transcript_95910.known	chr4	+	4182	7	FSM	ENSMUSG00000062157.7	ENSMUST00000074408.7	4182	7	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_5	3.02305952453618	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAATGTGCACGCAGTTGT	NA	False	NA	7	True	AATAAA	-21	NA	135413597	135435492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135413911_135417832_135417957_135426100_135426283_135428538_135428682_135431020_135431181_135431479_135431611_135432363
transcript_95916.nic	chr4	+	4686	28	ISM	ENSMUSG00000037139.16	ENSMUST00000105854.2	5575	37	15678	0	15678	0	3prime_fragment	FALSE	canonical	2	3	junction_8	2.88793906512858	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGCACCCGTGGTCTCTG	6706	False	NA	NA	False	AATAAA	-29	NA	135502703	135542875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_135503018_135503645_135503788_135505347_135505548_135506663_135506718_135507110_135507239_135510325_135510510_135513124_135513300_135514709_135514832_135515205_135515394_135515598_135515726_135516844_135517024_135522392_135522508_135523591_135523749_135524274_135524385_135524764_135524810_135525605_135525743_135528312_135528458_135528652_135528713_135529026_135529095_135530518_135530630_135533348_135533437_135534194_135534234_135534479_135534589_135536106_135536271_135538059_135538097_135538245_135538269_135539754_135539811_135541466
transcript_95931.nnic	chr4	+	3970	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-487	0	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_3	533.493960186576	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	3834	False	NA	NA	False	AATAAA	-17	NA	135582570	135593126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135591039
transcript_95936.known	chr4	+	3058	6	FSM	ENSMUSG00000028676.18	ENSMUST00000105853.10	3058	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	578.7306800231	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4321	False	NA	NA	False	AATAAA	-17	NA	135583057	135593126	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590833_135590888_135591039
transcript_95938.known	chr4	+	3754	6	FSM	ENSMUSG00000028676.18	ENSMUST00000126641.2	3754	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	623.730198082472	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTTTTCTGTAGACT	4321	False	NA	23	True	AATAAA	-28	NA	135583057	135597219	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590833_135590888_135594436
transcript_95946.known	chr4	+	717	3	FSM	ENSMUSG00000028676.18	ENSMUST00000129718.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	671.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTTTATTTTATTTT	4706	False	NA	NA	False	NA	NA	NA	135583442	135586542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135583603_135585615_135585783_135586152
transcript_95947.nnic	chr4	-	2117	3	NNC	ENSMUSG00000028675.13	novel	1919	3	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	182.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATTCTTTTTATGTAAG	NA	False	NA	-2	True	AATAAA	-27	NA	135600949	135598228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_135599766_135600205_135600411_135600574
transcript_95948.known	chr4	-	630	3	FSM	ENSMUSG00000028675.13	ENSMUST00000142585.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	185.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTGCTCATAAGAAAAAGG	NA	False	NA	NA	False	AATAGA	-36	NA	135600881	135599634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135599766_135600205_135600411_135600587
transcript_95949.known	chr4	-	1919	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	18.5	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATTCTTTTTATGTAAG	NA	False	NA	-2	True	AATAAA	-27	NA	135601161	135598228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135599766_135600205_135600411_135600984
transcript_95952.known	chr4	+	2525	8	FSM	ENSMUSG00000028673.11	ENSMUST00000030434.5	2525	8	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	34.7786000351964	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTTTGTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135648045	135667622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135662192_135664233_135664334_135666384
transcript_95960.nnic	chr4	+	2765	16	Fusion	ENSMUSG00000028673.11_ENSMUSG00000028672.14	novel	2525	8	NA	NA	-21	0	multi-exon	FALSE	canonical	2	13	junction_8	263.348404632005	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAACGTGTGTTTATGGG	NA	False	NA	NA	False	ATTAAA	-23	NA	135648024	135689928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135662192_135664233_135664334_135666384_135666517_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287_135687477_135688093_135688220_135689419
transcript_95963.known	chr4	+	1418	9	FSM	ENSMUSG00000028672.14	ENSMUST00000030432.8	1418	9	0	0	0	0	multi-exon	FALSE	canonical	3	659	junction_3	79.965617611571	482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAACGTGTGTTTATGGG	NA	False	NA	NA	False	ATTAAA	-23	NA	135673758	135689928	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287_135687477_135688093_135688220_135689419
transcript_95975.known	chr4	+	1430	11	FSM	ENSMUSG00000028671.17	ENSMUST00000102541.10	1430	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	18.7712546197637	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATTCTCACAGATGGC	4562	False	NA	11	True	AATAAA	-19	NA	135691037	135695489	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135691100_135692644_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
transcript_95982.known	chr4	-	1626	10	FSM	ENSMUSG00000028670.15	ENSMUST00000067567.5	1626	10	0	0	0	0	multi-exon	TRUE	canonical	3	407	junction_1	24.7476149243608	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699937	135695534	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
transcript_95983.known	chr4	-	1119	9	FSM	ENSMUSG00000028670.15	ENSMUST00000145350.2	1119	9	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	24.7474746186353	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGCTGTAGGCGGCGGG	NA	False	NA	NA	False	NA	NA	NA	135699899	135696074	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135696379_135696454_135696629_135696738_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
transcript_95985.nic	chr4	-	1725	9	NIC	ENSMUSG00000028670.15	novel	1626	10	NA	NA	-29	-6	intron_retention	FALSE	canonical	3	428	junction_2	20.3127884594902	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCAGGGCTCCCTTATGT	NA	False	NA	-17	True	ATTAAA	-14	NA	135699966	135695540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
transcript_95991.known	chr4	-	1700	6	FSM	ENSMUSG00000028669.16	ENSMUST00000105851.9	1700	6	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_4	31.7893063780888	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAGGTTCAGCCTCTGC	2115	False	NA	-3	True	AATAAA	-19	NA	135714575	135702770	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135703808_135704459_135704569_135706107_135706213_135713251_135713330_135713702_135713747_135714248
transcript_95992.known	chr4	-	4708	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAGCCTTTCCTCAT	7704	False	NA	-1	True	AATAAA	-17	NA	135749074	135730678	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
transcript_95998.nic	chr4	-	1406	4	ISM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	-21	7033	-21	-7033	5prime_fragment	FALSE	canonical	3	140	junction_3	7.93025150224688	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGGTTGTGAAAACGT	7683	False	NA	NA	False	AAGAAA	-3	NA	135749095	135737711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_135738720_135740180_135740288_135741710_135741768_135748861
transcript_96000.known	chr4	-	833	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGGTTTGGATTTGGTTG	NA	False	NA	-59	True	NA	NA	NA	135780704	135777041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
transcript_96007.known	chr4	-	397	4	FSM	ENSMUSG00000059291.16	ENSMUST00000128733.2	397	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	4326.60739558786	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAACACATTGACCTGG	NA	False	NA	NA	False	NA	NA	NA	135780739	135778551	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135778614_135778924_135779028_135779877_135780029_135780658
transcript_96008.known	chr4	-	807	5	FSM	ENSMUSG00000059291.16	ENSMUST00000125726.8	807	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	4361.44284469027	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTGATCCAAAAAGCT	NA	False	NA	-47	True	NA	NA	NA	135780307	135777300	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877
transcript_96009.known	chr4	+	1278	3	FSM	ENSMUSG00000007872.4	ENSMUST00000008016.3	1278	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	1.5	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGACATCTTGCGCCAC	405	False	NA	11	True	AATAAA	-19	NA	135870807	135872703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135871490_135871604_135871688_135872190
transcript_96010.known	chr4	+	4739	7	FSM	ENSMUSG00000018983.10	ENSMUST00000061721.6	4739	7	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_4	12.2395079784914	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTGGTGTGATTTC	1056	False	NA	16	True	ATTAAA	-20	NA	135899704	135923368	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135900350_135905746_135905853_135907668_135907889_135908596_135908756_135911733_135911849_135914109_135914303_135920067
transcript_96021.known	chr4	+	4225	25	FSM	ENSMUSG00000036995.8	ENSMUST00000047526.8	4225	25	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	6.55532014643238	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTCTGGTGATTGGAAAG	1322	False	NA	NA	False	NA	NA	NA	135933675	135972527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135933959_135954718_135954792_135954873_135955020_135955709_135955785_135956710_135956761_135960549_135960662_135960874_135960961_135961334_135961411_135961638_135961726_135961894_135962005_135963685_135963756_135964007_135964096_135965486_135965536_135965642_135965831_135965909_135966044_135966202_135966298_135966491_135966670_135967428_135967515_135967661_135967778_135968316_135968385_135968465_135968577_135968683_135968880_135969966_135970193_135970758_135970853_135971099
transcript_96034.known	chr4	+	1251	11	FSM	ENSMUSG00000001604.15	ENSMUST00000102533.11	1251	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	231.929816970565	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6603	False	NA	15	True	AATAAA	-26	NA	135975262	136002209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
transcript_96039.nnic	chr4	+	1322	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	307.780457469281	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6574	False	NA	15	True	AATAAA	-26	NA	135975233	136002209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_135975471_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
transcript_96043.nic	chr4	+	1331	7	ISM	ENSMUSG00000001604.15	ENSMUST00000102533.11	1251	11	-36	9433	-36	981	5prime_fragment	FALSE	canonical	3	647	junction_4	43.1972221329104	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGTTGTGGCTTGCCAGA	6567	False	NA	NA	False	TATAAA	-32	NA	135975226	135992776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182
transcript_96046.nic	chr4	+	415	4	ISM	ENSMUSG00000001604.15	ENSMUST00000102533.11	1251	11	-36	19705	-36	-9291	5prime_fragment	FALSE	canonical	3	727	junction_1	22.4845626053867	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGAAGAAGGAGAAAGGACT	6567	False	NA	NA	False	AAGAAA	-9	NA	135975226	135982504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460
transcript_96050.nic	chr4	+	371	3	ISM	ENSMUSG00000001604.15	ENSMUST00000143942.2	626	6	-57	9914	-36	-9914	5prime_fragment	FALSE	canonical	3	727	junction_1	27.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGGGGGCAAGACCGA	6567	False	NA	NA	False	ATTAAA	-20	NA	135975226	135981881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_135975429_135981056_135981120_135981775
transcript_96054.known	chr4	+	791	3	FSM	ENSMUSG00000051351.15	ENSMUST00000130658.2	791	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTCAGACCTCAATCGCC	NA	False	NA	NA	False	NA	NA	NA	136013414	136017559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_136013793_136014499_136014627_136017273
transcript_96055.known	chr4	+	4639	3	FSM	ENSMUSG00000051351.15	ENSMUST00000069195.5	4639	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTATGCTGTGCAGGTTG	NA	False	NA	107	True	ATTAAA	-21	NA	136013377	136021253	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_136013793_136014382_136014627_136017273
transcript_96061.known	chr4	+	2683	11	FSM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	130.381325349914	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATTTCAAATTCAATTGT	NA	False	NA	32	True	AATAAA	-26	NA	136038278	136067992	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
transcript_96063.known	chr4	+	21452	11	FSM	ENSMUSG00000066037.15	ENSMUST00000148843.10	21452	11	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	138.01771625411	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTGTTGTGCCTCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	136038278	136086758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_136038401_136041397_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
transcript_96065.known	chr4	+	2647	10	FSM	ENSMUSG00000066037.15	ENSMUST00000084219.12	2647	10	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	166.354225660371	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCATTGATTGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	136038335	136068174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_136038401_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
transcript_96066.nic	chr4	+	1383	10	ISM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	-57	1478	-31	-70	5prime_fragment	FALSE	canonical	3	160	junction_1	131.584456284937	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAGGGGAAGAAATTGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	136038221	136066514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486
transcript_96069.nic	chr4	+	1374	10	ISM	ENSMUSG00000066037.15	ENSMUST00000148843.10	21452	11	-45	20244	-19	-70	5prime_fragment	FALSE	canonical	3	130	junction_1	139.667683192624	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAGGGGAAGAAATTGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	136038233	136066514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_136038401_136041397_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486
transcript_9607.nnic	chr10	-	2761	37	NIC	ENSMUSG00000058806.16	novel	3162	41	NA	NA	-48	-263	combination_of_known_splicesites	FALSE	canonical	0	0	junction_34	5.85544750058429	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTGTCTGTGCGTCTGC	NA	False	NA	NA	False	TATAAA	-16	NA	61814935	61674277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_61674488_61675856_61675896_61679346_61679434_61684954_61684991_61685935_61685990_61686890_61686945_61692116_61692198_61692560_61692588_61693366_61693409_61696218_61696264_61697793_61697893_61698406_61698551_61698822_61698868_61699719_61699783_61702169_61702194_61703230_61703300_61703609_61703655_61705302_61705357_61705939_61706027_61707068_61707114_61709772_61709800_61710516_61710550_61712046_61712092_61720454_61720491_61721466_61721494_61723027_61723136_61728734_61728762_61729693_61729721_61729812_61729840_61731112_61731140_61732124_61732152_61732917_61732954_61738868_61738920_61747485_61747513_61755867_61755876_61797067_61797138_61814127
transcript_96073.nic	chr4	+	1163	9	ISM	ENSMUSG00000066037.15	ENSMUST00000131671.8	2543	10	23	1478	-3	-70	5prime_fragment	FALSE	canonical	3	289	junction_1	98.149678425352	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAGGGGAAGAAATTGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	136038275	136066514	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_136038401_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486
transcript_96084.known	chr4	+	859	7	FSM	ENSMUSG00000066037.15	ENSMUST00000145282.8	859	7	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	205.839271169414	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTGGAAGAGTTCAGTAA	NA	False	NA	NA	False	AATAAA	-13	NA	136038338	136056784	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_136038401_136041400_136041567_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676
transcript_96096.known	chr4	-	3028	20	FSM	ENSMUSG00000036940.16	ENSMUST00000105847.8	3028	20	0	0	0	0	multi-exon	FALSE	canonical	3	991	junction_18	209.393504887799	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTTAATTGTGTGTG	NA	False	NA	-9	True	AATAAA	-26	NA	136329998	136277854	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_136278345_136279182_136279330_136279771_136279900_136281106_136281222_136281523_136281712_136282483_136282617_136284952_136285065_136285808_136285883_136286483_136286619_136287633_136287725_136288328_136288472_136295883_136295979_136297768_136297851_136299528_136299636_136300383_136300477_136301335_136301415_136304381_136304516_136309350_136309411_136320275_136320442_136329542
transcript_96098.known	chr4	-	3008	19	FSM	ENSMUSG00000036940.16	ENSMUST00000116273.9	3008	19	0	0	0	0	multi-exon	FALSE	canonical	3	907	junction_17	208.707545398275	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAATTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-30	NA	136330034	136277850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_136278345_136279182_136279330_136279771_136279900_136281106_136281222_136281523_136281712_136282483_136282617_136284952_136285065_136285808_136285883_136286483_136286619_136287633_136287725_136288328_136288472_136295883_136295979_136297768_136297851_136299528_136299636_136300383_136300477_136301335_136301415_136304381_136304516_136320275_136320442_136329542
transcript_961.nic	chr1	-	1451	6	ISM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	0	5405	0	922	5prime_fragment	FALSE	canonical	3	153	junction_4	20.8480214888608	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGTCATTAATGTTG	NA	False	NA	NA	False	TATAAA	-25	NA	36484352	36466550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr1_-_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_96124.known	chr4	+	7526	5	FSM	ENSMUSG00000001089.15	ENSMUST00000170102.8	7526	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	50.5488624995657	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCCTTTGAGTCAGTGA	4157	False	NA	11	True	AATAAA	-17	NA	136197071	136276626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_136197162_136248651_136248755_136266435_136266528_136267666_136270830_136272548
transcript_96126.known	chr4	+	7438	4	FSM	ENSMUSG00000001089.15	ENSMUST00000105849.9	7438	4	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	34.7658836600865	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGAGTCAGTGATGCC	4157	False	NA	15	True	AATAAA	-21	NA	136197071	136276630	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_136197162_136248651_136248755_136267666_136270830_136272548
transcript_96127.nic	chr4	-	668	2	ISM	ENSMUSG00000036940.16	ENSMUST00000116273.9	3008	19	-102	42517	-102	-34525	5prime_fragment	FALSE	canonical	3	1672	junction_1	0	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCTAAAGCAGAGAAGGAAA	NA	False	NA	-16	True	AAGAAA	-5	NA	136330136	136320367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_136320442_136329542
transcript_96128.known	chr4	-	7192	19	FSM	ENSMUSG00000060862.11	ENSMUST00000049583.8	7192	19	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	6.28539361054709	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGCTTGTGTGTTTCAG	9784	False	NA	2	True	AATAAA	-20	NA	136776006	136707042	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_136710556_136712124_136712352_136713793_136713881_136714519_136714683_136715858_136716077_136718808_136718974_136721655_136721863_136722561_136723024_136723335_136723505_136725131_136725266_136725807_136726010_136726786_136726924_136728204_136728286_136728511_136728705_136734348_136734492_136735045_136735209_136744587_136744722_136745334_136746079_136775956
transcript_96133.known	chr4	-	4446	2	FSM	ENSMUSG00000060862.11	ENSMUST00000145505.2	4446	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAAACAAAAC	9678	False	NA	NA	False	NA	NA	NA	136776112	136741788	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_136746079_136775956
transcript_96135.known	chr4	-	2108	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	0	0	0	0	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAAGGTTATTTTCCTC	NA	False	NA	-1	True	ATTAAA	-24	NA	137085031	137047006	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
transcript_96138.known	chr4	-	1448	6	FSM	ENSMUSG00000006699.18	ENSMUST00000030417.10	1448	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	708.103664727136	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTGGTGAAGCTTTATTC	NA	False	NA	NA	False	ATTAAA	-23	NA	137085010	137049072	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_137049931_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
transcript_96141.known	chr4	+	378	1	FSM	ENSMUSG00000070667.8	ENSMUST00000116034.3	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCTCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	137122609	137122987	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137122600_137123000
transcript_96144.nic	chr4	+	2494	13	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	-24	57131	-24	-15398	5prime_fragment	FALSE	canonical	3	21	junction_4	6.15708715402196	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGCCAAGCAAGGTGAATA	NA	False	NA	NA	False	NA	NA	NA	137196055	137240810	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_137196236_137228369_137228506_137229586_137229632_137235111_137235222_137235320_137235380_137235614_137235776_137237852_137237982_137238217_137238473_137238556_137238677_137239152_137239285_137239413_137239559_137239649_137239802_137239940
transcript_96146.nic	chr4	+	1437	10	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	-24	58547	-24	-16814	5prime_fragment	TRUE	canonical	3	21	junction_4	6.76227735764575	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGCCGTCCCTAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	137196055	137239394	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_137196236_137228369_137228506_137229586_137229632_137235111_137235222_137235320_137235380_137235614_137235776_137237852_137237982_137238217_137238473_137238556_137238677_137239152
transcript_96163.nic	chr4	+	3592	28	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	555	junction_19	264.570952206992	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGACTTGAAGGACGTGT	503	False	NA	8	True	AATAAA	-20	NA	137321450	137383642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
transcript_96170.known	chr4	+	5722	28	FSM	ENSMUSG00000043411.16	ENSMUST00000055131.13	5722	28	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_19	271.050863574936	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	570	False	NA	17	True	ATTAAA	-27	NA	137321517	137385842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
transcript_96177.known	chr4	+	5741	27	FSM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_13	294.548307788895	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	503	False	NA	17	True	ATTAAA	-27	NA	137321450	137385842	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
transcript_96181.nic	chr4	+	3550	27	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	584	junction_9	231.427832630339	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGACTTGAAGGACGTGT	488	False	NA	8	True	AATAAA	-20	NA	137321435	137383642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
transcript_962.known	chr1	-	1513	1	FSM	ENSMUSG00000001143.14	ENSMUST00000193502.2	1513	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAGAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	36484338	36482825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36482800_36484300
transcript_9620.nnic	chr10	+	696	4	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	26.9608770051883	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTCATTGCTACTTCA	NA	False	NA	19	True	NA	NA	NA	61670282	61710016	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr10_+_61670501_61698165_61698280_61709460_61709561_61709752
transcript_96218.known	chr4	+	2071	14	FSM	ENSMUSG00000043411.16	ENSMUST00000105839.8	2071	14	0	0	0	0	multi-exon	FALSE	canonical	3	659	junction_9	177.170128514572	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTGTTCCGTGCTTCCA	570	False	NA	NA	False	AATAAA	-6	NA	137321517	137352602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470
transcript_96221.nic	chr4	+	2170	14	ISM	ENSMUSG00000043411.16	ENSMUST00000055131.13	5722	28	-102	33240	-35	0	5prime_fragment	FALSE	canonical	3	584	junction_9	194.53455299173	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTGTTCCGTGCTTCCA	468	False	NA	NA	False	AATAAA	-6	NA	137321415	137352602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470
transcript_9624.nnic	chr10	+	578	3	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_2	20	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCCCCAACTGTAAAATG	NA	False	NA	1	True	NA	NA	NA	61670282	61709998	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Antisense_chr10_+_61670501_61698165_61698280_61709752
transcript_96243.nnic	chr4	+	3290	25	NIC	ENSMUSG00000041351.17	novel	1216	11	NA	NA	-13	0	combination_of_known_splicesites	TRUE	canonical	2	4	junction_1	42.7395008224892	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGAGTTAAGAACAGCT	3324	False	NA	10	True	AATAAA	-20	NA	137392023	137457171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_137392156_137410771_137410808_137431384_137431479_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
transcript_96246.nic	chr4	+	3278	24	NIC	ENSMUSG00000041351.17	novel	1216	11	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	41.4733385102208	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGAGTTAAGAACAGCT	3331	False	NA	10	True	AATAAA	-20	NA	137392030	137457171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_137392156_137431384_137431479_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455539_137455675_137455838_137455880_137456185
transcript_96247.nic	chr4	+	3250	24	NIC	ENSMUSG00000041351.17	novel	1216	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	40.9493208845687	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGAGTTAAGAACAGCT	3328	False	NA	10	True	AATAAA	-20	NA	137392027	137457171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_137392156_137431384_137431479_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
transcript_96253.nic	chr4	+	3289	23	NIC	ENSMUSG00000041351.17	novel	3168	23	NA	NA	-91	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	41.2645416392114	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGAGTTAAGAACAGCT	9859	False	NA	10	True	AATAAA	-20	NA	137434741	137457171	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_137434972_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455539_137455675_137455838_137455880_137456185
transcript_96254.known	chr4	+	3168	23	FSM	ENSMUSG00000041351.17	ENSMUST00000097837.11	3168	23	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	40.603123480388	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGAGTTAAGAACAGCTT	9950	False	NA	11	True	AATAAA	-21	NA	137434832	137457172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137434972_137437197_137437234_137437925_137437974_137438958_137438998_137439325_137439512_137443052_137443157_137443395_137443475_137443830_137443885_137444708_137444793_137445004_137445106_137445225_137445356_137446185_137446342_137446638_137446711_137447220_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
transcript_96264.known	chr4	-	2522	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	0	0	0	0	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGAGTCTTTGTGGTC	NA	False	NA	-2	True	AATAAA	-24	NA	137523695	137469043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
transcript_96266.nnic	chr4	-	2333	11	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	2	49	junction_10	469.73486138459	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGAGTCTTTGTGGTC	NA	False	NA	-2	True	AATAAA	-24	NA	137523667	137469043	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137523552
transcript_96267.nic	chr4	-	3002	11	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	-11	-13	intron_retention	FALSE	canonical	3	1320	junction_10	107.525624852869	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTGAGGCCAGAGCTG	NA	False	NA	-15	True	AATAAA	-11	NA	137523706	137469056	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
transcript_96270.nic	chr4	+	4709	19	NIC	ENSMUSG00000057530.15	novel	4816	20	NA	NA	21	0	combination_of_known_junctions	TRUE	canonical	3	26	junction_1	12.6238310789994	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTGTCTGTGTGTCTG	NA	False	NA	16	True	AATAAA	-16	NA	137589568	137692540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_137589693_137641078_137641166_137648331_137648474_137653529_137653743_137662571_137662694_137663968_137664116_137664649_137664716_137665934_137666127_137672327_137672471_137673565_137673681_137675854_137675966_137676757_137676857_137677466_137677545_137678808_137678913_137683768_137683880_137684445_137684514_137685309_137685501_137688953_137689050_137690040
transcript_96272.nic	chr4	+	4726	19	NIC	ENSMUSG00000057530.15	novel	728	5	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	12.6238310789994	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTGTCTGTGTGTCTG	474	False	NA	16	True	AATAAA	-16	NA	137640799	137692540	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_137640941_137641078_137641166_137648331_137648474_137653529_137653743_137662571_137662694_137663968_137664116_137664649_137664716_137665934_137666127_137672327_137672471_137673565_137673681_137675854_137675966_137676757_137676857_137677466_137677545_137678808_137678913_137683768_137683880_137684445_137684514_137685309_137685501_137688953_137689050_137690040
transcript_96273.known	chr4	-	849	3	FSM	ENSMUSG00000085823.8	ENSMUST00000155349.8	849	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTTGCCTTCATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	137611237	137609680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_137610210_137610538_137610721_137611099
transcript_9628.known	chr10	-	1493	4	FSM	ENSMUSG00000020083.14	ENSMUST00000124615.8	1493	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	54.9322815433289	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946747	61943988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946376
transcript_96280.known	chr4	+	3311	13	FSM	ENSMUSG00000028759.14	ENSMUST00000030541.13	3311	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	22.3320895176027	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	4565	False	NA	42	True	AATAAA	-40	NA	137943937	137970481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137944052_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_96282.known	chr4	+	3361	13	FSM	ENSMUSG00000028759.14	ENSMUST00000165861.8	3361	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	26.2752524039045	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	5069	False	NA	42	True	AATAAA	-40	NA	137944441	137970481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137944606_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_96285.known	chr4	+	3113	12	FSM	ENSMUSG00000028759.14	ENSMUST00000097836.10	3113	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	20.9126479187884	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	4565	False	NA	42	True	AATAAA	-40	NA	137943937	137970481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137944052_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_96288.nic	chr4	+	3147	12	NIC	ENSMUSG00000028759.14	novel	3361	13	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.9615581863273	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGAACTACAGCTTAGTG	5063	False	NA	20	True	AATAAA	-18	NA	137944435	137970459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_137944606_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_9629.known	chr10	-	1769	4	FSM	ENSMUSG00000020083.14	ENSMUST00000125704.8	1769	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.33999733546454	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCAGATCTTGAATTCG	NA	False	NA	NA	False	NA	NA	NA	61946829	61943433	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946737
transcript_96290.known	chr4	+	5155	13	FSM	ENSMUSG00000028759.14	ENSMUST00000105827.8	5155	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	33.1067297623241	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTGTCCATTAATTG	4234	False	NA	NA	False	AATAAA	-20	NA	137943606	137971994	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137944052_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953364_137955958_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_96291.known	chr4	+	810	6	FSM	ENSMUSG00000028759.14	ENSMUST00000137851.8	810	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	46.9195055387416	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTCTGTCCCCGAGCTT	5065	False	NA	NA	False	AAAACA	-6	NA	137944437	137957068	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137944606_137949399_137949500_137950800_137950961_137953199_137953364_137955958_137956099_137956990
transcript_96296.known	chr4	+	3529	11	FSM	ENSMUSG00000045349.16	ENSMUST00000105823.2	3529	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.68328157299975	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAGTAGGTGCTTTGTAC	NA	False	NA	NA	False	ATTAAA	-35	NA	137977774	137988643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137977820_137980922_137981001_137981141_137981270_137981583_137981665_137982008_137982084_137982862_137983010_137984023_137984276_137984425_137984601_137984915_137985025_137985479_137985640_137986364
transcript_96299.known	chr4	+	3512	10	FSM	ENSMUSG00000045349.16	ENSMUST00000105824.8	3512	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	2.55796987404919	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAGTAGGTGCTTTGTAC	NA	False	NA	NA	False	ATTAAA	-35	NA	137977713	137988643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_137977820_137981141_137981270_137981583_137981665_137982008_137982084_137982862_137983010_137984023_137984276_137984425_137984601_137984915_137985025_137985479_137985640_137986364
transcript_963.known	chr1	+	4547	7	FSM	ENSMUSG00000037408.11	ENSMUST00000153128.2	4547	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.11803398874989	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTGGTGAGCATATAACT	3840	False	NA	NA	False	AATAAA	-18	NA	36510700	36547845	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36512167_36537070_36537215_36537475_36537611_36538491_36538662_36538965_36539063_36544681_36544861_36545489
transcript_9630.known	chr10	-	1135	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	41.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946829	61943988	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_61944903_61945662_61945792_61946737
transcript_9631.known	chr10	+	1540	2	FSM	ENSMUSG00000044312.5	ENSMUST00000050103.2	1540	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGGAAAAAAAAAGAAA	9264	False	NA	NA	False	NA	NA	NA	61968868	61970542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_61969107_61969240
transcript_96315.known	chr4	+	2120	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	0	0	0	0	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	5561	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTGTTCTTTTAGTTC	NA	False	NA	37	True	NA	NA	NA	138032040	138039939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
transcript_9633.known	chr10	-	3638	8	FSM	ENSMUSG00000037031.11	ENSMUST00000047883.11	3638	8	0	0	0	0	multi-exon	TRUE	canonical	3	242	junction_7	11.6303613925986	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCTGGTGTTTTATCA	4876	False	NA	NA	False	NA	NA	NA	62067030	62021174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858_62039045_62066798
transcript_96344.known	chr4	-	2375	8	FSM	ENSMUSG00000028756.13	ENSMUST00000030536.13	2375	8	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_7	15.5261464790783	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGTGTACACTGGAGC	NA	False	NA	-9	True	ATTAAA	-16	NA	138053618	138040722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138041525_138042807_138043045_138043314_138043443_138044615_138044780_138045206_138045390_138047299_138047401_138048048_138048334_138053143
transcript_96353.known	chr4	-	846	4	FSM	ENSMUSG00000028755.4	ENSMUST00000030535.4	846	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTTTTTGTTCTTAGTCT	NA	False	NA	NA	False	TATAAA	-29	NA	138095303	138065838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138066312_138070817_138070876_138078494_138078607_138095100
transcript_96354.known	chr4	-	2437	1	FSM	ENSMUSG00000078235.4	ENSMUST00000105032.4	2437	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCTCCTGTGTTGTGTTT	NA	False	NA	NA	False	AATAAA	-26	NA	138123839	138121402	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138121400_138123800
transcript_96359.nnic	chr4	+	3690	5	NNC	ENSMUSG00000041241.13	novel	3733	4	NA	NA	-18	-17	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	87.7638877899105	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTTTCTTTCATGAGT	NA	False	NA	4	True	NA	NA	NA	138161963	138169556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261_138169100_138169140
transcript_96361.nic	chr4	+	1596	5	NIC	ENSMUSG00000041241.13	novel	3944	5	NA	NA	-5	892	combination_of_known_junctions	FALSE	canonical	3	9	junction_2	95.7584852637091	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGGCCAGTCCTCTCCG	NA	False	NA	14	True	NA	NA	NA	138161976	138167214	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_138162191_138163490_138163711_138164938_138165027_138165552_138165674_138166261
transcript_96363.known	chr4	+	3733	4	FSM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	1.24721912892465	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGGTTGTGGCTGGAT	NA	False	NA	24	True	NA	NA	NA	138161981	138169576	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261
transcript_96367.known	chr4	+	4444	2	FSM	ENSMUSG00000046447.4	ENSMUST00000050918.4	4444	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATAGTATTGGGTGAGCAT	5744	False	NA	NA	False	AATAAA	-14	NA	138181624	138187434	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138182663_138184028
transcript_96369.known	chr4	-	2926	2	FSM	ENSMUSG00000043621.14	ENSMUST00000105811.9	2926	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGCCTGTGTGAAGGCG	7349	False	NA	NA	False	AATAAA	-13	NA	138452576	138445848	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138448690_138452491
transcript_96370.known	chr4	-	2465	5	FSM	ENSMUSG00000028749.8	ENSMUST00000030526.7	2465	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	0.707106781186548	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCTGGGTCCTTCTTAG	NA	False	NA	NA	False	AATAAA	-21	NA	138484937	138477843	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138479735_138480573_138480684_138481436_138481582_138484017_138484071_138484671
transcript_96371.known	chr4	+	1206	4	FSM	ENSMUSG00000041202.13	ENSMUST00000105806.2	1206	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCCCCTGACTCAGGCT	NA	False	NA	NA	False	NA	NA	NA	138505204	138508436	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138505281_138505951_138506097_138506659_138506767_138507558
transcript_96373.known	chr4	-	2131	6	FSM	ENSMUSG00000041193.16	ENSMUST00000030524.14	2131	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	8.52291030106501	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCACATGTTTTGGTGTA	NA	False	NA	-5	True	AATAAA	-24	NA	138590780	138526559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310_138546427_138590480
transcript_96376.known	chr4	+	786	4	FSM	ENSMUSG00000028751.14	ENSMUST00000105804.2	786	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.79869268479038	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTCCATTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	138606670	138610128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138606808_138607661_138607801_138607980_138608088_138609725
transcript_96377.known	chr4	-	1668	8	FSM	ENSMUSG00000041161.9	ENSMUST00000097830.4	1668	8	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_7	2.1380899352994	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTTTCTCTCTCATT	NA	False	NA	0	True	NA	NA	NA	138641256	138622689	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138623226_138624026_138624209_138624867_138624965_138625317_138625450_138629162_138629286_138632467_138632581_138636792_138636942_138640920
transcript_96383.nic	chr4	-	812	5	ISM	ENSMUSG00000041161.9	ENSMUST00000097830.4	1668	8	-55	2724	-55	-2724	5prime_fragment	FALSE	canonical	3	21	junction_4	2.1650635094611	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAGATGAAGACAAAAGG	NA	False	NA	NA	False	AATAAA	-4	NA	138641311	138625413	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_138625450_138629162_138629286_138632467_138632581_138636792_138636942_138640920
transcript_9639.known	chr10	+	2258	5	FSM	ENSMUSG00000020081.6	ENSMUST00000020278.6	2258	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.29903810567666	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATATATATGTATATGT	NA	False	NA	NA	False	NA	NA	NA	62088216	62101769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62088989_62093936_62094132_62096950_62097105_62097262_62097460_62100829
transcript_96390.nic	chr4	+	3642	17	NIC	ENSMUSG00000041143.17	novel	3318	17	NA	NA	-605	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	17.3561048337465	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAAGGGTTCTTCTTTTC	NA	False	NA	24	True	AATAAA	-15	NA	138699593	138786478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_138700301_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
transcript_96392.known	chr4	+	2922	16	FSM	ENSMUSG00000041143.17	ENSMUST00000043042.10	2922	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	19.2879928107273	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTTCTTCTTTTCACCT	NA	False	NA	28	True	AATAAA	-19	NA	138700202	138786482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138700301_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
transcript_96396.nnic	chr4	+	2204	11	NNC	ENSMUSG00000041143.17	novel	2922	16	NA	NA	28323	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	21.6529443725328	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAAGGGTTCTTCTTTTC	3247	False	NA	24	True	AATAAA	-15	NA	138728542	138786478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_138728573_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
transcript_96399.known	chr4	+	3318	17	FSM	ENSMUSG00000041143.17	ENSMUST00000050949.9	3318	17	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	8.00780868902348	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAAGGGTTCTTCTTTTC	NA	False	NA	24	True	AATAAA	-15	NA	138700215	138786478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138700599_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
transcript_96400.known	chr4	-	2341	4	FSM	ENSMUSG00000028747.11	ENSMUST00000105802.8	2341	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACGTATTCCTCTAGAC	6957	False	NA	NA	False	NA	NA	NA	138802881	138788418	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138789175_138789384_138789544_138801352_138802641_138802743
transcript_96401.known	chr4	-	1793	4	FSM	ENSMUSG00000041120.7	ENSMUST00000042844.7	1793	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTGGACTGGCTCTCTG	NA	False	NA	NA	False	AATAAA	-25	NA	138820304	138809594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138810914_138812551_138812664_138812764_138812960_138820137
transcript_96403.known	chr4	-	476	4	FSM	ENSMUSG00000050608.12	ENSMUST00000154642.2	476	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	1213.91661804078	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACGCTTTCAACTCCAG	5298	False	NA	-131	True	NA	NA	NA	138858305	138831212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858098
transcript_96404.known	chr4	-	2549	4	FSM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_1	67.4553350167518	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTCTGCCTTCCTCGG	5179	False	NA	NA	False	AATAAA	-38	NA	138858424	138829124	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858232
transcript_96411.known	chr4	+	1674	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	False	NA	8	True	NA	NA	NA	138920209	139019129	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
transcript_96414.known	chr4	+	1390	9	FSM	ENSMUSG00000028745.19	ENSMUST00000030518.16	1390	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	549.5206433793	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTGGTGTGTGAGAGAA	NA	False	NA	10	True	AAAACA	-15	NA	138921306	139018751	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138921531_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
transcript_96421.known	chr4	+	1702	10	FSM	ENSMUSG00000028745.19	ENSMUST00000102507.10	1702	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	666.472545811894	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGGAAAA	NA	False	NA	-52	True	NA	NA	NA	138920234	139019069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139016171_139016285_139018313
transcript_96423.known	chr4	-	1405	9	FSM	ENSMUSG00000028744.16	ENSMUST00000172747.8	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	44.5112345369121	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGCCTGTTTCTGCTGC	NA	False	NA	-5	True	AGTAAA	-13	NA	139037976	139025840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139033920_139035039_139035162_139037939
transcript_96424.known	chr4	-	1532	9	FSM	ENSMUSG00000028744.16	ENSMUST00000053862.12	1532	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_8	18.155147341732	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCCTGTTTCTGCTGCTC	NA	False	NA	-3	True	AGTAAA	-15	NA	139038019	139025838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139034002_139035039_139035162_139037939
transcript_96429.known	chr4	+	1288	7	FSM	ENSMUSG00000028743.8	ENSMUST00000073787.7	1288	7	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	35.9787746070127	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGTCTCCTCTGCTGCCC	NA	False	NA	29	True	AATAAA	-40	NA	139038054	139045737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_139038388_139041414_139041603_139041777_139041883_139044020_139044118_139044244_139044345_139044880_139045011_139045402
transcript_96435.known	chr4	-	930	8	FSM	ENSMUSG00000028741.14	ENSMUST00000030513.13	930	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	364.486667262665	621	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5974	False	NA	-12	True	AATAAA	-34	NA	139079609	139074755	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_139075114_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
transcript_96455.known	chr4	+	1626	11	FSM	ENSMUSG00000066036.15	ENSMUST00000133220.2	1626	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	10.1370607179793	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAGTAATAGAAGATG	NA	False	NA	NA	False	NA	NA	NA	139107979	139125009	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_139108174_139115678_139115777_139118150_139118255_139119095_139119226_139119330_139119471_139120094_139120198_139120327_139120470_139120605_139120731_139123867_139123993_139124463_139124524_139124604
transcript_96458.known	chr4	+	6232	24	FSM	ENSMUSG00000078517.13	ENSMUST00000179784.9	6232	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	117.646453795842	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACTATTTGTGTATAT	NA	False	NA	26	True	NA	NA	NA	139079897	139106041	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_139080029_139081471_139081597_139082122_139082189_139082402_139082497_139084813_139084943_139086550_139086678_139087340_139087491_139087767_139087936_139088190_139088263_139088572_139088636_139089406_139089530_139090476_139090574_139090967_139091091_139091641_139091651_139092505_139092706_139092828_139092979_139093685_139093848_139094404_139094525_139097185_139097324_139098234_139098409_139098906_139099118_139101119_139101205_139102390_139102521_139102656
transcript_9646.nic	chr10	-	4091	19	NIC	ENSMUSG00000037012.19	novel	3851	22	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	146.937964570423	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	-3	True	AGTAAA	-19	NA	62176314	62104882	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62127753_62127823_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
transcript_96463.known	chr4	+	4706	23	FSM	ENSMUSG00000078517.13	ENSMUST00000042096.15	4706	23	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_13	34.6303979591618	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGCATTCCTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	139079920	139104547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_139080029_139081471_139081597_139082122_139082189_139082402_139082497_139084813_139084943_139086550_139086678_139087340_139087491_139087767_139087936_139088190_139088263_139088572_139088636_139089406_139089530_139090476_139090574_139090967_139091091_139092505_139092706_139092828_139092979_139093685_139093848_139094404_139094525_139097185_139097324_139098234_139098409_139098906_139099118_139101119_139101205_139102390_139102521_139102656
transcript_96466.known	chr4	+	3382	15	FSM	ENSMUSG00000028737.16	ENSMUST00000039818.10	3382	15	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	22.7807876447301	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGATCGTGTGTGTC	NA	False	NA	26	True	NA	NA	NA	139350176	139377001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
transcript_96469.known	chr4	+	5716	9	FSM	ENSMUSG00000041025.16	ENSMUST00000174078.2	5716	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.79843682124227	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTATGCTGCTTTGT	NA	False	NA	13	True	AATAAA	-19	NA	139302030	139347693	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_139302909_139330523_139330585_139332309_139332406_139333732_139333874_139334915_139335056_139341104_139341226_139341336_139341430_139342241_139342373_139343638
transcript_96471.nnic	chr4	+	2308	7	NNC	ENSMUSG00000028737.16	novel	4142	15	NA	NA	18722	0	intron_retention	FALSE	canonical	3	14	junction_1	86.9471423081607	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGATCGTGTGTGTC	5534	False	NA	26	True	NA	NA	NA	139369141	139377001	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_139369278_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
transcript_96473.known	chr4	-	1979	10	FSM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	13.4421485642992	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139974095	139754156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661_139762137_139764733_139764850_139794447_139794567_139834565_139834688_139884771_139884885_139973612
transcript_96477.known	chr4	-	4508	29	FSM	ENSMUSG00000040964.17	ENSMUST00000105799.8	4508	29	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	63.5849905277037	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGGGGTTTATGGGA	NA	False	NA	-2	True	AATAAA	-18	NA	140376061	140241795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140296066_140296082_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140314094_140314212_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140375944
transcript_96481.known	chr4	-	4493	28	FSM	ENSMUSG00000040964.17	ENSMUST00000039204.10	4493	28	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_21	42.1702734351014	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGGGGTTTATGGGA	NA	False	NA	-2	True	AATAAA	-18	NA	140376061	140241795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140314094_140314212_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140375944
transcript_96485.known	chr4	-	4531	28	FSM	ENSMUSG00000040964.17	ENSMUST00000069623.12	4531	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	66.4898478177367	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGGGGTTTATGGGA	NA	False	NA	-2	True	AATAAA	-18	NA	140393323	140241795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140296066_140296082_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140393066
transcript_96491.nnic	chr4	-	4454	27	NNC	ENSMUSG00000040964.17	novel	4382	27	NA	NA	8680	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_26	42.3527033291848	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGGGGTTTATGGGA	NA	False	NA	-2	True	AATAAA	-18	NA	140367381	140241795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140367186
transcript_96494.known	chr4	-	4382	27	FSM	ENSMUSG00000040964.17	ENSMUST00000097820.9	4382	27	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_20	26.9722901858523	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGGGGTTTATGGGA	NA	False	NA	-2	True	AATAAA	-18	NA	140376067	140241795	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140375944
transcript_9650.known	chr10	-	4278	18	FSM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_15	35.8424078528779	1272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTGGTTCAGACAAGGG	NA	False	NA	NA	False	AATAAA	-19	NA	62176321	62104633	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
transcript_96510.known	chr4	+	3767	13	FSM	ENSMUSG00000040945.14	ENSMUST00000038893.6	3767	13	0	0	0	0	multi-exon	FALSE	canonical	3	3313	junction_2	495.610285966257	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGCTTTCATGATTCCT	2381	False	NA	28	True	AATAAA	-21	NA	140428783	140450531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140428962_140429457_140429747_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
transcript_96518.nnic	chr4	+	1585	12	NNC	ENSMUSG00000040945.14	novel	3999	15	NA	NA	2386	-1808	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	1322.08953698365	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAGCCTGCCTTTCTAC	4767	False	NA	24	True	ATTAAA	-12	NA	140431169	140448723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_140431263_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
transcript_96519.nnic	chr4	+	1642	12	NNC	ENSMUSG00000040945.14	novel	3999	15	NA	NA	2386	-1751	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	1322.08953698365	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTAAGTTGTATTTCTT	4767	False	NA	12	True	NA	NA	NA	140431169	140448780	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_140431263_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
transcript_96520.nnic	chr4	+	3393	12	NNC	ENSMUSG00000040945.14	novel	3999	15	NA	NA	2386	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	1322.08953698365	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGCTTTCATGATTCCT	4767	False	NA	28	True	AATAAA	-21	NA	140431169	140450531	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_140431263_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
transcript_96522.nic	chr4	-	903	4	ISM	ENSMUSG00000040935.13	ENSMUST00000038749.11	2333	16	11517	0	1917	0	intron_retention	FALSE	canonical	3	19	junction_1	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTACGCCGCCTGAC	NA	False	NA	NA	False	AATAAA	-19	NA	140458437	140454665	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_140455121_140456177_140456340_140457019_140457091_140458222
transcript_96525.known	chr4	-	2316	16	FSM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_4	15.9114214743163	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTAGTTTACCACGGAG	NA	False	NA	-11	True	AATAAA	-14	NA	140501547	140473175	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
transcript_96541.known	chr4	-	3072	16	FSM	ENSMUSG00000025328.10	ENSMUST00000026377.9	3072	16	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_8	5.0710507348631	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGGGTGTTGGCCTTTC	NA	False	NA	0	True	AATAAA	-14	NA	140537959	140512675	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140513946_140516147_140516274_140517023_140517104_140518473_140518577_140518668_140518814_140520288_140520441_140521147_140521256_140522923_140523036_140523123_140523228_140523647_140523827_140525359_140525486_140526215_140526334_140527391_140527454_140528855_140528929_140530777_140530959_140537826
transcript_96544.known	chr4	+	4774	16	FSM	ENSMUSG00000028927.7	ENSMUST00000030765.7	4774	16	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	9.97463449622759	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGCTCTGGGTGACATTC	NA	False	NA	8	True	AATAAA	-33	NA	140633654	140679897	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140633861_140644883_140645068_140646618_140646692_140651624_140651687_140653446_140653565_140654403_140654530_140659375_140659555_140660057_140660162_140660483_140660596_140661926_140662035_140663830_140663983_140665230_140665376_140671752_140671847_140673988_140674075_140676522_140676652_140677001
transcript_96552.known	chr4	+	1142	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	1615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688513	140706504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
transcript_96564.known	chr4	+	1232	6	FSM	ENSMUSG00000009863.15	ENSMUST00000129181.8	1232	6	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	227.940694041235	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGAGTTTGCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	140688711	140704107	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425
transcript_96567.known	chr4	+	1065	5	FSM	ENSMUSG00000009863.15	ENSMUST00000125780.2	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	248.862788500009	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCACCACCACTTCAGACA	NA	False	NA	NA	False	NA	NA	NA	140688713	140701608	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974
transcript_96570.known	chr4	+	3956	29	FSM	ENSMUSG00000036622.16	ENSMUST00000037055.14	3956	29	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_19	18.6368011510253	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGCACTGGTCTTGT	1402	False	NA	12	True	AATAAA	-17	NA	140714183	140734641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140733989_140734160_140734251
transcript_96571.known	chr4	+	3882	29	FSM	ENSMUSG00000036622.16	ENSMUST00000127833.3	3882	29	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_19	21.6883068279021	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGCACTGGTCTTGT	1402	False	NA	12	True	AATAAA	-17	NA	140714183	140734641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140734063_140734160_140734251
transcript_96574.nic	chr4	+	4133	28	NIC	ENSMUSG00000036622.16	novel	3956	29	NA	NA	-2	0	intron_retention	FALSE	canonical	3	40	junction_19	18.4710502737861	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGCACTGGTCTTGT	1400	False	NA	12	True	AATAAA	-17	NA	140714181	140734641	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_140714388_140719442_140719538_140719648_140719832_140721106_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140734160_140734251
transcript_96584.known	chr4	+	1073	9	FSM	ENSMUSG00000060572.18	ENSMUST00000071977.9	1073	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCGTCCAGGGACAGC	NA	False	NA	NA	False	AATAAA	-25	NA	140737954	140743295	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140738033_140740136_140740213_140741083_140741171_140741366_140741394_140741499_140741581_140741705_140741760_140742293_140742382_140742525_140742600_140742787
transcript_96587.known	chr4	-	6582	37	FSM	ENSMUSG00000040860.17	ENSMUST00000102491.10	6582	37	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_36	18.7163690158055	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGTCCACTCAAATG	NA	False	NA	NA	False	NA	NA	NA	140781033	140743947	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140744444_140745164_140745345_140745560_140745693_140745978_140746180_140746473_140746624_140747018_140747244_140747584_140747801_140748964_140749129_140749354_140749476_140749578_140749749_140752506_140752856_140753411_140753580_140755651_140755812_140756408_140756648_140757003_140757148_140757459_140757595_140758202_140758383_140760112_140760283_140761284_140761413_140761669_140761864_140762463_140762695_140762997_140763145_140763994_140764140_140765158_140765342_140768270_140768471_140768933_140769165_140769462_140769547_140770231_140770329_140770718_140770956_140773251_140773359_140773702_140773869_140773946_140774009_140774082_140774167_140774254_140774441_140778351_140778507_140780260_140780403_140780830
transcript_96594.nic	chr4	-	1993	9	NIC	ENSMUSG00000028923.15	novel	1906	8	NA	NA	13	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_4	200.893628569947	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8513	False	NA	-10	True	AATAAA	-22	NA	140805640	140793822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_140794924_140795505_140795591_140797366_140797545_140798891_140799007_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
transcript_96595.nic	chr4	-	2018	9	NIC	ENSMUSG00000028923.15	novel	1906	8	NA	NA	10	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_4	200.893628569947	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8510	False	NA	-10	True	AATAAA	-22	NA	140805643	140793822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_140794924_140795505_140795591_140797366_140797545_140798891_140799029_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
transcript_96600.known	chr4	-	1874	8	FSM	ENSMUSG00000028923.15	ENSMUST00000132906.8	1874	8	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_6	160.29029787182	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8500	False	NA	-10	True	AATAAA	-22	NA	140805653	140793822	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801074_140802270_140802372_140805523
transcript_96617.known	chr4	-	3202	4	FSM	ENSMUSG00000040842.18	ENSMUST00000148204.8	3202	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	172.554017307303	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCTTCCTGTCTCAT	NA	False	NA	0	True	AATACA	-31	NA	140867038	140840311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140843176_140845837_140846090_140847634_140847685_140867002
transcript_96623.known	chr4	-	3203	3	FSM	ENSMUSG00000040842.18	ENSMUST00000094549.11	3203	3	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_2	123	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCTTCCTGTCTCAT	NA	False	NA	0	True	AATACA	-31	NA	140867086	140840311	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_140843176_140845837_140846093_140867002
transcript_96626.known	chr4	+	5934	10	FSM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_2	13.4283650402542	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTGTTTTATTAGTATA	NA	False	NA	15	True	AATAAA	-19	NA	140875223	140931373	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140875491_140895023_140895289_140898134_140898252_140907708_140907844_140920975_140921130_140922491_140922603_140924793_140924891_140925352_140925410_140926240_140926358_140926759
transcript_96630.known	chr4	+	985	6	FSM	ENSMUSG00000073733.5	ENSMUST00000097813.3	985	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.26491106406735	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGGAGGGCTCTCACAT	NA	False	NA	NA	False	NA	NA	NA	140941266	140947459	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_140941375_140941633_140941784_140944562_140944716_140945415_140945541_140945848_140945986_140947147
transcript_96633.nic	chr4	+	3304	18	NIC	ENSMUSG00000028919.12	novel	663	4	NA	NA	56	-397	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	17.2438244298896	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGTGAGTTTTCCT	353	False	NA	-10	True	ATTAAA	-1	NA	140966865	140984478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_140967182_140967942_140968056_140972128_140972278_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
transcript_96634.nic	chr4	+	3621	18	NIC	ENSMUSG00000028919.12	novel	663	4	NA	NA	72	-64	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	17.2438244298896	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATCTTCCCTGTTTTG	369	False	NA	3	True	NA	NA	NA	140966881	140984811	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_140967182_140967942_140968056_140972128_140972278_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
transcript_96635.nic	chr4	+	3703	18	NIC	ENSMUSG00000028919.12	novel	663	4	NA	NA	54	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	17.2438244298896	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTAGCATCTGCTTC	351	False	NA	14	True	TTTAAA	-18	NA	140966863	140984875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_140967182_140967942_140968056_140972128_140972278_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
transcript_96641.nic	chr4	+	3144	17	NIC	ENSMUSG00000028919.12	novel	663	4	NA	NA	67	-397	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	14.2531520636665	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGTGAGTTTTCCT	364	False	NA	-10	True	ATTAAA	-1	NA	140966876	140984478	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_140967182_140967942_140968056_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
transcript_96655.known	chr4	+	3913	17	FSM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_7	17.9965274428152	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCTTTCATTCCTGGA	NA	False	NA	8	True	AATAAA	-22	NA	141028550	141056695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_141028746_141033824_141033893_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
transcript_96658.known	chr4	+	1433	7	FSM	ENSMUSG00000006218.5	ENSMUST00000006380.5	1433	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	7.90393713425292	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAACTTGACCTGGTCTTC	7186	False	NA	13	True	ATTAAA	-19	NA	141095530	141111486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_141095636_141106988_141107105_141107629_141107666_141107912_141108007_141109637_141109821_141110054_141110166_141110698
transcript_96661.nnic	chr4	-	921	7	NNC	ENSMUSG00000006216.11	novel	2370	20	NA	NA	-2958	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_6	35.5387112878337	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTGTCCCCTCTCCTCCC	4177	False	NA	-4	True	AATAAA	-18	NA	141135626	141131663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135593
transcript_96666.known	chr4	+	2769	3	FSM	ENSMUSG00000006221.8	ENSMUST00000102486.5	2769	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTTGTGGAGACCCCAC	148	False	NA	NA	False	AATAAA	-13	NA	141148089	141152622	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_141149292_141149811_141149946_141151189
transcript_96667.known	chr4	-	905	2	FSM	ENSMUSG00000070637.3	ENSMUST00000094544.3	905	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAAGGGAGTCTGACCTTG	NA	False	NA	NA	False	AATAAA	-29	NA	141163416	141159982	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141160768_141163296
transcript_96669.nnic	chr4	+	2922	17	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	55.9686016888041	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	5	True	AATAAA	-15	NA	141171948	141194536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_141172114_141174561_141174649_141175353_141175538_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
transcript_96678.nnic	chr4	+	2872	16	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	-75	0	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_5	44.2053792603972	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	5	True	AATAAA	-15	NA	141171889	141194536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190908_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
transcript_96684.known	chr4	+	2722	16	FSM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	19.5436832648187	885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	5	True	AATAAA	-15	NA	141171964	141194536	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
transcript_96695.nic	chr4	+	2814	15	ISM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	-16	3	-16	-3	intron_retention	FALSE	canonical	3	129	junction_3	18.407102666401	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGTTGCCTGTGGTCCCT	NA	False	NA	2	True	AATAAA	-12	NA	141171948	141194533	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984
transcript_967.known	chr1	+	5292	9	FSM	ENSMUSG00000001138.14	ENSMUST00000097776.4	5292	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	33.4680351230842	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCATTGTACTTTTACC	NA	False	NA	NA	False	ATTAAA	-16	NA	36550947	36567318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36552235_36558032_36558177_36559158_36559309_36559599_36559770_36559899_36559997_36560285_36560420_36560781_36560921_36563114_36563214_36564246
transcript_96704.known	chr4	+	3478	15	FSM	ENSMUSG00000006215.13	ENSMUST00000142438.8	3478	15	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	19.043987749097	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAACAAAACTGCGCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	141171994	141195241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
transcript_9677.known	chr10	+	1218	2	FSM	ENSMUSG00000085347.2	ENSMUST00000143122.2	1218	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCTGTCCTTCTGATTC	NA	False	NA	NA	False	NA	NA	NA	62176385	62186306	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62176563_62185265
transcript_96770.known	chr4	-	3101	9	FSM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_8	521.665826343839	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141325535	141303372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325393
transcript_96777.known	chr4	-	3036	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	0	0	0	0	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141327235	141303372	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
transcript_968.known	chr1	+	5193	8	FSM	ENSMUSG00000001138.14	ENSMUST00000001166.14	5193	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	12.7918979460135	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCATTGTACTTTTACC	NA	False	NA	NA	False	ATTAAA	-16	NA	36550947	36567318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_+_36552235_36558032_36558177_36559158_36559309_36559599_36559770_36559899_36559997_36560285_36560420_36560781_36560921_36564246
transcript_9682.known	chr10	-	2519	15	FSM	ENSMUSG00000020079.16	ENSMUST00000162023.2	2519	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_10	90.2367916729566	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTACTTATTATAGCCTT	NA	False	NA	49	True	AGTAAA	-16	NA	62285462	62265033	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279157_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
transcript_96867.known	chr4	-	2898	6	FSM	ENSMUSG00000043085.15	ENSMUST00000143154.8	2898	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	37.2526509123847	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAGAATTAAAAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	141345944	141340686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141342018_141342255_141342422_141343514_141343933_141344605_141344781_141344950_141345024_141345209
transcript_96869.known	chr4	-	1671	6	FSM	ENSMUSG00000043085.15	ENSMUST00000053263.9	1671	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	22.4535075210979	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345549	141341543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141342018_141342255_141342447_141343514_141343933_141344605_141344781_141344950_141345024_141345209
transcript_96873.known	chr4	-	2478	5	FSM	ENSMUSG00000043085.15	ENSMUST00000156246.2	2478	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	19.536824204563	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCTGCGTTGAGGATCA	NA	False	NA	-8	True	AATAAA	-12	NA	141345292	141341547	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141342018_141342255_141343933_141344605_141344781_141344950_141345024_141345209
transcript_96882.nic	chr4	-	3248	4	NIC	ENSMUSG00000043085.15	novel	1671	6	NA	NA	-93	0	intron_retention	FALSE	canonical	3	77	junction_1	16.391054470859	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345385	141341543	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_141342018_141342255_141344781_141344950_141345024_141345209
transcript_96889.known	chr4	-	2670	5	FSM	ENSMUSG00000040740.8	ENSMUST00000038661.8	2670	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCAATTGCCCTCTGC	NA	False	NA	-4	True	AATAAA	-18	NA	141351132	141346134	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141347906_141348688_141348824_141349514_141349668_141349752_141349819_141350587
transcript_96896.known	chr4	-	3539	10	FSM	ENSMUSG00000078515.5	ENSMUST00000177592.2	3539	10	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_7	26.8842971285984	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATTTTAGAATGAGTGAG	NA	False	NA	-6	True	AATAAA	-24	NA	141450730	141410873	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141412943_141416580_141416643_141419565_141419756_141422717_141422822_141426040_141426170_141430422_141430551_141433242_141433370_141435530_141435768_141440707_141440838_141450367
transcript_96899.known	chr4	+	1407	7	FSM	ENSMUSG00000040706.5	ENSMUST00000038161.5	1407	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	1.49071198499986	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCCTGTGGAGTTCAG	NA	False	NA	NA	False	ATTAAA	-15	NA	141473982	141486574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_141474411_141476885_141477089_141482135_141482185_141483109_141483306_141484696_141484877_141485649_141485735_141486308
transcript_96900.known	chr4	-	5969	15	FSM	ENSMUSG00000040697.11	ENSMUST00000038014.11	5969	15	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_12	6.2974727681274	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTCTGGGGCACCTCT	NA	False	NA	-12	True	AATAAA	-15	NA	141518202	141487499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141491206_141491878_141492050_141493794_141493894_141493972_141494054_141495018_141495096_141495201_141495385_141497163_141497348_141498217_141498349_141501811_141501971_141502676_141502782_141504205_141504391_141510083_141510418_141511998_141512066_141516199_141516385_141517900
transcript_96906.known	chr4	-	468	3	FSM	ENSMUSG00000058579.6	ENSMUST00000127962.2	468	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	12.5	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	535	False	NA	-2	True	AATAAA	-18	NA	141546513	141542272	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141542367_141545175_141545329_141546292
transcript_96907.known	chr4	+	3897	9	FSM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_8	15.5060472074607	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGGCATTTTTCCGG	NA	False	NA	39	True	AATAAA	-21	NA	141520922	141543287	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
transcript_96910.known	chr4	-	2381	4	FSM	ENSMUSG00000040659.4	ENSMUST00000036854.4	2381	4	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	32.1696889771861	711	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGCCGAAGGAGCACTG	3876	False	NA	-13	True	NA	NA	NA	141602231	141585452	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141587190_141587858_141587994_141589115_141589264_141601870
transcript_96919.known	chr4	-	1366	8	FSM	ENSMUSG00000051435.12	ENSMUST00000036701.8	1366	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	3.33197251134017	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTTCATTGCTTC	3716	False	NA	NA	False	AGTAAA	-29	NA	141660400	141643599	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141643864_141645584_141645692_141646058_141646144_141648047_141648274_141649554_141649729_141655690_141655796_141656840_141656949_141660103
transcript_96920.known	chr4	+	630	2	FSM	ENSMUSG00000085761.2	ENSMUST00000126231.2	630	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCTTTGTAAAGTTCTG	NA	False	NA	NA	False	CATAAA	-12	NA	141745208	141756307	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_141745442_141755910
transcript_96922.known	chr4	-	1875	3	FSM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	4	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9800	False	NA	-6	True	AATAAA	-18	NA	141811615	141758302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141759406_141764715_141765245_141811372
transcript_96923.nnic	chr4	-	2443	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-991	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9697	False	NA	-6	True	AATAAA	-18	NA	141812606	141758302	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_141759406_141764715_141765245_141811795
transcript_96925.known	chr4	+	3440	2	FSM	ENSMUSG00000073728.11	ENSMUST00000153023.2	3440	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	141811282	141815370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_141813043_141813690
transcript_96926.nic	chr4	-	4961	15	NIC	ENSMUSG00000040606.15	novel	4898	15	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_3	104.248232011632	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCTTTCTTGTTGGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	141966757	141829700	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_141832266_141834122_141834238_141835856_141836024_141836587_141836690_141839418_141839651_141844395_141844515_141845385_141845592_141868983_141869108_141870604_141870656_141874328_141874457_141878156_141878347_141881740_141881912_141886354_141886492_141937325_141937518_141966295
transcript_96930.known	chr4	-	3843	8	FSM	ENSMUSG00000040606.15	ENSMUST00000036476.10	3843	8	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	28.2510610239614	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATTCTATGTGATTTGA	NA	False	NA	-3	True	AATAAA	-19	NA	141966712	141866550	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_141869108_141870604_141870656_141874328_141874457_141878156_141878347_141881740_141881912_141886354_141886492_141937325_141937518_141966295
transcript_96950.known	chr4	-	617	6	FSM	ENSMUSG00000057637.14	ENSMUST00000134791.2	617	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	13.2905981806689	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTCCCCGAAGAGCCGG	NA	False	NA	NA	False	NA	NA	NA	142939279	142888649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_142888753_142896605_142896759_142905884_142905962_142907446_142907562_142921230_142921305_142939184
transcript_96951.known	chr4	-	1817	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCCAACATTTGACACT	NA	False	NA	-23	True	AATAAA	-20	NA	143026134	142994000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
transcript_96952.known	chr4	-	762	5	FSM	ENSMUSG00000028583.15	ENSMUST00000119654.2	762	5	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_2	239.080530365816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTCCTGTGGAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	143026033	142994915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_142994997_142995757_142995870_143000469_143000627_143002640_143002778_143025758
transcript_96953.known	chr4	+	2324	2	FSM	ENSMUSG00000028584.4	ENSMUST00000052458.3	2324	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTGTAGTCTATTGGTA	NA	False	NA	NA	False	AATAAA	-20	NA	143076326	143097602	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_143077382_143096333
transcript_96955.known	chr4	+	3886	5	FSM	ENSMUSG00000046862.15	ENSMUST00000059790.11	3886	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_2	51.5866988670529	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTTCACTTCCTTTG	NA	False	NA	10	True	AATAAA	-17	NA	143138995	143147661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_143139662_143141918_143141984_143143209_143143523_143143942_143144531_143145407
transcript_96959.known	chr4	+	3260	4	FSM	ENSMUSG00000046862.15	ENSMUST00000037356.8	3260	4	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	39.6316371938716	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTTCACTTCCTTTG	NA	False	NA	10	True	AATAAA	-17	NA	143139556	143147661	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_143139662_143143209_143143523_143143942_143144531_143145407
transcript_96962.nnic	chr4	-	2030	4	NNC	ENSMUSG00000078509.2	novel	1753	3	NA	NA	-3261	183	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	11.4406682011537	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAACAACAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	143724200	143717505	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_143718582_143719503_143720077_143720652_143720966_143724132
transcript_96964.nnic	chr4	+	2095	4	NNC	ENSMUSG00000078508.2	novel	1745	3	NA	NA	-3320	195	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	5.90668171555645	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAACAACAACAACAACAAAA	NA	False	NA	NA	False	NA	NA	NA	144053498	144060230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_144053628_144056792_144057106_144057681_144058255_144059150
transcript_96965.nnic	chr4	+	2684	4	NNC	ENSMUSG00000078508.2	novel	1745	3	NA	NA	-3320	784	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	5.90668171555645	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTGAGTATTTTTTTTC	NA	False	NA	NA	False	AATGAA	-13	NA	144053498	144060819	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_144053628_144056792_144057106_144057681_144058255_144059150
transcript_96966.known	chr4	+	2094	4	FSM	ENSMUSG00000070619.6	ENSMUST00000094526.5	2094	4	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_3	3.09120616516523	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATACCACACCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	144084511	144090989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_144084551_144088178_144088493_144088970_144089562_144089839
transcript_96968.nnic	chr4	-	3213	5	NNC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	3731	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	45.0499722530436	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144131256	144118243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907_144130021_144130508
transcript_96969.nic	chr4	-	2544	5	NIC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	43.6369969177532	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144135005	144118243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907_144130021_144134926
transcript_96970.nic	chr4	-	2655	4	NIC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	4777	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	38.7843038125248	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144130210	144118243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907
transcript_96971.known	chr4	-	2460	4	FSM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	9.80929264637478	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144135034	144118243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_144119688_144121144_144121730_144122249_144122573_144134926
transcript_96972.nic	chr4	+	1847	7	NIC	ENSMUSG00000066026.15	novel	1349	7	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	64.9837586546738	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTTCGTTCACGTGTT	5660	False	NA	9	True	AATAAA	-16	NA	144619360	144654212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_144619946_144620154_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
transcript_96973.known	chr4	+	2337	6	FSM	ENSMUSG00000066026.15	ENSMUST00000154208.8	2337	6	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	25.4982352330509	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCAGTGTGACCTGGT	5946	False	NA	NA	False	AATAAA	-24	NA	144619646	144654779	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
transcript_96981.known	chr4	-	3818	10	FSM	ENSMUSG00000028599.11	ENSMUST00000030336.11	3818	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	11.2546286774228	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTTATCTGTTTGTT	7832	False	NA	NA	False	AATAAA	-38	NA	144973440	144940032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_144942671_144946298_144946507_144949523_144949559_144950072_144950151_144950821_144951055_144951381_144951476_144951899_144952053_144954037_144954167_144955573_144955677_144973293
transcript_96996.known	chr4	-	3414	13	FSM	ENSMUSG00000028602.13	ENSMUST00000030339.13	3414	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_11	3.685557397916	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCCTTTGGTATTTG	NA	False	NA	NA	False	AATAAA	-15	NA	145041717	144993706	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_144995806_145000852_145001067_145004095_145004122_145011715_145011770_145011895_145011995_145014548_145014647_145014995_145015087_145019163_145019331_145019668_145019760_145023419_145023564_145025303_145025421_145029647_145029736_145041591
transcript_97.known	SIRV3	+	779	5	FSM	SIRV3A	SIRV307	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1963	8939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
transcript_97016.known	chr4	+	545	3	FSM	ENSMUSG00000085101.8	ENSMUST00000150529.2	545	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	10.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATTCATACAGGAGAGAA	NA	False	NA	67	True	NA	NA	NA	145136835	145176326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_145136997_145138756_145138851_145176036
transcript_9702.known	chr10	+	1865	1	FSM	ENSMUSG00000097129.3	ENSMUST00000238598.2	1865	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTGGCTCAGTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	62285267	62287132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62285300_62287100
transcript_97028.known	chr4	+	2996	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	894	False	NA	NA	False	NA	NA	NA	145237328	145265758	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
transcript_97038.nnic	chr4	+	1038	3	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-47	235	multi-exon	FALSE	non_canonical	0	0	junction_2	2	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATACAGTGTCTTTTTCTG	4972	False	NA	NA	False	NA	NA	NA	145241406	145301966	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145241589_145301002_145301728_145301835
transcript_97039.nnic	chr4	+	1570	3	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-47	767	multi-exon	FALSE	non_canonical	0	0	junction_2	2	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	4972	False	NA	NA	False	AGTAAA	-10	NA	145241406	145302498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145241589_145301002_145301728_145301835
transcript_97040.nnic	chr4	+	1594	3	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-47	767	multi-exon	FALSE	non_canonical	0	0	junction_2	2	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	4972	False	NA	NA	False	AGTAAA	-10	NA	145241406	145302498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145241589_145301002_145301752_145301835
transcript_97042.nnic	chr4	+	1590	3	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9932	767	multi-exon	FALSE	non_canonical	0	0	junction_2	47	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	7429	False	NA	NA	False	AGTAAA	-10	NA	145291165	145302498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_+_145291368_145301002_145301728_145301835
transcript_97043.nnic	chr4	+	1614	3	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9932	767	multi-exon	FALSE	non_canonical	0	0	junction_2	47	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	7429	False	NA	NA	False	AGTAAA	-10	NA	145291165	145302498	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_+_145291368_145301002_145301752_145301835
transcript_97046.nnic	chr4	+	826	2	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-47	-85	multi-exon	FALSE	canonical	1	4	junction_1	0	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAGGAGGAAGATGAGG	4972	False	NA	NA	False	NA	NA	NA	145241406	145301646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145241589_145301002
transcript_97047.nnic	chr4	+	1005	2	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-47	94	multi-exon	FALSE	canonical	1	4	junction_1	0	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTAAGATTTGTTTTT	4972	False	NA	20	True	AAGAAA	-16	NA	145241406	145301825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145241589_145301002
transcript_97049.nnic	chr4	+	514	2	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9932	-417	multi-exon	FALSE	canonical	3	94	junction_1	0	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAATGAAAACCTACATC	7429	False	NA	NA	False	NA	NA	NA	145291165	145301314	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_+_145291368_145301002
transcript_9705.known	chr10	-	2712	9	FSM	ENSMUSG00000020078.17	ENSMUST00000092473.5	2712	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	336.090552344156	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTGTCATTACAGCAT	5405	False	NA	-5	True	AATAAA	-15	NA	62322377	62291013	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322156
transcript_97051.nnic	chr4	+	846	2	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9932	-85	multi-exon	FALSE	canonical	3	94	junction_1	0	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAGGAGGAAGATGAGG	7429	False	NA	NA	False	NA	NA	NA	145291165	145301646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_+_145291368_145301002
transcript_97052.nnic	chr4	+	1025	2	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9932	94	multi-exon	FALSE	canonical	3	94	junction_1	0	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTAAGATTTGTTTTT	7429	False	NA	20	True	AAGAAA	-16	NA	145291165	145301825	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_+_145291368_145301002
transcript_9706.known	chr10	-	2597	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	0	0	0	0	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTTAAGTTTGTAGTT	5198	False	NA	-11	True	AATAAA	-12	NA	62322584	62291055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
transcript_97067.nnic	chr4	+	2826	9	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	-36	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	19.0984292547843	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145311699	145351910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_145311905_145312571_145312707_145313929_145314095_145321950_145321987_145322185_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
transcript_97084.nnic	chr4	+	2790	8	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	-36	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.7891846886963	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145311699	145351910	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_145311905_145312571_145312707_145313929_145314095_145322185_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
transcript_971.nic	chr1	-	2736	4	NIC	ENSMUSG00000079610.10	novel	2646	4	NA	NA	-19	24	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	27.1947707391615	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGGTGGTGGTTACAGA	6995	False	NA	NA	False	NA	NA	NA	36586331	36576563	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr1_-_36578616_36580904_36581144_36581842_36581947_36585990
transcript_9710.nic	chr10	-	2531	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	111	junction_6	333.910900983958	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5193	False	NA	-6	True	AATAAA	-17	NA	62322589	62291050	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
transcript_97127.nnic	chr4	+	481	3	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	0	-30243	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_2	36	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGAGTTCTCTGGTAAAC	NA	False	NA	NA	False	AAAAAG	-6	NA	145311735	145319542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_145312083_145314001_145314095_145319501
transcript_97140.nnic	chr4	+	1329	7	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-9	3476	multi-exon	FALSE	canonical	0	0	junction_2	167.320052593824	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311726	145434487	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145312083_145314001_145314095_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145433992
transcript_97148.nnic	chr4	+	742	5	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-11	-1479	multi-exon	TRUE	canonical	0	0	junction_1	208.631703007956	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGGGGTCTTCTATCAT	NA	False	NA	NA	False	TATAAA	-16	NA	145311724	145427731	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145311905_145399301_145399395_145422720_145422806_145425813_145425941_145427474
transcript_97149.nnic	chr4	+	816	5	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-11	-1405	multi-exon	FALSE	canonical	0	0	junction_1	208.631703007956	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGATGAGGTTTTGGTTT	NA	False	NA	NA	False	AATAAA	-3	NA	145311724	145427805	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145311905_145399301_145399395_145422720_145422806_145425813_145425941_145427474
transcript_97150.known	chr4	+	4006	5	FSM	ENSMUSG00000058186.14	ENSMUST00000105738.9	4006	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	173.168992605489	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	145397254	145431011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474
transcript_97155.nnic	chr4	+	3910	4	NNC	ENSMUSG00000058186.14	novel	1938	3	NA	NA	3795	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	187.21289129402	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	145401049	145431011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_145401211_145422720_145422806_145425813_145425941_145427474
transcript_97157.nnic	chr4	+	353	3	Genic_Genomic	ENSMUSG00000094417.2	novel	565	1	NA	NA	-135	14245	multi-exon	FALSE	canonical	3	220	junction_1	12	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGAGTTCTTCTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	145501153	145516098	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Genic_Genomic_chr4_+_145501361_145510590_145510684_145516045
transcript_97169.nnic	chr4	+	708	6	Fusion	ENSMUSG00000084350.2_ENSMUSG00000078502.11	novel	2413	3	NA	NA	-17	-2021	multi-exon	FALSE	canonical	2	3	junction_4	97.8885080078351	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145311755	145554491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145311905_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
transcript_97170.nnic	chr4	+	812	6	Fusion	ENSMUSG00000084350.2_ENSMUSG00000094417.2	novel	2413	3	NA	NA	-181	-2021	multi-exon	FALSE	canonical	2	3	junction_4	108.584713472938	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145501107	145554491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_145501361_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
transcript_97172.nnic	chr4	+	740	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43778	-2021	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	163.313930820368	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145508028	145554491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_145508210_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
transcript_97176.nnic	chr4	+	913	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43736	-2021	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	99.0898582096069	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145508070	145554491	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_145508425_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
transcript_9718.known	chr10	-	1727	4	FSM	ENSMUSG00000020077.15	ENSMUST00000160987.8	1727	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	6.34209919681348	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATATGATATAAAATGT	NA	False	NA	NA	False	NA	NA	NA	62363230	62329611	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62330886_62333557_62333703_62343420_62343616_62363117
transcript_97199.nnic	chr4	+	1072	5	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-4760	-494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.3495801958527	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATACAGAAGAGAAAATT	5403	False	NA	NA	False	NA	NA	NA	145590603	145626038	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_145590812_145593464_145593558_145618982_145619087_145623213_145623341_145625498
transcript_972.known	chr1	-	664	4	FSM	ENSMUSG00000079610.10	ENSMUST00000194894.4	664	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	19.6015872373189	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTACACAGACTAGCTCT	7014	False	NA	NA	False	NA	NA	NA	36586312	36578440	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36578616_36580904_36581144_36581842_36581947_36586166
transcript_97205.nnic	chr4	+	2713	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-33	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	82.8322853723112	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033834	146063194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061347_146061514
transcript_97207.known	chr4	+	2798	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	146033914	146063191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
transcript_97208.nnic	chr4	+	2754	3	NIC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-33	3	combination_of_known_splicesites	FALSE	canonical	3	72	junction_2	50	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033834	146063194	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_146034017_146054375_146054480_146060726
transcript_97209.known	chr4	+	266	2	FSM	ENSMUSG00000066009.9	ENSMUST00000154939.2	266	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	146033867	146035167	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_146034017_146035050
transcript_9721.known	chr10	-	938	3	FSM	ENSMUSG00000020077.15	ENSMUST00000020271.13	938	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGGCTATGTGACATGG	NA	False	NA	-2	True	AATAAA	-21	NA	62343534	62330206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62330886_62333557_62333703_62343420
transcript_9722.known	chr10	-	2472	7	FSM	ENSMUSG00000036955.17	ENSMUST00000065887.14	2472	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_2	17.3629554575891	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTTTATTACCTCTTTT	8201	False	NA	0	True	AATAAA	-22	NA	62414236	62394248	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62395663_62399014_62399131_62401815_62401901_62405237_62405422_62406177_62406258_62410828_62410928_62413742
transcript_97224.known	chr4	+	4244	5	FSM	ENSMUSG00000066007.16	ENSMUST00000168483.9	4244	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	207.21064161862	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	146093393	146135319	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535
transcript_97236.nnic	chr4	+	789	6	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-43	38389	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	167.233489469065	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206857	146253393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146250678_146250737_146251579_146251707_146253158
transcript_97242.nnic	chr4	+	1214	4	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-43	238189	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	179.91541222351	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGGAAAAAGGGAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	146206857	146453193	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146207052_146209452_146209546_146214922_146215009_146452352
transcript_97245.known	chr4	+	282	3	FSM	ENSMUSG00000085525.8	ENSMUST00000124975.2	282	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	186	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146206941	146215004	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_146207052_146209452_146209546_146214925
transcript_9727.known	chr10	-	959	3	FSM	ENSMUSG00000036955.17	ENSMUST00000159722.2	959	3	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCACTCATGGTGTCTGCTG	8264	False	NA	NA	False	NA	NA	NA	62414173	62405828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62406258_62410828_62410928_62413742
transcript_97283.nnic	chr4	+	979	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33312	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	287.112800132631	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500167	146550672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146500588_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
transcript_97287.nnic	chr4	+	759	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33307	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	272.465337244942	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500172	146550672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146500373_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
transcript_97288.nnic	chr4	+	782	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33307	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	275.60595058888	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500172	146550672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146500373_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437
transcript_9729.known	chr10	-	4722	15	FSM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_14	69.0087246776279	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTCTTGGTGGCTTTT	NA	False	NA	-5	True	AATAAA	-18	NA	62438060	62416029	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
transcript_97291.nnic	chr4	+	924	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33301	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	278.693810480247	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500178	146550672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146500544_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
transcript_97292.nnic	chr4	+	947	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33301	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	279.837810168676	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500178	146550672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146500544_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437
transcript_973.known	chr1	-	2646	4	FSM	ENSMUSG00000079610.10	ENSMUST00000207843.2	2646	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	29.9369708257569	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7026	False	NA	NA	False	NA	NA	NA	36586300	36576587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36585990
transcript_97305.nnic	chr4	+	660	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16688	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	291.29827926028	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1806	False	NA	NA	False	AATACA	-2	NA	146516791	146550672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437
transcript_97306.nnic	chr4	+	683	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16688	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	299.080674735095	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1806	False	NA	NA	False	AATACA	-2	NA	146516791	146550672	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146516986_146533486_146533556_146547961_146548020_146548860_146548988_146550437
transcript_9731.known	chr10	+	1779	1	FSM	ENSMUSG00000112347.2	ENSMUST00000218594.2	1779	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGCTAAGATTTTTTTT	5476	False	NA	NA	False	AATAAA	-17	NA	62438128	62439907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62438100_62439900
transcript_97323.known	chr4	+	3038	5	FSM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	129.101462036648	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146586483	146623849	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233
transcript_97328.known	chr4	+	2953	4	FSM	ENSMUSG00000056300.15	ENSMUST00000179175.3	2953	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146599376	146623852	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
transcript_97336.nnic	chr4	+	848	7	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-43	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	127.839417499716	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAATGACTCTGTAAACAG	NA	False	NA	NA	False	AAAAAG	-35	NA	146695374	146742064	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146695586_146697966_146698060_146703608_146703692_146728915_146728962_146739355_146739414_146740256_146740384_146741834
transcript_97340.nnic	chr4	+	834	4	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-25	150340	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	91.507133905262	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTGTACTCTTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	146695392	146892957	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146695757_146697966_146698060_146703608_146703696_146892667
transcript_97343.nnic	chr4	+	358	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-43	-38402	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_2	137	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGAGTTCTTCTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	146695374	146703662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146695586_146697966_146698060_146703608
transcript_97344.nnic	chr4	+	511	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-25	-38402	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_2	52.5	31	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGAGTTCTTCTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	146695392	146703662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146695757_146697966_146698060_146703608
transcript_97345.nnic	chr4	+	546	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-16	-38402	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_2	9	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGAGTTCTTCTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	146695401	146703662	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146695801_146697966_146698060_146703608
transcript_97348.nic	chr4	+	304	2	ISM	ENSMUSG00000063245.12	ENSMUST00000130825.8	1275	6	-43	44558	-43	-44005	5prime_fragment	FALSE	canonical	3	393	junction_1	0	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTTAGAGGTATTGAAC	NA	False	NA	NA	False	NA	NA	NA	146695374	146698059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_146695586_146697966
transcript_97349.nnic	chr4	+	457	2	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-25	-44005	at_least_one_novel_splicesite	FALSE	canonical	3	224	junction_1	0	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTTAGAGGTATTGAAC	NA	False	NA	NA	False	NA	NA	NA	146695392	146698059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146695757_146697966
transcript_97350.nnic	chr4	+	492	2	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-16	-44005	at_least_one_novel_splicesite	FALSE	canonical	3	137	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTTAGAGGTATTGAAC	NA	False	NA	NA	False	NA	NA	NA	146695401	146698059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_146695801_146697966
transcript_97353.nnic	chr4	-	2878	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.705728832981	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994047	146912352	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_146913241_146913913_146914389_146976181_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146991966_146992072_146993882
transcript_97360.nnic	chr4	-	785	6	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	61557	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	107.369641891924	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAACCGAAATGCAGAATT	NA	False	NA	NA	False	AAGAAA	-4	NA	146994047	146914595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_146914767_146976977_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146993882
transcript_97362.nnic	chr4	-	705	5	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	61557	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	109.527393833689	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAACCGAAATGCAGAATT	NA	False	NA	NA	False	AAGAAA	-4	NA	146994047	146914595	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_146914767_146976977_146977116_146978205_146978333_146982168_146982273_146993882
transcript_97363.known	chr4	-	750	5	FSM	ENSMUSG00000045699.5	ENSMUST00000049821.4	750	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	126.107840755442	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTGTTTTCTACCATTA	NA	False	NA	-2	True	AATACA	-20	NA	146994047	146976862	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
transcript_97365.nnic	chr4	-	671	5	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	-58	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_4	101.87001521547	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTAAGCCCAGGAACACT	NA	False	NA	-60	True	NA	NA	NA	146994047	146976920	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146993882
transcript_97368.known	chr4	-	1296	4	FSM	ENSMUSG00000045699.5	ENSMUST00000238583.2	1296	4	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	62.9938268580519	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	146993984	146976152	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146993882
transcript_97372.nnic	chr4	+	2812	6	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-66	722	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	17.2788888531641	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056366	147075934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_147056575_147065617_147065693_147067150_147067255_147071090_147071218_147073383_147074794_147075046
transcript_97379.known	chr4	+	2295	5	FSM	ENSMUSG00000086147.3	ENSMUST00000146688.3	2295	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	133.103343308874	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTATGTGACAAATACAA	NA	False	NA	NA	False	NA	NA	NA	147056432	147075212	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_147056575_147058404_147058498_147067150_147067255_147071090_147071218_147073383
transcript_9738.nic	chr10	-	2668	16	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_15	70.2071854505569	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8083	False	NA	-11	True	ATTAAA	-28	NA	62487020	62451793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
transcript_97385.nnic	chr4	+	852	6	Fusion	ENSMUSG00000086147.3_ENSMUSG00000067919.9	novel	2295	5	NA	NA	-67	-3274	multi-exon	FALSE	canonical	3	31	junction_2	217.040088462938	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	147056365	147141977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_147056575_147058404_147058498_147115003_147115080_147136962_147137048_147140055_147140183_147141715
transcript_97386.nnic	chr4	+	921	6	Fusion	ENSMUSG00000086147.3_ENSMUSG00000067919.9	novel	2295	5	NA	NA	-67	-3205	multi-exon	FALSE	canonical	3	31	junction_2	217.040088462938	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGATGAGGTTTTGGTTT	NA	False	NA	NA	False	AATAAA	-3	NA	147056365	147142046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_147056575_147058404_147058498_147115003_147115080_147136962_147137048_147140055_147140183_147141715
transcript_97391.nnic	chr4	+	840	6	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	-45	-3274	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	254.496365396443	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	2238	False	NA	NA	False	TATAAA	-21	NA	147106261	147141977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_147106458_147107818_147107913_147115003_147115080_147136962_147137048_147140055_147140183_147141715
transcript_97396.known	chr4	+	3993	5	FSM	ENSMUSG00000067919.9	ENSMUST00000075775.6	3993	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	279.904894562421	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	2283	False	NA	NA	False	AATAAA	-19	NA	147106306	147145251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_147106458_147107818_147107913_147136962_147137048_147140055_147140183_147141715
transcript_97399.nnic	chr4	+	1188	3	Fusion	ENSMUSG00000086147.3_ENSMUSG00000067919.9	novel	309	2	NA	NA	-21	5746	multi-exon	FALSE	non_canonical	0	0	junction_2	42	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTGCGAGACTGT	NA	False	NA	NA	False	NA	NA	NA	147056411	147114014	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_+_147056575_147107818_147107913_147113083
transcript_974.known	chr1	-	2109	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	11.5566238822398	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATGTGTGGCGCTAAT	6800	False	NA	77	True	NA	NA	NA	36586526	36577174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
transcript_9740.known	chr10	-	2535	15	FSM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_9	23.4748019486984	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8106	False	NA	-11	True	ATTAAA	-28	NA	62486997	62451793	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
transcript_97403.known	chr4	+	585	4	FSM	ENSMUSG00000087207.9	ENSMUST00000125785.8	585	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	228.391476782008	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACAGTGTAAGTTTGTT	4110	False	NA	NA	False	AATACA	-9	NA	147314740	147343085	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_147314893_147316807_147316901_147337753_147337859_147342850
transcript_97430.nnic	chr4	+	619	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-46	828	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	34.6410161513775	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTTAAAAAAAATGCTG	NA	False	NA	NA	False	NA	NA	NA	147390084	147419019	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_147390233_147409276_147409335_147413438_147413566_147414396_147414502_147418838
transcript_97432.known	chr4	+	2800	4	FSM	ENSMUSG00000078498.6	ENSMUST00000148762.4	2800	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	71.5976411777806	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390130	147418191	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724
transcript_97438.known	chr4	+	1250	5	FSM	ENSMUSG00000078497.10	ENSMUST00000154154.2	1250	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	206.815739246316	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGAGAAACCTTACAAAT	2377	False	NA	NA	False	NA	NA	NA	147445767	147475461	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_147445910_147447267_147447362_147469676_147469759_147472778_147472906_147474656
transcript_97441.known	chr4	+	572	5	FSM	ENSMUSG00000078497.10	ENSMUST00000133078.8	572	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	194.465292533141	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTCTTTTAAATGTAAT	2369	False	NA	NA	False	NA	NA	NA	147445759	147474746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_147445939_147447267_147447362_147469676_147469759_147472778_147472906_147474656
transcript_97458.nnic	chr4	+	684	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-37	-840	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	123.241632576009	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147576836	147597037	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801
transcript_9748.nic	chr10	-	777	4	ISM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	-54	26775	-54	-2295	5prime_fragment	FALSE	canonical	3	233	junction_3	13.5973853695808	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGCTCACCAAAGGTAACG	8052	False	NA	NA	False	ATTAAA	-5	NA	62487051	62478568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_62478734_62479075_62479152_62482692_62482981_62486803
transcript_9749.known	chr10	-	3510	4	FSM	ENSMUSG00000036923.13	ENSMUST00000133371.8	3510	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.942809041582063	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCTCCTTTTCTAATT	NA	False	NA	NA	False	AAGAAA	-8	NA	62561907	62494821	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62495447_62499733_62502105_62503599_62503753_62561546
transcript_9752.nic	chr10	-	2719	18	ISM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	-71	8713	-71	0	5prime_fragment	FALSE	canonical	0	0	junction_4	91.878925898279	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTGTAATTTCCAAGATA	NA	False	NA	-1	True	GATAAA	-30	NA	62628136	62588953	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_9753.nic	chr10	-	2659	18	NIC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	109.133739101987	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAGAAAGAGAAGA	NA	False	NA	-99	True	AAAAAG	-39	NA	62628088	62589051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
transcript_97533.nnic	chr4	+	2536	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-188703	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	43.1397728320398	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	5640	False	NA	NA	False	NA	NA	NA	147449030	147669652	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_147449095_147637789_147637884_147661528_147661587_147665698_147665826_147667290_147668023_147668191
transcript_97537.known	chr4	+	2762	6	FSM	ENSMUSG00000065999.14	ENSMUST00000081742.7	2762	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	34.5913283931103	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637795	147669655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_147637884_147646898_147646979_147647371_147647416_147661528_147661587_147665698_147665826_147667290
transcript_9754.nic	chr10	-	2621	18	ISM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	-71	8811	-71	0	5prime_fragment	FALSE	canonical	0	0	junction_4	91.878925898279	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAGAAAGAGAAGA	NA	False	NA	-99	True	AAAAAG	-39	NA	62628136	62589051	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_97550.nnic	chr4	+	2778	5	NIC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	2	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_2	39.4104998699585	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637735	147669655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_147637884_147646898_147646979_147661528_147661587_147665698_147665826_147667290
transcript_97551.nnic	chr4	+	687	5	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-22	69002	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.8156986040721	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGTACTCTTGCTCCTG	NA	False	NA	NA	False	NA	NA	NA	147637711	147738657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_147637884_147639766_147639865_147661528_147661587_147680172_147680225_147738350
transcript_97561.known	chr4	+	628	4	FSM	ENSMUSG00000065999.14	ENSMUST00000139784.8	628	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	19.7540431867054	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAACACAAGCGAAA	NA	False	NA	NA	False	NA	NA	NA	147637733	147667583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290
transcript_97569.nnic	chr4	-	2652	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_4	198.757861479741	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726998	147696393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726761
transcript_97570.known	chr4	-	2594	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726970	147696393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
transcript_97571.known	chr4	-	574	5	FSM	ENSMUSG00000066000.13	ENSMUST00000133006.2	574	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAAGTACACCTCATAAA	NA	False	NA	NA	False	AATATA	-14	NA	147726953	147698367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
transcript_97572.nnic	chr4	-	2652	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	233.355281705814	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726969	147696393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147703015_147725368_147725463_147726791
transcript_97573.nnic	chr4	-	2695	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-71	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	233.592058940367	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147727041	147696393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147703015_147725368_147725463_147726820
transcript_97590.known	chr4	-	2885	4	FSM	ENSMUSG00000062518.8	ENSMUST00000117638.2	2885	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	89.2238134630486	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147787010	147757958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147760511_147762673_147762801_147766723_147766828_147786908
transcript_97596.known	chr4	-	2729	6	FSM	ENSMUSG00000078495.11	ENSMUST00000105734.10	2729	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	98.3963413953995	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9523	False	NA	NA	False	NA	NA	NA	147894245	147838430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147840693_147842158_147842286_147845677_147845736_147880114_147880182_147891546_147891641_147894124
transcript_97602.nnic	chr4	-	2707	4	NNC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	106.377733676847	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	8355	False	NA	NA	False	NA	NA	NA	147860308	147838430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147860095
transcript_97603.known	chr4	-	2405	4	FSM	ENSMUSG00000078495.11	ENSMUST00000122309.2	2405	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	106.377733676847	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGTATCTGGCAAACT	8373	False	NA	NA	False	NA	NA	NA	147860290	147838655	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147840693_147842158_147842286_147845677_147845783_147860154
transcript_97604.nnic	chr4	-	634	4	NIC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-11	-1735	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	106.377733676847	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAACCGAAATGCAGAATT	8362	False	NA	NA	False	AAGAAA	-4	NA	147860301	147840390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_147840693_147842158_147842286_147845677_147845736_147860154
transcript_97608.nnic	chr4	-	507	3	NIC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-11	-1735	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	9	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAACCGAAATGCAGAATT	8362	False	NA	NA	False	AAGAAA	-4	NA	147860301	147840390	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_147840693_147845677_147845736_147860154
transcript_97615.nic	chr4	-	1571	10	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	73.7735942588982	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147953019	147945247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_97616.known	chr4	-	1813	10	FSM	ENSMUSG00000029022.19	ENSMUST00000030886.15	1813	10	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	26.1538657058192	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAAGCCTCTCTTTTTTTT	NA	False	NA	1	True	AATAAA	-29	NA	147953176	147945234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_97620.nic	chr4	-	1882	9	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-21	0	intron_retention	FALSE	canonical	3	28	junction_1	78.0940938867979	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147953001	147945247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_97623.known	chr4	-	1909	9	FSM	ENSMUSG00000029022.19	ENSMUST00000156374.9	1909	9	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_8	23.8995292840675	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952956	147945247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_97624.nic	chr4	-	1845	8	NIC	ENSMUSG00000029022.19	novel	1909	9	NA	NA	-21	0	intron_retention	FALSE	canonical	3	19	junction_4	85.7195236494807	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147953001	147945247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_97625.nic	chr4	-	2048	8	NIC	ENSMUSG00000029022.19	novel	1909	9	NA	NA	-37	0	intron_retention	FALSE	canonical	3	219	junction_7	24.6915667665654	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147953017	147945247	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_97635.known	chr4	-	4043	19	FSM	ENSMUSG00000029020.14	ENSMUST00000105715.8	4043	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_18	19.4380942011515	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAATGGAAAGACAGTGT	NA	False	NA	NA	False	NA	NA	NA	147989155	147958472	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147959916_147961407_147961543_147963170_147963368_147964398_147964555_147966473_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147988906
transcript_97636.known	chr4	-	4241	19	FSM	ENSMUSG00000029020.14	ENSMUST00000105716.9	4241	19	0	0	0	0	multi-exon	TRUE	canonical	2	51	junction_4	9.87139526330723	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTCTCTGCCTGCAG	NA	False	NA	-4	True	AATAAA	-19	NA	147989144	147958055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147959916_147961407_147961543_147963170_147963368_147964398_147964555_147966473_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147989114
transcript_97638.known	chr4	-	2427	15	FSM	ENSMUSG00000029020.14	ENSMUST00000105714.8	2427	15	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	8.89421963171266	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGATGGCTCAGTGGGTA	NA	False	NA	NA	False	AATAAA	-18	NA	147989155	147965950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147989114
transcript_97640.known	chr4	-	3243	19	FSM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	12.7855049099544	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGGTCTGGTTATACTTC	NA	False	NA	NA	False	AATAAA	-39	NA	148021224	147994209	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
transcript_97643.known	chr4	-	1059	7	FSM	ENSMUSG00000019055.16	ENSMUST00000105712.2	1059	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	31.7004206070939	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTGCGACGGAGTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	148021182	148012073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148012439_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
transcript_97646.nnic	chr4	+	2710	4	NNC	ENSMUSG00000044496.7	novel	2731	3	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	243.223262776313	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTGGTCTGTGTGTGG	NA	False	NA	21	True	AATAAA	-16	NA	148025290	148031771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_148025450_148025531_148026515_148029064_148029919_148031057
transcript_97647.nnic	chr4	+	2704	4	NNC	ENSMUSG00000044496.7	novel	2731	3	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	243.223262776313	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTGGTCTGTGTGTGG	NA	False	NA	21	True	AATAAA	-16	NA	148025304	148031771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_148025458_148025531_148026515_148029064_148029919_148031057
transcript_97649.nnic	chr4	+	2676	4	NNC	ENSMUSG00000044496.7	novel	2731	3	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	243.223262776313	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTGGTCTGTGTGTGG	NA	False	NA	21	True	AATAAA	-16	NA	148025313	148031771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_148025439_148025531_148026515_148029064_148029919_148031057
transcript_97651.nnic	chr4	+	2654	4	NNC	ENSMUSG00000044496.7	novel	2731	3	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	243.223262776313	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTGGTCTGTGTGTGG	NA	False	NA	21	True	AATAAA	-16	NA	148025313	148031771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_148025439_148025553_148026515_148029064_148029919_148031057
transcript_97653.known	chr4	+	2731	3	FSM	ENSMUSG00000044496.7	ENSMUST00000103232.2	2731	3	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_1	12.5	914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTGGTCTGTGTGTGG	NA	False	NA	21	True	AATAAA	-16	NA	148025351	148031771	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148026515_148029064_148029919_148031057
transcript_97663.known	chr4	-	3306	23	FSM	ENSMUSG00000029016.14	ENSMUST00000030879.12	3306	23	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_12	12.7042811811837	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTCAGTAGTCCCCACT	7422	False	NA	NA	False	ATTAAA	-35	NA	148123270	148090590	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
transcript_97681.known	chr4	-	5198	23	FSM	ENSMUSG00000029016.14	ENSMUST00000137724.8	5198	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	28.3066151775502	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTGTCTCCACGGTGCT	7414	False	NA	-1	True	AATAAA	-22	NA	148123278	148088715	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108682_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
transcript_97685.nnic	chr4	+	2699	13	NNC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-95	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	40.2770785379917	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGCTTGCTCTTGGCCT	NA	False	NA	22	True	AAGAAA	-36	NA	148123438	148140667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_148123590_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829_148140064_148140115
transcript_97689.nnic	chr4	+	2884	13	NNC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	34.6228689677149	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGCTTGCTCTTGGCCT	NA	False	NA	22	True	AAGAAA	-36	NA	148123530	148140667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829_148140064_148140115
transcript_9769.nic	chr10	-	2285	16	ISM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	-71	15635	-71	1159	5prime_fragment	FALSE	canonical	0	0	junction_2	96.5775681339444	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTATGTAGTCCATTTGC	NA	False	NA	NA	False	NA	NA	NA	62628136	62595875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_97691.nnic	chr4	+	2889	13	NNC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	34.6228689677149	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGCTTGCTCTTGGCCT	NA	False	NA	22	True	AAGAAA	-36	NA	148123530	148140667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829_148140094_148140140
transcript_97694.nnic	chr4	+	2863	13	NNC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	41.0063511341028	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGCTTGCTCTTGGCCT	NA	False	NA	22	True	AAGAAA	-36	NA	148123530	148140667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135849_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829_148140064_148140115
transcript_97699.known	chr4	+	2652	12	FSM	ENSMUSG00000029009.18	ENSMUST00000097788.11	2652	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	31.6729151439997	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGGAGGCTTGCTCTTG	NA	False	NA	18	True	AAGAAA	-32	NA	148123533	148140663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148123590_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
transcript_97707.nic	chr4	+	2932	12	NIC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	21.8151513046846	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGGAGGCTTGCTCTTG	NA	False	NA	18	True	AAGAAA	-32	NA	148123530	148140663	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
transcript_97708.nic	chr4	+	6277	12	NIC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-3	0	intron_retention	FALSE	canonical	3	54	junction_1	21.8151513046846	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGTTTTTAAATGCTTA	NA	False	NA	17	True	ATTAAA	-21	NA	148123530	148144008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
transcript_9771.nic	chr10	-	2248	16	NIC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	-23	1084	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	114.596024751685	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGCAGAAGGAATTAGA	NA	False	NA	NA	False	NA	NA	NA	62628088	62595950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
transcript_97713.nnic	chr4	+	3664	12	NNC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-3	4	intron_retention	FALSE	canonical	0	0	junction_11	35.3915524309273	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGCTTGCTCTTGGCCT	NA	False	NA	22	True	AAGAAA	-36	NA	148123530	148140667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_148123867_148126040_148126287_148127881_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829_148140064_148140115
transcript_9772.nic	chr10	-	2210	16	ISM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	-71	15710	-71	1084	5prime_fragment	FALSE	canonical	0	0	junction_2	96.5775681339444	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGCAGAAGGAATTAGA	NA	False	NA	NA	False	NA	NA	NA	62628136	62595950	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_97733.nic	chr4	+	2449	3	ISM	ENSMUSG00000029009.18	ENSMUST00000141283.8	847	4	-85	-737	-3	737	intron_retention	FALSE	canonical	3	54	junction_1	27	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCCAGAGCTGTAGTTTG	NA	False	NA	NA	False	NA	NA	NA	148123530	148129748	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_148123867_148126040_148126287_148127881
transcript_97737.known	chr4	+	6072	12	FSM	ENSMUSG00000029009.18	ENSMUST00000069604.15	6072	12	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	32.4156884780214	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGTTTTTAAATGCTTA	NA	False	NA	17	True	ATTAAA	-21	NA	148125647	148144008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148125779_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
transcript_97739.known	chr4	-	3996	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	0	0	0	0	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGCTGTGTGATTAAT	NA	False	NA	-3	True	AATAAA	-18	NA	148172488	148161517	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
transcript_97742.nnic	chr4	-	1365	5	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	15	603	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_4	478.358913369449	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCTGTCTTGGTATGAT	NA	False	NA	-18	True	NA	NA	NA	148172473	148164370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172136
transcript_97758.known	chr4	+	1162	10	FSM	ENSMUSG00000029003.12	ENSMUST00000084129.9	1162	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	269.730638385688	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148215371	148230156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148215424_148224299_148224478_148225241_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
transcript_97764.known	chr4	+	1535	8	FSM	ENSMUSG00000029003.12	ENSMUST00000030860.9	1535	8	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_4	29.3730405338651	1001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148224638	148230156	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
transcript_97765.known	chr4	+	949	8	FSM	ENSMUSG00000029003.12	ENSMUST00000105707.2	949	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	213.795439137317	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGGATGAACATGTGTA	NA	False	NA	27	True	AATAAA	-35	NA	148225199	148230153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229582_148229654_148229828
transcript_9777.nic	chr10	-	2110	15	ISM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	-71	18970	-71	-2176	5prime_fragment	FALSE	canonical	0	0	junction_1	99.6492829469271	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGTAGACATATATATTG	NA	False	NA	NA	False	AATGAA	-10	NA	62628136	62599210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_-_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_97772.known	chr4	-	1938	6	FSM	ENSMUSG00000055401.15	ENSMUST00000105706.8	1938	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	308.087000699478	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTCATCCTGTTTG	NA	False	NA	54	True	NA	NA	NA	148236365	148230172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148235544
transcript_97773.known	chr4	-	1346	6	FSM	ENSMUSG00000055401.15	ENSMUST00000030858.14	1346	6	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_5	252.506158340742	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236370	148230243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236070
transcript_97774.known	chr4	-	811	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCAGTTCTGGAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	148236382	148230574	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
transcript_97775.known	chr4	-	1163	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236516	148230244	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
transcript_97776.known	chr4	-	952	6	FSM	ENSMUSG00000055401.15	ENSMUST00000152098.8	952	6	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_5	226.118552976088	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTAGTAATCGGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	148236597	148230465	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
transcript_97777.nnic	chr4	-	1093	6	NNC	ENSMUSG00000055401.15	novel	1346	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_5	294.890895078163	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236598	148230243	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236551
transcript_97796.known	chr4	-	1829	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCCCTGCGGCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	148244540	148237259	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
transcript_97797.known	chr4	-	823	6	FSM	ENSMUSG00000029001.16	ENSMUST00000172472.8	823	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	13.905394636615	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTGGGCCGGCTGGTAC	NA	False	NA	NA	False	NA	NA	NA	148244332	148238028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241065_148241164_148242993_148243281_148244199
transcript_97799.known	chr4	-	1034	5	FSM	ENSMUSG00000029001.16	ENSMUST00000105705.9	1034	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	15.4979837398289	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGCCTAGACCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	148244334	148237723	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148238102_148240602_148240739_148241065_148241164_148242993_148243281_148244199
transcript_97801.known	chr4	-	1403	5	FSM	ENSMUSG00000029001.16	ENSMUST00000151127.8	1403	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	3.34477204006491	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGAGCGGTGGTGGGA	NA	False	NA	NA	False	NA	NA	NA	148244308	148239954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
transcript_97805.known	chr4	+	1288	6	FSM	ENSMUSG00000041556.9	ENSMUST00000047951.9	1288	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	6.34350061086148	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCACAGATGAATGGACATC	NA	False	NA	23	True	NA	NA	NA	148245077	148250881	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
transcript_97807.nnic	chr4	-	2546	3	NNC	ENSMUSG00000047719.3	novel	576	3	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	43	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529238	148518951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_148521100_148528384_148528543_148528998
transcript_97809.known	chr4	-	576	3	FSM	ENSMUSG00000047719.3	ENSMUST00000156686.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	43.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCCATTCCAACAACACCA	NA	False	NA	NA	False	NA	NA	NA	148529218	148520945	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148521100_148528384_148528587_148528998
transcript_97810.nnic	chr4	-	2487	3	NNC	ENSMUSG00000047719.3	novel	576	3	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	31.5	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529238	148518951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_148521100_148528384_148528587_148529101
transcript_97811.known	chr4	-	2992	2	FSM	ENSMUSG00000047719.3	ENSMUST00000051633.3	2992	2	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	0	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529228	148518951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148521100_148528384
transcript_97812.known	chr4	+	8564	58	FSM	ENSMUSG00000028991.16	ENSMUST00000103221.10	8564	58	0	0	0	0	multi-exon	TRUE	canonical	2	74	junction_19	24.6853638803358	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTATGACTGGCTT	NA	False	NA	34	True	AATAAA	-23	NA	148533067	148642140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008_148539210_148540441_148540577_148543083_148543360_148543440_148543550_148547243_148547431_148548148_148548278_148548759_148549005_148549403_148549620_148550347_148550554_148552706_148552830_148553444_148553535_148553823_148553917_148554678_148554814_148555028_148555159_148556370_148556622_148565321_148565409_148568011_148568180_148568766_148568880_148569082_148569246_148570505_148570599_148571232_148571380_148573932_148574076_148575791_148575955_148576077_148576224_148596227_148596304_148599282_148599423_148605748_148605850_148608915_148609032_148610180_148610259_148610454_148610563_148614938_148615065_148615134_148615267_148618318_148618435_148619364_148619483_148620967_148621217_148621818_148621920_148622319_148622417_148622732_148622832_148622919_148623043_148623184_148623368_148624437_148624573_148624741_148624917_148628875_148629012_148629966_148630115_148630854_148630978_148632060_148632144_148633824_148633898_148634247_148634323_148634544_148634681_148635415_148635482_148637168_148637250_148637487_148637569_148640723_148640830_148641301
transcript_97817.known	chr4	+	1003	5	FSM	ENSMUSG00000028991.16	ENSMUST00000057580.8	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	19.0656759649376	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGGCCTCTGACTATGG	NA	False	NA	16	True	AATAAA	-22	NA	148533081	148539430	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008
transcript_97825.known	chr4	+	2773	25	FSM	ENSMUSG00000017264.17	ENSMUST00000173154.8	2773	25	0	0	0	0	multi-exon	TRUE	canonical	2	11	junction_23	124.10724948608	995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGAAGAAAGATGGTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	148642887	148666847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666218_148666292_148666740
transcript_97827.known	chr4	+	2816	25	FSM	ENSMUSG00000017264.17	ENSMUST00000097781.11	2816	25	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_15	122.740912483256	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGATGGTTCTTGG	NA	False	NA	NA	False	ATTAAA	-14	NA	148642911	148666850	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657487_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
transcript_97837.known	chr4	+	2682	24	FSM	ENSMUSG00000017264.17	ENSMUST00000076022.7	2682	24	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_18	124.035058157659	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642918	148666858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
transcript_9785.known	chr10	-	3178	9	FSM	ENSMUSG00000020074.8	ENSMUST00000217940.2	3178	9	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_8	57.085325391032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATGAGACAAATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	62628049	62605587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_97893.known	chr4	+	1338	7	FSM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	0	0	0	0	multi-exon	FALSE	canonical	3	3072	junction_6	112.657297440808	1778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCATTTTTGTTCCTA	8716	False	NA	28	True	AATACA	-36	NA	148675959	148679076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148676244_148676500_148676622_148676938_148677032_148677744_148677899_148678224_148678455_148678539_148678663_148678743
transcript_97897.nic	chr4	+	1450	6	ISM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	-50	19	-50	-19	intron_retention	FALSE	canonical	3	3092	junction_5	102.267101259398	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGTCATGACCTCTGAC	8666	False	NA	9	True	AATACA	-17	NA	148675909	148679057	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_148676244_148676500_148676622_148676938_148677032_148677744_148677899_148678224_148678455_148678539
transcript_9790.nnic	chr10	-	689	6	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	-10	-1583	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	144.804696056447	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAACTTGTTGCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	62628075	62617827	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_62618072_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_97909.nic	chr4	-	1159	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	406.055741624377	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711252	148701182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_148701302_148702022_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_9791.known	chr10	-	3862	25	FSM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	85.6392222576133	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGTCTTTTATTGAAGT	NA	False	NA	1	True	AATAAA	-35	NA	62628065	62580240	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_97911.known	chr4	-	2006	8	FSM	ENSMUSG00000041459.16	ENSMUST00000045180.14	2006	8	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_2	361.175800938647	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGATCGTGAGTTATTG	NA	False	NA	NA	False	NA	NA	NA	148711222	148700375	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148701302_148702022_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_97912.nic	chr4	-	1499	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	3	168	junction_2	371.00008251278	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711531	148701182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_97918.known	chr4	-	1304	8	FSM	ENSMUSG00000041459.16	ENSMUST00000191450.7	1304	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	409.46231542732	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAGTCAAATGGATTCA	NA	False	NA	-11	True	AATAAA	-17	NA	148711215	148701181	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148701302_148702022_148702283_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_97925.nic	chr4	-	2192	7	NIC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	-29	0	intron_retention	FALSE	canonical	3	409	junction_1	257.510949066033	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711256	148701182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_97927.known	chr4	-	6425	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105702.9	6425	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	393.959811825183	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711453	148696838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_97928.known	chr4	-	6513	7	FSM	ENSMUSG00000041459.16	ENSMUST00000172073.8	6513	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	389.131261772797	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711453	148696838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148702163_148703103_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_97929.nic	chr4	-	2210	7	NIC	ENSMUSG00000041459.16	novel	6495	7	NA	NA	-55	-2	intron_retention	FALSE	canonical	3	28	junction_1	398.788756388921	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTCTTTGTTTTGCAG	NA	False	NA	NA	False	AATAAA	-15	NA	148711531	148701321	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_148702283_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_97931.known	chr4	-	1904	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105699.8	1904	7	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	346.808024064547	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711215	148701182	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_97933.known	chr4	-	7477	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	0	0	0	0	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711476	148696838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_97936.known	chr4	+	738	5	FSM	ENSMUSG00000028979.18	ENSMUST00000105701.9	738	5	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	7.49583217528247	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGGCTGTGTGTCTCT	NA	False	NA	5	True	AATAAA	-15	NA	148687010	148688874	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_148687048_148687124_148687354_148687448_148687627_148688143_148688276_148688712
transcript_97939.known	chr4	-	370	2	FSM	ENSMUSG00000041459.16	ENSMUST00000190478.2	370	2	0	0	0	0	multi-exon	FALSE	canonical	3	1096	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGACTTCCGTGCCATCT	NA	False	NA	NA	False	NA	NA	NA	148711215	148709541	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148709834_148711137
transcript_97940.known	chr4	-	741	6	FSM	ENSMUSG00000041459.16	ENSMUST00000190552.7	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	398.328206382626	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGATTCATCACCTGTC	NA	False	NA	-2	True	AATAAA	-26	NA	148706447	148701172	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405
transcript_97942.nic	chr4	+	2713	5	ISM	ENSMUSG00000028977.18	ENSMUST00000122222.8	7926	21	141431	1560	-1142	758	3prime_fragment	FALSE	canonical	2	3	junction_3	1.87082869338697	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTAAAACAAAAAAAACAAAA	NA	False	NA	NA	False	AAAAAG	-33	NA	149030316	149037786	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_149030679_149031446_149031619_149032980_149033133_149033249_149033392_149035901
transcript_97946.nic	chr4	-	1863	3	ISM	ENSMUSG00000028975.17	ENSMUST00000148203.2	514	4	0	25662	0	-25662	5prime_fragment	FALSE	canonical	3	405	junction_2	15.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAAGAAACCCAGTTG	NA	False	NA	NA	False	NA	NA	NA	149184285	149124504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_149126263_149160476_149160525_149184228
transcript_97948.known	chr4	+	2457	6	FSM	ENSMUSG00000028974.14	ENSMUST00000030816.4	2457	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	2.13541565040626	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTGCCTTTGTTTGTC	NA	False	NA	6	True	AATAAA	-16	NA	149188602	149205104	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202381_149203535
transcript_97949.nnic	chr4	+	1202	6	NNC	ENSMUSG00000028974.14	novel	2457	6	NA	NA	-22	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.7608139294157	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGGGTGGGGGAAGGGA	NA	False	NA	NA	False	AAAAAG	-4	NA	149188580	149203346	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202588_149203261
transcript_97950.known	chr4	+	1835	5	FSM	ENSMUSG00000028974.14	ENSMUST00000103216.10	1835	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	2.34520787991171	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	149188602	149203327	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228
transcript_97956.nnic	chr4	-	3602	7	Fusion	ENSMUSG00000073705.11_ENSMUSG00000028971.5	novel	1110	5	NA	NA	-4	-158	multi-exon	FALSE	canonical	2	5	junction_1	181.474209982821	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGAGCTTTCTTCTTATG	NA	False	NA	-5	True	AATAAA	-14	NA	149222090	149209648	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_-_149209931_149210312_149211603_149211738_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
transcript_97960.nic	chr4	-	3932	6	Fusion	ENSMUSG00000073705.11_ENSMUSG00000028971.5	novel	1110	5	NA	NA	-5	-159	intron_retention	FALSE	canonical	3	22	junction_1	152.355374043714	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGAGCTTTCTTCTTAT	NA	False	NA	-6	True	AATAAA	-13	NA	149222039	149209649	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	Fusion_chr4_-_149211603_149211738_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
transcript_97962.known	chr4	-	689	5	FSM	ENSMUSG00000073705.11	ENSMUST00000177408.2	689	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	159.066809863026	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCAATCAGCTGTGCTG	NA	False	NA	-144	True	NA	NA	NA	149222026	149212996	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216734_149216840_149221932
transcript_97966.known	chr4	-	1110	5	FSM	ENSMUSG00000073705.11	ENSMUST00000030813.10	1110	5	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_3	40.8923892674419	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGTCTGCTTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	149222086	149212654	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
transcript_97971.known	chr4	-	2218	13	FSM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	0	0	0	0	multi-exon	FALSE	canonical	1	98	junction_7	73.9915066447194	1327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	False	NA	-8	True	AATAAA	-16	NA	149251164	149234447	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
transcript_97991.known	chr4	-	5992	47	FSM	ENSMUSG00000063077.16	ENSMUST00000055647.15	5992	47	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_23	26.5390624108764	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTTCTCTCT	7426	False	NA	NA	False	NA	NA	NA	149391963	149264692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149265268_149265940_149266060_149266265_149266459_149266724_149266875_149268765_149268888_149270559_149270632_149272047_149272288_149272455_149272602_149274179_149274242_149275605_149275740_149277029_149277145_149282888_149282995_149283714_149283800_149286964_149287032_149288642_149288752_149291174_149291231_149292305_149292425_149294498_149294590_149297752_149297916_149298079_149298210_149298535_149298622_149299363_149299483_149304998_149305248_149306683_149306822_149307686_149307866_149309546_149309696_149310719_149310814_149329794_149329868_149329998_149330180_149330793_149330878_149331684_149331792_149332261_149332342_149336197_149336274_149338128_149338209_149342326_149342461_149346592_149346736_149347155_149347235_149348071_149348148_149350708_149350775_149351662_149351741_149354318_149354431_149355173_149355353_149358237_149358304_149359372_149359553_149361303_149361381_149375758_149375934_149391885
transcript_97996.known	chr4	-	6991	21	FSM	ENSMUSG00000063077.16	ENSMUST00000030806.6	6991	21	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	18.6480561989715	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGGCATGATCTTTAAG	7309	False	NA	NA	False	AATAAA	-16	NA	149392080	149318190	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149322941_149329794_149329868_149329998_149330180_149330793_149330878_149331684_149331792_149332261_149332342_149336197_149336274_149338128_149338209_149342326_149342461_149346592_149346736_149347155_149347235_149348071_149348148_149350708_149350775_149351662_149351741_149354318_149354431_149355173_149355353_149358237_149358304_149359372_149359553_149361303_149361381_149375758_149375934_149391885
transcript_97998.nnic	chr4	-	3524	21	NIC	ENSMUSG00000063077.16	novel	6991	21	NA	NA	-102	-3717	combination_of_known_splicesites	FALSE	canonical	3	8	junction_9	27.3957569707427	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAAGAAAAAGTGGGCAGA	7137	False	NA	NA	False	NA	NA	NA	149392252	149321907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_149322941_149329794_149329868_149329998_149330180_149330793_149330878_149331684_149331792_149332261_149332342_149336197_149336274_149338128_149338209_149342326_149342539_149346592_149346736_149347155_149347235_149348071_149348148_149350708_149350775_149351662_149351741_149354318_149354431_149355173_149355353_149358237_149358304_149359372_149359553_149361303_149361381_149375758_149375934_149391885
transcript_98004.known	chr4	-	2980	9	FSM	ENSMUSG00000063077.16	ENSMUST00000150230.2	2980	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	12.9077253999301	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAAATTCAGATCA	7239	False	NA	NA	False	AAAAAG	-19	NA	149392150	149348926	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149350775_149351662_149351741_149354318_149354431_149355173_149355353_149358237_149358304_149359372_149359553_149361303_149361381_149375758_149375934_149391885
transcript_98008.known	chr4	-	5626	27	FSM	ENSMUSG00000028960.21	ENSMUST00000103212.10	5626	27	0	0	0	0	multi-exon	TRUE	canonical	3	203	junction_22	27.7325828917206	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTGTGAGTCGTCTTT	NA	False	NA	-2	True	AATAAA	-23	NA	149511206	149412872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149414195_149414647_149414795_149415779_149415955_149419568_149419761_149421841_149421977_149427335_149427481_149428971_149429099_149432383_149432620_149435114_149435214_149435914_149436043_149437384_149437485_149439874_149440014_149442081_149442281_149443653_149443768_149444734_149444834_149444916_149445034_149445740_149445798_149449910_149449995_149452757_149452873_149455615_149455717_149457284_149457427_149465639_149465869_149468194_149468340_149469581_149469670_149471537_149471674_149483055_149483243_149510338
transcript_9801.nic	chr10	-	6246	13	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	128	-67	combination_of_known_junctions	FALSE	canonical	3	87	junction_3	53.2569765904483	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGCAGACCGGGAGTGTC	NA	False	NA	18	True	AAAAAG	-14	NA	62728637	62648467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62728473
transcript_98021.known	chr4	-	621	2	FSM	ENSMUSG00000028960.21	ENSMUST00000173005.2	621	2	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTGTCTTGCTTCTGTC	NA	False	NA	NA	False	ATTAAA	-30	NA	149510673	149482956	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149483243_149510338
transcript_98022.known	chr4	-	1238	5	FSM	ENSMUSG00000028992.14	ENSMUST00000030845.13	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.60298815988049	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTAAATCAATTTTTCT	1652	False	NA	34	True	ACTAAA	-20	NA	149569655	149553015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149553669_149554096_149554240_149557741_149557926_149558884_149559053_149569565
transcript_98025.known	chr4	-	2657	4	FSM	ENSMUSG00000028992.14	ENSMUST00000119921.8	2657	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.98887651569859	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGGACGACTACCCTCT	1648	False	NA	-7	True	AATAAA	-17	NA	149569659	149552028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149554240_149557741_149557926_149558884_149559053_149569565
transcript_98031.nnic	chr4	+	3032	9	NNC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	-25	1833	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	74.7185343472421	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAACATTTCTGCACAAA	NA	False	NA	NA	False	NA	NA	NA	149569660	149582958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_149569731_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536_149581602_149581725
transcript_98034.nnic	chr4	+	1323	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	53	junction_1	51.1324809905103	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569660	149581125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_149569731_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
transcript_98040.nic	chr4	+	1582	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	24	0	intron_retention	FALSE	canonical	3	32	junction_1	58.2405287035881	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569720	149581125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_149570050_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
transcript_98041.known	chr4	+	1817	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	14.9517743280039	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569750	149581125	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
transcript_98042.known	chr4	+	359	4	FSM	ENSMUSG00000028990.14	ENSMUST00000124413.8	359	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	85.3867020612044	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGATTCGCTGAAGAAGAT	NA	False	NA	NA	False	AAAAAG	-28	NA	149569685	149572579	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_149569731_149570318_149570457_149571208_149571318_149572512
transcript_98049.known	chr4	+	2674	5	FSM	ENSMUSG00000028988.14	ENSMUST00000030839.13	2674	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	7.98044484975618	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGTGAGCTGAGCTGGT	NA	False	NA	9	True	AATAAA	-16	NA	149602692	149650894	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_149602837_149624285_149624371_149630167_149630289_149630858_149630950_149648661
transcript_98052.known	chr4	+	3319	19	FSM	ENSMUSG00000039953.14	ENSMUST00000039144.7	3319	19	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	165.993641109799	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACGCAGTCAGTAACCATT	NA	False	NA	NA	False	NA	NA	NA	149671094	149732356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_149671230_149698506_149698630_149710543_149710574_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
transcript_98055.known	chr4	+	4459	18	FSM	ENSMUSG00000039953.14	ENSMUST00000105691.8	4459	18	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_9	51.7981175594149	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGTGGGGTCCATTCT	NA	False	NA	24	True	AATAAA	-19	NA	149670924	149733356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_149671230_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
transcript_98058.nnic	chr4	+	4386	18	NNC	ENSMUSG00000039953.14	novel	822	4	NA	NA	13079	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	133.140142623683	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGTGGGGTCCATTCT	NA	False	NA	24	True	AATAAA	-19	NA	149684783	149733356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_149685016_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
transcript_98064.known	chr4	-	4335	25	FSM	ENSMUSG00000039936.19	ENSMUST00000105688.10	4335	25	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_23	6.83892048011478	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGCAGCTGGGGAGCTA	NA	False	NA	NA	False	NA	NA	NA	149783062	149734273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532_149758652_149781505_149781681_149783011
transcript_98066.known	chr4	-	4894	24	FSM	ENSMUSG00000039936.19	ENSMUST00000118704.8	4894	24	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	6.93202207560758	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTCTTGGCTCAAATAA	NA	False	NA	-3	True	AATAAA	-17	NA	149760501	149733627	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739715_149739792_149739958_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532_149758652_149760368
transcript_98067.known	chr4	-	4921	24	FSM	ENSMUSG00000039936.19	ENSMUST00000105690.9	4921	24	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_23	6.4283163750526	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCTTGGCTCAAATAACAA	NA	False	NA	0	True	AATAAA	-20	NA	149783165	149733624	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739715_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532_149758652_149783011
transcript_98070.known	chr4	-	824	3	FSM	ENSMUSG00000039936.19	ENSMUST00000137430.8	824	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTTTCATTCTTTCT	NA	False	NA	NA	False	AATAAA	-11	NA	149760550	149757895	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149758419_149758532_149758652_149760368
transcript_98077.nnic	chr4	-	3704	11	NNC	ENSMUSG00000044700.16	novel	3697	11	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	103.549022206876	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTGTGTTTTCTTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	149822562	149799831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_149801535_149802476_149802615_149803107_149803348_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
transcript_98081.known	chr4	-	3697	11	FSM	ENSMUSG00000044700.16	ENSMUST00000105687.9	3697	11	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	67.7469556511582	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTGTGTTTTCTTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	149822501	149799831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149801535_149802476_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
transcript_98089.known	chr4	-	4631	10	FSM	ENSMUSG00000044700.16	ENSMUST00000054459.11	4631	10	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	68.5966921421107	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTATCAGGCTGTGTT	NA	False	NA	-9	True	AATAAA	-17	NA	149822501	149799839	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
transcript_98095.known	chr4	-	3620	6	FSM	ENSMUSG00000044700.16	ENSMUST00000103208.2	3620	6	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_5	21.9508541975022	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGCGTCTTTTTTTCTTTC	NA	False	NA	-8	True	AATAAA	-39	NA	149822501	149809320	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
transcript_98096.known	chr4	-	1403	4	FSM	ENSMUSG00000044700.16	ENSMUST00000140889.8	1403	4	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_3	26.106618998935	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAAAAAAAATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	149822455	149813246	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149814170_149815519_149815715_149816292_149816414_149822291
transcript_98102.known	chr4	-	1887	7	FSM	ENSMUSG00000028982.10	ENSMUST00000105686.3	1887	7	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_5	32.4623713791146	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATATTTTCCTGCATTT	NA	False	NA	NA	False	AATAAA	-20	NA	149858734	149828492	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149846823_149847004_149858456
transcript_98121.known	chr4	-	3092	3	FSM	ENSMUSG00000039911.14	ENSMUST00000038562.9	3092	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	6.5	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCGAGTCCTTTCGTGC	NA	False	NA	3	True	AATAAA	-24	NA	150039500	149980739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_149982799_149990872_149991715_150039309
transcript_98127.known	chr4	-	4745	5	FSM	ENSMUSG00000028980.15	ENSMUST00000030830.4	4745	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	7.96868872525461	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGAGTTGATAAACAGTG	NA	False	NA	0	True	ATTAAA	-26	NA	150093480	150063931	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_150067379_150068359_150068630_150078925_150079044_150080201_150080839_150093207
transcript_98130.nic	chr4	-	1376	2	ISM	ENSMUSG00000028980.15	ENSMUST00000030830.4	4745	5	-80	15884	-80	489	5prime_fragment	FALSE	canonical	3	72	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGAATGCTGTCTTGA	NA	False	NA	NA	False	AATAAA	-14	NA	150093560	150079815	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_150080839_150093207
transcript_98131.known	chr4	+	2459	1	FSM	ENSMUSG00000102813.2	ENSMUST00000194216.2	2459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTAAAGAAGAAAGAAGAAAA	4085	False	NA	NA	False	NA	NA	NA	150152995	150155454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_150153000_150155500
transcript_98132.known	chr4	+	4900	4	FSM	ENSMUSG00000047875.7	ENSMUST00000094451.4	4900	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.88561808316413	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGTGTGATGTTAACTC	NA	False	NA	NA	False	ATTAAA	-18	NA	150171821	150190384	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_150172594_150183214_150183429_150186036_150186235_150186668
transcript_98134.known	chr4	+	3158	14	FSM	ENSMUSG00000028976.11	ENSMUST00000030826.4	3158	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.85893014978378	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCATGCAACTGGCTCAAGA	5625	False	NA	NA	False	AATAAA	-17	NA	150203739	150228626	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_150204008_150204111_150204506_150205140_150205223_150210046_150210146_150210582_150210744_150213499_150213625_150220000_150220154_150223877_150224004_150224087_150224276_150224386_150224498_150225215_150225318_150226634_150226711_150227256_150227385_150227481
transcript_98135.nic	chr4	+	2849	13	NIC	ENSMUSG00000028976.11	novel	3158	14	NA	NA	-3	-416	intron_retention	FALSE	canonical	1	2	junction_6	1.53432938662683	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCAAGACATAGCAGTTC	5622	False	NA	NA	False	AATAAA	-18	NA	150203736	150228210	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_150204506_150205140_150205223_150210046_150210146_150210582_150210744_150213499_150213625_150220000_150220154_150223877_150224004_150224087_150224276_150224386_150224498_150225215_150225318_150226634_150226711_150227256_150227385_150227481
transcript_98147.nic	chr4	+	1506	6	ISM	ENSMUSG00000062064.7	ENSMUST00000059893.8	1578	12	9366	-542	510	542	3prime_fragment	FALSE	canonical	3	15	junction_5	2.57681974534502	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTATTTGGGCTCCGGTTC	1872	False	NA	NA	False	NA	NA	NA	150242794	150253481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_150243123_150244475_150244587_150247654_150247757_150249565_150249642_150250811_150250940_150252720
transcript_98148.known	chr4	-	1460	7	FSM	ENSMUSG00000028972.12	ENSMUST00000105683.9	1460	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.44802681092953	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTACTATTCTTTT	NA	False	NA	2	True	AATAAA	-28	NA	150282927	150271471	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_150271966_150273577_150273702_150276931_150277090_150278164_150278235_150280512_150280606_150281774_150281924_150282555
transcript_98153.known	chr4	+	2027	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	0	0	0	0	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGCATCTCATTTGTG	NA	False	NA	5	True	AATAAA	-22	NA	150321408	150333336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
transcript_98167.nic	chr4	+	4571	10	NIC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	-33	0	intron_retention	FALSE	canonical	3	2891	junction_7	4050.42165157599	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150321663	150333330	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_150321798_150323929_150324024_150325501_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
transcript_9817.nic	chr10	-	4411	4	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	120	921	combination_of_known_junctions	FALSE	canonical	3	182	junction_3	31.4572019664107	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTACTCACTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	62728645	62673954	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62676158_62700586_62700641_62713930_62715913_62728473
transcript_98174.known	chr4	+	1878	3	FSM	ENSMUSG00000063524.14	ENSMUST00000130632.8	1878	3	0	0	0	0	multi-exon	FALSE	canonical	3	15633	junction_2	329.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATCATTT	NA	False	NA	NA	False	NA	NA	NA	150321696	150327184	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_150321798_150323929_150324024_150325501
transcript_98175.known	chr4	+	562	2	FSM	ENSMUSG00000063524.14	ENSMUST00000148605.2	562	2	0	0	0	0	multi-exon	FALSE	canonical	3	16292	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCCCAACCTGTGCTA	NA	False	NA	NA	False	NA	NA	NA	150321699	150324393	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_150321798_150323929
transcript_98176.nic	chr4	+	2693	17	ISM	ENSMUSG00000039852.18	ENSMUST00000105682.9	7728	23	-116	7726	-116	2171	5prime_fragment	FALSE	canonical	3	64	junction_3	21.242645786248	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAAGACCCAGGTGAGGC	NA	False	NA	NA	False	NA	NA	NA	150365986	150698697	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_150366533_150490652_150491122_150515979_150516051_150523799_150523926_150553151_150553258_150554751_150554849_150561820_150561926_150584459_150584509_150593286_150593412_150594395_150594496_150619303_150619403_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596
transcript_9818.nic	chr10	-	3756	4	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	46	143	combination_of_known_junctions	FALSE	canonical	3	63	junction_3	85.1873751731375	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCAGCCCGAAGCTCTCA	2849	False	NA	47	True	AAAAAG	-40	NA	62723245	62674732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62676158_62700586_62700641_62713930_62715913_62722950
transcript_98186.nic	chr4	+	711	2	ISM	ENSMUSG00000039852.18	ENSMUST00000105682.9	7728	23	-116	215606	-116	-64021	5prime_fragment	FALSE	canonical	3	85	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACAAAGACAAAGAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	150365986	150490817	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_150366533_150490652
transcript_98187.known	chr4	-	3387	9	FSM	ENSMUSG00000039838.12	ENSMUST00000037827.10	3387	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.31695671910659	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTAATCTCTTGGGCATA	NA	False	NA	NA	False	NA	NA	NA	150736631	150713028	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_150714255_150715374_150715581_150717769_150717947_150719343_150719498_150722430_150723168_150726902_150727128_150727745_150727839_150728404_150728826_150736483
transcript_98188.known	chr4	+	3043	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATGTGTCTTGTCTAAA	3781	False	NA	NA	False	AATAAA	-28	NA	150939529	150953344	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
transcript_98194.known	chr4	-	919	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105673.8	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	2143.40985477709	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTAGTATGTGAAGCA	NA	False	NA	-107	True	NA	NA	NA	150994108	150981695	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150993847
transcript_98195.known	chr4	-	908	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	0	0	0	0	multi-exon	FALSE	canonical	3	5402	junction_3	199.85446093484	2218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994383	150981589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
transcript_98196.nnic	chr4	-	867	7	NNC	ENSMUSG00000028964.15	novel	908	7	NA	NA	16	0	intron_retention	FALSE	canonical	3	153	junction_6	2090.71572673092	197	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994367	150981589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994264
transcript_98197.known	chr4	-	882	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105675.8	882	7	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_6	2038.03331806807	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	5729	False	NA	-1	True	AATAAA	-26	NA	150998894	150981589	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150998776
transcript_9820.nic	chr10	-	3798	4	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-45	143	combination_of_known_junctions	FALSE	canonical	3	182	junction_3	31.4572019664107	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCAGCCCGAAGCTCTCA	NA	False	NA	47	True	AAAAAG	-40	NA	62728810	62674732	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62676158_62700586_62700641_62713930_62715913_62728473
transcript_98213.known	chr4	-	640	5	FSM	ENSMUSG00000028964.15	ENSMUST00000148626.2	640	5	0	0	0	0	multi-exon	FALSE	canonical	3	5402	junction_1	165.252080168451	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAGCAAACAGCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	150994285	150988015	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
transcript_98216.known	chr4	-	478	4	FSM	ENSMUSG00000028964.15	ENSMUST00000134751.8	478	4	0	0	0	0	multi-exon	FALSE	canonical	3	5627	junction_3	104.487107125978	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGGCAGTGAGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	150994325	150989582	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_150989767_150991496_150991599_150992774_150992881_150994239
transcript_98230.known	chr4	-	4961	12	FSM	ENSMUSG00000014592.22	ENSMUST00000105670.8	4961	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_7	4.69217741838689	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCTTTCTGGCTGCACG	NA	False	NA	NA	False	AATAAA	-13	NA	151193033	151144270	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_151147313_151158444_151158520_151159548_151159743_151162320_151162393_151163237_151163485_151164143_151164332_151168133_151168319_151169019_151169336_151170016_151170096_151170470_151170668_151173286_151173439_151192819
transcript_98235.nic	chr4	-	3668	12	NIC	ENSMUSG00000014592.22	novel	4961	12	NA	NA	18	-1614	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	5.03541179059136	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCTACTGTATTTAGACT	NA	False	NA	NA	False	AATAAA	-3	NA	151193015	151145884	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_151147313_151158444_151158520_151159548_151159743_151162320_151162393_151163237_151163485_151164143_151164332_151168133_151168658_151169019_151169336_151170016_151170096_151170470_151170668_151173286_151173439_151192819
transcript_98237.nic	chr4	-	3523	12	NIC	ENSMUSG00000014592.22	novel	4961	12	NA	NA	36	-1741	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	5.03541179059136	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAGCATTAGTGGCTATG	NA	False	NA	NA	False	ATTAAA	-37	NA	151192997	151146011	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_151147313_151158444_151158520_151159548_151159743_151162320_151162393_151163237_151163485_151164143_151164332_151168133_151168658_151169019_151169336_151170016_151170096_151170470_151170668_151173286_151173439_151192819
transcript_98247.nnic	chr4	-	2374	6	NNC	ENSMUSG00000014592.22	novel	2178	6	NA	NA	-29	2	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	485.492492217954	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGGGCCACTAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	151946232	151864907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_151866589_151874741_151875011_151876875_151876960_151914874_151914994_151920270_151920341_151946081
transcript_98248.known	chr4	-	2178	6	FSM	ENSMUSG00000014592.22	ENSMUST00000153938.3	2178	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	486.741574143816	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAGTGGGCCACTAGTGT	NA	False	NA	NA	False	NA	NA	NA	151946161	151864909	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_151866589_151874864_151875011_151876875_151876960_151914874_151914994_151920270_151920341_151946081
transcript_98252.known	chr4	-	2198	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	0	0	0	0	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTACTTGCTTTTTTAG	NA	False	NA	NA	False	AATACA	-12	NA	151946161	151875030	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
transcript_98253.known	chr4	-	506	3	FSM	ENSMUSG00000014592.22	ENSMUST00000135780.2	506	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	493.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTCATCTTTTTAAAA	NA	False	NA	-23	True	AATAAA	-10	NA	151946195	151876686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_151876960_151914874_151914994_151946081
transcript_98254.known	chr4	+	1999	7	FSM	ENSMUSG00000028965.14	ENSMUST00000105672.10	1999	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.34370962471642	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTTTTTTCGCTTCA	7527	False	NA	NA	False	ATTAAA	-21	NA	151004611	151030559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_151004718_151014277_151014403_151015185_151015291_151016764_151016903_151017489_151017560_151018743_151018869_151029229
transcript_98255.known	chr4	-	2139	12	FSM	ENSMUSG00000028957.13	ENSMUST00000128283.2	2139	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.23315090602278	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCAGATTTTTAGTCTGT	321	False	NA	NA	False	AATAAA	-18	NA	151129122	151108646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_151108997_151109528_151109658_151110569_151110676_151113205_151113363_151113592_151113700_151116369_151116449_151118313_151118454_151122345_151122395_151125728_151125931_151127132_151127249_151128015_151128162_151128564
transcript_98259.known	chr4	-	2120	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCGTGTTTCTTGGAGTG	NA	False	NA	3	True	AATAAA	-22	NA	151142410	151131756	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
transcript_9826.nic	chr10	-	3490	4	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	120	0	combination_of_known_junctions	FALSE	canonical	3	182	junction_3	31.4572019664107	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACACAGTCAGGAGAAA	NA	False	NA	-96	True	NA	NA	NA	62728645	62674875	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62676158_62700586_62700641_62713930_62715913_62728473
transcript_98267.known	chr4	+	3151	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	1885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGGCTATGTGGCTT	9070	False	NA	NA	False	NA	NA	NA	152018147	152066594	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
transcript_9830.known	chr10	-	553	2	FSM	ENSMUSG00000047146.18	ENSMUST00000227494.2	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAGCAATTAATTAAAAGA	NA	False	NA	-19	True	NA	NA	NA	62728765	62715651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62715913_62728473
transcript_98305.known	chr4	+	688	4	FSM	ENSMUSG00000039768.17	ENSMUST00000133959.8	688	4	0	0	0	0	multi-exon	FALSE	canonical	3	865	junction_1	56.0079359456219	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCCTTCATCATCCCAG	9113	False	NA	NA	False	NA	NA	NA	152018190	152041952	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559
transcript_9831.known	chr10	-	414	2	FSM	ENSMUSG00000047146.18	ENSMUST00000218438.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAGCAATTAATTAAAAGA	2991	False	NA	-19	True	NA	NA	NA	62723103	62715651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62715913_62722950
transcript_98311.known	chr4	-	1124	4	FSM	ENSMUSG00000039759.11	ENSMUST00000036680.8	1124	4	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	10.8730042868667	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGGCTGTCACTCGGTT	NA	False	NA	-3	True	AATAAA	-16	NA	152073454	152067095	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152067810_152068091_152068194_152070125_152070319_152073339
transcript_98313.known	chr4	-	832	3	FSM	ENSMUSG00000039759.11	ENSMUST00000105665.3	832	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	59.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGAGAGCTGGTCATTCT	NA	False	NA	NA	False	NA	NA	NA	152073427	152067258	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152067810_152070125_152070319_152073339
transcript_98314.known	chr4	-	501	2	FSM	ENSMUSG00000039759.11	ENSMUST00000146471.2	501	2	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCCCATCTCCAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	152073437	152069915	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152070319_152073339
transcript_98317.known	chr4	-	3205	4	FSM	ENSMUSG00000047777.10	ENSMUST00000055688.10	3205	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	6.59966329107444	488	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCTGTGCCTCCTTAGG	NA	False	NA	-5	True	AATAAA	-15	NA	152080715	152074089	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152076237_152076526_152077050_152078446_152078549_152080282
transcript_98318.nnic	chr4	+	3817	5	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	72	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	45.4175076374739	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGCTGGGTGTCATGGC	6470	False	NA	9	True	AATAAA	-9	NA	152093331	152102133	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791_152101371_152101463
transcript_98319.nnic	chr4	+	3823	5	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	72	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	45.4175076374739	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGGTGTCATGGCCTTC	6470	False	NA	13	True	AATAAA	-13	NA	152093331	152102137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791_152101389_152101479
transcript_98320.nnic	chr4	+	3817	5	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	72	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	45.4175076374739	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGGTGTCATGGCCTTC	6470	False	NA	13	True	AATAAA	-13	NA	152093331	152102137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791_152101435_152101531
transcript_98321.known	chr4	+	3986	4	FSM	ENSMUSG00000073700.4	ENSMUST00000097773.4	3986	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_1	3.39934634239519	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGGTGTCATGGCCTTC	6398	False	NA	13	True	AATAAA	-13	NA	152093259	152102137	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152094421_152096756_152097163_152098763_152098837_152099791
transcript_98327.known	chr4	-	2218	11	FSM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	11.2782977438973	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTGTCTGTTCCTTGG	8679	False	NA	-1	True	AATAAA	-18	NA	152112118	152104230	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
transcript_98328.nic	chr4	-	2243	11	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	-39	0	intron_retention	FALSE	canonical	2	3	junction_10	15.9715371833772	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCAGTGTCTGTTCCTT	8630	False	NA	-3	True	AATAAA	-16	NA	152112167	152104232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152112021
transcript_98329.nnic	chr4	-	2158	11	NNC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	-61	0	intron_retention	FALSE	canonical	2	3	junction_10	15.9715371833772	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCAGTGTCTGTTCCTT	8608	False	NA	-3	True	AATAAA	-16	NA	152112189	152104232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152112128
transcript_98330.nic	chr4	-	2375	11	NIC	ENSMUSG00000028952.13	novel	2709	10	NA	NA	-34	0	intron_retention	FALSE	canonical	3	16	junction_7	13.8506317545446	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCAGTGTCTGTTCCTT	8635	False	NA	-3	True	AATAAA	-16	NA	152112162	152104232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106692_152107152_152107265_152110234_152110477_152110844_152111517_152111999
transcript_98336.known	chr4	-	2709	10	FSM	ENSMUSG00000028952.13	ENSMUST00000123696.8	2709	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	14.4256287707711	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCAGTGTCTGTTCCTT	8669	False	NA	-3	True	AATAAA	-16	NA	152112128	152104232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106692_152107152_152107265_152110234_152111517_152111999
transcript_98343.nic	chr4	-	2328	10	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	-34	-1	intron_retention	FALSE	canonical	3	24	junction_9	11.8049999869275	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTCAGTGTCTGTTCCT	8635	False	NA	-4	True	AATAAA	-15	NA	152112162	152104233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
transcript_98356.known	chr4	-	2863	6	FSM	ENSMUSG00000028950.4	ENSMUST00000030792.2	2863	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.49857113690718	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGCTTCTTGGCTG	9381	False	NA	0	True	AATAAA	-14	NA	152123025	152112370	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152113455_152115240_152115362_152115777_152115991_152116369_152117132_152119066_152119374_152122649
transcript_98360.known	chr4	+	3722	12	FSM	ENSMUSG00000028948.17	ENSMUST00000084116.13	3722	12	0	0	0	0	multi-exon	FALSE	canonical	3	617	junction_5	39.8725241465621	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAATAATAACAAAGA	7345	False	NA	NA	False	NA	NA	NA	152123783	152144481	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152142797
transcript_98361.known	chr4	+	2271	12	FSM	ENSMUSG00000028948.17	ENSMUST00000103197.5	2271	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_11	194.972004771526	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGTTCCTAGCCGTCTCT	7354	False	NA	NA	False	AATAAA	-17	NA	152123792	152145951	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152145709
transcript_98365.known	chr4	+	3616	11	FSM	ENSMUSG00000028948.17	ENSMUST00000131696.3	3616	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	202.328841246126	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTGAATACAGCTCTTC	7381	False	NA	NA	False	NA	NA	NA	152123819	152144499	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152142797
transcript_98367.known	chr4	+	2064	10	FSM	ENSMUSG00000028948.17	ENSMUST00000105663.8	2064	10	0	0	0	0	multi-exon	FALSE	canonical	3	617	junction_5	37.803912528588	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTTTGAATGGTACTT	7354	False	NA	NA	False	NA	NA	NA	152123792	152140851	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504
transcript_9837.known	chr10	-	361	2	FSM	ENSMUSG00000047146.18	ENSMUST00000228901.2	361	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAGCAATTAATTAAAAGA	2803	False	NA	-19	True	NA	NA	NA	62723291	62715651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62715913_62723191
transcript_98372.nic	chr4	+	1625	8	ISM	ENSMUSG00000028948.17	ENSMUST00000105663.8	2064	10	-32	4348	-17	-183	5prime_fragment	FALSE	canonical	3	617	junction_5	29.2999965173781	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAAGAACAGGTAAGTAC	7322	False	NA	NA	False	AGTAAA	-3	NA	152123760	152136503	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214
transcript_98374.known	chr4	+	2419	6	FSM	ENSMUSG00000028948.17	ENSMUST00000147797.8	2419	6	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_2	28.4857859291261	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGAATACTCCTGTTA	7339	False	NA	NA	False	NA	NA	NA	152123777	152136686	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152124265_152125503_152125724_152125973_152126102_152130151_152131102_152134991_152135154_152136214
transcript_98382.known	chr4	+	3818	22	FSM	ENSMUSG00000039713.18	ENSMUST00000118648.8	3818	22	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	15.0256017344728	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAAAGAGTCATGCGCT	NA	False	NA	28	True	TATAAA	-17	NA	152171314	152199847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
transcript_98392.nic	chr4	+	4140	21	ISM	ENSMUSG00000039713.18	ENSMUST00000118648.8	3818	22	-51	-10	-51	0	intron_retention	FALSE	canonical	3	104	junction_1	15.0860863049367	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCGCTTCTGGAACGC	NA	False	NA	38	True	TATAAA	-27	NA	152171263	152199857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254
transcript_9840.known	chr10	+	1038	9	FSM	ENSMUSG00000071253.9	ENSMUST00000144459.2	1038	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	28.2389358864671	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACGTATGAGCTGATGAA	NA	False	NA	NA	False	NA	NA	NA	62756458	62780208	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62756661_62764074_62764168_62766081_62766216_62768497_62768571_62773196_62773319_62773706_62773774_62776820_62776984_62778429_62778499_62780093
transcript_98400.nic	chr4	+	4325	21	NIC	ENSMUSG00000039713.18	novel	3818	22	NA	NA	-51	0	intron_retention	FALSE	canonical	3	104	junction_1	14.6574213284602	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAAAGAGTCATGCGCT	NA	False	NA	28	True	TATAAA	-17	NA	152171263	152199847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
transcript_98408.known	chr4	+	3842	21	FSM	ENSMUSG00000039713.18	ENSMUST00000105661.10	3842	21	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	32.8296740769688	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAAAGAGTCATGCGCT	2927	False	NA	28	True	TATAAA	-17	NA	152181175	152199847	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152181365_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
transcript_98418.known	chr4	+	4113	20	FSM	ENSMUSG00000039713.18	ENSMUST00000084115.4	4113	20	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	33.4074982874841	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCGCTTCTGGAACGC	2927	False	NA	38	True	TATAAA	-27	NA	152181175	152199857	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152181365_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254
transcript_9843.nnic	chr10	+	3084	8	NIC	ENSMUSG00000071253.9	novel	3145	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	28.5328310719352	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGATGGCTTGGTTTTTT	NA	False	NA	18	True	ATTAAA	-19	NA	62756408	62782277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_62756661_62764074_62764168_62766081_62766216_62773196_62773319_62773706_62773774_62776820_62776984_62778429_62778499_62780093
transcript_98435.known	chr4	+	1603	7	FSM	ENSMUSG00000024793.15	ENSMUST00000035275.8	1603	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.13138237134266	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGGTATTTCAGTGG	782	False	NA	NA	False	ATTAAA	-17	NA	152200799	152204568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152201181_152201387_152201523_152201834_152202000_152202857_152202957_152203146_152203185_152203616_152203801_152203967
transcript_98436.known	chr4	-	3406	16	FSM	ENSMUSG00000028943.19	ENSMUST00000030785.15	3406	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	5.0570083382701	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGCTCTCATTCACTC	NA	False	NA	NA	False	ATTAAA	-14	NA	152236664	152204787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152205723_152208073_152208086_152208170_152208251_152212525_152212790_152212864_152213011_152214068_152214096_152215225_152215419_152215508_152215752_152217380_152217414_152218617_152218899_152219929_152220132_152222886_152223019_152223192_152223376_152223495_152223683_152233315_152233510_152236370
transcript_98437.nic	chr4	-	3037	14	NIC	ENSMUSG00000028943.19	novel	3406	16	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	5.16588719704025	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGCTCATTTGCATGC	NA	False	NA	NA	False	NA	NA	NA	152236881	152205313	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_152205723_152208073_152208086_152208170_152208251_152212525_152212790_152212864_152213011_152215225_152215419_152215508_152215752_152218617_152218899_152219929_152220132_152222886_152223019_152223192_152223376_152223495_152223683_152233315_152233510_152236370
transcript_98446.known	chr4	-	1411	8	FSM	ENSMUSG00000028943.19	ENSMUST00000105653.8	1411	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.13454587245254	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAGAAAGATGCTG	NA	False	NA	NA	False	NA	NA	NA	152216322	152205326	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152205723_152208073_152208086_152208170_152208251_152212525_152212790_152212864_152213011_152215225_152215419_152215508_152215752_152216245
transcript_98447.known	chr4	-	1190	5	FSM	ENSMUSG00000028943.19	ENSMUST00000137937.8	1190	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	4.60977222864644	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAGGTTGAGATTCTGCA	NA	False	NA	-2	True	NA	NA	NA	152216314	152212250	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152212790_152212864_152213011_152215225_152215419_152215508_152215752_152216245
transcript_98451.known	chr4	+	1457	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	55.2466062306093	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCTAGGTGGTCATTT	NA	False	NA	17	True	AATAAA	-22	NA	152262590	152356309	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
transcript_98453.known	chr4	+	1425	9	FSM	ENSMUSG00000028937.15	ENSMUST00000030779.10	1425	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	152.008172066504	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAAGCCTAGGTGGT	NA	False	NA	12	True	AATAAA	-17	NA	152270662	152356304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152270843_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
transcript_98456.nnic	chr4	+	1267	8	NNC	ENSMUSG00000028937.15	novel	1457	9	NA	NA	81	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_3	161.236041952442	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAAGCCTAGGTGGT	NA	False	NA	12	True	AATAAA	-17	NA	152262671	152356304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_152262798_152291220_152291339_152302192_152302350_152314243_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
transcript_98460.known	chr4	-	2466	17	FSM	ENSMUSG00000058498.13	ENSMUST00000076183.12	2466	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	8.32071962032131	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAGTACAGTGATCACT	NA	False	NA	NA	False	AATAAA	-18	NA	152403065	152391475	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152392074_152393294_152393361_152395840_152395959_152396228_152396281_152396527_152396714_152396846_152397034_152397643_152397742_152397820_152397890_152398335_152398405_152398492_152398566_152399498_152399546_152399848_152399975_152400059_152400136_152400207_152400290_152400375_152400521_152402117_152402251_152402724
transcript_98466.known	chr4	+	4950	6	FSM	ENSMUSG00000039662.17	ENSMUST00000151372.8	4950	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	50.2274825170444	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGAGGAGTCCTGTATCA	4612	False	NA	2	True	AATAAA	-17	NA	152381760	152391577	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152382026_152383141_152383231_152383593_152383703_152384127_152384298_152384993_152385212_152387478
transcript_98469.known	chr4	+	4919	5	FSM	ENSMUSG00000039662.17	ENSMUST00000048892.14	4919	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	16.0370664399696	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGGAGTCCTGTATCAG	4535	False	NA	3	True	AATAAA	-18	NA	152381683	152391578	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152382026_152383141_152383231_152384127_152384298_152384993_152385212_152387478
transcript_98481.known	chr4	+	2048	4	FSM	ENSMUSG00000028936.16	ENSMUST00000188151.2	2048	4	0	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	1559	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCACTGTGCAAGGCTT	NA	False	NA	28	True	ATTAAA	-18	NA	152410325	152418527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
transcript_98488.known	chr4	-	1799	16	FSM	ENSMUSG00000028931.13	ENSMUST00000105648.10	1799	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_13	3.92371705854991	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAGGTACTTTGCTCAA	NA	False	NA	NA	False	NA	NA	NA	152533313	152477031	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152519238_152519281_152520261_152520395_152533134
transcript_98489.known	chr4	-	3961	16	FSM	ENSMUSG00000028931.13	ENSMUST00000160884.9	3961	16	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_13	3.63684845252956	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTCTGATCTCTCCTTTC	NA	False	NA	-4	True	AATAAA	-22	NA	152562367	152475200	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152519238_152519281_152520261_152520395_152561857
transcript_9849.known	chr10	+	3651	21	FSM	ENSMUSG00000036875.16	ENSMUST00000092462.12	3651	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	84.7772964890955	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGGGAGATCAGAGGACTA	NA	False	NA	NA	False	NA	NA	NA	62782853	62809546	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62782949_62784961_62785145_62786513_62786698_62789962_62790109_62791092_62791225_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805558_62805738_62807622_62807770_62809029
transcript_98493.known	chr4	-	3574	15	FSM	ENSMUSG00000028931.13	ENSMUST00000159840.8	3574	15	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_13	3.78773530958939	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGATCTCTCCTTTCCT	NA	False	NA	-2	True	AATAAA	-24	NA	152533297	152475198	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152520261_152520395_152533134
transcript_98494.known	chr4	-	3597	15	FSM	ENSMUSG00000028931.13	ENSMUST00000030768.10	3597	15	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_13	3.43748840443313	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTTCTGATCTCTCCTTT	NA	False	NA	-5	True	AATAAA	-21	NA	152562046	152475201	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152520261_152520395_152561857
transcript_98497.known	chr4	+	940	4	FSM	ENSMUSG00000047613.11	ENSMUST00000147826.2	940	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	332.870345129551	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGATGAATTCTGCTGGAA	NA	False	NA	NA	False	NA	NA	NA	154041722	154046260	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_154041780_154044212_154044320_154044987_154045450_154045946
transcript_98499.known	chr4	+	541	3	FSM	ENSMUSG00000047613.11	ENSMUST00000141493.8	541	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	388	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATCCTTCCATGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	154041722	154045968	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_154041780_154044987_154045450_154045946
transcript_98500.nic	chr4	+	1630	3	ISM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	-35	0	-35	0	intron_retention	FALSE	canonical	3	743	junction_1	52	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	False	NA	NA	False	AATAAA	-29	NA	154041658	154046382	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_154041780_154044205_154044320_154044987
transcript_98504.known	chr4	-	1634	8	FSM	ENSMUSG00000029027.10	ENSMUST00000133607.9	1634	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	14.5588180726826	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGATGGCTTTATCTGTGC	NA	False	NA	NA	False	TTTAAA	-35	NA	154059508	154049360	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057064_154057136_154057236_154057426_154059025_154059153_154059323
transcript_98506.known	chr4	-	2093	7	FSM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	5.79271573232759	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATGTCAAAATTTTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	154059583	154048905	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057236_154057426_154059025_154059153_154059323
transcript_98508.known	chr4	-	699	4	FSM	ENSMUSG00000029027.10	ENSMUST00000142671.2	699	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	10.9848380355227	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGAGGAGGAGGGAGAG	NA	False	NA	NA	False	NA	NA	NA	154059514	154056943	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154057136_154057236_154057426_154059025_154059153_154059323
transcript_98516.known	chr4	+	5151	22	FSM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_14	10.5677814386534	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCATGTCACTTTTATTA	NA	False	NA	13	True	AGTAAA	-10	NA	154059650	154093189	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078140_154078861_154078970_154079891_154079929_154080728_154080796_154081317_154081427_154086721_154086861_154086984_154087053_154090622_154090714_154091146
transcript_98523.nic	chr4	+	2616	15	ISM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	-82	14283	-82	4373	5prime_fragment	FALSE	canonical	3	70	junction_14	10.541463322499	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGATGAAGGCTCTGCA	NA	False	NA	NA	False	AAGAAA	-1	NA	154059568	154078906	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078140_154078861
transcript_98525.nic	chr4	+	2572	14	ISM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	-82	15049	-82	3607	5prime_fragment	FALSE	canonical	3	75	junction_10	9.9418427208637	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGGCCTTCATGGACT	NA	False	NA	NA	False	NA	NA	NA	154059568	154078140	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926
transcript_98529.nic	chr4	+	2661	12	ISM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	-9	18231	-9	425	5prime_fragment	FALSE	canonical	3	75	junction_10	10.7963875194935	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCATATAAGTACCAGGTA	NA	False	NA	NA	False	NA	NA	NA	154059641	154074958	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231
transcript_98532.nnic	chr4	+	2904	8	NNC	ENSMUSG00000029028.15	novel	3468	7	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	147.745644640389	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGCATCAGCAGCCTTA	NA	False	NA	16	True	AATAAA	-18	NA	154096218	154105970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_154096894_154100112_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087_154104343_154104875
transcript_98533.known	chr4	+	3468	7	FSM	ENSMUSG00000029028.15	ENSMUST00000169622.8	3468	7	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_6	37.5972812255827	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGCATCAGCAGCCTTA	NA	False	NA	16	True	AATAAA	-18	NA	154096187	154105970	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_154096894_154100112_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087
transcript_98534.known	chr4	+	3395	7	FSM	ENSMUSG00000029028.15	ENSMUST00000030894.15	3395	7	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_6	37.5972812255827	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTGCATCAGCAGCCTT	NA	False	NA	15	True	AATAAA	-17	NA	154096259	154105969	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_154096894_154100112_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087
transcript_98538.known	chr4	-	707	4	FSM	ENSMUSG00000078350.12	ENSMUST00000146054.8	707	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	2.35702260395516	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGGGGATTCCCTCCC	NA	False	NA	-23	True	AATAAA	-16	NA	154110607	154107767	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154107911_154108144_154108349_154109960_154110079_154110365
transcript_98541.known	chr4	-	2568	4	FSM	ENSMUSG00000078350.12	ENSMUST00000125533.9	2568	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	12.1928941054479	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTTTCAAAAATCTCAATG	NA	False	NA	NA	False	NA	NA	NA	154110687	154105912	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154107911_154108144_154108275_154109960_154110079_154110365
transcript_98542.known	chr4	-	477	4	FSM	ENSMUSG00000078350.12	ENSMUST00000130175.8	477	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	16.8588914885357	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGGGATTCCCTCCCA	NA	False	NA	-22	True	AATAAA	-17	NA	154110324	154107766	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154107911_154108144_154108349_154109960_154110079_154110313
transcript_98545.nnic	chr4	-	2683	12	NNC	ENSMUSG00000029026.18	novel	4752	12	NA	NA	3212	229	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_10	4.45918126124753	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGGGGTCAGCTTG	NA	False	NA	-3	True	GATAAA	-14	NA	154166567	154142739	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_154143784_154145044_154145139_154145818_154145958_154146409_154146559_154146968_154147097_154148341_154148431_154148769_154148913_154149094_154149205_154151466_154151583_154152033_154152221_154165785_154166029_154166326
transcript_98546.known	chr4	-	4752	12	FSM	ENSMUSG00000029026.18	ENSMUST00000133533.8	4752	12	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_11	6.38697020736374	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTGACTATTGTAACTAA	NA	False	NA	NA	False	AATAAA	-16	NA	154181630	154140709	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154143784_154145044_154145139_154145818_154145958_154146409_154146559_154146968_154147097_154148341_154148431_154148769_154148913_154149094_154149205_154151466_154151583_154152033_154152221_154165785_154166029_154181350
transcript_98550.known	chr4	+	1598	12	FSM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	6.78354840224641	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACAGTGGTGGTTGTTT	NA	False	NA	25	True	TATAAA	-30	NA	154226828	154241273	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557_154240750_154240988
transcript_98562.known	chr4	-	1724	4	FSM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_1	33.0891052899423	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTGCTCCTTTTTGAA	NA	False	NA	-3	True	AGTAAA	-16	NA	154245123	154241941	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154243023_154243725_154243880_154244541_154244719_154244811
transcript_98568.known	chr4	-	915	3	FSM	ENSMUSG00000029030.15	ENSMUST00000134492.2	915	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	369	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTCCACCCACTTGTGC	NA	False	NA	NA	False	NA	NA	NA	154245123	154242596	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154243023_154244541_154244719_154244811
transcript_98570.known	chr4	-	947	2	FSM	ENSMUSG00000029030.15	ENSMUST00000133165.2	947	2	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTTGTTACGCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	154245063	154244023	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154244719_154244811
transcript_98573.nic	chr4	-	3167	16	NIC	ENSMUSG00000029032.13	novel	2860	15	NA	NA	-196	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_15	8.43958924750883	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACAGGTAGGTGGAGAC	NA	False	NA	34	True	AATATA	-4	NA	154384707	154362942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392_154376011_154377288_154377400_154384281
transcript_98575.known	chr4	-	2860	15	FSM	ENSMUSG00000029032.13	ENSMUST00000030898.12	2860	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_12	5.46976849116476	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACAGGTAGGTGGAGAC	NA	False	NA	34	True	AATATA	-4	NA	154384511	154362942	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392_154376011_154384281
transcript_98599.known	chr4	+	387	2	FSM	ENSMUSG00000084987.2	ENSMUST00000144347.2	387	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAAGATTTATCCCCTGG	2926	False	NA	NA	False	NA	NA	NA	154685653	154688659	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_154685865_154688483
transcript_98607.known	chr4	-	883	7	FSM	ENSMUSG00000029059.10	ENSMUST00000030935.10	883	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	8.17856276425687	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCGTCCTTCCCACAGCA	NA	False	NA	-6	True	ATTAAA	-45	NA	154983567	154980855	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_154981055_154981496_154981616_154981805_154981882_154981962_154982027_154982584_154982637_154982932_154983138_154983399
transcript_98609.known	chr4	+	3200	7	FSM	ENSMUSG00000046637.4	ENSMUST00000050220.4	3200	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.06718737290547	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCCTGTAGGATTTTGT	3464	False	NA	NA	False	NA	NA	NA	154940656	154951584	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_154940901_154942417_154942644_154943766_154943972_154945017_154945185_154945618_154945890_154946550_154946766_154949712
transcript_98610.known	chr4	+	1273	3	FSM	ENSMUSG00000048001.8	ENSMUST00000049621.7	1273	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCTGTGCCTCTCGTCTG	NA	False	NA	3	True	AATAAA	-15	NA	155045379	155046828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155045507_155045592_155045759_155045848
transcript_98612.known	chr4	+	2508	19	FSM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_8	27.1993100856585	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATAATCTTTTATATAT	NA	False	NA	NA	False	NA	NA	NA	155048579	155065328	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
transcript_98616.known	chr4	+	1688	6	FSM	ENSMUSG00000029047.14	ENSMUST00000103180.4	1688	6	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_5	7.62627038597505	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGAGCCGGGCGTGGTGGC	NA	False	NA	NA	False	TTTAAA	-9	NA	155151472	155156890	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155151632_155152279_155152361_155153119_155153527_155154843_155155020_155155097_155155234_155156161
transcript_9862.nic	chr10	+	3655	19	ISM	ENSMUSG00000036875.16	ENSMUST00000131422.8	4122	21	-48	3660	-48	-3242	5prime_fragment	FALSE	canonical	3	200	junction_8	29.0182998880889	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTGGGATTGCAGATGT	NA	False	NA	NA	False	NA	NA	NA	62782756	62806304	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr10_+_62782949_62784961_62785145_62786513_62786698_62789962_62790109_62791092_62791225_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805554
transcript_98629.known	chr4	-	1803	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170828	155158566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
transcript_98644.known	chr4	-	1596	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	0	0	0	0	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170830	155158566	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
transcript_98657.known	chr4	+	1659	14	FSM	ENSMUSG00000029049.15	ENSMUST00000030915.11	1659	14	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_9	6.41927570616156	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGCACCTTTTGTGGG	NA	False	NA	17	True	AATAAA	-18	NA	155171033	155229962	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155171139_155171877_155171950_155173942_155174042_155175339_155175451_155176725_155176817_155177518_155177607_155185722_155185820_155186546_155186658_155195384_155195509_155195873_155196047_155213135_155213258_155213339_155213423_155226858_155226903_155229623
transcript_9866.known	chr10	+	3430	15	FSM	ENSMUSG00000036875.16	ENSMUST00000129785.2	3430	15	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_8	31.8382391062658	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAAGTTTTTATTTTAAG	NA	False	NA	NA	False	NA	NA	NA	62782888	62801914	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62782949_62784961_62785145_62786513_62786698_62789962_62790109_62791092_62791225_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678
transcript_98664.known	chr4	+	1076	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	46.5784881201135	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTCCTTCATAGCAA	NA	False	NA	8	True	NA	NA	NA	155334422	155341144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
transcript_98665.known	chr4	+	710	4	FSM	ENSMUSG00000073684.14	ENSMUST00000105627.8	710	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	91.7617688485909	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTCAGCCTGACAGGAT	NA	False	NA	NA	False	NA	NA	NA	155334445	155340840	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155334520_155335001_155335108_155335212_155335494_155340591
transcript_98666.known	chr4	+	1479	3	FSM	ENSMUSG00000073684.14	ENSMUST00000097747.9	1479	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_2	4.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGTTTCCTTCATAG	NA	False	NA	5	True	NA	NA	NA	155334459	155341141	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155335108_155335212_155335494_155340591
transcript_98671.known	chr4	-	2641	18	FSM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_14	28.8196876191202	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCATCAGTAAACCAAAT	NA	False	NA	NA	False	AAAACA	-10	NA	155445818	155346177	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155440883_155440974_155441937_155442060_155445608
transcript_98673.nnic	chr4	-	2263	17	NIC	ENSMUSG00000029053.17	novel	2641	18	NA	NA	-91	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_15	50.979009160634	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGGAATAAAGTGTACCG	NA	False	NA	-36	True	NA	NA	NA	155445909	155346556	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155441937_155442060_155445608
transcript_98683.known	chr4	-	4083	15	FSM	ENSMUSG00000029053.17	ENSMUST00000103178.11	4083	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_14	50.8262847795291	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAATGCCCTTCCTGTT	NA	False	NA	-11	True	ATTAAA	-8	NA	155430229	155344585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155429906
transcript_98691.nic	chr4	-	598	4	ISM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	-91	92899	-91	1514	5prime_fragment	FALSE	canonical	3	200	junction_1	19.2584757675391	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATGTATATGAGTGTTT	NA	False	NA	-8	True	ATTAAA	-18	NA	155445909	155439076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_155439162_155440883_155440974_155441937_155442060_155445608
transcript_98692.known	chr4	+	2365	5	FSM	ENSMUSG00000078490.11	ENSMUST00000123952.9	2365	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATTCTGGTCTGTTGCGT	2332	False	NA	NA	False	NA	NA	NA	155493714	155506449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155494028_155500136_155500223_155503076_155503153_155503303_155503448_155504703
transcript_98704.known	chr4	+	3131	12	FSM	ENSMUSG00000029064.16	ENSMUST00000030940.14	3131	12	0	0	0	0	multi-exon	FALSE	canonical	3	1763	junction_1	785.626496329864	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575826	155643726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
transcript_98714.known	chr4	+	3088	11	FSM	ENSMUSG00000029064.16	ENSMUST00000105616.10	3088	11	0	0	0	0	multi-exon	FALSE	canonical	3	1867	junction_1	609.593339858631	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575820	155643726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155576038_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
transcript_9872.known	chr10	+	603	2	FSM	ENSMUSG00000036875.16	ENSMUST00000131715.2	603	2	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAGAGTTTGATACCT	NA	False	NA	NA	False	NA	NA	NA	62782858	62785474	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62782949_62784961
transcript_98737.known	chr4	+	3152	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGTAACAGCTTTCTTC	9572	False	NA	38	True	AATAAA	-24	NA	155648156	155675458	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
transcript_98747.nic	chr4	+	2903	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_9	206.213699835874	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9659	False	NA	34	True	AATAAA	-20	NA	155648243	155675454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155673066_155673150_155673784
transcript_98752.nnic	chr4	+	2836	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	208.120662116956	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9679	False	NA	34	True	AATAAA	-20	NA	155648263	155675454	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_155648437_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
transcript_98756.known	chr4	+	2595	20	FSM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	0	0	0	0	multi-exon	TRUE	canonical	3	247	junction_2	74.7943440763884	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3962	False	NA	23	True	ATTAAA	-28	NA	155709325	155734395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
transcript_98757.known	chr4	+	2673	20	FSM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	84.1228490935262	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	4003	False	NA	23	True	ATTAAA	-28	NA	155709366	155734395	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
transcript_98764.known	chr4	+	6291	9	FSM	ENSMUSG00000042202.16	ENSMUST00000105608.9	6291	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	5.21865643628703	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCAGTAGCCTCCTCAT	NA	False	NA	14	True	AATAAA	-19	NA	155685872	155707797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155686196_155694295_155694777_155694957_155695094_155696072_155696201_155697073_155697195_155700025_155700080_155700639_155700713_155702071_155702218_155702968
transcript_98766.known	chr4	+	2166	9	FSM	ENSMUSG00000042202.16	ENSMUST00000118607.2	2166	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_6	4.43705983732471	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGATGGTCTGGAGTGC	NA	False	NA	NA	False	NA	NA	NA	155686400	155703776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155686620_155694295_155694777_155694957_155695094_155696072_155696201_155697073_155697195_155700025_155700080_155700639_155700713_155702071_155702218_155702968
transcript_98769.nic	chr4	+	1076	9	ISM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	-63	10085	-48	30	5prime_fragment	FALSE	canonical	3	247	junction_2	65.3567135036639	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATCAGAGGAAGAAGAGGA	3899	False	NA	15	True	NA	NA	NA	155709262	155724310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233
transcript_9877.known	chr10	+	2816	13	FSM	ENSMUSG00000020070.19	ENSMUST00000131718.8	2816	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	21.320959953373	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGCACAAAAC	NA	False	NA	NA	False	AATAAA	-45	NA	62816017	62840245	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62816112_62818449_62818624_62824901_62825020_62826758_62826861_62828895_62829020_62829758_62829821_62830483_62830550_62831088_62831159_62833659_62833762_62833857_62833975_62836011_62836180_62837961_62838060_62838724
transcript_98770.nic	chr4	+	1195	9	ISM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	-104	10085	-48	30	5prime_fragment	FALSE	canonical	3	183	junction_2	82.2648162946955	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATCAGAGGAAGAAGAGGA	3899	False	NA	15	True	NA	NA	NA	155709262	155724310	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233
transcript_98783.nic	chr4	+	666	6	ISM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	-63	15827	-48	3771	5prime_fragment	FALSE	canonical	3	247	junction_2	78.77715404862	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAGGGAGCGGGAGCGC	3899	False	NA	NA	False	NA	NA	NA	155709262	155718568	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545
transcript_98786.known	chr4	+	805	7	FSM	ENSMUSG00000029062.15	ENSMUST00000135550.8	805	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	181.212045834585	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCCTTAGCGACCTTTAA	3947	False	NA	NA	False	NA	NA	NA	155709310	155714797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155709399_155709641_155709797_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650
transcript_98792.nic	chr4	+	448	5	NIC	ENSMUSG00000029062.15	novel	805	7	NA	NA	3	-1569	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	155.759429891098	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACGAGAAAAGAAAAGAGAA	3950	False	NA	7	True	AAGAAA	-18	NA	155709313	155713228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_155709399_155709987_155710112_155710183_155710231_155711230_155711347_155713152
transcript_98793.nic	chr4	+	483	5	ISM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	-12	19715	3	-117	5prime_fragment	FALSE	canonical	3	247	junction_2	88.0379889593123	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGCACGAACGCCGGAAA	3950	False	NA	NA	False	AAGAAA	-1	NA	155709313	155714680	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650
transcript_98794.nic	chr4	+	594	5	ISM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	-6	19598	-6	0	5prime_fragment	FALSE	canonical	3	247	junction_2	88.0379889593123	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCCTTAGCGACCTTTAA	3956	False	NA	NA	False	NA	NA	NA	155709319	155714797	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650
transcript_98799.nic	chr4	+	452	4	ISM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	-63	21167	-48	-1569	5prime_fragment	FALSE	canonical	3	247	junction_2	91.0726205959959	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACGAGAAAAGAAAAGAGAA	3899	False	NA	7	True	AAGAAA	-18	NA	155709262	155713228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152
transcript_9880.nnic	chr10	-	1571	10	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_9	143.298789980504	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5741	False	NA	-6	True	AATAAA	-15	NA	62859713	62851206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859416
transcript_98800.nic	chr4	+	514	4	ISM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	-47	21167	-6	-1569	5prime_fragment	FALSE	canonical	3	183	junction_2	116.919725548011	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACGAGAAAAGAAAAGAGAA	3956	False	NA	7	True	AAGAAA	-18	NA	155709319	155713228	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152
transcript_98801.known	chr4	+	383	3	FSM	ENSMUSG00000029062.15	ENSMUST00000149498.2	383	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	9	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTCTTTGCCCTCATT	3973	False	NA	NA	False	NA	NA	NA	155709336	155710153	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155709399_155709641_155709797_155709987
transcript_9881.known	chr10	-	2213	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGTCCTAGAATAT	5781	False	NA	-15	True	AATAAA	-15	NA	62859673	62850442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
transcript_98813.nnic	chr4	-	3709	21	NNC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_20	81.1806011310584	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7364	False	NA	-6	True	TATAAA	-12	NA	155753711	155739139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743447_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030_155753188_155753271
transcript_98831.nnic	chr4	-	3819	20	NNC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	-82	0	intron_retention	FALSE	canonical	3	119	junction_13	62.6646971262766	112	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7338	False	NA	-6	True	TATAAA	-12	NA	155753737	155739139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743447_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
transcript_98837.nic	chr4	-	3831	20	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	-82	0	intron_retention	FALSE	canonical	3	72	junction_13	70.1036035839604	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7338	False	NA	-6	True	TATAAA	-12	NA	155753737	155739139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743459_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
transcript_9884.known	chr10	-	2168	10	FSM	ENSMUSG00000020069.17	ENSMUST00000118898.8	2168	10	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_6	104.074166337115	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGTCCTAGAATAT	5781	False	NA	-15	True	AATAAA	-15	NA	62859673	62850442	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859498
transcript_98842.nic	chr4	-	3613	20	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_19	79.1919019895357	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7364	False	NA	-6	True	TATAAA	-12	NA	155753711	155739139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030_155753188_155753271
transcript_9885.known	chr10	-	1633	9	FSM	ENSMUSG00000020069.17	ENSMUST00000140743.8	1633	9	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_7	118.49762655851	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5458	False	NA	-6	True	AATAAA	-15	NA	62859996	62851206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62855171_62855307_62859498
transcript_98866.known	chr4	-	3642	19	FSM	ENSMUSG00000029060.18	ENSMUST00000103176.10	3642	19	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_12	57.2103817307469	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	7420	False	NA	-5	True	TATAAA	-13	NA	155753655	155739138	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
transcript_9889.nnic	chr10	-	1144	8	NIC	ENSMUSG00000020069.17	novel	1633	9	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_4	179.751302115575	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5786	False	NA	-6	True	AATAAA	-15	NA	62859668	62851206	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853302_62853390_62853864_62854005_62855171_62855307_62859498
transcript_98891.nic	chr4	-	3798	18	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	-82	0	intron_retention	FALSE	canonical	3	118	junction_11	58.8548740018329	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	7338	False	NA	-6	True	TATAAA	-12	NA	155753737	155739139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
transcript_98924.known	chr4	-	1558	6	FSM	ENSMUSG00000029060.18	ENSMUST00000139788.8	1558	6	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_5	33.7069725724515	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGCTTCCTGTTCCTTG	NA	False	NA	-6	True	TATAAA	-12	NA	155741184	155739139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740763_155740850_155740978_155741102
transcript_98925.known	chr4	+	2140	1	FSM	ENSMUSG00000074738.3	ENSMUST00000099265.3	2140	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCACTGTCTTGTGTGT	NA	False	NA	8	True	NA	NA	NA	155778798	155780938	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155778800_155780900
transcript_98928.known	chr4	+	1472	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	0	0	0	0	multi-exon	FALSE	canonical	3	1510	junction_4	100.903419169025	1062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGAATTGCCACAAAAT	NA	False	NA	117	True	AATAAA	-33	NA	155789256	155818336	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
transcript_98930.known	chr4	+	874	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACCAAATGCTTTGGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	155789591	155816646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
transcript_98936.known	chr4	+	1555	2	FSM	ENSMUSG00000029038.10	ENSMUST00000140322.2	1555	2	0	0	0	0	multi-exon	FALSE	canonical	3	1675	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTGTGGGGAAAGACAG	NA	False	NA	NA	False	AGTAAA	-22	NA	155789580	155801135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155789919_155799918
transcript_98941.known	chr4	-	2413	16	FSM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_5	53.203759265676	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGCTTGATGGCTGAGG	NA	False	NA	-9	True	AATAAA	-19	NA	155845550	155825097	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
transcript_9897.known	chr10	-	682	3	FSM	ENSMUSG00000020069.17	ENSMUST00000119814.3	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	86.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATGAGACTTGGTTTT	5828	False	NA	NA	False	AATAAA	-34	NA	62859626	62853585	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62854005_62855171_62855307_62859498
transcript_98979.nic	chr4	-	564	4	ISM	ENSMUSG00000029036.19	ENSMUST00000176043.2	854	7	-58	2063	-33	150	5prime_fragment	FALSE	canonical	3	778	junction_2	18.1536650722535	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCAAGGCACACCTCTG	NA	False	NA	NA	False	NA	NA	NA	155845583	155840135	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_-_155840196_155840517_155840620_155841548_155841626_155845258
transcript_9898.known	chr10	+	847	3	FSM	ENSMUSG00000020072.16	ENSMUST00000130531.2	847	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGACAGGATTTCTCTG	4329	False	NA	NA	False	AAGAAA	-40	NA	62889988	62893907	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62890285_62892557_62892621_62893419
transcript_98980.known	chr4	-	697	3	FSM	ENSMUSG00000029036.19	ENSMUST00000134317.2	697	3	0	0	0	0	multi-exon	FALSE	canonical	3	778	junction_1	0.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCCAGGGTAGGTCCAG	NA	False	NA	NA	False	NA	NA	NA	155845544	155840285	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155840620_155841548_155841626_155845258
transcript_98981.known	chr4	-	3623	4	FSM	ENSMUSG00000042116.4	ENSMUST00000042196.4	3623	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	155859155	155852605	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155855123_155855201_155855481_155857165_155857724_155858886
transcript_98982.nic	chr4	+	1186	5	NIC	ENSMUSG00000029066.13	novel	764	4	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	558.135064298956	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	22	True	AATAAA	-18	NA	155887278	155893288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_155887553_155887829_155888200_155888289_155888401_155891364_155891443_155892935
transcript_98985.known	chr4	+	494	3	FSM	ENSMUSG00000029066.13	ENSMUST00000185148.8	494	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	616.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTGTATAAATAAAGCCT	NA	False	NA	-11	True	NA	NA	NA	155888103	155893255	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155888200_155891364_155891443_155892935
transcript_98986.known	chr4	+	764	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	22	True	AATAAA	-18	NA	155887977	155893288	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
transcript_98987.known	chr4	+	579	3	FSM	ENSMUSG00000029066.13	ENSMUST00000143503.2	579	3	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_2	81	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAGATTGTATAAATAAA	NA	False	NA	-15	True	NA	NA	NA	155888215	155893251	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155888401_155891364_155891443_155892935
transcript_98988.known	chr4	+	442	4	FSM	ENSMUSG00000029066.13	ENSMUST00000130188.2	442	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	645.346418600119	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTACAGAGGTTATT	NA	False	NA	NA	False	NA	NA	NA	155888108	155891934	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155891772
transcript_98999.nnic	chr4	+	2288	12	NNC	ENSMUSG00000029068.17	novel	4220	11	NA	NA	-18	54	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_6	303.907880779686	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGGCTGTCATTC	4607	False	NA	22	True	AATAAA	-27	NA	155896927	155908814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155903010_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_99.known	SIRV3	+	2467	5	FSM	SIRV3A	SIRV301	2467	5	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_3	576.603416569829	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1944	8939	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_SIRV3_+_2006_4568_4780_6057_7989_8127_8208_8755
transcript_99002.nic	chr4	+	2400	12	NIC	ENSMUSG00000029068.17	novel	4220	11	NA	NA	-18	54	combination_of_known_junctions	FALSE	canonical	3	30	junction_6	308.62847760711	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGGCTGTCATTC	4607	False	NA	22	True	AATAAA	-27	NA	155896927	155908814	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155903122_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_9901.known	chr10	+	2404	9	FSM	ENSMUSG00000112129.2	ENSMUST00000178684.3	2404	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.76334199745824	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGGCTACTCTCCAGCC	1594	False	NA	NA	False	NA	NA	NA	62897360	62913741	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_62897481_62901562_62901663_62902303_62902403_62903207_62903318_62903436_62903467_62907185_62907275_62907647_62907827_62910839_62910903_62912127
transcript_99013.known	chr4	+	4220	11	FSM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_8	224.905068862398	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCTCTGTGCCATCCT	4637	False	NA	NA	False	ATTAAA	-15	NA	155896957	155909000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_99017.known	chr4	+	2442	11	FSM	ENSMUSG00000029068.17	ENSMUST00000030944.11	2442	11	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_8	247.410205933385	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCTCTGTGCCATCCT	4625	False	NA	NA	False	ATTAAA	-15	NA	155896945	155909000	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_99037.nic	chr4	+	1011	6	ISM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	-8	5682	4	3003	5prime_fragment	FALSE	canonical	3	604	junction_5	178.167786089405	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGTATAGAAAGATATAAAA	4629	False	NA	35	True	AATAAA	-35	NA	155896949	155903318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995
transcript_9904.known	chr10	-	1833	4	FSM	ENSMUSG00000020067.9	ENSMUST00000218978.2	1833	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	3.29983164553722	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAACAAAAAACAAAACG	NA	False	NA	NA	False	TTTAAA	-2	NA	62958463	62952055	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_62952806_62954199_62954334_62955807_62955974_62957680
transcript_99042.known	chr4	+	833	4	FSM	ENSMUSG00000029068.17	ENSMUST00000136370.2	833	4	0	0	0	0	multi-exon	FALSE	canonical	3	885	junction_3	91.4123745573991	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATAGATTAAAAACAGAGC	4914	False	NA	NA	False	NA	NA	NA	155897234	155900315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699
transcript_99047.known	chr4	+	1159	4	FSM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	303.738191357111	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGAACCCAGGGCCCAAG	NA	False	NA	96	True	AAAAAG	-9	NA	155915807	155917587	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155916193_155916439_155916528_155916808_155917255_155917347
transcript_99051.known	chr4	+	773	4	FSM	ENSMUSG00000065990.13	ENSMUST00000105591.2	773	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	1010.64072086309	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCACTATAATAAATATTGG	NA	False	NA	-3	True	NA	NA	NA	155916125	155917488	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155916224_155916439_155916528_155916808_155917255_155917347
transcript_99052.nnic	chr4	+	956	4	NIC	ENSMUSG00000065990.13	novel	773	4	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	1112.8534894086	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155916062	155917518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_155916224_155916349_155916528_155916808_155917255_155917347
transcript_99054.nic	chr4	+	908	4	NIC	ENSMUSG00000065990.13	novel	1029	3	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	1100.13494121807	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155916079	155917518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_155916193_155916349_155916528_155916808_155917255_155917347
transcript_99060.known	chr4	+	1029	3	FSM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	0	0	0	0	multi-exon	FALSE	canonical	3	2371	junction_1	52	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155916115	155917518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155916528_155916808_155917255_155917347
transcript_99061.known	chr4	+	2203	10	FSM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	12.5648932828686	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155924182	155928545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155924348_155925234_155925256_155925362_155925666_155925901_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
transcript_99064.nic	chr4	+	1773	7	ISM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	1660	0	-918	0	3prime_fragment	FALSE	canonical	3	23	junction_2	4.10960933531265	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155925842	155928545	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
transcript_99070.known	chr4	-	2662	3	FSM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	2.5	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGATCCATGTGTACAT	NA	False	NA	NA	False	AGTAAA	-27	NA	155953897	155949179	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155951343_155951569_155951795_155953623
transcript_99071.nic	chr4	-	2363	2	NIC	ENSMUSG00000029073.10	novel	2662	3	NA	NA	-32	15	intron_retention	FALSE	canonical	3	81	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGGGTATAGCATTCTGG	NA	False	NA	-28	True	AATAAA	-13	NA	155953929	155949737	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_155951795_155953623
transcript_99075.known	chr4	+	2368	17	FSM	ENSMUSG00000029034.10	ENSMUST00000030901.9	2368	17	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	75.0722308430354	1741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCACTGTGTACCGTCA	9960	False	NA	21	True	AATAAA	-21	NA	155954002	155973560	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
transcript_99085.nnic	chr4	+	1913	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-40	134	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	247.894457828775	280	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTTTTATTCCTACTC	9920	False	NA	30	True	AATAAA	-18	NA	155953962	155973324	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971941_155972369_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
transcript_9910.known	chr10	+	3914	26	FSM	ENSMUSG00000020064.10	ENSMUST00000219577.2	3914	26	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_16	90.360929610092	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTAGTTTCTATGGTTG	NA	False	NA	17	True	AATAAA	-31	NA	63079701	63153657	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63139623_63139648_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
transcript_99154.known	chr4	-	1243	8	FSM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_3	43.9103911276089	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	9080	False	NA	NA	False	AATAAA	-14	NA	155976238	155973318	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
transcript_9916.known	chr10	+	3898	25	FSM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_7	41.1321548993809	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACCAGTAGTTTCTATG	NA	False	NA	13	True	AATAAA	-27	NA	63079689	63153653	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
transcript_99196.known	chr4	-	598	3	FSM	ENSMUSG00000051557.16	ENSMUST00000129637.8	598	3	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_2	4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTGTAAGAAGGTGAGCCA	9652	False	NA	NA	False	NA	NA	NA	155975666	155974836	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_155975127_155975209_155975360_155975508
transcript_99200.known	chr4	+	4365	24	FSM	ENSMUSG00000029033.17	ENSMUST00000105584.10	4365	24	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_10	11.8275254879557	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCTGCCTGCTCATTGCC	NA	False	NA	10	True	AATAAA	-15	NA	155976278	155991707	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155976899_155980567_155980626_155981023_155981144_155981340_155981395_155983327_155983387_155983873_155984058_155984415_155984461_155984545_155984642_155984743_155984819_155985460_155985473_155986131_155986245_155986332_155986385_155986588_155986690_155986761_155986874_155987114_155987324_155987416_155987487_155987595_155987691_155987767_155987971_155988207_155988316_155989284_155989384_155989469_155989691_155989866_155989977_155990064_155990176_155990269
transcript_99206.known	chr4	+	4301	23	FSM	ENSMUSG00000029033.17	ENSMUST00000079031.6	4301	23	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	17.5901456259036	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGCCTGCTCATTGCCT	NA	False	NA	11	True	AATAAA	-16	NA	155976331	155991708	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_155976899_155980567_155980626_155981023_155981144_155981340_155981395_155983327_155983387_155983873_155984058_155984415_155984461_155984545_155984642_155984743_155984819_155986131_155986245_155986332_155986385_155986588_155986690_155986761_155986874_155987114_155987324_155987416_155987487_155987595_155987691_155987767_155987971_155988207_155988316_155989284_155989384_155989469_155989691_155989866_155989977_155990064_155990176_155990269
transcript_99211.known	chr4	+	1434	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105583.9	1434	8	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	334.708584793838	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	795	False	NA	34	True	TATAAA	-16	NA	156028325	156042168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156028471_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_99216.known	chr4	+	3483	8	FSM	ENSMUSG00000023286.17	ENSMUST00000024056.10	3483	8	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	340.827324764495	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCTGCCTTGTTGACTT	776	False	NA	NA	False	AATAAA	-29	NA	156028306	156044061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156028608_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_99220.known	chr4	+	1309	7	FSM	ENSMUSG00000023286.17	ENSMUST00000103175.8	1309	7	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_1	275.8918870379	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	757	False	NA	34	True	TATAAA	-16	NA	156028287	156042168	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_99225.known	chr4	+	3339	7	FSM	ENSMUSG00000023286.17	ENSMUST00000166489.8	3339	7	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	277.674519696873	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCTGCCTTGTTGACTT	757	False	NA	NA	False	AATAAA	-29	NA	156028287	156044061	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156028608_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_99241.known	chr4	+	1315	8	FSM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	2.37332110369088	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTGCACTCTGCTTAT	NA	False	NA	10	True	AATAAA	-24	NA	156046774	156051086	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156047195_156048999_156049117_156049224_156049346_156049436_156049589_156050050_156050160_156050322_156050414_156050538_156050618_156050860
transcript_99246.known	chr4	-	3184	1	FSM	ENSMUSG00000050796.5	ENSMUST00000052185.5	3184	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTGTTTGGATTCTTCCT	7210	False	NA	NA	False	TTTAAA	-20	NA	156077106	156073922	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_156073900_156077100
transcript_99248.known	chr4	+	1670	8	FSM	ENSMUSG00000029076.15	ENSMUST00000105579.8	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	241.738769445576	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077328	156094667	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156077464_156077609_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
transcript_99251.known	chr4	+	1654	7	FSM	ENSMUSG00000029076.15	ENSMUST00000105578.2	1654	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	268.571995313485	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGCTTGGGATGGTTG	NA	False	NA	136	True	NA	NA	NA	156077833	156094775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156078027_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
transcript_99252.known	chr4	+	5177	7	FSM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_3	38.3521692853076	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGTGCACGTGTGTG	NA	False	NA	6	True	NA	NA	NA	156077367	156098067	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
transcript_99255.nnic	chr4	+	2685	11	NNC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_3	73.1142257019795	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8249	False	NA	20	True	NA	NA	NA	156194432	156211720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr4_+_156194481_156198345_156198459_156201152_156201306_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_99262.known	chr4	+	2528	10	FSM	ENSMUSG00000059939.14	ENSMUST00000072554.13	2528	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.1321644374276	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8255	False	NA	22	True	NA	NA	NA	156194438	156211722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_99270.known	chr4	+	2660	10	FSM	ENSMUSG00000059939.14	ENSMUST00000169550.8	2660	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.5417760689095	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8271	False	NA	20	True	NA	NA	NA	156194454	156211720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_99273.nic	chr4	+	2634	9	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-18	0	intron_retention	FALSE	canonical	3	69	junction_5	54.3310166939659	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8237	False	NA	20	True	NA	NA	NA	156194420	156211720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
transcript_99274.nic	chr4	+	2872	9	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-24	0	intron_retention	FALSE	canonical	3	88	junction_1	48.8618908250592	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8231	False	NA	20	True	NA	NA	NA	156194414	156211720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_99276.nic	chr4	+	2425	9	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	67.7595703572565	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8260	False	NA	20	True	NA	NA	NA	156194443	156211720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_99281.nic	chr4	+	2753	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	69	junction_5	54.8475158963467	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8268	False	NA	20	True	NA	NA	NA	156194451	156211720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
transcript_99283.nic	chr4	+	2985	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	85	junction_1	49.4621067080649	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8268	False	NA	20	True	NA	NA	NA	156194451	156211720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_99285.known	chr4	+	2937	8	FSM	ENSMUSG00000059939.14	ENSMUST00000125786.8	2937	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	44.3313129302804	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8258	False	NA	22	True	NA	NA	NA	156194441	156211722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
transcript_99288.nic	chr4	+	3075	8	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	85	junction_1	45.1781055876604	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8268	False	NA	20	True	NA	NA	NA	156194451	156211720	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
transcript_99293.known	chr4	-	6891	36	FSM	ENSMUSG00000041936.19	ENSMUST00000180572.2	6891	36	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_32	92.1507460631763	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTACCTGCCTGAGTAG	NA	False	NA	NA	False	NA	NA	NA	156281945	156250234	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531_156256880_156257018_156257139_156257224_156257340_156257459_156257588_156257999_156258138_156258241_156258548_156258633_156258740_156258812_156258938_156259027_156259172_156259312_156259478_156259556_156259674_156260675_156260782_156260860_156261010_156261090_156261292_156261412_156261608_156261679_156261899_156262885_156263093_156263239_156263465_156263554_156263780_156263849_156264066_156269544_156269593_156279700_156279963_156281670
transcript_99296.known	chr4	-	2071	5	FSM	ENSMUSG00000041936.19	ENSMUST00000154494.8	2071	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	246.491379159597	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGACTGTGTTTGTACTT	2116	False	NA	-21	True	AATAAA	-18	NA	156253543	156249746	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253002_156253027_156253189
transcript_99297.known	chr4	-	1982	16	FSM	ENSMUSG00000078485.5	ENSMUST00000217885.2	1982	16	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_14	4.43721634461166	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCATCAGGTCAAGGTTGT	NA	False	NA	-10	True	ATTAAA	-16	NA	156312984	156306122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_156306340_156306424_156306474_156306707_156306936_156307096_156307238_156307397_156307539_156307754_156307896_156308022_156308172_156308313_156308390_156308994_156309076_156309181_156309296_156309373_156309499_156309651_156309725_156309804_156309886_156309982_156310130_156312673_156312774_156312865
transcript_99299.known	chr4	-	2723	12	FSM	ENSMUSG00002076083.1	ENSMUST00000105569.5	2723	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	16.0850014835956	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTGGCCCCCTTTGTAC	8248	False	NA	0	True	AATAAA	-40	NA	156319314	156313791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_156314720_156314961_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317680_156317903_156318048_156318171_156318259_156318520_156319112
transcript_99302.nnic	chr4	-	2745	12	NIC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	8	0	combination_of_known_splicesites	TRUE	canonical	2	4	junction_3	23.0615418119388	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTGGCCCCCTTTGTAC	8256	False	NA	0	True	AATAAA	-40	NA	156319306	156313791	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_156314720_156314961_156315144_156315357_156315462_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317680_156317903_156318048_156318171_156318259_156318520_156319112
transcript_99312.nic	chr4	-	2943	11	NIC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	41	junction_7	13.8596536753268	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGCCTGAGGCTGAATGT	8248	False	NA	-22	True	AATAAA	-18	NA	156319314	156313813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317680_156317903_156318048_156318171_156318259_156318520_156319112
transcript_99315.known	chr4	-	2830	11	FSM	ENSMUSG00002076083.1	ENSMUST00020183325.1	2830	11	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	26.227657158046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGCCTGAGGCTGAATGT	8305	False	NA	-22	True	AATAAA	-18	NA	156319257	156313813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_-_156315144_156315357_156315462_156315560_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317747_156317903_156318048_156318171_156318259_156318520_156319112
transcript_99317.nic	chr4	-	2386	11	NIC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	11	44	intron_retention	FALSE	canonical	3	41	junction_7	13.8596536753268	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGTCTTGGTCTCGGTGTT	8259	False	NA	NA	False	NA	NA	NA	156319303	156314359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317680_156317903_156318048_156318171_156318259_156318520_156319112
transcript_99320.nic	chr4	-	3422	10	NIC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	-1	0	intron_retention	FALSE	canonical	3	45	junction_2	11.6999525165228	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGCCTGAGGCTGAATGT	8247	False	NA	-22	True	AATAAA	-18	NA	156319315	156313813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr4_-_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317903_156318048_156318171_156318259_156318520_156319112
transcript_99383.known	chr4	+	2785	19	FSM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	452.638591421947	6549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATACTCTCGGCATTTT	NA	False	NA	26	True	NA	NA	NA	156320466	156332073	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156320528_156320611_156320783_156321799_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325769_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
transcript_99422.nic	chr4	+	2181	18	ISM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	-40	899	-40	-886	5prime_fragment	FALSE	canonical	0	0	junction_6	454.222915260123	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATCAGGAAGAAGAAGATAA	NA	False	NA	14	True	NA	NA	NA	156320426	156331174	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_156320528_156320611_156320783_156321799_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325769_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133
transcript_99446.known	chr4	+	2945	18	FSM	ENSMUSG00000095567.9	ENSMUST00000179886.3	2945	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	464.919288303549	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTTTCCTTTTAAAAATA	NA	False	NA	13	True	NA	NA	NA	156320375	156332060	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr4_+_156320528_156320611_156320783_156321799_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325769_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
transcript_99457.nic	chr4	+	2073	17	ISM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	-40	1717	-40	-1704	5prime_fragment	FALSE	canonical	0	0	junction_6	455.329272168779	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAAAGGACCTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	156320426	156330356	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr4_+_156320528_156320611_156320783_156321799_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325769_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287
transcript_9948.known	chr10	+	3025	5	FSM	ENSMUSG00000036764.13	ENSMUST00000043317.7	3025	5	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_2	1.58113883008419	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAAGAAGCATCTGAC	NA	False	NA	NA	False	NA	NA	NA	63222341	63246355	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_63222555_63231563_63231643_63233017_63233158_63242780_63242986_63243967
transcript_99501.known	chr5	+	438	1	FSM	ENSMUSG00000062353.7	ENSMUST00000118533.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2914	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCCCATGCACGGCTT	NA	False	NA	NA	False	AATACA	-33	NA	3286430	3286868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3286400_3286900
transcript_99503.nic	chr5	+	1879	8	NIC	ENSMUSG00000040274.12	novel	2470	7	NA	NA	-282	-1156	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.8861735494711	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTGCCATTTCGTTTT	NA	False	NA	19	True	NA	NA	NA	3391202	3571069	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_3391575_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
transcript_99507.known	chr5	+	11525	8	FSM	ENSMUSG00000040274.12	ENSMUST00000165117.8	11525	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	33.2627143099493	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGATTTCAGACTCCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	3393892	3581008	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3393972_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
transcript_9951.known	chr10	-	388	2	FSM	ENSMUSG00000097134.3	ENSMUST00000219021.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACCAACCTCTAACTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	66753518	66751414	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_66751739_66753454
transcript_99516.known	chr5	+	1491	11	FSM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	59.9796632201282	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCATGAGAAAGCCCCCAA	NA	False	NA	NA	False	AATGAA	-22	NA	3593837	3619740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
transcript_99518.known	chr5	+	1450	11	FSM	ENSMUSG00000058503.12	ENSMUST00000199666.5	1450	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	76.7604064606227	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCATGAGAAAGCCCCCAA	NA	False	NA	NA	False	AATGAA	-22	NA	3593837	3619740	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609137_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
transcript_99520.known	chr5	+	1961	10	FSM	ENSMUSG00000058503.12	ENSMUST00000196059.5	1961	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	63.1977105383095	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTGTGTCATTTGAAT	NA	False	NA	NA	False	NA	NA	NA	3593843	3619813	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
transcript_99522.nic	chr5	+	488	6	ISM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	-29	10580	-24	-1886	5prime_fragment	FALSE	canonical	3	156	junction_4	23.7991596490296	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGCTTGCTGTGATGCTT	NA	False	NA	NA	False	NA	NA	NA	3593808	3609160	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096
transcript_99523.known	chr5	+	2750	5	FSM	ENSMUSG00000058503.12	ENSMUST00000198598.5	2750	5	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	22.642603648874	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAAGAAGTCCA	NA	False	NA	NA	False	TTTAAA	-29	NA	3593835	3611046	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660
transcript_99525.nic	chr5	+	386	4	ISM	ENSMUSG00000058503.12	ENSMUST00000198598.5	2750	5	-27	2504	-24	-2504	5prime_fragment	FALSE	canonical	3	196	junction_3	8.17856276425687	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGGTAACACCACTTTCT	NA	False	NA	1	True	AAAACA	-45	NA	3593808	3608542	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472
transcript_99526.nic	chr5	+	270	3	ISM	ENSMUSG00000058503.12	ENSMUST00000198598.5	2750	5	-27	3270	-24	-3270	5prime_fragment	FALSE	canonical	3	205	junction_1	5.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGCTCCAAGGCTTTGG	NA	False	NA	NA	False	AAGAAA	-3	NA	3593808	3607776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_3593948_3604638_3604737_3607743
transcript_99529.nic	chr5	+	4122	24	NIC	ENSMUSG00000005907.15	novel	4555	24	NA	NA	9	131	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	17.7117222191902	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTCAATGGTGGACCTC	NA	False	NA	5	True	ATTAAA	-13	NA	3646207	3687092	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_3646367_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
transcript_99530.known	chr5	+	4555	24	FSM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	11.5830199691965	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	3646065	3687232	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
transcript_99537.nic	chr5	+	3729	21	ISM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	148	3173	15	-1852	5prime_fragment	FALSE	canonical	3	55	junction_8	11.6275534829989	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGCCAATTAGTCATTTT	NA	False	NA	5	True	AATAAA	-20	NA	3646213	3684059	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715
transcript_99539.nic	chr5	+	1559	8	NIC	ENSMUSG00000005907.15	novel	4555	24	NA	NA	9	4106	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	22.4353947764578	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAGGAAAAACTGTGT	NA	False	NA	NA	False	AAAAAG	-5	NA	3646207	3660227	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_3646367_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178
transcript_99543.known	chr5	-	2368	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTATCTGCGTGTC	1474	False	NA	-9	True	AATAAA	-21	NA	3646585	3633977	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
transcript_99545.known	chr5	-	2545	5	FSM	ENSMUSG00000007415.16	ENSMUST00000007559.15	2545	5	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_1	62.6592969957372	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTATTTTGGATTTTTAA	NA	False	NA	52	True	ATTAAA	-17	NA	3697934	3689960	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_3691581_3693557_3693742_3694880_3694941_3696783_3696910_3697379
transcript_99549.known	chr5	-	1278	4	FSM	ENSMUSG00000007415.16	ENSMUST00000119783.2	1278	4	0	0	0	0	multi-exon	FALSE	canonical	3	421	junction_2	22.2910046630673	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATGTTACTTTATGCAT	NA	False	NA	-8	True	NA	NA	NA	3697806	3693076	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_3693742_3694880_3694941_3696783_3696910_3697379
transcript_99551.known	chr5	-	641	3	FSM	ENSMUSG00000040302.18	ENSMUST00000124162.2	641	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATTCAGAAGTGGGGTTA	1977	False	NA	NA	False	AGTAAA	-2	NA	3646082	3641482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_3641816_3645254_3645446_3645965
transcript_99552.nic	chr5	-	703	2	ISM	ENSMUSG00000007415.16	ENSMUST00000119783.2	1278	4	-198	3755	-70	-3755	5prime_fragment	FALSE	canonical	3	427	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTCCACGAAAGGAAAAGG	NA	False	NA	-14	True	AATACA	-27	NA	3698004	3696831	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_3696910_3697379
transcript_99553.known	chr5	-	6426	20	FSM	ENSMUSG00000040351.12	ENSMUST00000043551.11	6426	20	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_3	19.1839036868105	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCATTCTCTGCCTTCTG	NA	False	NA	-5	True	AATAAA	-18	NA	3852925	3739999	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_3743497_3743771_3743906_3744778_3744876_3750355_3750408_3751804_3751984_3752891_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
transcript_99559.nic	chr5	-	2651	15	ISM	ENSMUSG00000040351.12	ENSMUST00000043551.11	6426	20	-216	12924	-216	-2373	5prime_fragment	FALSE	canonical	3	68	junction_9	14.488559878295	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCACAAAGAAAGAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	3853141	3752923	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
transcript_99565.nic	chr5	-	2513	10	ISM	ENSMUSG00000040351.12	ENSMUST00000043551.11	6426	20	-216	32150	-216	11530	5prime_fragment	FALSE	canonical	3	68	junction_4	17.1269767715535	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCTTGGAATTTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	3853141	3772149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
transcript_99568.known	chr5	-	1569	6	FSM	ENSMUSG00000040351.12	ENSMUST00000199763.2	1569	6	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_5	15.4324333790883	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTTAGTTTATAGTATA	NA	False	NA	NA	False	AATAAA	-16	NA	3852787	3783679	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
transcript_99569.nnic	chr5	-	1236	5	NNC	ENSMUSG00000040351.12	novel	2572	19	NA	NA	-31071	11530	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_4	33.9742549587184	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCTTGGAATTTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	3783203	3772149	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3782853
transcript_99577.known	chr5	+	2930	17	FSM	ENSMUSG00000000600.16	ENSMUST00000080085.9	2930	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	61.5435567301728	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7985	False	NA	10	True	AATAAA	-23	NA	3853183	3891359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3853484_3856464_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
transcript_9958.nic	chr10	+	4917	10	NIC	ENSMUSG00000037876.18	novel	3076	10	NA	NA	-101	1574	combination_of_known_junctions	FALSE	canonical	3	46	junction_5	52.3407638037081	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACTAATAAAATGGAAAATT	NA	False	NA	NA	False	GATAAA	-3	NA	66932082	67062315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_66932498_66993685_66993851_67025514_67025629_67051048_67051155_67052761_67052887_67053816_67053961_67054055_67054249_67054732_67056415_67059787_67059961_67060515
transcript_99580.nic	chr5	+	3312	17	NIC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	-336	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	59.7316590574044	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7649	False	NA	10	True	AATAAA	-23	NA	3852847	3891359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
transcript_99581.nic	chr5	+	3077	17	NIC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	-17	84	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	59.7316590574044	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGATGGGTTTCCTTGCAT	7968	False	NA	7	True	ATTAAA	-14	NA	3853166	3891443	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
transcript_99583.nnic	chr5	+	2971	17	NNC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	71.3704026540414	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7968	False	NA	10	True	AATAAA	-23	NA	3853166	3891359	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_3853484_3856440_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
transcript_99589.known	chr5	+	5582	16	FSM	ENSMUSG00000000600.16	ENSMUST00000171023.8	5582	16	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_15	46.0519513400054	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAGCATTTTATTGACTA	8206	False	NA	NA	False	NA	NA	NA	3853404	3894303	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3890873
transcript_99605.known	chr5	-	1376	2	FSM	ENSMUSG00000040429.7	ENSMUST00000044746.5	1376	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTATTTTGTATGTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	3943933	3940580	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_3941898_3943874
transcript_99607.known	chr5	-	2413	2	FSM	ENSMUSG00000040429.7	ENSMUST00000117463.2	2413	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACATTTATTTTGTATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	3943907	3940583	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_3941898_3942808
transcript_99613.known	chr5	+	2010	8	FSM	ENSMUSG00000040407.19	ENSMUST00000143365.8	2010	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.1145527311522	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAAAATGCTG	NA	False	NA	NA	False	AATAAA	-13	NA	3978177	4010989	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111
transcript_99617.nic	chr5	+	941	7	ISM	ENSMUSG00000040407.19	ENSMUST00000143365.8	2010	8	101	3279	5	0	5prime_fragment	FALSE	canonical	3	19	junction_3	6.50640709864771	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAACAGCTGCAAGATTA	NA	False	NA	NA	False	NA	NA	NA	3978278	4007710	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623
transcript_99618.nic	chr5	+	1257	7	ISM	ENSMUSG00000040407.19	ENSMUST00000143365.8	2010	8	-124	3188	0	91	5prime_fragment	FALSE	canonical	3	19	junction_3	6.50640709864771	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAAGCTAGCTCATGTG	NA	False	NA	NA	False	NA	NA	NA	3978053	4007801	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623
transcript_99623.known	chr5	-	3931	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGATTTTCTTTGCCAAT	NA	False	NA	-22	True	ATTAAA	-22	NA	4154746	4131144	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
transcript_99633.known	chr5	+	1368	2	FSM	ENSMUSG00000053178.6	ENSMUST00000177258.2	1368	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATTTTGTATGTATT	NA	False	NA	NA	False	AATAAA	-22	NA	4242366	4247651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_4242419_4246335
transcript_99634.known	chr5	-	4197	1	FSM	ENSMUSG00000044674.7	ENSMUST00000054294.7	4197	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTGTGTGCCTGAA	NA	False	NA	NA	False	AATAAA	-28	NA	4808035	4803838	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_4803800_4808000
transcript_99635.known	chr5	-	3477	4	FSM	ENSMUSG00000046798.15	ENSMUST00000115445.8	3477	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	28.2842712474619	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGCTTGTACATACGCC	NA	False	NA	NA	False	AATAAA	-18	NA	5564730	5555222	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564627
transcript_99636.known	chr5	-	3597	4	FSM	ENSMUSG00000046798.15	ENSMUST00000060947.14	3597	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	5.18544972870135	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	-3	True	ATTAAA	-17	NA	5564873	5555108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564764
transcript_99638.nic	chr5	-	3720	4	NIC	ENSMUSG00000046798.15	novel	3597	4	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	26.5455583227527	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	-3	True	ATTAAA	-17	NA	5564924	5555108	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_5558455_5561070_5561195_5563161_5563252_5564764
transcript_99643.nnic	chr5	-	3059	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	GATAAA	-19	NA	5609570	5587453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
transcript_99644.known	chr5	-	2972	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	GATAAA	-19	NA	5609538	5587453	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
transcript_99647.known	chr5	-	648	1	FSM	ENSMUSG00000040464.16	ENSMUST00000198799.2	648	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAATAAAGAAAAAGTCA	NA	False	NA	NA	False	AATAAA	-13	NA	5609516	5608868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_5608900_5609500
transcript_99648.known	chr5	-	4956	23	FSM	ENSMUSG00000040473.16	ENSMUST00000054865.13	4956	23	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_19	2.58132197536376	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCTGGTTTTATTACTCC	NA	False	NA	NA	False	AATAAA	-22	NA	5714239	5629277	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_5631367_5631903_5632009_5632441_5632529_5634650_5634849_5636355_5636433_5637140_5637279_5639119_5639313_5643771_5643854_5645920_5646040_5654273_5654393_5663685_5663851_5667168_5667386_5668947_5669070_5669166_5669216_5671919_5672044_5675749_5675928_5676008_5676159_5690128_5690228_5694423_5694501_5696935_5697046_5699789_5699856_5707787_5707848_5713907
transcript_9965.nic	chr10	+	1300	7	NIC	ENSMUSG00000037876.18	novel	3076	10	NA	NA	100	72	combination_of_known_junctions	FALSE	canonical	3	46	junction_5	58.9802226739325	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGATGAAGGAAGATAAAT	NA	False	NA	NA	False	NA	NA	NA	66932003	67054207	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_+_66932498_66993685_66993851_67025514_67025629_67051048_67051155_67052761_67052887_67053816_67053961_67054055
transcript_99650.known	chr5	-	3657	6	FSM	ENSMUSG00000015653.14	ENSMUST00000015797.11	3657	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	7.4565407529229	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGCTGTTCTCTGTGAGT	5284	False	NA	NA	False	NA	NA	NA	5744067	5721490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5743957
transcript_99651.known	chr5	-	10408	6	FSM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	11.3384302264467	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAATTACAAAACTGG	4773	False	NA	NA	False	AATAAA	-17	NA	5744578	5714828	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5744379
transcript_99664.known	chr5	-	3285	5	FSM	ENSMUSG00000015653.14	ENSMUST00000115424.9	3285	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	12.5797456254091	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTATCTTTCCCACCAT	5291	False	NA	NA	False	AATAAA	-19	NA	5744060	5721729	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5743957
transcript_99665.known	chr5	-	1230	5	FSM	ENSMUSG00000015652.10	ENSMUST00000015796.9	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.38357266740185	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTATCACAACTGTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	5799326	5786316	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_5786674_5789795_5789961_5790349_5790863_5792825_5792941_5799246
transcript_99666.known	chr5	+	2251	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAACATTCCATAAGCA	NA	False	NA	-16	True	AGTAAA	-21	NA	8106526	8119151	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
transcript_99671.known	chr5	+	640	6	FSM	ENSMUSG00000003161.16	ENSMUST00000003245.10	640	6	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_3	16.5819178625393	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATTCCTTTGAAGTTT	NA	False	NA	-11	True	NA	NA	NA	8109341	8117726	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
transcript_99672.known	chr5	-	9056	31	FSM	ENSMUSG00000040537.18	ENSMUST00000115386.8	9056	31	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_3	10.2407139508055	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCTCTCTTTCATGT	6239	False	NA	-3	True	AATAAA	-19	NA	8417982	8122351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_8128707_8132145_8132270_8137981_8138069_8142339_8142407_8142730_8142832_8157001_8157020_8161894_8161986_8166544_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200_8417362_8417875
transcript_99673.known	chr5	-	8969	30	FSM	ENSMUSG00000040537.18	ENSMUST00000050166.14	8969	30	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	8.66814524415925	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCTCTCTTTCATGT	6239	False	NA	-3	True	AATAAA	-19	NA	8417982	8122351	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_8128707_8132145_8132270_8142339_8142407_8142730_8142832_8157001_8157020_8161894_8161986_8166544_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609_8282677_8379979_8380057_8417200_8417362_8417875
transcript_99676.known	chr5	-	2402	12	FSM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	47.2513937876549	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCTGAGAATAAAAATGAA	NA	False	NA	NA	False	AATAAA	-22	NA	8472716	8447010	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
transcript_99679.nic	chr5	-	1295	11	ISM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	-46	2678	-46	-1364	5prime_fragment	FALSE	canonical	3	396	junction_2	49.471304814003	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAATTTGCCAAAGATACT	NA	False	NA	NA	False	AAGAAA	-2	NA	8472762	8449688	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
transcript_99680.known	chr5	-	2509	10	FSM	ENSMUSG00000002297.17	ENSMUST00000166364.8	2509	10	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	51.6858984517579	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGTTGTCTAGTTGTATTG	NA	False	NA	NA	False	TATAAA	-4	NA	8472681	8451660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
transcript_99684.nic	chr5	-	501	2	ISM	ENSMUSG00000002297.17	ENSMUST00000170927.2	2275	3	-121	2815	-99	942	5prime_fragment	FALSE	canonical	3	539	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATAAAGGAACTCGGAGG	NA	False	NA	NA	False	NA	NA	NA	8472815	8471241	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_8471394_8472466
transcript_99687.known	chr5	+	2749	12	FSM	ENSMUSG00000054099.12	ENSMUST00000196727.5	2749	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	12.5210566448736	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGATGTGTATTTGTG	NA	False	NA	NA	False	ATTAAA	-10	NA	8472857	8504789	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480430_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
transcript_99691.known	chr5	+	2602	11	FSM	ENSMUSG00000054099.12	ENSMUST00000170496.6	2602	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	12.7342059037853	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTTGTTTTACATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	8472898	8504736	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_8473040_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
transcript_99694.known	chr5	+	1481	3	FSM	ENSMUSG00000054099.12	ENSMUST00000199817.5	1481	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	11	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATGTTGTTAAAATT	NA	False	NA	NA	False	AATAAA	-23	NA	8472857	8478634	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_8473040_8477195_8477268_8477407
transcript_99695.known	chr5	-	1891	11	FSM	ENSMUSG00000040570.15	ENSMUST00000115378.2	1891	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	15.6920361967464	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAATATTACATTTG	NA	False	NA	NA	False	NA	NA	NA	8672952	8542266	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_8542590_8544783_8544906_8562260_8562408_8570858_8571017_8578605_8578775_8598235_8598317_8609411_8609502_8619494_8619581_8629024_8629159_8653869_8653986_8672487
transcript_99696.known	chr5	-	3677	10	FSM	ENSMUSG00000040570.15	ENSMUST00000047485.15	3677	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	10.9352753469485	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGTCTTTTTCCTTGA	NA	False	NA	1	True	ATTAAA	-19	NA	8672952	8540333	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_8542590_8544783_8544906_8570858_8571017_8578605_8578775_8598235_8598317_8609411_8609502_8619494_8619581_8629024_8629159_8653869_8653986_8672487
transcript_99698.known	chr5	+	4997	28	FSM	ENSMUSG00000040584.9	ENSMUST00000047753.5	4997	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	64.0965278576142	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAATGGTTATGTAAGTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	8710076	8798575	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_8710223_8710661_8710733_8714545_8714595_8724682_8724843_8733383_8733436_8735220_8735413_8736126_8736299_8744065_8744191_8748485_8748658_8751608_8751723_8751866_8751978_8752152_8752279_8752368_8752573_8752792_8752964_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_997.nnic	chr1	-	2669	16	NNC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	-264	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_5	46.2106288879758	149	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTCTGGAGTTCCTTC	NA	False	NA	-1	True	ATTAAA	-18	NA	36722528	36601776	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
transcript_99704.nnic	chr5	+	3873	15	NNC	ENSMUSG00000040584.9	novel	2705	10	NA	NA	-8896	-52	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	62.7505589860459	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8760922	8798518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_8761721_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_99708.nnic	chr5	+	3246	15	NNC	ENSMUSG00000040584.9	novel	2705	10	NA	NA	-8482	-52	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	61.2864219073367	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8761336	8798518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_8761508_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_99714.nnic	chr5	+	2387	7	NNC	ENSMUSG00000040584.9	novel	494	2	NA	NA	-155	-52	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	78.9460082728837	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8783132	8798518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_8783506_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_99715.nic	chr5	+	1848	6	ISM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	13358	640	-111	-640	3prime_fragment	FALSE	canonical	3	112	junction_1	56.9582303095874	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCATTCATATTTTTGAG	NA	False	NA	NA	False	TATAAA	-17	NA	8783176	8797930	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_99716.nic	chr5	+	2494	6	ISM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	13300	52	-169	-52	3prime_fragment	FALSE	canonical	3	112	junction_1	56.9582303095874	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8783118	8798518	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_99719.known	chr5	+	4306	28	FSM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_6	57.377196351684	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	NA	False	NA	10	True	ATTAAA	-17	NA	8848185	8916315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557_8860616_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_99725.nnic	chr5	+	1680	7	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-178	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	90.3119593409422	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5206	False	NA	10	True	ATTAAA	-17	NA	8899154	8916315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_8899419_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_99726.nic	chr5	+	1811	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50829	102	-318	-102	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTTTAATTTCTACCC	5066	False	NA	12	True	AATAAA	-16	NA	8899014	8916213	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_99727.nic	chr5	+	1913	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50829	0	-318	0	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5066	False	NA	10	True	ATTAAA	-17	NA	8899014	8916315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_99728.nnic	chr5	+	1452	6	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-293	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	91.0173609812985	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	7145	False	NA	10	True	ATTAAA	-17	NA	8901093	8916315	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_+_8901271_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_99733.nic	chr5	+	281	2	ISM	ENSMUSG00000028970.10	ENSMUST00000196580.5	690	6	-73	14845	-67	-14845	5prime_fragment	FALSE	canonical	3	144	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGCCAAATTATTTCACGT	NA	False	NA	11	True	AAAAAG	-3	NA	8848079	8848806	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_8848290_8848735
transcript_99735.known	chr5	+	3026	1	FSM	ENSMUSG00000028970.10	ENSMUST00000196048.2	3026	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAAAGACC	7911	False	NA	NA	False	NA	NA	NA	8901859	8904885	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_8901900_8904900
transcript_99738.known	chr5	-	2996	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTTGAAAACAATGATTGT	NA	False	NA	-11	True	AATAAA	-30	NA	9047324	9016032	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
transcript_9974.known	chr10	+	2772	3	FSM	ENSMUSG00000037876.18	ENSMUST00000174062.8	2772	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAAAAAAAAAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	66931903	67027527	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_66932498_66993685_66993851_67025514
transcript_9975.nnic	chr10	-	4586	9	NNC	ENSMUSG00000019873.9	novel	2925	9	NA	NA	-44	-841	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	56.3869167005964	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCTGTGAAAAACAAAAAGG	NA	False	NA	NA	False	ATTAAA	-10	NA	66932768	66845808	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_66848265_66848311_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
transcript_99750.known	chr5	-	3806	18	FSM	ENSMUSG00000042508.17	ENSMUST00000071921.13	3806	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_6	37.7529760049699	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGAATTCCTTGCT	NA	False	NA	66	True	NA	NA	NA	9211776	9168800	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
transcript_99755.known	chr5	-	3892	18	FSM	ENSMUSG00000042508.17	ENSMUST00000184888.8	3892	18	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_9	65.4104951209844	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGATTTTGAGCCATGC	NA	False	NA	-6	True	AATAAA	-19	NA	9211759	9168872	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180653_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
transcript_9976.nnic	chr10	-	3126	9	NNC	ENSMUSG00000019873.9	novel	2925	9	NA	NA	-44	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.3869167005964	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGTTAAAACAAACTTAT	NA	False	NA	NA	False	NA	NA	NA	66932768	66847268	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_66848265_66848311_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
transcript_99760.known	chr5	-	3498	17	FSM	ENSMUSG00000042508.17	ENSMUST00000095017.11	3498	17	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_5	37.579706957346	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGATTTTGAGCCATGCA	NA	False	NA	-5	True	AATAAA	-20	NA	9211749	9168871	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
transcript_9978.nnic	chr10	-	2743	9	NNC	ENSMUSG00000019873.9	novel	2925	9	NA	NA	-44	-201	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.3869167005964	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATCTTGTATCTCCATC	NA	False	NA	NA	False	AATAAA	-24	NA	66932768	66847651	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr10_-_66848265_66848311_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
transcript_99790.known	chr5	+	1040	5	FSM	ENSMUSG00000079659.6	ENSMUST00000115365.3	1040	5	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	62.4019230472908	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTTTTTTCCTCCTTT	NA	False	NA	10	True	AATAAA	-21	NA	9150746	9169045	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_9150860_9151216_9151396_9166479_9166531_9167458_9167564_9168453
transcript_99796.known	chr5	-	3029	4	FSM	ENSMUSG00000042508.17	ENSMUST00000185193.8	3029	4	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_3	21.853044537445	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAAAAAGATCCA	NA	False	NA	NA	False	NA	NA	NA	9211749	9196367	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_9199023_9200375_9200493_9201797_9201919_9211613
transcript_9980.known	chr10	-	5430	8	FSM	ENSMUSG00000019873.9	ENSMUST00000020023.9	5430	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_7	23.5068379109447	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTATTTTTTTTTCTT	NA	False	NA	1	True	AATAAA	-24	NA	66932724	66844967	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
transcript_99800.known	chr5	+	4115	21	FSM	ENSMUSG00000056004.17	ENSMUST00000134991.8	4115	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.3685438564654	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACCTTTGTGTTTATTTC	NA	False	NA	NA	False	AATAAA	-17	NA	9316131	9513983	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_9316457_9430277_9430399_9449180_9449377_9460583_9460732_9467984_9468072_9470616_9470723_9471504_9471658_9472301_9472391_9477689_9477871_9478404_9478534_9484620_9484712_9485326_9485430_9487705_9487844_9490719_9490984_9491633_9491808_9495363_9495554_9496893_9496991_9497719_9497822_9509179_9509307_9511321_9511501_9512868
transcript_99803.known	chr5	+	2287	3	FSM	ENSMUSG00000073226.10	ENSMUST00000189825.2	2287	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCACGTGGCCCTGGCT	3881	False	NA	NA	False	NA	NA	NA	10237838	10287722	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_10237957_10283829_10284043_10285766
transcript_99804.known	chr5	+	6861	17	FSM	ENSMUSG00000063531.8	ENSMUST00000073957.8	6861	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.82752393965168	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGCTATCAGAGAAGT	NA	False	NA	NA	False	AATAAA	-15	NA	14075289	14306703	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_14076039_14193887_14194049_14212201_14212262_14214072_14214193_14260304_14260399_14274300_14274421_14275566_14275710_14276429_14276545_14276648_14276719_14280120_14280266_14282008_14282232_14283638_14283731_14286055_14286098_14286280_14286448_14290583_14290652_14290976_14291117_14302351
transcript_99807.known	chr5	-	3135	8	FSM	ENSMUSG00000057614.7	ENSMUST00000074694.7	3135	8	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_3	12.7711409363583	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCTATTGACTGAATTT	NA	False	NA	-7	True	AATAAA	-21	NA	18565353	18470132	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_18472208_18476823_18476978_18478443_18478574_18494521_18494651_18496460_18496619_18513550_18513693_18513780_18513824_18565049
transcript_99808.nic	chr5	-	1166	7	ISM	ENSMUSG00000057614.7	ENSMUST00000074694.7	3135	8	-141	6726	-141	-6726	5prime_fragment	FALSE	canonical	3	135	junction_2	13.6554832291729	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCCCTCACGATATGCT	NA	False	NA	NA	False	AATAAA	-4	NA	18565494	18476858	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_18476978_18478443_18478574_18494521_18494651_18496460_18496619_18513550_18513693_18513780_18513824_18565049
transcript_99810.known	chr5	-	4840	18	FSM	ENSMUSG00000039987.16	ENSMUST00000118174.8	4840	18	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_9	38.2607155309617	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGCACTTCATAGTTTG	NA	False	NA	-4	True	AATAAA	-13	NA	21087122	20963660	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_99812.nic	chr5	-	4725	18	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	-38	-109	combination_of_known_junctions	FALSE	canonical	3	53	junction_9	51.0853143531539	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTGTGTGTTTTTTT	NA	False	NA	-11	True	AATAAA	-13	NA	21087160	20963769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987446_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_99824.nic	chr5	-	4603	17	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	-38	-109	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	58.3812563563855	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTGTGTGTTTTTTT	NA	False	NA	-11	True	AATAAA	-13	NA	21087160	20963769	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_99838.known	chr5	-	2000	8	FSM	ENSMUSG00000039987.16	ENSMUST00000140147.2	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_2	38.2152870362805	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAAAGAAATTAGAATAT	NA	False	NA	NA	False	NA	NA	NA	21087076	20998299	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_99839.nic	chr5	-	735	6	ISM	ENSMUSG00000039987.16	ENSMUST00000140147.2	2000	8	-84	9887	-38	2495	5prime_fragment	FALSE	canonical	3	193	junction_1	31.8081750498201	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTACTGCTTGTTAAAC	NA	False	NA	NA	False	NA	NA	NA	21087160	21008186	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_9984.nnic	chr10	-	1346	6	NIC	ENSMUSG00000019873.9	novel	838	3	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	65.7346179725721	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTGACATCTTTTATTTA	NA	False	NA	NA	False	ATTAAA	-21	NA	66932768	66864704	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr10_-_66865466_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
transcript_99842.known	chr5	+	1147	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_1	0	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCACATGCCTCTTAC	NA	False	NA	8	True	AATAAA	-18	NA	21087188	21091868	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_21087654_21091186
transcript_99843.known	chr5	+	2178	1	FSM	ENSMUSG00000045435.10	ENSMUST00000196723.2	2178	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTGAAAAAAAAATAAGAGA	NA	False	NA	NA	False	NA	NA	NA	21087504	21089682	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_21087500_21089700
transcript_99844.known	chr5	-	5550	8	FSM	ENSMUSG00000039968.10	ENSMUST00000036489.10	5550	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	8.29802041797578	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCTTTTTACCTTTGTT	NA	False	NA	-18	True	AATAAA	-18	NA	21156820	21098025	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21101703_21101790_21101900_21107285_21107454_21110777_21110921_21113104_21113243_21124522_21125161_21132617_21132729_21156254
transcript_99846.known	chr5	-	7651	7	FSM	ENSMUSG00000039968.10	ENSMUST00000196780.5	7651	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	8.0363756341608	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGACAATTCAGTTTGTT	NA	False	NA	NA	False	AATAAA	-43	NA	21161396	21100588	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21101900_21107285_21107454_21110777_21110921_21113104_21113243_21124522_21125161_21132617_21132729_21156254
transcript_99851.known	chr5	-	3280	18	FSM	ENSMUSG00000028771.14	ENSMUST00000030556.8	3280	18	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_17	13.1951023733656	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTGTATTGTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-25	NA	21260909	21191642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439_21214583_21216682_21216743_21219691_21219764_21220708_21220748_21224210_21224307_21227015_21227093_21234773_21234883_21260646
transcript_99854.nic	chr5	-	3244	17	NIC	ENSMUSG00000028771.14	novel	3280	18	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_16	18.4483019205021	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTGTATTGTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-25	NA	21260982	21191642	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439_21214583_21216682_21216743_21219691_21219764_21220708_21220748_21224210_21224307_21227015_21227093_21260646
transcript_99857.known	chr5	+	3745	31	FSM	ENSMUSG00000039934.13	ENSMUST00000036031.13	3745	31	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.03064165558269	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTATTTTAAATGGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	21391286	21496721	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_21391458_21399397_21399475_21401042_21401100_21412238_21412309_21412585_21412640_21422387_21422477_21426223_21426294_21427387_21427438_21431241_21431347_21431771_21431832_21433021_21433066_21434158_21434245_21447802_21447881_21451896_21451999_21455738_21455832_21455936_21456155_21458367_21458438_21458956_21459040_21462867_21462922_21474899_21475029_21475553_21475613_21476214_21476247_21477979_21478042_21483042_21483139_21485993_21486065_21486505_21486601_21492674_21492795_21493585_21493648_21494786_21494889_21495042_21495143_21495535
transcript_99858.known	chr5	+	3027	8	FSM	ENSMUSG00000047221.6	ENSMUST00000056045.5	3027	8	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_1	12.2873753029984	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTGTCACTGTCCCA	NA	False	NA	91	True	AATAAA	-13	NA	21629955	21687122	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_21630575_21634721_21634832_21638688_21638782_21643697_21643837_21652313_21652356_21660779_21660876_21664156_21664292_21685329
transcript_9986.known	chr10	-	1813	4	FSM	ENSMUSG00000075000.12	ENSMUST00000077839.13	1813	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	30.2691628926573	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTTGAGTATGACTTG	NA	False	NA	NA	False	AATAAA	-21	NA	67121084	67102467	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_67103946_67105884_67105926_67111348_67111434_67120875
transcript_99866.known	chr5	+	2154	4	FSM	ENSMUSG00000039883.6	ENSMUST00000035651.6	2154	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACAAGGTTCATTTT	NA	False	NA	NA	False	AATAAA	-10	NA	21748560	21780902	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_21748718_21765397_21766298_21775217_21775374_21779961
transcript_99867.known	chr5	-	501	1	FSM	ENSMUSG00000106294.2	ENSMUST00000199822.2	501	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATACCAAAGAGGGAAA	NA	False	NA	NA	False	AATGAA	-34	NA	21819492	21818991	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21819000_21819500
transcript_99870.known	chr5	+	2221	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCAATTTGTTTTAT	NA	False	NA	6	True	AGTAAA	-26	NA	21850876	21867692	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
transcript_99873.known	chr5	+	1167	6	FSM	ENSMUSG00000038525.17	ENSMUST00000148873.8	1167	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	154.901775328755	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGGTTGCTCCTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	21850810	21866614	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_21851234_21853659_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
transcript_99877.known	chr5	-	3954	5	FSM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	48.8108594474631	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAAGATACCTGAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	21906392	21867898	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21905972
transcript_99878.known	chr5	-	3724	5	FSM	ENSMUSG00000044968.17	ENSMUST00000060899.9	3724	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	45.4883226773641	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTGAAAAGATACCTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	21906394	21867900	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21906202
transcript_9988.known	chr10	-	4558	1	FSM	ENSMUSG00000057134.7	ENSMUST00000075686.7	4558	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTAGAAATAATGTTGCTTA	NA	False	NA	NA	False	AATAAA	-17	NA	67384898	67380340	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_67380300_67384900
transcript_9989.known	chr10	-	4259	5	FSM	ENSMUSG00000037855.16	ENSMUST00000064656.8	4259	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	4.58257569495584	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTCTGTTCCTTCTAG	NA	False	NA	1	True	AATAAA	-20	NA	67748492	67721932	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_67724922_67725782_67725821_67733263_67733445_67745030_67745790_67748200
transcript_99893.known	chr5	+	1615	13	FSM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	0	0	0	0	multi-exon	TRUE	canonical	3	306	junction_5	33.8430815184827	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTAGTCTGTTATATGT	NA	False	NA	16	True	AATAAA	-18	NA	21942138	21962150	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
transcript_99895.known	chr5	-	2133	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	0	0	0	0	multi-exon	FALSE	canonical	3	849	junction_11	91.8299209136107	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATAGTCATCATTTAA	NA	False	NA	3	True	AATAAA	-30	NA	21990249	21962264	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_99896.known	chr5	-	3758	16	FSM	ENSMUSG00000029014.15	ENSMUST00000132962.8	3758	16	0	0	0	0	multi-exon	FALSE	canonical	3	849	junction_10	94.8326244847556	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTTTCACTTGGAATTA	NA	False	NA	-11	True	AATAAA	-16	NA	21990168	21962278	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_99897.known	chr5	-	2416	16	FSM	ENSMUSG00000029014.15	ENSMUST00000115193.8	2416	16	0	0	0	0	multi-exon	FALSE	canonical	3	849	junction_10	94.8316871561868	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGGAATTATAGTCATCA	NA	False	NA	-2	True	AATAAA	-25	NA	21990182	21962269	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_9990.known	chr10	-	1745	3	FSM	ENSMUSG00000037855.16	ENSMUST00000138543.2	1745	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAATAAATAAAAAC	NA	False	NA	NA	False	NA	NA	NA	67748265	67732523	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_-_67733445_67745030_67745790_67748200
transcript_99902.nic	chr5	-	1208	10	ISM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	-31	9394	-31	-243	5prime_fragment	FALSE	canonical	3	849	junction_4	70.1782562787149	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGGAAGAAGTTAGACA	NA	False	NA	3	True	NA	NA	NA	21990280	21971658	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_99903.known	chr5	-	1994	17	FSM	ENSMUSG00000029014.15	ENSMUST00000115195.8	1994	17	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_16	257.325297228527	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTTCACTTGGAATT	NA	False	NA	-12	True	AATAAA	-15	NA	21990214	21962279	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988147_21989986
transcript_99904.nic	chr5	-	1093	9	ISM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	-31	11240	-31	-2089	5prime_fragment	FALSE	canonical	3	849	junction_3	68.1403652397021	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGCCAAGAAAGAAGCAGAAA	NA	False	NA	NA	False	GATAAA	-22	NA	21990280	21973504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_99906.nic	chr5	-	1041	8	ISM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	-31	11379	-31	-2228	5prime_fragment	FALSE	canonical	3	849	junction_2	65.6499685251024	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAGAGTTAATGGGGT	NA	False	NA	NA	False	AAAAAG	-32	NA	21990280	21973643	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_99908.nic	chr5	-	941	7	ISM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	-31	13226	-31	3029	5prime_fragment	FALSE	canonical	3	849	junction_1	70.8652869103688	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAATGGTATGTATGTCA	NA	False	NA	19	True	AAAAAG	-6	NA	21990280	21975490	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_-_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_99909.known	chr5	-	1011	6	FSM	ENSMUSG00000029014.15	ENSMUST00000147987.2	1011	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_1	59.5449410109709	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCATTGAGCCATCTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	21990152	21978519	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_99911.known	chr5	-	1132	5	FSM	ENSMUSG00000029014.15	ENSMUST00000115192.2	1132	5	0	0	0	0	multi-exon	FALSE	canonical	3	985	junction_1	15.0665191733194	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTAGTCGTGGTTTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	21990183	21979504	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_99912.known	chr5	+	1775	13	FSM	ENSMUSG00000028932.9	ENSMUST00000239497.2	1775	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	502.901056095752	911	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTGTCAGTGCTTC	NA	False	NA	11	True	AATAAA	-7	NA	21990280	22008775	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_21990516_21991647_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
transcript_99923.nic	chr5	-	2030	14	NIC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_12	150.475380832502	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	22755394	22691486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751503_22752921_22753015_22755189
transcript_99924.known	chr5	-	2103	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_10	41.6678895284064	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	22755373	22691486	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
transcript_99932.known	chr5	-	2117	13	FSM	ENSMUSG00000029012.12	ENSMUST00000135906.8	2117	13	0	0	0	0	multi-exon	TRUE	canonical	3	527	junction_9	41.555434863164	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTCTTTGGTTCTG	NA	False	NA	-3	True	AATAAA	-18	NA	22755302	22691482	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
transcript_99936.known	chr5	-	555	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	False	NA	NA	False	AAGAAA	-34	NA	22818180	22817625	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_22817600_22818200
transcript_99937.known	chr5	-	1983	1	FSM	ENSMUSG00000073147.4	ENSMUST00000189045.2	1983	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGGTAAATATTCGTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	23639267	23637284	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_23637300_23639300
transcript_99938.known	chr5	-	2110	1	FSM	ENSMUSG00000073147.4	ENSMUST00000101522.3	2110	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGTGGAATAACCTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	23638917	23636807	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_23636800_23638900
transcript_9994.known	chr10	+	2246	12	FSM	ENSMUSG00000037846.19	ENSMUST00000117086.2	2246	12	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	13.4870614459296	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTGTAATACTTAATAG	NA	False	NA	NA	False	AATACA	-19	NA	67815544	67878128	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871618_67871782_67875860_67875969_67877208
transcript_99941.nic	chr5	-	3625	16	NIC	ENSMUSG00000062604.12	novel	4259	15	NA	NA	-8	-690	combination_of_known_junctions	FALSE	canonical	3	183	junction_8	31.7487357578569	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTGCCTTGCTTATTAC	NA	False	NA	-5	True	ATTAAA	-22	NA	23881020	23711139	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_99948.nnic	chr5	-	961	10	NNC	ENSMUSG00000062604.12	novel	946	9	NA	NA	-8	17	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_2	64.2716073097043	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGAAAAAGAAACAGAAGA	NA	False	NA	NA	False	NA	NA	NA	23881020	23730711	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_23730744_23731787_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_99951.nic	chr5	-	956	9	NIC	ENSMUSG00000062604.12	novel	946	9	NA	NA	-8	-1059	combination_of_known_junctions	FALSE	canonical	3	183	junction_1	32.7945784391262	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATTCACATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	23881020	23731787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_99952.nnic	chr5	-	929	9	NNC	ENSMUSG00000062604.12	novel	946	9	NA	NA	-8	-1059	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	68.162375068655	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATTCACATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	23881020	23731787	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_99953.nnic	chr5	-	944	9	NIC	ENSMUSG00000062604.12	novel	946	9	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_7	103.876052942918	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACGGAGTGGCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	23881020	23732944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23821324_23821389_23880717_23880773_23880855
transcript_99955.nic	chr5	-	880	8	NIC	ENSMUSG00000062604.12	novel	946	9	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	228	junction_6	19.3369689286335	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACGGAGTGGCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	23881020	23732944	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NIC_chr5_-_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_99960.nic	chr5	+	2167	14	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	12	17835	4	0	5prime_fragment	FALSE	canonical	3	18	junction_10	3.24721091064699	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTGGGAATCTTGTAG	NA	False	NA	35	True	NA	NA	NA	23639450	23691398	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299
transcript_99961.known	chr5	+	7317	27	FSM	ENSMUSG00000029004.16	ENSMUST00000115128.8	7317	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.24166024173517	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGATATGAAAATATGTTTA	NA	False	NA	NA	False	TATAAA	-31	NA	23639446	23709233	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_+_23639782_23651523_23651597_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196_23698506_23700983_23701239_23701401_23701547_23701969_23702221_23702536_23702594_23702725_23703293_23704279_23704591_23705253_23705343_23705448_23705575_23705724_23705811_23706521
transcript_99962.nic	chr5	+	1960	13	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	-40	18784	-40	0	5prime_fragment	FALSE	canonical	3	18	junction_10	3.30298686376774	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGGAAAAAAGGAAAAAAAG	NA	False	NA	NA	False	AAAACA	-23	NA	23639398	23690449	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344
transcript_99966.nic	chr5	+	1045	6	ISM	ENSMUSG00000029004.16	ENSMUST00000196889.5	2061	13	-40	14602	-40	-13653	5prime_fragment	FALSE	canonical	3	20	junction_1	3.57770876399966	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCAGGTATGTAAAAAA	NA	False	NA	NA	False	GATAAA	-39	NA	23639398	23676796	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745
transcript_99971.known	chr5	-	345	4	FSM	ENSMUSG00000105987.5	ENSMUST00000198984.5	345	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	6.68331255192114	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTAGGAGTCTTGTGAT	5261	False	NA	NA	False	NA	NA	NA	23917660	23905225	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_23905472_23915363_23915407_23916113_23916149_23917639
transcript_99972.nnic	chr5	-	2302	4	NNC	ENSMUSG00000105987.5	novel	474	3	NA	NA	0	-426	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.05536398239638	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTTCAAAAAATGGAAAAT	5257	False	NA	NA	False	AATAAA	-44	NA	23917664	23904493	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_23905574_23914244_23915407_23916113_23916149_23917639
transcript_99974.nnic	chr5	-	2236	4	NNC	ENSMUSG00000105987.5	novel	474	3	NA	NA	0	-492	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.05536398239638	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAATATTTGAATATAAT	5257	False	NA	NA	False	AATAAA	-3	NA	23917664	23904559	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	NNC_chr5_-_23905574_23914244_23915407_23916113_23916149_23917639
transcript_99977.known	chr5	-	3266	17	FSM	ENSMUSG00000057541.15	ENSMUST00000148618.8	3266	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	125.308556671123	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCATGTAAAAATCTTGT	NA	False	NA	-9	True	AATAAA	-23	NA	23988551	23945646	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_23946975_23947341_23947434_23948414_23948545_23951423_23951526_23952791_23952919_23953680_23953842_23954802_23954865_23957259_23957386_23959455_23959585_23965219_23965298_23967360_23967473_23968331_23968350_23973765_23973911_23980666_23980769_23980881_23980967_23983070_23983498_23988509
transcript_99980.known	chr5	-	3407	16	FSM	ENSMUSG00000057541.15	ENSMUST00000119946.8	3407	16	0	0	0	0	multi-exon	TRUE	canonical	3	301	junction_13	29.1369181623589	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCATGTAAAAATCTTGTC	NA	False	NA	-8	True	AATAAA	-24	NA	23988709	23945645	ES_r2c2_ont	iso_detect_ref_spbu_long_r2c2_ont	FSM_chr5_-_23946975_23947341_23947434_23948414_23948545_23951423_23951526_23952791_23952919_23953680_23953842_23954802_23954865_23957259_23957386_23959455_23959585_23965219_23965298_23967360_23967473_23973765_23973911_23980666_23980769_23980881_23980967_23983070_23983498_23988509
